Query 036914
Match_columns 68
No_of_seqs 115 out of 168
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 06:39:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036914.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036914hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02993 lupeol synthase 100.0 1.5E-34 3.2E-39 235.8 5.6 68 1-68 1-68 (763)
2 PLN03012 Camelliol C synthase 100.0 1.8E-34 3.8E-39 235.4 5.6 68 1-68 1-68 (759)
3 KOG0497 Oxidosqualene-lanoster 99.9 5.6E-28 1.2E-32 198.1 3.6 68 1-68 1-68 (760)
4 smart00120 HX Hemopexin-like r 82.7 0.75 1.6E-05 24.0 1.1 13 22-34 15-27 (45)
5 PF00045 Hemopexin: Hemopexin; 76.8 1.2 2.6E-05 24.0 0.7 12 22-33 15-26 (45)
6 COG2173 DdpX D-alanyl-D-alanin 76.0 0.98 2.1E-05 33.7 0.3 20 18-37 51-71 (211)
7 COG3592 Uncharacterized conser 73.0 2.6 5.6E-05 27.1 1.7 28 13-45 35-62 (74)
8 PF01011 PQQ: PQQ enzyme repea 68.5 3.4 7.4E-05 21.6 1.3 23 13-35 9-31 (38)
9 PF13387 DUF4105: Domain of un 64.0 5.2 0.00011 27.2 1.8 22 20-42 91-112 (176)
10 PRK10178 D-alanyl-D-alanine di 62.5 6.3 0.00014 28.3 2.0 33 17-51 24-58 (184)
11 PF09292 Neil1-DNA_bind: Endon 60.7 4.6 0.0001 23.2 0.9 16 13-28 14-29 (39)
12 smart00564 PQQ beta-propeller 60.5 6.5 0.00014 19.1 1.4 19 13-31 15-33 (33)
13 PF05979 DUF896: Bacterial pro 54.7 16 0.00034 22.6 2.6 20 34-53 18-37 (65)
14 PF09164 VitD-bind_III: Vitami 53.4 18 0.00039 22.9 2.8 21 32-53 27-47 (68)
15 PRK02539 hypothetical protein; 50.1 18 0.0004 23.5 2.5 20 34-53 20-39 (85)
16 cd07355 HN_L-delphilin-R2_like 49.3 21 0.00045 23.2 2.6 22 34-55 15-36 (80)
17 TIGR03009 plancto_dom_2 Planct 48.4 9.9 0.00022 27.7 1.2 12 24-35 71-82 (210)
18 PF07477 Glyco_hydro_67C: Glyc 48.3 2.5 5.4E-05 31.7 -2.0 39 23-65 13-51 (225)
19 PRK01631 hypothetical protein; 47.6 22 0.00047 22.7 2.5 20 34-53 19-38 (76)
20 PRK11546 zraP zinc resistance 47.4 21 0.00046 24.9 2.6 19 34-52 43-61 (143)
21 PF06433 Me-amine-dh_H: Methyl 45.2 13 0.00027 29.3 1.4 14 22-35 266-279 (342)
22 PF10892 DUF2688: Protein of u 45.2 17 0.00037 22.5 1.7 14 34-47 44-57 (60)
23 PRK01546 hypothetical protein; 43.8 27 0.00058 22.4 2.5 20 34-53 21-40 (79)
24 PF05726 Pirin_C: Pirin C-term 43.5 22 0.00047 22.2 2.0 25 26-55 79-103 (104)
25 KOG2515 Mannosyltransferase [C 43.3 8.7 0.00019 32.3 0.3 13 23-35 54-66 (568)
26 TIGR00811 sit silicon transpor 43.1 5.1 0.00011 33.5 -1.1 25 30-54 427-452 (545)
27 TIGR00547 lolA periplasmic cha 41.5 16 0.00036 25.8 1.4 13 24-36 85-97 (204)
28 PF06226 DUF1007: Protein of u 41.4 15 0.00033 25.9 1.2 21 25-45 42-77 (212)
29 PF14206 Cys_rich_CPCC: Cystei 39.2 29 0.00064 21.9 2.1 25 27-52 27-58 (78)
30 COG0184 RpsO Ribosomal protein 38.1 48 0.001 21.4 3.0 26 31-56 19-49 (89)
31 cd00730 rubredoxin Rubredoxin; 38.0 17 0.00037 21.1 0.8 11 28-38 9-19 (50)
32 PF00301 Rubredoxin: Rubredoxi 36.9 14 0.00031 21.2 0.4 12 28-39 9-20 (47)
33 PF12202 OSR1_C: Oxidative-str 36.7 24 0.00052 20.0 1.3 14 28-41 25-38 (38)
34 KOG3608 Zn finger proteins [Ge 35.7 12 0.00025 30.8 -0.1 18 51-68 383-400 (467)
35 PF13801 Metal_resist: Heavy-m 35.0 53 0.0011 19.2 2.7 21 33-53 40-60 (125)
36 KOG3043 Predicted hydrolase re 35.0 43 0.00093 25.5 2.8 20 33-52 216-235 (242)
37 PF06737 Transglycosylas: Tran 34.8 35 0.00075 21.7 2.0 37 13-51 18-67 (77)
38 PF12399 BCA_ABC_TP_C: Branche 34.2 28 0.00062 17.4 1.2 17 34-50 5-21 (23)
39 PF05700 BCAS2: Breast carcino 32.7 41 0.00088 23.9 2.3 19 30-48 15-33 (221)
40 PF11959 DUF3473: Domain of un 32.3 20 0.00044 24.0 0.7 9 27-35 82-90 (133)
41 COG1773 Rubredoxin [Energy pro 32.0 22 0.00048 21.4 0.7 11 28-38 11-21 (55)
42 COG0774 LpxC UDP-3-O-acyl-N-ac 30.6 34 0.00073 26.8 1.7 26 20-47 163-190 (300)
43 cd00353 Ribosomal_S15p_S13e Ri 30.1 87 0.0019 19.2 3.2 25 32-56 14-43 (80)
44 PF13297 Telomere_Sde2_2: Telo 29.9 34 0.00074 21.0 1.3 9 34-42 32-40 (60)
45 PF11453 DUF2950: Protein of u 29.1 23 0.0005 27.3 0.5 12 27-38 90-101 (271)
46 cd00094 HX Hemopexin-like repe 28.0 29 0.00063 23.5 0.8 16 22-37 116-131 (194)
47 PF04591 DUF596: Protein of un 28.0 50 0.0011 20.8 1.8 17 34-52 16-32 (70)
48 PF14304 CSTF_C: Transcription 27.8 58 0.0012 19.0 2.0 20 34-53 24-43 (46)
49 PF13964 Kelch_6: Kelch motif 27.8 42 0.00091 17.7 1.3 14 25-38 28-41 (50)
50 COG4224 Uncharacterized protei 27.7 73 0.0016 20.6 2.6 19 34-52 20-38 (77)
51 PF00312 Ribosomal_S15: Riboso 27.0 1.1E+02 0.0025 18.7 3.3 26 31-56 14-44 (83)
52 PF11178 DUF2963: Protein of u 26.7 39 0.00085 19.4 1.1 12 25-36 9-20 (51)
53 PF13415 Kelch_3: Galactose ox 26.3 37 0.0008 18.0 0.9 12 25-36 19-30 (49)
54 cd07148 ALDH_RL0313 Uncharacte 26.0 66 0.0014 24.7 2.5 34 17-52 2-36 (455)
55 KOG1621 1D-myo-inositol-tripho 25.8 37 0.0008 28.0 1.2 14 29-42 291-304 (458)
56 CHL00027 rps15 ribosomal prote 25.6 1.1E+02 0.0023 19.9 3.1 27 29-55 14-45 (90)
57 cd00161 RICIN Ricin-type beta- 25.4 57 0.0012 18.5 1.6 18 15-32 25-42 (124)
58 PF05593 RHS_repeat: RHS Repea 25.0 62 0.0013 16.8 1.6 18 16-33 7-25 (38)
59 smart00831 Cation_ATPase_N Cat 24.9 79 0.0017 17.5 2.2 19 42-60 15-33 (64)
60 KOG2881 Predicted membrane pro 24.9 45 0.00098 26.1 1.5 19 27-46 151-169 (294)
61 PF03842 Silic_transp: Silicon 24.8 13 0.00028 30.9 -1.5 27 28-54 426-453 (512)
62 PF13570 PQQ_3: PQQ-like domai 24.7 37 0.00081 17.4 0.7 10 24-33 1-10 (40)
63 PF09252 Feld-I_B: Allergen Fe 24.5 42 0.00092 21.0 1.0 24 34-57 27-50 (67)
64 PF07985 SRR1: SRR1; InterPro 23.9 1E+02 0.0023 17.7 2.6 20 25-45 35-54 (56)
65 COG5474 Uncharacterized conser 23.2 80 0.0017 22.8 2.4 26 27-52 45-70 (159)
66 COG5397 Uncharacterized conser 23.2 1.1E+02 0.0024 24.5 3.3 30 19-48 37-79 (349)
67 COG3575 Uncharacterized protei 23.1 82 0.0018 23.2 2.4 30 27-56 61-91 (184)
68 PF00128 Alpha-amylase: Alpha 22.7 95 0.0021 20.7 2.5 14 29-42 43-56 (316)
69 cd04283 ZnMc_hatching_enzyme Z 22.0 1.5E+02 0.0033 20.8 3.6 30 28-58 8-40 (182)
70 TIGR03042 PS_II_psbQ_bact phot 22.0 1.1E+02 0.0023 21.4 2.8 25 32-56 27-51 (142)
71 PF13308 YARHG: YARHG domain 21.7 64 0.0014 19.7 1.5 28 20-48 47-78 (81)
72 cd06007 R3H_DEXH_helicase R3H 21.7 1.3E+02 0.0028 17.7 2.7 25 25-50 16-40 (59)
73 PF15056 NRN1: Neuritin protei 21.5 1.1E+02 0.0024 20.2 2.6 23 34-56 51-74 (89)
74 KOG3355 Mitochondrial sulfhydr 21.4 18 0.00039 26.5 -1.2 26 19-44 69-101 (177)
75 PF05347 Complex1_LYR: Complex 21.4 81 0.0018 17.2 1.7 18 40-57 24-41 (59)
76 PF14723 SSFA2_C: Sperm-specif 21.0 76 0.0016 23.3 1.9 14 34-47 138-151 (179)
77 PF13984 MsyB: MsyB protein 20.7 92 0.002 21.6 2.2 18 35-54 3-20 (122)
78 COG1902 NemA NADH:flavin oxido 20.6 76 0.0016 24.6 1.9 32 21-52 104-153 (363)
79 PF00652 Ricin_B_lectin: Ricin 20.4 64 0.0014 18.7 1.2 21 13-34 26-46 (124)
80 TIGR02691 arsC_pI258_fam arsen 20.2 1.6E+02 0.0035 19.0 3.2 28 22-49 90-121 (129)
No 1
>PLN02993 lupeol synthase
Probab=100.00 E-value=1.5e-34 Score=235.81 Aligned_cols=68 Identities=65% Similarity=1.217 Sum_probs=66.2
Q ss_pred CceeeeeCCCCCCCceeecCCccceeeeEeCCCCCCHHHHHHHHHHHHHHhhccCCcCCccccccccC
Q 036914 1 MWRLKVAEGDKNSPYMFTTNNFVGRQIWEFDPKAGSPEELAEVEEARQKFYKNRHNVKPAGDLLWRLQ 68 (68)
Q Consensus 1 MWkLKiaegg~~~p~L~S~Nn~vGRQ~WEFDp~~GtpeEra~VE~aR~~F~~nRf~~k~SsDlLmR~Q 68 (68)
||||||++||+++|||+|||||||||+|||||++|||||+++||.+|++|+.|||++|||+|||||||
T Consensus 1 ~wrl~~~~~~~~~~~l~s~n~~~grq~w~~d~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 68 (763)
T PLN02993 1 MWKLKIGEGNGEDPYLFSSNNFVGRQTWEFDPKAGTPEERAAVEEARRSFLDNRSRVKGCSDLLWRMQ 68 (763)
T ss_pred CCceEeCCCCCCCcceecccCcCceeeeEeCCCCCChHHHHHHHHHHHHHHhcccccCCCHHHHHHHH
Confidence 99999999875699999999999999999999999999999999999999999999999999999998
No 2
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=1.8e-34 Score=235.37 Aligned_cols=68 Identities=66% Similarity=1.272 Sum_probs=66.3
Q ss_pred CceeeeeCCCCCCCceeecCCccceeeeEeCCCCCCHHHHHHHHHHHHHHhhccCCcCCccccccccC
Q 036914 1 MWRLKVAEGDKNSPYMFTTNNFVGRQIWEFDPKAGSPEELAEVEEARQKFYKNRHNVKPAGDLLWRLQ 68 (68)
Q Consensus 1 MWkLKiaegg~~~p~L~S~Nn~vGRQ~WEFDp~~GtpeEra~VE~aR~~F~~nRf~~k~SsDlLmR~Q 68 (68)
||||||++||+++|||+|||||||||+|||||++|||||+++||.+|++|+.|||++|||+|||||||
T Consensus 1 ~wrl~~~~~~~~~~~l~s~n~~~grq~w~~d~~~~~~e~~~~v~~~~~~~~~~~~~~~~~~d~~~r~~ 68 (759)
T PLN03012 1 MWKLKIAEGNGDDPYLFSTNNFAGRQTWEFDPDAGSPEELAAVEEARRIFYDDRFHVKASSDLIWRMQ 68 (759)
T ss_pred CCceEeCCCCCCCcceecccccCceeeeEeCCCCCChHHHHHHHHHHHHHHhcccccCCChHHHHHHH
Confidence 99999999875699999999999999999999999999999999999999999999999999999998
No 3
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.94 E-value=5.6e-28 Score=198.07 Aligned_cols=68 Identities=65% Similarity=1.087 Sum_probs=66.3
Q ss_pred CceeeeeCCCCCCCceeecCCccceeeeEeCCCCCCHHHHHHHHHHHHHHhhccCCcCCccccccccC
Q 036914 1 MWRLKVAEGDKNSPYMFTTNNFVGRQIWEFDPKAGSPEELAEVEEARQKFYKNRHNVKPAGDLLWRLQ 68 (68)
Q Consensus 1 MWkLKiaegg~~~p~L~S~Nn~vGRQ~WEFDp~~GtpeEra~VE~aR~~F~~nRf~~k~SsDlLmR~Q 68 (68)
||||||++|..++|+|+|||||||||+||||+++|||||+|+||+||++|..||+.+|+|+|||||||
T Consensus 1 mw~l~~~~~~~~~~~l~~tn~~~grq~W~~d~~~~~~e~~~~v~~~r~~f~~~~~~~k~s~dl~~r~q 68 (760)
T KOG0497|consen 1 MWRLKIGEGAGEDPHLFTTNNFVGRQTWEFDADAGGPEELAYVEEARANFSDNRSREKASLDLLWRMQ 68 (760)
T ss_pred CcceeeccccCCCCcccccccccCceeEEecCCCCCcchHHHHHHHHHhcCCcchhHHHhcccchhhh
Confidence 99999999865799999999999999999999999999999999999999999999999999999998
No 4
>smart00120 HX Hemopexin-like repeats. Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).
Probab=82.65 E-value=0.75 Score=24.00 Aligned_cols=13 Identities=54% Similarity=1.252 Sum_probs=11.0
Q ss_pred ccceeeeEeCCCC
Q 036914 22 FVGRQIWEFDPKA 34 (68)
Q Consensus 22 ~vGRQ~WEFDp~~ 34 (68)
|.|+|+|.||+..
T Consensus 15 Fkg~~yw~~~~~~ 27 (45)
T smart00120 15 FKGDKYWRFDPKR 27 (45)
T ss_pred EeCCEEEEEcCCc
Confidence 5699999999864
No 5
>PF00045 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexin (3.2.1.35 from EC) is a serum glycoprotein that binds haem and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation []. Hemopexin prevents haem-mediated oxidative stress. Structurally hemopexin consists of two similar halves of approximately two hundred amino acid residues connected by a histidine-rich hinge region. Each half is itself formed by the repetition of a basic unit of some 35 to 45 residues. Hemopexin-like domains have been found in two other types of proteins, vitronectin [], a cell adhesion and spreading factor found in plasma and tissues, and matrixins MMP-1, MMP-2, MMP-3, MMP-9, MMP-10, MMP-11, MMP-12, MMP-14, MMP-15 and MMP-16, members of the matrix metalloproteinase family that cleave extracellular matrix constituents []. These zinc endopeptidases, which belong to MEROPS peptidase subfamily M10A, have a single hemopexin-like domain in their C-terminal section. It is suggested that the hemopexin domain facilitates binding to a variety of molecules and proteins, for example the HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs). This entry represents the repeat found in hempoxein and related domains.; PDB: 1SU3_B 2CLT_B 3V6N_B 3C7X_A 1GXD_A 1RTG_A 1CK7_A 1GEN_A 1ITV_A 2JXY_A ....
Probab=76.79 E-value=1.2 Score=23.99 Aligned_cols=12 Identities=50% Similarity=1.113 Sum_probs=10.7
Q ss_pred ccceeeeEeCCC
Q 036914 22 FVGRQIWEFDPK 33 (68)
Q Consensus 22 ~vGRQ~WEFDp~ 33 (68)
|.|+|+|.||..
T Consensus 15 Fkg~~ywr~~~~ 26 (45)
T PF00045_consen 15 FKGNQYWRFDES 26 (45)
T ss_dssp EETTEEEEEETT
T ss_pred EECCEEEEEcCc
Confidence 579999999987
No 6
>COG2173 DdpX D-alanyl-D-alanine dipeptidase [Cell envelope biogenesis, outer membrane]
Probab=75.98 E-value=0.98 Score=33.67 Aligned_cols=20 Identities=40% Similarity=0.713 Sum_probs=16.1
Q ss_pred ecCCccceeeeEeCCC-CCCH
Q 036914 18 TTNNFVGRQIWEFDPK-AGSP 37 (68)
Q Consensus 18 S~Nn~vGRQ~WEFDp~-~Gtp 37 (68)
+.|||.||++|+++|- +-+|
T Consensus 51 ~a~nf~grp~~~~~~~c~l~~ 71 (211)
T COG2173 51 GANNFTGRPIYEIGARCLLHP 71 (211)
T ss_pred hccccccccccccCchheecH
Confidence 6899999999999865 3444
No 7
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=73.03 E-value=2.6 Score=27.08 Aligned_cols=28 Identities=36% Similarity=0.718 Sum_probs=22.3
Q ss_pred CCceeecCCccceeeeEeCCCCCCHHHHHHHHH
Q 036914 13 SPYMFTTNNFVGRQIWEFDPKAGSPEELAEVEE 45 (68)
Q Consensus 13 ~p~L~S~Nn~vGRQ~WEFDp~~GtpeEra~VE~ 45 (68)
+|.++- +||.-| -+|+++.+||...|-+
T Consensus 35 n~~vF~----~~rkPW-I~Pd~~~ve~i~~vi~ 62 (74)
T COG3592 35 NPKVFN----LGRKPW-IMPDAVDVEEIVKVID 62 (74)
T ss_pred CHhhcc----cCCCCc-cCCCCCCHHHHHHHHH
Confidence 566654 899999 5999999999877654
No 8
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=68.53 E-value=3.4 Score=21.59 Aligned_cols=23 Identities=17% Similarity=0.639 Sum_probs=19.8
Q ss_pred CCceeecCCccceeeeEeCCCCC
Q 036914 13 SPYMFTTNNFVGRQIWEFDPKAG 35 (68)
Q Consensus 13 ~p~L~S~Nn~vGRQ~WEFDp~~G 35 (68)
+-.|+-.|---|-..|+|++...
T Consensus 9 ~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 9 DGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp TSEEEEEETTTTSEEEEEESSSG
T ss_pred CCEEEEEECCCCCEEEeeeCCCC
Confidence 55899999999999999997753
No 9
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=64.05 E-value=5.2 Score=27.16 Aligned_cols=22 Identities=41% Similarity=0.800 Sum_probs=16.8
Q ss_pred CCccceeeeEeCCCCCCHHHHHH
Q 036914 20 NNFVGRQIWEFDPKAGSPEELAE 42 (68)
Q Consensus 20 Nn~vGRQ~WEFDp~~GtpeEra~ 42 (68)
.+.-||.+|||.-++ ||||+..
T Consensus 91 ~~~e~R~v~~y~LnL-s~ee~~~ 112 (176)
T PF13387_consen 91 SNVEGRDVWEYPLNL-SPEEKQR 112 (176)
T ss_pred hhhhCCcEEEEEeeC-CHHHHHH
Confidence 445789999999885 6887644
No 10
>PRK10178 D-alanyl-D-alanine dipeptidase; Provisional
Probab=62.53 E-value=6.3 Score=28.33 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=22.4
Q ss_pred eecCCccceeeeEeCCC--CCCHHHHHHHHHHHHHHh
Q 036914 17 FTTNNFVGRQIWEFDPK--AGSPEELAEVEEARQKFY 51 (68)
Q Consensus 17 ~S~Nn~vGRQ~WEFDp~--~GtpeEra~VE~aR~~F~ 51 (68)
.|+|||+|+.+ |+-. ..+++--..+.+|.+...
T Consensus 24 at~~NF~g~~i--Y~~~~c~l~~~aA~aL~~a~~~l~ 58 (184)
T PRK10178 24 ATADNLTGKPI--YREARCLLHKDAEAALRKAVSIAQ 58 (184)
T ss_pred ccCCCcCCCcc--ccCCeEEECHHHHHHHHHHHHHHH
Confidence 38999999999 5432 466766555666665553
No 11
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=60.75 E-value=4.6 Score=23.19 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=10.9
Q ss_pred CCceeecCCccceeee
Q 036914 13 SPYMFTTNNFVGRQIW 28 (68)
Q Consensus 13 ~p~L~S~Nn~vGRQ~W 28 (68)
.|-+.|..++.||-+|
T Consensus 14 v~gM~sl~D~~gRTiW 29 (39)
T PF09292_consen 14 VPGMKSLRDRNGRTIW 29 (39)
T ss_dssp -TT-EEEE-TTS-EEE
T ss_pred ccccccccccCCCEEE
Confidence 4568999999999999
No 12
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=60.53 E-value=6.5 Score=19.06 Aligned_cols=19 Identities=11% Similarity=0.534 Sum_probs=15.9
Q ss_pred CCceeecCCccceeeeEeC
Q 036914 13 SPYMFTTNNFVGRQIWEFD 31 (68)
Q Consensus 13 ~p~L~S~Nn~vGRQ~WEFD 31 (68)
+-.|+..|-..|...|+|+
T Consensus 15 ~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 15 DGTLYALDAKTGEILWTYK 33 (33)
T ss_pred CCEEEEEEcccCcEEEEcC
Confidence 4578888888999999875
No 13
>PF05979 DUF896: Bacterial protein of unknown function (DUF896); InterPro: IPR009242 This family consists of several short, hypothetical bacterial proteins of unknown function. They may be involved in the bacterial SOS response [].; PDB: 2HEP_A 3BHP_C 2JVD_A.
Probab=54.67 E-value=16 Score=22.59 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 036914 34 AGSPEELAEVEEARQKFYKN 53 (68)
Q Consensus 34 ~GtpeEra~VE~aR~~F~~n 53 (68)
.-|+||.++-+.+|++|-.+
T Consensus 18 gLT~eE~~Eq~~LR~eYl~~ 37 (65)
T PF05979_consen 18 GLTEEEKAEQAELRQEYLQN 37 (65)
T ss_dssp ---HHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 35899999999999999764
No 14
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=53.42 E-value=18 Score=22.89 Aligned_cols=21 Identities=43% Similarity=0.706 Sum_probs=17.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhhc
Q 036914 32 PKAGSPEELAEVEEARQKFYKN 53 (68)
Q Consensus 32 p~~GtpeEra~VE~aR~~F~~n 53 (68)
|+| ||+|+++.-+.|.+|...
T Consensus 27 P~a-t~~~l~~lve~RsdFAS~ 47 (68)
T PF09164_consen 27 PDA-TPTELKELVEKRSDFASK 47 (68)
T ss_dssp TTS--HHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHhhHHHH
Confidence 665 799999999999999864
No 15
>PRK02539 hypothetical protein; Provisional
Probab=50.09 E-value=18 Score=23.54 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 036914 34 AGSPEELAEVEEARQKFYKN 53 (68)
Q Consensus 34 ~GtpeEra~VE~aR~~F~~n 53 (68)
.-|+||.++-+++|+.|-++
T Consensus 20 gLT~eEk~Eq~~LR~eYl~~ 39 (85)
T PRK02539 20 GLTGEEKVEQAKLREEYIEG 39 (85)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 45999999999999998764
No 16
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=49.29 E-value=21 Score=23.22 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHhhccC
Q 036914 34 AGSPEELAEVEEARQKFYKNRH 55 (68)
Q Consensus 34 ~GtpeEra~VE~aR~~F~~nRf 55 (68)
+-||.||..|-+|=+.|..+|-
T Consensus 15 lLt~~ER~~i~qaL~~y~~~Rn 36 (80)
T cd07355 15 LLTPPERYGIKKALEDYFQHRN 36 (80)
T ss_pred hCCHHHHHHHHHHHHHHHHhcc
Confidence 4699999999999999999884
No 17
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=48.40 E-value=9.9 Score=27.73 Aligned_cols=12 Identities=17% Similarity=0.509 Sum_probs=10.2
Q ss_pred ceeeeEeCCCCC
Q 036914 24 GRQIWEFDPKAG 35 (68)
Q Consensus 24 GRQ~WEFDp~~G 35 (68)
|-.+|.|||++-
T Consensus 71 Gk~lW~YDpdle 82 (210)
T TIGR03009 71 GTAVYAYNGLAK 82 (210)
T ss_pred CCEEEEECCChh
Confidence 779999999853
No 18
>PF07477 Glyco_hydro_67C: Glycosyl hydrolase family 67 C-terminus; InterPro: IPR011099 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the C-terminal region of alpha-glucuronidase, which is mainly alpha-helical. It wraps around the catalytic domain (IPR011100 from INTERPRO), making additional interactions both with the N-terminal domain (IPR005154 from INTERPRO) of its parent monomer and also forming the majority of the dimer-surface with the equivalent C-terminal domain of the other monomer of the dimer [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1GQL_A 1GQI_B 1GQJ_B 1GQK_A 1H41_A 1MQR_A 1K9F_A 1K9E_A 1L8N_A 1K9D_A ....
Probab=48.28 E-value=2.5 Score=31.67 Aligned_cols=39 Identities=36% Similarity=0.591 Sum_probs=23.2
Q ss_pred cceeeeEeCCCCCCHHHHHHHHHHHHHHhhccCCcCCcccccc
Q 036914 23 VGRQIWEFDPKAGSPEELAEVEEARQKFYKNRHNVKPAGDLLW 65 (68)
Q Consensus 23 vGRQ~WEFDp~~GtpeEra~VE~aR~~F~~nRf~~k~SsDlLm 65 (68)
-||=.| ||++ |+|++|+ |=+|.-|..+---+..=.++||
T Consensus 13 fGRLAW--dp~l-sse~Ia~-EW~~~TF~~d~~~~~~v~~mm~ 51 (225)
T PF07477_consen 13 FGRLAW--DPDL-SSEEIAD-EWIRMTFGNDPKVVETVVDMMM 51 (225)
T ss_dssp HHHHHH---TTS--HHHHHH-HHHHHHH---HHHHHHHHHHHH
T ss_pred HHHhhc--CCCC-CHHHHHH-HHHHhhcCCCHHHHHHHHHHHH
Confidence 488899 9996 6888765 7788888765433444444444
No 19
>PRK01631 hypothetical protein; Provisional
Probab=47.58 E-value=22 Score=22.75 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.6
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 036914 34 AGSPEELAEVEEARQKFYKN 53 (68)
Q Consensus 34 ~GtpeEra~VE~aR~~F~~n 53 (68)
.-|++|.++-..+|+.|-++
T Consensus 19 gLT~eE~~Eq~~LR~eYl~~ 38 (76)
T PRK01631 19 GLTVDEKQEQQMLRQNYTQT 38 (76)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999999775
No 20
>PRK11546 zraP zinc resistance protein; Provisional
Probab=47.45 E-value=21 Score=24.90 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 036914 34 AGSPEELAEVEEARQKFYK 52 (68)
Q Consensus 34 ~GtpeEra~VE~aR~~F~~ 52 (68)
.-|||++++++..+++|..
T Consensus 43 ~LT~EQQa~~q~I~~~f~~ 61 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYA 61 (143)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 3699999999999999975
No 21
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=45.20 E-value=13 Score=29.28 Aligned_cols=14 Identities=29% Similarity=0.646 Sum_probs=11.2
Q ss_pred ccceeeeEeCCCCC
Q 036914 22 FVGRQIWEFDPKAG 35 (68)
Q Consensus 22 ~vGRQ~WEFDp~~G 35 (68)
.-|+++|+||+..+
T Consensus 266 dpgteVWv~D~~t~ 279 (342)
T PF06433_consen 266 DPGTEVWVYDLKTH 279 (342)
T ss_dssp S-EEEEEEEETTTT
T ss_pred CCceEEEEEECCCC
Confidence 45899999999865
No 22
>PF10892 DUF2688: Protein of unknown function (DUF2688); InterPro: IPR024392 Members of this protein family are annotated as KleB, and may play a role in the regulation of transcription in plasmids.
Probab=45.19 E-value=17 Score=22.54 Aligned_cols=14 Identities=43% Similarity=0.415 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHH
Q 036914 34 AGSPEELAEVEEAR 47 (68)
Q Consensus 34 ~GtpeEra~VE~aR 47 (68)
--||||..+++++-
T Consensus 44 CitpEE~~~I~e~~ 57 (60)
T PF10892_consen 44 CITPEEDREILEAT 57 (60)
T ss_pred cCCHHHHHHHHHHH
Confidence 35899999999863
No 23
>PRK01546 hypothetical protein; Provisional
Probab=43.82 E-value=27 Score=22.42 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 036914 34 AGSPEELAEVEEARQKFYKN 53 (68)
Q Consensus 34 ~GtpeEra~VE~aR~~F~~n 53 (68)
.-|++|.++-+.+|+.|-++
T Consensus 21 gLT~eEk~Eq~~LR~eYl~~ 40 (79)
T PRK01546 21 GLTEEEQRERQSLREQYLKG 40 (79)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999998764
No 24
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=43.47 E-value=22 Score=22.17 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=17.2
Q ss_pred eeeEeCCCCCCHHHHHHHHHHHHHHhhccC
Q 036914 26 QIWEFDPKAGSPEELAEVEEARQKFYKNRH 55 (68)
Q Consensus 26 Q~WEFDp~~GtpeEra~VE~aR~~F~~nRf 55 (68)
|.|=|- ..|.| +|++|.++|.+.||
T Consensus 79 ~~GpFV--mnt~e---eI~qA~~dy~~g~f 103 (104)
T PF05726_consen 79 QYGPFV--MNTRE---EIEQAFEDYQNGKF 103 (104)
T ss_dssp EETTEE--ESSHH---HHHHHHHHHHCT-T
T ss_pred EECCcc--cCCHH---HHHHHHHHHHhCCC
Confidence 455554 34555 68899999999887
No 25
>KOG2515 consensus Mannosyltransferase [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=43.34 E-value=8.7 Score=32.31 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=10.9
Q ss_pred cceeeeEeCCCCC
Q 036914 23 VGRQIWEFDPKAG 35 (68)
Q Consensus 23 vGRQ~WEFDp~~G 35 (68)
-|=|||||-|+.+
T Consensus 54 ~GfQTWEYSP~ya 66 (568)
T KOG2515|consen 54 EGFQTWEYSPEYA 66 (568)
T ss_pred ccccceeeCchhH
Confidence 4889999999864
No 26
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=43.11 E-value=5.1 Score=33.47 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=20.5
Q ss_pred eCCC-CCCHHHHHHHHHHHHHHhhcc
Q 036914 30 FDPK-AGSPEELAEVEEARQKFYKNR 54 (68)
Q Consensus 30 FDp~-~GtpeEra~VE~aR~~F~~nR 54 (68)
+|.- -|||||||+-+++-..|...|
T Consensus 427 ~devyvgt~eer~~~~~~d~~~~~~~ 452 (545)
T TIGR00811 427 LDEVYVGTAEERAAGEKPDHSVHAGR 452 (545)
T ss_pred cceeEeCCHHHhhhccCCcccccccc
Confidence 4555 499999999999988888766
No 27
>TIGR00547 lolA periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself.
Probab=41.51 E-value=16 Score=25.75 Aligned_cols=13 Identities=31% Similarity=0.922 Sum_probs=10.7
Q ss_pred ceeeeEeCCCCCC
Q 036914 24 GRQIWEFDPKAGS 36 (68)
Q Consensus 24 GRQ~WEFDp~~Gt 36 (68)
|..+|-|||+.-.
T Consensus 85 G~~vw~Ydp~leQ 97 (204)
T TIGR00547 85 GKTLWFYDPFVEQ 97 (204)
T ss_pred CCEEEEECCCCce
Confidence 7899999998543
No 28
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=41.43 E-value=15 Score=25.92 Aligned_cols=21 Identities=43% Similarity=0.714 Sum_probs=14.5
Q ss_pred eeeeEeCCC---------------CCCHHHHHHHHH
Q 036914 25 RQIWEFDPK---------------AGSPEELAEVEE 45 (68)
Q Consensus 25 RQ~WEFDp~---------------~GtpeEra~VE~ 45 (68)
|++|.||+- .-+++|.+++.+
T Consensus 42 ~~~W~fDe~~S~~ll~~~D~~~dg~~~~~el~~l~~ 77 (212)
T PF06226_consen 42 RMTWTFDEFFSAYLLEGLDKDGDGKLDPEELAALAK 77 (212)
T ss_pred EEEEEeCchhHHHHHHhhhhcccCCCCHHHHHHHHH
Confidence 799999973 235566666654
No 29
>PF14206 Cys_rich_CPCC: Cysteine-rich CPCC
Probab=39.19 E-value=29 Score=21.93 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=17.5
Q ss_pred eeEeCCC-------CCCHHHHHHHHHHHHHHhh
Q 036914 27 IWEFDPK-------AGSPEELAEVEEARQKFYK 52 (68)
Q Consensus 27 ~WEFDp~-------~GtpeEra~VE~aR~~F~~ 52 (68)
.||.|+- .|.|- .--+.+||++|.+
T Consensus 27 ~WEdD~~q~~~pd~~~G~N-~~SL~eAr~ny~~ 58 (78)
T PF14206_consen 27 FWEDDGVQLRDPDYYGGAN-HMSLNEARENYKK 58 (78)
T ss_pred CcccCCccccCCcccCCCC-HHHHHHHHHHHHH
Confidence 5888763 23333 6678899999986
No 30
>COG0184 RpsO Ribosomal protein S15P/S13E [Translation, ribosomal structure and biogenesis]
Probab=38.08 E-value=48 Score=21.45 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=19.6
Q ss_pred CCCCCCHHHH-----HHHHHHHHHHhhccCC
Q 036914 31 DPKAGSPEEL-----AEVEEARQKFYKNRHN 56 (68)
Q Consensus 31 Dp~~GtpeEr-----a~VE~aR~~F~~nRf~ 56 (68)
..+.||||+. +.+..++.+|..|+-.
T Consensus 19 ~~dtgs~evq~a~Lt~ri~~L~~Hlk~hkKD 49 (89)
T COG0184 19 EVDTGSGEVQLALLTERINNLTEHLKEHKKD 49 (89)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 4567888776 4678889999988743
No 31
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=38.00 E-value=17 Score=21.09 Aligned_cols=11 Identities=36% Similarity=1.084 Sum_probs=8.3
Q ss_pred eEeCCCCCCHH
Q 036914 28 WEFDPKAGSPE 38 (68)
Q Consensus 28 WEFDp~~Gtpe 38 (68)
|+|||+.|.|+
T Consensus 9 yiYd~~~Gd~~ 19 (50)
T cd00730 9 YIYDPAEGDPD 19 (50)
T ss_pred eEECCCCCCcc
Confidence 88999876553
No 32
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=36.87 E-value=14 Score=21.19 Aligned_cols=12 Identities=42% Similarity=1.099 Sum_probs=9.8
Q ss_pred eEeCCCCCCHHH
Q 036914 28 WEFDPKAGSPEE 39 (68)
Q Consensus 28 WEFDp~~GtpeE 39 (68)
|.|||..|.|+.
T Consensus 9 yvYd~~~Gd~~~ 20 (47)
T PF00301_consen 9 YVYDPEKGDPEN 20 (47)
T ss_dssp BEEETTTBBGGG
T ss_pred EEEcCCcCCccc
Confidence 889999987754
No 33
>PF12202 OSR1_C: Oxidative-stress-responsive kinase 1 C terminal; InterPro: IPR024678 Oxidative-stress-responsive kinase 1 (OSR1) is involved in the signalling cascade which activates Na/K/2Cl co-transporter during osmotic stress. This entry represents the CCT domain found in OSR1, STE20/SPS1-related kinase and in WNK activators []. This domain is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue F that may be functionally important. ; PDB: 2V3S_A 2LRU_A.
Probab=36.70 E-value=24 Score=19.97 Aligned_cols=14 Identities=43% Similarity=0.676 Sum_probs=10.4
Q ss_pred eEeCCCCCCHHHHH
Q 036914 28 WEFDPKAGSPEELA 41 (68)
Q Consensus 28 WEFDp~~GtpeEra 41 (68)
.+||+...|||+.|
T Consensus 25 F~F~~~~D~~e~VA 38 (38)
T PF12202_consen 25 FEFDLGKDTAEEVA 38 (38)
T ss_dssp EEEETTT--HHHHH
T ss_pred EEEecCCCcccccC
Confidence 68999999999865
No 34
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=35.73 E-value=12 Score=30.81 Aligned_cols=18 Identities=33% Similarity=0.268 Sum_probs=15.7
Q ss_pred hhccCCcCCccccccccC
Q 036914 51 YKNRHNVKPAGDLLWRLQ 68 (68)
Q Consensus 51 ~~nRf~~k~SsDlLmR~Q 68 (68)
---||+.|...|-+||||
T Consensus 383 Gh~RFtYk~~edG~mRLq 400 (467)
T KOG3608|consen 383 GHKRFTYKVDEDGFMRLQ 400 (467)
T ss_pred CCCceeeeeccCceeeee
Confidence 346899999999999998
No 35
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=35.01 E-value=53 Score=19.23 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHHHhhc
Q 036914 33 KAGSPEELAEVEEARQKFYKN 53 (68)
Q Consensus 33 ~~GtpeEra~VE~aR~~F~~n 53 (68)
-.-|||+++++...+.+|...
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~ 60 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQE 60 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 346999999999999988763
No 36
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=35.00 E-value=43 Score=25.55 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHHHHhh
Q 036914 33 KAGSPEELAEVEEARQKFYK 52 (68)
Q Consensus 33 ~~GtpeEra~VE~aR~~F~~ 52 (68)
+..+||.+..+|+|++.|.+
T Consensus 216 ~~~~Ped~~~~eea~~~~~~ 235 (242)
T KOG3043|consen 216 NISSPEDKKAAEEAYQRFIS 235 (242)
T ss_pred CCCChhHHHHHHHHHHHHHH
Confidence 46799999999999999875
No 37
>PF06737 Transglycosylas: Transglycosylase-like domain; InterPro: IPR010618 This family of proteins is very likely to act as transglycosylase enzymes related to IPR001916 from INTERPRO and IPR008258 from INTERPRO. These other families are weakly matched by this family, and include the known active site residues.; GO: 0005576 extracellular region; PDB: 1XSF_A 3EO5_A.
Probab=34.77 E-value=35 Score=21.74 Aligned_cols=37 Identities=22% Similarity=0.439 Sum_probs=21.9
Q ss_pred CCceeecCCccce-----eeeE------e--CCCCCCHHHHHHHHHHHHHHh
Q 036914 13 SPYMFTTNNFVGR-----QIWE------F--DPKAGSPEELAEVEEARQKFY 51 (68)
Q Consensus 13 ~p~L~S~Nn~vGR-----Q~WE------F--Dp~~GtpeEra~VE~aR~~F~ 51 (68)
++-+-+.|++-|- .+|. | .|+..|++| ++..|.+-+.
T Consensus 18 n~~~ntgnG~yGg~Qf~~sTW~a~Gg~~yap~~~~As~~e--Qi~~A~~l~~ 67 (77)
T PF06737_consen 18 NWAINTGNGYYGGLQFSQSTWRAYGGSGYAPRPDQASRAE--QIAVAEKLYA 67 (77)
T ss_dssp -TT---SSSBBTTTTBBHHHHHHTTGGGT-SSCCCS-HHH--HHHHHHHHHH
T ss_pred CCccCCCCCccceeccCHHHHHHhCCCcCCCChhhCCHHH--HHHHHHHHHH
Confidence 7778888988874 3565 4 677889998 5666665554
No 38
>PF12399 BCA_ABC_TP_C: Branched-chain amino acid ATP-binding cassette transporter
Probab=34.16 E-value=28 Score=17.41 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHHHHHH
Q 036914 34 AGSPEELAEVEEARQKF 50 (68)
Q Consensus 34 ~GtpeEra~VE~aR~~F 50 (68)
.|||+|...=+++|+.|
T Consensus 5 ~G~p~~i~~n~~V~~aY 21 (23)
T PF12399_consen 5 EGTPEEIRANPEVREAY 21 (23)
T ss_pred EcCHHHHhcCHHHHHhh
Confidence 38999987766666654
No 39
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=32.67 E-value=41 Score=23.94 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.2
Q ss_pred eCCCCCCHHHHHHHHHHHH
Q 036914 30 FDPKAGSPEELAEVEEARQ 48 (68)
Q Consensus 30 FDp~~GtpeEra~VE~aR~ 48 (68)
+|++.+||+++++|++.=.
T Consensus 15 iD~~~~~~~~~~~a~~lI~ 33 (221)
T PF05700_consen 15 IDPDYDTPEERQAAEALIE 33 (221)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 5888889999998877643
No 40
>PF11959 DUF3473: Domain of unknown function (DUF3473); InterPro: IPR022560 This domain, found in bacteria and archaea, is functionally uncharacterised. It is about 130 amino acids in length and is found C-terminal to PF01522 from PFAM. It contains two completely conserved residues (P and H) that may be functionally important.
Probab=32.30 E-value=20 Score=23.99 Aligned_cols=9 Identities=56% Similarity=1.228 Sum_probs=7.0
Q ss_pred eeEeCCCCC
Q 036914 27 IWEFDPKAG 35 (68)
Q Consensus 27 ~WEFDp~~G 35 (68)
=|||||+.-
T Consensus 82 PwE~dp~qp 90 (133)
T PF11959_consen 82 PWEFDPDQP 90 (133)
T ss_pred ceecCCCCc
Confidence 499999853
No 41
>COG1773 Rubredoxin [Energy production and conversion]
Probab=32.04 E-value=22 Score=21.44 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=8.5
Q ss_pred eEeCCCCCCHH
Q 036914 28 WEFDPKAGSPE 38 (68)
Q Consensus 28 WEFDp~~Gtpe 38 (68)
|.|||+.|-|+
T Consensus 11 ~vYd~e~Gdp~ 21 (55)
T COG1773 11 YVYDPEKGDPR 21 (55)
T ss_pred eEeccccCCcc
Confidence 88999877654
No 42
>COG0774 LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]
Probab=30.61 E-value=34 Score=26.84 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=16.3
Q ss_pred CCccce--eeeEeCCCCCCHHHHHHHHHHH
Q 036914 20 NNFVGR--QIWEFDPKAGSPEELAEVEEAR 47 (68)
Q Consensus 20 Nn~vGR--Q~WEFDp~~GtpeEra~VE~aR 47 (68)
+..+|| |.|+||-..-+- +.+|-.||
T Consensus 163 ~p~Ig~~~q~~~~~~~~~sf--~~eIa~AR 190 (300)
T COG0774 163 HPAIGRQWQSFEFDFSAESF--RKEIARAR 190 (300)
T ss_pred CcccCCcceeEEEecchHHH--HHHhhhhh
Confidence 446999 999999763222 23444444
No 43
>cd00353 Ribosomal_S15p_S13e Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. S15 also plays an important autoregulatory role by binding and preventing its own mRNA from being translated. S15 has a predominantly alpha-helical fold that is highly structured except for the N-terminal alpha helix.
Probab=30.11 E-value=87 Score=19.21 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=18.2
Q ss_pred CCCCCHHHHH-----HHHHHHHHHhhccCC
Q 036914 32 PKAGSPEELA-----EVEEARQKFYKNRHN 56 (68)
Q Consensus 32 p~~GtpeEra-----~VE~aR~~F~~nRf~ 56 (68)
.|.|++|... .|..++.++..|+-.
T Consensus 14 ~DtGs~evQia~LT~rI~~L~~Hl~~~~KD 43 (80)
T cd00353 14 GDTGSPEVQLALLTERIVNLTEHLEKNKKD 43 (80)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3589998874 577788888877643
No 44
>PF13297 Telomere_Sde2_2: Telomere stability C-terminal
Probab=29.90 E-value=34 Score=21.02 Aligned_cols=9 Identities=33% Similarity=0.438 Sum_probs=7.4
Q ss_pred CCCHHHHHH
Q 036914 34 AGSPEELAE 42 (68)
Q Consensus 34 ~GtpeEra~ 42 (68)
.||++|||+
T Consensus 32 GGTl~ERA~ 40 (60)
T PF13297_consen 32 GGTLQERAA 40 (60)
T ss_pred CCCHHHHHH
Confidence 589999875
No 45
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=29.11 E-value=23 Score=27.27 Aligned_cols=12 Identities=50% Similarity=0.927 Sum_probs=10.1
Q ss_pred eeEeCCCCCCHH
Q 036914 27 IWEFDPKAGSPE 38 (68)
Q Consensus 27 ~WEFDp~~Gtpe 38 (68)
-|.||+.+|..|
T Consensus 90 gW~FD~~aG~~E 101 (271)
T PF11453_consen 90 GWRFDTAAGREE 101 (271)
T ss_pred CceecHHHHHHH
Confidence 399999999665
No 46
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=28.04 E-value=29 Score=23.51 Aligned_cols=16 Identities=31% Similarity=0.766 Sum_probs=12.6
Q ss_pred ccceeeeEeCCCCCCH
Q 036914 22 FVGRQIWEFDPKAGSP 37 (68)
Q Consensus 22 ~vGRQ~WEFDp~~Gtp 37 (68)
|.|.|.|.||....+.
T Consensus 116 Fkg~~y~ry~~~~~~v 131 (194)
T cd00094 116 FKGDKYWRYDEKTQKM 131 (194)
T ss_pred EeCCEEEEEeCCCccc
Confidence 5699999999866543
No 47
>PF04591 DUF596: Protein of unknown function, DUF596; InterPro: IPR007670 This family contains several uncharacterised proteins.; PDB: 2O5H_B.
Probab=27.98 E-value=50 Score=20.79 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 036914 34 AGSPEELAEVEEARQKFYK 52 (68)
Q Consensus 34 ~GtpeEra~VE~aR~~F~~ 52 (68)
.||+|| +||--|+.|-+
T Consensus 16 ~Gt~eE--qve~fr~~fP~ 32 (70)
T PF04591_consen 16 EGTTEE--QVEMFRKSFPA 32 (70)
T ss_dssp ---HHH--HHHHHHHH--S
T ss_pred cCCHHH--HHHHHHHHCCC
Confidence 489999 89999998865
No 48
>PF14304 CSTF_C: Transcription termination and cleavage factor C-terminal; PDB: 2J8P_A.
Probab=27.84 E-value=58 Score=19.00 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHHHhhc
Q 036914 34 AGSPEELAEVEEARQKFYKN 53 (68)
Q Consensus 34 ~GtpeEra~VE~aR~~F~~n 53 (68)
+-.|+||+.|-.+|+.|.++
T Consensus 24 ~LPp~qR~~I~~Lr~ql~~~ 43 (46)
T PF14304_consen 24 ALPPDQRQQILQLRQQLMRG 43 (46)
T ss_dssp TS-HHHHTHHHHHHHHHH--
T ss_pred hCCHHHHHHHHHHHHHHHhc
Confidence 34689999999999988764
No 49
>PF13964 Kelch_6: Kelch motif
Probab=27.76 E-value=42 Score=17.70 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=10.7
Q ss_pred eeeeEeCCCCCCHH
Q 036914 25 RQIWEFDPKAGSPE 38 (68)
Q Consensus 25 RQ~WEFDp~~Gtpe 38 (68)
..+|.|||...+=+
T Consensus 28 ~~v~~yd~~t~~W~ 41 (50)
T PF13964_consen 28 NDVERYDPETNTWE 41 (50)
T ss_pred ccEEEEcCCCCcEE
Confidence 47899999977533
No 50
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.74 E-value=73 Score=20.58 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHHhh
Q 036914 34 AGSPEELAEVEEARQKFYK 52 (68)
Q Consensus 34 ~GtpeEra~VE~aR~~F~~ 52 (68)
.-|+||..+-+.+|++|-+
T Consensus 20 gLTeeEk~eQ~~LR~eYl~ 38 (77)
T COG4224 20 GLTEEEKKEQAKLRREYLE 38 (77)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4589999999999999865
No 51
>PF00312 Ribosomal_S15: Ribosomal protein S15; InterPro: IPR000589 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S15 is one of the proteins from the small ribosomal subunit. In Escherichia coli, this protein binds to 16S ribosomal RNA and functions at early steps in ribosome assembly. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ,], groups bacterial and plant chloroplast S15; archaeal Haloarcula marismortui HmaS15 (HS11); yeast mitochondrial S28; and mammalian, yeast, Brugia pahangi and Wuchereria bancrofti S13. S15 is a protein of 80 to 250 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1YSH_E 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 1S1H_O 3MR8_O 3D5C_O 3MS0_O ....
Probab=27.00 E-value=1.1e+02 Score=18.73 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=19.2
Q ss_pred CCCCCCHHHHH-----HHHHHHHHHhhccCC
Q 036914 31 DPKAGSPEELA-----EVEEARQKFYKNRHN 56 (68)
Q Consensus 31 Dp~~GtpeEra-----~VE~aR~~F~~nRf~ 56 (68)
+-|.|+||... .|..++++|..|+-.
T Consensus 14 ~~dtgs~evqia~LT~rI~~L~~Hl~~~kkD 44 (83)
T PF00312_consen 14 PNDTGSPEVQIAILTERIRNLQEHLKKNKKD 44 (83)
T ss_dssp TTSSSSHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44589998873 577888888887643
No 52
>PF11178 DUF2963: Protein of unknown function (DUF2963); InterPro: IPR021348 This family of proteins with unknown function appears to be restricted to Mollicutes.
Probab=26.72 E-value=39 Score=19.37 Aligned_cols=12 Identities=42% Similarity=0.786 Sum_probs=9.4
Q ss_pred eeeeEeCCCCCC
Q 036914 25 RQIWEFDPKAGS 36 (68)
Q Consensus 25 RQ~WEFDp~~Gt 36 (68)
..+.||||..|.
T Consensus 9 ~~I~eydp~Tg~ 20 (51)
T PF11178_consen 9 DYITEYDPQTGK 20 (51)
T ss_pred EEEEEECcccCc
Confidence 367899999775
No 53
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=26.28 E-value=37 Score=18.04 Aligned_cols=12 Identities=25% Similarity=0.805 Sum_probs=9.3
Q ss_pred eeeeEeCCCCCC
Q 036914 25 RQIWEFDPKAGS 36 (68)
Q Consensus 25 RQ~WEFDp~~Gt 36 (68)
-.+|.||++.++
T Consensus 19 nd~~~~~~~~~~ 30 (49)
T PF13415_consen 19 NDVWVFDLDTNT 30 (49)
T ss_pred cCEEEEECCCCE
Confidence 378999998764
No 54
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=25.96 E-value=66 Score=24.67 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=25.1
Q ss_pred eecCCccceeeeEeCCCCCCHHHH-HHHHHHHHHHhh
Q 036914 17 FTTNNFVGRQIWEFDPKAGSPEEL-AEVEEARQKFYK 52 (68)
Q Consensus 17 ~S~Nn~vGRQ~WEFDp~~GtpeEr-a~VE~aR~~F~~ 52 (68)
.+.|-.-|.-++++- ..|++|. +.|+.||+.|..
T Consensus 2 ~~~~P~t~~~i~~~~--~~~~~~v~~av~~A~~a~~~ 36 (455)
T cd07148 2 EVVNPFDLKPIGEVP--TVDWAAIDKALDTAHALFLD 36 (455)
T ss_pred CccCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHhh
Confidence 345667788888876 4566665 689999999975
No 55
>KOG1621 consensus 1D-myo-inositol-triphosphate 3-kinase A [Lipid transport and metabolism]
Probab=25.84 E-value=37 Score=27.99 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=12.1
Q ss_pred EeCCCCCCHHHHHH
Q 036914 29 EFDPKAGSPEELAE 42 (68)
Q Consensus 29 EFDp~~GtpeEra~ 42 (68)
.-||++-|+||+|+
T Consensus 291 avDp~aPTeEE~aq 304 (458)
T KOG1621|consen 291 AVDPDAPTEEERAQ 304 (458)
T ss_pred ccCCCCCCHHHhhc
Confidence 45999999999985
No 56
>CHL00027 rps15 ribosomal protein S15
Probab=25.59 E-value=1.1e+02 Score=19.95 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=18.9
Q ss_pred EeCCCCCCHHHHHH-----HHHHHHHHhhccC
Q 036914 29 EFDPKAGSPEELAE-----VEEARQKFYKNRH 55 (68)
Q Consensus 29 EFDp~~GtpeEra~-----VE~aR~~F~~nRf 55 (68)
|.+.|.||||-+.+ |...-++|..|+-
T Consensus 14 ~~~~DTGS~evQiA~LT~rI~~Lt~Hlk~hkK 45 (90)
T CHL00027 14 EKEENRGSVEFQVFSFTNKIRRLTSHLELHKK 45 (90)
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHHHHCCC
Confidence 56778999998854 5555666666553
No 57
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=25.37 E-value=57 Score=18.52 Aligned_cols=18 Identities=11% Similarity=0.350 Sum_probs=14.2
Q ss_pred ceeecCCccceeeeEeCC
Q 036914 15 YMFTTNNFVGRQIWEFDP 32 (68)
Q Consensus 15 ~L~S~Nn~vGRQ~WEFDp 32 (68)
.|.+.++.-+.|.|.|++
T Consensus 25 ~~~~c~~~~~~Q~W~~~~ 42 (124)
T cd00161 25 QLYPCHGNGNNQKWTLTS 42 (124)
T ss_pred EEEECCCCCccCCEEEeC
Confidence 467776665789999998
No 58
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=25.02 E-value=62 Score=16.85 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=12.5
Q ss_pred eeecCCccceee-eEeCCC
Q 036914 16 MFTTNNFVGRQI-WEFDPK 33 (68)
Q Consensus 16 L~S~Nn~vGRQ~-WEFDp~ 33 (68)
|.+.-...|+.+ |+||+.
T Consensus 7 l~~~~d~~G~~~~y~YD~~ 25 (38)
T PF05593_consen 7 LTSVTDPDGRTTRYTYDAA 25 (38)
T ss_pred EEEEEcCCCCEEEEEECCC
Confidence 444446777776 999976
No 59
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=24.89 E-value=79 Score=17.47 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhccCCcCCc
Q 036914 42 EVEEARQKFYKNRHNVKPA 60 (68)
Q Consensus 42 ~VE~aR~~F~~nRf~~k~S 60 (68)
+|++-|+.|-.|+...+.+
T Consensus 15 ~v~~r~~~~G~N~l~~~~~ 33 (64)
T smart00831 15 EAARRLERYGPNELPPPKK 33 (64)
T ss_pred HHHHHHHHhCCCCCCCCCC
Confidence 5899999999999877654
No 60
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=24.88 E-value=45 Score=26.14 Aligned_cols=19 Identities=53% Similarity=0.900 Sum_probs=15.8
Q ss_pred eeEeCCCCCCHHHHHHHHHH
Q 036914 27 IWEFDPKAGSPEELAEVEEA 46 (68)
Q Consensus 27 ~WEFDp~~GtpeEra~VE~a 46 (68)
-||+-|+.| .||.++||+-
T Consensus 151 g~~~~~~~~-~eE~eEVe~e 169 (294)
T KOG2881|consen 151 GWEMSPSEG-QEELEEVEAE 169 (294)
T ss_pred hhcCCCccc-hhhHHHHHHH
Confidence 499999988 8888888763
No 61
>PF03842 Silic_transp: Silicon transporter; InterPro: IPR004693 Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterised member of the family (Sit1) functions in the energy-dependent uptake of either silicic acid [Si(OH)4] or silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms, which make their "glass houses" out of silicon.
Probab=24.81 E-value=13 Score=30.92 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=20.0
Q ss_pred eEeCCC-CCCHHHHHHHHHHHHHHhhcc
Q 036914 28 WEFDPK-AGSPEELAEVEEARQKFYKNR 54 (68)
Q Consensus 28 WEFDp~-~GtpeEra~VE~aR~~F~~nR 54 (68)
.+||.- -||||||+..+++-.++...+
T Consensus 426 ~q~DevYvgt~eer~~~~~~d~~~~~~~ 453 (512)
T PF03842_consen 426 FQYDEVYVGTAEERAANDKADKEMHSGA 453 (512)
T ss_pred CCccceEeCCHHHhhcccCCccccccCc
Confidence 345665 499999999888777776543
No 62
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=24.72 E-value=37 Score=17.38 Aligned_cols=10 Identities=30% Similarity=1.126 Sum_probs=6.5
Q ss_pred ceeeeEeCCC
Q 036914 24 GRQIWEFDPK 33 (68)
Q Consensus 24 GRQ~WEFDp~ 33 (68)
|.+.|.|+-.
T Consensus 1 G~~~W~~~~~ 10 (40)
T PF13570_consen 1 GKVLWSYDTG 10 (40)
T ss_dssp S-EEEEEE-S
T ss_pred CceeEEEECC
Confidence 7889999754
No 63
>PF09252 Feld-I_B: Allergen Fel d I-B chain; InterPro: IPR015332 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans. The nomenclature system uses the first three letters of the genus, followed by the first letter of the species name, followed by a number (additional letters can be added to the name as required to discriminate between similar designations). Fel d 1 is allergen 1 from Felis silvestris catus (Cat), which is an important agent in human allergic reactions []. The protein is expressed in saliva and sebaceous glands. The complete primary structure of Fel d 1 has been determined []. The allergen is tetrameric glycoprotein consisting of two disulphide-linked heterodimers of chains 1 and 2, which have been shown to be encoded by different genes. Fel d 1 chains 1 and 2 share structural similarity with uteroglobin, a secretoglobin superfamily member; chain 2 is a glycoprotein with N-linked oligosaccharides. This entry represents Fel d 1 chain 2.; GO: 0005615 extracellular space; PDB: 1ZKR_B 1PUO_B 2EJN_B.
Probab=24.52 E-value=42 Score=21.02 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHhhccCCc
Q 036914 34 AGSPEELAEVEEARQKFYKNRHNV 57 (68)
Q Consensus 34 ~GtpeEra~VE~aR~~F~~nRf~~ 57 (68)
..|++|+++.|+...=|..+....
T Consensus 27 naT~~E~~AfeKIQdCynE~Glk~ 50 (67)
T PF09252_consen 27 NATDEEKEAFEKIQDCYNEEGLKA 50 (67)
T ss_dssp T--HHHHHHHHHHHHHHHHCCHHH
T ss_pred cCChHHHHHHHHHHHHHhccCchh
Confidence 479999999999999998876543
No 64
>PF07985 SRR1: SRR1; InterPro: IPR012942 Sensitivity To Red Light Reduced proteins (SRR1) are signalling proteins thought to be involved in regulating the circadian clock input pathway, which is required for normal oscillator function. In Arabidopsis thaliana it regulates the expression of clock-regulated genes such as CCA1 and TOC1. It is also involved in both the phytochrome B (PHYB) and PHYB-independent signaling pathways [].
Probab=23.88 E-value=1e+02 Score=17.66 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=15.5
Q ss_pred eeeeEeCCCCCCHHHHHHHHH
Q 036914 25 RQIWEFDPKAGSPEELAEVEE 45 (68)
Q Consensus 25 RQ~WEFDp~~GtpeEra~VE~ 45 (68)
-+++-|||-. |+.|++-++.
T Consensus 35 ~~v~~yDPvf-t~~d~~~L~~ 54 (56)
T PF07985_consen 35 DQVSIYDPVF-TEVDKAFLES 54 (56)
T ss_pred CcEEEECCCC-CHHHHHHHHH
Confidence 4899999986 6877776654
No 65
>COG5474 Uncharacterized conserved protein [Function unknown]
Probab=23.18 E-value=80 Score=22.78 Aligned_cols=26 Identities=38% Similarity=0.679 Sum_probs=23.0
Q ss_pred eeEeCCCCCCHHHHHHHHHHHHHHhh
Q 036914 27 IWEFDPKAGSPEELAEVEEARQKFYK 52 (68)
Q Consensus 27 ~WEFDp~~GtpeEra~VE~aR~~F~~ 52 (68)
+-+||-+-|.|-|+.+|-++|.-|..
T Consensus 45 ~i~y~~e~gDpRELsEIPEvRlWF~r 70 (159)
T COG5474 45 IIGYDDEPGDPRELSEIPEVRLWFKR 70 (159)
T ss_pred EEeccCCCCChHHhhhchHHHHHHHH
Confidence 45789889999999999999999964
No 66
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=23.16 E-value=1.1e+02 Score=24.51 Aligned_cols=30 Identities=33% Similarity=0.548 Sum_probs=21.6
Q ss_pred cCCccceeeeEeCCC-------------CCCHHHHHHHHHHHH
Q 036914 19 TNNFVGRQIWEFDPK-------------AGSPEELAEVEEARQ 48 (68)
Q Consensus 19 ~Nn~vGRQ~WEFDp~-------------~GtpeEra~VE~aR~ 48 (68)
.-+--||-+|-||-- +.+||=+..||+.++
T Consensus 37 p~~~kgR~YWYfd~p~~~g~~krrYvGp~ddpei~~rv~~~K~ 79 (349)
T COG5397 37 PTDRKGRVYWYFDTPDGGGGRKRRYVGPADDPEIAQRVERHKA 79 (349)
T ss_pred ccccCCceEEEEecCCCCCCceecccCCCCCHHHHHHHHHHHH
Confidence 337789999999842 346777777887654
No 67
>COG3575 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.08 E-value=82 Score=23.19 Aligned_cols=30 Identities=20% Similarity=0.177 Sum_probs=20.2
Q ss_pred eeEeC-CCCCCHHHHHHHHHHHHHHhhccCC
Q 036914 27 IWEFD-PKAGSPEELAEVEEARQKFYKNRHN 56 (68)
Q Consensus 27 ~WEFD-p~~GtpeEra~VE~aR~~F~~nRf~ 56 (68)
+=-|| ++..-.+|.+..-++.+.|..+|+.
T Consensus 61 v~yFD~~dls~e~e~~~~kkl~~~f~~~~~~ 91 (184)
T COG3575 61 VIYFDDADLSYEAEAALEKKLAEQFPQLRYP 91 (184)
T ss_pred EEEecCcccChHHHHHHHHHHHHhccCCCCc
Confidence 44689 4454455666667799999997743
No 68
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=22.72 E-value=95 Score=20.73 Aligned_cols=14 Identities=36% Similarity=0.714 Sum_probs=10.8
Q ss_pred EeCCCCCCHHHHHH
Q 036914 29 EFDPKAGSPEELAE 42 (68)
Q Consensus 29 EFDp~~GtpeEra~ 42 (68)
..||..||.+|..+
T Consensus 43 ~vd~~~Gt~~d~~~ 56 (316)
T PF00128_consen 43 AVDPRFGTMEDFKE 56 (316)
T ss_dssp EESTTTBHHHHHHH
T ss_pred ccccccchhhhhhh
Confidence 45999999987644
No 69
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=22.02 E-value=1.5e+02 Score=20.82 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=24.1
Q ss_pred eEeCCCCCCHHHHHHHHHHHHHHhhc---cCCcC
Q 036914 28 WEFDPKAGSPEELAEVEEARQKFYKN---RHNVK 58 (68)
Q Consensus 28 WEFDp~~GtpeEra~VE~aR~~F~~n---Rf~~k 58 (68)
++||++. ++.+++.|.+|=+.+.++ ||..+
T Consensus 8 Y~i~~~~-~~~~~~~I~~A~~~~~~~TCirF~~~ 40 (182)
T cd04283 8 YVISPQY-SENERAVIEKAMQEFETLTCVRFVPR 40 (182)
T ss_pred EEECCCC-CHHHHHHHHHHHHHHHhCCceeeEEC
Confidence 6888876 578899999999998776 66544
No 70
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=21.98 E-value=1.1e+02 Score=21.37 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhhccCC
Q 036914 32 PKAGSPEELAEVEEARQKFYKNRHN 56 (68)
Q Consensus 32 p~~GtpeEra~VE~aR~~F~~nRf~ 56 (68)
|-+.||++.+++++.=+.|...|-+
T Consensus 27 p~tysp~~l~~i~~~~~~i~~~~~r 51 (142)
T TIGR03042 27 PPTYSPAQLAQIQRQAEGIEAAKDR 51 (142)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 6688999999998888887776643
No 71
>PF13308 YARHG: YARHG domain
Probab=21.74 E-value=64 Score=19.67 Aligned_cols=28 Identities=14% Similarity=0.434 Sum_probs=18.5
Q ss_pred CCccceeeeEeCCCC----CCHHHHHHHHHHHH
Q 036914 20 NNFVGRQIWEFDPKA----GSPEELAEVEEARQ 48 (68)
Q Consensus 20 Nn~vGRQ~WEFDp~~----GtpeEra~VE~aR~ 48 (68)
+++-+.+.| |.|.. -|+.|++-|+..++
T Consensus 47 ~~yF~~~~W-Y~~~~~~~~l~~~E~~ni~~i~~ 78 (81)
T PF13308_consen 47 QAYFSSKSW-YKPEYSDSVLNEIEKANIDLIKK 78 (81)
T ss_pred HHHHcCCCc-cCCCcccCCCCHHHHHHHHHHHH
Confidence 445566777 44444 68888888887654
No 72
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=21.71 E-value=1.3e+02 Score=17.74 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=19.5
Q ss_pred eeeeEeCCCCCCHHHHHHHHHHHHHH
Q 036914 25 RQIWEFDPKAGSPEELAEVEEARQKF 50 (68)
Q Consensus 25 RQ~WEFDp~~GtpeEra~VE~aR~~F 50 (68)
++.=+|-|.. |++||+.|-++-+.+
T Consensus 16 ~~~l~Fpp~l-s~~eR~~vH~~a~~~ 40 (59)
T cd06007 16 NEEYEFPSSL-TNHERAVIHRLCRKL 40 (59)
T ss_pred ccEEEcCCCC-CHHHHHHHHHHHHHc
Confidence 4667888875 799999998876664
No 73
>PF15056 NRN1: Neuritin protein family
Probab=21.53 E-value=1.1e+02 Score=20.22 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=18.9
Q ss_pred CCCHHHHHHH-HHHHHHHhhccCC
Q 036914 34 AGSPEELAEV-EEARQKFYKNRHN 56 (68)
Q Consensus 34 ~GtpeEra~V-E~aR~~F~~nRf~ 56 (68)
++-|||-|.| |.+|++-.+-+|+
T Consensus 51 a~C~eeAa~iWEsLrqESrk~~f~ 74 (89)
T PF15056_consen 51 ADCPEEAAAIWESLRQESRKMQFQ 74 (89)
T ss_pred hCCcHHHHHHHHHHHHHHHcCCCC
Confidence 5778998776 8999999887775
No 74
>KOG3355 consensus Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins [Posttranslational modification, protein turnover, chaperones]
Probab=21.40 E-value=18 Score=26.47 Aligned_cols=26 Identities=23% Similarity=0.595 Sum_probs=21.0
Q ss_pred cCCccceeeeEe-------CCCCCCHHHHHHHH
Q 036914 19 TNNFVGRQIWEF-------DPKAGSPEELAEVE 44 (68)
Q Consensus 19 ~Nn~vGRQ~WEF-------Dp~~GtpeEra~VE 44 (68)
+++-+||-+|.| =|+--||||+...-
T Consensus 69 ~~eeLGRstWtllHT~aA~yP~~PT~eqk~~~~ 101 (177)
T KOG3355|consen 69 DKEELGRSTWTLLHTLAANYPDRPTPEQKDDMR 101 (177)
T ss_pred hHHHHhHHHHHHHHHHHHhCCCCCChHHHHHHH
Confidence 567799999986 58899999986543
No 75
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=21.39 E-value=81 Score=17.19 Aligned_cols=18 Identities=39% Similarity=0.385 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhccCCc
Q 036914 40 LAEVEEARQKFYKNRHNV 57 (68)
Q Consensus 40 ra~VE~aR~~F~~nRf~~ 57 (68)
..-...+|..|.+|+...
T Consensus 24 ~~~~~~iR~~Fr~n~~~~ 41 (59)
T PF05347_consen 24 EYIRAEIRQEFRKNRNET 41 (59)
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 356889999999999853
No 76
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=21.01 E-value=76 Score=23.30 Aligned_cols=14 Identities=36% Similarity=0.280 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHHHH
Q 036914 34 AGSPEELAEVEEAR 47 (68)
Q Consensus 34 ~GtpeEra~VE~aR 47 (68)
.-|+|||.|||.+.
T Consensus 138 hMSeeER~EaeQLQ 151 (179)
T PF14723_consen 138 HMSEEEREEAEQLQ 151 (179)
T ss_pred cCCHHHHHHHHHHH
Confidence 46899999998754
No 77
>PF13984 MsyB: MsyB protein
Probab=20.72 E-value=92 Score=21.61 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHHHhhcc
Q 036914 35 GSPEELAEVEEARQKFYKNR 54 (68)
Q Consensus 35 GtpeEra~VE~aR~~F~~nR 54 (68)
.|.|| +|+.||++|-.+-
T Consensus 3 aTLeE--AIdAAREefla~~ 20 (122)
T PF13984_consen 3 ATLEE--AIDAAREEFLAAN 20 (122)
T ss_pred chHHH--HHHHHHHHHHHhC
Confidence 46777 8999999998754
No 78
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=20.56 E-value=76 Score=24.64 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=18.6
Q ss_pred CccceeeeEeCCC----------------CCCHHH--HHHHHHHHHHHhh
Q 036914 21 NFVGRQIWEFDPK----------------AGSPEE--LAEVEEARQKFYK 52 (68)
Q Consensus 21 n~vGRQ~WEFDp~----------------~GtpeE--ra~VE~aR~~F~~ 52 (68)
.|+||+.....|. .-+|.| .++|++..++|.+
T Consensus 104 ~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~ 153 (363)
T COG1902 104 WHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFAR 153 (363)
T ss_pred ccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHH
Confidence 5888887655542 223432 2467777777754
No 79
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=20.42 E-value=64 Score=18.75 Aligned_cols=21 Identities=24% Similarity=0.752 Sum_probs=14.5
Q ss_pred CCceeecCCccceeeeEeCCCC
Q 036914 13 SPYMFTTNNFVGRQIWEFDPKA 34 (68)
Q Consensus 13 ~p~L~S~Nn~vGRQ~WEFDp~~ 34 (68)
...|...++ ...|.|.|+++.
T Consensus 26 ~v~l~~c~~-~~~Q~w~~~~~~ 46 (124)
T PF00652_consen 26 PVVLYPCDG-SDNQLWRFDPDG 46 (124)
T ss_dssp BEEEEE--S-SGGGEEEEETTS
T ss_pred EEEEEECCC-CCceeEEEcCCC
Confidence 345888888 666999999883
No 80
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=20.22 E-value=1.6e+02 Score=18.98 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=16.7
Q ss_pred ccceeeeEe-CCC--CCCHHHHH-HHHHHHHH
Q 036914 22 FVGRQIWEF-DPK--AGSPEELA-EVEEARQK 49 (68)
Q Consensus 22 ~vGRQ~WEF-Dp~--~GtpeEra-~VE~aR~~ 49 (68)
.+-+..|.| ||. .||+||+. ..+++|..
T Consensus 90 ~~~~~~w~i~DP~~~~g~~~~~~~~~~~~~~~ 121 (129)
T TIGR02691 90 HVKREHWGLDDPARAEGTEEEKWAVFRRVRDE 121 (129)
T ss_pred CCeEEECCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 344668988 664 36777763 35555544
Done!