Query 036919
Match_columns 132
No_of_seqs 110 out of 746
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_O 50S ribosomal protein L 100.0 2E-43 6.9E-48 262.8 12.2 97 35-131 1-99 (122)
2 1whi_A Ribosomal protein L14; 100.0 2.7E-43 9.2E-48 262.0 11.6 97 35-131 1-99 (122)
3 3bbo_M Ribosomal protein L14; 100.0 2.5E-43 8.5E-48 262.0 10.7 97 35-131 1-99 (121)
4 3r8s_K 50S ribosomal protein L 100.0 3.9E-43 1.3E-47 261.3 11.1 97 35-131 1-100 (122)
5 1vq8_K 50S ribosomal protein L 100.0 3.6E-40 1.2E-44 248.1 11.7 95 34-131 10-110 (132)
6 3j21_J 50S ribosomal protein L 100.0 2.1E-39 7.1E-44 246.3 10.5 96 33-131 18-119 (141)
7 3u5e_V L17A, YL32, 60S ribosom 100.0 1.1E-38 3.6E-43 241.4 10.3 95 34-131 15-115 (137)
8 2ftc_K 39S ribosomal protein L 55.4 14 0.00048 25.9 3.9 32 66-100 5-36 (98)
9 1xe1_A Hypothetical protein PF 48.6 46 0.0016 23.9 5.8 53 35-92 59-113 (116)
10 2qqr_A JMJC domain-containing 46.6 35 0.0012 24.5 5.0 42 63-117 4-45 (118)
11 3h9w_A Diguanylate cyclase wit 42.8 21 0.00072 21.8 3.0 29 99-127 70-98 (115)
12 3r8s_P 50S ribosomal protein L 35.9 35 0.0012 24.5 3.5 34 64-100 18-52 (114)
13 3f1p_A Endothelial PAS domain- 34.0 28 0.00097 21.2 2.5 30 98-127 73-103 (117)
14 3v2d_T 50S ribosomal protein L 33.6 50 0.0017 24.7 4.2 34 64-100 21-55 (146)
15 3f1p_B ARYL hydrocarbon recept 33.3 30 0.001 21.3 2.5 29 99-127 78-107 (121)
16 1v74_A Colicin D; colicin D - 32.9 44 0.0015 23.9 3.6 29 99-127 57-87 (107)
17 3mr0_A Sensory box histidine k 26.1 54 0.0019 21.0 3.0 29 99-127 86-114 (142)
18 3icy_A Sensor protein; sensory 24.4 82 0.0028 18.4 3.4 29 99-127 81-109 (118)
19 3qr8_A GPV, baseplate assembly 24.3 2E+02 0.0069 21.4 6.2 60 29-97 11-84 (211)
20 3ogi_A ESXP, putative ESAT-6-l 23.8 23 0.00078 25.0 0.7 27 3-40 40-68 (101)
21 2xdp_A Lysine-specific demethy 23.0 36 0.0012 24.7 1.7 41 64-117 6-46 (123)
22 3kcp_B Cellulosome anchoring p 22.4 40 0.0014 26.3 1.9 16 62-77 27-42 (187)
23 3bwz_A Cellulosomal scaffoldin 21.8 42 0.0014 26.0 1.9 15 63-77 14-28 (181)
24 2khj_A 30S ribosomal protein S 20.8 1E+02 0.0035 20.5 3.6 14 84-97 29-42 (109)
25 2gix_A Inward rectifier potass 20.4 40 0.0014 26.0 1.5 32 91-125 14-45 (208)
26 2bm3_A Type 2 cohesin, scaffol 20.3 48 0.0016 25.4 1.9 40 62-102 15-62 (166)
No 1
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=100.00 E-value=2e-43 Score=262.78 Aligned_cols=97 Identities=51% Similarity=0.711 Sum_probs=94.8
Q ss_pred ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919 35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD 112 (132)
Q Consensus 35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd 112 (132)
|||.+|+|+|||||||+.++||+++++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++|+||
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~rr~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 3v2d_O 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSAIRFD 80 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEEESTTTCCCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred CCCCCCEEEEeeCCCCcEEEEEEEeCCCCCcccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcEEEcC
Confidence 999999999999999999999999987 789999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCCCCcceeecc
Q 036919 113 DNAVVLIDNLCVLAFAEHT 131 (132)
Q Consensus 113 dNAvVLIn~kg~p~~~~~~ 131 (132)
|||+||||++|+|+|+|+.
T Consensus 81 dNa~Vlin~~~~p~GTrI~ 99 (122)
T 3v2d_O 81 DNAAVIINNQLEPRGTRVF 99 (122)
T ss_dssp SCEEEEECTTSCBSSSCBC
T ss_pred CcEEEEECCCCCEeeeEEE
Confidence 9999999999999999975
No 2
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=100.00 E-value=2.7e-43 Score=262.05 Aligned_cols=97 Identities=44% Similarity=0.635 Sum_probs=95.1
Q ss_pred ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919 35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD 112 (132)
Q Consensus 35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd 112 (132)
|||.+|+|+|||||||+.++||++++| +++|++||+|++|||++.|++++||||+++|||||||++++|+||++|+||
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 1whi_A 1 MIQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSYIRFD 80 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEECSSTTCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCccCEEEEeECCCCcEEEEEEEcCCCcccccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCEEEeC
Confidence 999999999999999999999999997 789999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCCCCcceeecc
Q 036919 113 DNAVVLIDNLCVLAFAEHT 131 (132)
Q Consensus 113 dNAvVLIn~kg~p~~~~~~ 131 (132)
|||+||||++|+|+|+|++
T Consensus 81 dNa~Vlin~~g~p~GTrI~ 99 (122)
T 1whi_A 81 ENACVIIRDDKSPRGTRIF 99 (122)
T ss_dssp SCEEEEECTTSCBSSSCBC
T ss_pred CceEEEECCCCCEeeeEEE
Confidence 9999999999999999975
No 3
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.5e-43 Score=261.99 Aligned_cols=97 Identities=40% Similarity=0.641 Sum_probs=95.0
Q ss_pred ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919 35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD 112 (132)
Q Consensus 35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd 112 (132)
|||.+|+|+|||||||+.++||++++| +++|++||+|++|||++.|++++||||+++|||||||++++|+||++|+||
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~Vlgg~~~r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMIIRYD 80 (121)
T ss_dssp CCCSSCEEEECSSSSEEEEEEEEECSSSCCCCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCEECCS
T ss_pred CCCccCEEEEeeCCCCcEEEEEEEcCCCCccccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCEEEeC
Confidence 999999999999999999999999997 789999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCCCCcceeecc
Q 036919 113 DNAVVLIDNLCVLAFAEHT 131 (132)
Q Consensus 113 dNAvVLIn~kg~p~~~~~~ 131 (132)
|||+||||++|+|+|+|++
T Consensus 81 dNa~Vlin~~g~p~GTrI~ 99 (121)
T 3bbo_M 81 DNAAVIIDQEGNPKGTRIF 99 (121)
T ss_dssp SCEEEECCTTSSCSSSCCC
T ss_pred CceEEEECCCCCEeEeEEE
Confidence 9999999999999999975
No 4
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=100.00 E-value=3.9e-43 Score=261.26 Aligned_cols=97 Identities=47% Similarity=0.690 Sum_probs=94.7
Q ss_pred ccccCCeEEEeeccCcceEEEEEeeCC--eeeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEec
Q 036919 35 FIQMRTVLKVADNSGVKTVMCIQPLKG--KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFD 112 (132)
Q Consensus 35 MIq~~T~L~VaDNSGak~v~CI~vl~g--rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFd 112 (132)
|||.+|+|+|||||||+.++||++|++ +++|++||+|++|||++.|++++||||+++|||||||++++|+||++|+||
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~i~Fd 80 (122)
T 3r8s_K 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFD 80 (122)
T ss_dssp CBCTTCEEEECBTTSEEEEEEEEECSSSSCCCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCEEEES
T ss_pred CCCCCCEEEEccCCCCceEEEEEEeCCCCCCcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcEEEcC
Confidence 999999999999999999999999987 678999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCC-CCcceeecc
Q 036919 113 DNAVVLIDNL-CVLAFAEHT 131 (132)
Q Consensus 113 dNAvVLIn~k-g~p~~~~~~ 131 (132)
|||+||||++ |+|+|+|+.
T Consensus 81 dNa~Vlin~~~g~p~GTrI~ 100 (122)
T 3r8s_K 81 GNACVLLNNNSEQPIGTRIF 100 (122)
T ss_dssp SCEEEEEETTTEEESCSCBC
T ss_pred CceEEEEeCCCCCEeeeEEE
Confidence 9999999999 999999975
No 5
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=100.00 E-value=3.6e-40 Score=248.13 Aligned_cols=95 Identities=35% Similarity=0.462 Sum_probs=90.8
Q ss_pred cccccCCeEEEeeccCcceEEEEEeeC--C--eee--eecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCc
Q 036919 34 TFIQMRTVLKVADNSGVKTVMCIQPLK--G--KKV--ARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGS 107 (132)
Q Consensus 34 ~MIq~~T~L~VaDNSGak~v~CI~vl~--g--rk~--a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~ 107 (132)
.|||.+|+|+|||||||+.++||++++ | +++ |.+||+|++|||++.|++ |||+++|||||||++++|+||+
T Consensus 10 ~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~---kg~v~~AVIVRtkk~~rR~dG~ 86 (132)
T 1vq8_K 10 QGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEM---RRQVLEAVVVRQRKPIRRPDGT 86 (132)
T ss_dssp CCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTSC
T ss_pred cccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCC---CCcEEEEEEEEcCCCcCcCCCc
Confidence 599999999999999999999999998 4 456 999999999999999997 6999999999999999999999
Q ss_pred EEEeccceEEEEcCCCCcceeecc
Q 036919 108 FVKFDDNAVVLIDNLCVLAFAEHT 131 (132)
Q Consensus 108 ~IkFddNAvVLIn~kg~p~~~~~~ 131 (132)
+|+|||||+||||++|+|+|+|++
T Consensus 87 ~i~FddNA~Vlin~~g~p~GTrI~ 110 (132)
T 1vq8_K 87 RVKFEDNAAVIVDENEDPRGTELK 110 (132)
T ss_dssp EEEESSCEEEEECTTSCBSSSCBC
T ss_pred EEEeCCceEEEECCCCCEeEEEEE
Confidence 999999999999999999999975
No 6
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.1e-39 Score=246.28 Aligned_cols=96 Identities=35% Similarity=0.504 Sum_probs=90.7
Q ss_pred hcccccCCeEEEeeccCcceEEEEEeeC--C--ee--eeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCC
Q 036919 33 RTFIQMRTVLKVADNSGVKTVMCIQPLK--G--KK--VARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDG 106 (132)
Q Consensus 33 ~~MIq~~T~L~VaDNSGak~v~CI~vl~--g--rk--~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG 106 (132)
-.|||.+|+|+|||||||+.++||++++ | ++ +|.+||+|++|||++.|++ |||+++|||||||++++|+||
T Consensus 18 ~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~---kg~V~kAVIVRtkk~~rR~dG 94 (141)
T 3j21_J 18 TRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDM---RHQVVRAVIIRQRKEYRRLDG 94 (141)
T ss_dssp CCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTT---TTCEEEEEEEECSSCEECTTS
T ss_pred cceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCC---cCceEEEEEEEeCCccCCCCC
Confidence 4799999999999999999999999998 4 33 5999999999999999998 599999999999999999999
Q ss_pred cEEEeccceEEEEcCCCCcceeecc
Q 036919 107 SFVKFDDNAVVLIDNLCVLAFAEHT 131 (132)
Q Consensus 107 ~~IkFddNAvVLIn~kg~p~~~~~~ 131 (132)
++|+|||||+||||++++|+|+|+.
T Consensus 95 s~i~FddNA~VLin~~g~p~GTRI~ 119 (141)
T 3j21_J 95 MRVKFEDNAAVIVTPEGVPRGTEIR 119 (141)
T ss_dssp CEECCSSCEEEEBCTTSCBCSSCCC
T ss_pred cEEEcCCcEEEEECCCCCEeeeEEE
Confidence 9999999999999999999999975
No 7
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=100.00 E-value=1.1e-38 Score=241.44 Aligned_cols=95 Identities=31% Similarity=0.430 Sum_probs=90.3
Q ss_pred cccccCCeEEEeeccCcceEEEEEeeCC--e----eeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCc
Q 036919 34 TFIQMRTVLKVADNSGVKTVMCIQPLKG--K----KVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGS 107 (132)
Q Consensus 34 ~MIq~~T~L~VaDNSGak~v~CI~vl~g--r----k~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~ 107 (132)
.+||++|+|+|||||||+.++||+++++ + ++|++||+|++|||++.|++ |||+++|||||||++++|+||+
T Consensus 15 ~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~---k~~V~~AVIVRtkk~~rR~dG~ 91 (137)
T 3u5e_V 15 LGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPEL---RKKVMPAIVVRQAKSWRRRDGV 91 (137)
T ss_dssp CCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTT---TTSCEEEEEEECCSCEECTTSC
T ss_pred ccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCC---CCcEEEEEEEEeccccCcCCCe
Confidence 5799999999999999999999999985 3 48999999999999999998 5899999999999999999999
Q ss_pred EEEeccceEEEEcCCCCcceeecc
Q 036919 108 FVKFDDNAVVLIDNLCVLAFAEHT 131 (132)
Q Consensus 108 ~IkFddNAvVLIn~kg~p~~~~~~ 131 (132)
+|+|||||+||||++++|+|+|+.
T Consensus 92 ~i~FddNA~Vlin~~g~p~GTrI~ 115 (137)
T 3u5e_V 92 FLYFEDNAGVIANPKGEMKGSAIT 115 (137)
T ss_dssp EEEESSCEEEEBCTTCCBSSSCBC
T ss_pred EEEcCCceEEEECCCCCEeeeEEE
Confidence 999999999999999999999975
No 8
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=55.43 E-value=14 Score=25.94 Aligned_cols=32 Identities=9% Similarity=0.153 Sum_probs=23.8
Q ss_pred ecCcEEEEEEeeecCCCcccccceEEEEEEecccc
Q 036919 66 RLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMD 100 (132)
Q Consensus 66 ~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~ 100 (132)
.+||+|.|.++-...+. +=|.+.++|+..+..
T Consensus 5 ~~GDtv~V~~~i~g~k~---R~q~F~GvvI~~~~~ 36 (98)
T 2ftc_K 5 YVGSILRVTTADPYASG---KISQFLGICIQRSGR 36 (98)
T ss_pred CCCCEEEEEEEECCCce---EeeeEEEEEEEEECC
Confidence 58999999998653233 348999999986543
No 9
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=48.62 E-value=46 Score=23.90 Aligned_cols=53 Identities=26% Similarity=0.405 Sum_probs=35.3
Q ss_pred ccccCCeEEEeecc-CcceEEEEEeeCC-eeeeecCcEEEEEEeeecCCCcccccceEEE
Q 036919 35 FIQMRTVLKVADNS-GVKTVMCIQPLKG-KKVARLGDTIVVSVKEVMPNAKVKKGEVVKA 92 (132)
Q Consensus 35 MIq~~T~L~VaDNS-Gak~v~CI~vl~g-rk~a~vGD~IivsVKk~~p~~kikKg~V~kA 92 (132)
.|.+++.| |+- -.-.++-|..-.. -..|..||-|-++|+.... -++.|++.+.
T Consensus 59 ~LK~G~~V---Pg~~~vg~VkSIE~~~e~v~eA~~GdnVai~Ikg~~~--~I~~GdVLyv 113 (116)
T 1xe1_A 59 MIGVGFKV---KGPSGIGGIVRIERNREKVEFAIAGDRIGISIEGKIG--KVKKGDVLEI 113 (116)
T ss_dssp EEETTCEE---ECSSCEEEEEEEEETTEEESEEETTCEEEEEEESCCC--CCCTTCEEEE
T ss_pred EEcCCCCc---CCCceEEEEEEEEECCcCcCCcCCCCEEEEEEECCcc--ccCCCcEEEE
Confidence 35667777 433 2344555554222 4579999999999997655 5788888764
No 10
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=46.61 E-value=35 Score=24.54 Aligned_cols=42 Identities=24% Similarity=0.349 Sum_probs=29.0
Q ss_pred eeeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEeccceEE
Q 036919 63 KVARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVV 117 (132)
Q Consensus 63 k~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFddNAvV 117 (132)
+..++||.|++ | .+ -|.-++|.|++.+.+.- ..+.|+||+.-
T Consensus 4 ~~v~vGq~V~a--k---h~----ngryy~~~V~~~~~~~~----y~V~F~DgS~s 45 (118)
T 2qqr_A 4 QSITAGQKVIS--K---HK----NGRFYQCEVVRLTTETF----YEVNFDDGSFS 45 (118)
T ss_dssp SCCCTTCEEEE--E---CT----TSSEEEEEEEEEEEEEE----EEEEETTSCEE
T ss_pred ceeccCCEEEE--E---CC----CCCEEeEEEEEEeeEEE----EEEEcCCCCcc
Confidence 34579999983 2 22 25778999999876643 46888888753
No 11
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=42.77 E-value=21 Score=21.81 Aligned_cols=29 Identities=21% Similarity=0.155 Sum_probs=23.8
Q ss_pred cccccCCCcEEEeccceEEEEcCCCCcce
Q 036919 99 MDHGRCDGSFVKFDDNAVVLIDNLCVLAF 127 (132)
Q Consensus 99 k~~~R~dG~~IkFddNAvVLIn~kg~p~~ 127 (132)
...+++||.+.-+...+.++.+.+|+|..
T Consensus 70 ~r~~~~dG~~~w~~~~~~~~~d~~G~~~~ 98 (115)
T 3h9w_A 70 YRALHRDGHYVWIRDVVHVVRDDSGEVEA 98 (115)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEEcCCCCEEEEEEEEEEEECCCCCEEE
Confidence 34567899988888899999999999864
No 12
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=35.86 E-value=35 Score=24.52 Aligned_cols=34 Identities=26% Similarity=0.228 Sum_probs=24.3
Q ss_pred eeecCcEEEEEEeeecC-CCcccccceEEEEEEecccc
Q 036919 64 VARLGDTIVVSVKEVMP-NAKVKKGEVVKAVVVRAAMD 100 (132)
Q Consensus 64 ~a~vGD~IivsVKk~~p-~~kikKg~V~kAVIVRtKk~ 100 (132)
.-.+||+|.|.++-... +.+ =|.+.++|+..+..
T Consensus 18 ~f~~GDtv~V~~~i~EG~keR---iQ~F~GvvI~~~~~ 52 (114)
T 3r8s_P 18 SFRPGDTVEVKVWVVEGSKKR---LQAFEGVVIAIRNR 52 (114)
T ss_dssp CCCTTCEEEEEEEEEETTEEE---EEEEEEEEEEEECC
T ss_pred ccCCCCEEEEEEEEecCCcee---eeeEEEEEEEEECC
Confidence 45799999999885432 222 37899999986654
No 13
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=33.95 E-value=28 Score=21.17 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=23.8
Q ss_pred ccccccCCCcEEEeccceEEEEcC-CCCcce
Q 036919 98 AMDHGRCDGSFVKFDDNAVVLIDN-LCVLAF 127 (132)
Q Consensus 98 Kk~~~R~dG~~IkFddNAvVLIn~-kg~p~~ 127 (132)
-...+++||.++-+..++..+.++ +|+|.+
T Consensus 73 e~r~~~~dG~~~w~~~~~~~~~d~~~g~~~~ 103 (117)
T 3f1p_A 73 QYRMLAKHGGYVWLETQGTVIYNPRNLQPQC 103 (117)
T ss_dssp CEEEECTTSSEEEEEEEEEEEEETTTTEEEE
T ss_pred EEEEEecCCCEEEEEEeeEEEECCCCCCceE
Confidence 345678899999999999998887 787753
No 14
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=33.55 E-value=50 Score=24.73 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=24.7
Q ss_pred eeecCcEEEEEEeeecC-CCcccccceEEEEEEecccc
Q 036919 64 VARLGDTIVVSVKEVMP-NAKVKKGEVVKAVVVRAAMD 100 (132)
Q Consensus 64 ~a~vGD~IivsVKk~~p-~~kikKg~V~kAVIVRtKk~ 100 (132)
.-.+||+|.|.++-... +.+ =|.+.+||+.-+..
T Consensus 21 ~F~~GDtV~V~~~i~EG~keR---iQ~FeGvVI~rr~~ 55 (146)
T 3v2d_T 21 EFRPGDTVRVSYKVKEGNRTR---IQDFEGIVIRIRRN 55 (146)
T ss_dssp CCCTTCEEEEEEEEECSSCEE---EEEEEEEEEEEECC
T ss_pred CcCCCCEEEEEEEEccCCcee---eeeEEEEEEEEECC
Confidence 45799999999985432 222 37899999986654
No 15
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=33.26 E-value=30 Score=21.30 Aligned_cols=29 Identities=0% Similarity=0.071 Sum_probs=23.1
Q ss_pred cccccCCCcEEEeccceEEEEcC-CCCcce
Q 036919 99 MDHGRCDGSFVKFDDNAVVLIDN-LCVLAF 127 (132)
Q Consensus 99 k~~~R~dG~~IkFddNAvVLIn~-kg~p~~ 127 (132)
...+++||.++-+..++..+.|+ +|+|.+
T Consensus 78 ~r~~~~dG~~~w~~~~~~~~~~~~~g~~~~ 107 (121)
T 3f1p_B 78 FRFRSKNQEWLWMRTSSFTFQNPYSDEIEY 107 (121)
T ss_dssp EEEECTTSCEEEEEEEEEEECCTTCCCCCE
T ss_pred EEEEecCCCEEEEEEEEEEEECCCCCceeE
Confidence 34578899999999999988887 677754
No 16
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=32.89 E-value=44 Score=23.92 Aligned_cols=29 Identities=28% Similarity=0.175 Sum_probs=23.7
Q ss_pred cccccCCCcEEEe--ccceEEEEcCCCCcce
Q 036919 99 MDHGRCDGSFVKF--DDNAVVLIDNLCVLAF 127 (132)
Q Consensus 99 k~~~R~dG~~IkF--ddNAvVLIn~kg~p~~ 127 (132)
-.+|+..++++.| ..|-+|+++++|+-++
T Consensus 57 GTYR~~~dskVy~N~~T~~~Viid~~g~Fvs 87 (107)
T 1v74_A 57 GTYRREKGSKVYFNPNTMNVVIIKSNGEFLS 87 (107)
T ss_dssp CBCTTSTTCEEEECTTTCEEEEECTTSCEEE
T ss_pred eeeecCCCcEEEEeCCCCeEEEEcCCCCEEE
Confidence 3467777899999 7889999999998754
No 17
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=26.11 E-value=54 Score=21.04 Aligned_cols=29 Identities=10% Similarity=-0.026 Sum_probs=23.9
Q ss_pred cccccCCCcEEEeccceEEEEcCCCCcce
Q 036919 99 MDHGRCDGSFVKFDDNAVVLIDNLCVLAF 127 (132)
Q Consensus 99 k~~~R~dG~~IkFddNAvVLIn~kg~p~~ 127 (132)
+..+++||.+.-+...+.++.+++|.|..
T Consensus 86 ~r~~~~~G~~~w~~~~~~~~~d~~g~~~~ 114 (142)
T 3mr0_A 86 YRVRTRSGDFRWIQSRGQALWNSAGEPYR 114 (142)
T ss_dssp EEEECTTSCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEE
Confidence 44668899988888888899999999864
No 18
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=24.39 E-value=82 Score=18.43 Aligned_cols=29 Identities=7% Similarity=-0.023 Sum_probs=23.4
Q ss_pred cccccCCCcEEEeccceEEEEcCCCCcce
Q 036919 99 MDHGRCDGSFVKFDDNAVVLIDNLCVLAF 127 (132)
Q Consensus 99 k~~~R~dG~~IkFddNAvVLIn~kg~p~~ 127 (132)
....++||.+.-+...+..+.+.+|.|.+
T Consensus 81 ~r~~~~~g~~~w~~~~~~~~~~~~g~~~~ 109 (118)
T 3icy_A 81 YRIVTPEGKLHWIEDHMRSSFSDDGLFSG 109 (118)
T ss_dssp EEEECTTCCEEEEEEEEEEEECTTSCEEE
T ss_pred EEEECCCCCEEEEEEEEEEEECCCCCEEE
Confidence 44567899888888888889999998863
No 19
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=24.26 E-value=2e+02 Score=21.44 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=35.3
Q ss_pred hHhhhcccccCCeEEEeeccCcceEEE----------EEeeCC----eeeeecCcEEEEEEeeecCCCcccccceEEEEE
Q 036919 29 SQLQRTFIQMRTVLKVADNSGVKTVMC----------IQPLKG----KKVARLGDTIVVSVKEVMPNAKVKKGEVVKAVV 94 (132)
Q Consensus 29 ~~~~~~MIq~~T~L~VaDNSGak~v~C----------I~vl~g----rk~a~vGD~IivsVKk~~p~~kikKg~V~kAVI 94 (132)
...-++||+.++.-.|-+..+--.|++ ....-+ ...-.+||.+++..= -|+.-+++|
T Consensus 11 ~R~l~nlir~G~V~~vd~~~~rvrV~~~~~~t~wl~~~~~~ag~~~~~~~P~vGeqV~v~f~---------~Gd~~~gvV 81 (211)
T 3qr8_A 11 ARALRNMIRTGIIVETDLNAGRCRVQTGGMCTDWLQWLTHRAGRSRTWWAPSVGEQVLILAV---------GGELDTAFV 81 (211)
T ss_dssp HHHHHHHEEEEEEEEEETTTTEEEEEETTEECCCEEECCSCBSSSBCCCCCCTTCEEEEEEC---------CTTTCCEEE
T ss_pred HHHHHhCcEEEEEEEEECCCCEEEEEeCCccceeEEeEcccccCCceEeCCCCCCEEEEEeC---------CCccCccEE
Confidence 344467999999888876655333332 111111 112369999988764 245566777
Q ss_pred Eec
Q 036919 95 VRA 97 (132)
Q Consensus 95 VRt 97 (132)
+..
T Consensus 82 lg~ 84 (211)
T 3qr8_A 82 LPG 84 (211)
T ss_dssp EEE
T ss_pred Eee
Confidence 775
No 20
>3ogi_A ESXP, putative ESAT-6-like protein 6; structural genomics, PSI-2, protein structure initiative; 2.55A {Mycobacterium tuberculosis} PDB: 4gzr_A
Probab=23.85 E-value=23 Score=24.96 Aligned_cols=27 Identities=41% Similarity=0.733 Sum_probs=14.2
Q ss_pred ccccCcccccccccccchhhhhhhHhhHhhhc--ccccCC
Q 036919 3 SFFGGLGSLLSGLLTTSHEMASCNFLSQLQRT--FIQMRT 40 (132)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--MIq~~T 40 (132)
.|+||-||+ +|-|+..++.|+ ||+.+.
T Consensus 40 dFWGGagS~-----------a~qeFit~LgRNFqvIyEQa 68 (101)
T 3ogi_A 40 DFWGGAGSV-----------ACQEFITQLGRNFQVIYEQA 68 (101)
T ss_dssp --------------------CTHHHHHHHHHHHHHHHHTT
T ss_pred hhhcCcccH-----------HHHHHHHHHhhhHHHHHHHH
Confidence 488888874 799999999986 566554
No 21
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=22.99 E-value=36 Score=24.67 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=27.1
Q ss_pred eeecCcEEEEEEeeecCCCcccccceEEEEEEecccccccCCCcEEEeccceEE
Q 036919 64 VARLGDTIVVSVKEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVV 117 (132)
Q Consensus 64 ~a~vGD~IivsVKk~~p~~kikKg~V~kAVIVRtKk~~~R~dG~~IkFddNAvV 117 (132)
..++||.|++ +.+ -|.-++|.|++.+.+.- ..|.|+||+.-
T Consensus 6 ~v~vGq~V~a-----k~~----ngryy~~~V~~~~~~~~----y~V~F~DgS~s 46 (123)
T 2xdp_A 6 VISVGQTVIT-----KHR----NTRYYSCRVMAVTSQTF----YEVMFDDGSFS 46 (123)
T ss_dssp CCCTTCCCCC-----CCC----CCCCCCCEEEEEEEEEE----EEEEETTSCEE
T ss_pred ccccCCEEEE-----ECC----CCcEEeEEEEEEeeEEE----EEEEcCCCCcc
Confidence 4568888771 122 25677888888776443 46888888765
No 22
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=22.41 E-value=40 Score=26.27 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=13.6
Q ss_pred eeeeecCcEEEEEEee
Q 036919 62 KKVARLGDTIVVSVKE 77 (132)
Q Consensus 62 rk~a~vGD~IivsVKk 77 (132)
+-.+.+||+|+.+||-
T Consensus 27 Kt~a~VGdII~ATIki 42 (187)
T 3kcp_B 27 RNKGEVGDILIGTVRI 42 (187)
T ss_dssp CSCCCTTCEEEEEEEE
T ss_pred ccceeeccEEEEEEEE
Confidence 4568999999999984
No 23
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=21.80 E-value=42 Score=26.04 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=13.1
Q ss_pred eeeecCcEEEEEEee
Q 036919 63 KVARLGDTIVVSVKE 77 (132)
Q Consensus 63 k~a~vGD~IivsVKk 77 (132)
-.+++||+|+.+||-
T Consensus 14 t~a~VGdIItATi~v 28 (181)
T 3bwz_A 14 TTASVGEIVTASINI 28 (181)
T ss_dssp SCCCTTCEEEEEEEE
T ss_pred cccccccEEEEEEEe
Confidence 458999999999984
No 24
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=20.84 E-value=1e+02 Score=20.47 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=7.1
Q ss_pred ccccceEEEEEEec
Q 036919 84 VKKGEVVKAVVVRA 97 (132)
Q Consensus 84 ikKg~V~kAVIVRt 97 (132)
.+.|+++.|.|.+.
T Consensus 29 ~~~G~iv~G~V~~v 42 (109)
T 2khj_A 29 NKKGAIVTGKVTAV 42 (109)
T ss_dssp CCSSSEEEEEEEEE
T ss_pred CCCCCEEEEEEEEE
Confidence 34455555555553
No 25
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus}
Probab=20.35 E-value=40 Score=26.01 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=22.3
Q ss_pred EEEEEecccccccCCCcEEEeccceEEEEcCCCCc
Q 036919 91 KAVVVRAAMDHGRCDGSFVKFDDNAVVLIDNLCVL 125 (132)
Q Consensus 91 kAVIVRtKk~~~R~dG~~IkFddNAvVLIn~kg~p 125 (132)
+|+..|-..|.+|.. .|.|.+||+|-. .+|.|
T Consensus 14 ~~vfakisrP~kRa~--tI~FS~~AVI~~-~dG~~ 45 (208)
T 2gix_A 14 HCNVQFINVGEKRNE--TLVFSHNAVIAM-RDGKL 45 (208)
T ss_dssp CBCEEEECCCCSCSC--SEEECSCEEEEE-ETTEE
T ss_pred eEEEEEecCCcccCC--cEEecCeEEEEE-eCCEE
Confidence 566777677776643 699999999854 44544
No 26
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=20.27 E-value=48 Score=25.42 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=24.2
Q ss_pred eeeeecCcEEEEEEeeecCCC--------cccccceEEEEEEecccccc
Q 036919 62 KKVARLGDTIVVSVKEVMPNA--------KVKKGEVVKAVVVRAAMDHG 102 (132)
Q Consensus 62 rk~a~vGD~IivsVKk~~p~~--------kikKg~V~kAVIVRtKk~~~ 102 (132)
+-.+++||+|.++||--.-++ |.-. +|..||=..|-.++.
T Consensus 15 KT~~~VGdII~Atv~vnnI~nfAGYQvNIKYDP-~VLqaVn~~tG~~~~ 62 (166)
T 2bm3_A 15 RNKGEVGDILIGTVRINNIKNFAGFQVNIVYDP-KVLMAVDPETGKEFT 62 (166)
T ss_dssp CSCCCTTCEEEEEEEEESCTTEEEEEEEEECCT-TTEEEECTTTCCBCC
T ss_pred CcceeeCCEEEEEEEEcccccccceEEEEEECc-cceEeecCCcCCccc
Confidence 346799999999998432211 1111 566676665555543
Done!