RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 036919
(132 letters)
>d2j01o1 b.39.1.1 (O:1-122) Ribosomal protein L14 {Thermus
thermophilus [TaxId: 274]}
Length = 122
Score = 109 bits (274), Expect = 9e-33
Identities = 49/88 (55%), Positives = 64/88 (72%), Gaps = 2/88 (2%)
Query: 36 IQMRTVLKVADNSGVKTVMCIQPLKGK--KVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
IQ +T L+VADN+G + +MCI+ LKG K A +GD IV SVKE +P VK+G+VVKAV
Sbjct: 2 IQPQTYLEVADNTGARKIMCIRVLKGSNAKYATVGDVIVASVKEAIPRGAVKEGDVVKAV 61
Query: 94 VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
VVR + R DGS ++FDDNA V+I+N
Sbjct: 62 VVRTKKEIKRPDGSAIRFDDNAAVIINN 89
>d2gyci1 b.39.1.1 (I:2-122) Ribosomal protein L14 {Escherichia coli
[TaxId: 562]}
Length = 121
Score = 104 bits (262), Expect = 7e-31
Identities = 46/88 (52%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query: 36 IQMRTVLKVADNSGVKTVMCIQPLKGK--KVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
IQ +T+L VADNSG + VMCI+ L G + A +GD I +++KE +P KVKKG+V+KAV
Sbjct: 1 IQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIKEAIPRGKVKKGDVLKAV 60
Query: 94 VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
VVR R DGS ++FD NA VL++N
Sbjct: 61 VVRTKKGVRRPDGSVIRFDGNACVLLNN 88
>d1whia_ b.39.1.1 (A:) Ribosomal protein L14 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 122
Score = 100 bits (252), Expect = 3e-29
Identities = 43/88 (48%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 36 IQMRTVLKVADNSGVKTVMCIQPLKGK--KVARLGDTIVVSVKEVMPNAKVKKGEVVKAV 93
IQ + LKVADNSG + V+ I+ L G + A +GD +V +VK+ P VKKG+VVKAV
Sbjct: 2 IQQESRLKVADNSGAREVLVIKVLGGSGRRYANIGDVVVATVKDATPGGVVKKGQVVKAV 61
Query: 94 VVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
VVR R DGS+++FD+NA V+I +
Sbjct: 62 VVRTKRGVRRPDGSYIRFDENACVIIRD 89
>d1vqok1 b.39.1.1 (K:1-132) Ribosomal protein L14 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 132
Score = 96.8 bits (241), Expect = 1e-27
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 36 IQMRTVLKVADNSGVKTVMCIQPLKG------KKVARLGDTIVVSVKEVMPNAKVKKGEV 89
++ +++ ADN+G + + I A LGD I VSV + P + +V
Sbjct: 12 LEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPE---MRRQV 68
Query: 90 VKAVVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
++AVVVR R DG+ VKF+DNA V++D
Sbjct: 69 LEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDE 100
>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 248
Score = 31.4 bits (69), Expect = 0.021
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 55 CIQ-PLKGKKVARLGDTI 71
CIQ P +GKKV +GD+I
Sbjct: 1 CIQHPWQGKKVGYIGDSI 18
>d2g9da1 c.56.5.7 (A:3-342) Succinylglutamate desuccinylase AstE
{Vibrio cholerae [TaxId: 666]}
Length = 340
Score = 26.1 bits (57), Expect = 1.4
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 60 KGKKVARLGDTIVVSVKE----VMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNA 115
G+ GD +++ E V PN KV G+ RAA+ + + +++D+
Sbjct: 287 HGEVFGHDGDKPLMAKNEGEAIVFPNRKVAIGQ-------RAALMVCKVN---TRYEDDQ 336
Query: 116 VV 117
+V
Sbjct: 337 LV 338
>d1yw6a1 c.56.5.7 (A:1-322) Succinylglutamate desuccinylase AstE
{Escherichia coli [TaxId: 562]}
Length = 322
Score = 26.2 bits (57), Expect = 1.6
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 60 KGKKVARLGDTIVVSVKE----VMPNAKVKKGEVVKAVVVRAA 98
KG +A+ G+ + + PN V G ++ + +
Sbjct: 280 KGTLLAQDGEERFTVTHDVEYVLFPNPLVALGLRAGLMLEKIS 322
>d2bcoa1 c.56.5.7 (A:4-342) Succinylglutamate desuccinylase AstE
{Vibrio parahaemolyticus [TaxId: 670]}
Length = 339
Score = 25.7 bits (56), Expect = 2.2
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 14/62 (22%)
Query: 60 KGKKVARLGDTIVVSVKE----VMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNA 115
G+ GD +++ + V PN V G+ +V +F++
Sbjct: 286 HGEVFGHDGDKPLMAKNDNEAIVFPNRHVAIGQRAALMVCEVK----------TRFEEGE 335
Query: 116 VV 117
+V
Sbjct: 336 LV 337
>d1n93x_ a.206.1.1 (X:) P40 nucleoprotein {Borna disease virus
[TaxId: 12455]}
Length = 343
Score = 25.4 bits (55), Expect = 2.7
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 8 LGSLLSGLLTTSHEMASCNFLSQLQ--RTFIQMRT 40
+GS + LLTT E F+ Q++ ++ QM T
Sbjct: 176 VGSFVLSLLTTDFESPGKEFMDQIKLVASYAQMTT 210
>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 322
Score = 24.8 bits (53), Expect = 3.8
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 6/101 (5%)
Query: 15 LLTTSHEMASCNFLSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLKGKKVARLGDTIVVS 74
LLT HE+ + N ++ I+ +LKV V +K++ + +
Sbjct: 2 LLTVKHELRTANLTGHAEKVGIENFELLKVLGTGAYGKVF-----LVRKISGHDTGKLYA 56
Query: 75 VKEVMPNAKVKKGEVVKAVVV-RAAMDHGRCDGSFVKFDDN 114
+K + V+K + + R ++H R V
Sbjct: 57 MKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYA 97
>d2ix0a3 b.40.4.5 (A:558-644) Exoribonuclease 2, RNB {Escherichia
coli [TaxId: 562]}
Length = 87
Score = 23.6 bits (51), Expect = 4.5
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 60 KGKKVARLGDTIVVSVKEV 78
KG+ V ++ D I V++ EV
Sbjct: 56 KGETVYKVTDVIDVTIAEV 74
>d1yw4a1 c.56.5.7 (A:2-332) Succinylglutamate desuccinylase AstE
{Chromobacterium violaceum [TaxId: 536]}
Length = 331
Score = 24.6 bits (53), Expect = 4.8
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 4/32 (12%)
Query: 60 KGKKVARLGDTIVVSVKE----VMPNAKVKKG 87
G +A G + + PN VK G
Sbjct: 286 DGMLIAEDGAVRYQATGGEERILFPNPAVKPG 317
>d1vl1a_ c.124.1.1 (A:) 6-phosphogluconolactonase {Thermotoga
maritima [TaxId: 2336]}
Length = 218
Score = 24.1 bits (51), Expect = 7.3
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 91 KAVVVRAAMDHGRCDGSFVKFDDNAVVLID 120
K + + FV+ + V +
Sbjct: 188 KINRLTEILKDTPLPAYFVRGKEKTVWFVG 217
>d1yvca1 b.40.4.12 (A:1-69) Hypothetical protein MMP0076
{Methanococcus maripaludis [TaxId: 39152]}
Length = 69
Score = 22.7 bits (49), Expect = 7.7
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 76 KEVMPNAKVKKGEVVKAVVVRAAMDHGRCDGSFVKFDDNAVVLIDN 121
K M N V+ G+ + + M G G + D VV + N
Sbjct: 5 KPAMKNVPVEAGKEYEVTIED--MGKG---GDGIARIDGFVVFVPN 45
>d2gdta1 d.346.1.1 (A:2-116) Nsp1 {SARS coronavirus [TaxId:
227859]}
Length = 115
Score = 23.5 bits (50), Expect = 8.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 28 LSQLQRTFIQMRTVLKVADNSGVKTVMCIQPLKGKKVARLGDTIVVSVKEV 78
L QL++ ++ ++ ++ N G K V + + G + R G T+ V V V
Sbjct: 49 LPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLVPHV 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.387
Gapped
Lambda K H
0.267 0.0349 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 440,767
Number of extensions: 17535
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 17
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.3 bits)