Query 036921
Match_columns 527
No_of_seqs 196 out of 1437
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:43:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02765 pyruvate kinase 100.0 1E-136 3E-141 1098.7 61.9 517 1-527 1-526 (526)
2 PLN02461 Probable pyruvate kin 100.0 6E-135 1E-139 1086.0 60.1 505 12-526 4-511 (511)
3 PTZ00066 pyruvate kinase; Prov 100.0 2E-132 4E-137 1065.3 59.1 485 11-526 20-513 (513)
4 PLN02762 pyruvate kinase compl 100.0 2E-131 5E-136 1057.5 58.6 469 27-526 24-509 (509)
5 PRK09206 pyruvate kinase; Prov 100.0 1E-128 3E-133 1031.6 57.9 464 27-525 1-470 (470)
6 PRK06247 pyruvate kinase; Prov 100.0 2E-128 5E-133 1029.1 57.8 463 26-526 3-471 (476)
7 COG0469 PykF Pyruvate kinase [ 100.0 1E-127 2E-132 1018.3 54.8 468 26-525 3-477 (477)
8 PRK06354 pyruvate kinase; Prov 100.0 8E-126 2E-130 1036.7 58.1 467 26-526 6-479 (590)
9 cd00288 Pyruvate_Kinase Pyruva 100.0 9E-126 2E-130 1015.7 57.6 472 27-525 1-480 (480)
10 PRK05826 pyruvate kinase; Prov 100.0 2E-123 3E-128 995.2 55.6 453 27-514 3-458 (465)
11 PLN02623 pyruvate kinase 100.0 2E-120 4E-125 980.3 57.7 463 26-525 108-579 (581)
12 PTZ00300 pyruvate kinase; Prov 100.0 6E-119 1E-123 953.9 54.3 446 54-526 1-454 (454)
13 TIGR01064 pyruv_kin pyruvate k 100.0 5E-117 1E-121 951.9 55.6 465 28-522 1-473 (473)
14 KOG2323 Pyruvate kinase [Carbo 100.0 5E-117 1E-121 930.8 46.9 477 23-525 16-501 (501)
15 PF00224 PK: Pyruvate kinase, 100.0 3E-104 7E-109 824.8 33.9 342 27-380 1-348 (348)
16 PRK06739 pyruvate kinase; Vali 100.0 8E-103 2E-107 807.3 40.3 332 29-376 2-334 (352)
17 PRK14725 pyruvate kinase; Prov 100.0 2.1E-91 4.6E-96 754.2 41.8 337 17-374 131-597 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 5.8E-89 1.3E-93 731.0 40.0 337 17-373 125-479 (493)
19 PF02887 PK_C: Pyruvate kinase 99.9 1.3E-26 2.7E-31 206.1 14.3 112 394-524 1-117 (117)
20 TIGR03239 GarL 2-dehydro-3-deo 99.6 8.8E-16 1.9E-20 153.7 10.0 132 203-351 68-234 (249)
21 PRK10558 alpha-dehydro-beta-de 99.6 1.1E-15 2.3E-20 153.7 9.9 133 202-351 74-241 (256)
22 PRK10128 2-keto-3-deoxy-L-rham 99.6 3.8E-15 8.3E-20 150.3 10.3 133 204-351 75-241 (267)
23 COG3836 HpcH 2,4-dihydroxyhept 99.6 2E-14 4.3E-19 139.5 10.9 134 201-351 71-240 (255)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.5 3E-14 6.6E-19 142.8 9.1 132 205-351 70-235 (249)
25 PF03328 HpcH_HpaI: HpcH/HpaI 99.4 9E-14 1.9E-18 136.7 5.2 104 207-312 73-189 (221)
26 TIGR01418 PEP_synth phosphoeno 99.3 3.2E-11 6.8E-16 138.5 13.6 151 202-372 609-782 (782)
27 PRK06464 phosphoenolpyruvate s 99.2 8E-11 1.7E-15 135.2 13.9 150 203-373 617-790 (795)
28 TIGR01588 citE citrate lyase, 99.2 6.4E-11 1.4E-15 121.3 9.7 134 205-346 71-220 (288)
29 TIGR01417 PTS_I_fam phosphoeno 99.1 1.2E-09 2.5E-14 121.4 14.5 135 201-347 365-525 (565)
30 PRK11177 phosphoenolpyruvate-p 98.9 3.7E-09 7.9E-14 117.5 10.7 135 201-347 366-526 (575)
31 cd00727 malate_synt_A Malate s 98.7 2.8E-07 6.1E-12 100.3 16.6 254 18-359 57-350 (511)
32 TIGR01344 malate_syn_A malate 98.6 6.3E-07 1.4E-11 97.5 15.9 255 18-359 57-351 (511)
33 COG2301 CitE Citrate lyase bet 98.6 9.3E-08 2E-12 97.1 7.5 136 205-346 66-212 (283)
34 PRK09255 malate synthase; Vali 98.5 3.2E-06 6.9E-11 92.6 17.5 254 18-359 78-371 (531)
35 cd00480 malate_synt Malate syn 98.4 1.4E-05 3E-10 87.8 18.8 128 220-347 184-345 (511)
36 PLN02626 malate synthase 98.2 3E-05 6.4E-10 84.7 16.3 253 18-347 81-372 (551)
37 PF02896 PEP-utilizers_C: PEP- 98.2 1.9E-05 4.2E-10 81.1 12.5 135 202-348 119-279 (293)
38 PRK11061 fused phosphoenolpyru 97.1 0.0017 3.8E-08 75.0 9.1 133 202-347 532-692 (748)
39 TIGR01828 pyru_phos_dikin pyru 96.7 0.013 2.8E-07 68.6 12.3 135 202-347 670-850 (856)
40 PRK08649 inosine 5-monophospha 96.7 0.019 4.2E-07 61.0 12.3 115 215-347 149-285 (368)
41 COG1080 PtsA Phosphoenolpyruva 96.6 0.0083 1.8E-07 66.2 9.5 132 203-347 369-527 (574)
42 TIGR02751 PEPCase_arch phospho 96.6 0.014 2.9E-07 64.1 10.9 93 220-312 122-247 (506)
43 PRK13655 phosphoenolpyruvate c 96.0 0.036 7.9E-07 60.7 10.0 95 218-312 119-239 (494)
44 PRK09279 pyruvate phosphate di 95.9 0.054 1.2E-06 63.6 11.6 143 194-347 666-856 (879)
45 PF00478 IMPDH: IMP dehydrogen 95.7 0.17 3.6E-06 53.6 13.0 123 207-347 108-240 (352)
46 cd00381 IMPDH IMPDH: The catal 95.6 0.23 5E-06 52.0 13.8 124 206-347 93-226 (325)
47 TIGR01304 IMP_DH_rel_2 IMP deh 95.6 0.081 1.8E-06 56.3 10.4 112 215-347 150-284 (369)
48 PRK00009 phosphoenolpyruvate c 95.2 0.13 2.8E-06 60.7 11.6 143 219-368 485-663 (911)
49 COG3605 PtsP Signal transducti 95.0 0.13 2.9E-06 56.9 9.8 137 218-371 556-718 (756)
50 TIGR01305 GMP_reduct_1 guanosi 94.7 0.46 1E-05 49.8 12.7 126 204-347 104-241 (343)
51 PRK13125 trpA tryptophan synth 94.1 1.5 3.3E-05 43.9 14.5 113 212-347 94-214 (244)
52 PLN02274 inosine-5'-monophosph 94.0 0.51 1.1E-05 52.4 11.9 124 205-347 246-380 (505)
53 cd03174 DRE_TIM_metallolyase D 93.8 7.4 0.00016 38.7 19.1 195 203-420 15-225 (265)
54 PTZ00314 inosine-5'-monophosph 93.7 1.2 2.6E-05 49.5 14.1 124 205-347 239-373 (495)
55 PTZ00398 phosphoenolpyruvate c 93.5 0.44 9.6E-06 56.7 10.8 139 221-359 546-709 (974)
56 TIGR01302 IMP_dehydrog inosine 93.3 1 2.2E-05 49.4 12.7 124 205-347 222-356 (450)
57 TIGR01306 GMP_reduct_2 guanosi 92.8 1 2.2E-05 47.2 11.2 121 204-347 91-227 (321)
58 PRK05096 guanosine 5'-monophos 92.5 2.5 5.5E-05 44.4 13.5 126 204-347 105-242 (346)
59 cd07939 DRE_TIM_NifV Streptomy 92.5 12 0.00027 37.6 18.4 191 203-420 16-217 (259)
60 cd04730 NPD_like 2-Nitropropan 92.4 2.2 4.8E-05 41.9 12.7 113 209-347 70-185 (236)
61 PLN02591 tryptophan synthase 92.2 4.2 9.1E-05 41.2 14.4 114 215-347 101-218 (250)
62 TIGR01361 DAHP_synth_Bsub phos 91.9 2.8 6E-05 42.7 12.8 90 232-347 75-166 (260)
63 PRK08883 ribulose-phosphate 3- 91.9 5.7 0.00012 39.3 14.8 137 209-368 71-216 (220)
64 PRK07107 inosine 5-monophospha 91.8 1.9 4E-05 48.0 12.3 119 209-347 244-381 (502)
65 cd02940 DHPD_FMN Dihydropyrimi 91.8 2.2 4.8E-05 44.0 12.2 127 207-350 113-284 (299)
66 cd04740 DHOD_1B_like Dihydroor 91.7 6 0.00013 40.5 15.3 127 207-350 102-263 (296)
67 TIGR03151 enACPred_II putative 91.7 3.1 6.6E-05 43.3 13.1 112 209-347 77-190 (307)
68 COG0574 PpsA Phosphoenolpyruva 91.6 1.2 2.6E-05 51.8 11.1 113 222-347 596-723 (740)
69 PRK06843 inosine 5-monophospha 91.5 3.6 7.8E-05 44.5 13.7 124 205-347 151-285 (404)
70 cd07944 DRE_TIM_HOA_like 4-hyd 91.4 16 0.00034 37.2 17.6 158 190-370 8-180 (266)
71 PRK08318 dihydropyrimidine deh 91.0 3.5 7.7E-05 44.6 13.4 145 207-373 113-303 (420)
72 PRK07807 inosine 5-monophospha 90.9 3.1 6.7E-05 46.0 12.8 128 203-347 223-359 (479)
73 PRK08227 autoinducer 2 aldolas 90.9 4.8 0.0001 41.1 13.2 148 266-438 48-198 (264)
74 TIGR02090 LEU1_arch isopropylm 90.5 18 0.0004 38.4 17.9 164 189-369 9-182 (363)
75 cd00429 RPE Ribulose-5-phospha 90.4 4.6 9.9E-05 38.7 12.3 130 215-363 75-210 (211)
76 PRK00915 2-isopropylmalate syn 90.1 19 0.00041 40.2 18.3 165 189-370 13-191 (513)
77 PRK13397 3-deoxy-7-phosphohept 90.0 9.1 0.0002 38.8 14.3 89 233-347 66-156 (250)
78 TIGR00973 leuA_bact 2-isopropy 89.9 16 0.00035 40.6 17.5 164 189-370 10-188 (494)
79 COG2352 Ppc Phosphoenolpyruvat 89.8 1.2 2.6E-05 51.4 8.7 87 224-310 489-599 (910)
80 PRK06852 aldolase; Validated 89.8 2.1 4.6E-05 44.5 9.8 128 306-437 91-235 (304)
81 CHL00200 trpA tryptophan synth 89.8 7.5 0.00016 39.6 13.6 115 215-347 114-231 (263)
82 PRK08745 ribulose-phosphate 3- 89.7 20 0.00043 35.7 16.3 140 210-369 76-221 (223)
83 PRK07565 dihydroorotate dehydr 89.7 5.7 0.00012 41.7 13.1 142 215-375 122-291 (334)
84 PRK02290 3-dehydroquinate synt 89.5 5.2 0.00011 42.1 12.4 132 206-369 13-160 (344)
85 PRK13398 3-deoxy-7-phosphohept 89.5 14 0.0003 37.8 15.3 153 232-418 77-233 (266)
86 cd00958 DhnA Class I fructose- 89.3 8.6 0.00019 37.9 13.5 133 202-348 16-164 (235)
87 PRK11858 aksA trans-homoaconit 89.1 35 0.00075 36.6 18.8 166 189-370 13-187 (378)
88 PRK05581 ribulose-phosphate 3- 88.8 16 0.00035 35.3 14.9 134 215-366 79-217 (220)
89 PRK07226 fructose-bisphosphate 88.8 12 0.00026 38.0 14.4 98 202-312 34-144 (267)
90 PF00682 HMGL-like: HMGL-like 88.8 25 0.00055 34.5 17.0 194 204-420 11-216 (237)
91 COG1751 Uncharacterized conser 88.7 1.1 2.4E-05 41.7 6.1 49 393-441 11-60 (186)
92 cd02810 DHOD_DHPD_FMN Dihydroo 88.7 7.9 0.00017 39.4 13.1 126 207-347 111-272 (289)
93 PTZ00170 D-ribulose-5-phosphat 88.7 4.3 9.3E-05 40.3 10.8 153 195-369 64-223 (228)
94 PF00311 PEPcase: Phosphoenolp 88.3 1.4 3.1E-05 51.5 8.1 93 220-312 363-481 (794)
95 PRK05567 inosine 5'-monophosph 88.2 7.2 0.00016 43.2 13.3 121 208-347 229-360 (486)
96 PRK12595 bifunctional 3-deoxy- 88.2 7.9 0.00017 41.3 13.0 89 233-347 169-259 (360)
97 PRK05458 guanosine 5'-monophos 88.1 11 0.00025 39.5 13.9 126 205-348 95-231 (326)
98 PF01959 DHQS: 3-dehydroquinat 88.0 6.1 0.00013 41.8 11.7 133 209-369 15-169 (354)
99 PRK13813 orotidine 5'-phosphat 88.0 8.1 0.00018 37.6 12.1 128 216-369 76-214 (215)
100 PRK15452 putative protease; Pr 87.8 6.4 0.00014 43.1 12.3 116 207-351 11-145 (443)
101 PRK15447 putative protease; Pr 87.7 6.9 0.00015 40.5 12.0 117 207-351 15-142 (301)
102 cd07945 DRE_TIM_CMS Leptospira 87.4 27 0.00058 35.9 16.0 206 189-420 6-226 (280)
103 PRK13307 bifunctional formalde 87.2 8.4 0.00018 41.5 12.5 128 215-367 245-378 (391)
104 TIGR02660 nifV_homocitr homoci 87.1 22 0.00048 37.8 15.7 165 189-370 10-184 (365)
105 PRK09722 allulose-6-phosphate 87.1 35 0.00075 34.1 17.0 139 209-370 72-222 (229)
106 cd04726 KGPDC_HPS 3-Keto-L-gul 87.0 14 0.00029 35.3 12.9 124 215-361 72-200 (202)
107 PRK09389 (R)-citramalate synth 86.8 53 0.0011 36.5 18.9 164 189-369 11-184 (488)
108 PLN02321 2-isopropylmalate syn 86.8 30 0.00065 39.7 17.2 169 189-369 95-281 (632)
109 PRK04302 triosephosphate isome 86.6 17 0.00037 35.7 13.6 130 215-363 80-218 (223)
110 TIGR01163 rpe ribulose-phospha 86.6 16 0.00035 35.0 13.2 128 215-361 74-207 (210)
111 PF14010 PEPcase_2: Phosphoeno 86.2 1.4 3E-05 48.5 6.0 146 219-369 119-300 (491)
112 cd04722 TIM_phosphate_binding 86.0 9.6 0.00021 35.2 11.0 113 215-347 79-199 (200)
113 PRK01130 N-acetylmannosamine-6 85.6 13 0.00029 36.2 12.3 118 209-349 78-204 (221)
114 TIGR00262 trpA tryptophan synt 85.2 19 0.0004 36.5 13.3 114 215-347 110-227 (256)
115 PLN02334 ribulose-phosphate 3- 85.1 28 0.00061 34.3 14.4 141 207-370 78-225 (229)
116 TIGR03128 RuMP_HxlA 3-hexulose 84.8 38 0.00082 32.5 14.9 135 211-366 68-205 (206)
117 PRK07259 dihydroorotate dehydr 84.8 16 0.00036 37.5 13.0 144 207-373 104-283 (301)
118 cd00945 Aldolase_Class_I Class 84.5 35 0.00076 31.8 15.2 126 205-347 11-149 (201)
119 cd00640 Trp-synth-beta_II Tryp 84.4 42 0.0009 33.1 15.3 117 297-438 63-186 (244)
120 TIGR01303 IMP_DH_rel_1 IMP deh 83.7 17 0.00037 40.2 13.2 124 204-348 222-358 (475)
121 PRK07028 bifunctional hexulose 83.6 29 0.00063 37.7 14.9 136 211-368 73-211 (430)
122 PF00478 IMPDH: IMP dehydrogen 83.5 2.3 4.9E-05 45.1 6.1 53 27-79 94-146 (352)
123 TIGR01037 pyrD_sub1_fam dihydr 83.5 56 0.0012 33.5 16.3 131 220-373 118-283 (300)
124 cd00945 Aldolase_Class_I Class 83.4 39 0.00084 31.5 15.4 121 307-438 48-178 (201)
125 PRK13396 3-deoxy-7-phosphohept 83.4 47 0.001 35.4 15.7 101 233-359 152-257 (352)
126 PRK07695 transcriptional regul 82.6 18 0.00039 34.8 11.6 125 216-368 69-198 (201)
127 cd00331 IGPS Indole-3-glycerol 82.6 31 0.00067 33.5 13.4 125 211-361 86-215 (217)
128 cd04739 DHOD_like Dihydroorota 82.2 33 0.00072 35.9 14.2 145 208-376 113-290 (325)
129 PRK05692 hydroxymethylglutaryl 82.2 65 0.0014 33.2 16.0 165 189-369 13-196 (287)
130 PF00290 Trp_syntA: Tryptophan 82.0 18 0.00039 36.8 11.7 114 215-347 110-226 (259)
131 cd07940 DRE_TIM_IPMS 2-isoprop 82.0 61 0.0013 32.8 18.3 154 204-369 17-184 (268)
132 cd04732 HisA HisA. Phosphorib 81.1 30 0.00066 33.8 12.8 128 209-358 85-230 (234)
133 PRK09250 fructose-bisphosphate 80.9 16 0.00034 38.8 11.0 172 222-415 36-236 (348)
134 TIGR00612 ispG_gcpE 1-hydroxy- 80.9 14 0.0003 39.0 10.4 141 209-366 37-187 (346)
135 COG0826 Collagenase and relate 80.4 34 0.00073 36.4 13.4 117 206-351 13-148 (347)
136 PRK02048 4-hydroxy-3-methylbut 80.3 45 0.00099 37.8 14.8 175 187-367 22-223 (611)
137 COG1465 Predicted alternative 79.8 40 0.00086 35.0 12.9 101 249-373 95-195 (376)
138 TIGR00977 LeuA_rel 2-isopropyl 79.5 44 0.00094 37.6 14.7 170 189-370 10-196 (526)
139 cd00959 DeoC 2-deoxyribose-5-p 79.1 14 0.00029 35.9 9.4 143 202-368 12-172 (203)
140 PRK13210 putative L-xylulose 5 79.0 56 0.0012 32.7 14.2 137 215-360 24-197 (284)
141 PLN02495 oxidoreductase, actin 78.8 96 0.0021 33.5 16.4 149 204-375 124-322 (385)
142 PF03102 NeuB: NeuB family; I 78.4 22 0.00047 35.8 10.8 99 231-357 54-154 (241)
143 TIGR00126 deoC deoxyribose-pho 78.4 26 0.00057 34.5 11.2 142 202-368 13-173 (211)
144 PLN02282 phosphoglycerate kina 78.4 32 0.00069 37.3 12.6 306 29-434 39-372 (401)
145 cd00958 DhnA Class I fructose- 78.3 12 0.00026 36.9 8.8 75 204-286 140-221 (235)
146 PLN02746 hydroxymethylglutaryl 78.1 82 0.0018 33.5 15.4 167 187-369 53-238 (347)
147 cd07938 DRE_TIM_HMGL 3-hydroxy 78.0 85 0.0018 32.0 15.6 168 189-369 7-190 (274)
148 PRK13111 trpA tryptophan synth 77.9 28 0.00061 35.3 11.6 112 215-347 112-228 (258)
149 PRK00694 4-hydroxy-3-methylbut 77.8 19 0.0004 40.6 10.8 175 187-372 26-229 (606)
150 PRK00507 deoxyribose-phosphate 77.6 24 0.00051 35.0 10.7 151 202-367 17-176 (221)
151 PF04551 GcpE: GcpE protein; 77.5 49 0.0011 35.2 13.3 97 208-312 33-136 (359)
152 PRK09250 fructose-bisphosphate 77.4 39 0.00085 35.9 12.7 94 208-312 92-197 (348)
153 PRK05283 deoxyribose-phosphate 76.8 30 0.00064 35.3 11.2 148 202-369 21-189 (257)
154 cd00381 IMPDH IMPDH: The catal 76.5 5 0.00011 42.1 5.8 48 32-79 85-132 (325)
155 PRK08195 4-hyroxy-2-oxovalerat 76.2 1.1E+02 0.0024 32.3 17.2 158 189-370 12-186 (337)
156 PRK11840 bifunctional sulfur c 75.9 40 0.00087 35.5 12.1 81 275-371 221-302 (326)
157 PF03437 BtpA: BtpA family; I 75.7 12 0.00025 38.1 8.0 71 218-297 170-250 (254)
158 COG1830 FbaB DhnA-type fructos 75.6 57 0.0012 33.3 12.8 155 261-438 40-208 (265)
159 COG0119 LeuA Isopropylmalate/h 75.5 88 0.0019 34.0 15.1 167 189-370 11-188 (409)
160 PRK00278 trpC indole-3-glycero 75.2 74 0.0016 32.2 13.8 125 215-363 128-256 (260)
161 PRK00208 thiG thiazole synthas 75.2 70 0.0015 32.5 13.2 70 287-372 159-229 (250)
162 cd04729 NanE N-acetylmannosami 75.1 37 0.00081 33.1 11.3 117 209-347 82-206 (219)
163 TIGR03586 PseI pseudaminic aci 74.8 54 0.0012 34.6 12.9 61 267-347 104-168 (327)
164 cd04728 ThiG Thiazole synthase 74.7 70 0.0015 32.4 13.0 82 274-371 146-228 (248)
165 PRK06015 keto-hydroxyglutarate 74.7 46 0.001 32.6 11.6 101 228-347 11-124 (201)
166 COG0274 DeoC Deoxyribose-phosp 74.7 28 0.00061 34.7 10.1 149 202-367 19-180 (228)
167 PRK13209 L-xylulose 5-phosphat 74.5 52 0.0011 33.0 12.6 32 215-246 29-70 (283)
168 TIGR03569 NeuB_NnaB N-acetylne 73.4 50 0.0011 34.8 12.3 83 233-342 76-161 (329)
169 PRK00043 thiE thiamine-phospha 73.1 53 0.0012 31.4 11.8 124 215-370 76-211 (212)
170 COG0167 PyrD Dihydroorotate de 73.0 1.2E+02 0.0026 31.9 14.7 146 205-373 107-291 (310)
171 PRK08005 epimerase; Validated 73.0 1E+02 0.0022 30.4 14.9 132 209-363 71-207 (210)
172 cd04724 Tryptophan_synthase_al 72.7 86 0.0019 31.3 13.4 93 209-312 17-134 (242)
173 cd07948 DRE_TIM_HCS Saccharomy 72.5 1.2E+02 0.0025 30.9 17.9 201 188-420 8-219 (262)
174 PRK12344 putative alpha-isopro 72.1 1.7E+02 0.0038 32.8 20.2 170 189-370 14-200 (524)
175 PRK08673 3-deoxy-7-phosphohept 72.0 67 0.0015 34.0 12.9 105 232-362 143-251 (335)
176 COG0031 CysK Cysteine synthase 71.8 1.2E+02 0.0026 31.7 14.4 164 251-438 26-202 (300)
177 PF03060 NMO: Nitronate monoox 71.7 44 0.00095 35.0 11.5 111 210-347 104-219 (330)
178 PRK05096 guanosine 5'-monophos 71.6 8.1 0.00018 40.8 5.8 49 31-79 98-148 (346)
179 TIGR00007 phosphoribosylformim 71.0 33 0.00072 33.6 9.9 128 207-356 82-227 (230)
180 TIGR01182 eda Entner-Doudoroff 70.8 86 0.0019 30.8 12.5 39 296-347 90-128 (204)
181 cd07941 DRE_TIM_LeuA3 Desulfob 70.7 1.3E+02 0.0027 30.6 18.7 170 189-369 7-192 (273)
182 PRK05718 keto-hydroxyglutarate 70.6 79 0.0017 31.2 12.3 107 224-346 18-134 (212)
183 PRK09856 fructoselysine 3-epim 70.5 1E+02 0.0022 30.7 13.6 118 214-337 20-171 (275)
184 PF01645 Glu_synthase: Conserv 70.0 1.1E+02 0.0025 32.7 14.2 151 173-347 136-303 (368)
185 PF01791 DeoC: DeoC/LacD famil 69.7 33 0.00071 33.9 9.6 151 203-371 14-189 (236)
186 PRK14057 epimerase; Provisiona 69.4 1.4E+02 0.0029 30.5 14.4 137 210-369 89-243 (254)
187 PRK00366 ispG 4-hydroxy-3-meth 69.2 81 0.0017 33.6 12.5 142 208-367 44-197 (360)
188 TIGR01138 cysM cysteine syntha 68.8 1.4E+02 0.0031 30.5 15.0 120 297-440 72-198 (290)
189 PTZ00314 inosine-5'-monophosph 68.7 9.3 0.0002 42.5 6.0 46 34-79 234-279 (495)
190 PF01274 Malate_synthase: Mala 68.7 13 0.00028 41.6 7.0 126 220-347 203-364 (526)
191 PLN02925 4-hydroxy-3-methylbut 68.6 46 0.001 38.4 11.3 180 187-377 91-300 (733)
192 PRK06512 thiamine-phosphate py 68.4 76 0.0016 31.4 11.8 128 216-369 83-214 (221)
193 TIGR01302 IMP_dehydrog inosine 67.9 13 0.00028 40.7 6.9 50 29-78 212-261 (450)
194 TIGR01305 GMP_reduct_1 guanosi 67.7 11 0.00025 39.7 6.0 49 31-79 97-147 (343)
195 cd00452 KDPG_aldolase KDPG and 67.5 1.2E+02 0.0025 29.0 14.7 108 206-347 15-124 (190)
196 PRK06843 inosine 5-monophospha 67.5 8.3 0.00018 41.8 5.1 52 28-79 140-191 (404)
197 PRK00278 trpC indole-3-glycero 67.0 1.1E+02 0.0023 31.1 12.8 106 210-348 73-188 (260)
198 PRK08091 ribulose-phosphate 3- 66.5 1.5E+02 0.0032 29.7 14.7 64 209-278 81-146 (228)
199 cd01561 CBS_like CBS_like: Thi 66.4 1.1E+02 0.0025 31.0 13.1 123 297-440 66-195 (291)
200 PRK06552 keto-hydroxyglutarate 66.2 95 0.0021 30.6 11.9 103 224-346 16-135 (213)
201 cd00954 NAL N-Acetylneuraminic 66.2 60 0.0013 33.2 11.0 95 265-370 26-126 (288)
202 TIGR00736 nifR3_rel_arch TIM-b 65.1 94 0.002 31.1 11.7 121 204-348 77-221 (231)
203 COG0434 SgcQ Predicted TIM-bar 64.7 53 0.0011 33.2 9.6 110 308-434 8-143 (263)
204 cd04742 NPD_FabD 2-Nitropropan 64.5 1.1E+02 0.0023 33.6 12.7 120 210-347 86-248 (418)
205 TIGR01037 pyrD_sub1_fam dihydr 64.3 1.7E+02 0.0038 29.8 14.3 87 250-348 90-190 (300)
206 cd00377 ICL_PEPM Members of th 64.3 48 0.001 33.2 9.6 88 210-312 88-201 (243)
207 cd00408 DHDPS-like Dihydrodipi 64.1 98 0.0021 31.2 12.0 88 273-371 32-123 (281)
208 TIGR00259 thylakoid_BtpA membr 63.8 38 0.00082 34.5 8.7 79 215-298 165-251 (257)
209 cd04737 LOX_like_FMN L-Lactate 63.5 34 0.00073 36.4 8.7 89 231-347 209-305 (351)
210 PRK05286 dihydroorotate dehydr 63.4 69 0.0015 33.8 11.0 119 218-350 167-321 (344)
211 TIGR01859 fruc_bis_ald_ fructo 63.3 1.9E+02 0.004 29.8 14.6 114 251-368 75-197 (282)
212 cd00564 TMP_TenI Thiamine mono 63.2 1.2E+02 0.0026 28.1 11.7 119 215-363 67-194 (196)
213 TIGR00674 dapA dihydrodipicoli 63.0 79 0.0017 32.2 11.1 93 214-312 26-129 (285)
214 PRK07334 threonine dehydratase 62.9 1.1E+02 0.0024 32.9 12.7 116 298-440 85-206 (403)
215 PRK05458 guanosine 5'-monophos 62.5 13 0.00028 39.2 5.3 45 35-79 91-137 (326)
216 cd00405 PRAI Phosphoribosylant 62.5 90 0.0019 30.0 10.9 117 208-351 8-131 (203)
217 KOG2550 IMP dehydrogenase/GMP 61.9 41 0.0009 36.4 8.8 125 205-347 249-383 (503)
218 PRK06381 threonine synthase; V 61.7 1.6E+02 0.0034 30.4 13.2 119 297-440 76-207 (319)
219 TIGR01139 cysK cysteine syntha 61.5 1.2E+02 0.0026 31.0 12.2 122 297-440 70-198 (298)
220 TIGR00674 dapA dihydrodipicoli 61.5 90 0.0019 31.8 11.2 96 266-371 25-124 (285)
221 PLN02274 inosine-5'-monophosph 61.3 14 0.00031 41.1 5.7 51 29-79 236-286 (505)
222 PRK10717 cysteine synthase A; 61.3 1.2E+02 0.0027 31.5 12.4 127 298-440 78-211 (330)
223 PRK03620 5-dehydro-4-deoxygluc 60.9 81 0.0018 32.6 10.9 93 214-312 35-137 (303)
224 cd01562 Thr-dehyd Threonine de 60.8 1.5E+02 0.0033 30.1 12.8 117 297-440 78-200 (304)
225 cd00954 NAL N-Acetylneuraminic 60.7 99 0.0021 31.6 11.4 93 214-312 28-133 (288)
226 cd08556 GDPD Glycerophosphodie 60.4 75 0.0016 29.4 9.7 39 295-346 148-187 (189)
227 TIGR01306 GMP_reduct_2 guanosi 60.0 17 0.00038 38.1 5.7 49 31-79 84-134 (321)
228 PF00834 Ribul_P_3_epim: Ribul 59.8 47 0.001 32.4 8.4 115 210-347 71-194 (201)
229 PRK12483 threonine dehydratase 59.7 1.7E+02 0.0036 33.0 13.6 152 251-439 52-220 (521)
230 PF01136 Peptidase_U32: Peptid 59.4 19 0.00042 35.2 5.7 42 41-82 157-198 (233)
231 TIGR00736 nifR3_rel_arch TIM-b 59.3 33 0.00072 34.3 7.3 72 214-289 155-230 (231)
232 TIGR00737 nifR3_yhdG putative 59.3 1.6E+02 0.0034 30.6 12.7 125 205-347 73-222 (319)
233 cd08567 GDPD_SpGDE_like Glycer 58.5 76 0.0016 31.5 9.9 42 293-347 217-259 (263)
234 cd04726 KGPDC_HPS 3-Keto-L-gul 58.5 1.2E+02 0.0025 28.9 10.8 116 205-347 11-133 (202)
235 cd02803 OYE_like_FMN_family Ol 58.4 2.3E+02 0.0049 29.2 14.7 131 203-347 130-311 (327)
236 PF00899 ThiF: ThiF family; I 58.4 65 0.0014 28.7 8.5 66 234-312 57-122 (135)
237 PRK14045 1-aminocyclopropane-1 57.9 2.4E+02 0.0052 29.4 16.5 45 396-440 166-219 (329)
238 PLN02970 serine racemase 57.8 1.6E+02 0.0036 30.6 12.6 116 298-440 89-210 (328)
239 PRK04147 N-acetylneuraminate l 57.4 1.4E+02 0.0031 30.5 11.9 100 261-371 24-130 (293)
240 TIGR01136 cysKM cysteine synth 57.1 1.8E+02 0.0038 29.8 12.6 120 298-440 72-198 (299)
241 cd02808 GltS_FMN Glutamate syn 57.1 1.6E+02 0.0036 31.6 12.7 135 190-347 161-314 (392)
242 PRK07028 bifunctional hexulose 56.8 2.5E+02 0.0053 30.5 14.2 130 195-347 4-138 (430)
243 TIGR03217 4OH_2_O_val_ald 4-hy 56.6 2.6E+02 0.0057 29.4 17.2 157 189-370 11-185 (333)
244 cd07937 DRE_TIM_PC_TC_5S Pyruv 56.5 2.3E+02 0.005 28.8 15.2 154 204-370 18-191 (275)
245 cd00959 DeoC 2-deoxyribose-5-p 56.3 58 0.0013 31.5 8.4 103 324-438 66-180 (203)
246 PRK10812 putative DNAse; Provi 56.3 1.3E+02 0.0027 30.6 11.1 102 207-314 20-132 (265)
247 PLN02565 cysteine synthase 56.3 1.5E+02 0.0033 30.9 12.0 121 298-440 81-207 (322)
248 cd04501 SGNH_hydrolase_like_4 56.2 35 0.00076 31.6 6.6 53 261-313 46-103 (183)
249 TIGR01137 cysta_beta cystathio 56.1 1.7E+02 0.0037 31.6 12.9 124 297-440 75-205 (454)
250 KOG2550 IMP dehydrogenase/GMP 56.0 29 0.00063 37.5 6.5 46 34-79 244-289 (503)
251 PRK07998 gatY putative fructos 56.0 2.5E+02 0.0054 29.0 14.9 111 250-367 74-195 (283)
252 cd04727 pdxS PdxS is a subunit 55.5 2.2E+02 0.0048 29.5 12.5 127 216-376 24-167 (283)
253 cd04738 DHOD_2_like Dihydrooro 54.9 1.6E+02 0.0035 30.8 12.0 116 220-349 160-311 (327)
254 cd04723 HisA_HisF Phosphoribos 54.8 1.3E+02 0.0028 29.9 10.7 129 208-360 89-231 (233)
255 PRK08638 threonine dehydratase 54.7 1.9E+02 0.004 30.4 12.4 116 297-439 88-209 (333)
256 TIGR02708 L_lactate_ox L-lacta 54.6 72 0.0016 34.2 9.3 90 230-349 215-314 (367)
257 PF00582 Usp: Universal stress 54.5 36 0.00077 28.8 6.0 42 396-438 89-139 (140)
258 COG0036 Rpe Pentose-5-phosphat 54.4 1.7E+02 0.0037 29.2 11.2 63 210-278 75-137 (220)
259 PF00701 DHDPS: Dihydrodipicol 54.4 1.2E+02 0.0025 30.9 10.6 98 265-372 27-128 (289)
260 PLN02495 oxidoreductase, actin 54.2 2.1E+02 0.0045 31.0 12.8 49 292-350 166-217 (385)
261 PRK07114 keto-hydroxyglutarate 54.1 2.4E+02 0.0051 28.1 12.7 105 224-347 18-139 (222)
262 KOG2178 Predicted sugar kinase 53.9 19 0.00041 38.7 4.7 33 408-440 284-320 (409)
263 PLN03013 cysteine synthase 53.9 1.4E+02 0.0031 32.7 11.6 121 298-440 189-315 (429)
264 PRK12331 oxaloacetate decarbox 53.7 2.1E+02 0.0045 31.6 13.0 179 203-412 22-225 (448)
265 cd03316 MR_like Mandelate race 53.7 67 0.0014 33.6 9.0 64 28-94 125-197 (357)
266 TIGR03249 KdgD 5-dehydro-4-deo 53.4 1.4E+02 0.0029 30.7 11.0 96 209-312 28-135 (296)
267 PRK05567 inosine 5'-monophosph 53.4 37 0.00081 37.6 7.3 51 28-78 215-265 (486)
268 PRK12677 xylose isomerase; Pro 53.4 3.1E+02 0.0067 29.5 14.0 150 209-362 33-231 (384)
269 cd00950 DHDPS Dihydrodipicolin 53.1 1.5E+02 0.0032 30.0 11.1 96 214-314 28-134 (284)
270 PRK07315 fructose-bisphosphate 52.8 2E+02 0.0044 29.7 12.1 102 250-357 77-183 (293)
271 PF04028 DUF374: Domain of unk 52.3 1.1E+02 0.0023 25.2 8.0 54 38-96 17-72 (74)
272 PRK08385 nicotinate-nucleotide 52.2 49 0.0011 34.1 7.3 66 209-280 192-260 (278)
273 PRK10558 alpha-dehydro-beta-de 52.2 1.1E+02 0.0023 31.1 9.8 87 238-347 10-98 (256)
274 COG1646 Predicted phosphate-bi 51.8 30 0.00064 34.7 5.5 173 253-463 18-211 (240)
275 PRK09224 threonine dehydratase 51.4 2.4E+02 0.0053 31.4 13.3 118 296-440 80-204 (504)
276 PRK12290 thiE thiamine-phospha 51.2 1.4E+02 0.003 32.8 10.9 134 207-369 267-414 (437)
277 cd00950 DHDPS Dihydrodipicolin 51.2 1.7E+02 0.0037 29.6 11.3 95 266-371 27-126 (284)
278 PF05690 ThiG: Thiazole biosyn 51.2 62 0.0014 32.6 7.6 81 274-370 146-227 (247)
279 cd00952 CHBPH_aldolase Trans-o 50.9 2.3E+02 0.0049 29.4 12.2 95 267-371 36-134 (309)
280 PRK06815 hypothetical protein; 50.9 2.2E+02 0.0048 29.4 12.2 116 298-440 82-203 (317)
281 KOG3111 D-ribulose-5-phosphate 50.8 2.6E+02 0.0056 27.6 13.9 139 209-370 77-220 (224)
282 cd00331 IGPS Indole-3-glycerol 50.7 2.4E+02 0.0052 27.2 13.4 109 208-349 32-150 (217)
283 cd07947 DRE_TIM_Re_CS Clostrid 50.2 3E+02 0.0065 28.2 16.2 159 188-368 8-197 (279)
284 PRK04180 pyridoxal biosynthesi 50.2 2.7E+02 0.0059 29.0 12.2 118 225-376 56-176 (293)
285 TIGR00259 thylakoid_BtpA membr 50.0 1.7E+02 0.0036 29.9 10.7 113 209-347 92-227 (257)
286 COG0821 gcpE 1-hydroxy-2-methy 49.8 3E+02 0.0065 29.3 12.5 137 217-369 46-192 (361)
287 PRK15005 universal stress prot 49.7 38 0.00082 29.9 5.5 40 398-438 96-143 (144)
288 TIGR02814 pfaD_fam PfaD family 49.4 2.2E+02 0.0047 31.4 12.1 123 210-347 91-253 (444)
289 PRK04452 acetyl-CoA decarbonyl 49.0 2.3E+02 0.005 29.9 11.8 88 274-369 204-311 (319)
290 PF01081 Aldolase: KDPG and KH 48.9 1.2E+02 0.0026 29.6 9.2 105 225-348 12-129 (196)
291 TIGR01303 IMP_DH_rel_1 IMP deh 48.9 25 0.00054 39.0 4.9 51 29-79 213-263 (475)
292 TIGR01949 AroFGH_arch predicte 48.8 57 0.0012 32.8 7.2 67 215-286 164-234 (258)
293 PRK08227 autoinducer 2 aldolas 48.4 49 0.0011 33.8 6.6 138 216-369 103-248 (264)
294 TIGR00742 yjbN tRNA dihydrouri 48.3 39 0.00084 35.4 6.1 63 215-284 149-228 (318)
295 KOG3974 Predicted sugar kinase 48.2 83 0.0018 32.3 8.0 85 216-312 53-137 (306)
296 TIGR01275 ACC_deam_rel pyridox 48.2 2.1E+02 0.0045 29.4 11.4 121 298-439 72-203 (311)
297 PRK03170 dihydrodipicolinate s 47.9 1.7E+02 0.0037 29.8 10.7 93 214-312 29-132 (292)
298 cd00951 KDGDH 5-dehydro-4-deox 47.8 1.9E+02 0.0041 29.6 11.0 91 214-312 28-130 (289)
299 COG0800 Eda 2-keto-3-deoxy-6-p 47.7 2.1E+02 0.0045 28.4 10.5 105 223-346 15-132 (211)
300 PF04055 Radical_SAM: Radical 47.7 1.3E+02 0.0028 26.4 8.8 57 29-86 76-142 (166)
301 PRK04147 N-acetylneuraminate l 47.6 2.1E+02 0.0046 29.2 11.4 93 214-312 31-135 (293)
302 PRK06806 fructose-bisphosphate 47.5 54 0.0012 33.8 6.8 55 31-86 76-130 (281)
303 TIGR00676 fadh2 5,10-methylene 47.5 1.9E+02 0.0041 29.4 10.8 202 263-498 18-240 (272)
304 PLN02417 dihydrodipicolinate s 47.5 1.9E+02 0.0041 29.5 10.9 91 214-312 29-130 (280)
305 cd00408 DHDPS-like Dihydrodipi 47.3 2.1E+02 0.0045 28.8 11.1 96 210-312 22-128 (281)
306 PRK09140 2-dehydro-3-deoxy-6-p 47.2 2E+02 0.0043 28.1 10.5 109 205-346 20-130 (206)
307 TIGR03239 GarL 2-dehydro-3-deo 47.1 1.4E+02 0.003 30.1 9.6 87 238-347 3-91 (249)
308 TIGR00126 deoC deoxyribose-pho 46.3 1E+02 0.0022 30.3 8.4 103 324-438 67-181 (211)
309 PLN02826 dihydroorotate dehydr 46.2 4.3E+02 0.0093 28.8 15.8 148 207-373 204-391 (409)
310 COG0084 TatD Mg-dependent DNas 46.1 1.4E+02 0.0031 30.3 9.5 124 207-347 17-156 (256)
311 TIGR00693 thiE thiamine-phosph 45.8 2.5E+02 0.0054 26.5 10.9 118 215-361 68-194 (196)
312 TIGR02313 HpaI-NOT-DapA 2,4-di 45.7 3E+02 0.0065 28.3 12.1 94 267-370 28-125 (294)
313 PRK00311 panB 3-methyl-2-oxobu 45.7 2.9E+02 0.0062 28.3 11.7 128 204-347 20-181 (264)
314 cd03332 LMO_FMN L-Lactate 2-mo 45.3 1E+02 0.0023 33.2 8.8 90 230-347 240-337 (383)
315 TIGR01127 ilvA_1Cterm threonin 45.3 3.4E+02 0.0074 28.7 12.9 118 297-440 61-183 (380)
316 PRK14024 phosphoribosyl isomer 45.2 3.2E+02 0.007 27.1 12.9 134 207-360 85-235 (241)
317 TIGR00542 hxl6Piso_put hexulos 45.2 3.3E+02 0.0072 27.2 13.8 96 215-312 24-151 (279)
318 PRK03170 dihydrodipicolinate s 45.1 2.3E+02 0.0051 28.8 11.2 88 273-371 36-127 (292)
319 PRK07107 inosine 5-monophospha 44.8 34 0.00073 38.2 5.2 53 26-79 228-280 (502)
320 PF07679 I-set: Immunoglobulin 44.8 56 0.0012 26.2 5.4 69 106-183 8-79 (90)
321 PRK07709 fructose-bisphosphate 44.8 3.8E+02 0.0081 27.8 13.2 130 235-370 64-202 (285)
322 PRK05581 ribulose-phosphate 3- 44.7 2.9E+02 0.0063 26.5 12.3 127 210-366 20-160 (220)
323 cd07943 DRE_TIM_HOA 4-hydroxy- 44.6 3.4E+02 0.0074 27.2 18.0 150 204-370 19-183 (263)
324 cd04724 Tryptophan_synthase_al 44.5 2.3E+02 0.0049 28.3 10.7 113 215-347 99-215 (242)
325 PRK05638 threonine synthase; V 44.4 2.2E+02 0.0047 31.1 11.4 107 297-429 125-231 (442)
326 TIGR01163 rpe ribulose-phospha 44.3 2.8E+02 0.0061 26.2 13.4 133 209-368 14-157 (210)
327 PRK08185 hypothetical protein; 44.3 3.8E+02 0.0082 27.7 14.4 105 249-357 67-179 (283)
328 cd04741 DHOD_1A_like Dihydroor 44.2 3.7E+02 0.0081 27.6 13.6 133 220-372 119-292 (294)
329 TIGR01949 AroFGH_arch predicte 43.9 88 0.0019 31.4 7.7 62 28-89 69-141 (258)
330 cd00952 CHBPH_aldolase Trans-o 43.8 2.6E+02 0.0057 28.9 11.4 93 214-312 36-140 (309)
331 PRK15447 putative protease; Pr 43.7 1.4E+02 0.0031 30.8 9.4 66 273-347 29-95 (301)
332 TIGR00735 hisF imidazoleglycer 43.7 3.1E+02 0.0067 27.4 11.6 83 401-501 160-251 (254)
333 cd02809 alpha_hydroxyacid_oxid 43.6 2.7E+02 0.0059 28.6 11.4 106 215-348 137-257 (299)
334 cd08564 GDPD_GsGDE_like Glycer 43.6 2.8E+02 0.0061 27.7 11.3 54 294-363 210-264 (265)
335 TIGR02356 adenyl_thiF thiazole 43.5 1.1E+02 0.0024 29.6 8.0 65 235-312 77-141 (202)
336 PF01729 QRPTase_C: Quinolinat 43.5 38 0.00083 32.2 4.7 57 216-279 96-155 (169)
337 PRK06382 threonine dehydratase 43.3 4.5E+02 0.0097 28.3 13.5 115 299-440 88-208 (406)
338 cd01485 E1-1_like Ubiquitin ac 43.0 1.2E+02 0.0027 29.2 8.3 66 235-312 77-143 (198)
339 PF02662 FlpD: Methyl-viologen 42.9 64 0.0014 29.0 5.8 31 320-350 32-62 (124)
340 TIGR00739 yajC preprotein tran 42.9 70 0.0015 26.8 5.7 41 136-185 32-72 (84)
341 PRK02083 imidazole glycerol ph 42.9 3.1E+02 0.0066 27.3 11.4 36 303-350 70-106 (253)
342 PF00701 DHDPS: Dihydrodipicol 42.8 2.9E+02 0.0062 28.0 11.4 99 210-314 25-135 (289)
343 COG0352 ThiE Thiamine monophos 42.5 3.3E+02 0.0072 26.9 11.2 128 211-369 73-208 (211)
344 cd04740 DHOD_1B_like Dihydroor 42.2 3.9E+02 0.0083 27.2 13.4 88 250-349 89-188 (296)
345 PRK11750 gltB glutamate syntha 42.2 1.7E+02 0.0037 36.9 10.9 150 173-347 929-1096(1485)
346 PRK11761 cysM cysteine synthas 42.1 4E+02 0.0087 27.3 12.5 118 298-439 77-201 (296)
347 PRK10425 DNase TatD; Provision 42.1 3.3E+02 0.0072 27.5 11.5 103 208-314 16-129 (258)
348 COG2022 ThiG Uncharacterized e 42.0 90 0.002 31.5 7.0 51 306-368 181-232 (262)
349 PRK02615 thiamine-phosphate py 42.0 3.1E+02 0.0067 29.2 11.7 138 207-370 207-345 (347)
350 cd01492 Aos1_SUMO Ubiquitin ac 41.9 1.5E+02 0.0032 28.6 8.7 64 235-312 77-140 (197)
351 COG0159 TrpA Tryptophan syntha 41.8 2E+02 0.0043 29.5 9.7 112 215-347 117-233 (265)
352 PRK08526 threonine dehydratase 41.8 4.5E+02 0.0097 28.4 13.1 118 297-440 81-203 (403)
353 PF01079 Hint: Hint module; I 41.6 87 0.0019 31.0 7.0 75 108-185 69-148 (217)
354 PLN03228 methylthioalkylmalate 41.4 5.6E+02 0.012 28.8 18.8 166 189-369 93-280 (503)
355 PRK00073 pgk phosphoglycerate 41.2 94 0.002 33.6 7.7 308 29-435 32-362 (389)
356 COG2225 AceB Malate synthase [ 41.1 49 0.0011 37.0 5.6 98 222-319 220-345 (545)
357 cd02922 FCB2_FMN Flavocytochro 40.9 2.3E+02 0.005 30.0 10.5 94 229-347 199-300 (344)
358 cd02812 PcrB_like PcrB_like pr 40.8 58 0.0012 32.4 5.6 171 264-473 15-204 (219)
359 PRK06801 hypothetical protein; 40.8 4.3E+02 0.0093 27.3 13.6 105 249-357 73-186 (286)
360 PF01180 DHO_dh: Dihydroorotat 40.8 2.6E+02 0.0056 28.5 10.7 145 206-372 111-293 (295)
361 cd05565 PTS_IIB_lactose PTS_II 40.8 1.3E+02 0.0028 26.1 7.1 68 228-312 10-77 (99)
362 PRK09454 ugpQ cytoplasmic glyc 40.6 2.6E+02 0.0056 27.8 10.4 93 222-347 144-237 (249)
363 cd08579 GDPD_memb_like Glycero 40.5 1.9E+02 0.0042 27.9 9.3 41 293-346 176-217 (220)
364 TIGR00683 nanA N-acetylneurami 40.2 4.2E+02 0.0092 27.1 12.2 93 214-312 28-133 (290)
365 TIGR00683 nanA N-acetylneurami 40.2 3.3E+02 0.0072 27.9 11.4 94 266-370 27-126 (290)
366 cd01822 Lysophospholipase_L1_l 40.1 95 0.0021 28.2 6.8 52 261-312 51-106 (177)
367 PRK07315 fructose-bisphosphate 40.0 75 0.0016 32.9 6.6 55 31-87 79-133 (293)
368 PF09370 TIM-br_sig_trns: TIM- 39.9 82 0.0018 32.3 6.6 61 34-96 152-223 (268)
369 cd02932 OYE_YqiM_FMN Old yello 39.8 4.6E+02 0.0099 27.3 13.0 25 203-227 143-174 (336)
370 PF03644 Glyco_hydro_85: Glyco 39.6 33 0.00072 35.8 3.9 72 299-372 47-133 (311)
371 cd04732 HisA HisA. Phosphorib 39.6 3.5E+02 0.0077 26.2 11.1 140 215-369 37-188 (234)
372 TIGR01768 GGGP-family geranylg 39.4 64 0.0014 32.2 5.7 176 261-473 15-208 (223)
373 COG0826 Collagenase and relate 39.4 1.6E+02 0.0034 31.4 9.0 78 263-347 16-99 (347)
374 PLN02979 glycolate oxidase 39.4 1.6E+02 0.0034 31.6 8.9 91 230-347 210-307 (366)
375 cd03320 OSBS o-Succinylbenzoat 39.3 1.1E+02 0.0025 30.6 7.7 64 28-94 71-135 (263)
376 PRK07428 nicotinate-nucleotide 39.2 1.1E+02 0.0023 31.8 7.5 65 208-280 205-272 (288)
377 COG1892 Phosphoenolpyruvate ca 39.1 69 0.0015 35.0 6.2 94 218-311 122-246 (488)
378 PRK02714 O-succinylbenzoate sy 38.9 87 0.0019 32.6 7.0 63 29-94 109-171 (320)
379 cd04733 OYE_like_2_FMN Old yel 38.8 4.8E+02 0.01 27.2 12.9 128 203-347 138-322 (338)
380 TIGR00693 thiE thiamine-phosph 38.7 1E+02 0.0022 29.2 6.9 45 43-87 16-60 (196)
381 PRK10886 DnaA initiator-associ 38.7 3.3E+02 0.0072 26.4 10.5 104 395-514 25-145 (196)
382 PRK08639 threonine dehydratase 38.6 3.7E+02 0.008 29.1 12.0 119 297-440 86-214 (420)
383 PLN00011 cysteine synthase 38.6 4.7E+02 0.01 27.1 13.4 121 298-440 83-209 (323)
384 COG0646 MetH Methionine syntha 38.5 1.1E+02 0.0024 32.0 7.3 63 28-91 113-193 (311)
385 PRK10128 2-keto-3-deoxy-L-rham 38.2 2.4E+02 0.0053 28.8 9.9 86 238-347 9-97 (267)
386 cd00564 TMP_TenI Thiamine mono 38.2 1.1E+02 0.0023 28.4 6.9 43 43-85 15-57 (196)
387 cd02933 OYE_like_FMN Old yello 38.2 4.5E+02 0.0097 27.7 12.2 125 202-347 140-314 (338)
388 TIGR03528 2_3_DAP_am_ly diamin 38.1 5E+02 0.011 28.0 12.8 118 298-438 127-260 (396)
389 PRK08198 threonine dehydratase 37.9 5.3E+02 0.012 27.5 13.4 153 251-440 37-205 (404)
390 PRK07476 eutB threonine dehydr 37.9 4.8E+02 0.01 27.0 12.4 118 297-440 80-202 (322)
391 PRK05742 nicotinate-nucleotide 37.8 94 0.002 32.0 6.8 73 194-280 187-262 (277)
392 PRK00043 thiE thiamine-phospha 37.8 1E+02 0.0023 29.3 6.9 43 43-85 24-66 (212)
393 TIGR02991 ectoine_eutB ectoine 37.8 4.4E+02 0.0096 27.3 12.0 117 297-439 80-201 (317)
394 PRK00125 pyrF orotidine 5'-pho 37.7 2.8E+02 0.0061 28.6 10.3 124 295-436 74-216 (278)
395 PRK04885 ppnK inorganic polyph 37.6 39 0.00086 34.4 4.0 33 408-440 146-182 (265)
396 TIGR01036 pyrD_sub2 dihydrooro 37.4 3.8E+02 0.0082 28.2 11.5 117 220-348 166-318 (335)
397 PRK11858 aksA trans-homoaconit 36.9 5.4E+02 0.012 27.5 12.8 138 209-364 78-240 (378)
398 COG0329 DapA Dihydrodipicolina 36.9 4.9E+02 0.011 26.9 12.1 97 210-312 28-135 (299)
399 TIGR02311 HpaI 2,4-dihydroxyhe 36.8 1.9E+02 0.0041 29.1 8.8 86 238-347 3-91 (249)
400 cd06557 KPHMT-like Ketopantoat 36.7 4.7E+02 0.01 26.6 11.9 127 204-346 17-177 (254)
401 cd02911 arch_FMN Archeal FMN-b 36.7 2.7E+02 0.0058 27.7 9.8 93 230-348 123-221 (233)
402 COG2870 RfaE ADP-heptose synth 36.6 1.5E+02 0.0034 32.2 8.2 89 217-312 61-176 (467)
403 PLN02417 dihydrodipicolinate s 36.5 4.5E+02 0.0097 26.7 11.6 91 273-374 36-129 (280)
404 TIGR00343 pyridoxal 5'-phospha 36.4 5.1E+02 0.011 26.9 12.5 113 227-373 51-166 (287)
405 PRK08206 diaminopropionate amm 36.4 3.9E+02 0.0085 28.8 11.6 121 298-438 130-262 (399)
406 PRK00865 glutamate racemase; P 36.2 63 0.0014 32.6 5.3 118 215-357 62-190 (261)
407 PRK07896 nicotinate-nucleotide 36.1 1E+02 0.0022 31.9 6.8 64 209-280 209-275 (289)
408 TIGR00853 pts-lac PTS system, 35.9 1.8E+02 0.0039 24.8 7.2 65 231-312 16-80 (95)
409 TIGR01093 aroD 3-dehydroquinat 35.9 1.2E+02 0.0027 29.8 7.2 73 28-100 117-196 (228)
410 PRK08185 hypothetical protein; 35.8 1.1E+02 0.0024 31.6 6.9 57 30-87 69-125 (283)
411 TIGR00222 panB 3-methyl-2-oxob 35.7 5E+02 0.011 26.6 11.7 127 204-347 20-180 (263)
412 COG0061 nadF NAD kinase [Coenz 35.7 37 0.00081 34.8 3.5 34 407-440 163-200 (281)
413 PRK03910 D-cysteine desulfhydr 35.7 2.9E+02 0.0063 28.7 10.3 39 401-439 170-217 (331)
414 KOG4175 Tryptophan synthase al 35.7 2.5E+02 0.0055 27.8 8.8 141 201-373 105-248 (268)
415 cd02940 DHPD_FMN Dihydropyrimi 35.6 3.5E+02 0.0076 27.8 10.8 86 251-348 100-201 (299)
416 PRK15452 putative protease; Pr 35.6 64 0.0014 35.5 5.5 41 42-82 270-310 (443)
417 cd02811 IDI-2_FMN Isopentenyl- 35.6 5.4E+02 0.012 26.9 14.5 53 307-372 255-311 (326)
418 TIGR01108 oadA oxaloacetate de 35.5 7.2E+02 0.016 28.4 17.8 186 203-420 17-227 (582)
419 PF01026 TatD_DNase: TatD rela 35.5 1.7E+02 0.0037 29.1 8.3 97 210-314 18-132 (255)
420 PF01113 DapB_N: Dihydrodipico 35.4 1.3E+02 0.0029 26.6 6.7 40 264-314 59-99 (124)
421 PRK08197 threonine synthase; V 35.2 2.9E+02 0.0064 29.5 10.5 45 395-440 112-158 (394)
422 TIGR02355 moeB molybdopterin s 35.2 1.8E+02 0.0039 29.1 8.2 65 235-312 80-144 (240)
423 cd00019 AP2Ec AP endonuclease 35.1 1.6E+02 0.0035 29.5 8.0 32 214-245 17-57 (279)
424 TIGR00381 cdhD CO dehydrogenas 35.1 5.5E+02 0.012 27.9 12.1 125 218-371 151-299 (389)
425 PLN02550 threonine dehydratase 34.9 5.6E+02 0.012 29.4 12.9 153 251-440 124-293 (591)
426 PRK05848 nicotinate-nucleotide 34.9 1.3E+02 0.0028 31.0 7.2 64 209-280 192-258 (273)
427 TIGR02320 PEP_mutase phosphoen 34.8 2.6E+02 0.0056 28.9 9.5 63 215-279 100-189 (285)
428 PRK07535 methyltetrahydrofolat 34.7 74 0.0016 32.3 5.5 55 43-99 28-82 (261)
429 cd08563 GDPD_TtGDE_like Glycer 34.5 2.2E+02 0.0047 27.7 8.7 39 295-346 188-227 (230)
430 PRK15456 universal stress prot 34.4 82 0.0018 27.9 5.2 39 399-438 95-141 (142)
431 PRK07807 inosine 5-monophospha 34.4 33 0.00072 38.0 3.1 50 30-79 216-265 (479)
432 cd00423 Pterin_binding Pterin 34.1 1.2E+02 0.0027 30.4 7.0 53 44-98 28-88 (258)
433 cd02801 DUS_like_FMN Dihydrour 33.9 4.4E+02 0.0095 25.4 13.5 123 206-347 66-213 (231)
434 PLN02556 cysteine synthase/L-3 33.9 4.6E+02 0.01 27.9 11.6 121 298-440 125-251 (368)
435 PRK15116 sulfur acceptor prote 33.9 80 0.0017 32.3 5.6 87 234-337 85-173 (268)
436 TIGR02079 THD1 threonine dehyd 33.9 5.9E+02 0.013 27.5 12.6 119 297-440 77-203 (409)
437 smart00729 Elp3 Elongator prot 33.8 2.8E+02 0.006 25.4 9.0 44 37-80 94-146 (216)
438 cd06556 ICL_KPHMT Members of t 33.7 2.3E+02 0.005 28.5 8.7 36 403-439 163-198 (240)
439 PF07521 RMMBL: RNA-metabolisi 33.7 32 0.0007 24.9 1.9 24 54-77 7-31 (43)
440 TIGR00343 pyridoxal 5'-phospha 33.6 5.7E+02 0.012 26.6 12.4 37 332-368 213-249 (287)
441 PRK06512 thiamine-phosphate py 33.3 3E+02 0.0066 27.1 9.4 43 43-85 29-72 (221)
442 PRK07259 dihydroorotate dehydr 33.2 5.2E+02 0.011 26.4 11.6 85 250-348 91-190 (301)
443 PF01791 DeoC: DeoC/LacD famil 33.2 77 0.0017 31.3 5.2 94 322-420 66-168 (236)
444 PF01487 DHquinase_I: Type I 3 33.0 1.8E+02 0.004 28.3 7.9 74 27-100 111-191 (224)
445 PRK08417 dihydroorotase; Provi 33.0 6.2E+02 0.013 26.9 14.2 103 202-314 42-151 (386)
446 PRK15108 biotin synthase; Prov 33.0 1.1E+02 0.0024 32.4 6.6 30 30-61 125-154 (345)
447 PF02581 TMP-TENI: Thiamine mo 32.9 1.4E+02 0.003 28.2 6.7 44 42-85 14-57 (180)
448 cd01987 USP_OKCHK USP domain i 32.8 1E+02 0.0022 26.4 5.4 43 396-438 72-123 (124)
449 TIGR00010 hydrolase, TatD fami 32.8 4.3E+02 0.0092 25.5 10.5 100 209-314 17-129 (252)
450 cd00757 ThiF_MoeB_HesA_family 32.8 2E+02 0.0043 28.2 8.1 65 235-312 77-141 (228)
451 PRK10528 multifunctional acyl- 32.7 1.5E+02 0.0033 28.0 7.0 52 261-312 58-113 (191)
452 PRK15118 universal stress glob 32.6 1.1E+02 0.0024 27.0 5.8 40 398-438 92-137 (144)
453 cd02809 alpha_hydroxyacid_oxid 32.4 91 0.002 32.1 5.8 60 215-283 188-260 (299)
454 cd01573 modD_like ModD; Quinol 32.4 1.5E+02 0.0034 30.2 7.4 63 209-279 193-258 (272)
455 PRK07591 threonine synthase; V 32.4 6.8E+02 0.015 27.1 13.1 119 296-439 149-281 (421)
456 PRK14024 phosphoribosyl isomer 32.3 71 0.0015 31.8 4.9 73 215-295 154-238 (241)
457 PLN03034 phosphoglycerate kina 32.3 1.5E+02 0.0031 33.1 7.5 152 255-429 276-442 (481)
458 PRK08328 hypothetical protein; 32.3 1.7E+02 0.0037 28.9 7.6 71 238-321 87-159 (231)
459 cd01487 E1_ThiF_like E1_ThiF_l 32.2 2.1E+02 0.0046 27.0 7.8 65 235-312 54-119 (174)
460 PF00677 Lum_binding: Lumazine 32.2 1.7E+02 0.0036 24.4 6.3 43 128-180 19-62 (85)
461 cd00405 PRAI Phosphoribosylant 31.9 4.6E+02 0.01 25.0 12.4 119 208-353 61-189 (203)
462 cd00953 KDG_aldolase KDG (2-ke 31.6 5.6E+02 0.012 26.0 11.8 90 214-312 27-126 (279)
463 PF00150 Cellulase: Cellulase 31.6 74 0.0016 31.3 4.9 54 41-96 22-85 (281)
464 PRK09140 2-dehydro-3-deoxy-6-p 31.5 5E+02 0.011 25.3 11.8 100 215-350 78-182 (206)
465 PRK07695 transcriptional regul 31.4 1.3E+02 0.0029 28.7 6.5 35 44-78 18-52 (201)
466 PF01261 AP_endonuc_2: Xylose 31.3 1.1E+02 0.0024 28.4 5.8 94 215-312 3-130 (213)
467 PRK10415 tRNA-dihydrouridine s 31.3 6.2E+02 0.013 26.3 13.5 139 201-355 17-177 (321)
468 PRK04180 pyridoxal biosynthesi 31.2 4.5E+02 0.0097 27.4 10.4 129 216-367 92-254 (293)
469 cd06568 GH20_SpHex_like A subg 31.1 6.4E+02 0.014 26.4 12.9 139 203-348 71-235 (329)
470 TIGR03249 KdgD 5-dehydro-4-deo 31.0 5.4E+02 0.012 26.3 11.2 89 273-371 40-130 (296)
471 PRK05690 molybdopterin biosynt 31.0 2.2E+02 0.0047 28.5 8.1 65 235-312 88-152 (245)
472 PLN02535 glycolate oxidase 30.9 84 0.0018 33.6 5.3 61 215-284 239-312 (364)
473 PRK04169 geranylgeranylglycery 30.7 1.7E+02 0.0037 29.4 7.1 57 266-346 25-82 (232)
474 TIGR01859 fruc_bis_ald_ fructo 30.6 2E+02 0.0044 29.6 7.9 55 30-85 75-129 (282)
475 cd08562 GDPD_EcUgpQ_like Glyce 30.5 3.1E+02 0.0067 26.4 9.0 39 295-346 187-226 (229)
476 TIGR01124 ilvA_2Cterm threonin 30.4 8E+02 0.017 27.4 13.2 152 251-440 32-201 (499)
477 cd04736 MDH_FMN Mandelate dehy 30.4 3.7E+02 0.0081 28.8 10.1 33 305-349 287-320 (361)
478 PRK09532 DNA polymerase III su 30.3 6.1E+02 0.013 30.5 12.8 123 214-341 26-228 (874)
479 cd06563 GH20_chitobiase-like T 30.2 4.9E+02 0.011 27.5 11.1 140 203-349 82-263 (357)
480 cd00755 YgdL_like Family of ac 30.2 1.4E+02 0.003 29.8 6.5 85 235-336 67-153 (231)
481 PRK13398 3-deoxy-7-phosphohept 30.2 6.1E+02 0.013 25.9 12.5 62 274-346 164-230 (266)
482 PRK02901 O-succinylbenzoate sy 30.0 2.9E+02 0.0063 29.0 9.2 62 28-94 77-142 (327)
483 COG2515 Acd 1-aminocyclopropan 30.0 4.2E+02 0.0091 27.9 9.9 33 408-440 179-215 (323)
484 PRK14077 pnk inorganic polypho 30.0 63 0.0014 33.4 4.1 33 408-440 175-211 (287)
485 TIGR02127 pyrF_sub2 orotidine 30.0 3.1E+02 0.0067 27.9 9.1 128 291-436 70-214 (261)
486 cd03174 DRE_TIM_metallolyase D 29.8 5.4E+02 0.012 25.2 10.8 135 209-362 77-240 (265)
487 TIGR00196 yjeF_cterm yjeF C-te 29.8 75 0.0016 32.0 4.6 83 209-312 42-124 (272)
488 PF04551 GcpE: GcpE protein; 29.6 89 0.0019 33.3 5.1 50 42-94 33-82 (359)
489 PRK00561 ppnK inorganic polyph 29.6 64 0.0014 32.9 4.0 33 408-440 135-171 (259)
490 PLN02535 glycolate oxidase 29.4 5.2E+02 0.011 27.7 10.9 95 230-350 210-310 (364)
491 PTZ00005 phosphoglycerate kina 29.1 3.5E+02 0.0076 29.6 9.7 156 255-432 215-386 (417)
492 cd05845 Ig2_L1-CAM_like Second 29.1 2.6E+02 0.0057 23.9 7.1 70 106-183 11-82 (95)
493 PRK01911 ppnK inorganic polyph 29.1 58 0.0013 33.7 3.7 33 408-440 174-210 (292)
494 PRK02048 4-hydroxy-3-methylbut 29.1 72 0.0016 36.3 4.6 50 42-94 43-92 (611)
495 PRK09427 bifunctional indole-3 29.1 1.1E+02 0.0024 33.7 6.0 16 331-346 268-283 (454)
496 cd06570 GH20_chitobiase-like_1 29.0 5.8E+02 0.013 26.6 11.1 138 203-347 64-243 (311)
497 cd01568 QPRTase_NadC Quinolina 28.9 1.2E+02 0.0027 30.8 6.0 62 209-279 191-255 (269)
498 COG0069 GltB Glutamate synthas 28.9 2.8E+02 0.0062 30.9 9.0 149 173-347 236-403 (485)
499 PRK06110 hypothetical protein; 28.9 6.7E+02 0.014 25.9 12.5 115 298-440 84-204 (322)
500 PRK08195 4-hyroxy-2-oxovalerat 28.7 1.6E+02 0.0035 31.1 7.0 50 28-77 76-125 (337)
No 1
>PLN02765 pyruvate kinase
Probab=100.00 E-value=1.3e-136 Score=1098.67 Aligned_cols=517 Identities=87% Similarity=1.253 Sum_probs=475.5
Q ss_pred CCCccceeecccccccccccCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHH
Q 036921 1 MHSSHLLLEEPIRMASILEPSKASFFPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAV 80 (527)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~ 80 (527)
|||+|+++..++.+.++|.+.+.....+||||||||||+|+++|+|++|+++||||||||||||++|+|++.++++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~vR~~~ 80 (526)
T PLN02765 1 MQSSHLLLEEPIRLASILEPSKPSFFPALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQETLENLKIAV 80 (526)
T ss_pred CCCcceEEecccchhhhcccccccccCCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999998776544456999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEecCCCCeEEeeeCCCCcEEeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCC---
Q 036921 81 KTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTG--- 157 (527)
Q Consensus 81 ~~~~~~v~i~~Dl~GpkiR~~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG--- 157 (527)
++++++++||+|||||||||+..+++++.|++|++++|+.+....++.+.|+++|++|++.+++||+||+| ||
T Consensus 81 ~~~~~~vaIl~Dl~GPkIR~g~~~~~~i~l~~G~~~~l~~~~~~~g~~~~i~v~~~~l~~~v~~Gd~Ilid----DG~~~ 156 (526)
T PLN02765 81 KNTKKLCAVMLDTVGPELQVINKTEKPISLKAGNTVTLTPDQSKEASSEVLPINFPGLAKAVKPGDTIFVG----QYLFT 156 (526)
T ss_pred HHhCCCeEEEecCCCCceeeeecCCCcEecCCCCEEEEecccccCCCCCEEeechHHHHhhcCCCCEEEEC----Ccccc
Confidence 99999999999999999999877667899999999999987544678889999999999999999999999 87
Q ss_pred -----ceEEEEEEEEEEeeCCeEEEEEEeCcEecCC-CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCC
Q 036921 158 -----SETTSVWLEVSEVKGNDVTCVIKNTATLAGS-LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRH 231 (527)
Q Consensus 158 -----~i~l~V~l~~~~~~~~~v~~~v~~~G~l~~~-~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s 231 (527)
++.|+| .+++++.+.|+|++||.| ++ +||+|+||+.+++|+||++|++||.+|++++++|||++||||+
T Consensus 157 g~~dg~i~l~V----~~~~~~~v~~~v~~gG~L-~s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~ 231 (526)
T PLN02765 157 GSETTSVWLEV----DEVKGDDVVCTVKNSATL-AGSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRH 231 (526)
T ss_pred cccCceEEEEE----EEEECCEEEEEEEeCcEE-CCCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECCCCC
Confidence 799998 455789999999999999 88 5899999999999999999999994499999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 036921 232 AEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAV 311 (527)
Q Consensus 232 ~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi 311 (527)
++||.++|++|.+.|. .+++||||||+++|++||+||++++|||||||||||+|+|+++||.+||+||++|+++|||||
T Consensus 232 a~DI~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI 310 (526)
T PLN02765 232 AEDVREAREFLSSLGL-SQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAV 310 (526)
T ss_pred HHHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeE
Confidence 9999999999998772 389999999999999999999999999999999999999999999999999999999999998
Q ss_pred EecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCC
Q 036921 312 VTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPM 391 (527)
Q Consensus 312 ~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~ 391 (527)
+|||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++||++||+.++|...|.........+.
T Consensus 311 ~TQmLeSMi~np~PTRAEvsDVaNAV~DGaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~ 390 (526)
T PLN02765 311 VTRVVDSMTDNLRPTRAEATDVANAVLDGADAILLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFKKTVKYVGEPM 390 (526)
T ss_pred EehhhhHHhhCCCCChhhHHHHHHHHHhCCCEEEecchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhhhhcccccCC
Confidence 89999999999999999999999999999999999999999999999999999999999987666544432211112233
Q ss_pred ChHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEe
Q 036921 392 THLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPML 471 (527)
Q Consensus 392 ~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~tA~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l 471 (527)
+..+++|.+|+++|.+++|++|+|||.||+||+++|||||.|||+|+|+|+.++|+.+|..++++++|||+|+|||+|++
T Consensus 391 ~~~~aia~sav~~A~~l~a~aIvv~T~sG~tAr~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~ 470 (526)
T PLN02765 391 SHLESIASSAVRAAIKVKASVIIVFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPML 470 (526)
T ss_pred CHHHHHHHHHHHHHhhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEE
Confidence 45789999999999999999999999999999999999999999999878888999999999999999999999999998
Q ss_pred cCCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEecCCCceEEEEEeCC
Q 036921 472 ADPRHPAESTNATNESVLKVALDHGKASGVIKSHDRVVVCQKVGDASVVKIIELED 527 (527)
Q Consensus 472 ~~~~~~~~~~~~~~e~~i~~a~~~a~e~g~v~~GD~VVvv~g~g~tn~ikv~~v~~ 527 (527)
.+.....++|....+.++..|++++++.|++++||.||++++.|+||++||.+++|
T Consensus 471 ~~~~~~~e~~~~~~~~~~~~a~~~~~~~g~~~~GD~vvv~~~~g~tn~i~v~~v~~ 526 (526)
T PLN02765 471 ADPRHSAESTSATNESVLKVALDHGKAAGVIKSHDRVVVCQKVGDSSVVKIIELDD 526 (526)
T ss_pred eccccccccccccHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCceEEEEEcCC
Confidence 87654334334457888999999999999999999999999889999999999875
No 2
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=5.6e-135 Score=1086.02 Aligned_cols=505 Identities=44% Similarity=0.732 Sum_probs=467.0
Q ss_pred cccccccccCC-CCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEE
Q 036921 12 IRMASILEPSK-ASFFPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVM 90 (527)
Q Consensus 12 ~~~~~~~~~~~-~~~~~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~ 90 (527)
++|.++|.|.+ +..+.|+|||||||||+|+++|+|++|+++|||+||||||||++++|.++++++|++++++|++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~~i~~vr~~~~~~g~~i~Il 83 (511)
T PLN02461 4 IDIEGILKGLPADGLRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQETLDNLRQAMANTGILCAVM 83 (511)
T ss_pred cchhhhcccccCccccCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 78999999998 66688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEeeeCCC-CcEEeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEE
Q 036921 91 LDTVGPELQVVNKSE-KAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSE 169 (527)
Q Consensus 91 ~Dl~GpkiR~~~~~~-~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~ 169 (527)
+||+|||||++...+ +++.|++|+.++|+.+....++.+.|+++|++|++.+++||+||+| ||+|.|+| ++++
T Consensus 84 ~Dl~GPkIR~g~~~~~~~i~l~~G~~v~lt~~~~~~~~~~~i~v~~~~~~~~v~~Gd~Ilid----DG~i~l~V-~~~~- 157 (511)
T PLN02461 84 LDTKGPEIRTGFLKDGKPVQLKQGQEITITTDYSIKGDENMIAMSYKKLAVDVKPGSVILCA----DGTITLTV-LSCD- 157 (511)
T ss_pred eeCCCCceeccccCCCCceecCCCCEEEEecCCccCCCCCEEEeccHHHHhhcCCCCEEEEe----CCEEEEEE-EEEe-
Confidence 999999999975543 4699999999999988655678889999999999999999999999 99999999 6542
Q ss_pred eeCCeEEEEEEeCcEecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCC
Q 036921 170 VKGNDVTCVIKNTATLAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLS 249 (527)
Q Consensus 170 ~~~~~v~~~v~~~G~l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~ 249 (527)
.+++.++|+|.+||.| +++||+|+||..+++|+||+||++||.+|++++|+|||++||||+++||+++|++|.+.| .
T Consensus 158 ~~~~~i~~~v~~gG~l-~s~Kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~--~ 234 (511)
T PLN02461 158 VEAGTVRCRCENSAML-GERKNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHA--K 234 (511)
T ss_pred cCCCEEEEEEecCcEe-cCCceeeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCC--C
Confidence 2368999999999999 999999999999999999999999983399999999999999999999999999999877 7
Q ss_pred CceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChH
Q 036921 250 QTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRA 328 (527)
Q Consensus 250 ~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~Ptra 328 (527)
+++|||||||++|++||+||++++|||||||||||+|+|+|+||.+||+||+.|+++|||||+ |||||||++||+||||
T Consensus 235 ~~~IiAKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRA 314 (511)
T PLN02461 235 SILLISKVENQEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRA 314 (511)
T ss_pred CCCEEEEECCHHHHHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchH
Confidence 899999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhc
Q 036921 329 EATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKV 408 (527)
Q Consensus 329 Ev~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~ 408 (527)
|++||||||+||+||+|||+|||+|+||+|||++|++||++||+.++|..+|.........+.+..+++|.+|+++|.++
T Consensus 315 EvsDVanAV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l 394 (511)
T PLN02461 315 EATDVANAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRTANKV 394 (511)
T ss_pred HHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCChHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999876655554332111113356799999999999999
Q ss_pred CCcEEEEECCCcHHHHHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecCCCCCCCCCccCHHHH
Q 036921 409 KASVIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTNATNESV 488 (527)
Q Consensus 409 ~a~~Ivv~T~sG~tA~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~~e~~ 488 (527)
+|++|+|||.||+||+++|||||.|||||+|.++..+++++|++++++++|||+|+|||+|++++.....+ |.++.+++
T Consensus 395 ~a~aIiv~T~sG~tA~~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~-~~~~~~~~ 473 (511)
T PLN02461 395 KASLIVVLTRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKAT-DSESTEEI 473 (511)
T ss_pred CCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEeccccccc-ccCCHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999876432112 24678999
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEEEecCCCceEEEEEeC
Q 036921 489 LKVALDHGKASGVIKSHDRVVVCQKVGDASVVKIIELE 526 (527)
Q Consensus 489 i~~a~~~a~e~g~v~~GD~VVvv~g~g~tn~ikv~~v~ 526 (527)
++.|++++++.|++++||.||+++|.|+||++||..++
T Consensus 474 i~~a~~~~~~~g~~~~Gd~vvvv~~~g~tn~i~v~~v~ 511 (511)
T PLN02461 474 LEAAIEHAKKKGLCKPGDSVVALHRIGGASVIKILTVK 511 (511)
T ss_pred HHHHHHHHHHcCCCCCcCEEEEEecCCCCcEEEEEEeC
Confidence 99999999999999999999999999999999999874
No 3
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=2e-132 Score=1065.31 Aligned_cols=485 Identities=37% Similarity=0.634 Sum_probs=446.8
Q ss_pred cccccccccc-CCCCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHc-CCceE
Q 036921 11 PIRMASILEP-SKASFFPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTT-KKLCA 88 (527)
Q Consensus 11 ~~~~~~~~~~-~~~~~~~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~-~~~v~ 88 (527)
++.+.++|.+ .......|||||||||||+|+++|+|++|+++|||+||||||||++|+|+++++++|++++++ +++++
T Consensus 20 ~~~~~~~~~~~~~~~~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~~i~~vR~~~~~~~~~~ia 99 (513)
T PTZ00066 20 NISLDKILEPISDNDLRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKKTLNNVREAAKARPNANLG 99 (513)
T ss_pred ccchhhhccccccCcccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCceE
Confidence 4555666665 333457899999999999999999999999999999999999999999999999999999996 89999
Q ss_pred EEecCCCCeEEeeeCCC-CcEEeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEE
Q 036921 89 VMLDTVGPELQVVNKSE-KAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEV 167 (527)
Q Consensus 89 i~~Dl~GpkiR~~~~~~-~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~ 167 (527)
|++||+|||||++...+ +++.|++|++++|+.+....++++.++++|++|++.+++||+||+| ||+|.|+|
T Consensus 100 Il~Dl~GPkiR~g~~~~~~~i~l~~G~~~~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~Ilid----DG~i~l~V---- 171 (513)
T PTZ00066 100 ILLDTKGPEIRTGFLKNHKPITLKEGQTLKITTDYTFLGDETCISCSYKKLPQSVKVGNIILIA----DGSLSCKV---- 171 (513)
T ss_pred EEeeCCCCceeecccCCCCeEEeCCCCEEEEecCCccCCCCcEEecchHHHHhhccCCCEEEEe----CCEEEEEE----
Confidence 99999999999976654 4799999999999987555678889999999999999999999999 99999999
Q ss_pred EEeeCCeEEEEEEeCcEecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCC
Q 036921 168 SEVKGNDVTCVIKNTATLAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGD 247 (527)
Q Consensus 168 ~~~~~~~v~~~v~~~G~l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~ 247 (527)
.+++++.+.|+|++||.| +++||+|+||..+++|++|++|++||.+|++++|+|||++||||+++||+++|++|++.|
T Consensus 172 ~~~~~~~v~~~v~~gG~l-~~~Kgvnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~r~~l~~~g- 249 (513)
T PTZ00066 172 LEVHDDYIITKVLNNATI-GERKNMNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERG- 249 (513)
T ss_pred EEEECCEEEEEEEeCcEE-cCCcccccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHhCC-
Confidence 455789999999999999 999999999999999999999999983399999999999999999999999999999888
Q ss_pred CCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCC
Q 036921 248 LSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPT 326 (527)
Q Consensus 248 ~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~Pt 326 (527)
.+++|||||||++|++|||||++++|||||||||||+|+|+|+||.+||+||++|+++|||||+ |||||||++||+||
T Consensus 250 -~~~~IiAKIE~~~av~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PT 328 (513)
T PTZ00066 250 -RHIKIIPKIENIEGLINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPT 328 (513)
T ss_pred -CCceEEEEECCHHHHHHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCc
Confidence 7899999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHH
Q 036921 327 RAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAI 406 (527)
Q Consensus 327 raEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~ 406 (527)
|||++||||||+||+||+|||+|||.|+||+|||++|++||++||+.++|...|.........+.+..+++|.+|+++|.
T Consensus 329 RAEvsDVaNAV~DG~DavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~A~ 408 (513)
T PTZ00066 329 RAESTDVANAVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTPVSVQEAVARSAVETAE 408 (513)
T ss_pred hHHHHHHHHHHHhCCcEEEecchhcCCcCHHHHHHHHHHHHHHHhhccchHHhhhhhhccccCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998766554443222111122457899999999999
Q ss_pred hcCCcEEEEECCCcHHHHHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecCCCCCCCCCccCHH
Q 036921 407 KVKASVIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTNATNE 486 (527)
Q Consensus 407 ~~~a~~Ivv~T~sG~tA~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~~e 486 (527)
+++|++|++||.||+||+++|||||.|||||+ |+++.++|+|+|+|||+|++++.. ++.+
T Consensus 409 ~l~a~aIv~~T~SG~TAr~iSk~RP~~pIia~-------------t~~~~~~R~L~L~wGV~p~~~~~~-------~~~~ 468 (513)
T PTZ00066 409 DINAKLIIALTETGNTARLISKYRPSCTILAL-------------SASPSVVKSLSVARGVTTYVVNSF-------QGTD 468 (513)
T ss_pred hCCCCEEEEECCCcHHHHHHHhhCCCCCEEEE-------------CCCHHHHHHhhcccCcEEEEecCC-------CCHH
Confidence 99999999999999999999999999999999 789999999999999999988643 5788
Q ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEEec-----CCCceEEEEEeC
Q 036921 487 SVLKVALDHGKASGVIKSHDRVVVCQKV-----GDASVVKIIELE 526 (527)
Q Consensus 487 ~~i~~a~~~a~e~g~v~~GD~VVvv~g~-----g~tn~ikv~~v~ 526 (527)
++++.|.+++++.|++++||.||+++|+ |+||++||..|.
T Consensus 469 ~~i~~a~~~~~~~g~~~~GD~vVv~~g~~~~~~g~tn~irv~~v~ 513 (513)
T PTZ00066 469 VVIRNAIALAKERGLVESGDSAIAVHGVKEEVAGSSNLMKVVKIP 513 (513)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCeEEEEEEcC
Confidence 9999999999999999999999999996 789999999873
No 4
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=2.4e-131 Score=1057.52 Aligned_cols=469 Identities=27% Similarity=0.431 Sum_probs=431.9
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeEEeeeCCC-
Q 036921 27 PAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSE- 105 (527)
Q Consensus 27 ~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~~~~~~- 105 (527)
+|||||||||||+|+++|+|++|+++|||+||||||||++|+|++.++++|++++++|++++||+||+||||||+...+
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~~i~~iR~~~~~~~~~vaIl~Dl~GPkIR~g~~~~~ 103 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRDVIRRVRRLNEEKGFAVAVMMDTEGSEIHMGDLGGA 103 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCceEEEecCCC
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999976654
Q ss_pred CcEEeecCCEEEEeeCCCCCC--CCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEeCc
Q 036921 106 KAISLKADGSVVLTPDCGQEA--TSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTA 183 (527)
Q Consensus 106 ~~i~l~~G~~v~l~~~~~~~~--~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~~G 183 (527)
+++.|++||+++|+.+. ..| +.+.++++|++|++.+++||.||+| ||+|.|+| .+++++.+.|+|.+||
T Consensus 104 ~~i~l~~G~~v~lt~~~-~~g~~~~~~i~v~y~~l~~~v~~Gd~Ilid----DG~i~l~V----~~~~~~~v~~~v~~~G 174 (509)
T PLN02762 104 SSAKAEDGEEWTFTVRK-FDGSRPEFTIQVNYDGFAEDVKVGDELVVD----GGMVRFEV----IEKIGPDVKCKCTDPG 174 (509)
T ss_pred ccEEecCCCEEEEeCCc-cCCCCCCcEEeechHHHHHhcCCCCEEEEe----CCEEEEEE----EEEECCEEEEEEEeCc
Confidence 57999999999999864 334 3578999999999999999999999 99999999 4557889999999999
Q ss_pred EecCCCccccc-------CCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEe
Q 036921 184 TLAGSLFTLHA-------SQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAK 256 (527)
Q Consensus 184 ~l~~~~kgvnl-------p~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaK 256 (527)
.| +++||||+ |++.+++|+||+||++||. |++++|+|||++||||+++||+++|++|.+.|...+++||||
T Consensus 175 ~l-~~~KgvNl~~~g~~~p~~~~~lp~ltekD~~di~-f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~~~~~IiAK 252 (509)
T PLN02762 175 LL-LPRANLTFWRDGSLVRERNAMLPTISSKDWLDID-FGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRDSDIGVIAK 252 (509)
T ss_pred EE-cCCCceeeccccCCCCCCccCCCCCCHHHHHHHH-HHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCceEEEE
Confidence 99 99999999 9999999999999999996 999999999999999999999999999998862137999999
Q ss_pred ecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHH
Q 036921 257 IENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN 335 (527)
Q Consensus 257 IEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n 335 (527)
||+++|++||+||++++|||||||||||+|+|+++||.+||+||++|+++|||||+ |||||||++||+|||||++||||
T Consensus 253 IE~~~av~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaN 332 (509)
T PLN02762 253 IESLDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSE 332 (509)
T ss_pred eCCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhh--c-ccCCCCChHHHHHHHHHHHHHhcCCcE
Q 036921 336 AVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTV--K-CVGEPMTHLESIASSAVRAAIKVKASV 412 (527)
Q Consensus 336 av~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~--~-~~~~~~~~~~~ia~~av~~a~~~~a~~ 412 (527)
||+||+||+|||+|||+|+||+|||++|++||+++|+++.+...+..+. . ....+.+..+++|.+|+++|..++|++
T Consensus 333 AVlDGtDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A~~l~a~a 412 (509)
T PLN02762 333 AVRQRADALMLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDA 412 (509)
T ss_pred HHHhCCCEEEEcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHHhhcCCCE
Confidence 9999999999999999999999999999999999998643221111100 0 001112457899999999999999999
Q ss_pred EEEECCCcHHHHHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecCCCCCCCCCccCHHHHHHHH
Q 036921 413 IICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTNATNESVLKVA 492 (527)
Q Consensus 413 Ivv~T~sG~tA~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~~e~~i~~a 492 (527)
|+|||.||+||+++|||||.|||||+ |++++++|+|+|+|||+|++.+.. .+.+++++.+
T Consensus 413 Iv~~T~sG~tA~~iSk~RP~~pIia~-------------t~~~~~~r~l~l~~GV~p~~~~~~-------~~~~~~~~~~ 472 (509)
T PLN02762 413 IFVYTKHGHMASLLSRNRPDCPIFAF-------------TDTTSVRRRLNLQWGLIPFRLDFS-------DDMESNLNKT 472 (509)
T ss_pred EEEECCCcHHHHHHHhhCCCCCEEEE-------------CCCHHHHHHhhcccCcEEEEeCCC-------CCHHHHHHHH
Confidence 99999999999999999999999999 789999999999999999987544 5788999999
Q ss_pred HHHHHHcCCCCCCCEEEEEEec---CCCceEEEEEeC
Q 036921 493 LDHGKASGVIKSHDRVVVCQKV---GDASVVKIIELE 526 (527)
Q Consensus 493 ~~~a~e~g~v~~GD~VVvv~g~---g~tn~ikv~~v~ 526 (527)
.++++++|++++||.||+++|+ |.||+|||..+.
T Consensus 473 ~~~~~~~g~~~~GD~VVv~~g~~~~g~tn~i~v~~v~ 509 (509)
T PLN02762 473 FSLLKARGMIKSGDLVIAVSDLTPSSMLQSIQVRNVP 509 (509)
T ss_pred HHHHHHcCCCCCCCEEEEEeCCCCCCCceEEEEEEcC
Confidence 9999999999999999999995 999999998863
No 5
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=1.4e-128 Score=1031.57 Aligned_cols=464 Identities=35% Similarity=0.597 Sum_probs=432.8
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeEEeeeCCC-
Q 036921 27 PAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSE- 105 (527)
Q Consensus 27 ~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~~~~~~- 105 (527)
+|||||||||||+|+++|+|++|+++|||+||||||||++++|.++|+++|++++++|++++|++||+||||||+..++
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~~i~~vr~~~~~~~~~i~Il~Dl~GPkiR~g~~~~~ 80 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRIKNLRNVMSKTGKKAAILLDTKGPEIRTMKLEGG 80 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeCCCCceeccccCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999999999999976544
Q ss_pred CcEEeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEeCcEe
Q 036921 106 KAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTATL 185 (527)
Q Consensus 106 ~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~~G~l 185 (527)
+++.|++|+++.|+.+....++.+.++++|++|++.+++||+|++| ||+|.|+| + +++++.+.|+|++||.|
T Consensus 81 ~~i~l~~G~~~~l~~~~~~~~~~~~i~~~~~~~~~~v~~G~~i~id----DG~i~l~V-~---~~~~~~v~~~v~~~G~l 152 (470)
T PRK09206 81 NDVSLKAGQTFTFTTDKSVVGNKERVAVTYEGFTADLSVGNTVLVD----DGLIGMEV-T---AITGNEVICKVLNNGDL 152 (470)
T ss_pred CeeeecCCCEEEEEecCccCCCCCEEEechHHHHhhcCCCCEEEEe----CCEEEEEE-E---EEeCCEEEEEEEECCEe
Confidence 3699999999999987655678889999999999999999999999 99999999 4 55788999999999999
Q ss_pred cCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhh
Q 036921 186 AGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTH 265 (527)
Q Consensus 186 ~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~n 265 (527)
+++||||+||..+++|+||++|++||+ |++++|+|||++||||+++||+++++++.+.|. +++.|||||||++|++|
T Consensus 153 -~s~Kgvn~p~~~~~lp~ltekD~~di~-f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~-~~~~iiaKIEt~eav~n 229 (470)
T PRK09206 153 -GENKGVNLPGVSIALPALAEKDKQDLI-FGCEQGVDFVAASFIRKRSDVLEIREHLKAHGG-ENIQIISKIENQEGLNN 229 (470)
T ss_pred -cCCCceeccCcccCCCCCCHHHHHHHH-HHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCC-CCceEEEEECCHHHHHh
Confidence 999999999999999999999999996 999999999999999999999999999988752 47999999999999999
Q ss_pred HHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEE
Q 036921 266 FDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAI 344 (527)
Q Consensus 266 ldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~i 344 (527)
+|||++++|||||||||||+|+|.+++|.+||+|+++|+++|||+|+ |||||||++||+|||||++||||||+||+||+
T Consensus 230 ldeIl~~~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~Dav 309 (470)
T PRK09206 230 FDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAV 309 (470)
T ss_pred HHHHHHhCCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEE
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred EeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCcHHHH
Q 036921 345 LLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAAR 424 (527)
Q Consensus 345 mLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~tA~ 424 (527)
|||+|||+|+||+|||++|++||+++|+.++|. +..... . ...+..+++|.+|+++|.+++|++|++||.||+||+
T Consensus 310 MLS~ETA~G~yPveaV~~m~~I~~~~E~~~~~~--~~~~~~-~-~~~~~~~~ia~sa~~~A~~l~a~aIv~~T~sG~tA~ 385 (470)
T PRK09206 310 MLSGESAKGKYPLEAVSIMATICERTDRVMNSR--LESNND-N-RKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSAR 385 (470)
T ss_pred EEechhcCCCCHHHHHHHHHHHHHHHHhhcchh--hhhhcc-c-cCCChHHHHHHHHHHHHhcCCCCEEEEECCCcHHHH
Confidence 999999999999999999999999999875543 211111 1 112467999999999999999999999999999999
Q ss_pred HHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecCCCCCCCCCccCHHHHHHHHHHHHHHcCCCCC
Q 036921 425 LIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTNATNESVLKVALDHGKASGVIKS 504 (527)
Q Consensus 425 ~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~~e~~i~~a~~~a~e~g~v~~ 504 (527)
++|||||.|||||+ |++++++|+|+|+|||+|++++.. .+.+++++.+.+++++.|++++
T Consensus 386 ~is~~RP~~pIia~-------------t~~~~~~r~l~l~~GV~p~~~~~~-------~~~~~~~~~a~~~~~~~g~~~~ 445 (470)
T PRK09206 386 SVRKYFPDATILAL-------------TTNEKTARQLVLSKGVVPQLVKEI-------ASTDDFYRLGKELALQSGLAQK 445 (470)
T ss_pred HHHhhCCCCCEEEE-------------CCCHHHHHHhhcccCcEEEEeCCC-------CCHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999 789999999999999999988654 5788999999999999999999
Q ss_pred CCEEEEEEec----CCCceEEEEEe
Q 036921 505 HDRVVVCQKV----GDASVVKIIEL 525 (527)
Q Consensus 505 GD~VVvv~g~----g~tn~ikv~~v 525 (527)
||.||+++|+ |+||++||..+
T Consensus 446 Gd~vvv~~g~~~~~g~tn~i~v~~~ 470 (470)
T PRK09206 446 GDVVVMVSGALVPSGTTNTASVHVL 470 (470)
T ss_pred CCEEEEEeCCCCCCCCCeEEEEEEC
Confidence 9999999995 89999999763
No 6
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=2.1e-128 Score=1029.14 Aligned_cols=463 Identities=28% Similarity=0.472 Sum_probs=434.5
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeEEeeeCCC
Q 036921 26 FPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSE 105 (527)
Q Consensus 26 ~~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~~~~~~ 105 (527)
+.|||||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++|++++|++||||||||++...+
T Consensus 3 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~~i~~vr~~~~~~~~~i~Il~Dl~GpkiR~g~~~~ 82 (476)
T PRK06247 3 RNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRELYKRIREVEDETGRPIGILADLQGPKLRLGRFAD 82 (476)
T ss_pred CCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeeEEEeCCCCceeccccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999987766
Q ss_pred CcEEeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEeCcEe
Q 036921 106 KAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTATL 185 (527)
Q Consensus 106 ~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~~G~l 185 (527)
+++.|++||+++|+.+. ..++.+.++++|++|++.+++||+|++| ||+|.|+| .+++++.+.|+|++||.|
T Consensus 83 ~~i~l~~G~~~~l~~~~-~~~~~~~i~v~~~~l~~~v~~G~~I~id----DG~i~l~V----~~~~~~~i~~~v~~~G~l 153 (476)
T PRK06247 83 GKVQLANGQTFRLDVDD-APGDHDRVSLPHPEIAAALKPGDRLLVD----DGKVRLVV----EACDGDDVVCRVVEGGPV 153 (476)
T ss_pred CcEeccCCCEEEEEecc-cCCCCCEeecChhHhHhhcCCCCEEEEe----CCeEEEEE----EEEECCEEEEEEEeCcEE
Confidence 67999999999999874 4678889999999999999999999999 99999999 455789999999999999
Q ss_pred cCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhh
Q 036921 186 AGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTH 265 (527)
Q Consensus 186 ~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~n 265 (527)
+++||+|+|+..+++|.||++|++||. |++++|+|||++||||+++||+++|++++ +++.|||||||++|++|
T Consensus 154 -~~~Kgvn~p~~~~~~p~ltekD~~di~-f~~~~~vD~ia~SFVr~a~Di~~~r~~l~-----~~~~iiaKIEt~eav~n 226 (476)
T PRK06247 154 -SDRKGVSLPGTVLSVSALTEKDRADLE-FALELGVDWVALSFVQRPEDVEEVRKIIG-----GRVPVMAKIEKPQAIDR 226 (476)
T ss_pred -cCCCccccCCcccCCCCCCHHHHHHHH-HHHHcCCCEEEECCCCCHHHHHHHHHHhh-----hcCeEEEEECCHHHHHh
Confidence 999999999999999999999999996 99999999999999999999999999994 56899999999999999
Q ss_pred HHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEE
Q 036921 266 FDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAI 344 (527)
Q Consensus 266 ldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~i 344 (527)
+|+|++++|||||||||||+++|+++++.+|++|+++|+++|||+|+ |||||||++||+|||||++||||||+||+||+
T Consensus 227 ldeI~~~~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~dG~Dav 306 (476)
T PRK06247 227 LEAIVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLDGADAV 306 (476)
T ss_pred HHHHHHHcCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHhCCcEE
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred EeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCcHHHH
Q 036921 345 LLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAAR 424 (527)
Q Consensus 345 mLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~tA~ 424 (527)
|||+|||+|+||+|||++|++||+++|+.++|...|..... ....+..+++|.+|+++|.++++++|++||.||+||+
T Consensus 307 MLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~ia~sa~~~A~~l~a~~Iv~~T~sG~ta~ 384 (476)
T PRK06247 307 MLSAETASGKYPVEAVRTMARIIRQVERDPTYPPLIHAQRP--QPEATKRDAISYAARDIAERLDLAALVAYTSSGDTAL 384 (476)
T ss_pred EEcchhcCCCCHHHHHHHHHHHHHHHhhccchhhhhhhccc--ccCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCcHHHH
Confidence 99999999999999999999999999987666544432111 1113457899999999999999999999999999999
Q ss_pred HHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecCCCCCCCCCccCHHHHHHHHHHHHHHcCCCCC
Q 036921 425 LIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTNATNESVLKVALDHGKASGVIKS 504 (527)
Q Consensus 425 ~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~~e~~i~~a~~~a~e~g~v~~ 504 (527)
++|||||.|||+|+ |++++++|+|+|+|||+|++.+.. .+.++++..+.+++++.|++++
T Consensus 385 ~isk~RP~~pI~a~-------------t~~~~~~r~l~l~~GV~p~~~~~~-------~~~~~~~~~a~~~~~~~g~~~~ 444 (476)
T PRK06247 385 RAARERPPLPILAL-------------TPNPETARRLALTWGVHCVVVDDA-------RDTDDMVRRADRIALAEGFYKR 444 (476)
T ss_pred HHHhhCCCCCEEEE-------------CCCHHHHHHhhcccCCeeEecCCC-------CCHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999 789999999999999999988644 5788999999999999999999
Q ss_pred CCEEEEEEec-----CCCceEEEEEeC
Q 036921 505 HDRVVVCQKV-----GDASVVKIIELE 526 (527)
Q Consensus 505 GD~VVvv~g~-----g~tn~ikv~~v~ 526 (527)
||.||+++|+ |.||++||.+|+
T Consensus 445 Gd~vvv~~g~~~~~~g~tn~i~v~~v~ 471 (476)
T PRK06247 445 GDRVVIVAGVPPGTPGSTNMLRIAYIG 471 (476)
T ss_pred CCEEEEEeCCCCCCCCCCeEEEEEEeC
Confidence 9999999996 789999999985
No 7
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-127 Score=1018.26 Aligned_cols=468 Identities=36% Similarity=0.612 Sum_probs=438.3
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeEEeeeCCC
Q 036921 26 FPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSE 105 (527)
Q Consensus 26 ~~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~~~~~~ 105 (527)
..|||||||||||+++++|.|++|+++||||||||||||++|+|.+.++++|++++++|+|++||+||||||||++...+
T Consensus 3 ~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~~i~~vR~~~~~~~~~vaIl~DlkGPkIR~g~~~~ 82 (477)
T COG0469 3 MMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKKRIDNVREAAEKLGRPVAILLDLKGPKIRTGKFKG 82 (477)
T ss_pred CCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHHHHHHHHHHHHHhCCceEEEEcCCCCcceeEecCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred CcEEeecCCEEEEeeCCCC-CCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEeCcE
Q 036921 106 KAISLKADGSVVLTPDCGQ-EATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTAT 184 (527)
Q Consensus 106 ~~i~l~~G~~v~l~~~~~~-~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~~G~ 184 (527)
+.+.|+.|++++|+.+... .++.+.++++|++|+++|++||+||+| ||+++|+| .+++++.+.|+|.+||.
T Consensus 83 ~~~~l~~G~~~~~~~~~~~~~~~~~~v~v~y~~l~~dV~~G~~iLlD----DG~i~l~V----~~v~~~~v~~~v~n~G~ 154 (477)
T COG0469 83 GAVELEKGEKFTLTTDDKVGEGDEERVSVDYKDLAKDVKPGDRILLD----DGKIELRV----VEVDGDAVITRVLNGGV 154 (477)
T ss_pred CcEEeecCCEEEEeccccccCCCCcEEeccHHHHHhhcCCCCEEEEe----CCeeEEEE----EEeeCCEEEEEEEeCCC
Confidence 7899999999999998752 445789999999999999999999999 99999999 55677789999999999
Q ss_pred ecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHh
Q 036921 185 LAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLT 264 (527)
Q Consensus 185 l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~ 264 (527)
| +++||||+||..+++|+||+||++||. |++++|+|||++|||++++|++++|++|.+.|. .+++||||||+++||+
T Consensus 155 l-~~~KgvN~pg~~l~~palteKD~~dl~-f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~-~~~~iiaKIE~~eav~ 231 (477)
T COG0469 155 L-SSNKGVNLPGVDLSLPALTEKDKEDLK-FGLEQGVDFVALSFVRNAEDVEEVREILAETGG-RDVKIIAKIENQEAVD 231 (477)
T ss_pred c-cCCCceecCCCCCCCCCCCccCHHHHH-HHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCC-CCceEEEeecCHHHHh
Confidence 9 999999999999999999999999996 999999999999999999999999999988763 5699999999999999
Q ss_pred hHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcE
Q 036921 265 HFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDA 343 (527)
Q Consensus 265 nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~ 343 (527)
|||+|+++||||||||||||+|+|.++||.+||+||++||.+|||||+ |||||||++||+|||||++||||||+||+||
T Consensus 232 NldeIi~~SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEvsDVanAvlDGtDA 311 (477)
T COG0469 232 NLDEIIEASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDA 311 (477)
T ss_pred HHHHHHHhcCceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhhhHHHHHHHhCCce
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred EEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCcHHH
Q 036921 344 ILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAA 423 (527)
Q Consensus 344 imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~tA 423 (527)
+|||+|||.|+||+|+|++|++||.++|+.+.+..++.... .....+..++|+.+++++|..+++++|+++|.||+||
T Consensus 312 vMLS~ETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~--~~~~~~~~e~ia~aa~~~a~~l~~k~iv~~T~sG~ta 389 (477)
T COG0469 312 VMLSGETAAGKYPVEAVATMARIAKEAEKELPDNQLLRFRV--DPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTA 389 (477)
T ss_pred eeechhhhcCCCHHHHHHHHHHHHHHHhcccchhhhhhhcc--ccccccHHHHHHHHHHHHHHhcCCcEEEEEcCCCHHH
Confidence 99999999999999999999999999999987443332211 1223456899999999999999999999999999999
Q ss_pred HHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecCCCCCCCCCccCHHHHHHHHHHHHHHcCCCC
Q 036921 424 RLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTNATNESVLKVALDHGKASGVIK 503 (527)
Q Consensus 424 ~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~~e~~i~~a~~~a~e~g~v~ 503 (527)
+++|||||.+||||+ |++++++|+|.++|||+|++++... .+.+..+..+++.+++.|+++
T Consensus 390 ~~isk~Rp~~pIia~-------------t~~~~v~r~l~l~~GV~p~~~~~~~------~~~~~~~~~~~~~~~~~g~~~ 450 (477)
T COG0469 390 RLLSKYRPEAPIIAL-------------TPNERVARRLALVWGVYPLLVEEKP------TSTDEMVEEAVEKLLESGLVK 450 (477)
T ss_pred HHHhcCCCCCcEEEE-------------CCCHHHHhhhceeecceeEEecCCC------CcHHHHHHHHHHHHHhcCccc
Confidence 999999999999999 7899999999999999999997532 578999999999999999999
Q ss_pred CCCEEEEEEec-----CCCceEEEEEe
Q 036921 504 SHDRVVVCQKV-----GDASVVKIIEL 525 (527)
Q Consensus 504 ~GD~VVvv~g~-----g~tn~ikv~~v 525 (527)
+||.||+++|. |+||++||..+
T Consensus 451 ~gD~vvit~G~~~~~~G~tn~ikv~~v 477 (477)
T COG0469 451 KGDLVVITAGVPMGTVGTTNTIKVLTV 477 (477)
T ss_pred CCCEEEEecCcccccCCCceeEEEEeC
Confidence 99999999995 88999999864
No 8
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=7.5e-126 Score=1036.74 Aligned_cols=467 Identities=32% Similarity=0.542 Sum_probs=436.6
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeEEeeeCCC
Q 036921 26 FPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSE 105 (527)
Q Consensus 26 ~~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~~~~~~ 105 (527)
.+|||||||||||+|+++|+|++|+++|||+||||||||++|+|.++++++|++++++++|++|++||+||||||+...+
T Consensus 6 ~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~~i~~ir~~~~~~~~~i~i~~Dl~GpkiR~g~~~~ 85 (590)
T PRK06354 6 LMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARIKNIREASKKLGKTVGILQDLQGPKIRLGRFED 85 (590)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCceeccccCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999987766
Q ss_pred CcEEeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEeCcEe
Q 036921 106 KAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTATL 185 (527)
Q Consensus 106 ~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~~G~l 185 (527)
+++.|++|++++|+.+. ..++++.|+++|++|++.+++||.||+| ||+|.|+| ++++ .+++.++|+|++||.|
T Consensus 86 ~~i~l~~G~~~~l~~~~-~~~~~~~i~v~~~~l~~~v~~Gd~i~id----DG~i~l~V-~~~~-~~~~~v~~~v~~~g~l 158 (590)
T PRK06354 86 GPIELKTGDEFILTSRE-VLGTQEKFSVTYDGLADEVPVGSRILLD----DGLIELEV-EEVD-KADGELHCKVLVGGVL 158 (590)
T ss_pred CcEEecCCCEEEEEecc-cCCCCCEEeechHHHHhhcCCCCEEEEe----CCeEEEEE-EEEE-cCCCEEEEEEEeCeEE
Confidence 68999999999999874 4678889999999999999999999999 99999999 5542 2378999999999999
Q ss_pred cCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHH-cCCCCCceEEEeecChHhHh
Q 036921 186 AGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSK-LGDLSQTQIFAKIENIEGLT 264 (527)
Q Consensus 186 ~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~-~~~~~~~~IiaKIEt~~av~ 264 (527)
+++||||+|+..+++|+||++|++||+ |++++++|||++|||++++||+++++++.+ .+ .++.|||||||++|++
T Consensus 159 -~~~Kgvn~p~~~~~~p~ltekD~~di~-f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~--~~~~iiaKIEt~eav~ 234 (590)
T PRK06354 159 -SNKKGVNFPGVSLSLPAITEKDREDLI-FGLEQGVDWIALSFVRNPSDVLEIRELIEEHNG--KHIPIIAKIEKQEAID 234 (590)
T ss_pred -CCCCcccccCCccCCCCCCHHHHHHHH-HHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcC--CCceEEEEECCHHHHH
Confidence 999999999999999999999999996 999999999999999999999999999955 45 7899999999999999
Q ss_pred hHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcE
Q 036921 265 HFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDA 343 (527)
Q Consensus 265 nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~ 343 (527)
|+|||++++|||||||||||+++|.+++|.+|++|+++|+++|||||+ |||||||++||+|||||++||||||+||+||
T Consensus 235 nldeI~~~~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~DG~Da 314 (590)
T PRK06354 235 NIDAILELCDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILDGTDA 314 (590)
T ss_pred hHHHHHHhcCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcE
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred EEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCcHHH
Q 036921 344 ILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAA 423 (527)
Q Consensus 344 imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~tA 423 (527)
+|||+|||+|+||+|||++|++||+++|+.++|..+|..... ...+..+++|.+|+++|.+++|++|++||.||+||
T Consensus 315 vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~---~~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta 391 (590)
T PRK06354 315 VMLSNETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSKRPE---FTTTITNAISQAVSHIALQLDAAAIVTLTKSGATA 391 (590)
T ss_pred EEecccccCCCCHHHHHHHHHHHHHHHHhccchhhhhhhccc---cCCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHH
Confidence 999999999999999999999999999998766544432211 12346789999999999999999999999999999
Q ss_pred HHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecCCCCCCCCCccCHHHHHHHHHHHHHHcCCCC
Q 036921 424 RLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTNATNESVLKVALDHGKASGVIK 503 (527)
Q Consensus 424 ~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~~e~~i~~a~~~a~e~g~v~ 503 (527)
+++|||||.|||||+ |++++++|||+|+|||+|++.+.. .+.+++++.+.+++++.|+++
T Consensus 392 ~~vsk~Rp~~pI~a~-------------t~~~~~~r~l~l~~GV~p~~~~~~-------~~~~~~~~~~~~~~~~~g~~~ 451 (590)
T PRK06354 392 RNVSKYRPKTPILAV-------------TPNESVARRLQLVWGVTPLLVLDA-------PSTDETFDAAINVAQESGLLK 451 (590)
T ss_pred HHHHhhCCCCCEEEE-------------CCCHHHHHHhhcccCcEEEEeCCC-------CCHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999 789999999999999999998654 468899999999999999999
Q ss_pred CCCEEEEEEec-----CCCceEEEEEeC
Q 036921 504 SHDRVVVCQKV-----GDASVVKIIELE 526 (527)
Q Consensus 504 ~GD~VVvv~g~-----g~tn~ikv~~v~ 526 (527)
+||.||+++|. |+||++||..++
T Consensus 452 ~gd~vv~~~g~~~~~~g~tn~~~v~~v~ 479 (590)
T PRK06354 452 QGDLVVITAGTLVGESGSTDLMKVHVVG 479 (590)
T ss_pred CCCEEEEEeCCCCCcCCCceeEEEEEec
Confidence 99999999995 799999999883
No 9
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=9.3e-126 Score=1015.70 Aligned_cols=472 Identities=40% Similarity=0.660 Sum_probs=437.9
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeEEeeeCCCC
Q 036921 27 PAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEK 106 (527)
Q Consensus 27 ~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~~~~~~~ 106 (527)
+|+|||||||||+|+++|+|++|+++|||+||||||||++|+|+++++++|++++++|++++|++||||||||++...++
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~~i~~vr~~~~~~~~~i~il~Dl~GpkiR~g~~~~~ 80 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRIDNVREAAEKTGGPVAIALDTKGPEIRTGLFKGG 80 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeecccCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999766543
Q ss_pred -cEEeecCCEEEEeeCCC-CCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCC-eEEEEEEeCc
Q 036921 107 -AISLKADGSVVLTPDCG-QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGN-DVTCVIKNTA 183 (527)
Q Consensus 107 -~i~l~~G~~v~l~~~~~-~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~-~v~~~v~~~G 183 (527)
++.|++||+++|+++.. ..|+.+.|+++|++|++.+++||.|++| ||+|.|+| + +++++ .++|+|.+||
T Consensus 81 ~~i~l~~G~~~~lt~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~i~id----DG~i~l~V-~---~~~~~~~i~~~v~~~G 152 (480)
T cd00288 81 KDISLKAGDKFLVTTDPAAKKGTKEKIYVDYKNLTKDVSPGNTILVD----DGLLSLKV-L---SKDDDKTLVCEVLNGG 152 (480)
T ss_pred CceecCCCCEEEEEecccccCCCCcEEeechHHhHhhcCCCCEEEEe----CCEEEEEE-E---EEcCCceEEEEEEeCe
Confidence 79999999999998753 4678889999999999999999999999 99999999 4 55677 8999999999
Q ss_pred EecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhH
Q 036921 184 TLAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGL 263 (527)
Q Consensus 184 ~l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av 263 (527)
.| +++||||+|+..+++|+||++|++||+ |++++|+|||++|||++++||+++|+++...| .++.+||||||++|+
T Consensus 153 ~l-~~~kgin~p~~~~~~p~ltekD~~di~-f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~--~~~~iiakIEt~~av 228 (480)
T cd00288 153 VL-GSRKGVNLPGTDVDLPALSEKDKADLR-FGVEQGVDMIFASFVRKASDVLEIREVLGEKG--KDIKIIAKIENQEGV 228 (480)
T ss_pred EE-cCCCceEeeCcccCCCCCCHHHHHHHH-HHHHcCCCEEEECCCCCHHHHHHHHHHHHhcC--CCceEEEEECCHHHH
Confidence 99 999999999999999999999999996 99999999999999999999999999999887 789999999999999
Q ss_pred hhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCc
Q 036921 264 THFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSD 342 (527)
Q Consensus 264 ~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D 342 (527)
+|+++|++++|||||||||||+++|.++++.+|++|+++|+++|||+|+ |||||||++||+|||||++||||||+||+|
T Consensus 229 ~nldeI~~~~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D 308 (480)
T cd00288 229 NNFDEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTD 308 (480)
T ss_pred HhHHHHHHhcCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred EEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCcHH
Q 036921 343 AILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRA 422 (527)
Q Consensus 343 ~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~t 422 (527)
|+|||+|||+|+||+|||++|++||+++|+.++|...|...........+..++++.+|+++|..+++++||+||.||+|
T Consensus 309 ~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l~akaIVv~T~SG~T 388 (480)
T cd00288 309 CVMLSGETAKGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRT 388 (480)
T ss_pred EEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHH
Confidence 99999999999999999999999999999876655444322211111224578999999999999999999999999999
Q ss_pred HHHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecCCCCCCCCCccCHHHHHHHHHHHHHHcCCC
Q 036921 423 ARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTNATNESVLKVALDHGKASGVI 502 (527)
Q Consensus 423 A~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~~e~~i~~a~~~a~e~g~v 502 (527)
|+++|+|||.|||||+ |++++++|+|+|+|||+|++++... .. |+++.++++..+.++++++|++
T Consensus 389 A~~lS~~RP~~pIiav-------------T~~~~~~r~l~l~~GV~p~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~g~~ 453 (480)
T cd00288 389 ARLVSKYRPNAPIIAV-------------TRNEQTARQLHLYRGVYPVLFEEPK-PG-WQEDTDARLKAAVNVAKEKGLL 453 (480)
T ss_pred HHHHHhhCCCCCEEEE-------------cCCHHHhhheeeccCcEEEEecccc-cc-cCCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999 7899999999999999999886532 23 4678899999999999999999
Q ss_pred CCCCEEEEEEec----CCCceEEEEEe
Q 036921 503 KSHDRVVVCQKV----GDASVVKIIEL 525 (527)
Q Consensus 503 ~~GD~VVvv~g~----g~tn~ikv~~v 525 (527)
++||.||+++|+ |+||++||.++
T Consensus 454 ~~gd~vv~~~g~~~~~~~tn~i~v~~~ 480 (480)
T cd00288 454 KKGDLVVVVQGWPVGSGSTNTMRILTV 480 (480)
T ss_pred CCCCEEEEEeCCCCCCCCCeEEEEEEC
Confidence 999999999997 79999999875
No 10
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=1.5e-123 Score=995.20 Aligned_cols=453 Identities=36% Similarity=0.574 Sum_probs=426.6
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeEEeeeCCCC
Q 036921 27 PAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEK 106 (527)
Q Consensus 27 ~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~~~~~~~ 106 (527)
.|+|||||||||+|+++|+|++|+++|||+||||||||++++|+++++++|++++++|+|++|++||+|||||++...++
T Consensus 3 ~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~~i~~ir~~~~~~~~~i~I~~Dl~GpkiR~g~~~~~ 82 (465)
T PRK05826 3 LRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRAALVREIAAKLGRPVAILLDLKGPKIRVGKFKEG 82 (465)
T ss_pred CCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeeccccCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999877667
Q ss_pred cEEeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEeCcEec
Q 036921 107 AISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTATLA 186 (527)
Q Consensus 107 ~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~~G~l~ 186 (527)
++.|++|++|+|+.+....++++.|++||++|++.+++||.||+| ||+|.|+| .+++++.++|+|++||.|
T Consensus 83 ~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~Gd~ilid----DG~i~l~V----~~~~~~~v~~~v~~~g~l- 153 (465)
T PRK05826 83 KITLKTGDKFTLDTDQKEEGDKERVGVDYKGLPKDVKPGDILLLD----DGKLQLKV----VEVDGDEVETEVKNGGPL- 153 (465)
T ss_pred cEEecCCCEEEEEeccccCCCCCEEEechHHhHhhcCCCCEEEEe----CCeEEEEE----EEEeCCEEEEEEEeCcEe-
Confidence 799999999999988555688889999999999999999999999 99999999 456789999999999999
Q ss_pred CCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCC-CceEEEeecChHhHhh
Q 036921 187 GSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLS-QTQIFAKIENIEGLTH 265 (527)
Q Consensus 187 ~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~-~~~IiaKIEt~~av~n 265 (527)
+++||||+|++.+++|+||++|.++|+ |++++|+|+|++|||+|++|++++++++.+.| . ++.|||||||++|++|
T Consensus 154 ~s~kgvnlp~~~~~lp~lte~D~~~i~-~ald~g~d~I~~sfV~saedv~~l~~~l~~~~--~~~~~iiakIEt~eav~n 230 (465)
T PRK05826 154 SNNKGINIPGGGLSLPALTEKDKADIK-FAAEQGVDYIAVSFVRSAEDVEEARRLLREAG--CPHAKIIAKIERAEAVDN 230 (465)
T ss_pred cCCceeeccCcccCCCCCChhhHHHHH-HHHHCCCCEEEECCCCCHHHHHHHHHHHHHcC--CcCceEEEEEcCHHHHHh
Confidence 999999999999999999999999996 99999999999999999999999999999988 6 8999999999999999
Q ss_pred HHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEE
Q 036921 266 FDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAI 344 (527)
Q Consensus 266 ldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~i 344 (527)
+|||++++|||||||||||+++|.++++.+|++|+++|+++|||+|+ |||||||++||+|||||++||+|||+||+||+
T Consensus 231 ldeI~~~~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~v 310 (465)
T PRK05826 231 IDEIIEASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAV 310 (465)
T ss_pred HHHHHHHcCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEE
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred EeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC-CcEEEEECCCcHHH
Q 036921 345 LLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK-ASVIICFTSSGRAA 423 (527)
Q Consensus 345 mLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-a~~Ivv~T~sG~tA 423 (527)
|||+|||+|+||+|||++|++||+++|+.+++...+.... ....+..+++|.+|+++|.+++ |++|||||.||+||
T Consensus 311 mLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~---~~~~~~~~~ia~aa~~~a~~l~~a~~Ivv~T~sG~ta 387 (465)
T PRK05826 311 MLSGETAAGKYPVEAVEAMARICKGAEKEFSINLSKHRLD---RQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTA 387 (465)
T ss_pred EeccccccCcCHHHHHHHHHHHHHHHHhccchhhhhhhcc---ccccchHHHHHHHHHHHHHhcCCCCEEEEECCCcHHH
Confidence 9999999999999999999999999999766532222111 1113567999999999999999 99999999999999
Q ss_pred HHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecCCCCCCCCCccCHHHHHHHHHHHHHHcCCCC
Q 036921 424 RLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTNATNESVLKVALDHGKASGVIK 503 (527)
Q Consensus 424 ~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~~e~~i~~a~~~a~e~g~v~ 503 (527)
+++|||||.|||||+ |++++++|+|+|+|||+|++++.. .+.+..++.|++++++.|+++
T Consensus 388 ~~isk~RP~~pI~~~-------------t~~~~~~r~l~l~~GV~p~~~~~~-------~~~~~~~~~a~~~~~~~g~~~ 447 (465)
T PRK05826 388 RLISRFRPGAPIFAV-------------TRDEKTQRRLALYRGVYPVLFDSA-------ADTDDAAEEALRLLLEKGLVE 447 (465)
T ss_pred HHHHhhCCCCCEEEE-------------cCCHHHHHHhhcccCcEEEEeCCC-------CCHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999 789999999999999999988643 578889999999999999999
Q ss_pred CCCEEEEEEec
Q 036921 504 SHDRVVVCQKV 514 (527)
Q Consensus 504 ~GD~VVvv~g~ 514 (527)
+||.||+++|.
T Consensus 448 ~gd~vvvv~g~ 458 (465)
T PRK05826 448 SGDLVVVTSGD 458 (465)
T ss_pred CCCEEEEEeCC
Confidence 99999999997
No 11
>PLN02623 pyruvate kinase
Probab=100.00 E-value=1.9e-120 Score=980.32 Aligned_cols=463 Identities=27% Similarity=0.460 Sum_probs=431.6
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHc-CCceEEEecCCCCeEEeeeCC
Q 036921 26 FPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTT-KKLCAVMLDTVGPELQVVNKS 104 (527)
Q Consensus 26 ~~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~-~~~v~i~~Dl~GpkiR~~~~~ 104 (527)
..|||||||||||+|+++|+|++|+++|||+||||||||++++|++.++++|+++++. +++++|++||+|||||++..+
T Consensus 108 ~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~RlNfSHg~~e~h~~~i~~vr~~~~~~~~~~iaIl~Dl~GPkIRig~~~ 187 (581)
T PLN02623 108 VRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLP 187 (581)
T ss_pred CCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCceEEEecCCCCceecccCC
Confidence 5689999999999999999999999999999999999999999999999999999986 489999999999999997765
Q ss_pred CCcEEeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEeCcE
Q 036921 105 EKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTAT 184 (527)
Q Consensus 105 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~~G~ 184 (527)
+ ++.|++||+|+|+.+. ..++.+.++++|++|++.+++||.||+| ||+|.|+| .+++++.++|+|++||.
T Consensus 188 ~-~i~l~~G~~v~lt~~~-~~g~~~~i~v~y~~l~~~v~~Gd~Ilid----DG~i~l~V----~~~~~~~v~~~V~~gG~ 257 (581)
T PLN02623 188 Q-PIMLEEGQEFTFTIKR-GVSTEDCVSVNYDDFVNDVEVGDMLLVD----GGMMSLAV----KSKTSDSVKCEVVDGGE 257 (581)
T ss_pred C-CEEecCCCEEEEecCc-cCCCCCEEeechHHHHhhCCCCCEEEEe----CCeEEEEE----EEEECCEEEEEEEeceE
Confidence 4 7999999999999874 3578889999999999999999999999 99999999 45678999999999999
Q ss_pred ecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHh
Q 036921 185 LAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLT 264 (527)
Q Consensus 185 l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~ 264 (527)
| +++||||+||+.+++|+||+||++||+ |++++|+|||++|||++++||+++++++...| .++.||+||||++|++
T Consensus 258 L-~s~KgvNlpg~~~~lp~lTekD~~di~-f~~~~~vD~ialSFVr~a~DV~~~r~~l~~~~--~~~~iiakIEt~eaVe 333 (581)
T PLN02623 258 L-KSRRHLNVRGKSATLPSITEKDWEDIK-FGVENKVDFYAVSFVKDAQVVHELKDYLKSCN--ADIHVIVKIESADSIP 333 (581)
T ss_pred e-cCCCCCCCCCCcCCCCCCCHHHHHHHH-HHHHcCCCEEEECCCCCHHHHHHHHHHHHHcC--CcceEEEEECCHHHHH
Confidence 9 999999999999999999999999996 99999999999999999999999999999988 7899999999999999
Q ss_pred hHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcE
Q 036921 265 HFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDA 343 (527)
Q Consensus 265 nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~ 343 (527)
|+|||++.+|||||||||||+++|+++++.+|++|+++|+++|||+|+ |||||||+.+|.|||||++|++|++.+|+|+
T Consensus 334 NldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~ 413 (581)
T PLN02623 334 NLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADA 413 (581)
T ss_pred hHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCE
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred EEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCcHHH
Q 036921 344 ILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAA 423 (527)
Q Consensus 344 imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~tA 423 (527)
+|||+||+.|+||+|||++|++||+++|+.+++...+..... ....+..+++|.+|+++|..++++ |++||+||+||
T Consensus 414 vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~ia~sA~~~A~~l~a~-Ivv~T~sG~tA 490 (581)
T PLN02623 414 VMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQ--AFKNHMSEMFAFHATMMANTLGTS-IIVFTRTGFMA 490 (581)
T ss_pred EEecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhcc--ccCCChHHHHHHHHHHHHHhcCCc-EEEECCCcHHH
Confidence 999999999999999999999999999987655322221111 112345789999999999999999 99999999999
Q ss_pred HHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecCCCCCCCCCccCHHHHHHHHHHHHHHcCCCC
Q 036921 424 RLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTNATNESVLKVALDHGKASGVIK 503 (527)
Q Consensus 424 ~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~~e~~i~~a~~~a~e~g~v~ 503 (527)
+++|||||.|||||+ |++++++|+|+|+|||+|++++.. .+.|++++.+++++++.|+++
T Consensus 491 ~~lSr~RP~~pI~av-------------T~~~~~aR~L~L~~GV~P~~~~~~-------~~~e~~i~~a~~~~~~~g~v~ 550 (581)
T PLN02623 491 ILLSHYRPSGTIFAF-------------TNEKRIQQRLALYQGVCPIYMQFS-------DDAEETFARALSLLLNKGMVK 550 (581)
T ss_pred HHHHhhCCCCCEEEE-------------CCCHHHHHHhhcccccEEEecCCC-------CCHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999 789999999999999999987643 578899999999999999999
Q ss_pred CCCEEEEEEe--c-----CCCceEEEEEe
Q 036921 504 SHDRVVVCQK--V-----GDASVVKIIEL 525 (527)
Q Consensus 504 ~GD~VVvv~g--~-----g~tn~ikv~~v 525 (527)
+||.||+++| . |+||++||.+|
T Consensus 551 ~GD~vviv~g~~~p~~~~g~tn~i~V~~v 579 (581)
T PLN02623 551 EGEEVALVQSGRQPIWRSESTHHIQVRKV 579 (581)
T ss_pred CCCEEEEEeccCCCCCCCCCCeEEEEEEe
Confidence 9999999986 1 78999999886
No 12
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=6.5e-119 Score=953.92 Aligned_cols=446 Identities=34% Similarity=0.565 Sum_probs=408.9
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeEEeeeCCCCcEEeecCCEEEEeeCC--CCCCCCcEE
Q 036921 54 MSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAISLKADGSVVLTPDC--GQEATSQVL 131 (527)
Q Consensus 54 ~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~~~~~~~~i~l~~G~~v~l~~~~--~~~~~~~~i 131 (527)
|||||||||||++|+|+++++++|++++++|++++||+||+||||||+...++++.|++|++++|+.+. ...++.+.|
T Consensus 1 ~~v~RlN~sHg~~e~h~~~i~~vr~~~~~~~~~i~il~Dl~GPkiR~g~~~~~~~~l~~G~~~~l~~~~~~~~~~~~~~i 80 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPEIRTGLFVGGEAVMERGATCYVTTDPAFADKGTKDKF 80 (454)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCceeccccCCCcEEecCCCEEEEEeccccccCCCCCEE
Confidence 799999999999999999999999999999999999999999999998766567999999999999874 235778899
Q ss_pred eeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeC-CeEEEEEEeCcEecCCCcccccCCccccCCCCCHhhHH
Q 036921 132 PINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKG-NDVTCVIKNTATLAGSLFTLHASQIRIELPTLSDKDKE 210 (527)
Q Consensus 132 ~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~-~~v~~~v~~~G~l~~~~kgvnlp~~~~~lp~lt~~D~~ 210 (527)
+++|++|++.+++||.||+| ||+|.|+| + ++++ +.++|+|++||.| +++||||+||..+++|.+|++|.+
T Consensus 81 ~v~~~~l~~~v~~G~~ilid----DG~i~l~V-~---~~~~~~~v~~~v~~gG~l-~~~kgvnlp~~~~~l~~ltekD~~ 151 (454)
T PTZ00300 81 YIDYQNLSKVVRPGGYIYID----DGILILHV-Q---SHEDEQTLKCTVTNAHTI-SDRRGVNLPGCDVDLPAVSAKDCA 151 (454)
T ss_pred EecCcccccccCCCCEEEEe----CCeEEEEE-E---EEcCCceEEEEEecCcEe-cCCCccccCCCccCCCCCChhhHH
Confidence 99999999999999999999 99999999 4 4454 6899999999999 999999999999999999999999
Q ss_pred HHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCch
Q 036921 211 VISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPE 290 (527)
Q Consensus 211 di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~ 290 (527)
+|. |++++|+|+|++|||+|++|+++++++++..| .++.|||||||++|++|||+|++.+|||||||||||+|+|.+
T Consensus 152 dI~-~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~--~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e 228 (454)
T PTZ00300 152 DLQ-FGVEQGVDMIFASFIRSAEQVGEVRKALGAKG--GDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAE 228 (454)
T ss_pred HHH-HHHHCCCCEEEECCCCCHHHHHHHHHHHHhcC--CCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChH
Confidence 996 99999999999999999999999999998887 789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHH
Q 036921 291 KVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 291 ~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
++|.+||+|+++|+++|||+|+ |||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++||++
T Consensus 229 ~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~ 308 (454)
T PTZ00300 229 KVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLE 308 (454)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHhhCCCCCEEEEeeccccccccc
Q 036921 370 AEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLK 449 (527)
Q Consensus 370 aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~tA~~is~~RP~~PIiAv~~~~~~~~~~~ 449 (527)
||+.+++...|.........+.+..+++|.+|+++|.+++|++|+|||.||+||+++|||||.|||||+
T Consensus 309 aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~----------- 377 (454)
T PTZ00300 309 AQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCV----------- 377 (454)
T ss_pred HHhhhchhhhhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEE-----------
Confidence 998754433333221111122345789999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHhhccccccEEEecCCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEec----CCCceEEEEEe
Q 036921 450 WSFSGAFEARQSLIVRGLFPMLADPRHPAESTNATNESVLKVALDHGKASGVIKSHDRVVVCQKV----GDASVVKIIEL 525 (527)
Q Consensus 450 ~~t~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~~e~~i~~a~~~a~e~g~v~~GD~VVvv~g~----g~tn~ikv~~v 525 (527)
|++++++|+|+|+|||+|++.+...... .++.++++..++++++++|++++||.||+++|+ |+||++||+.+
T Consensus 378 --t~~~~~ar~l~l~~GV~p~~~~~~~~~~--~~~~~~~~~~a~~~~~~~g~~~~gd~vvi~~g~~~~~g~tn~i~v~~~ 453 (454)
T PTZ00300 378 --TTRLQTCRQLNITQGVESVFFDAERLGH--DEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHADHKVKGYANQTRIILV 453 (454)
T ss_pred --CCCHHHHHHhhcccCcEEEEeccccccc--cCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEe
Confidence 7899999999999999999876411011 256788999999999999999999999999996 89999999987
Q ss_pred C
Q 036921 526 E 526 (527)
Q Consensus 526 ~ 526 (527)
.
T Consensus 454 ~ 454 (454)
T PTZ00300 454 S 454 (454)
T ss_pred C
Confidence 4
No 13
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=5.2e-117 Score=951.88 Aligned_cols=465 Identities=40% Similarity=0.639 Sum_probs=430.7
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeEEeeeCCCCc
Q 036921 28 AMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKA 107 (527)
Q Consensus 28 ~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~~~~~~~~ 107 (527)
|||||||||||+|+++|+|++|+++|||+||||||||++++|+++|+++|++++++|++++|++||+|||||++...+++
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~~i~~ir~~~~~~~~~~~i~~Dl~GpkiR~g~~~~~~ 80 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGKRIENVREAAEKLGRPVAILLDTKGPEIRTGEIKGGP 80 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCceeccccCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999997766667
Q ss_pred EEeecCCEEEEeeCC-CCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEeCcEec
Q 036921 108 ISLKADGSVVLTPDC-GQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTATLA 186 (527)
Q Consensus 108 i~l~~G~~v~l~~~~-~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~~G~l~ 186 (527)
+.|++||+|+|+.+. ...++.+.|+++|++|++.+++||.|++| ||+|.|+| .+++++.++|+|++||.|
T Consensus 81 ~~l~~g~~v~l~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~i~id----dG~i~l~V----~~~~~~~~~~~v~~~g~l- 151 (473)
T TIGR01064 81 VKLKKGDKVIITTDDIKGEGDEEDVSVDYKGLTKDVSEGDKILVD----DGKISLVV----VSVEGDKVICEVLNGGTL- 151 (473)
T ss_pred eecCCCCEEEEecccccCCCCCCEEEechHHHHHhcCCCCEEEEe----CCeEEEEE----EEEECCEEEEEEEeCcEE-
Confidence 999999999999874 23577889999999999999999999999 99999999 456789999999999999
Q ss_pred CCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhH
Q 036921 187 GSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHF 266 (527)
Q Consensus 187 ~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nl 266 (527)
+++||||+||..+++|+||++|.+||. |+++.|+|+|++|||++++||+.+++++.+.+. .++.|+|||||++|++|+
T Consensus 152 ~~~kgvn~p~~~~~~~~ltekD~~Dl~-~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~-~~~~Iia~IEt~~av~nl 229 (473)
T TIGR01064 152 KSKKGVNLPGADVDLPALSEKDKKDLK-FGVEQGVDMVAASFVRTAEDVLEVREVLGEKGA-KDVKIIAKIENQEGVDNI 229 (473)
T ss_pred cCCceeecCCCccCCCCCCHHHHHHHH-HHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCC-CCceEEEEECCHHHHHhH
Confidence 999999999999999999999999996 899999999999999999999999999987652 378999999999999999
Q ss_pred HHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEE
Q 036921 267 DEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAIL 345 (527)
Q Consensus 267 deI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~im 345 (527)
+||++++||+|+|||||++++|.++++.+|++|+.+|+++|||+|+ |||||||+.||+|||||++|++|++.+|+|++|
T Consensus 230 ~eI~~~~dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ 309 (473)
T TIGR01064 230 DEIAEASDGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVM 309 (473)
T ss_pred HHHHhhCCcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEE
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred eCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHH
Q 036921 346 LGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAARL 425 (527)
Q Consensus 346 Ls~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~tA~~ 425 (527)
||+||+.|+||+|||++|++||+++|+..+|...|...........+..+++|.+|+++|..++|++|||||.||+||++
T Consensus 310 ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~ 389 (473)
T TIGR01064 310 LSGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARL 389 (473)
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHH
Confidence 99999999999999999999999999876554434322110111235678999999999999999999999999999999
Q ss_pred HHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecCCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCC
Q 036921 426 IAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTNATNESVLKVALDHGKASGVIKSH 505 (527)
Q Consensus 426 is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~~e~~i~~a~~~a~e~g~v~~G 505 (527)
+|||||.|||||+ |+++.++|+|+|+|||+|++++.. ..+.++++..+++++++.|++++|
T Consensus 390 vSr~rp~~PIiAv-------------T~~~~v~R~L~L~wGV~Pil~~~~------~~~~~~~i~~a~~~l~~~gl~~~G 450 (473)
T TIGR01064 390 LSKYRPNAPIIAV-------------TPNERVARQLALYWGVFPFLVDEE------PSDTEARVNKALELLKEKGILKKG 450 (473)
T ss_pred HHhhCCCCCEEEE-------------cCCHHHHHHhhccCCcEEEEeCCC------CCCHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999 789999999999999999988753 146788999999999999999999
Q ss_pred CEEEEEEec------CCCceEEE
Q 036921 506 DRVVVCQKV------GDASVVKI 522 (527)
Q Consensus 506 D~VVvv~g~------g~tn~ikv 522 (527)
|.||+++|+ |+||++||
T Consensus 451 D~VVvv~g~~~~~~~~~~n~i~v 473 (473)
T TIGR01064 451 DLVVVIQGGAPIGGVGGTNTIRV 473 (473)
T ss_pred CEEEEEecCCCCCCCCCCeEEeC
Confidence 999999993 78999885
No 14
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-117 Score=930.78 Aligned_cols=477 Identities=44% Similarity=0.707 Sum_probs=450.1
Q ss_pred CCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCc-eEEEecCCCCeEEee
Q 036921 23 ASFFPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKL-CAVMLDTVGPELQVV 101 (527)
Q Consensus 23 ~~~~~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~-v~i~~Dl~GpkiR~~ 101 (527)
.+...++|||+||+||++++.|+|++|+++|||++|+|||||++++|++.++|+|++.+.++.. ++|++|++||++||+
T Consensus 16 ~~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~tidn~~~a~~~~~~~~~ai~LDtkGpEirtg 95 (501)
T KOG2323|consen 16 APKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQETIDNLRDAISNTGALPCAIMLDTKGPEIRTG 95 (501)
T ss_pred ccccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHHHHHHHHHHHhhcCCcchhhhhccCCCeEeec
Confidence 4457899999999999999999999999999999999999999999999999999999987765 999999999999996
Q ss_pred eCC-CCcEEeecCCEEEEeeCCCCCC-CCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEE
Q 036921 102 NKS-EKAISLKADGSVVLTPDCGQEA-TSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVI 179 (527)
Q Consensus 102 ~~~-~~~i~l~~G~~v~l~~~~~~~~-~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v 179 (527)
..+ +.+++|++|++++||++.+... .++.+++||+++..+|++||.|++| ||.+.+.| .++ ..+.+.|+|
T Consensus 96 ~~~~~~~i~L~~G~~i~~t~d~~~~~~~~~~~~vdyk~~~~~V~~G~~i~vd----dgi~s~~V-~~~---~~~~~~c~v 167 (501)
T KOG2323|consen 96 DLKNGKPIKLKEGQEITITTDYSYEAKLSETISVDYKKLAKDVKPGDIIYVD----DGLISLIV-KSV---SKDEVTCRV 167 (501)
T ss_pred ccCCCCceeecCCCEEEEEcChhhccccceEEEeehHHhhhccccCCEEEEC----CceeeeEE-EEe---ecCceEEEE
Confidence 544 4589999999999999976433 3789999999999999999999999 99999999 544 556999999
Q ss_pred EeCcEecCCCcc-cccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeec
Q 036921 180 KNTATLAGSLFT-LHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIE 258 (527)
Q Consensus 180 ~~~G~l~~~~kg-vnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIE 258 (527)
+|+|.+ +|+|+ +|+||+..++|+||++|.+|++ |++++++|+|++||||.++|++++|++|++.| ++++||+|||
T Consensus 168 ~n~g~l-~s~k~~vnlpg~~vdlp~ltekd~~dl~-fGven~vd~i~~SfIR~a~dv~~iR~~Lg~~g--~~ikiisKIE 243 (501)
T KOG2323|consen 168 ENGGML-GSRKGNVNLPGTHVDLPALTEKDEKDLK-FGVENKVDMIFASFIRKASDVREVRKVLGESG--KNIKLISKIE 243 (501)
T ss_pred ecCccc-ccccCcccCCCccccCCccChhhHHHHh-cCCCCCCCEEEeeeeeehHHHHHHHHHhCccC--CcceEEEEec
Confidence 999999 89999 9999999999999999999996 99999999999999999999999999999888 8999999999
Q ss_pred ChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHH
Q 036921 259 NIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAV 337 (527)
Q Consensus 259 t~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav 337 (527)
+++|+.|+|+|+.++||+||+|||||+|+|+|++|.+||.||.+|+.+|||||+ |||||||+.+|+|||||++||+|||
T Consensus 244 n~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPtRaE~SDVanAV 323 (501)
T KOG2323|consen 244 NQEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPTRAEASDVANAV 323 (501)
T ss_pred hhhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCCccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEEC
Q 036921 338 LDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFT 417 (527)
Q Consensus 338 ~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T 417 (527)
+||+||+|||||||.|+||++||++|++||.+||+.++|..+|+.+....+.|.++.+++|.+|+.+|.+..|.+|+|+|
T Consensus 324 Ldg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~~~~ie~~a~~Av~~a~~~~a~aIvv~T 403 (501)
T KOG2323|consen 324 LDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFPMSTIESLAASAVRAATKCLASAIVVLT 403 (501)
T ss_pred hccCceEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCCCchhHHHHHHHHHHHHhhcceEEEEEe
Confidence 99999999999999999999999999999999999999999999887778889999999999999999999999999999
Q ss_pred CCcHHHHHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecCCCCCCCCCccCHHHHHHHHHHHHH
Q 036921 418 SSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLADPRHPAESTNATNESVLKVALDHGK 497 (527)
Q Consensus 418 ~sG~tA~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~~~~~~~~~~~~~e~~i~~a~~~a~ 497 (527)
++|++|+++|+|||.|||+++ |..++.|||++|||||+|+++.... ...|+++.|+.++++++.++
T Consensus 404 ~sg~~a~lvskyrP~~PIi~v-------------t~~~~~aR~~~l~Rgv~Pvl~~~~~-~~~~~~~~e~~i~~g~~~~k 469 (501)
T KOG2323|consen 404 KSGYTAILVSKYRPSVPIISV-------------TRPVLAARQSHLYRGIIPVLYARSP-VEDWSEDVESRIKFGLDFGK 469 (501)
T ss_pred cCcccHHHHhccCCCCCEEEE-------------eccHHHHHHHHhhccceeeeecccc-hhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999998 6789999999999999999998443 44568999999999999999
Q ss_pred HcCCCCCCCEEEEEEec----CCCceEEEEEe
Q 036921 498 ASGVIKSHDRVVVCQKV----GDASVVKIIEL 525 (527)
Q Consensus 498 e~g~v~~GD~VVvv~g~----g~tn~ikv~~v 525 (527)
+.|+++.||.+|++.++ |.+|++++..+
T Consensus 470 ~~g~~k~gd~~vvv~~~~~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 470 KKGILKKGDVVVVVNKGKGGASVTNTIRVEKV 501 (501)
T ss_pred hcchhhcCCEEEEEecccCCccceeeEEEeeC
Confidence 99999999977777776 78999998753
No 15
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=3.4e-104 Score=824.81 Aligned_cols=342 Identities=43% Similarity=0.689 Sum_probs=307.8
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeEEeeeCCC-
Q 036921 27 PAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSE- 105 (527)
Q Consensus 27 ~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~~~~~~- 105 (527)
+|||||||||||+|+++++|++|+++|||+||||||||++|+|+++++++|+++++++++++|++||+||||||+...+
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~~i~~iR~a~~~~~~~i~IllDl~GPkIRtg~l~~g 80 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKEIIENIREAEKELGKPIAILLDLKGPKIRTGRLKDG 80 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHHHHHHHHHHHHHTTTS-EEEEEE-TS-EBB-BBTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHHHHHHHHHHHhccCCceEEEeccCCCcceeeeeccc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999976654
Q ss_pred -CcEEeecCCEEEEeeCCCC--CCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCe-EEEEEEe
Q 036921 106 -KAISLKADGSVVLTPDCGQ--EATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGND-VTCVIKN 181 (527)
Q Consensus 106 -~~i~l~~G~~v~l~~~~~~--~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~-v~~~v~~ 181 (527)
.++.|++|++|+|+.+... .+++..|++||++|++.|++||+||+| ||++.|+| + +++++. ++|+|.+
T Consensus 81 ~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~Ilid----DG~i~l~V-~---~v~~~~~i~~~v~~ 152 (348)
T PF00224_consen 81 KKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILID----DGKIELEV-T---EVDGDSSIKCEVLN 152 (348)
T ss_dssp SSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEET----TTTEEEEE-E---EEESTEEEEEEESS
T ss_pred cccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEc----CCCcEEEE-E---EEcCCcceeEEeCC
Confidence 4699999999999998753 467889999999999999999999999 99999999 4 557788 9999999
Q ss_pred CcEecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChH
Q 036921 182 TATLAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIE 261 (527)
Q Consensus 182 ~G~l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~ 261 (527)
||.| +++||||+|+.++++|+||++|++||. |++++|+|||++|||++++||.++|++|.+.| .+++|||||||++
T Consensus 153 ~G~L-~~~KgVnlp~~~~~lp~LtekD~~di~-fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~--~~~~iiaKIE~~~ 228 (348)
T PF00224_consen 153 GGKL-KSRKGVNLPGVDLDLPALTEKDKEDIK-FAVENGVDFIALSFVRSAEDVKELRKILGEKG--KDIKIIAKIETKE 228 (348)
T ss_dssp -EEE-ESSEBEEETTS---S-SS-HHHHHHHH-HHHHTT-SEEEETTE-SHHHHHHHHHHHTCTT--TTSEEEEEE-SHH
T ss_pred CCCc-cCCccceecccccccccCCHHHHHHHH-HHHHcCCCEEEecCCCchHHHHHHHHHhhhcC--cccceeeccccHH
Confidence 9999 999999999999999999999999996 99999999999999999999999999999888 8999999999999
Q ss_pred hHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhC
Q 036921 262 GLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDG 340 (527)
Q Consensus 262 av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g 340 (527)
|++||++|+++||||||||||||+|+|++++|.+||+|+++|+++|||||+ |||||||+++|+|||||++||||||+||
T Consensus 229 ~v~nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~dg 308 (348)
T PF00224_consen 229 AVENLDEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLDG 308 (348)
T ss_dssp HHHTHHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHHT
T ss_pred HHhhHHHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhh
Q 036921 341 SDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYF 380 (527)
Q Consensus 341 ~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~ 380 (527)
+||+|||+|||+|+||+|||++|++||++||+.++|...|
T Consensus 309 ~d~vmLs~ETa~G~~p~~~v~~~~~i~~~~E~~~~~~~~~ 348 (348)
T PF00224_consen 309 ADAVMLSGETAIGKYPVEAVKTMARIIREAEKYLDYRNVF 348 (348)
T ss_dssp -SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred CCEEEecCCcCCCCCHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 9999999999999999999999999999999999887654
No 16
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=8e-103 Score=807.31 Aligned_cols=332 Identities=28% Similarity=0.526 Sum_probs=316.9
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeEEeeeCCCCcE
Q 036921 29 MTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKSEKAI 108 (527)
Q Consensus 29 ~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~~~~~~~~i 108 (527)
+++|||||||+|+++|+|++|+++|||+||||||||++|+|.++++++|++.+ +++||+||+||||||+...++++
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~~i~~vR~~~~----~vaIl~Dl~GPkIR~G~~~~~~i 77 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKDIIRLVKSLDD----SIKILGDVQGPKIRLGEIKGEQI 77 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHhhh----hcceeecCCCCcceecccCCCcE
Confidence 68999999999999999999999999999999999999999999999999865 48999999999999987766679
Q ss_pred EeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEeCcEecCC
Q 036921 109 SLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTATLAGS 188 (527)
Q Consensus 109 ~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~~G~l~~~ 188 (527)
.|++|++++|+.+. ..++.+.++++|++|++.+++||.||+| ||+|.|+| .+++++.+.|+|++||.| ++
T Consensus 78 ~l~~G~~v~lt~~~-~~g~~~~i~v~~~~l~~~v~~Gd~Ilid----DG~i~l~V----~~v~~~~v~~~v~~gG~L-~s 147 (352)
T PRK06739 78 TLQAGDSFILHTQP-VTGSSTEASVDYEGIANDVKVGSRILMN----DGEVELIV----EKVSTDKIETKVKTGGNI-SS 147 (352)
T ss_pred EecCCCEEEEecCc-cCCCCCEEecchHHHHhhcCCCCEEEEe----CCEEEEEE----EEEeCCEEEEEEeeCcEE-cC
Confidence 99999999999874 4677889999999999999999999999 99999999 456789999999999999 99
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHH
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDE 268 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nlde 268 (527)
+||||+|+..+++|+||++|++||. |++++|+|||++||||+++||+++|++|.+.|. .+++|||||||++|++||++
T Consensus 148 ~Kgvn~pg~~~~lp~ltekD~~di~-f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~-~~~~IiaKIE~~~av~nl~e 225 (352)
T PRK06739 148 HKGVNLPGAIVRLPAITEKDKKDIQ-FLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKE-TSPNLIAKIETMEAIENFQD 225 (352)
T ss_pred CCCeecccccCCCCCCCHHHHHHHH-HHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHH
Confidence 9999999999999999999999996 999999999999999999999999999998762 57999999999999999999
Q ss_pred HHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 269 ILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 269 I~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
|++++|||||||||||+|+|+++||.+||+||+.|+++|||||+ |||||||++||+|||||++||||||+||+||+|||
T Consensus 226 I~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS 305 (352)
T PRK06739 226 ICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLS 305 (352)
T ss_pred HHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEc
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 348 AETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 348 ~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
+|||+|+||++||++|++||++||++.+.
T Consensus 306 ~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 334 (352)
T PRK06739 306 AESASGEHPIESVSTLRLVSEFAEHVKKD 334 (352)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999976443
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=2.1e-91 Score=754.21 Aligned_cols=337 Identities=26% Similarity=0.420 Sum_probs=314.6
Q ss_pred ccccCCCCCCCCCeEEEEecC-CCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 036921 17 ILEPSKASFFPAMTKIVGTLG-PKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVG 95 (527)
Q Consensus 17 ~~~~~~~~~~~~~tkIi~TiG-p~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~G 95 (527)
++.|.+ ..|+|||||||| |++++++.|++|+++||||||||||||++++|+++|+++|++++++|++|+|++||+|
T Consensus 131 l~G~~~---~~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e~w~~mi~~vR~a~~~~gr~~~I~mDL~G 207 (608)
T PRK14725 131 LLGPPP---SGRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPEAWRAMIANVRTAEEELGRRCRIAMDLAG 207 (608)
T ss_pred hcCCCC---CCCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 445544 458999999999 6999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeeeCCCC---------------------------------------------------------------------
Q 036921 96 PELQVVNKSEK--------------------------------------------------------------------- 106 (527)
Q Consensus 96 pkiR~~~~~~~--------------------------------------------------------------------- 106 (527)
|||||+...++
T Consensus 208 PKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~l~~Gd~i~~~DaRg~~R~l 287 (608)
T PRK14725 208 PKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSPPPGPVGLPVDPEWLARLEPGDELRFTDARGKKRKL 287 (608)
T ss_pred CcceEEecCCCccccccccccccccccccchhheeecccCCCCCCCccccccccChhhhhhcCCCceeeeeeccccceee
Confidence 99999654332
Q ss_pred --------------------------------------------cEEeecCCEEEEeeCCCC----CCCCc--EEeeccc
Q 036921 107 --------------------------------------------AISLKADGSVVLTPDCGQ----EATSQ--VLPINFD 136 (527)
Q Consensus 107 --------------------------------------------~i~l~~G~~v~l~~~~~~----~~~~~--~i~v~~~ 136 (527)
.+.|++||+++|+.+... .++.. .|+|+|+
T Consensus 288 ~V~~~~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~i~L~~Gd~l~lt~~~~~~~~~~~~~~~~~i~~t~p 367 (608)
T PRK14725 288 TVTEVDDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQKLRLKVGDRLVLTRDDAPGDPAQGDAPPARISCTLP 367 (608)
T ss_pred eEEeecCceeEEeecceeeeccCceeeeccccccccccccccCcceEecCCCEEEEecCCcCCccccCCCCccEEEechH
Confidence 589999999999987421 12345 8999999
Q ss_pred hhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEe----CcEecCCCcccccCCccccCCCCCHhhHHHH
Q 036921 137 GLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKN----TATLAGSLFTLHASQIRIELPTLSDKDKEVI 212 (527)
Q Consensus 137 ~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~----~G~l~~~~kgvnlp~~~~~lp~lt~~D~~di 212 (527)
++++.+++||.|++| ||+|.++| .+++++.+.|+|++ ||.| +++||||+|+..+++|+||+||++||
T Consensus 368 ~l~~~v~~G~~Vlid----DG~I~l~V----~~~~~~~v~~~V~~a~~~gg~L-~s~KGiNlP~~~l~lp~LTekD~~dl 438 (608)
T PRK14725 368 EAFRAARVGERVWFD----DGKIGAVV----VKVEADEVELRITHARPGGSKL-KAGKGINLPDSHLPLPALTDKDLEDL 438 (608)
T ss_pred HHHHhcCCCCEEEEe----CCeEEEEE----EEEECCEEEEEEEEecCCCCEe-cCCCceecCCCCCCCCCCCHHHHHHH
Confidence 999999999999999 99999999 45678999999999 9999 99999999999999999999999999
Q ss_pred HhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhC-----CEEEEeCCCCcCCC
Q 036921 213 SSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAA-----DGIILSRGNLGIDL 287 (527)
Q Consensus 213 ~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~s-----DgImIaRgDLg~e~ 287 (527)
. |++++ +|+|++|||++++||+++|++|.+.|. .++.|||||||++|++||++|+.++ |||||||||||+|+
T Consensus 439 ~-f~~~~-vD~ValSFVrs~~DV~~lr~~L~~~g~-~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi 515 (608)
T PRK14725 439 A-FVAKH-ADIVALSFVRSPEDVRLLLDALEKLGA-DDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEV 515 (608)
T ss_pred H-HHHHh-CCEEEECCCCCHHHHHHHHHHHHHcCC-CCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCcccccc
Confidence 6 99999 999999999999999999999998763 5799999999999999999999987 99999999999999
Q ss_pred CchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHH
Q 036921 288 PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKI 366 (527)
Q Consensus 288 ~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i 366 (527)
|++++|.+||+||++|+++|||||+ |||||||++||+|||||++|||||+ |+||+||| +|+||+|||++|++|
T Consensus 516 ~~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l~~I 589 (608)
T PRK14725 516 GFERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLDDI 589 (608)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHHHHH
Confidence 9999999999999999999999999 9999999999999999999999999 99999999 999999999999999
Q ss_pred HHHHhhcc
Q 036921 367 CAEAEKVF 374 (527)
Q Consensus 367 ~~~aE~~~ 374 (527)
|+++|++.
T Consensus 590 ~~r~e~~~ 597 (608)
T PRK14725 590 LRRMEEHQ 597 (608)
T ss_pred HHHHHHhh
Confidence 99999764
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=5.8e-89 Score=731.03 Aligned_cols=337 Identities=20% Similarity=0.360 Sum_probs=312.5
Q ss_pred ccccCCCCCCCCCeEEEEec-CCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 036921 17 ILEPSKASFFPAMTKIVGTL-GPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVG 95 (527)
Q Consensus 17 ~~~~~~~~~~~~~tkIi~Ti-Gp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~G 95 (527)
++.|.+ ..|+||||||| ||+++++|+|++|+++||||||||||||++++|+++|+++|++++++|++|+|++||+|
T Consensus 125 l~g~~~---~~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~~~~g~~i~Il~DL~G 201 (493)
T PRK08187 125 LFGPRP---AARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPAAWQAMIGHLRQAERATGRRCKILMDLAG 201 (493)
T ss_pred HcCCCc---CCCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 344444 34899999999 49999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeeeCCC--CcEEeecCCEEEEeeCCCCC---CCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEe
Q 036921 96 PELQVVNKSE--KAISLKADGSVVLTPDCGQE---ATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEV 170 (527)
Q Consensus 96 pkiR~~~~~~--~~i~l~~G~~v~l~~~~~~~---~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~ 170 (527)
|||||+...+ +++.|++||+|+|+.+.... ++...|+++|+++++.+++||+|++| ||+|.++| .++
T Consensus 202 PKIRtG~l~~~~~~~~l~~Gd~i~l~~~~~~~~~~~~~~~i~~~~~~l~~~v~~Gd~Ilid----DG~I~l~V----~~v 273 (493)
T PRK08187 202 PKIRTGAVAGPLGKTRLYTGDRLALVAQGPPRRIDEEHFQVTCTLPEILARLAVGARVWID----DGKLGARV----ERV 273 (493)
T ss_pred CceeecccCCCCccEEecCCCEEEEeccccccCCCCCccEEEechHHHHHhcCCCCEEEEe----CCeEEEEE----EEE
Confidence 9999976543 35999999999999875322 24578999999999999999999999 99999999 456
Q ss_pred eCCeEEEEEE----eCcEecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcC
Q 036921 171 KGNDVTCVIK----NTATLAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLG 246 (527)
Q Consensus 171 ~~~~v~~~v~----~~G~l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~ 246 (527)
+++.+.|+|+ +||.| +++||||+|+..+.+|.+|++|++||. |+++ ++|+|++|||+|++||..++++|.+.+
T Consensus 274 ~~~~v~~~V~~~~~~gg~L-~~~KgiNlP~~~vrin~LtekD~~DL~-f~~~-~vD~I~lSfV~saeDV~~l~~~L~~~~ 350 (493)
T PRK08187 274 GPGGALLEVTHARPKGLKL-KPEKGLNFPDTALDLPALTEKDRADLD-FVAR-HADLVGYSFVQSPGDVEALQAALAARR 350 (493)
T ss_pred eCCEEEEEEEEecCCCeEe-cCCCcccccCceecCCCCCHhHHHHHH-HHHh-cCCEEEECCCCCHHHHHHHHHHHHHhC
Confidence 7899999999 99999 999999999999999999999999996 8888 699999999999999999999998754
Q ss_pred C--CCCceEEEeecChHhHhhHHHHHHhCC-----EEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhh
Q 036921 247 D--LSQTQIFAKIENIEGLTHFDEILQAAD-----GIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDS 318 (527)
Q Consensus 247 ~--~~~~~IiaKIEt~~av~nldeI~~~sD-----gImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeS 318 (527)
. ..++.|||||||++|++|+++|+.++| ||||||||||+|+|++++|.+|++|+.+|+++|||+|+ ||||||
T Consensus 351 ~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLES 430 (493)
T PRK08187 351 PDDWRKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEG 430 (493)
T ss_pred CCCCCCCeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHh
Confidence 1 147899999999999999999999888 99999999999999999999999999999999999999 999999
Q ss_pred hhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhc
Q 036921 319 MTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKV 373 (527)
Q Consensus 319 M~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~ 373 (527)
|++||+|||||++||||+ ||+||+||| +|+||+|||++|++||.++|++
T Consensus 431 M~~~p~PTRAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~ 479 (493)
T PRK08187 431 LVKKGLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGH 479 (493)
T ss_pred hccCCCCchHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998 999999999 9999999999999999999976
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.94 E-value=1.3e-26 Score=206.10 Aligned_cols=112 Identities=36% Similarity=0.609 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecC
Q 036921 394 LESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLAD 473 (527)
Q Consensus 394 ~~~ia~~av~~a~~~~a~~Ivv~T~sG~tA~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~ 473 (527)
+|+++.+|+++|.+++|++|+|+|.||+||+++|||||.|||||+ |++++++|||+|+|||+|++++
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiav-------------t~~~~~~r~l~l~~GV~p~~~~ 67 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAV-------------TPNESVARQLSLYWGVYPVLIE 67 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEE-------------ESSHHHHHHGGGSTTEEEEECS
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEE-------------cCcHHHHhhhhcccceEEEEec
Confidence 479999999999999999999999999999999999999999999 6899999999999999999887
Q ss_pred CCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEec-----CCCceEEEEE
Q 036921 474 PRHPAESTNATNESVLKVALDHGKASGVIKSHDRVVVCQKV-----GDASVVKIIE 524 (527)
Q Consensus 474 ~~~~~~~~~~~~e~~i~~a~~~a~e~g~v~~GD~VVvv~g~-----g~tn~ikv~~ 524 (527)
... .+.+++++.++++++++|++++||.||+++|. |+||++||+.
T Consensus 68 ~~~------~~~~~~~~~a~~~~~~~g~~~~gd~vVv~~g~~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 68 EFD------KDTEELIAEALEYAKERGLLKPGDKVVVVAGMPFGTPGGTNTIRVVR 117 (117)
T ss_dssp SHS------HSHHHHHHHHHHHHHHTTSS-TTSEEEEEEESSTTTTSSEEEEEEEE
T ss_pred ccc------ccHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEC
Confidence 662 37999999999999999999999999999994 8999999974
No 20
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.63 E-value=8.8e-16 Score=153.73 Aligned_cols=132 Identities=17% Similarity=0.233 Sum_probs=111.6
Q ss_pred CCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHH--------------------------HHcCCCCCceEEEe
Q 036921 203 TLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYL--------------------------SKLGDLSQTQIFAK 256 (527)
Q Consensus 203 ~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l--------------------------~~~~~~~~~~IiaK 256 (527)
.++..|...|+ .++|.|+++|++|+|+|++|++++.+.. ...+ +++.++++
T Consensus 68 Rvp~~~~~~i~-r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n--~~~~vi~~ 144 (249)
T TIGR03239 68 RPPWNEPVIIK-RLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATIN--DNITVLVQ 144 (249)
T ss_pred ECCCCCHHHHH-HHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhc--cccEEEEE
Confidence 34556778886 6899999999999999999999997543 3333 67899999
Q ss_pred ecChHhHhhHHHHHHh--CCEEEEeCCCCcCCCCc------hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCCh
Q 036921 257 IENIEGLTHFDEILQA--ADGIILSRGNLGIDLPP------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTR 327 (527)
Q Consensus 257 IEt~~av~nldeI~~~--sDgImIaRgDLg~e~~~------~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~Ptr 327 (527)
|||++|++|+++|+++ .|++++|++||+.+++. +++..+..+++.+|+++|||+++ .. .|
T Consensus 145 IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~~---------~~-- 213 (249)
T TIGR03239 145 IESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILAP---------VE-- 213 (249)
T ss_pred ECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcCC---------CH--
Confidence 9999999999999988 49999999999999986 37888889999999999999986 32 22
Q ss_pred HhhhhHHHHHHhCCcEEEeCCccc
Q 036921 328 AEATDVANAVLDGSDAILLGAETL 351 (527)
Q Consensus 328 aEv~Dv~nav~~g~D~imLs~Eta 351 (527)
.+...++..|++.++++.|+.
T Consensus 214 ---~~~~~~~~~G~~~~~~~~D~~ 234 (249)
T TIGR03239 214 ---ADARRYLEWGATFVAVGSDLG 234 (249)
T ss_pred ---HHHHHHHHcCCCEEEEhHHHH
Confidence 355778899999999998865
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.62 E-value=1.1e-15 Score=153.71 Aligned_cols=133 Identities=17% Similarity=0.276 Sum_probs=111.7
Q ss_pred CCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHH--------------------------HHcCCCCCceEEE
Q 036921 202 PTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYL--------------------------SKLGDLSQTQIFA 255 (527)
Q Consensus 202 p~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l--------------------------~~~~~~~~~~Iia 255 (527)
-.++..|...|+ .++|.|+++|++|+|+|++|++++.+.. ...+ .++.+++
T Consensus 74 VRvp~~~~~~i~-r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an--~~~~vi~ 150 (256)
T PRK10558 74 VRVPTNEPVIIK-RLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSN--KNITVLV 150 (256)
T ss_pred EECCCCCHHHHH-HHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhc--cccEEEE
Confidence 345666788886 6899999999999999999999986643 3333 6789999
Q ss_pred eecChHhHhhHHHHHHh--CCEEEEeCCCCcCCCCc------hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCC
Q 036921 256 KIENIEGLTHFDEILQA--ADGIILSRGNLGIDLPP------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPT 326 (527)
Q Consensus 256 KIEt~~av~nldeI~~~--sDgImIaRgDLg~e~~~------~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~Pt 326 (527)
+|||++|++|+++|+++ .|++++|++||+.+++. +++..+..+++.+|+++|||+++ . ++
T Consensus 151 ~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~~-----------~~ 219 (256)
T PRK10558 151 QIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGILA-----------PV 219 (256)
T ss_pred EECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEcC-----------CC
Confidence 99999999999999987 48999999999999986 37888889999999999999986 2 22
Q ss_pred hHhhhhHHHHHHhCCcEEEeCCccc
Q 036921 327 RAEATDVANAVLDGSDAILLGAETL 351 (527)
Q Consensus 327 raEv~Dv~nav~~g~D~imLs~Eta 351 (527)
- .+...++..|++.++++.|+.
T Consensus 220 ~---~~~~~~~~~G~~~v~~~~D~~ 241 (256)
T PRK10558 220 E---ADARRYLEWGATFVAVGSDLG 241 (256)
T ss_pred H---HHHHHHHHcCCCEEEEchHHH
Confidence 2 345778889999999998865
No 22
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.59 E-value=3.8e-15 Score=150.29 Aligned_cols=133 Identities=20% Similarity=0.282 Sum_probs=110.8
Q ss_pred CCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHH-----HcC--------------------CCCCceEEEeec
Q 036921 204 LSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLS-----KLG--------------------DLSQTQIFAKIE 258 (527)
Q Consensus 204 lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~-----~~~--------------------~~~~~~IiaKIE 258 (527)
+...|...|+ .++|.|+++|++|+|+|+++++++.+..+ .+| .+.++.++++||
T Consensus 75 vp~~~~~~i~-r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiE 153 (267)
T PRK10128 75 PVEGSKPLIK-QVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVE 153 (267)
T ss_pred CCCCCHHHHH-HHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEEC
Confidence 3445667785 68999999999999999999999987642 111 026789999999
Q ss_pred ChHhHhhHHHHHHhC--CEEEEeCCCCcCCCCc------hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHh
Q 036921 259 NIEGLTHFDEILQAA--DGIILSRGNLGIDLPP------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAE 329 (527)
Q Consensus 259 t~~av~nldeI~~~s--DgImIaRgDLg~e~~~------~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraE 329 (527)
|++|++|+++|+++. |++++|++||+.+++. +++..+.++++++|+++|||+++ .. .|
T Consensus 154 t~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~~---------~~---- 220 (267)
T PRK10128 154 SKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAV---------DP---- 220 (267)
T ss_pred CHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcCC---------CH----
Confidence 999999999999985 9999999999999986 57888889999999999999986 32 22
Q ss_pred hhhHHHHHHhCCcEEEeCCccc
Q 036921 330 ATDVANAVLDGSDAILLGAETL 351 (527)
Q Consensus 330 v~Dv~nav~~g~D~imLs~Eta 351 (527)
.+...++..|++.+.++.|+.
T Consensus 221 -~~a~~~~~~G~~~v~~g~D~~ 241 (267)
T PRK10128 221 -DMAQKCLAWGANFVAVGVDTM 241 (267)
T ss_pred -HHHHHHHHcCCcEEEEChHHH
Confidence 445778889999999998864
No 23
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=2e-14 Score=139.50 Aligned_cols=134 Identities=22% Similarity=0.273 Sum_probs=113.9
Q ss_pred CCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHH---------------------------HHHcCCCCCceE
Q 036921 201 LPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREY---------------------------LSKLGDLSQTQI 253 (527)
Q Consensus 201 lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~---------------------------l~~~~~~~~~~I 253 (527)
+-.++..+...|+ ..+|.|+..+.+|||+|+|+.+++.+. +...+ +++.+
T Consensus 71 vVR~p~g~~~~Ik-q~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An--~~~~~ 147 (255)
T COG3836 71 VVRPPVGDPVMIK-QLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQAN--DEICL 147 (255)
T ss_pred eeeCCCCCHHHHH-HHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcc--cceEE
Confidence 3345566778886 579999999999999999999999764 33344 88999
Q ss_pred EEeecChHhHhhHHHHHHhC--CEEEEeCCCCcCCCCc------hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCC
Q 036921 254 FAKIENIEGLTHFDEILQAA--DGIILSRGNLGIDLPP------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLR 324 (527)
Q Consensus 254 iaKIEt~~av~nldeI~~~s--DgImIaRgDLg~e~~~------~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~ 324 (527)
++||||++|++|||+|+++. |||+||++||+.++|. ++|..+.+.++.+.+++||..++ +- .
T Consensus 148 lvqiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil~~---------~ 218 (255)
T COG3836 148 LVQIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGILAA---------D 218 (255)
T ss_pred EEEEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCccccccC---------C
Confidence 99999999999999999996 9999999999999987 47777778999999999999987 53 3
Q ss_pred CChHhhhhHHHHHHhCCcEEEeCCccc
Q 036921 325 PTRAEATDVANAVLDGSDAILLGAETL 351 (527)
Q Consensus 325 PtraEv~Dv~nav~~g~D~imLs~Eta 351 (527)
| .+...++..|+..+.+..+|.
T Consensus 219 p-----~~a~~yl~lGa~fvavG~D~~ 240 (255)
T COG3836 219 P-----ADARRYLALGATFVAVGSDTG 240 (255)
T ss_pred H-----HHHHHHHHhCCeEEEEeccHH
Confidence 3 345888899999999998874
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.52 E-value=3e-14 Score=142.77 Aligned_cols=132 Identities=20% Similarity=0.205 Sum_probs=108.4
Q ss_pred CHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHc-----CC--------------------CCCceEEEeecC
Q 036921 205 SDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKL-----GD--------------------LSQTQIFAKIEN 259 (527)
Q Consensus 205 t~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~-----~~--------------------~~~~~IiaKIEt 259 (527)
+..|..+|. .+++.|+|+|++|+|+|++|++++.+.++.. |. +.++.++++|||
T Consensus 70 ~~~~~~~i~-~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt 148 (249)
T TIGR02311 70 AIGDPVLIK-QLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVET 148 (249)
T ss_pred CCCCHHHHH-HHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecC
Confidence 334455786 6899999999999999999999999987521 10 125789999999
Q ss_pred hHhHhhHHHHHHhC--CEEEEeCCCCcCCCCc------hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhh
Q 036921 260 IEGLTHFDEILQAA--DGIILSRGNLGIDLPP------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEA 330 (527)
Q Consensus 260 ~~av~nldeI~~~s--DgImIaRgDLg~e~~~------~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv 330 (527)
++|++|+++|+++. |++++|++||+.++|. +++..+.+++..+|+.+||+.++ .. .|
T Consensus 149 ~~av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~~---------~~----- 214 (249)
T TIGR02311 149 REALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILTA---------DP----- 214 (249)
T ss_pred HHHHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecCC---------CH-----
Confidence 99999999999875 8999999999999996 36667788899999999999996 32 12
Q ss_pred hhHHHHHHhCCcEEEeCCccc
Q 036921 331 TDVANAVLDGSDAILLGAETL 351 (527)
Q Consensus 331 ~Dv~nav~~g~D~imLs~Eta 351 (527)
.+...++..|++.++++.|+.
T Consensus 215 ~~~~~~~~~G~~~~~~~~D~~ 235 (249)
T TIGR02311 215 KLARQYLKLGALFVAVGVDTT 235 (249)
T ss_pred HHHHHHHHcCCCEEEEchHHH
Confidence 344677889999999998864
No 25
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.43 E-value=9e-14 Score=136.71 Aligned_cols=104 Identities=26% Similarity=0.328 Sum_probs=85.6
Q ss_pred hhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcC-----CCCCceEEEeecChHhHhhHHHHHHhC--CEEEEe
Q 036921 207 KDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLG-----DLSQTQIFAKIENIEGLTHFDEILQAA--DGIILS 279 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~-----~~~~~~IiaKIEt~~av~nldeI~~~s--DgImIa 279 (527)
.-.+||. +++.|+|+|++|+|+|++|++++.+++.... .+.++.++++|||++||+|+++|++.. |++++|
T Consensus 73 ~~~~Dl~--~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G 150 (221)
T PF03328_consen 73 HIERDLE--ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFG 150 (221)
T ss_dssp HHHHHHH--HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-
T ss_pred hhhhhhh--hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeC
Confidence 3355664 6899999999999999999999999987541 014689999999999999999999654 899999
Q ss_pred CCCCcCCCCch------hHHHHHHHHHHHHHHcCCcEEE
Q 036921 280 RGNLGIDLPPE------KVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 280 RgDLg~e~~~~------~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
++||+.++|.. ++..+.++++.+|+++|||++.
T Consensus 151 ~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~ 189 (221)
T PF03328_consen 151 PADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAID 189 (221)
T ss_dssp HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred cHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEE
Confidence 99999999873 6889999999999999997765
No 26
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.26 E-value=3.2e-11 Score=138.46 Aligned_cols=151 Identities=18% Similarity=0.170 Sum_probs=119.5
Q ss_pred CCCCHhhHHHHHhhcc-cccccE--EEecCCCCHHHHHHHHHHHHHcCC---CCCceEEEeecChHhHhhHHHHHHhCCE
Q 036921 202 PTLSDKDKEVISSWGV-QNKIDF--LSLSYTRHAEDVRQAREYLSKLGD---LSQTQIFAKIENIEGLTHFDEILQAADG 275 (527)
Q Consensus 202 p~lt~~D~~di~~~~~-~~g~d~--I~~sfV~s~~dv~~lr~~l~~~~~---~~~~~IiaKIEt~~av~nldeI~~~sDg 275 (527)
|.+-....+.|. .++ +.|+.. |++|||+|+++++++++.+...+. +.++.++++||+++|+.|+|+|+++.|+
T Consensus 609 ~~lf~~qlraI~-ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDf 687 (782)
T TIGR01418 609 EEAFRLECRAIK-RVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDG 687 (782)
T ss_pred HHHHHHHHHHHH-HHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCE
Confidence 445566778886 567 889988 999999999999999999876542 1348999999999999999999999999
Q ss_pred EEEeCCCCcC-CCCc---------------hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHH
Q 036921 276 IILSRGNLGI-DLPP---------------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVL 338 (527)
Q Consensus 276 ImIaRgDLg~-e~~~---------------~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~ 338 (527)
++||++||+. .++. +.|..+.++++++|+++|||+.+ .++- .. .-..+...+.
T Consensus 688 isIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~---------~~-~p~~~~~l~~ 757 (782)
T TIGR01418 688 FSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAP---------SD-YPEVVEFLVE 757 (782)
T ss_pred EEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCC---------CC-CHHHHHHHHH
Confidence 9999999996 4432 57888899999999999999998 6531 00 1133466778
Q ss_pred hCCcEEEeCCccccCCChHHHHHHHHHHHHHHhh
Q 036921 339 DGSDAILLGAETLRGLYPVETISIVGKICAEAEK 372 (527)
Q Consensus 339 ~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~ 372 (527)
.|++.+.++.++ +..++..++++|+
T Consensus 758 ~G~~~ls~~~d~---------~~~~k~~i~~~e~ 782 (782)
T TIGR01418 758 EGIDSISLNPDA---------VLRTRLQVAEVEK 782 (782)
T ss_pred cCCCEEEECcch---------HHHHHHHHHHhcC
Confidence 899999998654 4556666666664
No 27
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.22 E-value=8e-11 Score=135.20 Aligned_cols=150 Identities=19% Similarity=0.155 Sum_probs=119.6
Q ss_pred CCCHhhHHHHHhhccc-ccccE--EEecCCCCHHHHHHHHHHHHHcCC---CCCceEEEeecChHhHhhHHHHHHhCCEE
Q 036921 203 TLSDKDKEVISSWGVQ-NKIDF--LSLSYTRHAEDVRQAREYLSKLGD---LSQTQIFAKIENIEGLTHFDEILQAADGI 276 (527)
Q Consensus 203 ~lt~~D~~di~~~~~~-~g~d~--I~~sfV~s~~dv~~lr~~l~~~~~---~~~~~IiaKIEt~~av~nldeI~~~sDgI 276 (527)
.+-+...+.|. .+++ .|++. |++|||+|+++++++++.++..|. +.+++++++||+++|+.|+|+|+++.|++
T Consensus 617 ~lf~~qlraI~-rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi 695 (795)
T PRK06464 617 EAFALECEAIK-RVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGF 695 (795)
T ss_pred HHHHHHHHHHH-HHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEE
Confidence 34456778886 6788 79888 999999999999999999876642 13789999999999999999999999999
Q ss_pred EEeCCCCcC-CCCc---------------hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCC-CChHhhhhHHHHHH
Q 036921 277 ILSRGNLGI-DLPP---------------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLR-PTRAEATDVANAVL 338 (527)
Q Consensus 277 mIaRgDLg~-e~~~---------------~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~-PtraEv~Dv~nav~ 338 (527)
+||++||+. .++. +.+..+.++++++|+++|||+.+ .++.. . | ..+...+.
T Consensus 696 ~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~------~~p-----~~~~~l~~ 764 (795)
T PRK06464 696 SIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPS------DHP-----DFAEWLVE 764 (795)
T ss_pred EECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCC------CcH-----HHHHHHHH
Confidence 999999996 3432 57888889999999999999998 76421 1 2 22356677
Q ss_pred hCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhc
Q 036921 339 DGSDAILLGAETLRGLYPVETISIVGKICAEAEKV 373 (527)
Q Consensus 339 ~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~ 373 (527)
.|++.+.++.+ ++-.++..++++|+.
T Consensus 765 ~G~~~ls~~~d---------~~~~~k~~i~~~~~~ 790 (795)
T PRK06464 765 EGIDSISLNPD---------AVVDTWLAVAEVEKK 790 (795)
T ss_pred CCCCEEEEcch---------hHHHHHHHHHHhHHH
Confidence 89999999855 455566667776654
No 28
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.18 E-value=6.4e-11 Score=121.28 Aligned_cols=134 Identities=24% Similarity=0.255 Sum_probs=102.8
Q ss_pred CHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHc----CC-CCCceEEEeecChHhHhhHHHHHHhC---CEE
Q 036921 205 SDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKL----GD-LSQTQIFAKIENIEGLTHFDEILQAA---DGI 276 (527)
Q Consensus 205 t~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~----~~-~~~~~IiaKIEt~~av~nldeI~~~s---DgI 276 (527)
|+....||. ..++.|+++|++|+|+|++|++.+.+++... +. +.++.+++.|||++|+.|+++|+..+ ||+
T Consensus 71 ~~~~~~di~-~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l 149 (288)
T TIGR01588 71 TPFGLADIK-AVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGI 149 (288)
T ss_pred ChhHHHHHH-HHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEE
Confidence 445567786 5689999999999999999999999887642 11 14688999999999999999999654 799
Q ss_pred EEeCCCCcCCCCch------hHHHHHHHHHHHHHHcCCcEEE--ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEe
Q 036921 277 ILSRGNLGIDLPPE------KVFLFQKAALYKCNMAGKPAVV--TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (527)
Q Consensus 277 mIaRgDLg~e~~~~------~v~~~qk~Ii~~c~~~gKpvi~--Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imL 346 (527)
++|+.||+.++|.. ++.++..+++.+|+++|+|+|. ++=+. +. ..=..+..++-..|++|=+.
T Consensus 150 ~~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id~v~~~~~----d~---~~l~~~~~~~~~~Gf~Gk~~ 220 (288)
T TIGR01588 150 ALGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFDTVYSDVN----NE---EGFLAEAQLIKQLGFDGKSL 220 (288)
T ss_pred EeCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcccCCccCcC----CH---HHHHHHHHHHHHcCCCceec
Confidence 99999999999863 6888999999999999999875 22111 00 01114455577778877544
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.08 E-value=1.2e-09 Score=121.45 Aligned_cols=135 Identities=11% Similarity=0.055 Sum_probs=109.6
Q ss_pred CCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHc-------C--CCCCceEEEeecChHhHhhHHHHHH
Q 036921 201 LPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKL-------G--DLSQTQIFAKIENIEGLTHFDEILQ 271 (527)
Q Consensus 201 lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~-------~--~~~~~~IiaKIEt~~av~nldeI~~ 271 (527)
-|.+-....+.|. .+++.|...|++|||+|+++++++++++... + .+.++.+.++||++.|+.|+|+|++
T Consensus 365 ~~~lf~~QlrAI~-ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~ 443 (565)
T TIGR01417 365 REEILRTQLRAIL-RASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAK 443 (565)
T ss_pred CHHHHHHHHHHHH-HHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHh
Confidence 3455566677886 6799999999999999999999999887641 1 1257899999999999999999999
Q ss_pred hCCEEEEeCCCCcC-----C-----CCc------hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHH
Q 036921 272 AADGIILSRGNLGI-----D-----LPP------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVA 334 (527)
Q Consensus 272 ~sDgImIaRgDLg~-----e-----~~~------~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~ 334 (527)
..|+++||+.||+. + ++. +.|..+.++++++|+++|||+.+ .+|- .+ . ..+.
T Consensus 444 ~vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a--------~~-p--~~~~ 512 (565)
T TIGR01417 444 EVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMA--------GD-E--RAIP 512 (565)
T ss_pred hCCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcC--------CC-H--HHHH
Confidence 99999999999987 2 442 57888999999999999999998 5431 11 1 3456
Q ss_pred HHHHhCCcEEEeC
Q 036921 335 NAVLDGSDAILLG 347 (527)
Q Consensus 335 nav~~g~D~imLs 347 (527)
..+..|++.+.++
T Consensus 513 ~l~~~G~~~lsv~ 525 (565)
T TIGR01417 513 LLLGLGLRELSMS 525 (565)
T ss_pred HHHHCCCCEEEEC
Confidence 7788899998887
No 30
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=98.93 E-value=3.7e-09 Score=117.53 Aligned_cols=135 Identities=12% Similarity=0.035 Sum_probs=108.6
Q ss_pred CCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHc-------C--CCCCceEEEeecChHhHhhHHHHHH
Q 036921 201 LPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKL-------G--DLSQTQIFAKIENIEGLTHFDEILQ 271 (527)
Q Consensus 201 lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~-------~--~~~~~~IiaKIEt~~av~nldeI~~ 271 (527)
-|.+-...++.|. .+.+.|...|++|||.|+++++++++++... + .+.++.+.++||++.|+.|+|+|++
T Consensus 366 ~~~~f~~QlrAil-ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~ 444 (575)
T PRK11177 366 RKEILHDQLRAIL-RASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAK 444 (575)
T ss_pred CHHHHHHHHHHHH-HHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHh
Confidence 3455566777786 6789999999999999999999999877531 1 1256899999999999999999999
Q ss_pred hCCEEEEeCCCCcCCC-----C-----------chhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHH
Q 036921 272 AADGIILSRGNLGIDL-----P-----------PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVA 334 (527)
Q Consensus 272 ~sDgImIaRgDLg~e~-----~-----------~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~ 334 (527)
..|++.||++||+.-+ + -+.+..+.++++++|+++|||+.+ .+|= . .|.. +.
T Consensus 445 ~vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A----~--dp~~-----~~ 513 (575)
T PRK11177 445 EVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELA----G--DERA-----TL 513 (575)
T ss_pred hCCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCC----C--CHHH-----HH
Confidence 9999999999999822 1 157888899999999999999999 7742 2 2322 34
Q ss_pred HHHHhCCcEEEeC
Q 036921 335 NAVLDGSDAILLG 347 (527)
Q Consensus 335 nav~~g~D~imLs 347 (527)
-.+..|.|-+-++
T Consensus 514 lLlglGi~~lSm~ 526 (575)
T PRK11177 514 LLLGMGLDEFSMS 526 (575)
T ss_pred HHHHCCCCeEEEC
Confidence 5777899998777
No 31
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.73 E-value=2.8e-07 Score=100.31 Aligned_cols=254 Identities=15% Similarity=0.166 Sum_probs=157.3
Q ss_pred cccCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCe
Q 036921 18 LEPSKASFFPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPE 97 (527)
Q Consensus 18 ~~~~~~~~~~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gpk 97 (527)
..|.|+..+.||+-| | ||.+ ..++.+.+.+|++++=++|--+..-.|+..|+--....+.....+.. -+-.
T Consensus 57 va~~p~~l~~RRvei--t-gP~~--~km~~nAlnsgAd~~m~D~EDa~aPtwkn~i~gq~nl~~al~~~i~~-~~~~--- 127 (511)
T cd00727 57 VAPVPPDLQDRRVEI--T-GPVD--RKMVINALNSGAKVFMADFEDANAPTWENQVEGQINLRDAVRGTISF-TSPE--- 127 (511)
T ss_pred cCCCChhhcCceeEE--e-CCCC--HHHHHHHhcCCCCEEEeCcccCCCCChHHHHHHHHHHHHHhcCCCCc-cCCC---
Confidence 347788888898887 3 7976 89999999999999999999999888877755443333322211100 0101
Q ss_pred EEeeeCCCCcEEeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEE
Q 036921 98 LQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTC 177 (527)
Q Consensus 98 iR~~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~ 177 (527)
++.+.|+++-.+.+....+ +..++. .|++| |.
T Consensus 128 -------gk~y~l~~~~~~l~VRprG-------~hl~e~----------hv~~d-----g~------------------- 159 (511)
T cd00727 128 -------GKEYKLNDTPATLIVRPRG-------WHLPEK----------HVLVD-----GE------------------- 159 (511)
T ss_pred -------CceeeeCCCCcEEEEecCC-------CCCCcc----------hhhcC-----Cc-------------------
Confidence 1223332222222221111 111111 11111 21
Q ss_pred EEEeCcEecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHc----CCC-CCce
Q 036921 178 VIKNTATLAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKL----GDL-SQTQ 252 (527)
Q Consensus 178 ~v~~~G~l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~----~~~-~~~~ 252 (527)
-+|+.-++.--+--+|.+.+.. ...|+ +|.+|++++++|++.+.+++... |.. ..++
T Consensus 160 ---------------~~~~~l~Dfgl~~fhd~~~l~~--~g~gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIk 221 (511)
T cd00727 160 ---------------PVSGSLFDFGLYFFHNAKALLA--RGSGP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIK 221 (511)
T ss_pred ---------------cCcchhhhHHHHHHhhHHHHHh--cCCCc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Confidence 1223333332222244444432 12458 99999999999999999888633 321 4688
Q ss_pred EEEeecChHhHhhHHHHHHhC----CEEEEeCCCCcCCCC----c-------h--------hHHHH-HHHHHHHHHHcCC
Q 036921 253 IFAKIENIEGLTHFDEILQAA----DGIILSRGNLGIDLP----P-------E--------KVFLF-QKAALYKCNMAGK 308 (527)
Q Consensus 253 IiaKIEt~~av~nldeI~~~s----DgImIaRgDLg~e~~----~-------~--------~v~~~-qk~Ii~~c~~~gK 308 (527)
+.+.|||+.|+-|++||+..+ -|+..||.|+..++. . + .+..+ ++.++.+|+++|+
T Consensus 222 i~vLIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~ 301 (511)
T cd00727 222 ATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGA 301 (511)
T ss_pred EEEEecCHHHHHHHHHHHHhccCceEEEEcChHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999874 499999999988772 1 1 34444 6779999999999
Q ss_pred cEEEecchhhhhcCCCCCh-Hh----------hhhHHHHHHhCCcEEEeCCccccCCChHHH
Q 036921 309 PAVVTRVVDSMTDNLRPTR-AE----------ATDVANAVLDGSDAILLGAETLRGLYPVET 359 (527)
Q Consensus 309 pvi~Tq~LeSM~~~p~Ptr-aE----------v~Dv~nav~~g~D~imLs~Eta~G~yP~e~ 359 (527)
.+|.+ |-- -.|.+ .+ ..|-.....+|+||-++- ||-.+
T Consensus 302 ~AIdG-----m~a-~ip~kdd~~~n~~~l~~~r~dk~~~~~lGfDGkwvi-------HP~qV 350 (511)
T cd00727 302 HAMGG-----MAA-QIPIKDDPAANEAALAKVRADKLREATAGHDGTWVA-------HPGLV 350 (511)
T ss_pred Ccccc-----hhh-cCCcccchhhHHHHHHHHHHHHHHHHhCCCCccccc-------CHHHH
Confidence 98851 110 12322 11 356667888999998775 77554
No 32
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.64 E-value=6.3e-07 Score=97.50 Aligned_cols=255 Identities=16% Similarity=0.179 Sum_probs=155.0
Q ss_pred cccCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCe
Q 036921 18 LEPSKASFFPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPE 97 (527)
Q Consensus 18 ~~~~~~~~~~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gpk 97 (527)
..|.|+..+.||+-| | ||. +..++.+.+.+|++++=++|--+..-.|+.+++--..+.+.....+ |-..|
T Consensus 57 va~~p~~l~~RRvei--t-gP~--d~km~inAlnsgad~~m~D~EDa~aPtwkn~i~gq~nl~~al~~~i----~~~~~- 126 (511)
T TIGR01344 57 IAPIPPDLQDRRVEI--T-GPV--DRKMVINALNAGAKVFMADFEDSSSPTWENVIYGQINLRDAIRGQI----DFTDP- 126 (511)
T ss_pred cCCCChhhcCCeeEE--e-CCC--CHHHHHHHhcCCCCEEEeCcccCCCCCchhHHHHHHHHHHHHhCcC----CCcCC-
Confidence 458888889999988 3 797 6899999999999999999999997777665543333322221111 00000
Q ss_pred EEeeeCCCCcEEeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEE
Q 036921 98 LQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTC 177 (527)
Q Consensus 98 iR~~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~ 177 (527)
..++.+.|+.+-.+.+....+ +..+++. |.+| |.
T Consensus 127 -----~~gk~y~l~~~~~~liVRprG-------~hl~e~h----------v~~d-----g~------------------- 160 (511)
T TIGR01344 127 -----TSGKEYALNARLAVLIVRPRG-------WHLPERH----------LTID-----GE------------------- 160 (511)
T ss_pred -----CCCceeecCCCceEEEEecCC-------CCCCcch----------hccC-----CC-------------------
Confidence 001222222221111111110 1111111 1111 21
Q ss_pred EEEeCcEecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHc----CCC-CCce
Q 036921 178 VIKNTATLAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKL----GDL-SQTQ 252 (527)
Q Consensus 178 ~v~~~G~l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~----~~~-~~~~ 252 (527)
-+|+.-++.--+.-+|.+.+. ....|+ +|.+|+|++++|++.+.+.+... |.. ..++
T Consensus 161 ---------------~~~~~l~Dfgl~~~hd~~~l~--~~g~Gp-~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk 222 (511)
T TIGR01344 161 ---------------AIPGSLFDFGLYFFHNARALL--KKGKGP-YFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIK 222 (511)
T ss_pred ---------------cCchHHHHHHHHHHhhHHHHH--hCCCCC-EEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCcee
Confidence 122333333333445555442 123354 99999999999999998887633 321 4588
Q ss_pred EEEeecChHhHhhHHHHHHhC----CEEEEeCCCCcCCCC----c----------------hhHHHHHHHHHHHHHHcCC
Q 036921 253 IFAKIENIEGLTHFDEILQAA----DGIILSRGNLGIDLP----P----------------EKVFLFQKAALYKCNMAGK 308 (527)
Q Consensus 253 IiaKIEt~~av~nldeI~~~s----DgImIaRgDLg~e~~----~----------------~~v~~~qk~Ii~~c~~~gK 308 (527)
+.+.|||+.|+-|++||+.+. .|+..||.|+..++. . +-+...++.++.+|+++|+
T Consensus 223 ~~vlIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~ 302 (511)
T TIGR01344 223 ATVLIETLPAAFEMDEILYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGA 302 (511)
T ss_pred EEEEecCHHHHHhHHHHHHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999863 599999999994333 1 2333447888899999999
Q ss_pred cEEEecchhhhhcCCCCCh--H------h---hhhHHHHHHhCCcEEEeCCccccCCChHHH
Q 036921 309 PAVVTRVVDSMTDNLRPTR--A------E---ATDVANAVLDGSDAILLGAETLRGLYPVET 359 (527)
Q Consensus 309 pvi~Tq~LeSM~~~p~Ptr--a------E---v~Dv~nav~~g~D~imLs~Eta~G~yP~e~ 359 (527)
.+|. .| -- -.|.+ . - ..|-.....+|+||-++- ||-.+
T Consensus 303 ~AId-Gm----~a-~ip~k~D~~~n~~al~~vr~dk~re~~lGfDGkwvi-------HP~qV 351 (511)
T TIGR01344 303 HAMG-GM----AA-FIPIKGDPAANEAAMNKVRADKIREAKNGHDGTWVA-------HPDLV 351 (511)
T ss_pred CccC-ch----hc-cCCcccChhhHHHHHHHHHHHHHHHHhCCCCccccC-------CHHHH
Confidence 9886 11 00 01222 1 1 255666888999997775 77553
No 33
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=98.59 E-value=9.3e-08 Score=97.06 Aligned_cols=136 Identities=19% Similarity=0.201 Sum_probs=105.6
Q ss_pred CHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCce-EEEeecChHhHhhHHHHHHhC---CEEEEeC
Q 036921 205 SDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQ-IFAKIENIEGLTHFDEILQAA---DGIILSR 280 (527)
Q Consensus 205 t~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~-IiaKIEt~~av~nldeI~~~s---DgImIaR 280 (527)
|++-.+|+. ..+..++|+|.+|+|+++.|+.++...+.+......+. +++.|||++|+.|..+|...+ .|+.+|.
T Consensus 66 t~~g~~Dl~-av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga 144 (283)
T COG2301 66 TPWGADDLA-AVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGA 144 (283)
T ss_pred ChhhHHHHH-HHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecH
Confidence 456677775 56888999999999999999999999988664212233 999999999999999999988 7999999
Q ss_pred CCCcCCCCch-------hHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEe
Q 036921 281 GNLGIDLPPE-------KVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (527)
Q Consensus 281 gDLg~e~~~~-------~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imL 346 (527)
.||..+++.. .+..+..+|+.+|+.+|++.+.+-. +=+++|.-- ..+..++...|+||-++
T Consensus 145 ~Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D~V~--~d~~d~~g~---~~e~~~a~~~Gf~GK~~ 212 (283)
T COG2301 145 NDLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAIDGVY--TDINDPEGF---AREAAQAAALGFDGKTC 212 (283)
T ss_pred HHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCcccccc--cccCCHHHH---HHHHHHHHHcCCCcccc
Confidence 9998888762 6778999999999999999976211 011222221 25667778889888665
No 34
>PRK09255 malate synthase; Validated
Probab=98.52 E-value=3.2e-06 Score=92.57 Aligned_cols=254 Identities=17% Similarity=0.191 Sum_probs=154.8
Q ss_pred cccCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCe
Q 036921 18 LEPSKASFFPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPE 97 (527)
Q Consensus 18 ~~~~~~~~~~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gpk 97 (527)
+.|.|+..+.||+-| | ||.+ ..++.+.+.+|++++=++|--+..-.|+.+++--..+.+.....+.
T Consensus 78 va~~p~~l~~RRvei--t-gP~~--~km~~nAlnsgad~~m~D~EDa~aP~wkn~i~gq~nl~~al~~~i~--------- 143 (531)
T PRK09255 78 VAPIPADLQDRRVEI--T-GPVD--RKMVINALNSGAKVFMADFEDSNAPTWDNVIDGQINLRDAVRGTIS--------- 143 (531)
T ss_pred eCCCChhhcCCeeEE--e-CCCC--HHHHHHHhcCCCCEEEeccccCCCCCchHHHHHHHHHHHHHcCCCC---------
Confidence 348888888899887 3 7976 8999999999999999999999977777665543333332221110
Q ss_pred EEeeeCCCCcEEeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEE
Q 036921 98 LQVVNKSEKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTC 177 (527)
Q Consensus 98 iR~~~~~~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~ 177 (527)
+.=..|..++|..+ ...+.|=...+. -+-..|++| |.
T Consensus 144 ----------~~~~~Gk~y~l~~~------~~~l~VRprG~h---l~e~hv~vd-----G~------------------- 180 (531)
T PRK09255 144 ----------YTNEAGKEYRLNPK------PAVLIVRPRGWH---LPEKHVTVD-----GE------------------- 180 (531)
T ss_pred ----------ccCCCCCeeecCCC------CceEEEecCCCC---CCcchhhcC-----Cc-------------------
Confidence 00012333333110 001111000000 000011111 21
Q ss_pred EEEeCcEecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHc----CCC-CCce
Q 036921 178 VIKNTATLAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKL----GDL-SQTQ 252 (527)
Q Consensus 178 ~v~~~G~l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~----~~~-~~~~ 252 (527)
-+|+.-++.--+.-+|.+.+.. ...|+ +|.+|++++++|++.+.+++... |.+ ..++
T Consensus 181 ---------------~v~~~l~Dfgl~~fhd~~~l~~--~g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIk 242 (531)
T PRK09255 181 ---------------PISGSLFDFALYFFHNAKELLA--KGSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIK 242 (531)
T ss_pred ---------------ccchhHHHHHHHHHhhHHHHHh--CCCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 1223323322222345554432 35677 99999999999999999888643 321 4688
Q ss_pred EEEeecChHhHhhHHHHHHhC----CEEEEeCCCCcCC----CCc-------h--------hHHHH-HHHHHHHHHHcCC
Q 036921 253 IFAKIENIEGLTHFDEILQAA----DGIILSRGNLGID----LPP-------E--------KVFLF-QKAALYKCNMAGK 308 (527)
Q Consensus 253 IiaKIEt~~av~nldeI~~~s----DgImIaRgDLg~e----~~~-------~--------~v~~~-qk~Ii~~c~~~gK 308 (527)
+.+.|||+.|+-|++||+.++ -|+..||.|+..+ ++. . .+..+ ++.++.+|+++|+
T Consensus 243 i~vLIET~~A~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~ 322 (531)
T PRK09255 243 ATVLIETLPAAFEMDEILYELREHIAGLNCGRWDYIFSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGA 322 (531)
T ss_pred EEEEecCHHHHHHHHHHHHhccCceEEEEcChHHhhhhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999875 4999999999965 221 1 34444 7788899999999
Q ss_pred cEEEecchhhhhcCCCCCh----------Hh-hhhHHHHHHhCCcEEEeCCccccCCChHHH
Q 036921 309 PAVVTRVVDSMTDNLRPTR----------AE-ATDVANAVLDGSDAILLGAETLRGLYPVET 359 (527)
Q Consensus 309 pvi~Tq~LeSM~~~p~Ptr----------aE-v~Dv~nav~~g~D~imLs~Eta~G~yP~e~ 359 (527)
.+|. .|-- -.|.+ +. ..|-.....+|+||-++- ||-.+
T Consensus 323 ~AId-Gm~a-----~ip~k~D~~~n~~a~~g~r~dk~r~~~lGfDGkwvi-------HP~qV 371 (531)
T PRK09255 323 HAMG-GMAA-----FIPIKNDPEANEAALAKVRADKEREANDGHDGTWVA-------HPGLV 371 (531)
T ss_pred CccC-chhh-----cCCcccChhhhHHHHHHHHHHHHHHHhCCCCcceec-------CHHHH
Confidence 9885 1110 12322 11 155566888999998775 77554
No 35
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.40 E-value=1.4e-05 Score=87.80 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=91.9
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHHc----CCC-CCceEEEeecChHhHhhHHHHHHhC-C---EEEEeCCCCcCCCCc-
Q 036921 220 KIDFLSLSYTRHAEDVRQAREYLSKL----GDL-SQTQIFAKIENIEGLTHFDEILQAA-D---GIILSRGNLGIDLPP- 289 (527)
Q Consensus 220 g~d~I~~sfV~s~~dv~~lr~~l~~~----~~~-~~~~IiaKIEt~~av~nldeI~~~s-D---gImIaRgDLg~e~~~- 289 (527)
+--+|.+|++++++|++.+.+++... |.. ..+++++.|||..|+-|++||+... + |+..||.|+..+++.
T Consensus 184 ~gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~ 263 (511)
T cd00480 184 SGPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKT 263 (511)
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhccc
Confidence 34489999999999999999887543 211 3588999999999999999999873 4 999999999998842
Q ss_pred ----------h--------h-HHHHHHHHHHHHHHcCCcEEE---ecch-hhhhcCCCCChHhh-hhHHHHHHhCCcEEE
Q 036921 290 ----------E--------K-VFLFQKAALYKCNMAGKPAVV---TRVV-DSMTDNLRPTRAEA-TDVANAVLDGSDAIL 345 (527)
Q Consensus 290 ----------~--------~-v~~~qk~Ii~~c~~~gKpvi~---Tq~L-eSM~~~p~PtraEv-~Dv~nav~~g~D~im 345 (527)
. . +..+++.++.+|+++|.++|. .++- ..|-..+...-+.+ .|...+...|+||-+
T Consensus 264 ~~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkw 343 (511)
T cd00480 264 FRNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTW 343 (511)
T ss_pred cccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCccc
Confidence 1 2 556678899999999999875 2211 01111011011111 566668889999876
Q ss_pred eC
Q 036921 346 LG 347 (527)
Q Consensus 346 Ls 347 (527)
.-
T Consensus 344 vi 345 (511)
T cd00480 344 VA 345 (511)
T ss_pred cc
Confidence 64
No 36
>PLN02626 malate synthase
Probab=98.23 E-value=3e-05 Score=84.72 Aligned_cols=253 Identities=15% Similarity=0.174 Sum_probs=149.8
Q ss_pred cccCCCCCCCCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCe
Q 036921 18 LEPSKASFFPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPE 97 (527)
Q Consensus 18 ~~~~~~~~~~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gpk 97 (527)
+.|.|+....||+-| | ||. +..++.+.+++|+++|=.+|--+....|..+++--....+.....+.
T Consensus 81 va~~p~~L~dRrvEI--t-gP~--drkm~inalNSga~~~maDfEDs~sPtW~n~i~Gq~nl~~a~~~~i~--------- 146 (551)
T PLN02626 81 CAPVPPAVADRRVEI--T-GPV--ERKMVINALNSGAKVFMADFEDSLSPTWENLMRGQVNLRDAVRGTIT--------- 146 (551)
T ss_pred eCCCChhhccceeee--c-CCC--cHHHHHHHHcCCCCEEEecCCccCCCcchhHHHHHHHHHHHhcCCCc---------
Confidence 458888888999998 4 995 48899999999999999999999777787776643333222221110
Q ss_pred EEeeeCCCCcEEe-ecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEE
Q 036921 98 LQVVNKSEKAISL-KADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVT 176 (527)
Q Consensus 98 iR~~~~~~~~i~l-~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~ 176 (527)
+.- .+|..++|.. +...+.|=..... =.-+.|++| |.
T Consensus 147 ----------~~~~~~Gk~y~l~~------~~a~l~vRpRG~h---l~E~hv~vd-----G~------------------ 184 (551)
T PLN02626 147 ----------FTDKARGKVYKLND------KTAKLFVRPRGWH---LPEAHILVD-----GE------------------ 184 (551)
T ss_pred ----------cccCCCCceEeeCC------CcceEEEecCccc---CCcchhccC-----CC------------------
Confidence 000 1233333311 0011111111000 000111111 21
Q ss_pred EEEEeCcEecCCCcccccCCccccCCCCCHhhHHHHHhhcccc--cc-cEEEecCCCCHHHHHHHHHHHHHc----CC-C
Q 036921 177 CVIKNTATLAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQN--KI-DFLSLSYTRHAEDVRQAREYLSKL----GD-L 248 (527)
Q Consensus 177 ~~v~~~G~l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~--g~-d~I~~sfV~s~~dv~~lr~~l~~~----~~-~ 248 (527)
-+|+.-++.--+.-++.+.+ ++. |- -||.+|++++++|++...+++... |. .
T Consensus 185 ----------------pv~g~L~DfgL~~fhn~~~l----~~~~~GsgpYfyLPKles~~Ear~w~dvf~~~E~~lGlp~ 244 (551)
T PLN02626 185 ----------------PATGSLFDFGLYFFHNYAAF----RAKQGGFGPFFYLPKMEHSREARLWNDVFEAAEKMAGIPR 244 (551)
T ss_pred ----------------CCccHHHHHHHHHHhhHHHH----HhccCCCCceEeccCCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 01222222211111222222 233 43 589999999999999999887532 22 2
Q ss_pred CCceEEEeecChHhHhhHHHHHHhC----CEEEEeCCCC----cCCCCc-------h--h----HHHHH---HHHHHHHH
Q 036921 249 SQTQIFAKIENIEGLTHFDEILQAA----DGIILSRGNL----GIDLPP-------E--K----VFLFQ---KAALYKCN 304 (527)
Q Consensus 249 ~~~~IiaKIEt~~av~nldeI~~~s----DgImIaRgDL----g~e~~~-------~--~----v~~~q---k~Ii~~c~ 304 (527)
..+++.+.|||..|+-|++||+..+ -|+..||-|+ ...++. + . .+.++ +.++.+|+
T Consensus 245 GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach 324 (551)
T PLN02626 245 GSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFRAHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCH 324 (551)
T ss_pred CceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhccCCCCCCCCccccchhhHHHHHHHHHHHHHHH
Confidence 4689999999999999999999876 4999999999 222211 1 2 44444 49999999
Q ss_pred HcCCcEEEecchhhh--hcCCCCChHhh----hhHHHHHHhCCcEEEeC
Q 036921 305 MAGKPAVVTRVVDSM--TDNLRPTRAEA----TDVANAVLDGSDAILLG 347 (527)
Q Consensus 305 ~~gKpvi~Tq~LeSM--~~~p~PtraEv----~Dv~nav~~g~D~imLs 347 (527)
++|...|. .|---+ .+.|.++.+.. .|-.....+|+||-+.-
T Consensus 325 ~rG~~AIg-GM~a~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~wVi 372 (551)
T PLN02626 325 KRGVHAMG-GMAAQIPIKDDPAANEAALALVRKDKLREVRAGHDGTWAA 372 (551)
T ss_pred hcCCcccc-cccccccCCCChhhhHHHHHHHHHHHHHHHhcCCCceeec
Confidence 99999875 222222 22333432323 45666889999998885
No 37
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.16 E-value=1.9e-05 Score=81.09 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=98.2
Q ss_pred CCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHc-------C--CCCCceEEEeecChHhHhhHHHHHHh
Q 036921 202 PTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKL-------G--DLSQTQIFAKIENIEGLTHFDEILQA 272 (527)
Q Consensus 202 p~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~-------~--~~~~~~IiaKIEt~~av~nldeI~~~ 272 (527)
|.+-....+.|. .+...|-=.|++|||.+.+++.++++++.+. | ...++++-++||++.++--+|++++.
T Consensus 119 p~~f~~QlrAil-ra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~ 197 (293)
T PF02896_consen 119 PELFRTQLRAIL-RAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKE 197 (293)
T ss_dssp HHHHHHHHHHHH-HHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTT
T ss_pred hhhHHHHHHHHH-HHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHH
Confidence 445556677775 4566776679999999999999999987644 1 12568999999999999999999999
Q ss_pred CCEEEEeCCCCcC-----C---------CC--chhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHH
Q 036921 273 ADGIILSRGNLGI-----D---------LP--PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN 335 (527)
Q Consensus 273 sDgImIaRgDLg~-----e---------~~--~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n 335 (527)
+|.+-||-.||.- + +. -+.+..+-++++++|+++||||.+ .+|- ++-.-+..
T Consensus 198 ~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a-----------~~p~~~~~ 266 (293)
T PF02896_consen 198 VDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMA-----------SDPEAIPL 266 (293)
T ss_dssp SSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGG-----------GSHHHHHH
T ss_pred CCEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCC-----------CCHHHHHH
Confidence 9999998888721 1 11 146778889999999999999999 8753 22233456
Q ss_pred HHHhCCcEEEeCC
Q 036921 336 AVLDGSDAILLGA 348 (527)
Q Consensus 336 av~~g~D~imLs~ 348 (527)
.+..|.|.+..+.
T Consensus 267 Ll~lGi~~lSv~p 279 (293)
T PF02896_consen 267 LLGLGIRSLSVSP 279 (293)
T ss_dssp HHHHT-SEEEE-G
T ss_pred HHHcCCCEEEECH
Confidence 7788999999883
No 38
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.07 E-value=0.0017 Score=74.97 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=98.9
Q ss_pred CCCCHhhHHHHHhhccc-ccccEEEecCCCCHHHHHHHHHHHHH--------cCCC-CCceEEEeecChHhHhhHHHHHH
Q 036921 202 PTLSDKDKEVISSWGVQ-NKIDFLSLSYTRHAEDVRQAREYLSK--------LGDL-SQTQIFAKIENIEGLTHFDEILQ 271 (527)
Q Consensus 202 p~lt~~D~~di~~~~~~-~g~d~I~~sfV~s~~dv~~lr~~l~~--------~~~~-~~~~IiaKIEt~~av~nldeI~~ 271 (527)
|.+-.-..+.|. .+-. .|-=.|++|||.+.++++++|+++.+ .|.. .++++=++||++.|+--+|++++
T Consensus 532 ~~~f~~QlrAil-ra~~~~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~ 610 (748)
T PRK11061 532 PEIFLIQVRAML-RANAATGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLAS 610 (748)
T ss_pred HHHHHHHHHHHH-HHHhhCCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHH
Confidence 333344455554 3333 56567999999999999999988763 1311 23779999999999999999999
Q ss_pred hCCEEEEeCCCCcCCCCc-----------------hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhH
Q 036921 272 AADGIILSRGNLGIDLPP-----------------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDV 333 (527)
Q Consensus 272 ~sDgImIaRgDLg~e~~~-----------------~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv 333 (527)
.+|.+=||-.||.- +-+ +.|..+.++++++|+++||||.+ .+| -. .|...
T Consensus 611 ~~DF~SIGtNDL~Q-y~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~----a~--dp~~~----- 678 (748)
T PRK11061 611 RVDFISVGTNDLTQ-YLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEM----AG--DPMGA----- 678 (748)
T ss_pred hCCEEEECccHHHH-HHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCc----cc--CHHHH-----
Confidence 99999999999852 111 46777889999999999999999 774 22 23332
Q ss_pred HHHHHhCCcEEEeC
Q 036921 334 ANAVLDGSDAILLG 347 (527)
Q Consensus 334 ~nav~~g~D~imLs 347 (527)
.-.+..|.|-+-++
T Consensus 679 ~~L~glGi~~lS~~ 692 (748)
T PRK11061 679 LLLIGLGYRHLSMN 692 (748)
T ss_pred HHHHHCCCcEEccC
Confidence 45677899887666
No 39
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=96.70 E-value=0.013 Score=68.63 Aligned_cols=135 Identities=16% Similarity=0.116 Sum_probs=97.8
Q ss_pred CCCCHhhHHHHHhhccc---ccc---cEEEecCCCCHHHHHHHHHHHHHc--------CCCCCceEEEeecChHhHhhHH
Q 036921 202 PTLSDKDKEVISSWGVQ---NKI---DFLSLSYTRHAEDVRQAREYLSKL--------GDLSQTQIFAKIENIEGLTHFD 267 (527)
Q Consensus 202 p~lt~~D~~di~~~~~~---~g~---d~I~~sfV~s~~dv~~lr~~l~~~--------~~~~~~~IiaKIEt~~av~nld 267 (527)
|.+-+-..+.|...+.. .|. =-|++|||.+.++++.+|+.+.+. |...++.|=++||++.|.-.+|
T Consensus 670 pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~ad 749 (856)
T TIGR01828 670 PEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALTAD 749 (856)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHHHH
Confidence 44555566666422222 263 279999999999999999877532 2223478999999999999999
Q ss_pred HHHHhCCEEEEeCCCCcCC------------C------------Cc-----hhHHHHHHHHHHHHHH--cCCcEEE-ecc
Q 036921 268 EILQAADGIILSRGNLGID------------L------------PP-----EKVFLFQKAALYKCNM--AGKPAVV-TRV 315 (527)
Q Consensus 268 eI~~~sDgImIaRgDLg~e------------~------------~~-----~~v~~~qk~Ii~~c~~--~gKpvi~-Tq~ 315 (527)
+|++.+|.+-||-.||.-- + |+ +-|....+.++++|++ +|+|+.+ .++
T Consensus 750 ~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCGE~ 829 (856)
T TIGR01828 750 KIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICGEH 829 (856)
T ss_pred HHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCCCC
Confidence 9999999999988886411 1 11 3467778899999999 8999999 764
Q ss_pred hhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 316 VDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 316 LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
- ..|.- +...+..|.|-+-.|
T Consensus 830 a------~dp~~-----i~~l~~~Gi~~~S~s 850 (856)
T TIGR01828 830 G------GDPSS-----IEFCHKIGLNYVSCS 850 (856)
T ss_pred c------CCHHH-----HHHHHHCCCCEEEEC
Confidence 2 23322 345677799988877
No 40
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.66 E-value=0.019 Score=61.03 Aligned_cols=115 Identities=15% Similarity=0.174 Sum_probs=72.5
Q ss_pred hcccccccEEEecC-------CCCHHHHHHHHHHHHHcCCCCCceEEE-eecChHhHhhHHHHHHhCCEEEEeCCCCcCC
Q 036921 215 WGVQNKIDFLSLSY-------TRHAEDVRQAREYLSKLGDLSQTQIFA-KIENIEGLTHFDEILQAADGIILSRGNLGID 286 (527)
Q Consensus 215 ~~~~~g~d~I~~sf-------V~s~~dv~~lr~~l~~~~~~~~~~Iia-KIEt~~av~nldeI~~~sDgImIaRgDLg~e 286 (527)
.+.+.|+|+|.+.. ..+..+...+.+++++. +++||+ .|-|.+....+.+ .=+|+||+|+|-=+..
T Consensus 149 ~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~----~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~Gs~~ 222 (368)
T PRK08649 149 TVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL----DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGPGAAC 222 (368)
T ss_pred HHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC----CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCcCC
Confidence 45799999999954 22322455566666653 467887 8888887766654 4579999998862111
Q ss_pred CCch----hHHHHH--HHHHHHHHHc-------CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 287 LPPE----KVFLFQ--KAALYKCNMA-------GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 287 ~~~~----~v~~~q--k~Ii~~c~~~-------gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
.... .+|.+. ....++++++ +.|+|. ..+- .-.|++.|+..|||++|+.
T Consensus 223 ~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~------------~~~diakAlalGAd~Vm~G 285 (368)
T PRK08649 223 TSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGGIG------------TSGDIAKAIACGADAVMLG 285 (368)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCC------------CHHHHHHHHHcCCCeeccc
Confidence 1110 122111 1222222322 689998 6642 3379999999999999984
No 41
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=96.63 E-value=0.0083 Score=66.22 Aligned_cols=132 Identities=14% Similarity=0.080 Sum_probs=100.3
Q ss_pred CCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHH-------HcCC--CCCceEEEeecChHhHhhHHHHHHhC
Q 036921 203 TLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLS-------KLGD--LSQTQIFAKIENIEGLTHFDEILQAA 273 (527)
Q Consensus 203 ~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~-------~~~~--~~~~~IiaKIEt~~av~nldeI~~~s 273 (527)
.+-.-.++.|. .+-.+|-=.|++|||-|.++++++|..+. ..|. .+++.+=.+||.+.|.-.+|.+++..
T Consensus 369 ~if~tQLRAil-RAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lakev 447 (574)
T COG1080 369 EIFRTQLRAIL-RASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAKEV 447 (574)
T ss_pred HHHHHHHHHHH-HhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHHhC
Confidence 34444556664 56778888999999999999999998774 2222 13688899999999999999999999
Q ss_pred CEEEEeCCCCcCCCCc-----------------hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHH
Q 036921 274 DGIILSRGNLGIDLPP-----------------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN 335 (527)
Q Consensus 274 DgImIaRgDLg~e~~~-----------------~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n 335 (527)
|-+=||-.||. .+.+ +.|..+.++++..++++||||.+ .+| - ..|.- +--
T Consensus 448 DFfSIGTNDLt-QYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGEl----A--gD~~a-----~pl 515 (574)
T COG1080 448 DFFSIGTNDLT-QYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGEL----A--GDPAA-----TPL 515 (574)
T ss_pred CEeeecccHHH-HHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhh----c--cChhh-----HHH
Confidence 99999999985 2221 47778889999999999999998 654 1 22222 233
Q ss_pred HHHhCCcEEEeC
Q 036921 336 AVLDGSDAILLG 347 (527)
Q Consensus 336 av~~g~D~imLs 347 (527)
.+-.|.|=+-+|
T Consensus 516 LlGlGldElSms 527 (574)
T COG1080 516 LLGLGLDELSMS 527 (574)
T ss_pred HHhcCcchhccC
Confidence 566788776666
No 42
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=96.61 E-value=0.014 Score=64.08 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=80.1
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHHcCC---------------------CCCceEEEeecChHhHhhHHHHHHhC-----
Q 036921 220 KIDFLSLSYTRHAEDVRQAREYLSKLGD---------------------LSQTQIFAKIENIEGLTHFDEILQAA----- 273 (527)
Q Consensus 220 g~d~I~~sfV~s~~dv~~lr~~l~~~~~---------------------~~~~~IiaKIEt~~av~nldeI~~~s----- 273 (527)
.+-.|++||.++++|+.++..+..+.+. ...+.||.-+||.+++.|.++|++.-
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 6778999999999999999888776641 13458999999999999999999861
Q ss_pred -C--EEEEeCCCCcCCCCc----hhHHHHHHHHHHHHHHcCCcEEE
Q 036921 274 -D--GIILSRGNLGIDLPP----EKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 274 -D--gImIaRgDLg~e~~~----~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
+ -||+||.|=+.+.|. -.+..+|.++.+.|+++|.++..
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~p 247 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYP 247 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 1 799999999999997 37789999999999999999765
No 43
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=96.00 E-value=0.036 Score=60.70 Aligned_cols=95 Identities=18% Similarity=0.157 Sum_probs=81.5
Q ss_pred cccccEEEecCCCCHHHHHHHHHHHHHcC--C----------CCCceEEEeecChHhHhhHHHHHHhC----------CE
Q 036921 218 QNKIDFLSLSYTRHAEDVRQAREYLSKLG--D----------LSQTQIFAKIENIEGLTHFDEILQAA----------DG 275 (527)
Q Consensus 218 ~~g~d~I~~sfV~s~~dv~~lr~~l~~~~--~----------~~~~~IiaKIEt~~av~nldeI~~~s----------Dg 275 (527)
...+..+++||+++++|+.++..++++.| . ...+.|+.-+||.+.+.|.++|++.- =-
T Consensus 119 ~~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qe 198 (494)
T PRK13655 119 TQPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLR 198 (494)
T ss_pred chhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeE
Confidence 55677899999999999999988776654 1 13578999999999999999999751 28
Q ss_pred EEEeCCCCcCCCCc----hhHHHHHHHHHHHHHHcCCcEEE
Q 036921 276 IILSRGNLGIDLPP----EKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 276 ImIaRgDLg~e~~~----~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
||+|+.|=+.+-|. -.+..+|.++.+.|+++|.++..
T Consensus 199 VmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 199 VFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred EEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99999999999997 47889999999999999998765
No 44
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=95.91 E-value=0.054 Score=63.55 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=101.8
Q ss_pred cCCcccc--CCCCCHhhHHHHHhhccc---cccc---EEEecCCCCHHHHHHHHHHHH--------HcCCCCCceEEEee
Q 036921 194 ASQIRIE--LPTLSDKDKEVISSWGVQ---NKID---FLSLSYTRHAEDVRQAREYLS--------KLGDLSQTQIFAKI 257 (527)
Q Consensus 194 lp~~~~~--lp~lt~~D~~di~~~~~~---~g~d---~I~~sfV~s~~dv~~lr~~l~--------~~~~~~~~~IiaKI 257 (527)
+.|.++. .|.+.+-..+.|...+.+ .|.+ -|++|||.+.++++.+|+.+. +.|...+.+|=.+|
T Consensus 666 ~RG~Rl~l~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MI 745 (879)
T PRK09279 666 HRGCRLGITYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMI 745 (879)
T ss_pred cchhhcccCChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEE
Confidence 3454443 355666666676533333 3533 499999999999999998652 22422357899999
Q ss_pred cChHhHhhHHHHHHhCCEEEEeCCCCcCC------------C------------Cc-----hhHHHHHHHHHHHHHH--c
Q 036921 258 ENIEGLTHFDEILQAADGIILSRGNLGID------------L------------PP-----EKVFLFQKAALYKCNM--A 306 (527)
Q Consensus 258 Et~~av~nldeI~~~sDgImIaRgDLg~e------------~------------~~-----~~v~~~qk~Ii~~c~~--~ 306 (527)
|++.|.--+|+|++.+|.+-||-.||.-- + |+ +-|..+.+..+++|++ .
T Consensus 746 EvP~Aal~ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~ 825 (879)
T PRK09279 746 ELPRAALTADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRP 825 (879)
T ss_pred ehHHHHHhHHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998887421 1 11 2466777889999998 7
Q ss_pred CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 307 GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 307 gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
|+|+.+ .++ ...| .-+...+..|.|-+-.|
T Consensus 826 ~~~vgICGE~------ggdp-----~~i~~l~~lGld~vS~s 856 (879)
T PRK09279 826 DLKLGICGEH------GGDP-----ASIEFCHKVGLDYVSCS 856 (879)
T ss_pred CCEEEECCCC------ccCH-----HHHHHHHHCCCCEEEEC
Confidence 999999 663 1233 23456677799988877
No 45
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=95.66 E-value=0.17 Score=53.58 Aligned_cols=123 Identities=17% Similarity=0.201 Sum_probs=81.3
Q ss_pred hhHHHHHhhcccccccEEEe--cCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCc
Q 036921 207 KDKEVISSWGVQNKIDFLSL--SYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLG 284 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~--sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg 284 (527)
.|.+.+. ..++.|+|+|++ +...+...+..++++-...+ +-..|.--|-|.++.++|-+ .-+|+|-||=|-=+
T Consensus 108 ~~~er~~-~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~--~~~viaGNV~T~e~a~~L~~--aGad~vkVGiGpGs 182 (352)
T PF00478_consen 108 DDFERAE-ALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFP--DVPVIAGNVVTYEGAKDLID--AGADAVKVGIGPGS 182 (352)
T ss_dssp CHHHHHH-HHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHST--TSEEEEEEE-SHHHHHHHHH--TT-SEEEESSSSST
T ss_pred HHHHHHH-HHHHcCCCEEEccccCccHHHHHHHHHHHHHhCC--CceEEecccCCHHHHHHHHH--cCCCEEEEeccCCc
Confidence 4455554 347899999988 68888877777776444332 23445568999999977543 23799999755322
Q ss_pred CCC-------CchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 285 IDL-------PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 285 ~e~-------~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+-+ +.+ -..+-....++|+.+++|+|- ..+ ---.|++.|+..|||++||.
T Consensus 183 iCtTr~v~GvG~P-Q~tAv~~~a~~a~~~~v~iIADGGi------------~~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 183 ICTTREVTGVGVP-QLTAVYECAEAARDYGVPIIADGGI------------RTSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp TBHHHHHHSBSCT-HHHHHHHHHHHHHCTTSEEEEESS-------------SSHHHHHHHHHTT-SEEEES
T ss_pred ccccccccccCCc-HHHHHHHHHHHhhhccCceeecCCc------------Ccccceeeeeeecccceeec
Confidence 221 112 334556777888889999997 553 23589999999999999994
No 46
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.60 E-value=0.23 Score=52.04 Aligned_cols=124 Identities=19% Similarity=0.285 Sum_probs=77.1
Q ss_pred HhhHHHHHhhcccccccEEEecCCC-CHHHHHHHHHHHHHcCCCCCceEEE-eecChHhHhhHHHHHHhCCEEEEe--CC
Q 036921 206 DKDKEVISSWGVQNKIDFLSLSYTR-HAEDVRQAREYLSKLGDLSQTQIFA-KIENIEGLTHFDEILQAADGIILS--RG 281 (527)
Q Consensus 206 ~~D~~di~~~~~~~g~d~I~~sfV~-s~~dv~~lr~~l~~~~~~~~~~Iia-KIEt~~av~nldeI~~~sDgImIa--Rg 281 (527)
+.+.+.+. ..++.|+|+|.+++-. +.+...++.+.+.+.+ .++.|++ .+.|.+....+.+ .=+|+|.++ +|
T Consensus 93 ~~~~~~~~-~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~--p~v~Vi~G~v~t~~~A~~l~~--aGaD~I~vg~g~G 167 (325)
T cd00381 93 EDDKERAE-ALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKY--PNVDVIAGNVVTAEAARDLID--AGADGVKVGIGPG 167 (325)
T ss_pred hhHHHHHH-HHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHC--CCceEEECCCCCHHHHHHHHh--cCCCEEEECCCCC
Confidence 45566665 5689999999886532 2244555555555554 4577776 6777666544432 237999984 32
Q ss_pred CCc--C---CCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 282 NLG--I---DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 282 DLg--~---e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
--. . ..+.+. ..+-..+.+.|+..++|+|- ..+- .-.|++.|+..|+|++|+.
T Consensus 168 ~~~~t~~~~g~g~p~-~~~i~~v~~~~~~~~vpVIA~GGI~------------~~~di~kAla~GA~~VmiG 226 (325)
T cd00381 168 SICTTRIVTGVGVPQ-ATAVADVAAAARDYGVPVIADGGIR------------TSGDIVKALAAGADAVMLG 226 (325)
T ss_pred cCcccceeCCCCCCH-HHHHHHHHHHHhhcCCcEEecCCCC------------CHHHHHHHHHcCCCEEEec
Confidence 211 0 011122 23334566777778999997 5532 3468899999999999993
No 47
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=95.56 E-value=0.081 Score=56.35 Aligned_cols=112 Identities=19% Similarity=0.304 Sum_probs=67.3
Q ss_pred hcccccccEEEec-------CCCCHHHHHHHHHHHHHcCCCCCceEEE-eecChHhHhhHHHHHHhCCEEEEeCCCC---
Q 036921 215 WGVQNKIDFLSLS-------YTRHAEDVRQAREYLSKLGDLSQTQIFA-KIENIEGLTHFDEILQAADGIILSRGNL--- 283 (527)
Q Consensus 215 ~~~~~g~d~I~~s-------fV~s~~dv~~lr~~l~~~~~~~~~~Iia-KIEt~~av~nldeI~~~sDgImIaRgDL--- 283 (527)
.+.+.|+|.|++. |+....+-..+.+++.+. +++||+ .+-|.+....+-+ .=+|+||+|||--
T Consensus 150 ~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~----~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg~~~~ 223 (369)
T TIGR01304 150 IVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL----DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGGANTT 223 (369)
T ss_pred HHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC----CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCccc
Confidence 5689999999975 222222344555555543 467776 7777666554444 3579999987542
Q ss_pred ----cCCCCchhHHHHHHHHHHHHH----Hc---CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 284 ----GIDLPPEKVFLFQKAALYKCN----MA---GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 284 ----g~e~~~~~v~~~qk~Ii~~c~----~~---gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+..+|. +.+-..+..+++ +. .+|+|. ..+- --.|++.|+..|||++|+.
T Consensus 224 ~~~lg~~~p~---~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~------------tg~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 224 RLVLGIEVPM---ATAIADVAAARRDYLDETGGRYVHVIADGGIE------------TSGDLVKAIACGADAVVLG 284 (369)
T ss_pred ccccCCCCCH---HHHHHHHHHHHHHHHHhcCCCCceEEEeCCCC------------CHHHHHHHHHcCCCEeeeH
Confidence 222221 111112222222 12 389998 6642 2379999999999999985
No 48
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=95.25 E-value=0.13 Score=60.69 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=102.2
Q ss_pred ccccEEEecCCCCHHHHHHHHHHHHHcCCC------CCceEEEeecChHhHhhHHHHHHh-----------C---C--EE
Q 036921 219 NKIDFLSLSYTRHAEDVRQAREYLSKLGDL------SQTQIFAKIENIEGLTHFDEILQA-----------A---D--GI 276 (527)
Q Consensus 219 ~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~------~~~~IiaKIEt~~av~nldeI~~~-----------s---D--gI 276 (527)
..+..+++||+++++||.++--++++.|.. ..+.|+.-.||.+.++|.++|++. . + -|
T Consensus 485 ~~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeV 564 (911)
T PRK00009 485 EAIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEV 564 (911)
T ss_pred hhhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEE
Confidence 356789999999999999999988877631 257899999999999999999986 1 2 79
Q ss_pred EEeCCCCcCCCCc----hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCC---cE----E
Q 036921 277 ILSRGNLGIDLPP----EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGS---DA----I 344 (527)
Q Consensus 277 mIaRgDLg~e~~~----~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~---D~----i 344 (527)
|+|..|=+-+-|. -.+..+|+++.+.|+++|.++.. -..=-|.-...-|+- .|+...- =. +
T Consensus 565 MlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~FhGrGGsv~RGGgp~~-------~ai~~qp~g~~~g~iR~ 637 (911)
T PRK00009 565 MLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLFHGRGGTVGRGGGPAY-------AAILSQPPGSVKGRIRV 637 (911)
T ss_pred EeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCChHH-------HHHHhCCCccccCceEE
Confidence 9999999999987 48889999999999999999876 333233333334433 2332222 11 3
Q ss_pred EeCCccccCC--ChHHHHHHHHHHHH
Q 036921 345 LLGAETLRGL--YPVETISIVGKICA 368 (527)
Q Consensus 345 mLs~Eta~G~--yP~e~V~~~~~i~~ 368 (527)
--.||+-.-+ +|..+++.+...+.
T Consensus 638 TeQGEvI~~kY~~~~~a~~nLE~~~~ 663 (911)
T PRK00009 638 TEQGEVIRSKYGLPEVARRNLELLTA 663 (911)
T ss_pred EeechhHHHhcCChHHHHHHHHHHHH
Confidence 3455544434 46666665544443
No 49
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=94.98 E-value=0.13 Score=56.90 Aligned_cols=137 Identities=16% Similarity=0.133 Sum_probs=103.6
Q ss_pred cccccEEEecCCCCHHHHHHHHHHHHHcC---------CCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCc----
Q 036921 218 QNKIDFLSLSYTRHAEDVRQAREYLSKLG---------DLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLG---- 284 (527)
Q Consensus 218 ~~g~d~I~~sfV~s~~dv~~lr~~l~~~~---------~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg---- 284 (527)
..|-=-|++|+|.+.+++++.++++.... ....+.|=+++|-+..+=.+++++...|-|=||-.||.
T Consensus 556 g~g~L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~Qyll 635 (756)
T COG3605 556 GTGNLRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLL 635 (756)
T ss_pred CCcCceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHH
Confidence 33445799999999999999999885431 12456788999999999999999999999999999974
Q ss_pred -CCCCc-----------hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccc
Q 036921 285 -IDLPP-----------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETL 351 (527)
Q Consensus 285 -~e~~~-----------~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta 351 (527)
++=+- +.+..+-|+|..+|..+|+||-+ .+|- ..|--| .--+..|++.+-++ -|+
T Consensus 636 AvDR~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEMA------g~Pl~A-----~~LigLGfrslSMn-~~~ 703 (756)
T COG3605 636 AVDRNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEMA------GDPLSA-----MALIGLGFRSLSMN-PRS 703 (756)
T ss_pred HHhcCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhhc------CChHHH-----HHHHhcCcCccccC-ccc
Confidence 22221 35667889999999999999998 6652 355444 45677899998887 466
Q ss_pred cCCChHHHHHHHHHHHHHHh
Q 036921 352 RGLYPVETISIVGKICAEAE 371 (527)
Q Consensus 352 ~G~yP~e~V~~~~~i~~~aE 371 (527)
+|+ ||+|-+=+..++
T Consensus 704 v~~-----VK~ml~~ld~~~ 718 (756)
T COG3605 704 VGP-----VKYLLRHLDLAE 718 (756)
T ss_pred ccc-----HHHHHHhccHHH
Confidence 774 666665444433
No 50
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=94.74 E-value=0.46 Score=49.80 Aligned_cols=126 Identities=17% Similarity=0.100 Sum_probs=79.3
Q ss_pred CCHhhHHHHHhhcccc--cccEEEec--CCCCHHHHHHHHHHHHHcCCCCCceEEEe-ecChHhHhhHHHHHHhCCEEEE
Q 036921 204 LSDKDKEVISSWGVQN--KIDFLSLS--YTRHAEDVRQAREYLSKLGDLSQTQIFAK-IENIEGLTHFDEILQAADGIIL 278 (527)
Q Consensus 204 lt~~D~~di~~~~~~~--g~d~I~~s--fV~s~~dv~~lr~~l~~~~~~~~~~IiaK-IEt~~av~nldeI~~~sDgImI 278 (527)
.++.|++-+. ..+++ ++|+|++- .=.|...++.++. +++.- .+..||+= |-|+++.+++-+ .=+|+|.|
T Consensus 104 ~~~~d~er~~-~L~~a~~~~d~iviD~AhGhs~~~i~~ik~-ir~~~--p~~~viaGNV~T~e~a~~Li~--aGAD~ikV 177 (343)
T TIGR01305 104 SSDNDLEKMT-SILEAVPQLKFICLDVANGYSEHFVEFVKL-VREAF--PEHTIMAGNVVTGEMVEELIL--SGADIVKV 177 (343)
T ss_pred cCHHHHHHHH-HHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHhhC--CCCeEEEecccCHHHHHHHHH--cCCCEEEE
Confidence 4667777775 44666 59998864 3334444444433 33332 45788888 999999876543 45799998
Q ss_pred eCCCCcCCCCc--hh----HHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 279 SRGNLGIDLPP--EK----VFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 279 aRgDLg~e~~~--~~----v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+=|-=++..+- .- -..+-..+.++++..++|+|. ..+= .-.||+.|+..|||++|+.
T Consensus 178 giGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr------------~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 178 GIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCT------------CPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred cccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcC------------chhHHHHHHHcCCCEEEEC
Confidence 62221222211 11 223334556666667889998 6642 2489999999999999996
No 51
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.08 E-value=1.5 Score=43.90 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=75.1
Q ss_pred HHhhcccccccEEEecC--CCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEE---eCCCCcCC
Q 036921 212 ISSWGVQNKIDFLSLSY--TRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIIL---SRGNLGID 286 (527)
Q Consensus 212 i~~~~~~~g~d~I~~sf--V~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImI---aRgDLg~e 286 (527)
+. .+.+.|+|+|.++. +++.++..++.+.+.+.| -+..+...=+| -.+.+..+++.+|++++ -+|..+ .
T Consensus 94 i~-~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~G--l~~~~~v~p~T--~~e~l~~~~~~~~~~l~msv~~~~g~-~ 167 (244)
T PRK13125 94 LN-MARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKG--LKPVFFTSPKF--PDLLIHRLSKLSPLFIYYGLRPATGV-P 167 (244)
T ss_pred HH-HHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcC--CCEEEEECCCC--CHHHHHHHHHhCCCEEEEEeCCCCCC-C
Confidence 54 45899999999985 577788999999998887 44455554444 46778999999998874 334422 2
Q ss_pred CCchhHHHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 287 LPPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 287 ~~~~~v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+..-...-++..|+. .+|+.+ ..+ =+. .++..+...|+|+++..
T Consensus 168 -----~~~~~~~~i~~lr~~~~~~~i~v~gGI---------~~~---e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 168 -----LPVSVERNIKRVRNLVGNKYLVVGFGL---------DSP---EDARDALSAGADGVVVG 214 (244)
T ss_pred -----chHHHHHHHHHHHHhcCCCCEEEeCCc---------CCH---HHHHHHHHcCCCEEEEC
Confidence 233334445555554 468776 542 222 35566667899998875
No 52
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=93.98 E-value=0.51 Score=52.42 Aligned_cols=124 Identities=13% Similarity=0.249 Sum_probs=76.1
Q ss_pred CHhhHHHHHhhcccccccEEEecCC--CCHHHHHHHHHHHHHcCCCCCceEEEe-ecChHhHhhHHHHHHhCCEEEEe--
Q 036921 205 SDKDKEVISSWGVQNKIDFLSLSYT--RHAEDVRQAREYLSKLGDLSQTQIFAK-IENIEGLTHFDEILQAADGIILS-- 279 (527)
Q Consensus 205 t~~D~~di~~~~~~~g~d~I~~sfV--~s~~dv~~lr~~l~~~~~~~~~~IiaK-IEt~~av~nldeI~~~sDgImIa-- 279 (527)
.+.+.+.+. ..++.|+|+|++--- .+...+..++ .++..- .+..||++ |-|.+.-.++.+ .=+|+|.++
T Consensus 246 ~~~~~~r~~-~l~~ag~d~i~iD~~~g~~~~~~~~i~-~ik~~~--p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g 319 (505)
T PLN02274 246 RESDKERLE-HLVKAGVDVVVLDSSQGDSIYQLEMIK-YIKKTY--PELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMG 319 (505)
T ss_pred CccHHHHHH-HHHHcCCCEEEEeCCCCCcHHHHHHHH-HHHHhC--CCCcEEEecCCCHHHHHHHHH--cCcCEEEECCC
Confidence 345566665 468999999987543 2332222222 233222 45778775 999888766655 357999885
Q ss_pred CCCCcCC-----CCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 280 RGNLGID-----LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 280 RgDLg~e-----~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+|--+.. .+.+.+ ..-..+-+.+++.++|+|. ..+- --.|+..|+..|||++|+.
T Consensus 320 ~G~~~~t~~~~~~g~~~~-~~i~~~~~~~~~~~vpVIadGGI~------------~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 320 SGSICTTQEVCAVGRGQA-TAVYKVASIAAQHGVPVIADGGIS------------NSGHIVKALTLGASTVMMG 380 (505)
T ss_pred CCccccCccccccCCCcc-cHHHHHHHHHHhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEc
Confidence 4421111 111111 1222355566778999998 6642 2378999999999999985
No 53
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=93.82 E-value=7.4 Score=38.70 Aligned_cols=195 Identities=18% Similarity=0.138 Sum_probs=116.6
Q ss_pred CCCHhhHHHHHhhcccccccEEEecCCCCH------HHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhC-CE
Q 036921 203 TLSDKDKEVISSWGVQNKIDFLSLSYTRHA------EDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAA-DG 275 (527)
Q Consensus 203 ~lt~~D~~di~~~~~~~g~d~I~~sfV~s~------~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~s-Dg 275 (527)
.+|..++..+.....+.|+|.|=+.+-.+. ++..++-+.+.+.+ .+..+.+..=+ +.+.++...+.. |.
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~--~~~~~~~l~~~--~~~~i~~a~~~g~~~ 90 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLV--PNVKLQALVRN--REKGIERALEAGVDE 90 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhcc--CCcEEEEEccC--chhhHHHHHhCCcCE
Confidence 345566665544556789999999988887 67766666666655 45566565533 244455555543 66
Q ss_pred EEEeCCCCc-------CCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHH-HHHhCCcEEEe
Q 036921 276 IILSRGNLG-------IDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILL 346 (527)
Q Consensus 276 ImIaRgDLg-------~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n-av~~g~D~imL 346 (527)
|.+. .+.+ ...+.+....--...++.++++|.++.+ ... ...+.=+..++.+++. +...|+|.+.|
T Consensus 91 i~i~-~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~----~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 91 VRIF-DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED----AFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred EEEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe----ecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 6553 1111 0123334556667888899999999887 431 1111245566666666 56679999999
Q ss_pred CCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCc
Q 036921 347 GAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSG 420 (527)
Q Consensus 347 s~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG 420 (527)
. +|.=.-.|.+.-++++.+.+.... .....++++. -.+|.+-...|...+|.. |=.|-.|
T Consensus 166 ~-Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H~Hn~-----------~gla~an~laA~~aG~~~-id~s~~G 225 (265)
T cd03174 166 K-DTVGLATPEEVAELVKALREALPD-VPLGLHTHNT-----------LGLAVANSLAALEAGADR-VDGSVNG 225 (265)
T ss_pred c-hhcCCcCHHHHHHHHHHHHHhCCC-CeEEEEeCCC-----------CChHHHHHHHHHHcCCCE-EEecccc
Confidence 7 665567898888887777655432 2222222211 134445555667778874 3445444
No 54
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=93.69 E-value=1.2 Score=49.47 Aligned_cols=124 Identities=15% Similarity=0.243 Sum_probs=78.6
Q ss_pred CHhhHHHHHhhcccccccEEEecCC--CCHHHHHHHHHHHHHcCCCCCceEEE-eecChHhHhhHHHHHHhCCEEEEe--
Q 036921 205 SDKDKEVISSWGVQNKIDFLSLSYT--RHAEDVRQAREYLSKLGDLSQTQIFA-KIENIEGLTHFDEILQAADGIILS-- 279 (527)
Q Consensus 205 t~~D~~di~~~~~~~g~d~I~~sfV--~s~~dv~~lr~~l~~~~~~~~~~Iia-KIEt~~av~nldeI~~~sDgImIa-- 279 (527)
++.+.+.+. ..++.|+|+|.+..- ++...++.+++ +.+.- .+..|+| -+-|.+...++-+ .=+|+|.+|
T Consensus 239 ~~~~~~~~~-~l~~ag~d~i~id~a~G~s~~~~~~i~~-ik~~~--~~~~v~aG~V~t~~~a~~~~~--aGad~I~vg~g 312 (495)
T PTZ00314 239 RPEDIERAA-ALIEAGVDVLVVDSSQGNSIYQIDMIKK-LKSNY--PHVDIIAGNVVTADQAKNLID--AGADGLRIGMG 312 (495)
T ss_pred CHHHHHHHH-HHHHCCCCEEEEecCCCCchHHHHHHHH-HHhhC--CCceEEECCcCCHHHHHHHHH--cCCCEEEECCc
Confidence 445666675 568999999998754 44443333333 22222 3578888 5666666544332 236999864
Q ss_pred CCCCc-----CCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 280 RGNLG-----IDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 280 RgDLg-----~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+|--+ ...+.+.+ .+-..+.+.|++.|.|+|. ..+. --.|++.|+..|||++|+.
T Consensus 313 ~Gs~~~t~~~~~~g~p~~-~ai~~~~~~~~~~~v~vIadGGi~------------~~~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 313 SGSICITQEVCAVGRPQA-SAVYHVARYARERGVPCIADGGIK------------NSGDICKALALGADCVMLG 373 (495)
T ss_pred CCcccccchhccCCCChH-HHHHHHHHHHhhcCCeEEecCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 55321 12233222 3445677788999999997 6543 2378899999999999996
No 55
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=93.50 E-value=0.44 Score=56.73 Aligned_cols=139 Identities=13% Similarity=0.138 Sum_probs=102.5
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHHcCC---CCCceEEEeecChHhHhhHHHHHHh-------------C----CEEEEeC
Q 036921 221 IDFLSLSYTRHAEDVRQAREYLSKLGD---LSQTQIFAKIENIEGLTHFDEILQA-------------A----DGIILSR 280 (527)
Q Consensus 221 ~d~I~~sfV~s~~dv~~lr~~l~~~~~---~~~~~IiaKIEt~~av~nldeI~~~-------------s----DgImIaR 280 (527)
+...++||.++++||.++.-+.++.|. ...+.|+.-.||.+.++|.++|++. . =-||+|+
T Consensus 546 lg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGY 625 (974)
T PTZ00398 546 LGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGY 625 (974)
T ss_pred cceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEec
Confidence 446899999999999999988887542 2357899999999999999999975 1 1799999
Q ss_pred CCCcCCCCc----hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCC
Q 036921 281 GNLGIDLPP----EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLY 355 (527)
Q Consensus 281 gDLg~e~~~----~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~y 355 (527)
.|=+.+-|. -.+..+|.++.+.|+++|+.+.. -..=.|+-...-|+..-+-.--.....|.=-+--.||+-.-+|
T Consensus 626 SDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~FhGrGGsvgRGGgp~~~aIlsqp~~~~~g~ir~TeQGE~i~~ky 705 (974)
T PTZ00398 626 SDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFFHGRGGSVSRGGGPQHLAILSQPPNTIKSYLRITIQGETITQNF 705 (974)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCCCCCCCCCChHHHHhcCCCccccCeeEEeeechhhHHhc
Confidence 999999987 48889999999999999999877 5544566666666554321111112234434555667666677
Q ss_pred hHHH
Q 036921 356 PVET 359 (527)
Q Consensus 356 P~e~ 359 (527)
+...
T Consensus 706 ~~~~ 709 (974)
T PTZ00398 706 GLKG 709 (974)
T ss_pred CChH
Confidence 6544
No 56
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.34 E-value=1 Score=49.40 Aligned_cols=124 Identities=19% Similarity=0.248 Sum_probs=78.9
Q ss_pred CHhhHHHHHhhcccccccEEEecCC--CCHHHHHHHHHHHHHcCCCCCceEEE-eecChHhHhhHHHHHHhCCEEEEe--
Q 036921 205 SDKDKEVISSWGVQNKIDFLSLSYT--RHAEDVRQAREYLSKLGDLSQTQIFA-KIENIEGLTHFDEILQAADGIILS-- 279 (527)
Q Consensus 205 t~~D~~di~~~~~~~g~d~I~~sfV--~s~~dv~~lr~~l~~~~~~~~~~Iia-KIEt~~av~nldeI~~~sDgImIa-- 279 (527)
.+.+.+.+. ..++.|+|+|.+-.. .+.. +.+..+.+.+.- .+..|++ -+-|+++..++-+ .=+|+|-||
T Consensus 222 ~~~~~~r~~-~L~~aG~d~I~vd~a~g~~~~-~~~~i~~i~~~~--~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g 295 (450)
T TIGR01302 222 REFDKERAE-ALVKAGVDVIVIDSSHGHSIY-VIDSIKEIKKTY--PDLDIIAGNVATAEQAKALID--AGADGLRVGIG 295 (450)
T ss_pred chhHHHHHH-HHHHhCCCEEEEECCCCcHhH-HHHHHHHHHHhC--CCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCC
Confidence 456666665 468999999998653 3332 333223333331 3567666 7888887766544 346999865
Q ss_pred CCCCcC-----CCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 280 RGNLGI-----DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 280 RgDLg~-----e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+|--.. ..+.+. ..+...+.+.|++.++|+|. ..+- --.|++.|+..|||++|+.
T Consensus 296 ~G~~~~t~~~~~~g~p~-~~~i~~~~~~~~~~~vpviadGGi~------------~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 296 PGSICTTRIVAGVGVPQ-ITAVYDVAEYAAQSGIPVIADGGIR------------YSGDIVKALAAGADAVMLG 356 (450)
T ss_pred CCcCCccceecCCCccH-HHHHHHHHHHHhhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEC
Confidence 552211 122222 24556677788889999997 6542 2368899999999999995
No 57
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.85 E-value=1 Score=47.20 Aligned_cols=121 Identities=13% Similarity=0.266 Sum_probs=76.1
Q ss_pred CCHhhHHHHHhhccccc--ccEEEecC--CCCHHHHHHHHHHHHHcCCCCCceEEEe-ecChHhHhhHHHHHHhCCEEEE
Q 036921 204 LSDKDKEVISSWGVQNK--IDFLSLSY--TRHAEDVRQAREYLSKLGDLSQTQIFAK-IENIEGLTHFDEILQAADGIIL 278 (527)
Q Consensus 204 lt~~D~~di~~~~~~~g--~d~I~~sf--V~s~~dv~~lr~~l~~~~~~~~~~IiaK-IEt~~av~nldeI~~~sDgImI 278 (527)
.+++|.+.+. ..++.| +|+|.+-- =.|..-++.++. +++.- +.+.+|++ +.|.+....+.+ .=+|+|.|
T Consensus 91 ~t~e~~~r~~-~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~-i~~~~--p~~~vi~GnV~t~e~a~~l~~--aGad~I~V 164 (321)
T TIGR01306 91 VKACEYEFVT-QLAEEALTPEYITIDIAHGHSNSVINMIKH-IKTHL--PDSFVIAGNVGTPEAVRELEN--AGADATKV 164 (321)
T ss_pred CCHHHHHHHH-HHHhcCCCCCEEEEeCccCchHHHHHHHHH-HHHhC--CCCEEEEecCCCHHHHHHHHH--cCcCEEEE
Confidence 4778888886 458888 69888643 333444444444 33222 45678888 988888766654 24699998
Q ss_pred e--CCCC-------cCCCCchhHHHHH-HHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 279 S--RGNL-------GIDLPPEKVFLFQ-KAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 279 a--RgDL-------g~e~~~~~v~~~q-k~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+ +|-- |+..+ ..| ..|.+.+.+..+|+|. ..+- --.|++.|+..|||++|+.
T Consensus 165 ~~G~G~~~~tr~~~g~g~~-----~~~l~ai~ev~~a~~~pVIadGGIr------------~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 165 GIGPGKVCITKIKTGFGTG-----GWQLAALRWCAKAARKPIIADGGIR------------THGDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCCCCccccceeeeccCCC-----chHHHHHHHHHHhcCCeEEEECCcC------------cHHHHHHHHHcCCCEEeec
Confidence 7 2321 12222 112 2233334445789988 6642 2479999999999999996
No 58
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.53 E-value=2.5 Score=44.42 Aligned_cols=126 Identities=17% Similarity=0.102 Sum_probs=79.1
Q ss_pred CCHhhHHHHHhhccc--ccccEEEec--CCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEe
Q 036921 204 LSDKDKEVISSWGVQ--NKIDFLSLS--YTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILS 279 (527)
Q Consensus 204 lt~~D~~di~~~~~~--~g~d~I~~s--fV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIa 279 (527)
.++.|++-+. ..++ .|+|+|++- .=.|...++.++. +++.- +....|.--+-|+++.++|-+ +=+|++-||
T Consensus 105 ~~~~d~er~~-~L~~~~~g~D~iviD~AhGhs~~~i~~ik~-ik~~~-P~~~vIaGNV~T~e~a~~Li~--aGAD~vKVG 179 (346)
T PRK05096 105 TSDADFEKTK-QILALSPALNFICIDVANGYSEHFVQFVAK-AREAW-PDKTICAGNVVTGEMVEELIL--SGADIVKVG 179 (346)
T ss_pred CCHHHHHHHH-HHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHHhC-CCCcEEEecccCHHHHHHHHH--cCCCEEEEc
Confidence 4667777775 3455 599998863 4444444444544 33332 023345567999999877543 457998875
Q ss_pred --CCCCcCC-----CCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 280 --RGNLGID-----LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 280 --RgDLg~e-----~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+|-.... .|.+. ..+-....+.|++.|+|+|- ..+ ---.|++.|+..|||++||.
T Consensus 180 IGpGSiCtTr~vtGvG~PQ-ltAV~~~a~~a~~~gvpiIADGGi------------~~sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 180 IGPGSVCTTRVKTGVGYPQ-LSAVIECADAAHGLGGQIVSDGGC------------TVPGDVAKAFGGGADFVMLG 242 (346)
T ss_pred ccCCccccCccccccChhH-HHHHHHHHHHHHHcCCCEEecCCc------------ccccHHHHHHHcCCCEEEeC
Confidence 3332211 11222 23445677778889999997 553 12389999999999999994
No 59
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=92.49 E-value=12 Score=37.58 Aligned_cols=191 Identities=16% Similarity=0.203 Sum_probs=109.9
Q ss_pred CCCHhhHHHHHhhcccccccEEEecCCCCH-HHHHHHHHHHHHcCCCCCceEEEee-cChHhHhhHHHHHHh-CCEEEEe
Q 036921 203 TLSDKDKEVISSWGVQNKIDFLSLSYTRHA-EDVRQAREYLSKLGDLSQTQIFAKI-ENIEGLTHFDEILQA-ADGIILS 279 (527)
Q Consensus 203 ~lt~~D~~di~~~~~~~g~d~I~~sfV~s~-~dv~~lr~~l~~~~~~~~~~IiaKI-Et~~av~nldeI~~~-sDgImIa 279 (527)
.+|..++..+.+...+.|+|.|=+.|-... .+.+.++.+. +.+ .+..+.+-. -+.+++ +...+. .|.|-+.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~-~~~--~~~~~~~~~r~~~~~v---~~a~~~g~~~i~i~ 89 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIV-ALG--LPARLIVWCRAVKEDI---EAALRCGVTAVHIS 89 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHH-hcC--CCCEEEEeccCCHHHH---HHHHhCCcCEEEEE
Confidence 356677777666667799999877654433 3334454443 333 345555543 234444 333333 2544442
Q ss_pred --CCCC----cCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHH-HHhCCcEEEeCCccc
Q 036921 280 --RGNL----GIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANA-VLDGSDAILLGAETL 351 (527)
Q Consensus 280 --RgDL----g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~na-v~~g~D~imLs~Eta 351 (527)
-.|. -...+.++.....+.+++.|+++|..+.+ . ....+-+..++.+++.. ...|+|.|.|. +|.
T Consensus 90 ~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~ 162 (259)
T cd07939 90 IPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRFA-DTV 162 (259)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEeC-CCC
Confidence 2221 11223345556667899999999998766 3 12334556777777764 45699999997 777
Q ss_pred cCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCc
Q 036921 352 RGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSG 420 (527)
Q Consensus 352 ~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG 420 (527)
=.-+|.+.-+.+..+.+... .....++++ +. -+|.+-...|.+.+++. |=.|-.|
T Consensus 163 G~~~P~~v~~lv~~l~~~~~--~~l~~H~Hn---------~~--Gla~An~laAi~aG~~~-vd~s~~G 217 (259)
T cd07939 163 GILDPFTTYELIRRLRAATD--LPLEFHAHN---------DL--GLATANTLAAVRAGATH-VSVTVNG 217 (259)
T ss_pred CCCCHHHHHHHHHHHHHhcC--CeEEEEecC---------CC--ChHHHHHHHHHHhCCCE-EEEeccc
Confidence 78899998888888775432 111112221 11 23444445566778873 4445444
No 60
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=92.41 E-value=2.2 Score=41.87 Aligned_cols=113 Identities=15% Similarity=0.252 Sum_probs=65.9
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCCcCCC
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNLGIDL 287 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDLg~e~ 287 (527)
.+.++ .+.+.|+|+|.++.-.+.+.++.+++ .++.++.++.+.+ .+..+.+. +|+|.+....-+-..
T Consensus 70 ~~~~~-~~~~~g~d~v~l~~~~~~~~~~~~~~--------~~i~~i~~v~~~~---~~~~~~~~gad~i~~~~~~~~G~~ 137 (236)
T cd04730 70 EALLE-VALEEGVPVVSFSFGPPAEVVERLKA--------AGIKVIPTVTSVE---EARKAEAAGADALVAQGAEAGGHR 137 (236)
T ss_pred HHHHH-HHHhCCCCEEEEcCCCCHHHHHHHHH--------cCCEEEEeCCCHH---HHHHHHHcCCCEEEEeCcCCCCCC
Confidence 34453 55789999999998765544444432 3467888887653 33444443 588877332211111
Q ss_pred CchhHHHHHHHHHHHHHH-cCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 288 PPEKVFLFQKAALYKCNM-AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 288 ~~~~v~~~qk~Ii~~c~~-~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
.... ......++.+++ .++|++. ..+ - ...|+..++..|+|+|++.
T Consensus 138 ~~~~--~~~~~~i~~i~~~~~~Pvi~~GGI---------~---~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 138 GTFD--IGTFALVPEVRDAVDIPVIAAGGI---------A---DGRGIAAALALGADGVQMG 185 (236)
T ss_pred Cccc--cCHHHHHHHHHHHhCCCEEEECCC---------C---CHHHHHHHHHcCCcEEEEc
Confidence 1110 112334444443 3799998 553 1 2356777788999999997
No 61
>PLN02591 tryptophan synthase
Probab=92.18 E-value=4.2 Score=41.16 Aligned_cols=114 Identities=16% Similarity=0.154 Sum_probs=76.2
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEE--eCCCCcCCCCchhH
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIIL--SRGNLGIDLPPEKV 292 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImI--aRgDLg~e~~~~~v 292 (527)
.+.+.|+|++++|-.- .++..++++.+.+.| +..|.-+---..-+.+..|++.++|.+= +| .|+.=.-..+
T Consensus 101 ~~~~aGv~GviipDLP-~ee~~~~~~~~~~~g----l~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvTG~~~~~ 173 (250)
T PLN02591 101 TIKEAGVHGLVVPDLP-LEETEALRAEAAKNG----IELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVTGARASV 173 (250)
T ss_pred HHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcC----CeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCcCCCcCC
Confidence 5578999999999764 588888888888766 4555555222234578999999976652 33 2222111244
Q ss_pred HHHHHHHHHHHHHc-CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 293 FLFQKAALYKCNMA-GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 293 ~~~qk~Ii~~c~~~-gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+.-.+..++.++++ ++|+++ ..+ =|+. |+......|+||+...
T Consensus 174 ~~~~~~~i~~vk~~~~~Pv~vGFGI---------~~~e---~v~~~~~~GADGvIVG 218 (250)
T PLN02591 174 SGRVESLLQELKEVTDKPVAVGFGI---------SKPE---HAKQIAGWGADGVIVG 218 (250)
T ss_pred chhHHHHHHHHHhcCCCceEEeCCC---------CCHH---HHHHHHhcCCCEEEEC
Confidence 55567777777774 999998 763 2333 5566666799999886
No 62
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=91.92 E-value=2.8 Score=42.65 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 036921 232 AEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAV 311 (527)
Q Consensus 232 ~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi 311 (527)
.+.++.++++..+.| +.+++-+-+...++-+.+ ..|.+.||-+++. |..++.++.+.||||+
T Consensus 75 ~~gl~~l~~~~~~~G----l~~~t~~~d~~~~~~l~~---~~d~lkI~s~~~~-----------n~~LL~~~a~~gkPVi 136 (260)
T TIGR01361 75 EEGLKLLRRAADEHG----LPVVTEVMDPRDVEIVAE---YADILQIGARNMQ-----------NFELLKEVGKQGKPVL 136 (260)
T ss_pred HHHHHHHHHHHHHhC----CCEEEeeCChhhHHHHHh---hCCEEEECccccc-----------CHHHHHHHhcCCCcEE
Confidence 567888888877655 789998888887766654 4799999977764 2347888889999999
Q ss_pred E-ecchhhhhcCCCCChHhhhhHHHHHH-hCCcEEEeC
Q 036921 312 V-TRVVDSMTDNLRPTRAEATDVANAVL-DGSDAILLG 347 (527)
Q Consensus 312 ~-Tq~LeSM~~~p~PtraEv~Dv~nav~-~g~D~imLs 347 (527)
+ |.| .+|-.|+...+..+. .|.+=++|.
T Consensus 137 lk~G~--------~~t~~e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 137 LKRGM--------GNTIEEWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred EeCCC--------CCCHHHHHHHHHHHHHcCCCcEEEE
Confidence 9 876 357788888888775 577656664
No 63
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=91.92 E-value=5.7 Score=39.32 Aligned_cols=137 Identities=15% Similarity=0.195 Sum_probs=86.4
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEe---CCCCc-
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILS---RGNLG- 284 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIa---RgDLg- 284 (527)
...+..| .++|+|+|.+- +++..++.++-+.+++.| .+..+.-.=+| .++.++.++...|.|++- +|-=|
T Consensus 71 ~~~i~~~-~~~gad~i~~H-~Ea~~~~~~~l~~ik~~g--~k~GlalnP~T--p~~~i~~~l~~~D~vlvMtV~PGfgGq 144 (220)
T PRK08883 71 DRIIPDF-AKAGASMITFH-VEASEHVDRTLQLIKEHG--CQAGVVLNPAT--PLHHLEYIMDKVDLILLMSVNPGFGGQ 144 (220)
T ss_pred HHHHHHH-HHhCCCEEEEc-ccCcccHHHHHHHHHHcC--CcEEEEeCCCC--CHHHHHHHHHhCCeEEEEEecCCCCCc
Confidence 3455434 78999988876 576678888888888888 67777777777 677799999999988882 11111
Q ss_pred --CCCCchhHHHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHH
Q 036921 285 --IDLPPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVET 359 (527)
Q Consensus 285 --~e~~~~~v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~ 359 (527)
.+.+++++..+ -+...++ +.|+.+ ..+ +.. .+...+..|+|++...+.-.....|.++
T Consensus 145 ~fi~~~lekI~~l----~~~~~~~~~~~~I~vdGGI----------~~e---ni~~l~~aGAd~vVvGSaIf~~~d~~~~ 207 (220)
T PRK08883 145 SFIPHTLDKLRAV----RKMIDESGRDIRLEIDGGV----------KVD---NIREIAEAGADMFVAGSAIFGQPDYKAV 207 (220)
T ss_pred eecHhHHHHHHHH----HHHHHhcCCCeeEEEECCC----------CHH---HHHHHHHcCCCEEEEeHHHhCCCCHHHH
Confidence 11112222222 2222233 366655 443 222 3455566799999987443333568888
Q ss_pred HHHHHHHHH
Q 036921 360 ISIVGKICA 368 (527)
Q Consensus 360 V~~~~~i~~ 368 (527)
++.+++...
T Consensus 208 i~~l~~~~~ 216 (220)
T PRK08883 208 IDEMRAELA 216 (220)
T ss_pred HHHHHHHHH
Confidence 888877543
No 64
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.81 E-value=1.9 Score=48.04 Aligned_cols=119 Identities=19% Similarity=0.181 Sum_probs=68.2
Q ss_pred HHHHHhhcccccccEEEecCCCCHHH----HHHHHHHHHHcCCCCCceEEE-eecChHhHhhHHHHHHhCCEEEEeCCCC
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAED----VRQAREYLSKLGDLSQTQIFA-KIENIEGLTHFDEILQAADGIILSRGNL 283 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~d----v~~lr~~l~~~~~~~~~~Iia-KIEt~~av~nldeI~~~sDgImIaRgDL 283 (527)
.+.+. ..++.|+|+|.+. .+... ++.++.+-...+ ..+.|+| -|.|+++.+.+-+ .=+|+|.||.|-=
T Consensus 244 ~~ra~-~Lv~aGvd~i~vd--~a~g~~~~~~~~i~~ir~~~~--~~~~V~aGnV~t~e~a~~li~--aGAd~I~vg~g~G 316 (502)
T PRK07107 244 AERVP-ALVEAGADVLCID--SSEGYSEWQKRTLDWIREKYG--DSVKVGAGNVVDREGFRYLAE--AGADFVKVGIGGG 316 (502)
T ss_pred HHHHH-HHHHhCCCeEeec--CcccccHHHHHHHHHHHHhCC--CCceEEeccccCHHHHHHHHH--cCCCEEEECCCCC
Confidence 45554 4578999999987 22222 333333222222 2355555 6888888765543 3469999954332
Q ss_pred cC-------CCCchhHHHHHHHHHHHHH----HcC--CcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 284 GI-------DLPPEKVFLFQKAALYKCN----MAG--KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 284 g~-------e~~~~~v~~~qk~Ii~~c~----~~g--Kpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
++ ..|.+.+ .+-..+.++++ +.| +|+|. ..+ ---.|++.|+..|||++|+.
T Consensus 317 s~c~tr~~~~~g~~~~-~ai~~~~~a~~~~~~~~g~~~~viadgGi------------r~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 317 SICITREQKGIGRGQA-TALIEVAKARDEYFEETGVYIPICSDGGI------------VYDYHMTLALAMGADFIMLG 381 (502)
T ss_pred cCcccccccCCCccHH-HHHHHHHHHHHHHHhhcCCcceEEEcCCC------------CchhHHHHHHHcCCCeeeeC
Confidence 11 1122221 12223333333 347 89998 553 12489999999999999995
No 65
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.77 E-value=2.2 Score=44.03 Aligned_cols=127 Identities=19% Similarity=0.180 Sum_probs=75.9
Q ss_pred hhHHHHHhhcccccccEEEe----cCC-----------CCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHH
Q 036921 207 KDKEVISSWGVQNKIDFLSL----SYT-----------RHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQ 271 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~----sfV-----------~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~ 271 (527)
.|..+..+.+.+.|+|+|=+ |.. ++++.+.++.+.+.+. .+++|++||-- .+.++.++++
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~---~~~Pv~vKl~~--~~~~~~~~a~ 187 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA---VKIPVIAKLTP--NITDIREIAR 187 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh---cCCCeEEECCC--CchhHHHHHH
Confidence 44444433334467887765 222 4566677766666543 35789999942 3446666665
Q ss_pred h-----CCEEEEe-----CCCC-----------------cCCCCchhHHHHHHHHHHHHHHc--CCcEEE-ecchhhhhc
Q 036921 272 A-----ADGIILS-----RGNL-----------------GIDLPPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTD 321 (527)
Q Consensus 272 ~-----sDgImIa-----RgDL-----------------g~e~~~~~v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~ 321 (527)
. +|||.+. |-++ +.=-|....|...+.|-+..+.. ..|+|- ..+-
T Consensus 188 ~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~----- 262 (299)
T cd02940 188 AAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIE----- 262 (299)
T ss_pred HHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCC-----
Confidence 3 3888741 1111 10011123355566666666666 689888 6642
Q ss_pred CCCCChHhhhhHHHHHHhCCcEEEeCCcc
Q 036921 322 NLRPTRAEATDVANAVLDGSDAILLGAET 350 (527)
Q Consensus 322 ~p~PtraEv~Dv~nav~~g~D~imLs~Et 350 (527)
-..|+..++..|||+||+..-.
T Consensus 263 -------~~~da~~~l~aGA~~V~i~ta~ 284 (299)
T cd02940 263 -------SWEDAAEFLLLGASVVQVCTAV 284 (299)
T ss_pred -------CHHHHHHHHHcCCChheEceee
Confidence 3468888999999999998443
No 66
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.71 E-value=6 Score=40.50 Aligned_cols=127 Identities=16% Similarity=0.206 Sum_probs=72.8
Q ss_pred hhHHHHHhhcccccccEEEec------------CCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh--
Q 036921 207 KDKEVISSWGVQNKIDFLSLS------------YTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-- 272 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~s------------fV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-- 272 (527)
+|..+..+.+.+.|+|+|=+. +-++++.+.++.+.+.+. -+++|++||= + ..++..+|++.
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~---~~~Pv~vKl~-~-~~~~~~~~a~~~~ 176 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA---TDVPVIVKLT-P-NVTDIVEIARAAE 176 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc---cCCCEEEEeC-C-CchhHHHHHHHHH
Confidence 444444345567789998663 346666676766666654 2578999992 2 22345555442
Q ss_pred ---CCEEEEe-----CC-CCc-----------CCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhh
Q 036921 273 ---ADGIILS-----RG-NLG-----------IDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEAT 331 (527)
Q Consensus 273 ---sDgImIa-----Rg-DLg-----------~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~ 331 (527)
+|+|.+- +. |+- .--|....+...+.+-...+..+.|+|. ..+- ...
T Consensus 177 ~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~------------~~~ 244 (296)
T cd04740 177 EAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA------------SGE 244 (296)
T ss_pred HcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC------------CHH
Confidence 3887652 11 221 0011111222333333344445899998 6542 235
Q ss_pred hHHHHHHhCCcEEEeCCcc
Q 036921 332 DVANAVLDGSDAILLGAET 350 (527)
Q Consensus 332 Dv~nav~~g~D~imLs~Et 350 (527)
|+..++..|+|+|++..--
T Consensus 245 da~~~l~~GAd~V~igra~ 263 (296)
T cd04740 245 DALEFLMAGASAVQVGTAN 263 (296)
T ss_pred HHHHHHHcCCCEEEEchhh
Confidence 7788888999999998543
No 67
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=91.67 E-value=3.1 Score=43.31 Aligned_cols=112 Identities=12% Similarity=0.231 Sum_probs=66.7
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCCcCCC
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNLGIDL 287 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDLg~e~ 287 (527)
.+.+. .+++.|+++|.++|-...+.+++++ .. .+++++.+=|.+-. ....+. +|+|.+--.+-|-..
T Consensus 77 ~~~~~-~~~~~~v~~v~~~~g~p~~~i~~lk----~~----g~~v~~~v~s~~~a---~~a~~~GaD~Ivv~g~eagGh~ 144 (307)
T TIGR03151 77 DELVD-LVIEEKVPVVTTGAGNPGKYIPRLK----EN----GVKVIPVVASVALA---KRMEKAGADAVIAEGMESGGHI 144 (307)
T ss_pred HHHHH-HHHhCCCCEEEEcCCCcHHHHHHHH----Hc----CCEEEEEcCCHHHH---HHHHHcCCCEEEEECcccCCCC
Confidence 34443 5679999999998865544444443 33 37889988665433 222233 699987222333333
Q ss_pred CchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 288 PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 288 ~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+.......-+++. +..++|+|. ..+- .-.|++.+...|+|++++.
T Consensus 145 g~~~~~~ll~~v~---~~~~iPviaaGGI~------------~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 145 GELTTMALVPQVV---DAVSIPVIAAGGIA------------DGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred CCCcHHHHHHHHH---HHhCCCEEEECCCC------------CHHHHHHHHHcCCCEeecc
Confidence 2211122223333 334799998 6642 3456788888999999986
No 68
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=91.64 E-value=1.2 Score=51.84 Aligned_cols=113 Identities=18% Similarity=0.130 Sum_probs=89.1
Q ss_pred cEEEecCCCCHHHHHHHHHHHHHcCC--CCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCC------------C
Q 036921 222 DFLSLSYTRHAEDVRQAREYLSKLGD--LSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGID------------L 287 (527)
Q Consensus 222 d~I~~sfV~s~~dv~~lr~~l~~~~~--~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e------------~ 287 (527)
-.+++||+++..+...+. ... .+. .++.++..+||.+.++-..+||++..|++=+|-+||.-- .
T Consensus 596 ~~~mip~~~~~~e~~~~~-~~~-~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~ 673 (740)
T COG0574 596 VEIMIPFVRTEEEREKVI-ILE-EGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDE 673 (740)
T ss_pred cEEEccccccHHHHHHHH-HHh-hhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeecccccccc
Confidence 358999999999998888 443 121 123889999999999999999999999999999998632 2
Q ss_pred CchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 288 PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 288 ~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
..+.+-.+-+..+..|+.+++.+.+ .| .|...+. +..++..|.|+|..+
T Consensus 674 ~~~~v~~li~~a~~~~~~~~~~~~icG~---------~~~~p~~--a~~~~e~Gi~~Vs~n 723 (740)
T COG0574 674 RDPAVLKLIIIAIKAADSGGLLVGICGQ---------APSDPHG--AIFLVELGIDSVSLN 723 (740)
T ss_pred ccccHHHHHHHHHhcccccCcEEEEecc---------CCCCcHH--HHHHHHcCCCeEecC
Confidence 2247778888999999999999999 88 4544222 245788999999976
No 69
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.49 E-value=3.6 Score=44.46 Aligned_cols=124 Identities=14% Similarity=0.146 Sum_probs=75.0
Q ss_pred CHhhHHHHHhhcccccccEEE--ecCCCCHHHHHHHHHHHHHcCCCCCceE-EEeecChHhHhhHHHHHHhCCEEEEeCC
Q 036921 205 SDKDKEVISSWGVQNKIDFLS--LSYTRHAEDVRQAREYLSKLGDLSQTQI-FAKIENIEGLTHFDEILQAADGIILSRG 281 (527)
Q Consensus 205 t~~D~~di~~~~~~~g~d~I~--~sfV~s~~dv~~lr~~l~~~~~~~~~~I-iaKIEt~~av~nldeI~~~sDgImIaRg 281 (527)
++.+.+.+. ..++.|+|+|+ .+.=. .+.+.++.+.+++.- .+..| +.-|-|.++..++.+. -+|+|.+|=|
T Consensus 151 ~~~~~~~v~-~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~--p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g 224 (404)
T PRK06843 151 DIDTIERVE-ELVKAHVDILVIDSAHGH-STRIIELVKKIKTKY--PNLDLIAGNIVTKEAALDLISV--GADCLKVGIG 224 (404)
T ss_pred CHHHHHHHH-HHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhC--CCCcEEEEecCCHHHHHHHHHc--CCCEEEECCC
Confidence 344556665 46899999999 44422 234444444444432 34555 4478888888766552 4799998643
Q ss_pred CCcC-------CCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 282 NLGI-------DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 282 DLg~-------e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
-=+. ..+.+.+ .+-..+-+.+++.+.|+|. ..+- .-.|++.|+..|||++|+.
T Consensus 225 ~Gs~c~tr~~~g~g~p~l-tai~~v~~~~~~~~vpVIAdGGI~------------~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 225 PGSICTTRIVAGVGVPQI-TAICDVYEVCKNTNICIIADGGIR------------FSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred CCcCCcceeecCCCCChH-HHHHHHHHHHhhcCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEc
Confidence 2111 1122221 1222334566677999998 6531 3468899999999999985
No 70
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=91.35 E-value=16 Score=37.23 Aligned_cols=158 Identities=13% Similarity=0.112 Sum_probs=101.0
Q ss_pred cccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHH----------HHHHHHHHHHcCCCCCceEEEeecC
Q 036921 190 FTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAED----------VRQAREYLSKLGDLSQTQIFAKIEN 259 (527)
Q Consensus 190 kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~d----------v~~lr~~l~~~~~~~~~~IiaKIEt 259 (527)
-|-..|+.. +|..++..|.+..-+.|+|+|=+.|..+.++ .+.++++..... .+.++.+..-.
T Consensus 8 DG~q~~~~~-----f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~ 80 (266)
T cd07944 8 DGGYVNNWD-----FGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK--GNTKIAVMVDY 80 (266)
T ss_pred cCccccCcc-----CCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc--cCCEEEEEECC
Confidence 344556654 4777888886665668999998888655321 445555444331 25777777765
Q ss_pred hHhHhhHHHHHHhC----CEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHH
Q 036921 260 IEGLTHFDEILQAA----DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVAN 335 (527)
Q Consensus 260 ~~av~nldeI~~~s----DgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~n 335 (527)
... ++++|..+. |.|-++ .+...+ ...+.+++.++++|..+.+ ++..+ .+-+..++.+++.
T Consensus 81 ~~~--~~~~l~~a~~~gv~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~-~~~~a----~~~~~~~~~~~~~ 145 (266)
T cd07944 81 GND--DIDLLEPASGSVVDMIRVA-------FHKHEF-DEALPLIKAIKEKGYEVFF-NLMAI----SGYSDEELLELLE 145 (266)
T ss_pred CCC--CHHHHHHHhcCCcCEEEEe-------cccccH-HHHHHHHHHHHHCCCeEEE-EEEee----cCCCHHHHHHHHH
Confidence 432 344444332 666664 233333 4446788999999987765 22222 1345677777775
Q ss_pred -HHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 336 -AVLDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 336 -av~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
+...|+|.+.+. +|.=..+|.+.-+++..+.+..
T Consensus 146 ~~~~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 146 LVNEIKPDVFYIV-DSFGSMYPEDIKRIISLLRSNL 180 (266)
T ss_pred HHHhCCCCEEEEe-cCCCCCCHHHHHHHHHHHHHhc
Confidence 455699999998 8877889999888888876543
No 71
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=91.02 E-value=3.5 Score=44.56 Aligned_cols=145 Identities=17% Similarity=0.159 Sum_probs=83.5
Q ss_pred hhHHHHHhhcccccccEEEecC-----C----------CCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHH
Q 036921 207 KDKEVISSWGVQNKIDFLSLSY-----T----------RHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQ 271 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~sf-----V----------~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~ 271 (527)
.+..+......+.|+|+|=+.+ + ++++.+.++.+.+.+. .+++|++||= + .+.++.+|++
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~---~~~Pv~vKl~-p-~~~~~~~~a~ 187 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG---SRLPVIVKLT-P-NITDIREPAR 187 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc---cCCcEEEEcC-C-CcccHHHHHH
Confidence 3344443333456788876642 2 4556666666666543 3589999993 2 3456667766
Q ss_pred h-----CCEEEE-----eCCC-----------C------cCCCCchhHHHHHHHHHHHHHHc---CCcEEE-ecchhhhh
Q 036921 272 A-----ADGIIL-----SRGN-----------L------GIDLPPEKVFLFQKAALYKCNMA---GKPAVV-TRVVDSMT 320 (527)
Q Consensus 272 ~-----sDgImI-----aRgD-----------L------g~e~~~~~v~~~qk~Ii~~c~~~---gKpvi~-Tq~LeSM~ 320 (527)
+ +|||.+ +|-. | |.=-|....|...+.|-...++. +.|+|- ..+.
T Consensus 188 ~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~---- 263 (420)
T PRK08318 188 AAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIE---- 263 (420)
T ss_pred HHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcC----
Confidence 4 388883 2211 1 11112234455666666666654 679887 6643
Q ss_pred cCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhc
Q 036921 321 DNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKV 373 (527)
Q Consensus 321 ~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~ 373 (527)
...|+..+++.|||+||+..-. -.++- ..+.+|.++.+.+
T Consensus 264 --------s~~da~e~i~aGA~~Vqi~ta~--~~~gp---~ii~~I~~~L~~~ 303 (420)
T PRK08318 264 --------TWRDAAEFILLGAGTVQVCTAA--MQYGF---RIVEDMISGLSHY 303 (420)
T ss_pred --------CHHHHHHHHHhCCChheeeeee--ccCCc---hhHHHHHHHHHHH
Confidence 3468888999999999998333 22222 3344555555444
No 72
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.89 E-value=3.1 Score=46.03 Aligned_cols=128 Identities=17% Similarity=0.165 Sum_probs=82.6
Q ss_pred CCCHhhHHHHHhhcccccccEEEecCCCC-HHHHHHHHHHHHHcCCCCCceEEE-eecChHhHhhHHHHHHhCCEEEEe-
Q 036921 203 TLSDKDKEVISSWGVQNKIDFLSLSYTRH-AEDVRQAREYLSKLGDLSQTQIFA-KIENIEGLTHFDEILQAADGIILS- 279 (527)
Q Consensus 203 ~lt~~D~~di~~~~~~~g~d~I~~sfV~s-~~dv~~lr~~l~~~~~~~~~~Iia-KIEt~~av~nldeI~~~sDgImIa- 279 (527)
.+++++.+.+. ..++.|+|.|++---.- ...+.++.+.++..- .+..||| -|-|.++..++.+ .=+|+|=||
T Consensus 223 ~~~~~~~~~a~-~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~--p~~~v~agnv~t~~~a~~l~~--aGad~v~vgi 297 (479)
T PRK07807 223 GINGDVAAKAR-ALLEAGVDVLVVDTAHGHQEKMLEALRAVRALD--PGVPIVAGNVVTAEGTRDLVE--AGADIVKVGV 297 (479)
T ss_pred ccChhHHHHHH-HHHHhCCCEEEEeccCCccHHHHHHHHHHHHHC--CCCeEEeeccCCHHHHHHHHH--cCCCEEEECc
Confidence 34566667775 45889999988742221 233344334455443 5688999 9999999988766 347988754
Q ss_pred -CCCCcCCCCch----hHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 280 -RGNLGIDLPPE----KVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 280 -RgDLg~e~~~~----~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+|-....-..- .-..+-.++.++|++.|+|+|- ..+ .+ -.|+..|+..|||++|+.
T Consensus 298 g~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi---------~~---~~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 298 GPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGV---------RH---PRDVALALAAGASNVMIG 359 (479)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCC---------CC---HHHHHHHHHcCCCeeecc
Confidence 33222211111 1223445667777788999998 653 22 278899999999999985
No 73
>PRK08227 autoinducer 2 aldolase; Validated
Probab=90.85 E-value=4.8 Score=41.06 Aligned_cols=148 Identities=18% Similarity=0.123 Sum_probs=86.3
Q ss_pred HHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEE
Q 036921 266 FDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAI 344 (527)
Q Consensus 266 ldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~i 344 (527)
+..++.-+|+++.-+|=+....+ ...++|.|+ -.-=.++.. +.+...-+++|-.|+..|+|+|
T Consensus 48 ~~~i~~~~da~~~~~G~~~~~~~---------------~~~~~~lil~ls~~t~~~~-~~~~~~l~~sVeeAvrlGAdAV 111 (264)
T PRK08227 48 IAPLFPYADVLMCTRGILRSVVP---------------PATNKPVVLRASGGNSILK-ELSNEAVAVDMEDAVRLNACAV 111 (264)
T ss_pred HHHHhhcCCEEEeChhHHHhccc---------------ccCCCcEEEEEcCCCCCCC-CCCcccceecHHHHHHCCCCEE
Confidence 56666557999986554322100 234688887 442223332 2244556688999999999999
Q ss_pred EeCCccccCCChHHHHHHHHHHHHHHhhcc-chhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCcHH-
Q 036921 345 LLGAETLRGLYPVETISIVGKICAEAEKVF-NQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRA- 422 (527)
Q Consensus 345 mLs~Eta~G~yP~e~V~~~~~i~~~aE~~~-~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~t- 422 (527)
..+-=-- +.+--+.++.+.+++++++++- .--..+.. .+...+..+ +...|+++|.+++|+.| =...+|.+
T Consensus 112 ~~~v~~G-s~~E~~~l~~l~~v~~ea~~~G~Plla~~pr----G~~~~~~~~-~ia~aaRiaaELGADiV-K~~y~~~~f 184 (264)
T PRK08227 112 AAQVFIG-SEYEHQSIKNIIQLVDAGLRYGMPVMAVTAV----GKDMVRDAR-YFSLATRIAAEMGAQII-KTYYVEEGF 184 (264)
T ss_pred EEEEecC-CHHHHHHHHHHHHHHHHHHHhCCcEEEEecC----CCCcCchHH-HHHHHHHHHHHHcCCEE-ecCCCHHHH
Confidence 8863221 2344677788888888888861 10001111 111123344 66778899999999954 33445644
Q ss_pred HHHHHhhCCCCCEEEE
Q 036921 423 ARLIAKYRPTMPVLSV 438 (527)
Q Consensus 423 A~~is~~RP~~PIiAv 438 (527)
.+.++ .- ++||+.-
T Consensus 185 ~~vv~-a~-~vPVvia 198 (264)
T PRK08227 185 ERITA-GC-PVPIVIA 198 (264)
T ss_pred HHHHH-cC-CCcEEEe
Confidence 44454 33 3688744
No 74
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=90.46 E-value=18 Score=38.44 Aligned_cols=164 Identities=14% Similarity=0.107 Sum_probs=104.7
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEec-CCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHH
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLS-YTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFD 267 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~s-fV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nld 267 (527)
|-|-..|+. .+|..++..|.....+.|+|.|=+. ++.+.++.+.++.+.. .+ .+..+.+-+-. -.+.++
T Consensus 9 RDG~Q~~~~-----~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~--~~~~v~~~~r~--~~~di~ 78 (363)
T TIGR02090 9 RDGEQTPGV-----SLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EG--LNAEICSLARA--LKKDID 78 (363)
T ss_pred CCcCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cC--CCcEEEEEccc--CHHHHH
Confidence 445555554 3577777777666677899999775 4667777766666554 34 45666665531 123344
Q ss_pred HHHHh-CCEEEE--eCCCCc----CCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHH-HHH
Q 036921 268 EILQA-ADGIIL--SRGNLG----IDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVL 338 (527)
Q Consensus 268 eI~~~-sDgImI--aRgDLg----~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n-av~ 338 (527)
..++. .|.|-+ +-.|+- ...+.++........++.|+++|..+.+ -. ...+-+...+.+++. +..
T Consensus 79 ~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~ 152 (363)
T TIGR02090 79 KAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFKRAEE 152 (363)
T ss_pred HHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHHHHHh
Confidence 44433 365444 333331 1234456667777899999999988776 32 223445566666555 466
Q ss_pred hCCcEEEeCCccccCCChHHHHHHHHHHHHH
Q 036921 339 DGSDAILLGAETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 339 ~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
.|+|.|.|. +|.=.-+|.+.-+.++.+...
T Consensus 153 ~g~~~i~l~-DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 153 AGADRINIA-DTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred CCCCEEEEe-CCCCccCHHHHHHHHHHHhcc
Confidence 799999998 677778899988888887654
No 75
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=90.45 E-value=4.6 Score=38.68 Aligned_cols=130 Identities=12% Similarity=0.098 Sum_probs=75.2
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcC---CCCchh
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGI---DLPPEK 291 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~---e~~~~~ 291 (527)
.+.+.|+|+|.++--.+. +..+..+.+...+ +.+..-+......+.+.++...+|.+.++.-+-|. ..+...
T Consensus 75 ~~~~~g~dgv~vh~~~~~-~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~ 149 (211)
T cd00429 75 AFAKAGADIITFHAEATD-HLHRTIQLIKELG----MKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEV 149 (211)
T ss_pred HHHHcCCCEEEECccchh-hHHHHHHHHHHCC----CeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCHHH
Confidence 456999999999877663 3444444444443 34444443323466677777778988776443332 222211
Q ss_pred HHHHHHHHHHHHH--HcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHH
Q 036921 292 VFLFQKAALYKCN--MAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIV 363 (527)
Q Consensus 292 v~~~qk~Ii~~c~--~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~ 363 (527)
+..+ +++-+... ....|+++ ..+ .| .++..+...|+|++...+.-..-..|.++++.+
T Consensus 150 ~~~i-~~~~~~~~~~~~~~pi~v~GGI--------~~-----env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 150 LEKI-RKLRELIPENNLNLLIEVDGGI--------NL-----ETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred HHHH-HHHHHHHHhcCCCeEEEEECCC--------CH-----HHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 1111 11211111 22478877 543 11 456777778999999987776667787776643
No 76
>PRK00915 2-isopropylmalate synthase; Validated
Probab=90.08 E-value=19 Score=40.20 Aligned_cols=165 Identities=12% Similarity=0.117 Sum_probs=108.5
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecC-CCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHH
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSY-TRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFD 267 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sf-V~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nld 267 (527)
|-|-.-|+. .+|..++..|.+...+.|+|.|=+.| .-++.|.+.++.+... . .+..+.+-.-.. .++++
T Consensus 13 RDG~Q~~g~-----~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~-~--~~~~i~a~~r~~--~~did 82 (513)
T PRK00915 13 RDGEQSPGA-----SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIART-V--KNSTVCGLARAV--KKDID 82 (513)
T ss_pred CcCCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhh-C--CCCEEEEEccCC--HHHHH
Confidence 445555554 35777787776666779999998866 5688888888776543 3 456666655321 23344
Q ss_pred HHHHh---C--C--EEEEeCCCCc----CCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHH
Q 036921 268 EILQA---A--D--GIILSRGNLG----IDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN 335 (527)
Q Consensus 268 eI~~~---s--D--gImIaRgDLg----~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n 335 (527)
..+++ + + .++++-.|+- .....+++.....+.++.|+++|.-|.+ .. ...+-+...+.+++.
T Consensus 83 ~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e------d~~r~d~~~l~~~~~ 156 (513)
T PRK00915 83 AAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE------DATRTDLDFLCRVVE 156 (513)
T ss_pred HHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC------CCCCCCHHHHHHHHH
Confidence 44422 2 2 3555555552 2344567777788999999999998877 43 122223344556665
Q ss_pred H-HHhCCcEEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 336 A-VLDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 336 a-v~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
+ ...|+|.+.|. +|.=+-.|.+.-+++..+.+..
T Consensus 157 ~~~~~Ga~~i~l~-DTvG~~~P~~~~~~i~~l~~~~ 191 (513)
T PRK00915 157 AAIDAGATTINIP-DTVGYTTPEEFGELIKTLRERV 191 (513)
T ss_pred HHHHcCCCEEEEc-cCCCCCCHHHHHHHHHHHHHhC
Confidence 4 45699999997 8888889999999988887653
No 77
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=90.03 E-value=9.1 Score=38.76 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 233 EDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 233 ~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
+.++.++++..+.| +.+++-+-+.+.++-+.+ ..|.+.||-+++- |..+++++.+.||||++
T Consensus 66 ~gl~~L~~~~~~~G----l~~~Tev~d~~~v~~~~e---~vdilqIgs~~~~-----------n~~LL~~va~tgkPVil 127 (250)
T PRK13397 66 QGIRYLHEVCQEFG----LLSVSEIMSERQLEEAYD---YLDVIQVGARNMQ-----------NFEFLKTLSHIDKPILF 127 (250)
T ss_pred HHHHHHHHHHHHcC----CCEEEeeCCHHHHHHHHh---cCCEEEECccccc-----------CHHHHHHHHccCCeEEE
Confidence 44666666666544 788998877777655544 6999999977764 35677888889999999
Q ss_pred -ecchhhhhcCCCCChHhhhhHHHHHH-hCCcEEEeC
Q 036921 313 -TRVVDSMTDNLRPTRAEATDVANAVL-DGSDAILLG 347 (527)
Q Consensus 313 -Tq~LeSM~~~p~PtraEv~Dv~nav~-~g~D~imLs 347 (527)
|.+ .+|-.|+-..+..+. .|..=++|.
T Consensus 128 k~G~--------~~t~~e~~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 128 KRGL--------MATIEEYLGALSYLQDTGKSNIILC 156 (250)
T ss_pred eCCC--------CCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 663 467889988888776 577667776
No 78
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=89.93 E-value=16 Score=40.55 Aligned_cols=164 Identities=10% Similarity=0.098 Sum_probs=105.7
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecC-CCCHHHHHHHHHHHHHcCCCCCceEEEeec-ChHhHhhH
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSY-TRHAEDVRQAREYLSKLGDLSQTQIFAKIE-NIEGLTHF 266 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sf-V~s~~dv~~lr~~l~~~~~~~~~~IiaKIE-t~~av~nl 266 (527)
|-|-..|+.. +|..++..|.+...+.|+|.|=+.| +.++.|.+.++.+... . .+..+.+-.- +.+.++..
T Consensus 10 RDG~Q~~g~~-----~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~-~--~~~~i~al~r~~~~did~a 81 (494)
T TIGR00973 10 RDGEQSPGAS-----LTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIART-V--KNPRVCGLARCVEKDIDAA 81 (494)
T ss_pred CccCcCCCCC-----cCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHh-C--CCCEEEEEcCCCHHhHHHH
Confidence 4455556653 5777887776666678999998755 6678888888776543 3 4456666553 23333322
Q ss_pred HHHHHh--CCEE--EEeCCCCcC----CCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHh---hhhHH
Q 036921 267 DEILQA--ADGI--ILSRGNLGI----DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAE---ATDVA 334 (527)
Q Consensus 267 deI~~~--sDgI--mIaRgDLg~----e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraE---v~Dv~ 334 (527)
-+-+.- .+.| ++.-.|+-. ....+++.......++.|+++|.-+.+ .. ..+|++ +.+++
T Consensus 82 ~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~E---------d~~r~d~~~l~~~~ 152 (494)
T TIGR00973 82 AEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCE---------DAGRTEIPFLARIV 152 (494)
T ss_pred HHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcC---------CCCCCCHHHHHHHH
Confidence 222211 2433 333334332 233467777788999999999988776 43 344444 44555
Q ss_pred H-HHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 335 N-AVLDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 335 n-av~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
. +...|+|.+.|. +|.=+-.|.+.-+.+..+.+..
T Consensus 153 ~~~~~~Ga~~i~l~-DTvG~~~P~~~~~~i~~l~~~~ 188 (494)
T TIGR00973 153 EAAINAGATTINIP-DTVGYALPAEYGNLIKGLRENV 188 (494)
T ss_pred HHHHHcCCCEEEeC-CCCCCCCHHHHHHHHHHHHHhh
Confidence 5 456699999998 8888889999988888887653
No 79
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=89.85 E-value=1.2 Score=51.40 Aligned_cols=87 Identities=20% Similarity=0.232 Sum_probs=73.7
Q ss_pred EEecCCCCHHHHHHHHHHHHHcCCC----CCceEEEeecChHhHhhHHHHHHh-----------CC-----EEEEeCCCC
Q 036921 224 LSLSYTRHAEDVRQAREYLSKLGDL----SQTQIFAKIENIEGLTHFDEILQA-----------AD-----GIILSRGNL 283 (527)
Q Consensus 224 I~~sfV~s~~dv~~lr~~l~~~~~~----~~~~IiaKIEt~~av~nldeI~~~-----------sD-----gImIaRgDL 283 (527)
.++|+.+|+.||.++-=++++.|.. .++.|+.--||.+-++|..+|+.. .+ -||+|-.|=
T Consensus 489 yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvPLFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDS 568 (910)
T COG2352 489 YIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVPLFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDS 568 (910)
T ss_pred hhhhccCCHHHHHHHHHHHHHhCCCCccCCccccccccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEeccccc
Confidence 5899999999999999999999864 568899999999999999999874 12 588888776
Q ss_pred cCCCCc----hhHHHHHHHHHHHHHHcCCcE
Q 036921 284 GIDLPP----EKVFLFQKAALYKCNMAGKPA 310 (527)
Q Consensus 284 g~e~~~----~~v~~~qk~Ii~~c~~~gKpv 310 (527)
.=+=|+ -.+..+|+.+++.|+++|+-.
T Consensus 569 nKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~L 599 (910)
T COG2352 569 NKDGGYLAANWALYKAQLALVELCEKAGVEL 599 (910)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHhCceE
Confidence 666555 378899999999999999764
No 80
>PRK06852 aldolase; Validated
Probab=89.82 E-value=2.1 Score=44.51 Aligned_cols=128 Identities=15% Similarity=0.045 Sum_probs=71.5
Q ss_pred cCCcEEE-ecchhhhhcC--CCCChHhhhhHHHHHHhC------CcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 306 AGKPAVV-TRVVDSMTDN--LRPTRAEATDVANAVLDG------SDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 306 ~gKpvi~-Tq~LeSM~~~--p~PtraEv~Dv~nav~~g------~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
..+|.|+ -.-=.++..+ +.|...-+++|-.|+..| +|||..+-=-- +.+=-+.++-+.+++++++++---
T Consensus 91 ~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~E~~ml~~l~~v~~ea~~~GlP 169 (304)
T PRK06852 91 PDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLG-SEYESEMLSEAAQIIYEAHKHGLI 169 (304)
T ss_pred CCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhCCc
Confidence 3688777 4322222211 146555668899999998 88988753221 234467788888888888876110
Q ss_pred h--hhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEE-C-----CCcHHHHHHHhhCCCCCEEE
Q 036921 377 D--LYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICF-T-----SSGRAARLIAKYRPTMPVLS 437 (527)
Q Consensus 377 ~--~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~-T-----~sG~tA~~is~~RP~~PIiA 437 (527)
- ..|.+- .... .....+ +...|+++|.+++|+.|=+. | .+..+-+.+...-.++||+.
T Consensus 170 ll~~~yprG-~~i~-~~~~~~-~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVvi 235 (304)
T PRK06852 170 AVLWIYPRG-KAVK-DEKDPH-LIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVVC 235 (304)
T ss_pred EEEEeeccC-cccC-CCccHH-HHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEEE
Confidence 0 012110 0011 111234 45556699999999966443 3 12245555555554578664
No 81
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=89.77 E-value=7.5 Score=39.63 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=75.1
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCc-hhHH
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPP-EKVF 293 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~-~~v~ 293 (527)
.+.+.|+|+|++|.. ..++..++.+.+.+.| +..+.-|=-....+.+..|++.++|.+-.=+-.|+ .|. ..++
T Consensus 114 ~~~~aGvdgviipDL-P~ee~~~~~~~~~~~g----i~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~Gv-TG~~~~~~ 187 (263)
T CHL00200 114 KISQAGVKGLIIPDL-PYEESDYLISVCNLYN----IELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGV-TGLKTELD 187 (263)
T ss_pred HHHHcCCeEEEecCC-CHHHHHHHHHHHHHcC----CCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCC-CCCCcccc
Confidence 457999999999976 4588889999898877 33333332223467899999999966543111221 111 3455
Q ss_pred HHHHHHHHHHHHc-CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 294 LFQKAALYKCNMA-GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 294 ~~qk~Ii~~c~~~-gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
.-.+..++..|++ ++|+.+ -.+ =++. ++......|+|++...
T Consensus 188 ~~~~~~i~~ir~~t~~Pi~vGFGI---------~~~e---~~~~~~~~GADGvVVG 231 (263)
T CHL00200 188 KKLKKLIETIKKMTNKPIILGFGI---------STSE---QIKQIKGWNINGIVIG 231 (263)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCc---------CCHH---HHHHHHhcCCCEEEEC
Confidence 5556777777765 899888 552 2333 4455555699999875
No 82
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=89.71 E-value=20 Score=35.67 Aligned_cols=140 Identities=15% Similarity=0.227 Sum_probs=84.1
Q ss_pred HHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEe---CCCCcCC
Q 036921 210 EVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILS---RGNLGID 286 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIa---RgDLg~e 286 (527)
..+..+ .+.|+|.|.+- +++..++.++-+.+++.| ....|.-+=+| .++.+..++...|.|+|= ||-=|-.
T Consensus 76 ~~i~~~-~~~gad~I~~H-~Ea~~~~~~~l~~Ir~~g--~k~GlalnP~T--~~~~i~~~l~~vD~VlvMtV~PGf~GQ~ 149 (223)
T PRK08745 76 RIVPDF-ADAGATTISFH-PEASRHVHRTIQLIKSHG--CQAGLVLNPAT--PVDILDWVLPELDLVLVMSVNPGFGGQA 149 (223)
T ss_pred HHHHHH-HHhCCCEEEEc-ccCcccHHHHHHHHHHCC--CceeEEeCCCC--CHHHHHHHHhhcCEEEEEEECCCCCCcc
Confidence 445434 78999998887 465567777778888888 67778887777 677799999999988882 2222222
Q ss_pred CCchhHHHHHHHHHHHHHHcCCcE--EE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHH
Q 036921 287 LPPEKVFLFQKAALYKCNMAGKPA--VV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIV 363 (527)
Q Consensus 287 ~~~~~v~~~qk~Ii~~c~~~gKpv--i~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~ 363 (527)
+-. ....--+++-+...+++..+ -+ ..+ +.. .+......|+|.+++.+--.....|.++++.+
T Consensus 150 fi~-~~l~KI~~l~~~~~~~~~~~~IeVDGGI----------~~e---ti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~l 215 (223)
T PRK08745 150 FIP-SALDKLRAIRKKIDALGKPIRLEIDGGV----------KAD---NIGAIAAAGADTFVAGSAIFNAPDYAQVIAQM 215 (223)
T ss_pred ccH-HHHHHHHHHHHHHHhcCCCeeEEEECCC----------CHH---HHHHHHHcCCCEEEEChhhhCCCCHHHHHHHH
Confidence 211 11111112222223445443 22 321 222 23445566999999864322223588998888
Q ss_pred HHHHHH
Q 036921 364 GKICAE 369 (527)
Q Consensus 364 ~~i~~~ 369 (527)
++.+.+
T Consensus 216 r~~~~~ 221 (223)
T PRK08745 216 RAAVAA 221 (223)
T ss_pred HHHHHh
Confidence 876543
No 83
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=89.66 E-value=5.7 Score=41.67 Aligned_cols=142 Identities=20% Similarity=0.232 Sum_probs=77.2
Q ss_pred hcccccccEEEecCCC--C-----HHHH-HHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-----CCEEEEeCC
Q 036921 215 WGVQNKIDFLSLSYTR--H-----AEDV-RQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-----ADGIILSRG 281 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~--s-----~~dv-~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-----sDgImIaRg 281 (527)
.+.+.|+|+|-+.+-. . ..+. ..+.+++.......+++|++|+ ++ .+.++.++++. +|||.+.-.
T Consensus 122 ~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl-~p-~~~~~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 122 QIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL-SP-YFSNLANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred HHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEe-CC-CchhHHHHHHHHHHcCCCeEEEECC
Confidence 4456789999884311 1 1111 1233333322111357899997 32 33344555443 388876322
Q ss_pred CCcCCCCc--------------hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEe
Q 036921 282 NLGIDLPP--------------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (527)
Q Consensus 282 DLg~e~~~--------------~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imL 346 (527)
=.+..+.+ .-.+.+.+.+-...+..+.|+|- ..+- -..|+..++..|||+|++
T Consensus 200 ~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~------------s~~Da~e~l~aGA~~V~v 267 (334)
T PRK07565 200 FYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVH------------DAEDVIKMLLAGADVVMI 267 (334)
T ss_pred cCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCC------------CHHHHHHHHHcCCCceee
Confidence 12222211 12344555554445556899887 6542 346788888999999999
Q ss_pred CCccccCCChHHHHHHHHHHHHHHhhccc
Q 036921 347 GAETLRGLYPVETISIVGKICAEAEKVFN 375 (527)
Q Consensus 347 s~Eta~G~yP~e~V~~~~~i~~~aE~~~~ 375 (527)
...--... | +.+.+|+++.+.+..
T Consensus 268 ~t~~~~~g-~----~~~~~i~~~L~~~l~ 291 (334)
T PRK07565 268 ASALLRHG-P----DYIGTILRGLEDWME 291 (334)
T ss_pred ehHHhhhC-c----HHHHHHHHHHHHHHH
Confidence 84433311 3 567777777766543
No 84
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=89.52 E-value=5.2 Score=42.11 Aligned_cols=132 Identities=20% Similarity=0.279 Sum_probs=88.8
Q ss_pred HhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHH----------------HHcCCCCCceEEEeecChHhHhhHHHH
Q 036921 206 DKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYL----------------SKLGDLSQTQIFAKIENIEGLTHFDEI 269 (527)
Q Consensus 206 ~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l----------------~~~~~~~~~~IiaKIEt~~av~nldeI 269 (527)
+.+++.+. .|++.|+|+|+++- +|+..++++- ...+ .....+.+|.+.+..+.+.+.
T Consensus 13 ~~~k~~vt-~AlEsGv~~vvv~~----~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~--~~~~~~v~i~~~~~e~~a~~~ 85 (344)
T PRK02290 13 EERKEVVT-TALESGVDGVVVDE----EDVERVRELGRIKVAADDPDADAVVISGSA--GEDGAYVEIRDKEDEEFAAEL 85 (344)
T ss_pred hhHHHHHH-HHHHcCCCEEEECH----HHhHHHHhhCCeeEEEEcCCcchhhhcccC--CceEEEEEECCHHHHHHHHHh
Confidence 67777786 78999999998864 5666665531 1112 456788899999999999999
Q ss_pred HHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCc
Q 036921 270 LQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE 349 (527)
Q Consensus 270 ~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~E 349 (527)
.+..|-++|--.|- --+|+|.+ |++. ....-++.. .-+..|..=.......|+|+|+|..+
T Consensus 86 ~~~~~~viv~~~dW-~iIPlEnl-------IA~~-~~~~~l~a~----------v~~~~eA~~a~~~LE~G~dGVvl~~~ 146 (344)
T PRK02290 86 AKEVDYVIVEGRDW-TIIPLENL-------IADL-GQSGKIIAG----------VADAEEAKLALEILEKGVDGVLLDPD 146 (344)
T ss_pred hccCCEEEEECCCC-cEecHHHH-------Hhhh-cCCceEEEE----------eCCHHHHHHHHHHhccCCCeEEECCC
Confidence 98888888754454 35677764 4444 333334431 12446666678899999999999976
Q ss_pred cccCCChHHHHHHHHHHHHH
Q 036921 350 TLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 350 ta~G~yP~e~V~~~~~i~~~ 369 (527)
. | ..++-+...+.+
T Consensus 147 d-----~-~ei~~~~~~~~~ 160 (344)
T PRK02290 147 D-----P-NEIKAIVALIEE 160 (344)
T ss_pred C-----H-HHHHHHHHHHhc
Confidence 4 3 334444454543
No 85
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=89.50 E-value=14 Score=37.79 Aligned_cols=153 Identities=14% Similarity=0.168 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 036921 232 AEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAV 311 (527)
Q Consensus 232 ~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi 311 (527)
.+.++.++++..+.| +.+++-+-+...++-+.+ ..|.+-||-+++. +..+++.+.+.||||+
T Consensus 77 ~~gl~~l~~~~~~~G----l~~~te~~d~~~~~~l~~---~vd~~kIga~~~~-----------n~~LL~~~a~~gkPV~ 138 (266)
T PRK13398 77 EEGLKILKEVGDKYN----LPVVTEVMDTRDVEEVAD---YADMLQIGSRNMQ-----------NFELLKEVGKTKKPIL 138 (266)
T ss_pred HHHHHHHHHHHHHcC----CCEEEeeCChhhHHHHHH---hCCEEEECccccc-----------CHHHHHHHhcCCCcEE
Confidence 567888888887655 789998888887766655 4799999977764 2456777778999999
Q ss_pred E-ecchhhhhcCCCCChHhhhhHHHHHH-hCCcEEEe--CCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhccc
Q 036921 312 V-TRVVDSMTDNLRPTRAEATDVANAVL-DGSDAILL--GAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCV 387 (527)
Q Consensus 312 ~-Tq~LeSM~~~p~PtraEv~Dv~nav~-~g~D~imL--s~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~ 387 (527)
+ |.| ..|-.|+-+.+..+. .|..=++| .|=.....||.+.+.+-.-...+ +. +.....|+ ....
T Consensus 139 lk~G~--------~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk-~~-~~~pV~~D--~sHs 206 (266)
T PRK13398 139 LKRGM--------SATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIK-EL-SHLPIIVD--PSHA 206 (266)
T ss_pred EeCCC--------CCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHH-hc-cCCCEEEe--CCCc
Confidence 9 775 346678877777665 57754444 33223458986665543322211 11 11111110 0000
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCcEEEEECC
Q 036921 388 GEPMTHLESIASSAVRAAIKVKASVIICFTS 418 (527)
Q Consensus 388 ~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~ 418 (527)
. ... ..+.....+|...+|+.+++-+.
T Consensus 207 ~---G~~-~~v~~~~~aAva~Ga~Gl~iE~H 233 (266)
T PRK13398 207 T---GRR-ELVIPMAKAAIAAGADGLMIEVH 233 (266)
T ss_pred c---cch-hhHHHHHHHHHHcCCCEEEEecc
Confidence 0 011 23345566677788987776543
No 86
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=89.30 E-value=8.6 Score=37.89 Aligned_cols=133 Identities=12% Similarity=0.104 Sum_probs=78.4
Q ss_pred CCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEee-----------cChHhHhhHHHHH
Q 036921 202 PTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKI-----------ENIEGLTHFDEIL 270 (527)
Q Consensus 202 p~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKI-----------Et~~av~nldeI~ 270 (527)
|..+..|.+.+.+.+.+.|+|.|+++ +-.+...++.+. + ...++.++ .+..-+..+++.+
T Consensus 16 p~~~~~d~~~~~~~~~~~g~~av~v~----~~~~~~~~~~~~--~---~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~ 86 (235)
T cd00958 16 PNPGLEDPEETVKLAAEGGADAVALT----KGIARAYGREYA--G---DIPLIVKLNGSTSLSPKDDNDKVLVASVEDAV 86 (235)
T ss_pred CCccccCHHHHHHHHHhcCCCEEEeC----hHHHHhcccccC--C---CCcEEEEECCCCCCCCCCCCchhhhcCHHHHH
Confidence 45577777766667788899999998 334444433331 1 12233222 1122233456666
Q ss_pred Hh-CCEE--EEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhh-HHHHHHhCCcEEE
Q 036921 271 QA-ADGI--ILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATD-VANAVLDGSDAIL 345 (527)
Q Consensus 271 ~~-sDgI--mIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~D-v~nav~~g~D~im 345 (527)
+. +|++ ++-.|++. ..++...-+++.+.|+++|.|+|+ ...-.-...+ .-+..++.. ...+...|+|.+-
T Consensus 87 ~~Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~-~~~~~~i~~~~~~a~~~GaD~Ik 161 (235)
T cd00958 87 RLGADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKN-EKDPDLIAYAARIGAELGADIVK 161 (235)
T ss_pred HCCCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccC-ccCHHHHHHHHHHHHHHCCCEEE
Confidence 54 4877 55555543 456777788999999999999998 6431000000 012344544 4457788999999
Q ss_pred eCC
Q 036921 346 LGA 348 (527)
Q Consensus 346 Ls~ 348 (527)
.+.
T Consensus 162 ~~~ 164 (235)
T cd00958 162 TKY 164 (235)
T ss_pred ecC
Confidence 863
No 87
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=89.13 E-value=35 Score=36.57 Aligned_cols=166 Identities=14% Similarity=0.165 Sum_probs=103.1
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCC-CHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHH
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTR-HAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFD 267 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~-s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nld 267 (527)
|-|-..|+.. +|..++..|.....+.|+|.|=+.|-. +.++.+.++.+. +.+ .+..+++-.-. -.+.++
T Consensus 13 RDG~Q~~~~~-----~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~-~~~--~~~~i~~~~r~--~~~di~ 82 (378)
T PRK11858 13 RDGEQTPGVV-----FTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIA-KLG--LNASILALNRA--VKSDID 82 (378)
T ss_pred CccCcCCCCC-----CCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHH-hcC--CCeEEEEEccc--CHHHHH
Confidence 4555555543 466777777656667899998775543 344445555543 344 44555555322 133344
Q ss_pred HHHHh-CCEEE--EeCCCC----cCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHH-HHh
Q 036921 268 EILQA-ADGII--LSRGNL----GIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANA-VLD 339 (527)
Q Consensus 268 eI~~~-sDgIm--IaRgDL----g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~na-v~~ 339 (527)
..++. .|.|- +.-.|+ -.....++.....+..++.|++.|..+.++ .....+-+...+.+++.+ ...
T Consensus 83 ~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~-----~ed~~r~~~~~l~~~~~~~~~~ 157 (378)
T PRK11858 83 ASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS-----AEDASRTDLDFLIEFAKAAEEA 157 (378)
T ss_pred HHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE-----eccCCCCCHHHHHHHHHHHHhC
Confidence 44443 35433 343443 112334666677788999999999887762 123344456666666664 456
Q ss_pred CCcEEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 340 GSDAILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 340 g~D~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
|+|.|.|. +|.=.-.|.+.-++++.+.+..
T Consensus 158 Ga~~I~l~-DT~G~~~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 158 GADRVRFC-DTVGILDPFTMYELVKELVEAV 187 (378)
T ss_pred CCCEEEEe-ccCCCCCHHHHHHHHHHHHHhc
Confidence 99999998 8887889999999988887654
No 88
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=88.82 E-value=16 Score=35.28 Aligned_cols=134 Identities=12% Similarity=0.107 Sum_probs=74.6
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCC-c-hhH
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLP-P-EKV 292 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~-~-~~v 292 (527)
.+.+.|+|+|.++.-.+. +..+..+.+...| ..+..-+......+.+.++...+|.+.+..-+-|..-. + ...
T Consensus 79 ~~~~~g~d~v~vh~~~~~-~~~~~~~~~~~~~----~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~ 153 (220)
T PRK05581 79 DFAKAGADIITFHVEASE-HIHRLLQLIKSAG----IKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEV 153 (220)
T ss_pred HHHHcCCCEEEEeeccch-hHHHHHHHHHHcC----CEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHH
Confidence 346999999999987663 4444444455444 34444453233466778888888988776433222211 1 122
Q ss_pred HHHHHHHHHHHHHcCC-c-EEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHH
Q 036921 293 FLFQKAALYKCNMAGK-P-AVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKI 366 (527)
Q Consensus 293 ~~~qk~Ii~~c~~~gK-p-vi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i 366 (527)
..-.+++-..+..++. | +.+ ..+ .| . ++..+...|+|++...+.-..-..|.++++.++++
T Consensus 154 ~~~i~~~~~~~~~~~~~~~i~v~GGI--------~~--~---nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 154 LEKIRELRKLIDERGLDILIEVDGGI--------NA--D---NIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred HHHHHHHHHHHHhcCCCceEEEECCC--------CH--H---HHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 2222233333333333 2 334 332 22 2 44555557999999986655446788887776654
No 89
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=88.82 E-value=12 Score=38.01 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=60.5
Q ss_pred CCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhH----------hhHHHHHH
Q 036921 202 PTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGL----------THFDEILQ 271 (527)
Q Consensus 202 p~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av----------~nldeI~~ 271 (527)
|.-+..|.+.+-..+++.|+|.|+++. --+...+..+ + .++.++.+|++..++ ...++.++
T Consensus 34 p~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~---~--~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~ 104 (267)
T PRK07226 34 PIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY---G--RDVGLIVHLSASTSLSPDPNDKVLVGTVEEAIK 104 (267)
T ss_pred CCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc---C--CCCcEEEEEcCCCCCCCCCCcceeeecHHHHHH
Confidence 334556666555577889999999983 3344333333 1 346788888843333 12455555
Q ss_pred h-CCEEEEe--CCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 272 A-ADGIILS--RGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 272 ~-sDgImIa--RgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
. +|++.+- -|++ ..+++...-+++.+.|+++|.|+++
T Consensus 105 ~Gad~v~~~~~~g~~----~~~~~~~~~~~v~~~~~~~g~pl~v 144 (267)
T PRK07226 105 LGADAVSVHVNVGSE----TEAEMLEDLGEVAEECEEWGMPLLA 144 (267)
T ss_pred cCCCEEEEEEecCCh----hHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 4 4655543 1222 1455666777899999999999887
No 90
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=88.77 E-value=25 Score=34.49 Aligned_cols=194 Identities=20% Similarity=0.209 Sum_probs=111.3
Q ss_pred CCHhhHHHHHhhcccccccEEEec-CCCCHHHHHHHHHHHHHcCCCCCceEEEeec-ChHhHhh-HHHHHHh-CCEEEE-
Q 036921 204 LSDKDKEVISSWGVQNKIDFLSLS-YTRHAEDVRQAREYLSKLGDLSQTQIFAKIE-NIEGLTH-FDEILQA-ADGIIL- 278 (527)
Q Consensus 204 lt~~D~~di~~~~~~~g~d~I~~s-fV~s~~dv~~lr~~l~~~~~~~~~~IiaKIE-t~~av~n-ldeI~~~-sDgImI- 278 (527)
++..++..+.....+.|+|.|=+. ..-+.++.+.++.+..... +..+.+..- ..+.++. ++.+... .|.+.+
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~ 87 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALP---NARLQALCRANEEDIERAVEAAKEAGIDIIRIF 87 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHH---SSEEEEEEESCHHHHHHHHHHHHHTTSSEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhc---ccccceeeeehHHHHHHHHHhhHhccCCEEEec
Confidence 566777777666677899999888 4567777877777665442 234433332 2222333 2222222 264444
Q ss_pred -eCCCCc----CCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHH-hCCcEEEeCCccc
Q 036921 279 -SRGNLG----IDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVL-DGSDAILLGAETL 351 (527)
Q Consensus 279 -aRgDLg----~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~-~g~D~imLs~Eta 351 (527)
.-.|+- ...+.++......++++.++++|..+.+ .. ...+.+..++.+++..+. .|+|.+.|. +|.
T Consensus 88 ~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~ 160 (237)
T PF00682_consen 88 ISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCE------DASRTDPEELLELAEALAEAGADIIYLA-DTV 160 (237)
T ss_dssp EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEET------TTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETT
T ss_pred CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCcc------ccccccHHHHHHHHHHHHHcCCeEEEee-Ccc
Confidence 444411 1123345666778899999999999977 42 223556788888887665 499999997 777
Q ss_pred cCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCc
Q 036921 352 RGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSG 420 (527)
Q Consensus 352 ~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG 420 (527)
=.-.|.++-+.++.+.++.-+ ..-..+.++ +. -+|.+...+|.+.+|+. |=.|-.|
T Consensus 161 G~~~P~~v~~lv~~~~~~~~~-~~l~~H~Hn---------d~--Gla~An~laA~~aGa~~-id~t~~G 216 (237)
T PF00682_consen 161 GIMTPEDVAELVRALREALPD-IPLGFHAHN---------DL--GLAVANALAALEAGADR-IDGTLGG 216 (237)
T ss_dssp S-S-HHHHHHHHHHHHHHSTT-SEEEEEEBB---------TT--S-HHHHHHHHHHTT-SE-EEEBGGG
T ss_pred CCcCHHHHHHHHHHHHHhccC-CeEEEEecC---------Cc--cchhHHHHHHHHcCCCE-EEccCcc
Confidence 777898887777777655432 111111121 11 23455556677788885 3444433
No 91
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=88.72 E-value=1.1 Score=41.72 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHhhCCC-CCEEEEeec
Q 036921 393 HLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKYRPT-MPVLSVVIP 441 (527)
Q Consensus 393 ~~~~ia~~av~~a~~~~a~~Ivv~T~sG~tA~~is~~RP~-~PIiAv~~~ 441 (527)
-++.....|++.|.+++.+-|+|.|.+|+||+.++.+-|. ..|+.||..
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh 60 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHH 60 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEee
Confidence 4667788899999999999999999999999999999987 888888653
No 92
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=88.68 E-value=7.9 Score=39.40 Aligned_cols=126 Identities=16% Similarity=0.125 Sum_probs=72.3
Q ss_pred hhHHHHHhhcccccccEEEecCC-----------CCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh---
Q 036921 207 KDKEVISSWGVQNKIDFLSLSYT-----------RHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA--- 272 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~sfV-----------~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~--- 272 (527)
.|..+..+.+.+.|+|+|-+.+- ++++.+.++.+.+++. -+..|++|+-.....+++.++++.
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~---~~~pv~vKl~~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA---VDIPLLVKLSPYFDLEDIVELAKAAER 187 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc---cCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34433334556779999887541 2455666666656543 257899998765444445555543
Q ss_pred --CCEEEEeCCCCcCC----------------C-CchhHHHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCChHhh
Q 036921 273 --ADGIILSRGNLGID----------------L-PPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEA 330 (527)
Q Consensus 273 --sDgImIaRgDLg~e----------------~-~~~~v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~PtraEv 330 (527)
+|+|.+.-+-.+.. + +..-.+...+.+-+.++.. ++|+|. ..+- ..
T Consensus 188 ~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~------------~~ 255 (289)
T cd02810 188 AGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGID------------SG 255 (289)
T ss_pred cCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCC------------CH
Confidence 48888742211110 0 1111222333444444445 789988 6532 23
Q ss_pred hhHHHHHHhCCcEEEeC
Q 036921 331 TDVANAVLDGSDAILLG 347 (527)
Q Consensus 331 ~Dv~nav~~g~D~imLs 347 (527)
.|+..++..|+|+||+.
T Consensus 256 ~da~~~l~~GAd~V~vg 272 (289)
T cd02810 256 EDVLEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHHHHcCccHheEc
Confidence 56788888999999997
No 93
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=88.66 E-value=4.3 Score=40.32 Aligned_cols=153 Identities=7% Similarity=0.049 Sum_probs=87.2
Q ss_pred CCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHH--Hh
Q 036921 195 SQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEIL--QA 272 (527)
Q Consensus 195 p~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~--~~ 272 (527)
|+..+++--++..=...++ ...+.|+|+|.+-+--+.+.+.+..+.+++.| ..+.|-..-+ ..++.+.+++ ..
T Consensus 64 ~~~~lDvHLm~~~p~~~i~-~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G--~~~gval~p~--t~~e~l~~~l~~~~ 138 (228)
T PTZ00170 64 PNTFLDCHLMVSNPEKWVD-DFAKAGASQFTFHIEATEDDPKAVARKIREAG--MKVGVAIKPK--TPVEVLFPLIDTDL 138 (228)
T ss_pred CCCCEEEEECCCCHHHHHH-HHHHcCCCEEEEeccCCchHHHHHHHHHHHCC--CeEEEEECCC--CCHHHHHHHHccch
Confidence 3443443333322234444 34789999998865444333778888888877 4444444444 4788899998 66
Q ss_pred CCEEEEeCCCCcCCCCchhHH---HHHHHHHHHHHHc-CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 273 ADGIILSRGNLGIDLPPEKVF---LFQKAALYKCNMA-GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 273 sDgImIaRgDLg~e~~~~~v~---~~qk~Ii~~c~~~-gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
.|.|++ ++++-|..... ..-.++-+..+.. ...+.+ ..+ .+ ..+..++..|+|.+++.
T Consensus 139 vD~Vl~----m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGGI--------~~-----~ti~~~~~aGad~iVvG 201 (228)
T PTZ00170 139 VDMVLV----MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGGI--------NL-----ETIDIAADAGANVIVAG 201 (228)
T ss_pred hhhHHh----hhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCCC--------CH-----HHHHHHHHcCCCEEEEc
Confidence 688875 55665543211 1112222222222 223333 221 12 24456777899999987
Q ss_pred CccccCCChHHHHHHHHHHHHH
Q 036921 348 AETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 348 ~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
+--.....|.++++.+++.+++
T Consensus 202 saI~~a~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 202 SSIFKAKDRKQAIELLRESVQK 223 (228)
T ss_pred hHHhCCCCHHHHHHHHHHHHHH
Confidence 5443345799998888776544
No 94
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=88.27 E-value=1.4 Score=51.51 Aligned_cols=93 Identities=17% Similarity=0.156 Sum_probs=71.1
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHHcCCC------CCceEEEeecChHhHhhHHHHHHhC--------------C--EEE
Q 036921 220 KIDFLSLSYTRHAEDVRQAREYLSKLGDL------SQTQIFAKIENIEGLTHFDEILQAA--------------D--GII 277 (527)
Q Consensus 220 g~d~I~~sfV~s~~dv~~lr~~l~~~~~~------~~~~IiaKIEt~~av~nldeI~~~s--------------D--gIm 277 (527)
.+.-.++|+.+++.||.++--+.++.|.. ..+.|+.-.||.+.++|..+|++.- + -||
T Consensus 363 ~~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVM 442 (794)
T PF00311_consen 363 AIGRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVM 442 (794)
T ss_dssp CEEEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEE
T ss_pred hHHHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEE
Confidence 45567999999999999999888777631 2478999999999999999999851 1 799
Q ss_pred EeCCCCcCCCCc----hhHHHHHHHHHHHHHHcCCcEEE
Q 036921 278 LSRGNLGIDLPP----EKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 278 IaRgDLg~e~~~----~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
+|-.|=+=+-|. -.+..+|+++.+.|+++|+.+.+
T Consensus 443 lGYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~ 481 (794)
T PF00311_consen 443 LGYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRF 481 (794)
T ss_dssp EECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEE
T ss_pred eccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 999887777666 48899999999999999999876
No 95
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=88.24 E-value=7.2 Score=43.16 Aligned_cols=121 Identities=20% Similarity=0.216 Sum_probs=73.6
Q ss_pred hHHHHHhhcccccccEEEec--CCCCHHHHHHHHHHHHHcCCCCCce-EEEeecChHhHhhHHHHHHhCCEEEEeCCCCc
Q 036921 208 DKEVISSWGVQNKIDFLSLS--YTRHAEDVRQAREYLSKLGDLSQTQ-IFAKIENIEGLTHFDEILQAADGIILSRGNLG 284 (527)
Q Consensus 208 D~~di~~~~~~~g~d~I~~s--fV~s~~dv~~lr~~l~~~~~~~~~~-IiaKIEt~~av~nldeI~~~sDgImIaRgDLg 284 (527)
+.+.+. ..++.|+|.+.+- .-++ +.+.+..+.+.... .+.. ++.-+-|.+...++.+. =+|+|-+|=|--+
T Consensus 229 ~~e~a~-~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~~--p~~~vi~g~v~t~e~a~~l~~a--Gad~i~vg~g~gs 302 (486)
T PRK05567 229 NEERAE-ALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAKY--PDVQIIAGNVATAEAARALIEA--GADAVKVGIGPGS 302 (486)
T ss_pred hHHHHH-HHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhhC--CCCCEEEeccCCHHHHHHHHHc--CCCEEEECCCCCc
Confidence 355554 4578999987653 2222 33444444444432 2444 66888888887766542 4699987533211
Q ss_pred C-------CCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 285 I-------DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 285 ~-------e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
. ..+.+. ..+-..+.+.|++.++|+|. ..+- --.|++.|+..|||++|+.
T Consensus 303 ~~~~r~~~~~g~p~-~~~~~~~~~~~~~~~~~viadGGi~------------~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 303 ICTTRIVAGVGVPQ-ITAIADAAEAAKKYGIPVIADGGIR------------YSGDIAKALAAGASAVMLG 360 (486)
T ss_pred cccceeecCCCcCH-HHHHHHHHHHhccCCCeEEEcCCCC------------CHHHHHHHHHhCCCEEEEC
Confidence 1 112121 23334556677778999997 6542 2378899999999999985
No 96
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=88.18 E-value=7.9 Score=41.29 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 233 EDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 233 ~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
+..+.++++..+.| +.+++-+-+...++-+.+ ..|.+.||-+++.- ..++..+.+.||||++
T Consensus 169 e~l~~L~~~~~~~G----l~~~t~v~d~~~~~~l~~---~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVil 230 (360)
T PRK12595 169 EGLKILKQVADEYG----LAVISEIVNPADVEVALD---YVDVIQIGARNMQN-----------FELLKAAGRVNKPVLL 230 (360)
T ss_pred HHHHHHHHHHHHcC----CCEEEeeCCHHHHHHHHH---hCCeEEECcccccC-----------HHHHHHHHccCCcEEE
Confidence 45666777776654 788888877777655544 48999999887752 3577788889999999
Q ss_pred -ecchhhhhcCCCCChHhhhhHHHHHH-hCCcEEEeC
Q 036921 313 -TRVVDSMTDNLRPTRAEATDVANAVL-DGSDAILLG 347 (527)
Q Consensus 313 -Tq~LeSM~~~p~PtraEv~Dv~nav~-~g~D~imLs 347 (527)
|.| .+|-.|+...++.+. .|.+-++|.
T Consensus 231 k~G~--------~~t~~e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 231 KRGL--------SATIEEFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred eCCC--------CCCHHHHHHHHHHHHHCCCCCEEEE
Confidence 876 367788888888776 577656665
No 97
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=88.05 E-value=11 Score=39.52 Aligned_cols=126 Identities=17% Similarity=0.279 Sum_probs=72.7
Q ss_pred CHhhHHHHHhhcccccc--cEEEecCCC-CHHHHHHHHHHHHHcCCCCCceEEEe-ecChHhHhhHHHHHHhCCEEEEeC
Q 036921 205 SDKDKEVISSWGVQNKI--DFLSLSYTR-HAEDVRQAREYLSKLGDLSQTQIFAK-IENIEGLTHFDEILQAADGIILSR 280 (527)
Q Consensus 205 t~~D~~di~~~~~~~g~--d~I~~sfV~-s~~dv~~lr~~l~~~~~~~~~~IiaK-IEt~~av~nldeI~~~sDgImIaR 280 (527)
++++.+.+. ..++.|+ |+|.+--.. ..+.+.++.+.+++.- .++.||++ +-|.+...++.+ .=+|++.++=
T Consensus 95 ~~~~~~~~~-~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~--p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~ 169 (326)
T PRK05458 95 KDDEYDFVD-QLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHL--PETFVIAGNVGTPEAVRELEN--AGADATKVGI 169 (326)
T ss_pred CHHHHHHHH-HHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhC--CCCeEEEEecCCHHHHHHHHH--cCcCEEEECC
Confidence 455666665 3478854 999982111 1123333333344332 45789997 999888866654 2369998762
Q ss_pred CCCcC--C---CCchhHHHHHHHHHHHH-HHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCC
Q 036921 281 GNLGI--D---LPPEKVFLFQKAALYKC-NMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA 348 (527)
Q Consensus 281 gDLg~--e---~~~~~v~~~qk~Ii~~c-~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~ 348 (527)
|.=.. + .+. ..+.+|-..+..| +...+|+|- ..+- --.|+..|+..|||++|+.+
T Consensus 170 ~~G~~~~t~~~~g~-~~~~w~l~ai~~~~~~~~ipVIAdGGI~------------~~~Di~KaLa~GA~aV~vG~ 231 (326)
T PRK05458 170 GPGKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGGIR------------THGDIAKSIRFGATMVMIGS 231 (326)
T ss_pred CCCcccccccccCC-CCCccHHHHHHHHHHHcCCCEEEeCCCC------------CHHHHHHHHHhCCCEEEech
Confidence 11111 0 011 1222233233333 335799988 6642 23688999999999999974
No 98
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=88.00 E-value=6.1 Score=41.83 Aligned_cols=133 Identities=20% Similarity=0.273 Sum_probs=86.8
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHH----------------------HHHcCCCCCceEEEeecChHhHhhH
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREY----------------------LSKLGDLSQTQIFAKIENIEGLTHF 266 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~----------------------l~~~~~~~~~~IiaKIEt~~av~nl 266 (527)
++.+. .|++.|+|.|+++- .+.+.++++-+. +...| ........|.+.+.++.+
T Consensus 15 k~~vt-~AlEsGvd~vv~~~-~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~v~i~~~~~~~~a 90 (354)
T PF01959_consen 15 KEVVT-AALESGVDGVVVDD-EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEG--KEVGVYVEITDKEDEEEA 90 (354)
T ss_pred HHHHH-HHHHcCCCEEEECH-hHhhhhhccceEEEEeccccccCCccccchhhhhhhccC--ceEEEEEEECCHHHHHHH
Confidence 66665 78999999999885 333333333111 11122 455578999999999999
Q ss_pred HHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEe
Q 036921 267 DEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (527)
Q Consensus 267 deI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imL 346 (527)
.+..+..|-+++--.|-. -+|+|.+ |++....+.-++. . .-+-.|..=...+...|+|+|+|
T Consensus 91 ~~~~~~~~~~iv~~~Dw~-iIPlEnl-------iA~~~~~~~~i~a-~---------v~~~~eA~~~~~~LE~G~dGVll 152 (354)
T PF01959_consen 91 CELAKRADYVIVEFRDWT-IIPLENL-------IAALQGSSTKIIA-V---------VADAEEARVALEVLEKGVDGVLL 152 (354)
T ss_pred HHHhccCCeEEEEcCCCc-EecHHHH-------HHHhcCCCceEEE-E---------eCCHHHHHHHHHHHhcCCCeEEE
Confidence 999988888887656654 5777765 3333333444443 2 23556677778899999999999
Q ss_pred CCccccCCChHHHHHHHHHHHHH
Q 036921 347 GAETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 347 s~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
..+. | ..++-+...+.+
T Consensus 153 ~~~d-----~-~ei~~~~~~~~~ 169 (354)
T PF01959_consen 153 DPDD-----P-AEIKALVALLKE 169 (354)
T ss_pred CCCC-----H-HHHHHHHHHHhh
Confidence 9764 3 344555555555
No 99
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=87.98 E-value=8.1 Score=37.58 Aligned_cols=128 Identities=14% Similarity=0.219 Sum_probs=73.9
Q ss_pred cccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhh----HHHHHHhC-----CEEEEeCCCCcCC
Q 036921 216 GVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTH----FDEILQAA-----DGIILSRGNLGID 286 (527)
Q Consensus 216 ~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~n----ldeI~~~s-----DgImIaRgDLg~e 286 (527)
+.+.|+|+|.+..--..+.+..+.+.+++.| ..+.+....++..+++. ++.++..+ ||..+.+..
T Consensus 76 ~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g--~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~---- 149 (215)
T PRK13813 76 VFEAGAWGIIVHGFTGRDSLKAVVEAAAESG--GKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAFGVVAPATR---- 149 (215)
T ss_pred HHhCCCCEEEEcCcCCHHHHHHHHHHHHhcC--CeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCCeEEECCCc----
Confidence 4689999999998755566888878787766 45555666666555553 44444322 455433211
Q ss_pred CCchhHHHHHHHHHHHHHHcCCc-EEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHH
Q 036921 287 LPPEKVFLFQKAALYKCNMAGKP-AVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVG 364 (527)
Q Consensus 287 ~~~~~v~~~qk~Ii~~c~~~gKp-vi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~ 364 (527)
++++-.+. +..+.+ .++ -.+ +++-.++..++..|+|.+++..--....-|.++++.|+
T Consensus 150 --~~~i~~l~-------~~~~~~~~ivdgGI-----------~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~ 209 (215)
T PRK13813 150 --PERVRYIR-------SRLGDELKIISPGI-----------GAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAIN 209 (215)
T ss_pred --chhHHHHH-------HhcCCCcEEEeCCc-----------CCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHH
Confidence 22332211 122223 223 211 11211256677789999998755444456999999988
Q ss_pred HHHHH
Q 036921 365 KICAE 369 (527)
Q Consensus 365 ~i~~~ 369 (527)
+.+++
T Consensus 210 ~~~~~ 214 (215)
T PRK13813 210 EEIRG 214 (215)
T ss_pred HHHhc
Confidence 76643
No 100
>PRK15452 putative protease; Provisional
Probab=87.78 E-value=6.4 Score=43.14 Aligned_cols=116 Identities=13% Similarity=0.093 Sum_probs=67.6
Q ss_pred hhHHHHHhhcccccccEEEecC----------CCCHHHHHHHHHHHHHcCCCCCceEEE-eecChHhHhhHHHHH----H
Q 036921 207 KDKEVISSWGVQNKIDFLSLSY----------TRHAEDVRQAREYLSKLGDLSQTQIFA-KIENIEGLTHFDEIL----Q 271 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~sf----------V~s~~dv~~lr~~l~~~~~~~~~~Iia-KIEt~~av~nldeI~----~ 271 (527)
.+.+.++ .|+++|+|.|.+.+ --+.+|++++.++..++| .++.+.. .|=..+-++.+.+.+ +
T Consensus 11 g~~e~l~-aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g--~kvyvt~n~i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 11 GTLKNMR-YAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALG--KKFYVVVNIAPHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred CCHHHHH-HHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcC--CEEEEEecCcCCHHHHHHHHHHHHHHHh
Confidence 4567775 78999999999932 124588888888887776 3333211 122223344444333 3
Q ss_pred h-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 272 A-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 272 ~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
. .|||+|+ |+| ++..+++. +.|+.. ||+- -+-.+.. -.+-..|++.+.||
T Consensus 88 ~gvDgvIV~--d~G--------------~l~~~ke~~p~l~ih~stqln--------i~N~~a~--~f~~~lG~~rvvLS 141 (443)
T PRK15452 88 MKPDALIMS--DPG--------------LIMMVREHFPEMPIHLSVQAN--------AVNWATV--KFWQQMGLTRVILS 141 (443)
T ss_pred CCCCEEEEc--CHH--------------HHHHHHHhCCCCeEEEEeccc--------CCCHHHH--HHHHHCCCcEEEEC
Confidence 3 4999994 554 22344443 778998 9862 1111111 22334578888888
Q ss_pred Cccc
Q 036921 348 AETL 351 (527)
Q Consensus 348 ~Eta 351 (527)
-|-.
T Consensus 142 rELs 145 (443)
T PRK15452 142 RELS 145 (443)
T ss_pred CcCC
Confidence 7753
No 101
>PRK15447 putative protease; Provisional
Probab=87.74 E-value=6.9 Score=40.55 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=75.1
Q ss_pred hhHHHHHhhcccccccEEEecCCC-------CHHHHHHHHHHHHHcCCCCCceE-EEee-cChHhHhhHHHHHHhC-CEE
Q 036921 207 KDKEVISSWGVQNKIDFLSLSYTR-------HAEDVRQAREYLSKLGDLSQTQI-FAKI-ENIEGLTHFDEILQAA-DGI 276 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~sfV~-------s~~dv~~lr~~l~~~~~~~~~~I-iaKI-Et~~av~nldeI~~~s-DgI 276 (527)
...+++-....+.|+|.|-+.... +.+++.++.+.+.++| .++.+ +..| -..+-++.+.++++.. |+|
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~g--kkvyva~p~i~~~~~e~~~l~~~l~~~~~~v 92 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAG--KEVVLSTLALVEAPSELKELRRLVENGEFLV 92 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcC--CEEEEEecccccCHHHHHHHHHHHhcCCCEE
Confidence 345555423236799999997432 6789999999998888 66555 3354 4455667777877764 777
Q ss_pred EEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccc
Q 036921 277 ILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETL 351 (527)
Q Consensus 277 mIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta 351 (527)
++ +|+| .+. .+++.|+|++. ||+= -+-.+..+ ..-..|++.+.||-|-.
T Consensus 93 ~v--~d~g------~l~--------~~~e~~~~l~~d~~ln--------i~N~~a~~--~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 93 EA--NDLG------AVR--------LLAERGLPFVAGPALN--------CYNAATLA--LLARLGATRWCMPVELS 142 (301)
T ss_pred EE--eCHH------HHH--------HHHhcCCCEEEecccc--------cCCHHHHH--HHHHcCCcEEEECCcCC
Confidence 77 4554 222 22334999999 8851 11122222 23345999999998875
No 102
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=87.39 E-value=27 Score=35.86 Aligned_cols=206 Identities=17% Similarity=0.126 Sum_probs=120.0
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccc-cccEEEec-CCCCHHHHHHHHHHHHHc---CCCCCceEEEeecChHhH
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQN-KIDFLSLS-YTRHAEDVRQAREYLSKL---GDLSQTQIFAKIENIEGL 263 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~-g~d~I~~s-fV~s~~dv~~lr~~l~~~---~~~~~~~IiaKIEt~~av 263 (527)
|-|..-|+.. +|.+++..|.+..++. |++.|=+. |.-+++|-+.++++.+.. +......+++.+.+..++
T Consensus 6 RDG~Q~~~~~-----~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 80 (280)
T cd07945 6 RDGEQTSGVS-----FSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSV 80 (280)
T ss_pred CCcCcCCCCc-----cCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHH
Confidence 4555556553 4667777775432355 99999775 558997877777765422 100135677776665544
Q ss_pred hhHHHHHHh-CCEEEEe--CCCCcC----CCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCC-CCChHhhhhHH
Q 036921 264 THFDEILQA-ADGIILS--RGNLGI----DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNL-RPTRAEATDVA 334 (527)
Q Consensus 264 ~nldeI~~~-sDgImIa--RgDLg~----e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p-~PtraEv~Dv~ 334 (527)
+ ..++. .|.|-+. -.|.-. ....++.....+.+++.|+.+|..+.+ -.. ..+| +-+...+.+++
T Consensus 81 ~---~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d----~~~~~r~~~~~~~~~~ 153 (280)
T cd07945 81 D---WIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED----WSNGMRDSPDYVFQLV 153 (280)
T ss_pred H---HHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe----CCCCCcCCHHHHHHHH
Confidence 3 33333 3654442 222211 133467777778899999999988776 321 1122 11344556655
Q ss_pred H-HHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEE
Q 036921 335 N-AVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVI 413 (527)
Q Consensus 335 n-av~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~I 413 (527)
. +...|+|.|.|. +|.=.-.|.+.-++++.+.+.... .....++++ +. -+|.+-...|...+++.
T Consensus 154 ~~~~~~G~~~i~l~-DT~G~~~P~~v~~l~~~l~~~~~~-~~i~~H~Hn---------d~--Gla~AN~laA~~aGa~~- 219 (280)
T cd07945 154 DFLSDLPIKRIMLP-DTLGILSPFETYTYISDMVKRYPN-LHFDFHAHN---------DY--DLAVANVLAAVKAGIKG- 219 (280)
T ss_pred HHHHHcCCCEEEec-CCCCCCCHHHHHHHHHHHHhhCCC-CeEEEEeCC---------CC--CHHHHHHHHHHHhCCCE-
Confidence 5 455699999998 777777899998888887643211 111112221 11 34445555677788884
Q ss_pred EEECCCc
Q 036921 414 ICFTSSG 420 (527)
Q Consensus 414 vv~T~sG 420 (527)
|=-|-.|
T Consensus 220 vd~s~~G 226 (280)
T cd07945 220 LHTTVNG 226 (280)
T ss_pred EEEeccc
Confidence 3445554
No 103
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=87.18 E-value=8.4 Score=41.54 Aligned_cols=128 Identities=13% Similarity=0.085 Sum_probs=82.5
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEE-eecChHhHhhHHHHHHhCCEEEEeC-CCC-cCCCCchh
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFA-KIENIEGLTHFDEILQAADGIILSR-GNL-GIDLPPEK 291 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~Iia-KIEt~~av~nldeI~~~sDgImIaR-gDL-g~e~~~~~ 291 (527)
.+.++|+|++.+..--+.+.+.++.+.+++.| ..+.. .+.....++.++++....|.|++.+ -|= +..-++++
T Consensus 245 ~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~G----ikvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~~~~~~k 320 (391)
T PRK13307 245 MAADATADAVVISGLAPISTIEKAIHEAQKTG----IYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEEGTEHAWGN 320 (391)
T ss_pred HHHhcCCCEEEEeccCCHHHHHHHHHHHHHcC----CEEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCCcccchHHH
Confidence 34799999999998777778898888888776 34444 4444445667777766679888876 222 22222222
Q ss_pred HHHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHH
Q 036921 292 VFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKIC 367 (527)
Q Consensus 292 v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~ 367 (527)
++..++. +.++.+ ..+ + ..++..++..|+|.+.+.+--..-+.|.++++.+.+.+
T Consensus 321 --------I~~ikk~~~~~~I~VdGGI----------~---~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 321 --------IKEIKKAGGKILVAVAGGV----------R---VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred --------HHHHHHhCCCCcEEEECCc----------C---HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 2233332 456666 432 1 23466777789999988754333457999988887765
No 104
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=87.10 E-value=22 Score=37.80 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=99.0
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCC-CHHHHHHHHHHHHHcCCCCCceEEEee-cChHhHhhH
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTR-HAEDVRQAREYLSKLGDLSQTQIFAKI-ENIEGLTHF 266 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~-s~~dv~~lr~~l~~~~~~~~~~IiaKI-Et~~av~nl 266 (527)
|-|-.-|+. .+|..++..|.+...+.|+|.|=+.|-. +..+.+.++.+ .+.+ ....+.+-. -+.+. +
T Consensus 10 RDG~Q~~~~-----~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i-~~~~--~~~~i~~~~r~~~~d---i 78 (365)
T TIGR02660 10 RDGEQAPGV-----AFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAI-VALG--LPARLMAWCRARDAD---I 78 (365)
T ss_pred CCcCcCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHH-HHcC--CCcEEEEEcCCCHHH---H
Confidence 445555543 3577777777666677899999776544 33444455544 3333 345555544 23333 3
Q ss_pred HHHHHh-CCEEEE--eCCCCcC----CCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHH-HHH
Q 036921 267 DEILQA-ADGIIL--SRGNLGI----DLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVAN-AVL 338 (527)
Q Consensus 267 deI~~~-sDgImI--aRgDLg~----e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~n-av~ 338 (527)
+..++. .|.|.+ +-.|+-. ....++.....+..++.++++|..+-++ ....++-+...+.+++. +..
T Consensus 79 ~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~-----~ed~~r~~~~~l~~~~~~~~~ 153 (365)
T TIGR02660 79 EAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG-----GEDASRADPDFLVELAEVAAE 153 (365)
T ss_pred HHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe-----ecCCCCCCHHHHHHHHHHHHH
Confidence 333333 254443 3333211 1233455555678899999999876651 11334445555666655 455
Q ss_pred hCCcEEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 339 DGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 339 ~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
.|+|.|.|. +|.=.-.|.+.-+.++.+.++.
T Consensus 154 ~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 154 AGADRFRFA-DTVGILDPFSTYELVRALRQAV 184 (365)
T ss_pred cCcCEEEEc-ccCCCCCHHHHHHHHHHHHHhc
Confidence 699999997 7877889999999998887654
No 105
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=87.09 E-value=35 Score=34.14 Aligned_cols=139 Identities=13% Similarity=0.111 Sum_probs=85.9
Q ss_pred HHHHHhhcccccccEEEecCCCC-HHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCC
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRH-AEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDL 287 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s-~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~ 287 (527)
...+..+ .++|+|+|.+-+ +. ..++..+-+.+++.| .+..|.-+-.| .++.++.++...|.|+|= +++-
T Consensus 72 ~~~i~~~-~~aGad~it~H~-Ea~~~~~~~~i~~Ik~~G--~kaGlalnP~T--~~~~l~~~l~~vD~VLvM----sV~P 141 (229)
T PRK09722 72 QDYIDQL-ADAGADFITLHP-ETINGQAFRLIDEIRRAG--MKVGLVLNPET--PVESIKYYIHLLDKITVM----TVDP 141 (229)
T ss_pred HHHHHHH-HHcCCCEEEECc-cCCcchHHHHHHHHHHcC--CCEEEEeCCCC--CHHHHHHHHHhcCEEEEE----EEcC
Confidence 3455534 789999988874 54 356777778888888 67788888887 567899999999988882 2332
Q ss_pred Cc---hhHHHHHHHHH---HHHHHcCCcEE--E-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccC--CCh
Q 036921 288 PP---EKVFLFQKAAL---YKCNMAGKPAV--V-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRG--LYP 356 (527)
Q Consensus 288 ~~---~~v~~~qk~Ii---~~c~~~gKpvi--~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G--~yP 356 (527)
|. .-.+..-++|- +...++|..+. + ..+ +.. -+......|+|.+++.+---.| .-|
T Consensus 142 Gf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI----------~~~---~i~~~~~aGad~~V~Gss~iF~~~~d~ 208 (229)
T PRK09722 142 GFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSC----------NQK---TYEKLMEAGADVFIVGTSGLFNLDEDI 208 (229)
T ss_pred CCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCC----------CHH---HHHHHHHcCCCEEEEChHHHcCCCCCH
Confidence 22 11222222222 22234554432 2 321 222 2344566799999886421234 358
Q ss_pred HHHHHHHHHHHHHH
Q 036921 357 VETISIVGKICAEA 370 (527)
Q Consensus 357 ~e~V~~~~~i~~~a 370 (527)
.++++.|++...++
T Consensus 209 ~~~i~~l~~~~~~~ 222 (229)
T PRK09722 209 DEAWDIMTAQIEAA 222 (229)
T ss_pred HHHHHHHHHHHHHh
Confidence 89999998876554
No 106
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=87.00 E-value=14 Score=35.34 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=71.7
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEE---EeecChHhHhhHHHHHH-hCCEEEEeCCCCcCCCCch
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIF---AKIENIEGLTHFDEILQ-AADGIILSRGNLGIDLPPE 290 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~Ii---aKIEt~~av~nldeI~~-~sDgImIaRgDLg~e~~~~ 290 (527)
.+.+.|+|+|.++.-...+.+.++.+.+.+.| ++++ ..-.|+.-+. . ++. -.|.+.+.++--+...+.+
T Consensus 72 ~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g----~~~~v~~~~~~t~~e~~--~-~~~~~~d~v~~~~~~~~~~~~~~ 144 (202)
T cd04726 72 MAFKAGADIVTVLGAAPLSTIKKAVKAAKKYG----KEVQVDLIGVEDPEKRA--K-LLKLGVDIVILHRGIDAQAAGGW 144 (202)
T ss_pred HHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcC----CeEEEEEeCCCCHHHHH--H-HHHCCCCEEEEcCcccccccCCC
Confidence 45799999999998766677788888887665 3443 3445544442 2 444 5698888654211121111
Q ss_pred hHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHH
Q 036921 291 KVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETIS 361 (527)
Q Consensus 291 ~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~ 361 (527)
. ..+.+-+..+....|+.+ ..+ + ..++..+...|+|++.+.+--..-..|.++++
T Consensus 145 ~---~~~~i~~~~~~~~~~i~~~GGI----------~---~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 145 W---PEDDLKKVKKLLGVKVAVAGGI----------T---PDTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred C---CHHHHHHHHhhcCCCEEEECCc----------C---HHHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 1 112222222225788887 432 1 13567788889999998754433344655543
No 107
>PRK09389 (R)-citramalate synthase; Provisional
Probab=86.84 E-value=53 Score=36.53 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=106.3
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEec-CCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHH
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLS-YTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFD 267 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~s-fV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nld 267 (527)
|-|-.-|+.. +|..++..|.+...+.|+|.|=+. ++.++.|.+.++.+.. .+ .+..|.+-.-.. .+.++
T Consensus 11 RDG~Q~~g~~-----~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~-~~--~~~~i~a~~r~~--~~di~ 80 (488)
T PRK09389 11 RDGEQTPGVS-----LTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTD-EG--LNAEICSFARAV--KVDID 80 (488)
T ss_pred CCcCCCCCCC-----cCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHh-cC--CCcEEEeecccC--HHHHH
Confidence 4455555553 466777777666678999998774 4678888888877654 33 456777766542 23355
Q ss_pred HHHHh-CCE--EEEeCCCCc----CCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHH-HH
Q 036921 268 EILQA-ADG--IILSRGNLG----IDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANA-VL 338 (527)
Q Consensus 268 eI~~~-sDg--ImIaRgDLg----~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~na-v~ 338 (527)
..++. .|. ++++-.|+- .....++....-...++.|+++|..+.+ -. ...+-+..-+.+++.+ ..
T Consensus 81 ~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e------d~~r~~~~~l~~~~~~~~~ 154 (488)
T PRK09389 81 AALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE------DASRADLDFLKELYKAGIE 154 (488)
T ss_pred HHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe------eCCCCCHHHHHHHHHHHHh
Confidence 55543 254 334444442 2233456666667888999999988776 32 2344445556666664 45
Q ss_pred hCCcEEEeCCccccCCChHHHHHHHHHHHHH
Q 036921 339 DGSDAILLGAETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 339 ~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
.|+|.+.|. +|.=...|.+.-++.+.+.+.
T Consensus 155 ~Ga~~i~l~-DTvG~~~P~~~~~lv~~l~~~ 184 (488)
T PRK09389 155 AGADRICFC-DTVGILTPEKTYELFKRLSEL 184 (488)
T ss_pred CCCCEEEEe-cCCCCcCHHHHHHHHHHHHhh
Confidence 699999997 887788999998887776543
No 108
>PLN02321 2-isopropylmalate synthase
Probab=86.83 E-value=30 Score=39.74 Aligned_cols=169 Identities=13% Similarity=0.167 Sum_probs=104.6
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecC-CCCHHHHHHHHHHHHHcC-CCCCceEEEeec-----ChH
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSY-TRHAEDVRQAREYLSKLG-DLSQTQIFAKIE-----NIE 261 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sf-V~s~~dv~~lr~~l~~~~-~~~~~~IiaKIE-----t~~ 261 (527)
|-|-.-|+.. +|.+++..|.+...+.|+|.|=+.| .-|+.|.+.++.+..... ....-..+++|- +.+
T Consensus 95 RDGeQ~~g~~-----~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~ 169 (632)
T PLN02321 95 RDGEQSPGAT-----LTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKK 169 (632)
T ss_pred CccccCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHH
Confidence 5566666664 4667777776566779999998877 677788888777654321 000011223332 334
Q ss_pred hHhhHHHHHHhCC----EEEEeCCCCc----CCCCchhHHHHHHHHHHHHHHcCCc-EEE-ecchhhhhcCCCCChHhhh
Q 036921 262 GLTHFDEILQAAD----GIILSRGNLG----IDLPPEKVFLFQKAALYKCNMAGKP-AVV-TRVVDSMTDNLRPTRAEAT 331 (527)
Q Consensus 262 av~nldeI~~~sD----gImIaRgDLg----~e~~~~~v~~~qk~Ii~~c~~~gKp-vi~-Tq~LeSM~~~p~PtraEv~ 331 (527)
.++..-+=+.-++ .++++-.|+- ..+..+++...-+.+++.|+.+|.. +.+ .. ...+-.+..+.
T Consensus 170 dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~E------Da~rtd~d~l~ 243 (632)
T PLN02321 170 DIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPE------DAGRSDPEFLY 243 (632)
T ss_pred hHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecc------cCCCCCHHHHH
Confidence 4433222111111 3555555552 2345678888889999999999985 444 32 22222334444
Q ss_pred hHHH-HHHhCCcEEEeCCccccCCChHHHHHHHHHHHHH
Q 036921 332 DVAN-AVLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 332 Dv~n-av~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
+++. ++..|+|.|.|. +|.=+..|.+.-+++..+.+.
T Consensus 244 ~~~~~a~~aGa~~I~L~-DTvG~~~P~~v~~li~~l~~~ 281 (632)
T PLN02321 244 RILGEVIKAGATTLNIP-DTVGYTLPSEFGQLIADIKAN 281 (632)
T ss_pred HHHHHHHHcCCCEEEec-ccccCCCHHHHHHHHHHHHHh
Confidence 5555 556799999998 888888999999998888765
No 109
>PRK04302 triosephosphate isomerase; Provisional
Probab=86.59 E-value=17 Score=35.72 Aligned_cols=130 Identities=14% Similarity=0.110 Sum_probs=75.7
Q ss_pred hcccccccEEEecCC---CCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhC-CEEEEeCC-CCcCCCCc
Q 036921 215 WGVQNKIDFLSLSYT---RHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAA-DGIILSRG-NLGIDLPP 289 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV---~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~s-DgImIaRg-DLg~e~~~ 289 (527)
.+.+.|+|+|+++.- ...+++.+..+...+.| +..|.-+-+ .+.+..+.+.. |.|-+.+- -.|...+.
T Consensus 80 ~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~G----l~~I~~v~~---~~~~~~~~~~~~~~I~~~p~~~igt~~~~ 152 (223)
T PRK04302 80 AVKDAGAVGTLINHSERRLTLADIEAVVERAKKLG----LESVVCVNN---PETSAAAAALGPDYVAVEPPELIGTGIPV 152 (223)
T ss_pred HHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCC----CeEEEEcCC---HHHHHHHhcCCCCEEEEeCccccccCCCC
Confidence 446899999999986 34455555555554444 555554444 34455554443 55555443 34443332
Q ss_pred h-hHHHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHH
Q 036921 290 E-KVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIV 363 (527)
Q Consensus 290 ~-~v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~ 363 (527)
. ..+..-+++++..++. +.|++. ..+ = .-.++..+...|+||++..+....-..|.+.++-+
T Consensus 153 ~~~~~~~i~~~~~~ir~~~~~~pvi~GggI---------~---~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 153 SKAKPEVVEDAVEAVKKVNPDVKVLCGAGI---------S---TGEDVKAALELGADGVLLASGVVKAKDPEAALRDL 218 (223)
T ss_pred CcCCHHHHHHHHHHHHhccCCCEEEEECCC---------C---CHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHH
Confidence 1 2234445666667764 678886 442 1 23445566668999999987766666676665543
No 110
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=86.59 E-value=16 Score=34.95 Aligned_cols=128 Identities=15% Similarity=0.174 Sum_probs=74.4
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcC---CCCchh
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGI---DLPPEK 291 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~---e~~~~~ 291 (527)
.+.+.|+|+|.++--.+ ++.....+.+...| .++.+ -++.....+.+.++...+|.+.+..-+-|. ..++..
T Consensus 74 ~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g--~~~~~--~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~ 148 (210)
T TIGR01163 74 DFAEAGADIITVHPEAS-EHIHRLLQLIKDLG--AKAGI--VLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDT 148 (210)
T ss_pred HHHHcCCCEEEEccCCc-hhHHHHHHHHHHcC--CcEEE--EECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHH
Confidence 45699999999876443 45555556666655 33333 355445577788888788998885433222 222222
Q ss_pred HHHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHH
Q 036921 292 VFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETIS 361 (527)
Q Consensus 292 v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~ 361 (527)
+ ..-+++-+..++. ++|+.+ ..+ + ..++..++..|+|++.+.+.-..-.-|.++++
T Consensus 149 ~-~~i~~i~~~~~~~~~~~~i~v~GGI----------~---~env~~l~~~gad~iivgsai~~~~d~~~~~~ 207 (210)
T TIGR01163 149 L-EKIREVRKMIDENGLSILIEVDGGV----------N---DDNARELAEAGADILVAGSAIFGADDYKEVIR 207 (210)
T ss_pred H-HHHHHHHHHHHhcCCCceEEEECCc----------C---HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHH
Confidence 2 2222333334433 357766 542 2 14467777889999999865543345666654
No 111
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=86.20 E-value=1.4 Score=48.51 Aligned_cols=146 Identities=22% Similarity=0.235 Sum_probs=84.6
Q ss_pred ccccEEEecCCCCHHHHHHHHHHHHH----------------c-C--CCCCceEEEeecChHhHhhHHHHHHhC------
Q 036921 219 NKIDFLSLSYTRHAEDVRQAREYLSK----------------L-G--DLSQTQIFAKIENIEGLTHFDEILQAA------ 273 (527)
Q Consensus 219 ~g~d~I~~sfV~s~~dv~~lr~~l~~----------------~-~--~~~~~~IiaKIEt~~av~nldeI~~~s------ 273 (527)
..+-.|++||++|++++..+.+++.. - | .++.+.||.-||+..++-|+++|+..-
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 45778999999999999998765421 1 1 135789999999999999999999852
Q ss_pred C----EEEEeCCCCcCCCCchh----HHHHHHHHHHHHHHcCCcEEE-ecchhhhhc--CCCCChHhhhhHHHHHHhCCc
Q 036921 274 D----GIILSRGNLGIDLPPEK----VFLFQKAALYKCNMAGKPAVV-TRVVDSMTD--NLRPTRAEATDVANAVLDGSD 342 (527)
Q Consensus 274 D----gImIaRgDLg~e~~~~~----v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~--~p~PtraEv~Dv~nav~~g~D 342 (527)
+ -+|+||.|=++..|.-. +-.+-.++-+...+.|.|+.- -.| -|--. +-.|...+ .+.. -.-|..
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~IyPIiG~-GS~PFRG~l~p~~~~--~~~~-EY~gv~ 274 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIYPIIGV-GSPPFRGGLSPPNVE--RVLE-EYPGVY 274 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE--BSSGGGT---TTGHH--HHHH-HTTT-S
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCceeeeecc-CCCCcCCCCChHhHH--HHHH-hcCCee
Confidence 2 79999999999999742 234445566666888998653 221 12222 22333332 2221 123555
Q ss_pred EEEeCCccccCCChHHHHHHHHHHHHH
Q 036921 343 AILLGAETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 343 ~imLs~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
.+-+.+ --.=.||.+-|+-..+.+.+
T Consensus 275 T~TIQS-AfrYD~p~~~v~~ai~~l~~ 300 (491)
T PF14010_consen 275 TFTIQS-AFRYDYPYEEVIKAIEKLNE 300 (491)
T ss_dssp EEEE-H-HHHHTTHHHHHHHHHHHHHH
T ss_pred EEEeee-hhhcCCCHHHHHHHHHHHHh
Confidence 555531 11235777766655555554
No 112
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=85.99 E-value=9.6 Score=35.15 Aligned_cols=113 Identities=17% Similarity=0.158 Sum_probs=65.8
Q ss_pred hcccccccEEEecCCCC------HHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCCcCCC
Q 036921 215 WGVQNKIDFLSLSYTRH------AEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNLGIDL 287 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s------~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDLg~e~ 287 (527)
++.+.|+|+|.++.-.- .+.++++++.+ .+..++.++.......... ..+. .|.+.+..+.-+...
T Consensus 79 ~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~------~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~ 151 (200)
T cd04722 79 AARAAGADGVEIHGAVGYLAREDLELIRELREAV------PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGG 151 (200)
T ss_pred HHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc------CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCC
Confidence 56789999999997763 33344444332 2578888886654433211 1222 499999776554332
Q ss_pred CchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 288 PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 288 ~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
.... +.....+....+..++|++. ..+ -+ -.++..++..|+|++++.
T Consensus 152 ~~~~-~~~~~~~~~~~~~~~~pi~~~GGi---------~~---~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 152 RDAV-PIADLLLILAKRGSKVPVIAGGGI---------ND---PEDAAEALALGADGVIVG 199 (200)
T ss_pred ccCc-hhHHHHHHHHHhcCCCCEEEECCC---------CC---HHHHHHHHHhCCCEEEec
Confidence 2211 11112233334567899998 653 11 245567777799999975
No 113
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=85.63 E-value=13 Score=36.23 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=63.2
Q ss_pred HHHHHhhcccccccEEEec--CCCCH--HHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCC
Q 036921 209 KEVISSWGVQNKIDFLSLS--YTRHA--EDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNL 283 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~s--fV~s~--~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDL 283 (527)
.+.+. .+.+.|+|+|.+- ...++ +++.++.+.+.+. ..+.+++-.-|.+-+ ....+. .|.+.+..+++
T Consensus 78 ~~~v~-~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~---~~i~vi~~v~t~ee~---~~a~~~G~d~i~~~~~g~ 150 (221)
T PRK01130 78 LKEVD-ALAAAGADIIALDATLRPRPDGETLAELVKRIKEY---PGQLLMADCSTLEEG---LAAQKLGFDFIGTTLSGY 150 (221)
T ss_pred HHHHH-HHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC---CCCeEEEeCCCHHHH---HHHHHcCCCEEEcCCcee
Confidence 34554 4689999977653 33333 6667776666652 235677655443322 222222 48887754444
Q ss_pred cCCC--CchhHHHHHHHHHHHHHH-cCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCc
Q 036921 284 GIDL--PPEKVFLFQKAALYKCNM-AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE 349 (527)
Q Consensus 284 g~e~--~~~~v~~~qk~Ii~~c~~-~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~E 349 (527)
...- ....-. ..++..++ .++|++. ..+ -|. .|+..+...|+|++++.+.
T Consensus 151 t~~~~~~~~~~~----~~i~~i~~~~~iPvia~GGI---------~t~---~~~~~~l~~GadgV~iGsa 204 (221)
T PRK01130 151 TEETKKPEEPDF----ALLKELLKAVGCPVIAEGRI---------NTP---EQAKKALELGAHAVVVGGA 204 (221)
T ss_pred ecCCCCCCCcCH----HHHHHHHHhCCCCEEEECCC---------CCH---HHHHHHHHCCCCEEEEchH
Confidence 2211 111111 22232322 3899998 553 222 4566677789999999843
No 114
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=85.21 E-value=19 Score=36.53 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=69.1
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCC-EEEE-eCCCCcCCCCchhH
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAAD-GIIL-SRGNLGIDLPPEKV 292 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sD-gImI-aRgDLg~e~~~~~v 292 (527)
.+.+.|+|+|+++.. ..++..++.+.+++.| -. .+.-+=-....+.+..|++.+| .|++ ++...+-.- ..+
T Consensus 110 ~~~~aGvdgviipDl-p~ee~~~~~~~~~~~g--l~--~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~--~~~ 182 (256)
T TIGR00262 110 KCKEVGVDGVLVADL-PLEESGDLVEAAKKHG--VK--PIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGAR--NRA 182 (256)
T ss_pred HHHHcCCCEEEECCC-ChHHHHHHHHHHHHCC--Cc--EEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCc--ccC
Confidence 457899999999975 4578888888888876 33 2222222234678899999998 3443 442222110 011
Q ss_pred HHHHHHHHHHHHH-cCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 293 FLFQKAALYKCNM-AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 293 ~~~qk~Ii~~c~~-~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
..-....++..|+ .++|+++ ..+ =|.. ++..+...|+|+++..
T Consensus 183 ~~~~~~~i~~lr~~~~~pi~vgfGI---------~~~e---~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 183 ASALNELVKRLKAYSAKPVLVGFGI---------SKPE---QVKQAIDAGADGVIVG 227 (256)
T ss_pred ChhHHHHHHHHHhhcCCCEEEeCCC---------CCHH---HHHHHHHcCCCEEEEC
Confidence 1223344444444 4789888 653 2233 5566677799999876
No 115
>PLN02334 ribulose-phosphate 3-epimerase
Probab=85.10 E-value=28 Score=34.33 Aligned_cols=141 Identities=10% Similarity=0.081 Sum_probs=77.8
Q ss_pred hhHHHHHhhcccccccEEEecCCC-CHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh--CCEEEEeCCCC
Q 036921 207 KDKEVISSWGVQNKIDFLSLSYTR-HAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA--ADGIILSRGNL 283 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~sfV~-s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~--sDgImIaRgDL 283 (527)
.|..++ +.+.|+|+|.+..-+ ..+...+..+.+...| ..+.+...=.| -++.+.++++. .|.|+++.-.=
T Consensus 78 ~d~~~~---~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g--~~iGls~~~~t--~~~~~~~~~~~~~~Dyi~~~~v~p 150 (229)
T PLN02334 78 EDYVPD---FAKAGASIFTFHIEQASTIHLHRLIQQIKSAG--MKAGVVLNPGT--PVEAVEPVVEKGLVDMVLVMSVEP 150 (229)
T ss_pred HHHHHH---HHHcCCCEEEEeeccccchhHHHHHHHHHHCC--CeEEEEECCCC--CHHHHHHHHhccCCCEEEEEEEec
Confidence 454444 378999999777653 2233333333344444 33334332122 34567788888 89887754332
Q ss_pred cCCCCchhH-HHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHH
Q 036921 284 GIDLPPEKV-FLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVET 359 (527)
Q Consensus 284 g~e~~~~~v-~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~ 359 (527)
|..- +.. +....++ +..++. ++|+.+ ..+ |.. ++......|+|++...+.-..-..|.++
T Consensus 151 g~~~--~~~~~~~~~~i-~~~~~~~~~~~I~a~GGI----------~~e---~i~~l~~aGad~vvvgsai~~~~d~~~~ 214 (229)
T PLN02334 151 GFGG--QSFIPSMMDKV-RALRKKYPELDIEVDGGV----------GPS---TIDKAAEAGANVIVAGSAVFGAPDYAEV 214 (229)
T ss_pred CCCc--cccCHHHHHHH-HHHHHhCCCCcEEEeCCC----------CHH---HHHHHHHcCCCEEEEChHHhCCCCHHHH
Confidence 1111 111 1122222 233332 568766 443 333 4455666799999998665444578888
Q ss_pred HHHHHHHHHHH
Q 036921 360 ISIVGKICAEA 370 (527)
Q Consensus 360 V~~~~~i~~~a 370 (527)
++.+.+.+.++
T Consensus 215 ~~~l~~~~~~~ 225 (229)
T PLN02334 215 ISGLRASVEKA 225 (229)
T ss_pred HHHHHHHHHHh
Confidence 88887766543
No 116
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=84.82 E-value=38 Score=32.49 Aligned_cols=135 Identities=13% Similarity=0.151 Sum_probs=74.9
Q ss_pred HHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecCh-HhHhhHHHHHH-hCCEEEEeCCCCcCCCC
Q 036921 211 VISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENI-EGLTHFDEILQ-AADGIILSRGNLGIDLP 288 (527)
Q Consensus 211 di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~-~av~nldeI~~-~sDgImIaRgDLg~e~~ 288 (527)
.++ .+.++|+|+|.+++..+...+.++.+.+.+.| +++++-+-++ .-.+.+....+ -+|.+-+.+|-=+-..+
T Consensus 68 ~~~-~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g----~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~ 142 (206)
T TIGR03128 68 EAE-QAFAAGADIVTVLGVADDATIKGAVKAAKKHG----KEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKG 142 (206)
T ss_pred HHH-HHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC----CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCC
Confidence 454 35799999999888776667788888777765 5666543222 22333344444 46988887652222222
Q ss_pred chhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHH
Q 036921 289 PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKI 366 (527)
Q Consensus 289 ~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i 366 (527)
...+ +.+-+..+....+.+. +. --+.. ++..+...|+|++.+.+.-..-+-|.++++.++++
T Consensus 143 ~~~~----~~i~~l~~~~~~~~i~v~G---------GI~~~---n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 143 QNPF----EDLQTILKLVKEARVAVAG---------GINLD---TIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred CCCH----HHHHHHHHhcCCCcEEEEC---------CcCHH---HHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 1111 1122222222233343 22 11333 34456677999999865543345688887777654
No 117
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=84.79 E-value=16 Score=37.45 Aligned_cols=144 Identities=16% Similarity=0.232 Sum_probs=77.2
Q ss_pred hhHHHHHhhccccc-ccEEEe------------cCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-
Q 036921 207 KDKEVISSWGVQNK-IDFLSL------------SYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA- 272 (527)
Q Consensus 207 ~D~~di~~~~~~~g-~d~I~~------------sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~- 272 (527)
.|.....+.+.+.| +|+|=+ .+-++++.+.++.+.+.+. .++.|++||=- .++++.++++.
T Consensus 104 ~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~---~~~pv~vKl~~--~~~~~~~~a~~l 178 (301)
T PRK07259 104 EEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV---VKVPVIVKLTP--NVTDIVEIAKAA 178 (301)
T ss_pred HHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh---cCCCEEEEcCC--CchhHHHHHHHH
Confidence 44444434556777 999855 2234455666666666543 35789999941 22344444442
Q ss_pred ----CCEEEE-----eCC-CCcC-------CC----CchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhh
Q 036921 273 ----ADGIIL-----SRG-NLGI-------DL----PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEA 330 (527)
Q Consensus 273 ----sDgImI-----aRg-DLg~-------e~----~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv 330 (527)
.|+|.+ ++. |+-. .. |....+...+.+-+..+..+.|+|. ..+- | .
T Consensus 179 ~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~---------~---~ 246 (301)
T PRK07259 179 EEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGIS---------S---A 246 (301)
T ss_pred HHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCC---------C---H
Confidence 388865 211 2210 11 1111222333333334445899998 6642 2 3
Q ss_pred hhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhc
Q 036921 331 TDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKV 373 (527)
Q Consensus 331 ~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~ 373 (527)
.|+..++..|+|+|++..---.| | .+.+++.++-+.+
T Consensus 247 ~da~~~l~aGAd~V~igr~ll~~--P----~~~~~i~~~l~~~ 283 (301)
T PRK07259 247 EDAIEFIMAGASAVQVGTANFYD--P----YAFPKIIEGLEAY 283 (301)
T ss_pred HHHHHHHHcCCCceeEcHHHhcC--c----HHHHHHHHHHHHH
Confidence 56677788899999997443332 3 4455555554443
No 118
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=84.49 E-value=35 Score=31.81 Aligned_cols=126 Identities=18% Similarity=0.139 Sum_probs=73.4
Q ss_pred CHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCC-CceEEEeecC-------hHhHhhHHHHHHh-CCE
Q 036921 205 SDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLS-QTQIFAKIEN-------IEGLTHFDEILQA-ADG 275 (527)
Q Consensus 205 t~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~-~~~IiaKIEt-------~~av~nldeI~~~-sDg 275 (527)
.....+.+.++.++.|+|+|.+.. +-++.+++.. + . ++.+++++=. .+.++..++-.+. +|+
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g----~~i~~~~~~~---~--~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~ 81 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP----GYVRLAADAL---A--GSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADE 81 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH----HHHHHHHHHh---C--CCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 344444444577889999999886 4444444443 2 4 6889999954 4466666665555 599
Q ss_pred EEEeCCCCcCCCC--chhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHH-HHHhCCcEEEeC
Q 036921 276 IILSRGNLGIDLP--PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLG 347 (527)
Q Consensus 276 ImIaRgDLg~e~~--~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n-av~~g~D~imLs 347 (527)
+++... .....+ .+.+...-+.+.+.| +.+.|+++ ..-- .+ .+..++...+. +...|+|++=.+
T Consensus 82 i~v~~~-~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~-~~-----~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 82 IDVVIN-IGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILETR-GL-----KTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred EEEecc-HHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEECC-CC-----CCHHHHHHHHHHHHHhCCCEEEeC
Confidence 998532 111111 345555555666666 56999987 4211 01 12334444433 235799998765
No 119
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=84.40 E-value=42 Score=33.08 Aligned_cols=117 Identities=15% Similarity=0.229 Sum_probs=71.7
Q ss_pred HHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 297 KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
.-+...|+..|.|+++- .|....-..+...-..|++.+...+. .-++.+...+++++-...++-
T Consensus 63 ~alA~~a~~~g~~~~v~----------~p~~~~~~~~~~~~~~Ga~v~~~~~~------~~~~~~~a~~~~~~~~~~~~~ 126 (244)
T cd00640 63 IALAAAAARLGLKCTIV----------MPEGASPEKVAQMRALGAEVVLVPGD------FDDAIALAKELAEEDPGAYYV 126 (244)
T ss_pred HHHHHHHHHcCCCEEEE----------ECCCCCHHHHHHHHHCCCEEEEECCC------HHHHHHHHHHHHHhCCCCEec
Confidence 45667899999998871 13333345555666679998777643 346666666665432111111
Q ss_pred hhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC---CcEEEEECCCcHHHHHHHh----hCCCCCEEEE
Q 036921 377 DLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK---ASVIICFTSSGRAARLIAK----YRPTMPVLSV 438 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~---a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv 438 (527)
.+ | ......+.....+.++.++++ .+.|++.+-+|.++.-+++ ..|...|+++
T Consensus 127 ~~-~--------~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v 186 (244)
T cd00640 127 NQ-F--------DNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGV 186 (244)
T ss_pred CC-C--------CCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEE
Confidence 10 0 011123344455667777765 5899999999999775555 5689999987
No 120
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=83.67 E-value=17 Score=40.19 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=78.3
Q ss_pred CCHhhHHHHHhhcccccccEEEe--cCCCCHHHHHHHHHHHHHcCCCCCceEEEe-ecChHhHhhHHHHHHhCCEEEEeC
Q 036921 204 LSDKDKEVISSWGVQNKIDFLSL--SYTRHAEDVRQAREYLSKLGDLSQTQIFAK-IENIEGLTHFDEILQAADGIILSR 280 (527)
Q Consensus 204 lt~~D~~di~~~~~~~g~d~I~~--sfV~s~~dv~~lr~~l~~~~~~~~~~IiaK-IEt~~av~nldeI~~~sDgImIaR 280 (527)
+.+.+.+-+. ..++.|+|.|++ +.-++ +.+.++.+.+.... .++.||+= +-|.++..++.+ .=+|+|=||=
T Consensus 222 ~~~~~~~ra~-~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~--~~~~vi~g~~~t~~~~~~l~~--~G~d~i~vg~ 295 (475)
T TIGR01303 222 INGDVGGKAK-ALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALD--LGVPIVAGNVVSAEGVRDLLE--AGANIIKVGV 295 (475)
T ss_pred eCccHHHHHH-HHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHC--CCCeEEEeccCCHHHHHHHHH--hCCCEEEECC
Confidence 4556666665 458899999886 44344 34444444455443 46788886 778887766654 2358887542
Q ss_pred C---------CCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCC
Q 036921 281 G---------NLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA 348 (527)
Q Consensus 281 g---------DLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~ 348 (527)
| -.++-.| -..+--...+.|+++|+|+|- ..+ . .-.|++.|+..|||++|+.+
T Consensus 296 g~Gs~~ttr~~~~~g~~---~~~a~~~~~~~~~~~~~~viadGgi---------~---~~~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRP---QFSAVLECAAEARKLGGHVWADGGV---------R---HPRDVALALAAGASNVMVGS 358 (475)
T ss_pred cCCccccCccccCCCCc---hHHHHHHHHHHHHHcCCcEEEeCCC---------C---CHHHHHHHHHcCCCEEeech
Confidence 2 2222111 122333566666888999997 553 2 23799999999999999963
No 121
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=83.60 E-value=29 Score=37.70 Aligned_cols=136 Identities=15% Similarity=0.165 Sum_probs=80.4
Q ss_pred HHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEE-eecChHhHhhHHHHHHh-CCEEEEeCCCCcCCCC
Q 036921 211 VISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFA-KIENIEGLTHFDEILQA-ADGIILSRGNLGIDLP 288 (527)
Q Consensus 211 di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~Iia-KIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~ 288 (527)
++. .+.+.|+|+|.++.-.+...+.++.+.+.+.| +.++. .+-....++.+.+..+. .|.|.+++|--+...+
T Consensus 73 ~v~-~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G----~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~ 147 (430)
T PRK07028 73 EVE-MAAKAGADIVCILGLADDSTIEDAVRAARKYG----VRLMADLINVPDPVKRAVELEELGVDYINVHVGIDQQMLG 147 (430)
T ss_pred HHH-HHHHcCCCEEEEecCCChHHHHHHHHHHHHcC----CEEEEEecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcC
Confidence 454 45899999999764444445666777676665 23333 12222334555666655 6999888764322222
Q ss_pred chhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHH
Q 036921 289 PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKIC 367 (527)
Q Consensus 289 ~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~ 367 (527)
... ....+++. ...+.|+.+ ..+ +. ..+..++..|+|++.+.+.-..-.-|.++++.+++.+
T Consensus 148 ~~~-~~~l~~l~---~~~~iPI~a~GGI----------~~---~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i 210 (430)
T PRK07028 148 KDP-LELLKEVS---EEVSIPIAVAGGL----------DA---ETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAI 210 (430)
T ss_pred CCh-HHHHHHHH---hhCCCcEEEECCC----------CH---HHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHH
Confidence 211 12222222 234689887 542 22 3356677789999998866555567888888777765
Q ss_pred H
Q 036921 368 A 368 (527)
Q Consensus 368 ~ 368 (527)
+
T Consensus 211 ~ 211 (430)
T PRK07028 211 D 211 (430)
T ss_pred h
Confidence 4
No 122
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=83.53 E-value=2.3 Score=45.14 Aligned_cols=53 Identities=15% Similarity=0.297 Sum_probs=45.0
Q ss_pred CCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHH
Q 036921 27 PAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAA 79 (527)
Q Consensus 27 ~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~ 79 (527)
..+-.+-+.+||.-++.|..+.|+++|+|++=|+-+||..+...++++++|+.
T Consensus 94 ~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~ 146 (352)
T PF00478_consen 94 KGRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKK 146 (352)
T ss_dssp TSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHh
Confidence 35677888899998899999999999999999999999999888888877764
No 123
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=83.53 E-value=56 Score=33.47 Aligned_cols=131 Identities=18% Similarity=0.233 Sum_probs=72.4
Q ss_pred cccEEEecC------------CCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-----CCEEEEeC--
Q 036921 220 KIDFLSLSY------------TRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-----ADGIILSR-- 280 (527)
Q Consensus 220 g~d~I~~sf------------V~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-----sDgImIaR-- 280 (527)
++|+|-+.+ -++++.+.++.+.+.+. .+..|.+||- ..+++..++++. .|+|.+.-
T Consensus 118 ~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~---~~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~ 192 (300)
T TIGR01037 118 YVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDK---TDVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTL 192 (300)
T ss_pred ccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh---cCCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccC
Confidence 377776642 24566666666666543 3578999994 123344444432 38998731
Q ss_pred -C---CCc-------CC----CCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEE
Q 036921 281 -G---NLG-------ID----LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAI 344 (527)
Q Consensus 281 -g---DLg-------~e----~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~i 344 (527)
| |+- .. -|....+...+.+-+..+..+.|+|. ..+. ...|+..++..|+|+|
T Consensus 193 ~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~------------s~~da~~~l~~GAd~V 260 (300)
T TIGR01037 193 RGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGIT------------SFEDALEFLMAGASAV 260 (300)
T ss_pred CccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCC------------CHHHHHHHHHcCCCce
Confidence 1 111 01 11112233344444445556899998 6643 2356677888899999
Q ss_pred EeCCccccCCChHHHHHHHHHHHHHHhhc
Q 036921 345 LLGAETLRGLYPVETISIVGKICAEAEKV 373 (527)
Q Consensus 345 mLs~Eta~G~yP~e~V~~~~~i~~~aE~~ 373 (527)
|+....- ..| .+.+++.++.+++
T Consensus 261 ~igr~~l--~~p----~~~~~i~~~l~~~ 283 (300)
T TIGR01037 261 QVGTAVY--YRG----FAFKKIIEGLIAF 283 (300)
T ss_pred eecHHHh--cCc----hHHHHHHHHHHHH
Confidence 9974422 235 3344555554444
No 124
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=83.43 E-value=39 Score=31.51 Aligned_cols=121 Identities=18% Similarity=0.128 Sum_probs=62.0
Q ss_pred CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCC--hHHHHHHHHHHHHHHhhccchhhhhhhh
Q 036921 307 GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLY--PVETISIVGKICAEAEKVFNQDLYFKKT 383 (527)
Q Consensus 307 gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~y--P~e~V~~~~~i~~~aE~~~~~~~~~~~~ 383 (527)
..|+++ +.-.. ...+|+.-+..+..+...|+|++++..-.....- +.+.++..+.++.+++..+.- +
T Consensus 48 ~~~v~~~v~~~~----~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv--~---- 117 (201)
T cd00945 48 DVPVIVVVGFPT----GLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPL--K---- 117 (201)
T ss_pred CCeEEEEecCCC----CCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceE--E----
Confidence 367776 54211 1123455667778888899999999632211100 356677788887765211110 0
Q ss_pred hcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECC------CcHHHHHHHhhC-CCCCEEEE
Q 036921 384 VKCVGEPMTHLESIASSAVRAAIKVKASVIICFTS------SGRAARLIAKYR-PTMPVLSV 438 (527)
Q Consensus 384 ~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~------sG~tA~~is~~R-P~~PIiAv 438 (527)
....+...-..+.+. ..++++...+++.|=..+. +-...+.+.+.. +++||++.
T Consensus 118 iy~~p~~~~~~~~~~-~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 178 (201)
T cd00945 118 VILETRGLKTADEIA-KAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAA 178 (201)
T ss_pred EEEECCCCCCHHHHH-HHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEE
Confidence 000111111233333 3355566778887655443 223333343333 37888876
No 125
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=83.37 E-value=47 Score=35.42 Aligned_cols=101 Identities=20% Similarity=0.219 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 233 EDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 233 ~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
+.++.++++..+. .+.+++-+-+.+.++-+.+ ..|.+-||-+++. +-.+++++.+.||||++
T Consensus 152 ~gl~~L~~~~~e~----Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~-----------n~~LL~~va~t~kPVll 213 (352)
T PRK13396 152 SALELLAAAREAT----GLGIITEVMDAADLEKIAE---VADVIQVGARNMQ-----------NFSLLKKVGAQDKPVLL 213 (352)
T ss_pred HHHHHHHHHHHHc----CCcEEEeeCCHHHHHHHHh---hCCeEEECccccc-----------CHHHHHHHHccCCeEEE
Confidence 4455555555554 4789999988888766655 4799999977664 23457888889999999
Q ss_pred -ecchhhhhcCCCCChHhhhhHHHHHHh-CCcEEEeCCc---cccCCChHHH
Q 036921 313 -TRVVDSMTDNLRPTRAEATDVANAVLD-GSDAILLGAE---TLRGLYPVET 359 (527)
Q Consensus 313 -Tq~LeSM~~~p~PtraEv~Dv~nav~~-g~D~imLs~E---ta~G~yP~e~ 359 (527)
+.| .+|-.|+-..+..+.. |.+-++|.-- |-...||.+.
T Consensus 214 k~G~--------~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~ 257 (352)
T PRK13396 214 KRGM--------AATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNT 257 (352)
T ss_pred eCCC--------CCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCC
Confidence 876 5688999888887764 7776777633 3333577433
No 126
>PRK07695 transcriptional regulator TenI; Provisional
Probab=82.64 E-value=18 Score=34.82 Aligned_cols=125 Identities=13% Similarity=0.112 Sum_probs=72.1
Q ss_pred cccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHH-hCCEEEEeCCCCcCCC---Cchh
Q 036921 216 GVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQ-AADGIILSRGNLGIDL---PPEK 291 (527)
Q Consensus 216 ~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~-~sDgImIaRgDLg~e~---~~~~ 291 (527)
+...|+|+|-++.-. ..+.++|+.+ .+..|-+.+.|.+- +.+..+ -+|.+++++-.-+..- +...
T Consensus 69 a~~~~~~gvHl~~~~--~~~~~~r~~~------~~~~ig~s~~s~e~---a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g 137 (201)
T PRK07695 69 ALLLNIHRVQLGYRS--FSVRSVREKF------PYLHVGYSVHSLEE---AIQAEKNGADYVVYGHVFPTDCKKGVPARG 137 (201)
T ss_pred HHHcCCCEEEeCccc--CCHHHHHHhC------CCCEEEEeCCCHHH---HHHHHHcCCCEEEECCCCCCCCCCCCCCCC
Confidence 467888988888622 2345555433 23345555544332 222222 2488988764332211 1111
Q ss_pred HHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHH
Q 036921 292 VFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICA 368 (527)
Q Consensus 292 v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~ 368 (527)
+ +.+-+.+...++|++. ..+ +. .++..+...|+|++.+.+.-.....|.++++.+.++..
T Consensus 138 ~----~~l~~~~~~~~ipvia~GGI----------~~---~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~ 198 (201)
T PRK07695 138 L----EELSDIARALSIPVIAIGGI----------TP---ENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIK 198 (201)
T ss_pred H----HHHHHHHHhCCCCEEEEcCC----------CH---HHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHh
Confidence 1 1122223345799998 653 22 44566667899999998777766789999998877653
No 127
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=82.64 E-value=31 Score=33.53 Aligned_cols=125 Identities=18% Similarity=0.226 Sum_probs=71.5
Q ss_pred HHHhhcccccccEEEecCCC-CHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCCcCCCC
Q 036921 211 VISSWGVQNKIDFLSLSYTR-HAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNLGIDLP 288 (527)
Q Consensus 211 di~~~~~~~g~d~I~~sfV~-s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~ 288 (527)
.++ .+.+.|+|+|.+.-.. +.++++++.+.....| +..++-+-+.+ .+.++.+. .|.+.+..-|.... +
T Consensus 86 ~v~-~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g----~~~~v~v~~~~---e~~~~~~~g~~~i~~t~~~~~~~-~ 156 (217)
T cd00331 86 QIY-EARAAGADAVLLIVAALDDEQLKELYELARELG----MEVLVEVHDEE---ELERALALGAKIIGINNRDLKTF-E 156 (217)
T ss_pred HHH-HHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC----CeEEEEECCHH---HHHHHHHcCCCEEEEeCCCcccc-C
Confidence 343 4579999999854221 2255555555444444 44455554433 34444444 48888886554322 2
Q ss_pred chhHHHHHHHHHHHHHH--cCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHH
Q 036921 289 PEKVFLFQKAALYKCNM--AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETIS 361 (527)
Q Consensus 289 ~~~v~~~qk~Ii~~c~~--~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~ 361 (527)
. ++ +.+-+.++. .++|++. ..+ =+. .|+..+...|+|++++...-.....|.++++
T Consensus 157 ~-~~----~~~~~l~~~~~~~~pvia~gGI---------~s~---edi~~~~~~Ga~gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 157 V-DL----NTTERLAPLIPKDVILVSESGI---------STP---EDVKRLAEAGADAVLIGESLMRAPDPGAALR 215 (217)
T ss_pred c-CH----HHHHHHHHhCCCCCEEEEEcCC---------CCH---HHHHHHHHcCCCEEEECHHHcCCCCHHHHHH
Confidence 1 22 222333333 4689887 663 233 4556666679999999877666667777765
No 128
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=82.22 E-value=33 Score=35.89 Aligned_cols=145 Identities=17% Similarity=0.181 Sum_probs=80.7
Q ss_pred hHHHHHhhcccccccEEEecCC--C-CH--------HHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh----
Q 036921 208 DKEVISSWGVQNKIDFLSLSYT--R-HA--------EDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA---- 272 (527)
Q Consensus 208 D~~di~~~~~~~g~d~I~~sfV--~-s~--------~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~---- 272 (527)
+..++.+.+.+.|+|+|-+.+- . ++ +.+.++.+.+.+. -+++|++|+- + .+.++.++++.
T Consensus 113 ~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~---~~iPv~vKl~-p-~~~~~~~~a~~l~~~ 187 (325)
T cd04739 113 GWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA---VTIPVAVKLS-P-FFSALAHMAKQLDAA 187 (325)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc---cCCCEEEEcC-C-CccCHHHHHHHHHHc
Confidence 3344433445678998876542 2 11 1223333333332 3579999984 2 24456666654
Q ss_pred -CCEEEE-eCCCCcCCCCc--------------hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHH
Q 036921 273 -ADGIIL-SRGNLGIDLPP--------------EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN 335 (527)
Q Consensus 273 -sDgImI-aRgDLg~e~~~--------------~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n 335 (527)
+|||.+ .|. .+..+.+ ...+...+.+-..++....|+|- ..+. -..|+..
T Consensus 188 Gadgi~~~nt~-~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~------------s~~Da~e 254 (325)
T cd04739 188 GADGLVLFNRF-YQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVH------------DAEDVVK 254 (325)
T ss_pred CCCeEEEEcCc-CCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCC------------CHHHHHH
Confidence 388776 332 1111111 12234444455555556899887 6643 3467889
Q ss_pred HHHhCCcEEEeCCcccc-CCChHHHHHHHHHHHHHHhhccch
Q 036921 336 AVLDGSDAILLGAETLR-GLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 336 av~~g~D~imLs~Eta~-G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
+++.|||+|++...--. | | ..+.+|+++.+.+...
T Consensus 255 ~l~aGA~~Vqv~ta~~~~g--p----~~~~~i~~~L~~~l~~ 290 (325)
T cd04739 255 YLLAGADVVMTTSALLRHG--P----DYIGTLLAGLEAWMEE 290 (325)
T ss_pred HHHcCCCeeEEehhhhhcC--c----hHHHHHHHHHHHHHHH
Confidence 99999999999833222 2 3 3566677777665443
No 129
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=82.16 E-value=65 Score=33.18 Aligned_cols=165 Identities=18% Similarity=0.149 Sum_probs=95.8
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEe-cCCCC-----HHHHHHHHHHHHHcCCCCCceEEEeecChHh
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSL-SYTRH-----AEDVRQAREYLSKLGDLSQTQIFAKIENIEG 262 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~-sfV~s-----~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~a 262 (527)
|-|-.-|+.. ++..++..|.+...+.|++.|=+ ||+.. ..|..++-+.+... ....+.+-.-+.++
T Consensus 13 RDG~Q~~~~~-----~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~---~~~~~~~l~~~~~~ 84 (287)
T PRK05692 13 RDGLQNEKRF-----IPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR---PGVTYAALTPNLKG 84 (287)
T ss_pred CccccCcCCC-----cCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc---CCCeEEEEecCHHH
Confidence 5566666553 46667776665667799999866 45432 12223333333322 23455454445555
Q ss_pred HhhHHHHHHh-CCEE--EEeCCCC----cCCCCchhHHHHHHHHHHHHHHcCCcEEE--ecchhhhhcCCCC---ChHhh
Q 036921 263 LTHFDEILQA-ADGI--ILSRGNL----GIDLPPEKVFLFQKAALYKCNMAGKPAVV--TRVVDSMTDNLRP---TRAEA 330 (527)
Q Consensus 263 v~nldeI~~~-sDgI--mIaRgDL----g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~--Tq~LeSM~~~p~P---traEv 330 (527)
++.. ++. .|.| ++.-.|+ -.....++.....+.+++.++++|..+.. +-.+ ..|.- +.+.+
T Consensus 85 ie~A---~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~----~~~~~~~~~~~~~ 157 (287)
T PRK05692 85 LEAA---LAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVL----GCPYEGEVPPEAV 157 (287)
T ss_pred HHHH---HHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEe----cCCCCCCCCHHHH
Confidence 5332 222 3543 3333333 22334456666778999999999998753 1111 11222 33444
Q ss_pred hhHHH-HHHhCCcEEEeCCccccCCChHHHHHHHHHHHHH
Q 036921 331 TDVAN-AVLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 331 ~Dv~n-av~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
.+++. +...|+|.|.|. +|.=...|.++-++++.+.++
T Consensus 158 ~~~~~~~~~~G~d~i~l~-DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 158 ADVAERLFALGCYEISLG-DTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred HHHHHHHHHcCCcEEEec-cccCccCHHHHHHHHHHHHHh
Confidence 44444 667799999998 676667899999998888754
No 130
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=82.03 E-value=18 Score=36.83 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=74.8
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCc-hhHH
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPP-EKVF 293 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~-~~v~ 293 (527)
.+.+.|+|++++|-.- .|+-.++++.+.+.| +.+|.-|--...-+.+..|++.++|.+=.-+=.|+ .|. ..++
T Consensus 110 ~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g----l~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~Gv-TG~~~~~~ 183 (259)
T PF00290_consen 110 EAKEAGVDGLIIPDLP-PEESEELREAAKKHG----LDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGV-TGSRTELP 183 (259)
T ss_dssp HHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT-----EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSS-SSTTSSCH
T ss_pred HHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC----CeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCC-CCCcccch
Confidence 4568899999999765 466678888887765 55666664546677899999999877654444443 222 3455
Q ss_pred HHHHHHHHHHHHc-CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 294 LFQKAALYKCNMA-GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 294 ~~qk~Ii~~c~~~-gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
.-.+..++..|++ .+|+.+ -.+ =|++.+ .... .|+||++..
T Consensus 184 ~~l~~~i~~ik~~~~~Pv~vGFGI---------~~~e~~---~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 184 DELKEFIKRIKKHTDLPVAVGFGI---------STPEQA---KKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHHHTTSS-EEEESSS----------SHHHH---HHHH-TTSSEEEES
T ss_pred HHHHHHHHHHHhhcCcceEEecCC---------CCHHHH---HHHH-ccCCEEEEC
Confidence 5666777777776 599998 552 344433 3333 799999986
No 131
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=82.00 E-value=61 Score=32.75 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=95.8
Q ss_pred CCHhhHHHHHhhcccccccEEEec-CCCCHHHHHHHHHHHHHcCCCCCceEEEee-cChHhHhhHHHHHHh-----CCEE
Q 036921 204 LSDKDKEVISSWGVQNKIDFLSLS-YTRHAEDVRQAREYLSKLGDLSQTQIFAKI-ENIEGLTHFDEILQA-----ADGI 276 (527)
Q Consensus 204 lt~~D~~di~~~~~~~g~d~I~~s-fV~s~~dv~~lr~~l~~~~~~~~~~IiaKI-Et~~av~nldeI~~~-----sDgI 276 (527)
++..++..+.+...+.|++.|=+- |+.+++|.+.++.+. ... .+..+.+-+ -+..++ +..++. .|.|
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~-~~~--~~~~~~~l~r~~~~~v---~~a~~~~~~~~~~~i 90 (268)
T cd07940 17 LTPEEKLEIARQLDELGVDVIEAGFPAASPGDFEAVKRIA-REV--LNAEICGLARAVKKDI---DAAAEALKPAKVDRI 90 (268)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HhC--CCCEEEEEccCCHhhH---HHHHHhCCCCCCCEE
Confidence 466666666666678999998764 555888876666543 333 456666665 233444 444433 3544
Q ss_pred EE--eCCCCc----CCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHH-HHhCCcEEEeCCc
Q 036921 277 IL--SRGNLG----IDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANA-VLDGSDAILLGAE 349 (527)
Q Consensus 277 mI--aRgDLg----~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~na-v~~g~D~imLs~E 349 (527)
-+ +-.|.- ...+.++....-+.+++.|+++|..+.++- ...++-+...+.+++.. ...|+|.|.|. +
T Consensus 91 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~-----~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-D 164 (268)
T cd07940 91 HTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA-----EDATRTDLDFLIEVVEAAIEAGATTINIP-D 164 (268)
T ss_pred EEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee-----ecCCCCCHHHHHHHHHHHHHcCCCEEEEC-C
Confidence 44 212211 122334455666788999999998766521 12334456666666654 45699999998 7
Q ss_pred cccCCChHHHHHHHHHHHHH
Q 036921 350 TLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 350 ta~G~yP~e~V~~~~~i~~~ 369 (527)
|.=.-+|.+.-+.++.+-+.
T Consensus 165 T~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 165 TVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 76667899998888887654
No 132
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=81.14 E-value=30 Score=33.77 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=65.7
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeec---------------ChHhHhhHHHHHHh-
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIE---------------NIEGLTHFDEILQA- 272 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIE---------------t~~av~nldeI~~~- 272 (527)
.++++ ..++.|+|.|++..- ..++...++++....+ .+ .++.-|. ..+.++.+..+.+.
T Consensus 85 ~e~~~-~~~~~Gad~vvigs~-~l~dp~~~~~i~~~~g--~~-~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 159 (234)
T cd04732 85 LEDIE-RLLDLGVSRVIIGTA-AVKNPELVKELLKEYG--GE-RIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELG 159 (234)
T ss_pred HHHHH-HHHHcCCCEEEECch-HHhChHHHHHHHHHcC--Cc-eEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcC
Confidence 45554 346889999887642 2344445555555544 22 1111111 11222333334333
Q ss_pred CCEEEEe-CCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCcc
Q 036921 273 ADGIILS-RGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET 350 (527)
Q Consensus 273 sDgImIa-RgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Et 350 (527)
+|++++. +.--|..-+ .. .+.+-+.++....|++. ..+ -+.. |+..+...|+|++|+..--
T Consensus 160 a~~iii~~~~~~g~~~g-~~----~~~i~~i~~~~~ipvi~~GGi---------~~~~---di~~~~~~Ga~gv~vg~~~ 222 (234)
T cd04732 160 VKAIIYTDISRDGTLSG-PN----FELYKELAAATGIPVIASGGV---------SSLD---DIKALKELGVAGVIVGKAL 222 (234)
T ss_pred CCEEEEEeecCCCccCC-CC----HHHHHHHHHhcCCCEEEecCC---------CCHH---HHHHHHHCCCCEEEEeHHH
Confidence 5888774 222222222 12 12233334456899998 663 3444 4455555699999998665
Q ss_pred ccCCChHH
Q 036921 351 LRGLYPVE 358 (527)
Q Consensus 351 a~G~yP~e 358 (527)
-.|.++.+
T Consensus 223 ~~~~~~~~ 230 (234)
T cd04732 223 YEGKITLE 230 (234)
T ss_pred HcCCCCHH
Confidence 55655543
No 133
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=80.94 E-value=16 Score=38.76 Aligned_cols=172 Identities=13% Similarity=0.077 Sum_probs=94.7
Q ss_pred cEEEecCCCCHHHHHHHHHHHHHc---CCCCCceEEEeecC------hH------hHhhHHHHHHh-----CCEEEEeCC
Q 036921 222 DFLSLSYTRHAEDVRQAREYLSKL---GDLSQTQIFAKIEN------IE------GLTHFDEILQA-----ADGIILSRG 281 (527)
Q Consensus 222 d~I~~sfV~s~~dv~~lr~~l~~~---~~~~~~~IiaKIEt------~~------av~nldeI~~~-----sDgImIaRg 281 (527)
|-++.+--+++.-...+.+++... + ..+..|++ +.. .. +++|.+.+++. +|+++..+|
T Consensus 36 ~~~~~~~~~~~~~~~rL~Rl~~~g~l~~-tGr~vilp-vDHG~ehGp~~~f~~n~gl~dp~~~i~~a~~~g~dAv~~~~G 113 (348)
T PRK09250 36 DRVMIYSDRNPGVLRNLQRLLNHGRLAG-TGYLSILP-VDQGFEHSAGASFAPNPLYFDPENIVKLAIEAGCNAVASTLG 113 (348)
T ss_pred hhccCcccCCHhHHHHHHHHhcccccCC-CCCEEEEE-cccccccCCccccccCCcccCHHHHHHHHHhcCCCEEEeCHH
Confidence 444555566666677777776430 1 02333333 211 11 66666655553 488887644
Q ss_pred CCcCCCCchhHHHHHHHHHHH-HH--HcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChH
Q 036921 282 NLGIDLPPEKVFLFQKAALYK-CN--MAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPV 357 (527)
Q Consensus 282 DLg~e~~~~~v~~~qk~Ii~~-c~--~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~ 357 (527)
=| +. ++ ...+|.|+ -.-=.|+.....+...-+++|-.|+..|+|||..+-=-- +.+=-
T Consensus 114 ~l-----------------~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~G-s~~E~ 175 (348)
T PRK09250 114 VL-----------------EAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFG-SEESR 175 (348)
T ss_pred HH-----------------HhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecC-CHHHH
Confidence 33 33 11 23588887 443333322223455566889999999999998863221 23335
Q ss_pred HHHHHHHHHHHHHhhccch--hhhhhhhhcccCCCC---ChHHHHHHHHHHHHHhcCCcEEEE
Q 036921 358 ETISIVGKICAEAEKVFNQ--DLYFKKTVKCVGEPM---THLESIASSAVRAAIKVKASVIIC 415 (527)
Q Consensus 358 e~V~~~~~i~~~aE~~~~~--~~~~~~~~~~~~~~~---~~~~~ia~~av~~a~~~~a~~Ivv 415 (527)
+.++.+.+++++++++--. -..|.+- .....+. +..+ +...|+++|.+++|+.|=+
T Consensus 176 ~ml~~l~~i~~ea~~~GlPlv~~~YpRG-~~i~~~~d~~~~~d-~Ia~AaRiaaELGADIVKv 236 (348)
T PRK09250 176 RQIEEISEAFEEAHELGLATVLWSYLRN-SAFKKDGDYHTAAD-LTGQANHLAATIGADIIKQ 236 (348)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEecccC-cccCCcccccccHH-HHHHHHHHHHHHcCCEEEe
Confidence 6777888888888876100 0012110 0011111 1234 5556788999999996643
No 134
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=80.87 E-value=14 Score=38.96 Aligned_cols=141 Identities=12% Similarity=0.076 Sum_probs=92.3
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCC
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLP 288 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~ 288 (527)
.+.|. ...+.|+|.|-+. |.+.++++.++++-.. .+++++|-|-- +--..+.++.+-.|.|=|-||.+|-
T Consensus 37 v~QI~-~L~~aGceiVRva-vp~~~~A~al~~I~~~----~~iPlVADIHF-d~~lAl~a~~~g~dkiRINPGNig~--- 106 (346)
T TIGR00612 37 VAQIR-ALEEAGCDIVRVT-VPDRESAAAFEAIKEG----TNVPLVADIHF-DYRLAALAMAKGVAKVRINPGNIGF--- 106 (346)
T ss_pred HHHHH-HHHHcCCCEEEEc-CCCHHHHHhHHHHHhC----CCCCEEEeeCC-CcHHHHHHHHhccCeEEECCCCCCC---
Confidence 34443 3467899999998 8999999999886652 56999999943 2223356666678999999999986
Q ss_pred chhHHHHHHHHHHHHHHcCCcEEE---ecchhh--hhcCCCCChHhh-----hhHHHHHHhCCcEEEeCCccccCCChHH
Q 036921 289 PEKVFLFQKAALYKCNMAGKPAVV---TRVVDS--MTDNLRPTRAEA-----TDVANAVLDGSDAILLGAETLRGLYPVE 358 (527)
Q Consensus 289 ~~~v~~~qk~Ii~~c~~~gKpvi~---Tq~LeS--M~~~p~PtraEv-----~Dv~nav~~g~D~imLs~Eta~G~yP~e 358 (527)
..--+.++++|+++|+|+=+ ..=|+. |.+...||..-+ ..+.-+-..|++=+.+|--.+ .+..
T Consensus 107 ----~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~KsS---dv~~ 179 (346)
T TIGR00612 107 ----RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKAS---DVAE 179 (346)
T ss_pred ----HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC---CHHH
Confidence 35567899999999999644 444443 223334555333 222234456777777774333 4444
Q ss_pred HHHHHHHH
Q 036921 359 TISIVGKI 366 (527)
Q Consensus 359 ~V~~~~~i 366 (527)
+++.-+.+
T Consensus 180 ~i~ayr~l 187 (346)
T TIGR00612 180 TVAAYRLL 187 (346)
T ss_pred HHHHHHHH
Confidence 44444443
No 135
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=80.39 E-value=34 Score=36.39 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=78.8
Q ss_pred HhhHHHHHhhcccccccEEEecCC----------CCHHHHHHHHHHHHHcCCCCCceEEEee----cChHh-HhhHHHHH
Q 036921 206 DKDKEVISSWGVQNKIDFLSLSYT----------RHAEDVRQAREYLSKLGDLSQTQIFAKI----ENIEG-LTHFDEIL 270 (527)
Q Consensus 206 ~~D~~di~~~~~~~g~d~I~~sfV----------~s~~dv~~lr~~l~~~~~~~~~~IiaKI----Et~~a-v~nldeI~ 270 (527)
..+.++++ .+++.|+|.|-+.+= -+.+|+.+..+++.++| .+..+..-+ +..+. .+-++...
T Consensus 13 ag~l~~l~-~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~g--kk~~V~~N~~~~~~~~~~~~~~l~~l~ 89 (347)
T COG0826 13 AGNLEDLK-AAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAG--KKVYVAVNTLLHNDELETLERYLDRLV 89 (347)
T ss_pred CCCHHHHH-HHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcC--CeEEEEeccccccchhhHHHHHHHHHH
Confidence 34677886 778999999998844 67889999999998888 443332221 22222 23345555
Q ss_pred Hh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcC--CcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEe
Q 036921 271 QA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAG--KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (527)
Q Consensus 271 ~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~g--Kpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imL 346 (527)
+. .|+|++ +|+| ++..|++.+ .|+.+ ||+- +. -++ .+--+-..|+.-++|
T Consensus 90 e~GvDaviv--~Dpg--------------~i~l~~e~~p~l~ih~S~q~~---v~-----N~~--~~~f~~~~G~~rvVl 143 (347)
T COG0826 90 ELGVDAVIV--ADPG--------------LIMLARERGPDLPIHVSTQAN---VT-----NAE--TAKFWKELGAKRVVL 143 (347)
T ss_pred HcCCCEEEE--cCHH--------------HHHHHHHhCCCCcEEEeeeEe---cC-----CHH--HHHHHHHcCCEEEEe
Confidence 44 499999 4665 577888888 99999 9963 12 121 122344569999999
Q ss_pred CCccc
Q 036921 347 GAETL 351 (527)
Q Consensus 347 s~Eta 351 (527)
+.|.+
T Consensus 144 ~rEls 148 (347)
T COG0826 144 PRELS 148 (347)
T ss_pred CccCC
Confidence 98875
No 136
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=80.31 E-value=45 Score=37.82 Aligned_cols=175 Identities=10% Similarity=0.027 Sum_probs=103.7
Q ss_pred CCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHH---HHHHHHcCCCCCceEEEeecChHhH
Q 036921 187 GSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQA---REYLSKLGDLSQTQIFAKIENIEGL 263 (527)
Q Consensus 187 ~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~l---r~~l~~~~~~~~~~IiaKIEt~~av 263 (527)
+++-.|.+-.-.-.-..=++...+.|. ...+.|+|.|-+. |.+.++++.+ ++.+...| .+++++|-|-----+
T Consensus 22 Gg~~PI~vQSMt~t~T~D~~atv~Qi~-~l~~aGceiVRvt-v~~~~~a~~l~~I~~~l~~~G--~~iPLVADIHF~~~~ 97 (611)
T PRK02048 22 GGPNPIRIQSMTNTSTMDTEACVAQAK-RIIDAGGEYVRLT-TQGVREAENLMNINIGLRSQG--YMVPLVADVHFNPKV 97 (611)
T ss_pred CCCCceEEEecCCCCcccHHHHHHHHH-HHHHcCCCEEEEc-CCCHHHHHhHHHHHHHHhhcC--CCCCEEEecCCCcHH
Confidence 555555543322111111344455564 4578999997766 5555555555 55566667 789999999432222
Q ss_pred hhHHHHHHhCCEEEEeCCCCcCCC---------------CchhHHHHHHHHHHHHHHcCCcEEE-ec--chhhhh-cCCC
Q 036921 264 THFDEILQAADGIILSRGNLGIDL---------------PPEKVFLFQKAALYKCNMAGKPAVV-TR--VVDSMT-DNLR 324 (527)
Q Consensus 264 ~nldeI~~~sDgImIaRgDLg~e~---------------~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq--~LeSM~-~~p~ 324 (527)
.+. -++..|.|=|-||.++-.- .++++..--+.++.+|+++|+|+=+ ++ =|+.=+ +.--
T Consensus 98 -A~~-a~~~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i~~~yg 175 (611)
T PRK02048 98 -ADV-AAQYAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRIMSRYG 175 (611)
T ss_pred -HHH-HHHhhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhC
Confidence 122 2233899999999998631 2245556667899999999999765 43 232211 1111
Q ss_pred CChHhh-----hhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHH
Q 036921 325 PTRAEA-----TDVANAVLDGSDAILLGAETLRGLYPVETISIVGKIC 367 (527)
Q Consensus 325 PtraEv-----~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~ 367 (527)
+|..-+ ..+--+-..|++=+.+|--.+.-..++.+.+.+..-+
T Consensus 176 ~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l 223 (611)
T PRK02048 176 DTPEGMVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVM 223 (611)
T ss_pred CChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 333222 2222255679999999977777666666666655544
No 137
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=79.76 E-value=40 Score=34.97 Aligned_cols=101 Identities=21% Similarity=0.261 Sum_probs=65.4
Q ss_pred CCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChH
Q 036921 249 SQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRA 328 (527)
Q Consensus 249 ~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~Ptra 328 (527)
........|.+.+--+-..++...+|.+++---|.. -+|+|++.. . .++.+--++.. .-+..
T Consensus 95 ~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWk-iIPLENlIA------~--l~~e~~kliA~---------V~sae 156 (376)
T COG1465 95 HEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWK-IIPLENLIA------D--LQHEKVKLIAG---------VKSAE 156 (376)
T ss_pred cceEEEEEEcCccchHHHHhhccccceEEEEcCcce-EeeHHHHHH------H--hhccceEEEEE---------eccHH
Confidence 456688889888888888888888897777645554 467776521 1 11122222211 22445
Q ss_pred hhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhc
Q 036921 329 EATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKV 373 (527)
Q Consensus 329 Ev~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~ 373 (527)
|..=....+..|+|+++|.++ .| +-++-...+.+++|+.
T Consensus 157 EA~vA~eTLE~GaDgVll~~~-----d~-~eIk~~~~~~~e~~~E 195 (376)
T COG1465 157 EARVALETLEKGADGVLLDSD-----DP-EEIKKTAEVVEEAESE 195 (376)
T ss_pred HHHHHHHHHhccCceEEeCCC-----CH-HHHHHHHHHHHHhccc
Confidence 555557789999999999865 34 5567777788888743
No 138
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=79.55 E-value=44 Score=37.57 Aligned_cols=170 Identities=14% Similarity=0.111 Sum_probs=109.2
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecC-CCCHHHHHHHHHHHHHcCCCCCceEEEee-cChHhH---
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSY-TRHAEDVRQAREYLSKLGDLSQTQIFAKI-ENIEGL--- 263 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sf-V~s~~dv~~lr~~l~~~~~~~~~~IiaKI-Et~~av--- 263 (527)
|-|-.-|+.. +|..++..|.+...+.|+|.|=+.| .-|+.|...++.+... +. ++..|.+-. -.+..+
T Consensus 10 RDG~Q~~g~~-----~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~-~~-~~~~i~~~~r~~r~~~~~~ 82 (526)
T TIGR00977 10 RDGAQREGVS-----FSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEM-NF-KNAKIVAFCSTRRPHKKVE 82 (526)
T ss_pred CCCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHh-CC-CCcEEEEEeeecCCCCCCc
Confidence 4565666654 5777777776566779999997754 4568888888887643 31 345666655 222222
Q ss_pred --hhHHHHHHhC-CEEEE--eCCCCcC----CCCchhHHHHHHHHHHHHHHcCCcEEE--ecchhhhhcCCCCChHhhhh
Q 036921 264 --THFDEILQAA-DGIIL--SRGNLGI----DLPPEKVFLFQKAALYKCNMAGKPAVV--TRVVDSMTDNLRPTRAEATD 332 (527)
Q Consensus 264 --~nldeI~~~s-DgImI--aRgDLg~----e~~~~~v~~~qk~Ii~~c~~~gKpvi~--Tq~LeSM~~~p~PtraEv~D 332 (527)
..++..+... +.|.+ .-.|+-. ....+++...-...++.++.+|..|.+ ++..+.. +-+...+.+
T Consensus 83 ~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~----r~~~~~l~~ 158 (526)
T TIGR00977 83 EDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY----KANPEYALA 158 (526)
T ss_pred hHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecc----cCCHHHHHH
Confidence 1234444432 54443 3333322 234567777788999999999998865 4443322 123345566
Q ss_pred HHHH-HHhCCcEEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 333 VANA-VLDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 333 v~na-v~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
++.+ ...|+|.+.|. +|.=+..|.+.-..+..+.+..
T Consensus 159 ~~~~a~~aGad~i~i~-DTvG~~~P~~v~~li~~l~~~~ 196 (526)
T TIGR00977 159 TLATAQQAGADWLVLC-DTNGGTLPHEISEITTKVKRSL 196 (526)
T ss_pred HHHHHHhCCCCeEEEe-cCCCCcCHHHHHHHHHHHHHhC
Confidence 6664 55699999998 8888889999999999987654
No 139
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=79.09 E-value=14 Score=35.95 Aligned_cols=143 Identities=23% Similarity=0.260 Sum_probs=83.7
Q ss_pred CCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhh-------HHHHHHh-C
Q 036921 202 PTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTH-------FDEILQA-A 273 (527)
Q Consensus 202 p~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~n-------ldeI~~~-s 273 (527)
|..|+.|.+.+-+.+.+.++|.|+++ +..+..+++.+.. ..+.+-+=+=.+.|-.. .++-++. +
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~----~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GA 83 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG----SGVKVCTVIGFPLGATTTEVKVAEAREAIADGA 83 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC----CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCC
Confidence 66788888877667788899999988 6777777776643 23444444533333222 3444433 4
Q ss_pred CEEEEeCCCCcCCC--CchhHHHHHHHHHHHHHHcCCcE--EE-ecchhhhhcCCCCChHhhhhHHH-HHHhCCcEEEeC
Q 036921 274 DGIILSRGNLGIDL--PPEKVFLFQKAALYKCNMAGKPA--VV-TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLG 347 (527)
Q Consensus 274 DgImIaRgDLg~e~--~~~~v~~~qk~Ii~~c~~~gKpv--i~-Tq~LeSM~~~p~PtraEv~Dv~n-av~~g~D~imLs 347 (527)
|.|-+- -+.|.-. ..+.+..--.++.+.|. |+|+ |+ +..| +..++...+. ++..|+|.|=-|
T Consensus 84 devdvv-~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~~~l---------~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 84 DEIDMV-INIGALKSGDYEAVYEEIAAVVEACG--GAPLKVILETGLL---------TDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred CEEEEe-ecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEEEEecCCC---------CHHHHHHHHHHHHHhCCCEEEcC
Confidence 665542 1111100 11234444455555554 7886 44 4333 3456666555 778899988664
Q ss_pred CccccCCC----hHHHHHHHHHHHH
Q 036921 348 AETLRGLY----PVETISIVGKICA 368 (527)
Q Consensus 348 ~Eta~G~y----P~e~V~~~~~i~~ 368 (527)
.|.. -.+.|+.|+++++
T Consensus 152 ----TG~~~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 152 ----TGFGPGGATVEDVKLMKEAVG 172 (203)
T ss_pred ----CCCCCCCCCHHHHHHHHHHhC
Confidence 4443 2477788888775
No 140
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=78.99 E-value=56 Score=32.69 Aligned_cols=137 Identities=11% Similarity=0.053 Sum_probs=84.0
Q ss_pred hcccccccEEEecCCC----------CHHHHHHHHHHHHHcCCCCCceEEE----------eec---ChHhHhhHHHHHH
Q 036921 215 WGVQNKIDFLSLSYTR----------HAEDVRQAREYLSKLGDLSQTQIFA----------KIE---NIEGLTHFDEILQ 271 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~----------s~~dv~~lr~~l~~~~~~~~~~Iia----------KIE---t~~av~nldeI~~ 271 (527)
++.++|+|+|=+++.. +.+++.++++.+.+.| -.+.-+. .-+ ..++++.+...++
T Consensus 24 ~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G--l~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~ 101 (284)
T PRK13210 24 FAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETG--VRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIR 101 (284)
T ss_pred HHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcC--CCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 5679999999887543 4678999999999887 2222111 001 1346777777777
Q ss_pred hC-----CEEEEeCCCCcCCC----CchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCC
Q 036921 272 AA-----DGIILSRGNLGIDL----PPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGS 341 (527)
Q Consensus 272 ~s-----DgImIaRgDLg~e~----~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~ 341 (527)
.+ +.|.+..++...+- .++.+...-+.+...+.++|..+.+ + |-.+-.++.++..++..++ +.
T Consensus 102 ~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~-----~~~~~~~~~~~~~~l~~~v--~~ 174 (284)
T PRK13210 102 LAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEI-----MDTPFMNSISKWKKWDKEI--DS 174 (284)
T ss_pred HHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEe-----cCccccCCHHHHHHHHHHc--CC
Confidence 64 67766533322111 2245555567788888899987776 4 2233456777787777776 45
Q ss_pred cEEEeCCccc----cCCChHHHH
Q 036921 342 DAILLGAETL----RGLYPVETI 360 (527)
Q Consensus 342 D~imLs~Eta----~G~yP~e~V 360 (527)
+.+-+.-++. .|..|.+.+
T Consensus 175 ~~~~~~~D~~h~~~~~~~~~~~l 197 (284)
T PRK13210 175 PWLTVYPDVGNLSAWGNDVWSEL 197 (284)
T ss_pred CceeEEecCChhhhcCCCHHHHH
Confidence 5555554542 345555443
No 141
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=78.77 E-value=96 Score=33.48 Aligned_cols=149 Identities=14% Similarity=0.187 Sum_probs=85.7
Q ss_pred CCHhhHHHHHhhcccccccEEEecC----C-----------CCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHH
Q 036921 204 LSDKDKEVISSWGVQNKIDFLSLSY----T-----------RHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDE 268 (527)
Q Consensus 204 lt~~D~~di~~~~~~~g~d~I~~sf----V-----------~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nlde 268 (527)
.++.|..++.+..-+.|+|+|-+.+ . ++++-+.++-+.+.+. .++++++||= + -+.++.+
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~---~~iPv~vKLs-P-n~t~i~~ 198 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK---ATVPVWAKMT-P-NITDITQ 198 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh---hcCceEEEeC-C-ChhhHHH
Confidence 3566666665455567899988765 2 4556666665555543 3589999994 2 2334666
Q ss_pred HHHh-----CCEEEEe-----CCCCcCC-------------CC-c---hhHHHHHHHHHHHHHHc------CCcEEE-ec
Q 036921 269 ILQA-----ADGIILS-----RGNLGID-------------LP-P---EKVFLFQKAALYKCNMA------GKPAVV-TR 314 (527)
Q Consensus 269 I~~~-----sDgImIa-----RgDLg~e-------------~~-~---~~v~~~qk~Ii~~c~~~------gKpvi~-Tq 314 (527)
++++ +|||..- +-++-++ .+ + .=-|.+...+-+.+++. +.|+|- ..
T Consensus 199 ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGG 278 (385)
T PLN02495 199 PARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGG 278 (385)
T ss_pred HHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECC
Confidence 6653 3887661 1111001 00 1 11233344333333332 478777 66
Q ss_pred chhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCC-hHHHHHHHHHHHHHHhhccc
Q 036921 315 VVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLY-PVETISIVGKICAEAEKVFN 375 (527)
Q Consensus 315 ~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~y-P~e~V~~~~~i~~~aE~~~~ 375 (527)
+- -..|++.+++.|||+|.+. |+.-.+ | ..+.+|+++.+++..
T Consensus 279 I~------------s~~Da~e~i~aGAs~VQv~--Ta~~~~Gp----~vi~~i~~~L~~~m~ 322 (385)
T PLN02495 279 VE------------TGGDAAEFILLGADTVQVC--TGVMMHGY----PLVKNLCAELQDFMK 322 (385)
T ss_pred CC------------CHHHHHHHHHhCCCceeEe--eeeeecCc----HHHHHHHHHHHHHHH
Confidence 42 4578999999999999998 443344 4 345556666665543
No 142
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=78.40 E-value=22 Score=35.84 Aligned_cols=99 Identities=21% Similarity=0.357 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcE
Q 036921 231 HAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPA 310 (527)
Q Consensus 231 s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpv 310 (527)
+.++..++.++.++.| +..++-.=+.++++-++++ -.+.+=||-+||. .+ .+++.+.+.|||+
T Consensus 54 ~~e~~~~L~~~~~~~g----i~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~------n~-----~lL~~~A~tgkPv 116 (241)
T PF03102_consen 54 SEEQHKELFEYCKELG----IDFFSTPFDEESVDFLEEL--GVPAYKIASGDLT------NL-----PLLEYIAKTGKPV 116 (241)
T ss_dssp -HHHHHHHHHHHHHTT-----EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT-------H-----HHHHHHHTT-S-E
T ss_pred CHHHHHHHHHHHHHcC----CEEEECCCCHHHHHHHHHc--CCCEEEecccccc------CH-----HHHHHHHHhCCcE
Confidence 3455666666665544 4555555455555544333 2688889989986 22 3567788899999
Q ss_pred EE-ecchhhhhcCCCCChHhhhhHHHHH-HhCCcEEEeCCccccCCChH
Q 036921 311 VV-TRVVDSMTDNLRPTRAEATDVANAV-LDGSDAILLGAETLRGLYPV 357 (527)
Q Consensus 311 i~-Tq~LeSM~~~p~PtraEv~Dv~nav-~~g~D~imLs~Eta~G~yP~ 357 (527)
|+ |.| -|-+|+.+..+.+ ..|.+-+.|--= +..||.
T Consensus 117 IlSTG~---------stl~EI~~Av~~~~~~~~~~l~llHC--~s~YP~ 154 (241)
T PF03102_consen 117 ILSTGM---------STLEEIERAVEVLREAGNEDLVLLHC--VSSYPT 154 (241)
T ss_dssp EEE-TT-----------HHHHHHHHHHHHHHCT--EEEEEE---SSSS-
T ss_pred EEECCC---------CCHHHHHHHHHHHHhcCCCCEEEEec--CCCCCC
Confidence 99 985 5788999888888 556554444222 346774
No 143
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=78.39 E-value=26 Score=34.50 Aligned_cols=142 Identities=19% Similarity=0.244 Sum_probs=87.8
Q ss_pred CCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh--------C
Q 036921 202 PTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA--------A 273 (527)
Q Consensus 202 p~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~--------s 273 (527)
|..|+.|.+.+-+.+.++++..|+++ +..+..+++.|. + .++++.+=|=-|.|-...+.-+.. +
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~~a~~~l~--~--~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GA 84 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVN----PSYVPLAKELLK--G--TEVRICTVVGFPLGASTTDVKLYETKEAIKYGA 84 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHHHHHHHcC--C--CCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCC
Confidence 56799888887777888999999884 678889998885 3 568888888666665543322221 3
Q ss_pred CEEEEeCCCCcCCCC------chhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHH-HHHhCCcEEEe
Q 036921 274 DGIILSRGNLGIDLP------PEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILL 346 (527)
Q Consensus 274 DgImIaRgDLg~e~~------~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~n-av~~g~D~imL 346 (527)
|.|=+- +.++ ++.+..-.++|.+.|. |+|+-+ +|| .+.-+..|+..... ++..|+|.|=-
T Consensus 85 dEiDvv-----~n~g~l~~g~~~~v~~ei~~i~~~~~--g~~lKv--IlE----~~~L~~~ei~~a~~ia~eaGADfvKT 151 (211)
T TIGR00126 85 DEVDMV-----INIGALKDGNEEVVYDDIRAVVEACA--GVLLKV--IIE----TGLLTDEEIRKACEICIDAGADFVKT 151 (211)
T ss_pred CEEEee-----cchHhhhCCcHHHHHHHHHHHHHHcC--CCeEEE--EEe----cCCCCHHHHHHHHHHHHHhCCCEEEe
Confidence 433221 2222 2344444445555553 787554 221 11224456655544 67789999866
Q ss_pred CCccccCCC----hHHHHHHHHHHHH
Q 036921 347 GAETLRGLY----PVETISIVGKICA 368 (527)
Q Consensus 347 s~Eta~G~y----P~e~V~~~~~i~~ 368 (527)
| .|.. ..+.|+.|++++.
T Consensus 152 s----TGf~~~gat~~dv~~m~~~v~ 173 (211)
T TIGR00126 152 S----TGFGAGGATVEDVRLMRNTVG 173 (211)
T ss_pred C----CCCCCCCCCHHHHHHHHHHhc
Confidence 5 4432 3678888888775
No 144
>PLN02282 phosphoglycerate kinase
Probab=78.38 E-value=32 Score=37.29 Aligned_cols=306 Identities=14% Similarity=0.129 Sum_probs=162.0
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHH----HHHHHHHHHHHHHHcCCceEEEecCCCCeEEeeeCC
Q 036921 29 MTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEY----HQETLENLKAAVKTTKKLCAVMLDTVGPELQVVNKS 104 (527)
Q Consensus 29 ~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~----~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR~~~~~ 104 (527)
-|+|-+++ .+|+.|++.|..+.= +||-..-. ...+-.-.+..++-++++|...-|.-||+.+-.
T Consensus 39 d~RI~a~l-------pTI~~l~~~gakvVl--~SHlGRP~g~~~~~SL~~va~~Ls~lL~~~V~fv~d~~g~~~~~~--- 106 (401)
T PLN02282 39 DTRIRAAV-------PTIKYLMGHGARVIL--CSHLGRPKGVTPKYSLKPLVPRLSELLGVEVVMANDCIGEEVEKL--- 106 (401)
T ss_pred cHHHHHHH-------HHHHHHHHCCCeEEE--EecCCCCCCCCcccCHHHHHHHHHHHHCCCeEECCCCCCHHHHHH---
Confidence 45666655 489999999987654 48855321 111122223344557888988889999887631
Q ss_pred CCcEEeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEeCcE
Q 036921 105 EKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTAT 184 (527)
Q Consensus 105 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~~G~ 184 (527)
.-.|+.|+.+.|-.-.-..++.. +.++|.+.+..---||++ |.-= + .
T Consensus 107 --i~~l~~G~ilLLEN~RF~~~E~~----~~~~~a~~LA~l~DvyVN----DAFg---~----a---------------- 153 (401)
T PLN02282 107 --VAELPEGGVLLLENVRFYKEEEK----NDPEFAKKLASLADVYVN----DAFG---T----A---------------- 153 (401)
T ss_pred --HhcCCCCCEEEEeccccCccccc----CHHHHHHHHHHhCcEeee----chhh---h----h----------------
Confidence 12467777777764332222221 455677777665448888 6521 1 0
Q ss_pred ecCCCcccccCCccccCC-----CCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCce--EE--E
Q 036921 185 LAGSLFTLHASQIRIELP-----TLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQ--IF--A 255 (527)
Q Consensus 185 l~~~~kgvnlp~~~~~lp-----~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~--Ii--a 255 (527)
-|+.-.+-|...-+| .|=++ ++..+.+++... .++. |+ |
T Consensus 154 ---HR~haS~~gi~~~l~~~~aG~lmek--------------------------El~~L~~~l~~p---~rP~vaIlGGa 201 (401)
T PLN02282 154 ---HRAHASTEGVAKYLKPSVAGFLMQK--------------------------ELDYLVGAVANP---KKPFAAIVGGS 201 (401)
T ss_pred ---hhcccchhhhhhhcCccccchHHHH--------------------------HHHHHHHHhcCC---CCCeEEEEcCC
Confidence 011111111111111 12222 344444444321 2222 22 5
Q ss_pred eecChHhHhhHHHHHHhCCEEEEeCC-------CCcCCCCc----hhHHHHHHHHHHHHHHcCCcEEE-ecchh-hhhcC
Q 036921 256 KIENIEGLTHFDEILQAADGIILSRG-------NLGIDLPP----EKVFLFQKAALYKCNMAGKPAVV-TRVVD-SMTDN 322 (527)
Q Consensus 256 KIEt~~av~nldeI~~~sDgImIaRg-------DLg~e~~~----~~v~~~qk~Ii~~c~~~gKpvi~-Tq~Le-SM~~~ 322 (527)
|+.+.-++ ++.++..+|.+++|-| -.|.++|- ++....-++|++.+++.|+.+++ ....- .-...
T Consensus 202 KvsdKi~v--i~~Ll~kvD~lliGG~ma~tFl~A~G~~iG~sl~e~d~i~~a~~il~~a~~~g~~I~lPvD~v~~~~~~~ 279 (401)
T PLN02282 202 KVSTKIGV--IESLLEKVDILLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLIEKAKAKGVSLLLPTDVVIADKFAP 279 (401)
T ss_pred cHHhHHHH--HHHHHHhhhhheeccHHHHHHHHHcCCCcChhhcChhhHHHHHHHHHHHHhcCCEEeCCceEEEecccCC
Confidence 77776655 7778888899998732 13555554 34445556899999999998887 54331 10111
Q ss_pred CCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhh--hhhhhcccCCCCChHHHHHHH
Q 036921 323 LRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLY--FKKTVKCVGEPMTHLESIASS 400 (527)
Q Consensus 323 p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~--~~~~~~~~~~~~~~~~~ia~~ 400 (527)
..+ + ++.++ +.+- .|...|- +| -++++...++++.++..+|.-.+ |. .+.-..-+.+++.+
T Consensus 280 ~~~-~-~~~~~-~~ip--~~~~~lD----IG---p~Ti~~~~~~i~~aktI~wNGP~GvfE-----~~~F~~GT~~l~~a 342 (401)
T PLN02282 280 DAN-S-KVVPA-SAIP--DGWMGLD----IG---PDSIKTFSEALDTTKTIIWNGPMGVFE-----FEKFAAGTEAIAKK 342 (401)
T ss_pred CCC-e-EEeeh-hcCC--CCCeeec----cC---HHHHHHHHHHHhhCCEEEEECCcCCcc-----CcchhHHHHHHHHH
Confidence 111 1 11111 1121 1333343 45 36788889999999998887432 32 11111235566665
Q ss_pred HHHHHHhcCCcEEEEECCCcHHHHHHHhhCCCCC
Q 036921 401 AVRAAIKVKASVIICFTSSGRAARLIAKYRPTMP 434 (527)
Q Consensus 401 av~~a~~~~a~~Ivv~T~sG~tA~~is~~RP~~P 434 (527)
..++. +.+|..|+ -.|.|+..+.++--.-.
T Consensus 343 ia~~t-~~~a~siv---GGGdt~aA~~~~g~~~~ 372 (401)
T PLN02282 343 LAELS-GKGVTTII---GGGDSVAAVEKVGLADK 372 (401)
T ss_pred HHHhh-cCCCEEEE---eCcHHHHHHHHcCCcCC
Confidence 55422 23444333 35899998888654333
No 145
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=78.26 E-value=12 Score=36.93 Aligned_cols=75 Identities=19% Similarity=0.191 Sum_probs=48.5
Q ss_pred CCHhhHHH-HHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEE----eecCh-HhHhhHHHHHHh-CCEE
Q 036921 204 LSDKDKEV-ISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFA----KIENI-EGLTHFDEILQA-ADGI 276 (527)
Q Consensus 204 lt~~D~~d-i~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~Iia----KIEt~-~av~nldeI~~~-sDgI 276 (527)
++++.+.. .+ .+.+.|+|||.++|..+.+.++++.+ .. .+++++ ++.|. +.++|+.+.++. ++|+
T Consensus 140 ~~~~~i~~~~~-~a~~~GaD~Ik~~~~~~~~~~~~i~~---~~----~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 140 KDPDLIAYAAR-IGAELGADIVKTKYTGDAESFKEVVE---GC----PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred cCHHHHHHHHH-HHHHHCCCEEEecCCCCHHHHHHHHh---cC----CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 45555554 43 56899999999998765444444443 22 233433 23333 267888988887 6999
Q ss_pred EEeCCCCcCC
Q 036921 277 ILSRGNLGID 286 (527)
Q Consensus 277 mIaRgDLg~e 286 (527)
.+||.=+..+
T Consensus 212 ~vg~~i~~~~ 221 (235)
T cd00958 212 AVGRNIFQRP 221 (235)
T ss_pred EechhhhcCC
Confidence 9998876555
No 146
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=78.05 E-value=82 Score=33.52 Aligned_cols=167 Identities=16% Similarity=0.135 Sum_probs=99.2
Q ss_pred CCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEe-cCCCCHH------HHHHHHHHHHHcCCCCCceEEEeecC
Q 036921 187 GSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSL-SYTRHAE------DVRQAREYLSKLGDLSQTQIFAKIEN 259 (527)
Q Consensus 187 ~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~-sfV~s~~------dv~~lr~~l~~~~~~~~~~IiaKIEt 259 (527)
+.|-|..-|+.. +|.+++..|.+...+.|++.|=+ ||| +++ |-.++.+.+..... .....+ +=+
T Consensus 53 TlRDG~Q~~g~~-----~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~~~-~~~~~l--~~n 123 (347)
T PLN02746 53 GPRDGLQNEKNI-----VPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNLEG-ARFPVL--TPN 123 (347)
T ss_pred CCCccCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhccC-CceeEE--cCC
Confidence 346677777764 35556666655667799999855 666 432 43344333433210 222233 225
Q ss_pred hHhHhhHHHHHHh-CCEEEE--eCCCCc----CCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhh-hcCCCCChHhh-
Q 036921 260 IEGLTHFDEILQA-ADGIIL--SRGNLG----IDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSM-TDNLRPTRAEA- 330 (527)
Q Consensus 260 ~~av~nldeI~~~-sDgImI--aRgDLg----~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM-~~~p~PtraEv- 330 (527)
.++++.. ++. .|.|-+ .-.|+- .....++.....+++++.|+++|..+..+ + || ...|.-+|++.
T Consensus 124 ~~die~A---~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~--i-s~~fg~p~~~r~~~~ 197 (347)
T PLN02746 124 LKGFEAA---IAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGY--V-SCVVGCPIEGPVPPS 197 (347)
T ss_pred HHHHHHH---HHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE--E-EeeecCCccCCCCHH
Confidence 5555443 333 365433 333321 12445677788889999999999988531 0 11 12344555444
Q ss_pred --hhHHH-HHHhCCcEEEeCCccccCCChHHHHHHHHHHHHH
Q 036921 331 --TDVAN-AVLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 331 --~Dv~n-av~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
.+++. ++..|+|.|.|. +|.=--.|.++.++++.+.++
T Consensus 198 ~l~~~~~~~~~~Gad~I~l~-DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 198 KVAYVAKELYDMGCYEISLG-DTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHHHHHHHHHcCCCEEEec-CCcCCcCHHHHHHHHHHHHHh
Confidence 44333 777899999998 776667899999998888654
No 147
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=78.05 E-value=85 Score=32.05 Aligned_cols=168 Identities=14% Similarity=0.131 Sum_probs=98.5
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEec-CCCCH-----HHHHHHHHHHHHcCCCCCceEEEeecChHh
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLS-YTRHA-----EDVRQAREYLSKLGDLSQTQIFAKIENIEG 262 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~s-fV~s~-----~dv~~lr~~l~~~~~~~~~~IiaKIEt~~a 262 (527)
|-|..-|+.. +|.+++..|.+...+.|+|.|=+. |+... .|-.++.+.+... .+.++.+-.-+.++
T Consensus 7 RDG~Q~~~~~-----~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~---~~~~~~~~~~~~~d 78 (274)
T cd07938 7 RDGLQNEKTF-----IPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRR---PGVRYSALVPNLRG 78 (274)
T ss_pred CCCCcCCCCC-----cCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccC---CCCEEEEECCCHHH
Confidence 3455555553 466667766666678999998664 43322 3444555555432 34566665545444
Q ss_pred HhhHHHHHHh-CCE--EEEeCCCC----cCCCCchhHHHHHHHHHHHHHHcCCcEEE--ecchhhhhcCCCCChHhhhhH
Q 036921 263 LTHFDEILQA-ADG--IILSRGNL----GIDLPPEKVFLFQKAALYKCNMAGKPAVV--TRVVDSMTDNLRPTRAEATDV 333 (527)
Q Consensus 263 v~nldeI~~~-sDg--ImIaRgDL----g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~--Tq~LeSM~~~p~PtraEv~Dv 333 (527)
+ +..++. .|. +++.-.|+ -.....++....-+..++.++++|+-+.+ +..+..- ...+-+...+.++
T Consensus 79 v---~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~-~~~~~~~~~~~~~ 154 (274)
T cd07938 79 A---ERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCP-YEGEVPPERVAEV 154 (274)
T ss_pred H---HHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCC-CCCCCCHHHHHHH
Confidence 4 333333 253 44444442 11233456666677889999999998764 2111111 1111234555565
Q ss_pred HH-HHHhCCcEEEeCCccccCCChHHHHHHHHHHHHH
Q 036921 334 AN-AVLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 334 ~n-av~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
+. +...|+|.|-|. +|.=.-.|.++-+++..+.++
T Consensus 155 ~~~~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 155 AERLLDLGCDEISLG-DTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHHHHcCCCEEEEC-CCCCccCHHHHHHHHHHHHHH
Confidence 55 566799999998 776667899988888877643
No 148
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.95 E-value=28 Score=35.34 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=71.6
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEE--EeCCCCcCCCCc-hh
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGII--LSRGNLGIDLPP-EK 291 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgIm--IaRgDLg~e~~~-~~ 291 (527)
.+.+.|+|++++|-.- .++.+++.+.+.+.| +..|.-+=...--+.+..|.+.++|.+ +++ .|+ .|. ..
T Consensus 112 ~~~~aGvdGviipDLp-~ee~~~~~~~~~~~g----l~~I~lvap~t~~eri~~i~~~s~gfIY~vs~--~Gv-TG~~~~ 183 (258)
T PRK13111 112 DAAEAGVDGLIIPDLP-PEEAEELRAAAKKHG----LDLIFLVAPTTTDERLKKIASHASGFVYYVSR--AGV-TGARSA 183 (258)
T ss_pred HHHHcCCcEEEECCCC-HHHHHHHHHHHHHcC----CcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeC--CCC-CCcccC
Confidence 5678999999999764 578888888888766 344443423233567889999998765 444 332 222 12
Q ss_pred HHHHHHHHHHHHHHc-CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 292 VFLFQKAALYKCNMA-GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 292 v~~~qk~Ii~~c~~~-gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
.+.-....++.++++ ++|+++ ..+ =++.++ ..+. .++|++...
T Consensus 184 ~~~~~~~~i~~vk~~~~~pv~vGfGI---------~~~e~v---~~~~-~~ADGviVG 228 (258)
T PRK13111 184 DAADLAELVARLKAHTDLPVAVGFGI---------STPEQA---AAIA-AVADGVIVG 228 (258)
T ss_pred CCccHHHHHHHHHhcCCCcEEEEccc---------CCHHHH---HHHH-HhCCEEEEc
Confidence 334445566666665 999998 662 344444 4433 359998875
No 149
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=77.75 E-value=19 Score=40.59 Aligned_cols=175 Identities=11% Similarity=0.090 Sum_probs=104.7
Q ss_pred CCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHH---HHHHHHHHHcCCCCCceEEEeecC--hH
Q 036921 187 GSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDV---RQAREYLSKLGDLSQTQIFAKIEN--IE 261 (527)
Q Consensus 187 ~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv---~~lr~~l~~~~~~~~~~IiaKIEt--~~ 261 (527)
+++-.|.+-.-.-.-..=++...+.|. ...+.|+|+|-+. |.+.+++ ..+++.|...| .+++++|-|-- ..
T Consensus 26 GG~~PI~VQSMt~t~T~D~~atv~Qi~-~L~~aGceiVRvt-vp~~~~A~al~~I~~~L~~~g--~~iPLVADIHF~~~~ 101 (606)
T PRK00694 26 GSEHSIKIQSMTTTATTDVDGTVRQIC-ALQEWGCDIVRVT-VQGLKEAQACEHIKERLIQQG--ISIPLVADIHFFPQA 101 (606)
T ss_pred CCCCceEEEecCCCCcccHHHHHHHHH-HHHHcCCCEEEEc-CCCHHHHHhHHHHHHHHhccC--CCCCEEeecCCChHH
Confidence 555555553322111111344455564 4578999987765 4555555 45555666677 78999999943 23
Q ss_pred hHhhHHHHHHhCCEEEEeCCCCcC--------C-------CCchhHHHHHHHHHHHHHHcCCcEEE-ec--chhhh-hcC
Q 036921 262 GLTHFDEILQAADGIILSRGNLGI--------D-------LPPEKVFLFQKAALYKCNMAGKPAVV-TR--VVDSM-TDN 322 (527)
Q Consensus 262 av~nldeI~~~sDgImIaRgDLg~--------e-------~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq--~LeSM-~~~ 322 (527)
|+.- ++..|.|=|-||.++- + -.++++..--+.++.+|+++|+|+=+ ++ =|+.= ...
T Consensus 102 A~~a----~~~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i~~~ 177 (606)
T PRK00694 102 AMHV----ADFVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERVMQR 177 (606)
T ss_pred HHHH----HHhcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHH
Confidence 3322 2337999999999986 1 12346666777999999999999765 43 23221 111
Q ss_pred CCCChHhh-----hhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhh
Q 036921 323 LRPTRAEA-----TDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEK 372 (527)
Q Consensus 323 p~PtraEv-----~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~ 372 (527)
--+|..-+ ..+--+-..|++=+.+|-=+ ..|...|+.-+.+.++.++
T Consensus 178 yG~tpegmVeSAle~~~i~e~~~f~diviS~Ks---Snv~~mi~AyrlLa~~~d~ 229 (606)
T PRK00694 178 YGDTIEGMVYSALEYIEVCEKLDYRDVVFSMKS---SNPKVMVAAYRQLAKDLDA 229 (606)
T ss_pred hCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc---CCHHHHHHHHHHHHHHhhc
Confidence 11333222 22222556788889988444 4677777777777766653
No 150
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=77.55 E-value=24 Score=35.05 Aligned_cols=151 Identities=16% Similarity=0.120 Sum_probs=86.3
Q ss_pred CCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-----CCEE
Q 036921 202 PTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-----ADGI 276 (527)
Q Consensus 202 p~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-----sDgI 276 (527)
|..|+.|.+.+-+-+.+.|+..|+++ +..+..+++.|. | ..+++.+=|--+.|....+.-+.. .||.
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~--~--~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA 88 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLK--G--SDVKVCTVIGFPLGANTTAVKAFEAKDAIANGA 88 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhC--C--CCCeEEEEecccCCCChHHHHHHHHHHHHHcCC
Confidence 57789888887777888999999988 778888888884 3 567888888666665544332221 1221
Q ss_pred EEeCCCCcCCCCc---hhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHH-HHHhCCcEEEeCCcccc
Q 036921 277 ILSRGNLGIDLPP---EKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLGAETLR 352 (527)
Q Consensus 277 mIaRgDLg~e~~~---~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~n-av~~g~D~imLs~Eta~ 352 (527)
-- =|+-+.++. .++-.+.+.|....... .|..+.-+ ++++.=+..|+.++.. ++..|+|.|--|.=-+.
T Consensus 89 ~E--iD~Vin~~~~~~g~~~~v~~ei~~v~~~~-~~~~lKvI----lEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~ 161 (221)
T PRK00507 89 DE--IDMVINIGALKSGDWDAVEADIRAVVEAA-GGAVLKVI----IETCLLTDEEKVKACEIAKEAGADFVKTSTGFST 161 (221)
T ss_pred ce--EeeeccHHHhcCCCHHHHHHHHHHHHHhc-CCceEEEE----eecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCC
Confidence 00 011122221 13334444443333322 23222222 2344557788888777 77789996554421112
Q ss_pred CCChHHHHHHHHHHH
Q 036921 353 GLYPVETISIVGKIC 367 (527)
Q Consensus 353 G~yP~e~V~~~~~i~ 367 (527)
|---.+.|+.|++.+
T Consensus 162 ~gat~~~v~~m~~~~ 176 (221)
T PRK00507 162 GGATVEDVKLMRETV 176 (221)
T ss_pred CCCCHHHHHHHHHHh
Confidence 223477888877654
No 151
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=77.47 E-value=49 Score=35.24 Aligned_cols=97 Identities=18% Similarity=0.189 Sum_probs=59.3
Q ss_pred hHHHHHhhcccccccEEEecCCCCHHHH---HHHHHHHHHcCCCCCceEEEee--cChHhHhhHHHHHHhCCEEEEeCCC
Q 036921 208 DKEVISSWGVQNKIDFLSLSYTRHAEDV---RQAREYLSKLGDLSQTQIFAKI--ENIEGLTHFDEILQAADGIILSRGN 282 (527)
Q Consensus 208 D~~di~~~~~~~g~d~I~~sfV~s~~dv---~~lr~~l~~~~~~~~~~IiaKI--Et~~av~nldeI~~~sDgImIaRgD 282 (527)
..+.|. ...+.|+|.|-+. |.+.++. .++++.|.+.| .+++++|-| .-..|+.-+ - ..|.|=|-||.
T Consensus 33 tv~QI~-~L~~aGceivRva-vp~~~~a~al~~I~~~l~~~g--~~iPlVADIHFd~~lAl~a~---~-~v~kiRINPGN 104 (359)
T PF04551_consen 33 TVAQIK-RLEEAGCEIVRVA-VPDMEAAEALKEIKKRLRALG--SPIPLVADIHFDYRLALEAI---E-AVDKIRINPGN 104 (359)
T ss_dssp HHHHHH-HHHHCT-SEEEEE-E-SHHHHHHHHHHHHHHHCTT---SS-EEEEESTTCHHHHHHH---H-C-SEEEE-TTT
T ss_pred HHHHHH-HHHHcCCCEEEEc-CCCHHHHHHHHHHHHhhccCC--CCCCeeeecCCCHHHHHHHH---H-HhCeEEECCCc
Confidence 344554 3467899987665 4555554 55555666677 789999999 445555443 2 38999999999
Q ss_pred CcCCC--CchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 283 LGIDL--PPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 283 Lg~e~--~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
++-++ +...+..--+.++++|+++|+|+=+
T Consensus 105 i~~~~~~~~g~~~~~~~~vv~~ake~~ipIRI 136 (359)
T PF04551_consen 105 IVDEFQEELGSIREKVKEVVEAAKERGIPIRI 136 (359)
T ss_dssp SS----SS-SS-HHHHHHHHHHHHHHT-EEEE
T ss_pred ccccccccccchHHHHHHHHHHHHHCCCCEEE
Confidence 95322 1124566778999999999999655
No 152
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=77.42 E-value=39 Score=35.86 Aligned_cols=94 Identities=14% Similarity=0.137 Sum_probs=54.9
Q ss_pred hHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhH-----------hhHHHHHHh-CCE
Q 036921 208 DKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGL-----------THFDEILQA-ADG 275 (527)
Q Consensus 208 D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av-----------~nldeI~~~-sDg 275 (527)
|.+.+.+.+.+.|+|.++++ .-.++.+..... .++.+|.|+-+...+ -..++-++. +||
T Consensus 92 dp~~~i~~a~~~g~dAv~~~-------~G~l~~~~~~~~--~~iplIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdA 162 (348)
T PRK09250 92 DPENIVKLAIEAGCNAVAST-------LGVLEAVARKYA--HKIPFILKLNHNELLSYPNTYDQALTASVEDALRLGAVA 162 (348)
T ss_pred CHHHHHHHHHhcCCCEEEeC-------HHHHHhcccccc--CCCCEEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCE
Confidence 44433346688899999998 222222222222 457789998765444 235555555 576
Q ss_pred EEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 276 IILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 276 ImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
|-+. -.+|-+.- .+...--.++...|++.|.|++.
T Consensus 163 V~~t-vy~Gs~~E-~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 163 VGAT-IYFGSEES-RRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred EEEE-EecCCHHH-HHHHHHHHHHHHHHHHhCCCEEE
Confidence 5543 11111111 23444456899999999999986
No 153
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=76.85 E-value=30 Score=35.28 Aligned_cols=148 Identities=15% Similarity=0.168 Sum_probs=88.2
Q ss_pred CCCCHhhHHHHHhhccc--ccccEEEecCCCCHHHHHHHHHHHHHcCCCC-CceEEEeecChHhHhhHHHHHHhC-CEEE
Q 036921 202 PTLSDKDKEVISSWGVQ--NKIDFLSLSYTRHAEDVRQAREYLSKLGDLS-QTQIFAKIENIEGLTHFDEILQAA-DGII 277 (527)
Q Consensus 202 p~lt~~D~~di~~~~~~--~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~-~~~IiaKIEt~~av~nldeI~~~s-DgIm 277 (527)
|..|+.|.+.+-+.+.+ .++..|+++ +..+..+++.|...+ . ++++.+=|=-|.|-...+.-+..+ .++-
T Consensus 21 p~~T~~~I~~lc~eA~~~~~~faaVcV~----P~~v~~a~~~L~~~~--~~~vkv~tVigFP~G~~~t~~K~~Ea~~Ai~ 94 (257)
T PRK05283 21 DDDTDEKVIALCHQAKTPVGNTAAICIY----PRFIPIARKTLREQG--TPEIRIATVTNFPHGNDDIDIALAETRAAIA 94 (257)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEEC----HHHHHHHHHHhcccC--CCCCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 56788888877666777 578888775 578888999886433 3 588888887776666554443322 0000
Q ss_pred EeCC--CCcCCCCc------hhHHHHHHHHHHHHHHcCCc--EEE-ecchhhhhcCCCCChHh-hhhHHH-HHHhCCcEE
Q 036921 278 LSRG--NLGIDLPP------EKVFLFQKAALYKCNMAGKP--AVV-TRVVDSMTDNLRPTRAE-ATDVAN-AVLDGSDAI 344 (527)
Q Consensus 278 IaRg--DLg~e~~~------~~v~~~qk~Ii~~c~~~gKp--vi~-Tq~LeSM~~~p~PtraE-v~Dv~n-av~~g~D~i 344 (527)
-|-- |+-+.++. +.+..-.+.+.+.|.. |+| ||+ |..| |..| +..... ++..|+|.|
T Consensus 95 ~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~-~~~lKVIlEt~~L---------~~ee~i~~a~~~a~~aGADFV 164 (257)
T PRK05283 95 YGADEVDVVFPYRALMAGNEQVGFELVKACKEACAA-NVLLKVIIETGEL---------KDEALIRKASEIAIKAGADFI 164 (257)
T ss_pred cCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCC-CceEEEEEecccc---------CCHHHHHHHHHHHHHhCCCEE
Confidence 0111 11122222 2333344455555531 344 777 7766 4443 544443 777899998
Q ss_pred EeCCccccCCC----hHHHHHHHHHHHHH
Q 036921 345 LLGAETLRGLY----PVETISIVGKICAE 369 (527)
Q Consensus 345 mLs~Eta~G~y----P~e~V~~~~~i~~~ 369 (527)
==| .|.. .++.|+.|++.+++
T Consensus 165 KTS----TGf~~~gAt~edv~lm~~~i~~ 189 (257)
T PRK05283 165 KTS----TGKVPVNATLEAARIMLEVIRD 189 (257)
T ss_pred EcC----CCCCCCCCCHHHHHHHHHHHHh
Confidence 654 5544 47888998887754
No 154
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=76.49 E-value=5 Score=42.10 Aligned_cols=48 Identities=19% Similarity=0.336 Sum_probs=40.3
Q ss_pred EEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHH
Q 036921 32 IVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAA 79 (527)
Q Consensus 32 Ii~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~ 79 (527)
+.+.+|+..+..+.++.++++|++++=+|++||..+.+.++++.+|+.
T Consensus 85 v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~ 132 (325)
T cd00381 85 VGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKK 132 (325)
T ss_pred EEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 455667655667899999999999999999999998888888888864
No 155
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=76.24 E-value=1.1e+02 Score=32.33 Aligned_cols=158 Identities=12% Similarity=0.074 Sum_probs=95.0
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEe---------cCC-C--CHHHHHHHHHHHHHcCCCCCceEEEe
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSL---------SYT-R--HAEDVRQAREYLSKLGDLSQTQIFAK 256 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~---------sfV-~--s~~dv~~lr~~l~~~~~~~~~~IiaK 256 (527)
|-|-..++.. ++..++..+.....+.|+|.|=+ ||. . ...+.+.++.+.... .+.++.+.
T Consensus 12 RDG~q~~~~~-----f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~---~~~~~~~l 83 (337)
T PRK08195 12 RDGMHAVRHQ-----YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV---KQAKIAAL 83 (337)
T ss_pred CCcCcCCCCc-----cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC---CCCEEEEE
Confidence 4454555544 46667777765666789999877 443 1 111334444433322 34555554
Q ss_pred ecChHhHhhHHHHHH---h-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhh
Q 036921 257 IENIEGLTHFDEILQ---A-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATD 332 (527)
Q Consensus 257 IEt~~av~nldeI~~---~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~D 332 (527)
+- .+..+.+++-. . .|.|-|+ . ...+. ..-++.++.++++|.-+.++-| . .+..+.+++.+
T Consensus 84 l~--pg~~~~~dl~~a~~~gvd~iri~-----~--~~~e~-~~~~~~i~~ak~~G~~v~~~l~-~----a~~~~~e~l~~ 148 (337)
T PRK08195 84 LL--PGIGTVDDLKMAYDAGVRVVRVA-----T--HCTEA-DVSEQHIGLARELGMDTVGFLM-M----SHMAPPEKLAE 148 (337)
T ss_pred ec--cCcccHHHHHHHHHcCCCEEEEE-----E--ecchH-HHHHHHHHHHHHCCCeEEEEEE-e----ccCCCHHHHHH
Confidence 42 12223333332 2 3776664 1 22222 2458899999999988776222 1 24567788877
Q ss_pred HHHH-HHhCCcEEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 333 VANA-VLDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 333 v~na-v~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
.+.. ...|+|+|.+. +|+=.-+|.++-+..+.+-++.
T Consensus 149 ~a~~~~~~Ga~~i~i~-DT~G~~~P~~v~~~v~~l~~~l 186 (337)
T PRK08195 149 QAKLMESYGAQCVYVV-DSAGALLPEDVRDRVRALRAAL 186 (337)
T ss_pred HHHHHHhCCCCEEEeC-CCCCCCCHHHHHHHHHHHHHhc
Confidence 7764 45699999997 8888889999888888876554
No 156
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=75.94 E-value=40 Score=35.46 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=54.5
Q ss_pred EEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccC
Q 036921 275 GIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRG 353 (527)
Q Consensus 275 gImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G 353 (527)
++|--+...|.-.|+.+ |+.-+.+++. ...|+++ ..+ -+ -+|++.|+..|+|+++++.--+..
T Consensus 221 avmPl~~pIGsg~gv~~-p~~i~~~~e~---~~vpVivdAGI---------g~---~sda~~AmelGadgVL~nSaIa~a 284 (326)
T PRK11840 221 AVMPLGAPIGSGLGIQN-PYTIRLIVEG---ATVPVLVDAGV---------GT---ASDAAVAMELGCDGVLMNTAIAEA 284 (326)
T ss_pred EEeeccccccCCCCCCC-HHHHHHHHHc---CCCcEEEeCCC---------CC---HHHHHHHHHcCCCEEEEcceeccC
Confidence 33333445555555543 4444555544 5689998 542 22 368899999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHh
Q 036921 354 LYPVETISIVGKICAEAE 371 (527)
Q Consensus 354 ~yP~e~V~~~~~i~~~aE 371 (527)
+.|+.--+-|+.-++...
T Consensus 285 ~dPv~Ma~A~~~av~aGr 302 (326)
T PRK11840 285 KNPVLMARAMKLAVEAGR 302 (326)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999887777666554433
No 157
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=75.74 E-value=12 Score=38.13 Aligned_cols=71 Identities=21% Similarity=0.312 Sum_probs=49.1
Q ss_pred cccccEEEecCCCC-----HHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeC-----CCCcCCC
Q 036921 218 QNKIDFLSLSYTRH-----AEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSR-----GNLGIDL 287 (527)
Q Consensus 218 ~~g~d~I~~sfV~s-----~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaR-----gDLg~e~ 287 (527)
..++|+|++|--.+ .++++++|+.+ . ++|+ +=|---.+|+.++++.+||++||- |+..-.+
T Consensus 170 ~~~aDaviVtG~~TG~~~~~~~l~~vr~~~------~-~PVl--vGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~~~n~V 240 (254)
T PF03437_consen 170 RGGADAVIVTGKATGEPPDPEKLKRVREAV------P-VPVL--VGSGVTPENIAEYLSYADGAIVGSYFKKDGKWENPV 240 (254)
T ss_pred hcCCCEEEECCcccCCCCCHHHHHHHHhcC------C-CCEE--EecCCCHHHHHHHHHhCCEEEEeeeeeeCCEeCCcC
Confidence 57899999998875 44445555433 2 4444 334445689999999999999985 6666677
Q ss_pred CchhHHHHHH
Q 036921 288 PPEKVFLFQK 297 (527)
Q Consensus 288 ~~~~v~~~qk 297 (527)
..+++-.+.+
T Consensus 241 D~~Rv~~fm~ 250 (254)
T PF03437_consen 241 DPERVRRFME 250 (254)
T ss_pred CHHHHHHHHH
Confidence 7777655443
No 158
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=75.65 E-value=57 Score=33.35 Aligned_cols=155 Identities=21% Similarity=0.246 Sum_probs=85.7
Q ss_pred HhHhhHHHHHHh-----CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhc-CCCC-ChHhhhhH
Q 036921 261 EGLTHFDEILQA-----ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTD-NLRP-TRAEATDV 333 (527)
Q Consensus 261 ~av~nldeI~~~-----sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~-~p~P-traEv~Dv 333 (527)
.+++|++++++. +|+++.-+|=+..--+ --.+.+|.|+ .|.++.+ .|.| .-+-+..+
T Consensus 40 ~gl~d~e~~v~~v~~~g~dav~~~~G~~~~~~~--------------~y~~dvpliv--kl~~~t~l~~~~~~~~~~~~v 103 (265)
T COG1830 40 EGLEDPENIVAKVAEAGADAVAMTPGIARSVHR--------------GYAHDVPLIV--KLNGSTSLSPDPNDQVLVATV 103 (265)
T ss_pred ccccCHHHHHHHHHhcCCCEEEecHhHHhhcCc--------------cccCCcCEEE--EeccccccCCCcccceeeeeH
Confidence 466666666654 3677765543321111 1123688887 2333322 2222 11223667
Q ss_pred HHHHHhCCcEEEe----CCccccCCChHHHHHHHHHHHHHHhhccchh--hhhhhhhcccCCCCChHHHHHHHHHHHHHh
Q 036921 334 ANAVLDGSDAILL----GAETLRGLYPVETISIVGKICAEAEKVFNQD--LYFKKTVKCVGEPMTHLESIASSAVRAAIK 407 (527)
Q Consensus 334 ~nav~~g~D~imL----s~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~--~~~~~~~~~~~~~~~~~~~ia~~av~~a~~ 407 (527)
-.|+..|+|++-. -+|+- -+.++.+.++...+.++--.. ..|.+.......+.-..+ ...-|.+++.+
T Consensus 104 e~ai~lgadAV~~~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~-~v~~aaRlaae 177 (265)
T COG1830 104 EDAIRLGADAVGATVYVGSETE-----REMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDAD-LVGYAARLAAE 177 (265)
T ss_pred HHHHhCCCcEEEEEEecCCcch-----HHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHH-HHHHHHHHHHH
Confidence 7799999999754 34443 678888888888877752110 011110000000112233 34446778889
Q ss_pred cCCcEE-EEECCCcHHHHHHHhhCCCCCEEEE
Q 036921 408 VKASVI-ICFTSSGRAARLIAKYRPTMPVLSV 438 (527)
Q Consensus 408 ~~a~~I-vv~T~sG~tA~~is~~RP~~PIiAv 438 (527)
++|+.| +-+|.+-.+-+.+-++-| +||+.-
T Consensus 178 lGADIiK~~ytg~~e~F~~vv~~~~-vpVvia 208 (265)
T COG1830 178 LGADIIKTKYTGDPESFRRVVAACG-VPVVIA 208 (265)
T ss_pred hcCCeEeecCCCChHHHHHHHHhCC-CCEEEe
Confidence 999955 234444488888889999 999843
No 159
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=75.46 E-value=88 Score=34.04 Aligned_cols=167 Identities=19% Similarity=0.192 Sum_probs=107.0
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHH-HcCCCCCceEEEeecCh-HhHh-h
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLS-KLGDLSQTQIFAKIENI-EGLT-H 265 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~-~~~~~~~~~IiaKIEt~-~av~-n 265 (527)
|-|-.-|+.. +|.+++..|.+..-+.|+|+|=+.|-.+.+...+..+.+. ..+ . .+-+++... ..++ .
T Consensus 11 RDG~Q~~g~~-----~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~--~--~~~~~~~~~~~~~~~~ 81 (409)
T COG0119 11 RDGEQAPGVS-----FSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAG--L--FICALIAALARAIKRD 81 (409)
T ss_pred CcCCcCCCCc-----CCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcC--c--ccchhhhhhHHhHHhh
Confidence 4455556654 5777888886554568999998888776666666555555 322 1 223333221 2223 4
Q ss_pred HHHHHHhC-C--EEEEeCCCCcCCCCc----hhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHH-
Q 036921 266 FDEILQAA-D--GIILSRGNLGIDLPP----EKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAV- 337 (527)
Q Consensus 266 ldeI~~~s-D--gImIaRgDLg~e~~~----~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav- 337 (527)
++.++.+. | .++++-.|+.++..+ +++...-+..++.++.+|.++.. -+|... +-...-+.+++.++
T Consensus 82 ~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~--~~Ed~~---rt~~~~l~~~~~~~~ 156 (409)
T COG0119 82 IEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF--SAEDAT---RTDPEFLAEVVKAAI 156 (409)
T ss_pred HHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE--Eeeccc---cCCHHHHHHHHHHHH
Confidence 56666554 6 478888887766544 68888889999999999977775 122221 22223334455544
Q ss_pred HhCCcEEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 338 LDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 338 ~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
..|++.|-|. +|-=+-.|-+.-..++.+.+..
T Consensus 157 ~~ga~~i~l~-DTvG~~~P~~~~~~i~~l~~~v 188 (409)
T COG0119 157 EAGADRINLP-DTVGVATPNEVADIIEALKANV 188 (409)
T ss_pred HcCCcEEEEC-CCcCccCHHHHHHHHHHHHHhC
Confidence 4459999997 7777778999988888887764
No 160
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=75.24 E-value=74 Score=32.20 Aligned_cols=125 Identities=19% Similarity=0.233 Sum_probs=75.2
Q ss_pred hcccccccEEEecCCC-CHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHH-hCCEEEEeCCCCcCC-CCchh
Q 036921 215 WGVQNKIDFLSLSYTR-HAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQ-AADGIILSRGNLGID-LPPEK 291 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~-s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~-~sDgImIaRgDLg~e-~~~~~ 291 (527)
-+..+|+|+|.+---- +.++++++.+...+.| ..+++-+-|.+-++. ..+ -+|-|.+..-||... ..++
T Consensus 128 ~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG----l~~lvevh~~~E~~~---A~~~gadiIgin~rdl~~~~~d~~- 199 (260)
T PRK00278 128 EARAAGADAILLIVAALDDEQLKELLDYAHSLG----LDVLVEVHDEEELER---ALKLGAPLIGINNRNLKTFEVDLE- 199 (260)
T ss_pred HHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC----CeEEEEeCCHHHHHH---HHHcCCCEEEECCCCcccccCCHH-
Confidence 3579999998776333 5677887777776655 456666656554433 222 358888876677432 1222
Q ss_pred HHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHH
Q 036921 292 VFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIV 363 (527)
Q Consensus 292 v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~ 363 (527)
.-.+++.... ...|+|. ..+- |.. |+..+...|+|+++....-..-..|.++++-+
T Consensus 200 ---~~~~l~~~~p-~~~~vIaegGI~---------t~e---d~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l 256 (260)
T PRK00278 200 ---TTERLAPLIP-SDRLVVSESGIF---------TPE---DLKRLAKAGADAVLVGESLMRADDPGAALREL 256 (260)
T ss_pred ---HHHHHHHhCC-CCCEEEEEeCCC---------CHH---HHHHHHHcCCCEEEECHHHcCCCCHHHHHHHH
Confidence 2233333221 1347776 5532 333 44556667999999887766677888887644
No 161
>PRK00208 thiG thiazole synthase; Reviewed
Probab=75.21 E-value=70 Score=32.46 Aligned_cols=70 Identities=21% Similarity=0.181 Sum_probs=48.1
Q ss_pred CCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHH
Q 036921 287 LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGK 365 (527)
Q Consensus 287 ~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~ 365 (527)
.|+.+ +...+.+.+. .+.|||+ ..+ =| -+|++.++..|+|++++.+=-+..+.|..-.+.+..
T Consensus 159 ~gi~~-~~~i~~i~e~---~~vpVIveaGI---------~t---peda~~AmelGAdgVlV~SAItka~dP~~ma~af~~ 222 (250)
T PRK00208 159 LGLLN-PYNLRIIIEQ---ADVPVIVDAGI---------GT---PSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKL 222 (250)
T ss_pred CCCCC-HHHHHHHHHh---cCCeEEEeCCC---------CC---HHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHH
Confidence 34434 4444444443 4789998 553 22 257799999999999999888888899887777766
Q ss_pred HHHHHhh
Q 036921 366 ICAEAEK 372 (527)
Q Consensus 366 i~~~aE~ 372 (527)
-++....
T Consensus 223 Av~aGr~ 229 (250)
T PRK00208 223 AVEAGRL 229 (250)
T ss_pred HHHHHHH
Confidence 6654433
No 162
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=75.10 E-value=37 Score=33.10 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=62.9
Q ss_pred HHHHHhhcccccccEEEec--CCCCHH--HHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCc
Q 036921 209 KEVISSWGVQNKIDFLSLS--YTRHAE--DVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLG 284 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~s--fV~s~~--dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg 284 (527)
.+.++ .+.+.|+|+|.+- ..+.++ .+.++.+.+.+.+ ++.+++.+.|.+-.....+ .-.|.+.+...++.
T Consensus 82 ~~~~~-~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g---~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t 155 (219)
T cd04729 82 IEEVD-ALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY---NCLLMADISTLEEALNAAK--LGFDIIGTTLSGYT 155 (219)
T ss_pred HHHHH-HHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh---CCeEEEECCCHHHHHHHHH--cCCCEEEccCcccc
Confidence 34564 5689999987662 222232 5666665565543 4677777766543322211 12487766432221
Q ss_pred C---CCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 285 I---DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 285 ~---e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
- ......+ ..-+++ ....+.|++. ..+- ...|+..++..|+|++++.
T Consensus 156 ~~~~~~~~~~~-~~l~~i---~~~~~ipvia~GGI~------------~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 156 EETAKTEDPDF-ELLKEL---RKALGIPVIAEGRIN------------SPEQAAKALELGADAVVVG 206 (219)
T ss_pred ccccCCCCCCH-HHHHHH---HHhcCCCEEEeCCCC------------CHHHHHHHHHCCCCEEEEc
Confidence 1 1111111 122222 2233799998 6532 2356778888899999986
No 163
>TIGR03586 PseI pseudaminic acid synthase.
Probab=74.76 E-value=54 Score=34.57 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=42.5
Q ss_pred HHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHH-hCC-c
Q 036921 267 DEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVL-DGS-D 342 (527)
Q Consensus 267 deI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~-~g~-D 342 (527)
|.+.+. .|.+=||-+|+. .+ .+++.+.+.||||++ |.| .|-.|+.....++. .|. +
T Consensus 104 d~l~~~~v~~~KI~S~~~~-n~----------~LL~~va~~gkPvilstG~---------~t~~Ei~~Av~~i~~~g~~~ 163 (327)
T TIGR03586 104 DFLESLDVPAYKIASFEIT-DL----------PLIRYVAKTGKPIIMSTGI---------ATLEEIQEAVEACREAGCKD 163 (327)
T ss_pred HHHHHcCCCEEEECCcccc-CH----------HHHHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHHCCCCc
Confidence 333334 588999988884 22 245567778999999 985 47899988888876 577 4
Q ss_pred EEEeC
Q 036921 343 AILLG 347 (527)
Q Consensus 343 ~imLs 347 (527)
.++|=
T Consensus 164 i~Llh 168 (327)
T TIGR03586 164 LVLLK 168 (327)
T ss_pred EEEEe
Confidence 44443
No 164
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=74.73 E-value=70 Score=32.41 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=52.8
Q ss_pred CEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCcccc
Q 036921 274 DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLR 352 (527)
Q Consensus 274 DgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~ 352 (527)
|.||.--...|-..|+.+ +...+.|.+. .+.|||+ ..+ -| -+|++.++..|+|++++.+=-+.
T Consensus 146 ~~vmPlg~pIGsg~Gi~~-~~~I~~I~e~---~~vpVI~egGI---------~t---peda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 146 AAVMPLGSPIGSGQGLLN-PYNLRIIIER---ADVPVIVDAGI---------GT---PSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CEeCCCCcCCCCCCCCCC-HHHHHHHHHh---CCCcEEEeCCC---------CC---HHHHHHHHHcCCCEEEEChHhcC
Confidence 444442123333344444 4444444433 4789998 553 22 25778999999999999988888
Q ss_pred CCChHHHHHHHHHHHHHHh
Q 036921 353 GLYPVETISIVGKICAEAE 371 (527)
Q Consensus 353 G~yP~e~V~~~~~i~~~aE 371 (527)
++.|..-.+.+..-++...
T Consensus 210 a~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 210 AKDPVAMARAFKLAVEAGR 228 (248)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 8899887777777665443
No 165
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.69 E-value=46 Score=32.60 Aligned_cols=101 Identities=14% Similarity=0.096 Sum_probs=63.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhH-------------HH
Q 036921 228 YTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKV-------------FL 294 (527)
Q Consensus 228 fV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v-------------~~ 294 (527)
...++++..++-+.|-+.|. + .|=.-.-|+.+++.+.++.+..+.++||-|= -+..+.+ |.
T Consensus 11 r~~~~~~a~~ia~al~~gGi--~-~iEit~~tp~a~~~I~~l~~~~~~~~vGAGT---Vl~~e~a~~ai~aGA~FivSP~ 84 (201)
T PRK06015 11 LIDDVEHAVPLARALAAGGL--P-AIEITLRTPAALDAIRAVAAEVEEAIVGAGT---ILNAKQFEDAAKAGSRFIVSPG 84 (201)
T ss_pred EcCCHHHHHHHHHHHHHCCC--C-EEEEeCCCccHHHHHHHHHHHCCCCEEeeEe---CcCHHHHHHHHHcCCCEEECCC
Confidence 34566777776666666552 1 2222335677777777776655566666542 2222222 23
Q ss_pred HHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 295 FQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 295 ~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
....+++.|+++|.|++= --.=.+++..|...|+|.+=+=
T Consensus 85 ~~~~vi~~a~~~~i~~iP-------------G~~TptEi~~A~~~Ga~~vK~F 124 (201)
T PRK06015 85 TTQELLAAANDSDVPLLP-------------GAATPSEVMALREEGYTVLKFF 124 (201)
T ss_pred CCHHHHHHHHHcCCCEeC-------------CCCCHHHHHHHHHCCCCEEEEC
Confidence 446899999999999883 3334466788888999998874
No 166
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=74.68 E-value=28 Score=34.70 Aligned_cols=149 Identities=17% Similarity=0.160 Sum_probs=88.3
Q ss_pred CCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHh-----HhhHHHHHHh---C
Q 036921 202 PTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEG-----LTHFDEILQA---A 273 (527)
Q Consensus 202 p~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~a-----v~nldeI~~~---s 273 (527)
|..|+.|...+-.-|.++++..|+++ +.-+...+++|.... ...|..=|--|.| +.-.+....+ +
T Consensus 19 ~~~T~~~I~~l~~eA~~~~f~avCV~----P~~V~~A~~~l~g~~---~~~v~tVigFP~G~~~t~~K~~Ea~~ai~~GA 91 (228)
T COG0274 19 PDATEEDIARLCAEAKEYGFAAVCVN----PSYVPLAKEALKGST---VVRVCTVIGFPLGANTTAVKAAEAREAIENGA 91 (228)
T ss_pred CCCCHHHHHHHHHHHHhhCceEEEEC----cchHHHHHHHhccCC---CeEEEEecCCCCCCChHHHHHHHHHHHHHcCC
Confidence 56788888777667788898888876 456777788775321 1234444422222 2222222222 2
Q ss_pred CE--EEEeCCCCcCCCCchhHHHHHHHHHHHHHHc-CCcEEE-ecchhhhhcCCCCChHhhhhHHH-HHHhCCcEEEeCC
Q 036921 274 DG--IILSRGNLGIDLPPEKVFLFQKAALYKCNMA-GKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLGA 348 (527)
Q Consensus 274 Dg--ImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~-gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n-av~~g~D~imLs~ 348 (527)
|- ++|..|.|- .=.++.+..-.+.+.++|..+ -.-||+ |-.| |..|....++ ++..|+|.|=-|.
T Consensus 92 dEiDmVinig~~k-~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~L---------t~ee~~~A~~i~~~aGAdFVKTST 161 (228)
T COG0274 92 DEIDMVINIGALK-SGNWEAVEREIRAVVEACADAVVLKVILETGLL---------TDEEKRKACEIAIEAGADFVKTST 161 (228)
T ss_pred CeeeeeeeHHHHh-cCCHHHHHHHHHHHHHHhCCCceEEEEEecccc---------CHHHHHHHHHHHHHhCCCEEEcCC
Confidence 21 233333331 222455555566667777663 445788 8766 5666655555 6678999987664
Q ss_pred ccccCCChHHHHHHHHHHH
Q 036921 349 ETLRGLYPVETISIVGKIC 367 (527)
Q Consensus 349 Eta~G~yP~e~V~~~~~i~ 367 (527)
-=+-|.--+|.|+.|.+++
T Consensus 162 Gf~~~gAT~edv~lM~~~v 180 (228)
T COG0274 162 GFSAGGATVEDVKLMKETV 180 (228)
T ss_pred CCCCCCCCHHHHHHHHHHh
Confidence 3334555689999999987
No 167
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.48 E-value=52 Score=33.02 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=26.2
Q ss_pred hcccccccEEEecCCC----------CHHHHHHHHHHHHHcC
Q 036921 215 WGVQNKIDFLSLSYTR----------HAEDVRQAREYLSKLG 246 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~----------s~~dv~~lr~~l~~~~ 246 (527)
.+.++|+|+|=++.-. +++++.++++.+.+.|
T Consensus 29 ~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g 70 (283)
T PRK13209 29 IAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETG 70 (283)
T ss_pred HHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcC
Confidence 5679999999887422 6888999999998877
No 168
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=73.40 E-value=50 Score=34.84 Aligned_cols=83 Identities=22% Similarity=0.311 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 036921 233 EDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAV 311 (527)
Q Consensus 233 ~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi 311 (527)
++.+++.++..+.| +..++-.=..+++ |.+.+. .|.+=||-+|+.- -.+++.+.+.|||+|
T Consensus 76 e~~~~L~~~~~~~G----i~~~stpfd~~sv---d~l~~~~v~~~KIaS~~~~n-----------~pLL~~~A~~gkPvi 137 (329)
T TIGR03569 76 EDHRELKEYCESKG----IEFLSTPFDLESA---DFLEDLGVPRFKIPSGEITN-----------APLLKKIARFGKPVI 137 (329)
T ss_pred HHHHHHHHHHHHhC----CcEEEEeCCHHHH---HHHHhcCCCEEEECcccccC-----------HHHHHHHHhcCCcEE
Confidence 34444444444433 3444433333444 333344 6889999888852 234667778899999
Q ss_pred E-ecchhhhhcCCCCChHhhhhHHHHHH-hCCc
Q 036921 312 V-TRVVDSMTDNLRPTRAEATDVANAVL-DGSD 342 (527)
Q Consensus 312 ~-Tq~LeSM~~~p~PtraEv~Dv~nav~-~g~D 342 (527)
+ |.| .|-+|+.....++. .|.+
T Consensus 138 lStGm---------atl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 138 LSTGM---------ATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred EECCC---------CCHHHHHHHHHHHHHcCCC
Confidence 9 985 47789988888777 4654
No 169
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=73.14 E-value=53 Score=31.35 Aligned_cols=124 Identities=15% Similarity=0.064 Sum_probs=68.6
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHH----hCCEEEEeCCCCcC-----
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQ----AADGIILSRGNLGI----- 285 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~----~sDgImIaRgDLg~----- 285 (527)
.+.+.|+|+|.++.-. .....++... + ....+-+-.- +.+++.+ -+|.|.+++-.=+.
T Consensus 76 ~a~~~gad~vh~~~~~--~~~~~~~~~~---~--~~~~~g~~~~------t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~ 142 (212)
T PRK00043 76 LALAVGADGVHLGQDD--LPVADARALL---G--PDAIIGLSTH------TLEEAAAALAAGADYVGVGPIFPTPTKKDA 142 (212)
T ss_pred HHHHcCCCEEecCccc--CCHHHHHHHc---C--CCCEEEEeCC------CHHHHHHHhHcCCCEEEECCccCCCCCCCC
Confidence 4578999999887532 2233443322 1 2233333332 3333333 35999886432221
Q ss_pred --CCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHH
Q 036921 286 --DLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISI 362 (527)
Q Consensus 286 --e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~ 362 (527)
..+++.+. ++.+.+ ...|++. ..+ +. .++..+...|+|++.+.+.-..-..|.++++.
T Consensus 143 ~~~~g~~~~~----~~~~~~--~~~~v~a~GGI----------~~---~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~ 203 (212)
T PRK00043 143 KAPQGLEGLR----EIRAAV--GDIPIVAIGGI----------TP---ENAPEVLEAGADGVAVVSAITGAEDPEAAARA 203 (212)
T ss_pred CCCCCHHHHH----HHHHhc--CCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHH
Confidence 11222322 222222 1389888 653 22 45667777899999997665555678888888
Q ss_pred HHHHHHHH
Q 036921 363 VGKICAEA 370 (527)
Q Consensus 363 ~~~i~~~a 370 (527)
+.+.+.++
T Consensus 204 l~~~~~~~ 211 (212)
T PRK00043 204 LLAAFRAA 211 (212)
T ss_pred HHHHHhhc
Confidence 87766543
No 170
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=72.98 E-value=1.2e+02 Score=31.85 Aligned_cols=146 Identities=20% Similarity=0.203 Sum_probs=87.0
Q ss_pred CHhhHHHHHhhccccc-ccEEEecC--CC---------CHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh
Q 036921 205 SDKDKEVISSWGVQNK-IDFLSLSY--TR---------HAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA 272 (527)
Q Consensus 205 t~~D~~di~~~~~~~g-~d~I~~sf--V~---------s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~ 272 (527)
++.+..|.....-+.+ +|+|-+.+ -+ +++.+.++.+.+.+. .+++|++||= + -+.++++|++.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~---~~~Pv~vKl~-P-~~~di~~iA~~ 181 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA---TKVPVFVKLA-P-NITDIDEIAKA 181 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc---ccCceEEEeC-C-CHHHHHHHHHH
Confidence 4556666643333445 78876532 11 555555555555554 4689999994 3 56666777665
Q ss_pred C-----CEEEEe-------CCCCcCCC--------Cc---hhHHHHHHHHHHHHHHcC--CcEEE-ecchhhhhcCCCCC
Q 036921 273 A-----DGIILS-------RGNLGIDL--------PP---EKVFLFQKAALYKCNMAG--KPAVV-TRVVDSMTDNLRPT 326 (527)
Q Consensus 273 s-----DgImIa-------RgDLg~e~--------~~---~~v~~~qk~Ii~~c~~~g--Kpvi~-Tq~LeSM~~~p~Pt 326 (527)
. |||..- +.|+.... |+ .-.+.+-+.+-+.++..+ .|+|- ..+.
T Consensus 182 ~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~---------- 251 (310)
T COG0167 182 AEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIE---------- 251 (310)
T ss_pred HHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcC----------
Confidence 3 888762 14444411 11 234455566666677767 88877 5532
Q ss_pred hHhhhhHHHHHHhCCcEEEeCCccccCCC-hHHHHHHHHHHHHHHhhc
Q 036921 327 RAEATDVANAVLDGSDAILLGAETLRGLY-PVETISIVGKICAEAEKV 373 (527)
Q Consensus 327 raEv~Dv~nav~~g~D~imLs~Eta~G~y-P~e~V~~~~~i~~~aE~~ 373 (527)
-..|....++.||+++.+- |+.=.+ |- +..+|++..+++
T Consensus 252 --s~~DA~E~i~aGA~~vQv~--Tal~~~Gp~----i~~~I~~~l~~~ 291 (310)
T COG0167 252 --TGEDALEFILAGASAVQVG--TALIYKGPG----IVKEIIKGLARW 291 (310)
T ss_pred --cHHHHHHHHHcCCchheee--eeeeeeCch----HHHHHHHHHHHH
Confidence 3578899999999999886 555444 43 344444444444
No 171
>PRK08005 epimerase; Validated
Probab=72.96 E-value=1e+02 Score=30.44 Aligned_cols=132 Identities=6% Similarity=0.047 Sum_probs=79.2
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCC
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLP 288 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~ 288 (527)
...+..+ .++|+|.|.+- +++..+..++-+.+++.| .+..|.-+-+| .++.++.++...|.|+|= +++-|
T Consensus 71 ~~~i~~~-~~~gad~It~H-~Ea~~~~~~~l~~Ik~~G--~k~GlAlnP~T--p~~~i~~~l~~vD~VlvM----sV~PG 140 (210)
T PRK08005 71 QRWLPWL-AAIRPGWIFIH-AESVQNPSEILADIRAIG--AKAGLALNPAT--PLLPYRYLALQLDALMIM----TSEPD 140 (210)
T ss_pred HHHHHHH-HHhCCCEEEEc-ccCccCHHHHHHHHHHcC--CcEEEEECCCC--CHHHHHHHHHhcCEEEEE----EecCC
Confidence 3455534 78999988886 576677877778888888 67778888887 567789999999988882 23333
Q ss_pred c---hhHHHHHHHHHHHHHHc-CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHH
Q 036921 289 P---EKVFLFQKAALYKCNMA-GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIV 363 (527)
Q Consensus 289 ~---~~v~~~qk~Ii~~c~~~-gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~ 363 (527)
. .-++..-++|-+..+.. +..+-+ ..+ +.. -+...+..|+|.+++.+--....-|.+.++.|
T Consensus 141 f~GQ~f~~~~~~KI~~l~~~~~~~~I~VDGGI----------~~~---~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~ 207 (210)
T PRK08005 141 GRGQQFIAAMCEKVSQSREHFPAAECWADGGI----------TLR---AARLLAAAGAQHLVIGRALFTTANYDVTLSQF 207 (210)
T ss_pred CccceecHHHHHHHHHHHHhcccCCEEEECCC----------CHH---HHHHHHHCCCCEEEEChHhhCCCCHHHHHHHH
Confidence 2 23333444444333222 123333 332 222 22345567999988863221123455665544
No 172
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=72.74 E-value=86 Score=31.31 Aligned_cols=93 Identities=20% Similarity=0.266 Sum_probs=53.7
Q ss_pred HHHHHhhcccccccEEEe--cC---CCCHHHHHHHH--------------HHHHHcCCCCCceEEEeec-Ch---HhHhh
Q 036921 209 KEVISSWGVQNKIDFLSL--SY---TRHAEDVRQAR--------------EYLSKLGDLSQTQIFAKIE-NI---EGLTH 265 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~--sf---V~s~~dv~~lr--------------~~l~~~~~~~~~~IiaKIE-t~---~av~n 265 (527)
.+.++ ...+.|+|++=+ || +-+...|+.+- +.+.+.....+++++.+.. ++ .|+++
T Consensus 17 ~~~~~-~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~ 95 (242)
T cd04724 17 LEILK-ALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLER 95 (242)
T ss_pred HHHHH-HHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHH
Confidence 44454 446779998654 55 55555565422 2222221002455666555 43 34555
Q ss_pred HHHHHHh--CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 266 FDEILQA--ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 266 ldeI~~~--sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
+-+-+.. +||+++. || |+| -.+++++.|+++|...+.
T Consensus 96 fi~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 96 FLRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIF 134 (242)
T ss_pred HHHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEE
Confidence 5444443 4999995 55 443 457899999999987765
No 173
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=72.49 E-value=1.2e+02 Score=30.91 Aligned_cols=201 Identities=14% Similarity=0.132 Sum_probs=111.9
Q ss_pred CCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecC-CCCHHHHHHHHHHHHHcCCCCCceEEEe-ecChHhHhh
Q 036921 188 SLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSY-TRHAEDVRQAREYLSKLGDLSQTQIFAK-IENIEGLTH 265 (527)
Q Consensus 188 ~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sf-V~s~~dv~~lr~~l~~~~~~~~~~IiaK-IEt~~av~n 265 (527)
-|-|...|+.. +|..++..|.+...+.|+|.|=+.+ --++++...++. +...+ ....+.+- .-+.++++.
T Consensus 8 LRDG~Q~~~~~-----~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~~~~~~~~~-l~~~~--~~~~v~~~~r~~~~di~~ 79 (262)
T cd07948 8 LREGEQFANAF-----FDTEDKIEIAKALDAFGVDYIELTSPAASPQSRADCEA-IAKLG--LKAKILTHIRCHMDDARI 79 (262)
T ss_pred CCCcCcCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHH-HHhCC--CCCcEEEEecCCHHHHHH
Confidence 36677777754 3555666665566789999987733 334444444444 44444 33444433 233333333
Q ss_pred HHHHHHh-CCEEEE--eCCCC----cCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHH
Q 036921 266 FDEILQA-ADGIIL--SRGNL----GIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAV 337 (527)
Q Consensus 266 ldeI~~~-sDgImI--aRgDL----g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav 337 (527)
.++. .|.|-+ +-.|. -...+.++.....+++++.++++|..+.+ -. ++.. . | ...+.+++..+
T Consensus 80 ---a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e--da~r-~--~-~~~l~~~~~~~ 150 (262)
T cd07948 80 ---AVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE--DSFR-S--D-LVDLLRVYRAV 150 (262)
T ss_pred ---HHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE--eeCC-C--C-HHHHHHHHHHH
Confidence 3332 264444 22221 01234567777788999999999988776 22 1111 1 1 44566666554
Q ss_pred Hh-CCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEE
Q 036921 338 LD-GSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICF 416 (527)
Q Consensus 338 ~~-g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~ 416 (527)
.+ |+|.+.|. +|.=..+|.+.-++++.+-+..- .....++++ +. -+|.+-...|...+++ +|=.
T Consensus 151 ~~~g~~~i~l~-Dt~G~~~P~~v~~~~~~~~~~~~--~~i~~H~Hn---------~~--Gla~an~~~a~~aG~~-~vd~ 215 (262)
T cd07948 151 DKLGVNRVGIA-DTVGIATPRQVYELVRTLRGVVS--CDIEFHGHN---------DT--GCAIANAYAALEAGAT-HIDT 215 (262)
T ss_pred HHcCCCEEEEC-CcCCCCCHHHHHHHHHHHHHhcC--CeEEEEECC---------CC--ChHHHHHHHHHHhCCC-EEEE
Confidence 44 99999997 77777899998888887754321 111112221 11 2344444556677888 3444
Q ss_pred CCCc
Q 036921 417 TSSG 420 (527)
Q Consensus 417 T~sG 420 (527)
|-.|
T Consensus 216 s~~G 219 (262)
T cd07948 216 TVLG 219 (262)
T ss_pred eccc
Confidence 5444
No 174
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=72.10 E-value=1.7e+02 Score=32.80 Aligned_cols=170 Identities=16% Similarity=0.168 Sum_probs=102.9
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecC-CCCHHHHHHHHHHHHHcCCCCCceEEEeecC-hHhHh--
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSY-TRHAEDVRQAREYLSKLGDLSQTQIFAKIEN-IEGLT-- 264 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sf-V~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt-~~av~-- 264 (527)
|-|-..|+. .+|..++..|.....+.|+|.|=+.| .-++.|.+.++.+... +. .+..+.+..-. ..++.
T Consensus 14 RDG~Q~~g~-----~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~-~l-~~~~i~~~~~~~~~~i~~~ 86 (524)
T PRK12344 14 RDGAQGEGI-----SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFKRAKEL-KL-KHAKLAAFGSTRRAGVSAE 86 (524)
T ss_pred CCcCcCCCC-----CCCHHHHHHHHHHHHHcCCCEEEEcCCcCChhHHHHHHHHHHh-CC-CCcEEEEEeeccccCCCcc
Confidence 445555554 35667777776566779999998866 5577787777665432 21 23444443211 11221
Q ss_pred ---hHHHHHHh-CCEE--EEeCCCCc----CCCCchhHHHHHHHHHHHHHHcCCcEEE-ec-chhhhhcCCCCChHhhhh
Q 036921 265 ---HFDEILQA-ADGI--ILSRGNLG----IDLPPEKVFLFQKAALYKCNMAGKPAVV-TR-VVDSMTDNLRPTRAEATD 332 (527)
Q Consensus 265 ---nldeI~~~-sDgI--mIaRgDLg----~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq-~LeSM~~~p~PtraEv~D 332 (527)
.++..+.. .|.| ++.-.|+- .....++....-+..++.++++|..+-+ +. +.+. .+-+..-+.+
T Consensus 87 ~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da----~r~d~~~l~~ 162 (524)
T PRK12344 87 EDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDG----YKANPEYALA 162 (524)
T ss_pred cHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEcccccccc----ccCCHHHHHH
Confidence 12333333 2543 33434432 2234567777888999999999998766 32 1221 1223343455
Q ss_pred HHH-HHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 333 VAN-AVLDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 333 v~n-av~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
++. +...|+|.+.|. +|.=...|.++-++++.+.+..
T Consensus 163 ~~~~~~~~Gad~i~l~-DTvG~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 163 TLKAAAEAGADWVVLC-DTNGGTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred HHHHHHhCCCCeEEEc-cCCCCcCHHHHHHHHHHHHHhc
Confidence 555 445799999987 8877789999999998888765
No 175
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=71.98 E-value=67 Score=33.98 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEE
Q 036921 232 AEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAV 311 (527)
Q Consensus 232 ~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi 311 (527)
.+.++.++++..+.| +.+++-+-+.+.++-+. +..|.+-||-+++- +..+++.+-+.||||+
T Consensus 143 ~~gL~~L~~~~~~~G----l~v~tev~d~~~~~~l~---~~vd~lqIgAr~~~-----------N~~LL~~va~~~kPVi 204 (335)
T PRK08673 143 EEGLKLLAEAREETG----LPIVTEVMDPRDVELVA---EYVDILQIGARNMQ-----------NFDLLKEVGKTNKPVL 204 (335)
T ss_pred HHHHHHHHHHHHHcC----CcEEEeeCCHHHHHHHH---HhCCeEEECccccc-----------CHHHHHHHHcCCCcEE
Confidence 455667777776654 78999888877776555 45799999976653 3456677778999999
Q ss_pred E-ecchhhhhcCCCCChHhhhhHHHHHH-hCCcEEEeCC--ccccCCChHHHHHH
Q 036921 312 V-TRVVDSMTDNLRPTRAEATDVANAVL-DGSDAILLGA--ETLRGLYPVETISI 362 (527)
Q Consensus 312 ~-Tq~LeSM~~~p~PtraEv~Dv~nav~-~g~D~imLs~--Eta~G~yP~e~V~~ 362 (527)
+ +.|- .|-.|+-..+..+. .|.+-++|.- =+..-.||-+.+.+
T Consensus 205 Lk~G~~--------~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl 251 (335)
T PRK08673 205 LKRGMS--------ATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDL 251 (335)
T ss_pred EeCCCC--------CCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhH
Confidence 9 8763 45668877777664 6787666652 22343677666554
No 176
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=71.78 E-value=1.2e+02 Score=31.66 Aligned_cols=164 Identities=13% Similarity=0.149 Sum_probs=86.4
Q ss_pred ceEEEeecChHhHhhH-----HHHHHhC--CEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCC
Q 036921 251 TQIFAKIENIEGLTHF-----DEILQAA--DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNL 323 (527)
Q Consensus 251 ~~IiaKIEt~~av~nl-----deI~~~s--DgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p 323 (527)
..|++|+|...----+ -.|+..+ .|.+ -+|+--+|-.--..-. -+...|+..|-+++++ | |
T Consensus 26 ~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l-~pG~tIVE~TSGNTGI---~LA~vaa~~Gy~~iiv-m-------P 93 (300)
T COG0031 26 VEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLL-KPGGTIVEATSGNTGI---ALAMVAAAKGYRLIIV-M-------P 93 (300)
T ss_pred ceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCC-CCCCEEEEcCCChHHH---HHHHHHHHcCCcEEEE-e-------C
Confidence 5799999875433222 2222222 3322 2333333332212111 2345688999998862 1 1
Q ss_pred CCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHH
Q 036921 324 RPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVR 403 (527)
Q Consensus 324 ~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~ 403 (527)
.-.-.|--++-. ..|+..++... .+.+-..+++...+++.+...++.+...|. .|.++.----..+-+
T Consensus 94 ~~~S~er~~~l~--a~GAevi~t~~---~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~-------NpaN~~aH~~tT~~E 161 (300)
T COG0031 94 ETMSQERRKLLR--ALGAEVILTPG---APGNMKGAIERAKELAAEIPGYAVWLNQFE-------NPANPEAHYETTGPE 161 (300)
T ss_pred CCCCHHHHHHHH--HcCCEEEEcCC---CCCchHHHHHHHHHHHHhCCCceEchhhcC-------CCccHHHHHhhhHHH
Confidence 111223333444 45999998876 344456677776666665433233222232 122221111122334
Q ss_pred HHHhcC--CcEEEEECCCcHHHHHHHh----hCCCCCEEEE
Q 036921 404 AAIKVK--ASVIICFTSSGRAARLIAK----YRPTMPVLSV 438 (527)
Q Consensus 404 ~a~~~~--a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv 438 (527)
+-++++ .+++|+-.-||-|..-+++ ..|.+.|+++
T Consensus 162 I~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~v 202 (300)
T COG0031 162 IWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAV 202 (300)
T ss_pred HHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEE
Confidence 444444 8999999999988555555 5899999998
No 177
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=71.72 E-value=44 Score=35.01 Aligned_cols=111 Identities=15% Similarity=0.255 Sum_probs=64.0
Q ss_pred HHHHhhcccccccEEEecCCCC-HHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHH-hCCEEEEeCCCCcCCC
Q 036921 210 EVISSWGVQNKIDFLSLSYTRH-AEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQ-AADGIILSRGNLGIDL 287 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~sfV~s-~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~-~sDgImIaRgDLg~e~ 287 (527)
..+. ..++.++++|..+|=.- .+.++.++ + ..++++.++-|.+.... .++ -+|+|++--.+=|-+.
T Consensus 104 ~~~~-~~~~~~~~~v~~~~G~p~~~~i~~l~----~----~gi~v~~~v~s~~~A~~---a~~~G~D~iv~qG~eAGGH~ 171 (330)
T PF03060_consen 104 EQLD-VALEAKPDVVSFGFGLPPPEVIERLH----A----AGIKVIPQVTSVREARK---AAKAGADAIVAQGPEAGGHR 171 (330)
T ss_dssp HHHH-HHHHS--SEEEEESSSC-HHHHHHHH----H----TT-EEEEEESSHHHHHH---HHHTT-SEEEEE-TTSSEE-
T ss_pred cccc-cccccceEEEEeecccchHHHHHHHH----H----cCCccccccCCHHHHHH---hhhcCCCEEEEeccccCCCC
Confidence 3443 55788999999998776 44444443 3 35899999987766543 333 3699988533444444
Q ss_pred Cc--hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 288 PP--EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 288 ~~--~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+. +.......++.+. ..+|||. ..+ +.-.+++.++..|+|++.+.
T Consensus 172 g~~~~~~~~L~~~v~~~---~~iPViaAGGI------------~dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 172 GFEVGSTFSLLPQVRDA---VDIPVIAAGGI------------ADGRGIAAALALGADGVQMG 219 (330)
T ss_dssp --SSG-HHHHHHHHHHH----SS-EEEESS--------------SHHHHHHHHHCT-SEEEES
T ss_pred CccccceeeHHHHHhhh---cCCcEEEecCc------------CCHHHHHHHHHcCCCEeecC
Confidence 41 1244444444443 3499999 664 34567889999999999985
No 178
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=71.56 E-value=8.1 Score=40.77 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=43.6
Q ss_pred EEEEecCCCCCCHHHHHHHHHc--CCCeEEeecCCCCHHHHHHHHHHHHHH
Q 036921 31 KIVGTLGPKSRSVDVISGCLKA--GMSVARFDFSWGNTEYHQETLENLKAA 79 (527)
Q Consensus 31 kIi~TiGp~~~~~~~l~~l~~~--G~~v~RiN~shg~~e~~~~~i~~ir~~ 79 (527)
.+.+.+|-..++.|.+++|+++ |+|+.=|+.|||..+...++|+.||+.
T Consensus 98 ~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~ 148 (346)
T PRK05096 98 HVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREA 148 (346)
T ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHh
Confidence 3555789888999999999995 999999999999999999999999974
No 179
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=70.99 E-value=33 Score=33.56 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=61.8
Q ss_pred hhHHHHHhhcccccccEEEecC--CCCHHHHHHHHHHHHHcCCCCCceEEEe-----ecC--------hHhHhhHHHHHH
Q 036921 207 KDKEVISSWGVQNKIDFLSLSY--TRHAEDVRQAREYLSKLGDLSQTQIFAK-----IEN--------IEGLTHFDEILQ 271 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~sf--V~s~~dv~~lr~~l~~~~~~~~~~IiaK-----IEt--------~~av~nldeI~~ 271 (527)
.+.++++ .+++.|+|.|+++- .++++.+ +++....|. ..+.+-.. +++ ...++-+....+
T Consensus 82 ~~~ed~~-~~~~~Ga~~vvlgs~~l~d~~~~---~~~~~~~g~-~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~ 156 (230)
T TIGR00007 82 RSLEDVE-KLLDLGVDRVIIGTAAVENPDLV---KELLKEYGP-ERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEE 156 (230)
T ss_pred CCHHHHH-HHHHcCCCEEEEChHHhhCHHHH---HHHHHHhCC-CcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHh
Confidence 4567775 56889999888762 3444444 444444431 12211111 111 111112222333
Q ss_pred h-CCEEEEe-CCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCC
Q 036921 272 A-ADGIILS-RGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA 348 (527)
Q Consensus 272 ~-sDgImIa-RgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~ 348 (527)
. +|++++. +.-=+..-+. ++ +.+-+.++....|++. ..+ -+.+ |+..+...|+|++|+..
T Consensus 157 ~g~~~ii~~~~~~~g~~~g~-~~----~~i~~i~~~~~ipvia~GGi---------~~~~---di~~~~~~Gadgv~ig~ 219 (230)
T TIGR00007 157 LGLEGIIYTDISRDGTLSGP-NF----ELTKELVKAVNVPVIASGGV---------SSID---DLIALKKLGVYGVIVGK 219 (230)
T ss_pred CCCCEEEEEeecCCCCcCCC-CH----HHHHHHHHhCCCCEEEeCCC---------CCHH---HHHHHHHCCCCEEEEeH
Confidence 3 4888863 2111122222 11 1122233446899998 653 3444 55555567999999974
Q ss_pred ccccCCCh
Q 036921 349 ETLRGLYP 356 (527)
Q Consensus 349 Eta~G~yP 356 (527)
-=-.|++|
T Consensus 220 a~~~~~~~ 227 (230)
T TIGR00007 220 ALYEGKIT 227 (230)
T ss_pred HHHcCCCC
Confidence 43344443
No 180
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=70.77 E-value=86 Score=30.78 Aligned_cols=39 Identities=18% Similarity=0.111 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 296 QKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 296 qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
-..+++.|+++|.|++- --.--+++..|...|+|.+=+=
T Consensus 90 ~~~v~~~~~~~~i~~iP-------------G~~TptEi~~A~~~Ga~~vKlF 128 (204)
T TIGR01182 90 TPELAKHAQDHGIPIIP-------------GVATPSEIMLALELGITALKLF 128 (204)
T ss_pred CHHHHHHHHHcCCcEEC-------------CCCCHHHHHHHHHCCCCEEEEC
Confidence 35899999999999884 2223456688999999998874
No 181
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=70.72 E-value=1.3e+02 Score=30.65 Aligned_cols=170 Identities=15% Similarity=0.153 Sum_probs=97.8
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecC-CCCHHHHHHHHHHHHHcCCCCCceEEEeecC-hHhHh--
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSY-TRHAEDVRQAREYLSKLGDLSQTQIFAKIEN-IEGLT-- 264 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sf-V~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt-~~av~-- 264 (527)
|-|-..++. .++..++..+.+...+.|+|.|=+.| --++.++..++.+....- ++..+.+..-. ..++.
T Consensus 7 RDG~Q~~~~-----~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~ 79 (273)
T cd07941 7 RDGTQGEGI-----SFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDTEFFARAKKLKL--KHAKLAAFGSTRRAGVKAE 79 (273)
T ss_pred CCcCCCCCC-----CCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCC--CCcEEEEEecccccCCCcc
Confidence 445555544 34666677666666789999998744 346778777765443321 23344433211 11111
Q ss_pred ---hHHHHHHh-CCEEEE--eCCCC----cCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhH
Q 036921 265 ---HFDEILQA-ADGIIL--SRGNL----GIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDV 333 (527)
Q Consensus 265 ---nldeI~~~-sDgImI--aRgDL----g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv 333 (527)
.++..++. .|.|.+ ...|+ ....+.++.....+..++.|+++|..+.+ ..-+ ...++-+...+.++
T Consensus 80 ~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~---~d~~~~~~~~~~~~ 156 (273)
T cd07941 80 EDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF---FDGYKANPEYALAT 156 (273)
T ss_pred chHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec---cccCCCCHHHHHHH
Confidence 23333433 265544 22232 12233456667778999999999998776 2211 11112234444555
Q ss_pred HHH-HHhCCcEEEeCCccccCCChHHHHHHHHHHHHH
Q 036921 334 ANA-VLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 334 ~na-v~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
+.. ...|+|.+.+. +|.=...|.+.-+.++.+.++
T Consensus 157 ~~~~~~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 157 LKAAAEAGADWLVLC-DTNGGTLPHEIAEIVKEVRER 192 (273)
T ss_pred HHHHHhCCCCEEEEe-cCCCCCCHHHHHHHHHHHHHh
Confidence 543 45699999887 777778899888877776654
No 182
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=70.58 E-value=79 Score=31.16 Aligned_cols=107 Identities=9% Similarity=0.031 Sum_probs=64.5
Q ss_pred EEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCC--------CCch--hHH
Q 036921 224 LSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGID--------LPPE--KVF 293 (527)
Q Consensus 224 I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e--------~~~~--~v~ 293 (527)
|.+=...++++..++-+.+-+.| -++.=|. .-++++++.+.++.+..+.++||-|=-... .|.+ -.|
T Consensus 18 iaV~r~~~~~~a~~i~~al~~~G--i~~iEit-l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP 94 (212)
T PRK05718 18 VPVIVINKLEDAVPLAKALVAGG--LPVLEVT-LRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSP 94 (212)
T ss_pred EEEEEcCCHHHHHHHHHHHHHcC--CCEEEEe-cCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECC
Confidence 34444677777777777776665 2221122 567778877777776655566664421111 0000 112
Q ss_pred HHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEe
Q 036921 294 LFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (527)
Q Consensus 294 ~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imL 346 (527)
..-..+++.|++++.|.+= --.-.+++..+...|+|.+=+
T Consensus 95 ~~~~~vi~~a~~~~i~~iP-------------G~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 95 GLTPPLLKAAQEGPIPLIP-------------GVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred CCCHHHHHHHHHcCCCEeC-------------CCCCHHHHHHHHHCCCCEEEE
Confidence 3345899999999999883 111223467788899999988
No 183
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=70.49 E-value=1e+02 Score=30.71 Aligned_cols=118 Identities=12% Similarity=0.066 Sum_probs=74.2
Q ss_pred hhcccccccEEEecC------C--CCHHHHHHHHHHHHHcCCCCCceEEEe----------e------cChHhHhhHHHH
Q 036921 214 SWGVQNKIDFLSLSY------T--RHAEDVRQAREYLSKLGDLSQTQIFAK----------I------ENIEGLTHFDEI 269 (527)
Q Consensus 214 ~~~~~~g~d~I~~sf------V--~s~~dv~~lr~~l~~~~~~~~~~IiaK----------I------Et~~av~nldeI 269 (527)
+.+.+.|+++|=+.. . -+..+++++++.+.+.| +.+.+- + +..++++.+...
T Consensus 20 ~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~g----l~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 95 (275)
T PRK09856 20 RDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQ----MPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLA 95 (275)
T ss_pred HHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcC----CeEEEecCcccCcCccccCCCHHHHHHHHHHHHHH
Confidence 356799999988742 1 23467999999998876 333331 0 122455566666
Q ss_pred HHhC-----CEEEEeCCCCcCCCCc----hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHH
Q 036921 270 LQAA-----DGIILSRGNLGIDLPP----EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAV 337 (527)
Q Consensus 270 ~~~s-----DgImIaRgDLg~e~~~----~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav 337 (527)
++.+ +.|.+.+|..+..-.. +.+...-+.+...|.++|..+.+ +.. -...+..+|.+++-++.+.+
T Consensus 96 i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~--~~~~~~~~t~~~~~~l~~~~ 171 (275)
T PRK09856 96 MDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLT--PYESNVVCNANDVLHALALV 171 (275)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCC--CCcccccCCHHHHHHHHHHc
Confidence 6553 6788877765433222 35555667888889999987776 421 11224466778887777766
No 184
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=70.00 E-value=1.1e+02 Score=32.73 Aligned_cols=151 Identities=21% Similarity=0.189 Sum_probs=80.7
Q ss_pred CeEEEEEEeCcEecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEec---CCCCHHHHHHHHHHHHHcCCCC
Q 036921 173 NDVTCVIKNTATLAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLS---YTRHAEDVRQAREYLSKLGDLS 249 (527)
Q Consensus 173 ~~v~~~v~~~G~l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~s---fV~s~~dv~~lr~~l~~~~~~~ 249 (527)
+-|+-++-+|-+ ++.|=.||+.++ |+ +...++ .+..|.|.+.=| -+.|.+|+.++.+.|++.+ .
T Consensus 136 ~~iEIKigQGAK---pG~GG~Lp~~KV-----~~-~ia~~R--~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~--~ 202 (368)
T PF01645_consen 136 DMIEIKIGQGAK---PGEGGHLPGEKV-----TE-EIARIR--GVPPGVDLISPPPHHDIYSIEDLAQLIEELRELN--P 202 (368)
T ss_dssp SEEEEE---TTS---TTT--EE-GGG-------H-HHHHHH--TS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH---T
T ss_pred CeEEEEEecCcc---ccCcceechhhc-----hH-HHHHHh--CCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhC--C
Confidence 345555555553 456778888875 43 356664 588899987644 4788888888888888887 6
Q ss_pred CceEEEeecChHhHhhHHHHHHh--CCEEEEeCCCCcCCCCch--------hHHHHHHHHHHHHHHcC---CcE-EEecc
Q 036921 250 QTQIFAKIENIEGLTHFDEILQA--ADGIILSRGNLGIDLPPE--------KVFLFQKAALYKCNMAG---KPA-VVTRV 315 (527)
Q Consensus 250 ~~~IiaKIEt~~av~nldeI~~~--sDgImIaRgDLg~e~~~~--------~v~~~qk~Ii~~c~~~g---Kpv-i~Tq~ 315 (527)
..+|-.|+=.-..++.+...+.- +|.|.|.-++=|.-..+. .+.....++.+...+.| +.. +++.-
T Consensus 203 ~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGg 282 (368)
T PF01645_consen 203 GKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGG 282 (368)
T ss_dssp TSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS
T ss_pred CCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCC
Confidence 78999999666555555553332 499999766644332221 12233334444444444 344 44433
Q ss_pred hhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 316 VDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 316 LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
| .--.|++.++..|||++.+.
T Consensus 283 l-----------~t~~dv~kalaLGAD~v~ig 303 (368)
T PF01645_consen 283 L-----------RTGDDVAKALALGADAVYIG 303 (368)
T ss_dssp -------------SHHHHHHHHHCT-SEEE-S
T ss_pred c-----------cCHHHHHHHHhcCCCeeEec
Confidence 2 23579999999999999876
No 185
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=69.72 E-value=33 Score=33.95 Aligned_cols=151 Identities=17% Similarity=0.177 Sum_probs=89.9
Q ss_pred CCCHh-hHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecCh-----Hh-----HhhHHHHHH
Q 036921 203 TLSDK-DKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENI-----EG-----LTHFDEILQ 271 (527)
Q Consensus 203 ~lt~~-D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~-----~a-----v~nldeI~~ 271 (527)
..+.. |.+.+-..+++.+++.|+++. .-+..+++.+...+ ..+.++.....- .- +...++.++
T Consensus 14 ~~~~~~~~~~~~~~a~~~~~~av~v~p----~~~~~~~~~~~~~~--~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~ 87 (236)
T PF01791_consen 14 PMTGEEDIKKLCREAIEYGFDAVCVTP----GYVKPAAELLAGSG--VKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIR 87 (236)
T ss_dssp THHHHHHHHHHHHHHHHHTSSEEEEEG----GGHHHHHHHSTTST--SEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHhCCCEEEECH----HHHHHHHHHhhccc--cccceEEEeCCCCCccccccccchHHHHHHHHH
Confidence 34443 444443467889999999874 45666666554333 356666666532 12 444555555
Q ss_pred h-CCEEEE--eCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHh---------hhhHHH-HH
Q 036921 272 A-ADGIIL--SRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAE---------ATDVAN-AV 337 (527)
Q Consensus 272 ~-sDgImI--aRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraE---------v~Dv~n-av 337 (527)
. +|+|-+ -.|.++-+- ..++..--+++.+.|+.+|.|+|+ . .|+..| +...+. +.
T Consensus 88 ~GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIlE~----------~l~~~~~~~~~~~~~I~~a~ria~ 156 (236)
T PF01791_consen 88 LGADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVILEP----------YLRGEEVADEKKPDLIARAARIAA 156 (236)
T ss_dssp TT-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEEEE----------CECHHHBSSTTHHHHHHHHHHHHH
T ss_pred cCCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEEEE----------ecCchhhcccccHHHHHHHHHHHH
Confidence 4 575544 222222221 346666777999999999999997 3 344555 233333 57
Q ss_pred HhCCcEEEeCCccccCCChHHHHHHHHHHHHHHh
Q 036921 338 LDGSDAILLGAETLRGLYPVETISIVGKICAEAE 371 (527)
Q Consensus 338 ~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE 371 (527)
..|+|.+=.+.=.. ...-.+.++.|+++++.+.
T Consensus 157 e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 157 ELGADFVKTSTGKP-VGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp HTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHS
T ss_pred HhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcC
Confidence 78999987763323 4556788899888887543
No 186
>PRK14057 epimerase; Provisional
Probab=69.45 E-value=1.4e+02 Score=30.49 Aligned_cols=137 Identities=12% Similarity=0.051 Sum_probs=81.4
Q ss_pred HHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCC-------CCceEEEeecChHhHhhHHHHHHhCCEEEEeCCC
Q 036921 210 EVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDL-------SQTQIFAKIENIEGLTHFDEILQAADGIILSRGN 282 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~-------~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgD 282 (527)
..+..| .+.|+|+|.+- ++...++.+.-+.+++.|.. -...|.-+-+| .++.++.++...|.|+|=
T Consensus 89 ~~i~~~-~~aGad~It~H-~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLvM--- 161 (254)
T PRK14057 89 TAAQAC-VKAGAHCITLQ-AEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQLL--- 161 (254)
T ss_pred HHHHHH-HHhCCCEEEEe-eccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEEE---
Confidence 445434 78999988876 57667777777778877720 03567777777 677899999999998883
Q ss_pred CcCCCCc---hhHHHHHHHHHHHH---HHcCCc--EEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCcccc-
Q 036921 283 LGIDLPP---EKVFLFQKAALYKC---NMAGKP--AVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLR- 352 (527)
Q Consensus 283 Lg~e~~~---~~v~~~qk~Ii~~c---~~~gKp--vi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~- 352 (527)
+++-|+ .-.+..-++|-+.. .++|.. +-+ ..+ +.. -+...+..|+|.+++. |++
T Consensus 162 -tV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI----------~~~---ti~~l~~aGad~~V~G--SalF 225 (254)
T PRK14057 162 -AVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSL----------TQD---QLPSLIAQGIDRVVSG--SALF 225 (254)
T ss_pred -EECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCC----------CHH---HHHHHHHCCCCEEEEC--hHhh
Confidence 233332 22223333333222 234433 333 322 222 2345566799988886 343
Q ss_pred -CCChHHHHHHHHHHHHH
Q 036921 353 -GLYPVETISIVGKICAE 369 (527)
Q Consensus 353 -G~yP~e~V~~~~~i~~~ 369 (527)
...+.++++.++++...
T Consensus 226 ~~~d~~~~i~~l~~~~~~ 243 (254)
T PRK14057 226 RDDRLVENTRSWRAMFKV 243 (254)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 23567888877765443
No 187
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=69.22 E-value=81 Score=33.63 Aligned_cols=142 Identities=13% Similarity=0.075 Sum_probs=91.9
Q ss_pred hHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecC--hHhHhhHHHHHHhCCEEEEeCCCCcC
Q 036921 208 DKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIEN--IEGLTHFDEILQAADGIILSRGNLGI 285 (527)
Q Consensus 208 D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt--~~av~nldeI~~~sDgImIaRgDLg~ 285 (527)
..+.|. ...+.|+|.|-+. |.+.++++.++.+-.. -.++++|-|-- ..| +..+-.-.|++=|-||.+|
T Consensus 44 tv~Qi~-~L~~aGceiVRva-v~~~~~a~al~~I~~~----~~iPlvADIHFd~~lA---l~a~~~G~~~iRINPGNig- 113 (360)
T PRK00366 44 TVAQIK-RLARAGCEIVRVA-VPDMEAAAALPEIKKQ----LPVPLVADIHFDYRLA---LAAAEAGADALRINPGNIG- 113 (360)
T ss_pred HHHHHH-HHHHcCCCEEEEc-cCCHHHHHhHHHHHHc----CCCCEEEecCCCHHHH---HHHHHhCCCEEEECCCCCC-
Confidence 344454 3467899999998 7899999999886654 35899999833 333 3444444799999999985
Q ss_pred CCCchhHHHHHHHHHHHHHHcCCcEEE---ecchhhhhcC--CCCChHhh-----hhHHHHHHhCCcEEEeCCccccCCC
Q 036921 286 DLPPEKVFLFQKAALYKCNMAGKPAVV---TRVVDSMTDN--LRPTRAEA-----TDVANAVLDGSDAILLGAETLRGLY 355 (527)
Q Consensus 286 e~~~~~v~~~qk~Ii~~c~~~gKpvi~---Tq~LeSM~~~--p~PtraEv-----~Dv~nav~~g~D~imLs~Eta~G~y 355 (527)
....--+.++++|+++|+|+=+ ..=|+.-... ..||..-+ ..+.-+-..|++=+.+|--.+ .
T Consensus 114 -----~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~KsS---~ 185 (360)
T PRK00366 114 -----KRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVKAS---D 185 (360)
T ss_pred -----chHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC---C
Confidence 4456678999999999999644 4445443332 23443222 222334556888888874433 4
Q ss_pred hHHHHHHHHHHH
Q 036921 356 PVETISIVGKIC 367 (527)
Q Consensus 356 P~e~V~~~~~i~ 367 (527)
|.++++.-+.+.
T Consensus 186 v~~~i~ayrlla 197 (360)
T PRK00366 186 VQDLIAAYRLLA 197 (360)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
No 188
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=68.81 E-value=1.4e+02 Score=30.50 Aligned_cols=120 Identities=11% Similarity=0.069 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccc
Q 036921 297 KAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFN 375 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~ 375 (527)
..+...|+.+|.|+++ . |..+........-..|++.+...++ +.| -++.+...++.++-.. +
T Consensus 72 ~alA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~v~~v~~~---~~~-~~~~~~a~~l~~~~~~-~- 134 (290)
T TIGR01138 72 IALAMIAALKGYRMKLLM-----------PDNMSQERKAAMRAYGAELILVTKE---EGM-EGARDLALELANRGEG-K- 134 (290)
T ss_pred HHHHHHHHHcCCeEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHHhCCC-C-
Confidence 3456689999999887 3 3333333445555679998877642 112 3455555555443221 1
Q ss_pred hhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 376 QDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK--ASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
|...|.+ +..+.--....+.++.++++ .+.||+.+-+|.|+.-+++ +.|...|+++-+
T Consensus 135 ~~~~~~~-------~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep 198 (290)
T TIGR01138 135 LLDQFNN-------PDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQP 198 (290)
T ss_pred CCCccCC-------cccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 1111211 11111112334556666664 7899999999988655544 589999999843
No 189
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=68.73 E-value=9.3 Score=42.48 Aligned_cols=46 Identities=22% Similarity=0.432 Sum_probs=39.3
Q ss_pred EecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHH
Q 036921 34 GTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAA 79 (527)
Q Consensus 34 ~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~ 79 (527)
+.+|..-++.+.++.|+++|+++.=+|.+||......+.|+.||+.
T Consensus 234 aavg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~ 279 (495)
T PTZ00314 234 AAISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSN 279 (495)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhh
Confidence 5678766778999999999999999999999888777777777763
No 190
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=68.71 E-value=13 Score=41.60 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=75.9
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHHc----CC-CCCceEEEeecChHhHhhHHHHHHhC-C-------------------
Q 036921 220 KIDFLSLSYTRHAEDVRQAREYLSKL----GD-LSQTQIFAKIENIEGLTHFDEILQAA-D------------------- 274 (527)
Q Consensus 220 g~d~I~~sfV~s~~dv~~lr~~l~~~----~~-~~~~~IiaKIEt~~av~nldeI~~~s-D------------------- 274 (527)
+--|+.+|+++++++++--.+++... |. ...+++-..|||..|.-|++||+..- |
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~ 282 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKT 282 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHH
Confidence 34578999999999999887765322 22 14589999999999999999999864 2
Q ss_pred ------EEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecch----hhhhcCCCCChHhhhhHHHHHHhCCcE
Q 036921 275 ------GIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVV----DSMTDNLRPTRAEATDVANAVLDGSDA 343 (527)
Q Consensus 275 ------gImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~L----eSM~~~p~PtraEv~Dv~nav~~g~D~ 343 (527)
.++=.|..++++.|+ +-.+.+..++.|++.|-..+. ..-+ .-|..|+.--..=..|=..-+.+|+||
T Consensus 283 ~~~~~~~vlPdR~~v~m~~pf--m~aY~~llv~tch~Rga~a~gGmaa~ip~~~d~~~~~~a~~~v~~dK~rE~~~G~dg 360 (526)
T PF01274_consen 283 FRNRPDFVLPDRKQVTMTQPF--MRAYEDLLVRTCHRRGAHAMGGMAAFIPIGKDPWANPDAMAKVRADKEREAKAGFDG 360 (526)
T ss_dssp TCCGCCBB---GGGGGCGSHH--HHHHHHHHHHHHHHTT-HHHTTCTTTSEEEEEEHHBTTCHHHHHHHTHHHHHTT-SE
T ss_pred hhhCCCccccccccccccCHH--HHHHHHHHHHHHhhcCCccccCCccccCCCCChhhhHHHHHHHHHHHHHHHhcCCCc
Confidence 233345555555554 667889999999999976543 1111 001111111111112223367789999
Q ss_pred EEeC
Q 036921 344 ILLG 347 (527)
Q Consensus 344 imLs 347 (527)
-+..
T Consensus 361 ~WVa 364 (526)
T PF01274_consen 361 AWVA 364 (526)
T ss_dssp EEES
T ss_pred cccc
Confidence 8886
No 191
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=68.63 E-value=46 Score=38.41 Aligned_cols=180 Identities=12% Similarity=0.116 Sum_probs=103.7
Q ss_pred CCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHH---HHHHHHcCCCCCceEEEeecC--hH
Q 036921 187 GSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQA---REYLSKLGDLSQTQIFAKIEN--IE 261 (527)
Q Consensus 187 ~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~l---r~~l~~~~~~~~~~IiaKIEt--~~ 261 (527)
+++-.|.+-.-.-.-..=++.-.+.+. ...+.|+|+|-+. |.+.++++.+ ++.|...| .+++++|-|-- ..
T Consensus 91 GG~~PI~VQSMt~t~T~D~eatv~Qi~-~l~~aGceiVRvt-v~~~~~A~al~~I~~~L~~~g--~~iPLVADIHF~~~~ 166 (733)
T PLN02925 91 GSEHPIRIQTMTTTDTKDVEATVDQVM-RIADKGADIVRIT-VQGKKEADACFEIKNTLVQKG--YNIPLVADIHFAPSV 166 (733)
T ss_pred CCCCceEEEecCCCCcccHHHHHHHHH-HHHHcCCCEEEEc-CCCHHHHHhHHHHHHHHhhcC--CCCCEEEecCCCHHH
Confidence 555555543222111111334455554 4578999987766 5555555554 55566667 77999999943 33
Q ss_pred hHhhHHHHHHhCCEEEEeCCCCcCCC---------------CchhHHHHHHHHHHHHHHcCCcEEE-ec--chhhhh-cC
Q 036921 262 GLTHFDEILQAADGIILSRGNLGIDL---------------PPEKVFLFQKAALYKCNMAGKPAVV-TR--VVDSMT-DN 322 (527)
Q Consensus 262 av~nldeI~~~sDgImIaRgDLg~e~---------------~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq--~LeSM~-~~ 322 (527)
|+ +-++..|.|=|-||.++-.- .++++..--..++.+|+++|+|+=+ ++ =|+.=+ ..
T Consensus 167 Al----~a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~ 242 (733)
T PLN02925 167 AL----RVAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSY 242 (733)
T ss_pred HH----HHHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHHHHH
Confidence 33 33334899999999998662 1234444445799999999999766 43 222211 11
Q ss_pred CCCChHhh-----hhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhc-cchh
Q 036921 323 LRPTRAEA-----TDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKV-FNQD 377 (527)
Q Consensus 323 p~PtraEv-----~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~-~~~~ 377 (527)
--+|..-+ .-+.-+-..|++=+.+|-- ...|...|...+.+..+.++. ++|.
T Consensus 243 yGdtp~gmVeSAle~~~i~e~~~f~diviS~K---sSn~~~~V~AyR~La~~L~~~g~~yP 300 (733)
T PLN02925 243 YGDSPRGMVESAFEFARICRKLDYHNFVFSMK---ASNPVVMVQAYRLLVAEMYVLGWDYP 300 (733)
T ss_pred hCCChHHHHHHHHHHHHHHHHCCCCcEEEEEE---cCChHHHHHHHHHHHHHHHhcCCCCc
Confidence 11222111 1222255678888888844 446777777777776664432 4443
No 192
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=68.43 E-value=76 Score=31.40 Aligned_cols=128 Identities=16% Similarity=0.129 Sum_probs=72.8
Q ss_pred cccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEe--ecChHhHhhHHHHH-HhCCEEEEeCCCCcCCCCchhH
Q 036921 216 GVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAK--IENIEGLTHFDEIL-QAADGIILSRGNLGIDLPPEKV 292 (527)
Q Consensus 216 ~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaK--IEt~~av~nldeI~-~~sDgImIaRgDLg~e~~~~~v 292 (527)
++..|+|+|-++ ++..++.++|+.+.. + .+|.- ..+.+.. .+-. .-+|.+.+|+= +. ......-
T Consensus 83 A~~~~adGVHLg--~~d~~~~~~r~~~~~-----~-~iiG~s~~~s~~~a---~~A~~~gaDYv~~Gpv-~t-~tK~~~~ 149 (221)
T PRK06512 83 AGRVKADGLHIE--GNLAALAEAIEKHAP-----K-MIVGFGNLRDRHGA---MEIGELRPDYLFFGKL-GA-DNKPEAH 149 (221)
T ss_pred HHHhCCCEEEEC--ccccCHHHHHHhcCC-----C-CEEEecCCCCHHHH---HHhhhcCCCEEEECCC-CC-CCCCCCC
Confidence 467778888777 222346666655531 1 23332 2222211 1111 23599999986 32 1111100
Q ss_pred HHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHH
Q 036921 293 FLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 293 ~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
|.--..+-+.|+....||+. ..+ +. .++......|+|++-..+.-..-..|.++++-+.+++.+
T Consensus 150 p~gl~~l~~~~~~~~iPvvAIGGI----------~~---~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~ 214 (221)
T PRK06512 150 PRNLSLAEWWAEMIEIPCIVQAGS----------DL---ASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDE 214 (221)
T ss_pred CCChHHHHHHHHhCCCCEEEEeCC----------CH---HHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhh
Confidence 10011111356677899998 764 23 344555667999999998888788899999988887653
No 193
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=67.92 E-value=13 Score=40.74 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=42.1
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHH
Q 036921 29 MTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKA 78 (527)
Q Consensus 29 ~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~ 78 (527)
+-.+=+.+|..-.+.+..+.|+++|++++-++.+||..+...++|+.+|+
T Consensus 212 ~l~V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~ 261 (450)
T TIGR01302 212 RLIVGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKK 261 (450)
T ss_pred CEEEEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHH
Confidence 34455678887778899999999999999999999998888888877776
No 194
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=67.72 E-value=11 Score=39.68 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=43.8
Q ss_pred EEEEecCCCCCCHHHHHHHHHcC--CCeEEeecCCCCHHHHHHHHHHHHHH
Q 036921 31 KIVGTLGPKSRSVDVISGCLKAG--MSVARFDFSWGNTEYHQETLENLKAA 79 (527)
Q Consensus 31 kIi~TiGp~~~~~~~l~~l~~~G--~~v~RiN~shg~~e~~~~~i~~ir~~ 79 (527)
.+.+.+|-..++.|.++.|+++| .|+.=|+.|||..+...++|+.||+.
T Consensus 97 ~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~ 147 (343)
T TIGR01305 97 NVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREA 147 (343)
T ss_pred eEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhh
Confidence 34557899889999999999996 99999999999999999999999974
No 195
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=67.52 E-value=1.2e+02 Score=28.99 Aligned_cols=108 Identities=19% Similarity=0.198 Sum_probs=67.9
Q ss_pred HhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEE-eecChHhHhhHHHHHHh-CCEEEEeCCCC
Q 036921 206 DKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFA-KIENIEGLTHFDEILQA-ADGIILSRGNL 283 (527)
Q Consensus 206 ~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~Iia-KIEt~~av~nldeI~~~-sDgImIaRgDL 283 (527)
..+...+.+.+++.|++.|-+.+ ++......++.+-...+ +..|-+ -|=+.+ ++++.+.. +|+++.+-.|
T Consensus 15 ~~~~~~~~~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~---~~~iGag~v~~~~---~~~~a~~~Ga~~i~~p~~~- 86 (190)
T cd00452 15 AEDALALAEALIEGGIRAIEITL-RTPGALEAIRALRKEFP---EALIGAGTVLTPE---QADAAIAAGAQFIVSPGLD- 86 (190)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeC-CChhHHHHHHHHHHHCC---CCEEEEEeCCCHH---HHHHHHHcCCCEEEcCCCC-
Confidence 33333333466889999999985 77777777776655432 233222 232333 45555554 4888754322
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 284 GIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 284 g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
..+++.|+..|.|++. ...-.+++..|...|+|.+.+.
T Consensus 87 -------------~~~~~~~~~~~~~~i~-------------gv~t~~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 87 -------------PEVVKAANRAGIPLLP-------------GVATPTEIMQALELGADIVKLF 124 (190)
T ss_pred -------------HHHHHHHHHcCCcEEC-------------CcCCHHHHHHHHHCCCCEEEEc
Confidence 3688999999999875 1112345677778899999984
No 196
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=67.45 E-value=8.3 Score=41.75 Aligned_cols=52 Identities=12% Similarity=0.205 Sum_probs=43.8
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHH
Q 036921 28 AMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAA 79 (527)
Q Consensus 28 ~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~ 79 (527)
.+-..-|.+|+.-++.+.++.|+++|+|+.=|..+||..+...++++++|+.
T Consensus 140 ~~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~ 191 (404)
T PRK06843 140 NKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTK 191 (404)
T ss_pred cCeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhh
Confidence 3455777788876677899999999999999999999988888888888863
No 197
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=67.01 E-value=1.1e+02 Score=31.08 Aligned_cols=106 Identities=22% Similarity=0.146 Sum_probs=71.4
Q ss_pred HHHHhhcccccccEEEe-----cCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHh---hHHHHHHh-CCEEEEeC
Q 036921 210 EVISSWGVQNKIDFLSL-----SYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLT---HFDEILQA-ADGIILSR 280 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~-----sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~---nldeI~~~-sDgImIaR 280 (527)
.++.....+.|++.|.+ -|=.+.+|++.+++.. +++|+.| +=+- .+++.... +|+|.+.-
T Consensus 73 ~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-------~iPvl~k----dfi~~~~qi~~a~~~GAD~VlLi~ 141 (260)
T PRK00278 73 VEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-------SLPVLRK----DFIIDPYQIYEARAAGADAILLIV 141 (260)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-------CCCEEee----eecCCHHHHHHHHHcCCCEEEEEe
Confidence 33333446789999977 5668999999998853 3566643 1222 23333332 59998876
Q ss_pred CCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCC
Q 036921 281 GNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA 348 (527)
Q Consensus 281 gDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~ 348 (527)
.+|. +.--+.++..|+..|.-+++ ++ +.+|+ ..|...|+|.+..++
T Consensus 142 ~~l~--------~~~l~~li~~a~~lGl~~lvevh-----------~~~E~---~~A~~~gadiIgin~ 188 (260)
T PRK00278 142 AALD--------DEQLKELLDYAHSLGLDVLVEVH-----------DEEEL---ERALKLGAPLIGINN 188 (260)
T ss_pred ccCC--------HHHHHHHHHHHHHcCCeEEEEeC-----------CHHHH---HHHHHcCCCEEEECC
Confidence 6654 23567889999999999998 65 44444 456677999988764
No 198
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=66.49 E-value=1.5e+02 Score=29.74 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=49.8
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCC--CceEEEeecChHhHhhHHHHHHhCCEEEE
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLS--QTQIFAKIENIEGLTHFDEILQAADGIIL 278 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~--~~~IiaKIEt~~av~nldeI~~~sDgImI 278 (527)
.+.+..| .++|+|+|.+- +++..++.+.-+.+++.| . ...+.-+=+| .++.++.++...|.|+|
T Consensus 81 ~~~i~~~-~~aGad~It~H-~Ea~~~~~~~l~~Ik~~g--~~~kaGlalnP~T--p~~~i~~~l~~vD~VLi 146 (228)
T PRK08091 81 FEVAKAC-VAAGADIVTLQ-VEQTHDLALTIEWLAKQK--TTVLIGLCLCPET--PISLLEPYLDQIDLIQI 146 (228)
T ss_pred HHHHHHH-HHhCCCEEEEc-ccCcccHHHHHHHHHHCC--CCceEEEEECCCC--CHHHHHHHHhhcCEEEE
Confidence 3455534 78999998887 576677877778888888 5 6667777777 67889999999998888
No 199
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=66.42 E-value=1.1e+02 Score=31.00 Aligned_cols=123 Identities=13% Similarity=0.081 Sum_probs=72.2
Q ss_pred HHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 297 KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
.-+...|++.|.|+.+- .|..+...-+...-..|++.+...+... + ...++++...++.++-+ .+.+
T Consensus 66 ~alA~~a~~~G~~~~i~----------vp~~~~~~k~~~~~~~Ga~v~~~~~~~~-~-~~~~~~~~a~~~~~~~~-~~~~ 132 (291)
T cd01561 66 IGLAMVAAAKGYRFIIV----------MPETMSEEKRKLLRALGAEVILTPEAEA-D-GMKGAIAKARELAAETP-NAFW 132 (291)
T ss_pred HHHHHHHHHcCCeEEEE----------ECCCCCHHHHHHHHHcCCEEEEeCCCCc-C-CHHHHHHHHHHHHhhCC-CcEE
Confidence 35667899999998871 1333334445556667999887763311 1 23666666666554311 1111
Q ss_pred hhhhhhhhcccCCCCChHHHHH-HHHHHHHHhcC--CcEEEEECCCcHHHHHHH----hhCCCCCEEEEee
Q 036921 377 DLYFKKTVKCVGEPMTHLESIA-SSAVRAAIKVK--ASVIICFTSSGRAARLIA----KYRPTMPVLSVVI 440 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia-~~av~~a~~~~--a~~Ivv~T~sG~tA~~is----~~RP~~PIiAv~~ 440 (527)
...|. .| ...+.-. ..+.++.++++ .+.||+.+-+|.++.-++ .+.|...|+++-+
T Consensus 133 ~~~~~-------~p-~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~ 195 (291)
T cd01561 133 LNQFE-------NP-ANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDP 195 (291)
T ss_pred ecCCC-------Cc-hHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 11110 01 1122222 34667777765 799999999999865544 4679999999854
No 200
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.25 E-value=95 Score=30.59 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=69.6
Q ss_pred EEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhC-C--EEEEeCCCCcCCCCchhHH-------
Q 036921 224 LSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAA-D--GIILSRGNLGIDLPPEKVF------- 293 (527)
Q Consensus 224 I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~s-D--gImIaRgDLg~e~~~~~v~------- 293 (527)
+.+=...++++...+-+.|-+.|. + .+=.-.-|+.+++.+.++.+.. | .++||-|= -+..+.+.
T Consensus 16 i~vir~~~~~~a~~~~~al~~~Gi--~-~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGT---V~~~~~~~~a~~aGA 89 (213)
T PRK06552 16 VAVVRGESKEEALKISLAVIKGGI--K-AIEVTYTNPFASEVIKELVELYKDDPEVLIGAGT---VLDAVTARLAILAGA 89 (213)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCC--C-EEEEECCCccHHHHHHHHHHHcCCCCCeEEeeee---CCCHHHHHHHHHcCC
Confidence 444445788888888888877662 2 1222335788888888888764 2 48887653 22333332
Q ss_pred ------HHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEe
Q 036921 294 ------LFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (527)
Q Consensus 294 ------~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imL 346 (527)
.....+++.|+++|.|++= +. -.+++..|...|+|.+-+
T Consensus 90 ~FivsP~~~~~v~~~~~~~~i~~iPG~~--------------T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 90 QFIVSPSFNRETAKICNLYQIPYLPGCM--------------TVTEIVTALEAGSEIVKL 135 (213)
T ss_pred CEEECCCCCHHHHHHHHHcCCCEECCcC--------------CHHHHHHHHHcCCCEEEE
Confidence 3346899999999999985 43 235567778899999998
No 201
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=66.25 E-value=60 Score=33.15 Aligned_cols=95 Identities=19% Similarity=0.133 Sum_probs=56.7
Q ss_pred hHHHHHHh--CCEEEEeCCCCc--CCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHH-HHHH
Q 036921 265 HFDEILQA--ADGIILSRGNLG--IDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVA-NAVL 338 (527)
Q Consensus 265 nldeI~~~--sDgImIaRgDLg--~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~-nav~ 338 (527)
.++..++. .||+++. |=-| ..+..++-..+-+..++.++ -..|+|+ +. ..+-.|+.+.+ .|..
T Consensus 26 ~i~~l~~~~Gv~gi~~~-GstGE~~~Lt~~Er~~~~~~~~~~~~-~~~~viagv~---------~~~~~~ai~~a~~a~~ 94 (288)
T cd00954 26 IVDYLIEKQGVDGLYVN-GSTGEGFLLSVEERKQIAEIVAEAAK-GKVTLIAHVG---------SLNLKESQELAKHAEE 94 (288)
T ss_pred HHHHHHhcCCCCEEEEC-cCCcCcccCCHHHHHHHHHHHHHHhC-CCCeEEeccC---------CCCHHHHHHHHHHHHH
Confidence 34556666 5999884 3222 23333443333344444432 2468887 43 33445555554 5788
Q ss_pred hCCcEEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 339 DGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 339 ~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
.|+|++|+..--....-+-+.+++...|+..+
T Consensus 95 ~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 95 LGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred cCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 89999998755443334578888999998766
No 202
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=65.14 E-value=94 Score=31.10 Aligned_cols=121 Identities=12% Similarity=0.035 Sum_probs=68.6
Q ss_pred CCHhhHHHHHhhcccccccEEEec----------------CCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHH
Q 036921 204 LSDKDKEVISSWGVQNKIDFLSLS----------------YTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFD 267 (527)
Q Consensus 204 lt~~D~~di~~~~~~~g~d~I~~s----------------fV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nld 267 (527)
-|..+...+.+. +..++|+|=+. ..++++-+.++.+.+.. .+.+|.+||=--.--.+..
T Consensus 77 ~~~ee~~~~a~~-v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~----~~~PVsvKiR~~~~~~~~~ 151 (231)
T TIGR00736 77 VDLEEAYDVLLT-IAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE----LNKPIFVKIRGNCIPLDEL 151 (231)
T ss_pred CCHHHHHHHHHH-HhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc----CCCcEEEEeCCCCCcchHH
Confidence 345555555433 55678887765 34566667776666663 3578999994211001222
Q ss_pred HHHHh-----CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHc-C-CcEEE-ecchhhhhcCCCCChHhhhhHHHHHHh
Q 036921 268 EILQA-----ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMA-G-KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLD 339 (527)
Q Consensus 268 eI~~~-----sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~-g-Kpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~ 339 (527)
++++. +|+|.|..+.-| -+.+.-+.|+..+++ + +|+|- ..+ -|. .|+...+..
T Consensus 152 ~~a~~l~~aGad~i~Vd~~~~g-------~~~a~~~~I~~i~~~~~~ipIIgNGgI---------~s~---eda~e~l~~ 212 (231)
T TIGR00736 152 IDALNLVDDGFDGIHVDAMYPG-------KPYADMDLLKILSEEFNDKIIIGNNSI---------DDI---ESAKEMLKA 212 (231)
T ss_pred HHHHHHHHcCCCEEEEeeCCCC-------CchhhHHHHHHHHHhcCCCcEEEECCc---------CCH---HHHHHHHHh
Confidence 34332 399988532211 122334455555554 3 89887 553 344 455555567
Q ss_pred CCcEEEeCC
Q 036921 340 GSDAILLGA 348 (527)
Q Consensus 340 g~D~imLs~ 348 (527)
|+|+||+..
T Consensus 213 GAd~VmvgR 221 (231)
T TIGR00736 213 GADFVSVAR 221 (231)
T ss_pred CCCeEEEcH
Confidence 999999973
No 203
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=64.71 E-value=53 Score=33.17 Aligned_cols=110 Identities=23% Similarity=0.215 Sum_probs=64.5
Q ss_pred CcEEE-ecchhhhhcCCCCChH-------hh-----hhHHHHHHhCCcEEEeCCc--cccCCC-hHHHHHHHHHHHHHHh
Q 036921 308 KPAVV-TRVVDSMTDNLRPTRA-------EA-----TDVANAVLDGSDAILLGAE--TLRGLY-PVETISIVGKICAEAE 371 (527)
Q Consensus 308 Kpvi~-Tq~LeSM~~~p~Ptra-------Ev-----~Dv~nav~~g~D~imLs~E--ta~G~y-P~e~V~~~~~i~~~aE 371 (527)
||+|- -+++ |.|.-. |+ .|.......|+|++|+.+. +..-++ +-+++..|..|+++.-
T Consensus 8 k~vIGvvHL~------PLPGsp~~~~~~~~vid~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~ 81 (263)
T COG0434 8 KPVIGVVHLL------PLPGSPYDAGSLEAVIDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVV 81 (263)
T ss_pred CceEEEEecC------CCCCCccccCCHHHHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHH
Confidence 57776 6554 677333 44 4444566779999999753 222221 3588999999998765
Q ss_pred hccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEE-------EEECCCcHH---HHHHHhhCCCCC
Q 036921 372 KVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVI-------ICFTSSGRA---ARLIAKYRPTMP 434 (527)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~I-------vv~T~sG~t---A~~is~~RP~~P 434 (527)
+...-... .+-.-.=+.+|..+|...+|+.| +.+|..|-- |..+.|||++.+
T Consensus 82 r~v~iPvG-----------vNVLrNd~vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~ 143 (263)
T COG0434 82 REVSIPVG-----------VNVLRNDAVAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG 143 (263)
T ss_pred Hhccccce-----------eeeeccccHHHHHHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc
Confidence 54332211 11111123345666777889988 356666543 555666665544
No 204
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=64.46 E-value=1.1e+02 Score=33.57 Aligned_cols=120 Identities=15% Similarity=0.130 Sum_probs=68.4
Q ss_pred HHHHhhcccccccEEEecC-CCCHHHHHHHHHHHHHcCC--------CCCceEEEeecChHhHhh---------HHHHHH
Q 036921 210 EVISSWGVQNKIDFLSLSY-TRHAEDVRQAREYLSKLGD--------LSQTQIFAKIENIEGLTH---------FDEILQ 271 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~sf-V~s~~dv~~lr~~l~~~~~--------~~~~~IiaKIEt~~av~n---------ldeI~~ 271 (527)
+.+. ..++.|+..|..|. ......+...| ..|. ...-.|++|+-+++-... ++.+.+
T Consensus 86 ~~v~-l~le~gV~~ve~sa~~~~~p~~~~~r----~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~ 160 (418)
T cd04742 86 GLVD-LFLRHGVRVVEASAFMQLTPALVRYR----AKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLA 160 (418)
T ss_pred HHHH-HHHHcCCCEEEeccccCCCcchhhHH----hcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHH
Confidence 3443 56899999988874 33322332222 2221 011359999876544311 123322
Q ss_pred h----------------CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHc--------CCcEEE-ecchhhhhcCCCCC
Q 036921 272 A----------------ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMA--------GKPAVV-TRVVDSMTDNLRPT 326 (527)
Q Consensus 272 ~----------------sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~--------gKpvi~-Tq~LeSM~~~p~Pt 326 (527)
. +|.|.+. .|=|-+.+-......--.|.+.+.+. ..|||. ..+-
T Consensus 161 ~G~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~---------- 229 (418)
T cd04742 161 EGKITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG---------- 229 (418)
T ss_pred cCCCCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC----------
Confidence 2 5888887 77777765432333333344433322 489988 6642
Q ss_pred hHhhhhHHHHHHhCCcEEEeC
Q 036921 327 RAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 327 raEv~Dv~nav~~g~D~imLs 347 (527)
.-.+++.|...|+|++.+.
T Consensus 230 --tg~~vaAA~alGAd~V~~G 248 (418)
T cd04742 230 --TPEAAAAAFALGADFIVTG 248 (418)
T ss_pred --CHHHHHHHHHcCCcEEeec
Confidence 3356788999999999884
No 205
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=64.31 E-value=1.7e+02 Score=29.83 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=53.5
Q ss_pred CceEEEee--cChHhHhhHHHHHHh----CCEEEEeCCC-----CcCCCCchhHHHHHHHHHHHHHHc-CCcEEE-ecch
Q 036921 250 QTQIFAKI--ENIEGLTHFDEILQA----ADGIILSRGN-----LGIDLPPEKVFLFQKAALYKCNMA-GKPAVV-TRVV 316 (527)
Q Consensus 250 ~~~IiaKI--Et~~av~nldeI~~~----sDgImIaRgD-----Lg~e~~~~~v~~~qk~Ii~~c~~~-gKpvi~-Tq~L 316 (527)
+.+++++| .+++.+...-+.++. +|+|=+-=|= -|.++ ..-+..-.+|+++.++. ++|+.+ ..
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l--~~~~~~~~eiv~~vr~~~~~pv~vKi~-- 165 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAI--GQDPELSADVVKAVKDKTDVPVFAKLS-- 165 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCcccc--ccCHHHHHHHHHHHHHhcCCCEEEECC--
Confidence 35799999 566666666666652 5777663110 01111 12234446777777765 899998 42
Q ss_pred hhhhcCCCCChHhhhhHHH-HHHhCCcEEEeCC
Q 036921 317 DSMTDNLRPTRAEATDVAN-AVLDGSDAILLGA 348 (527)
Q Consensus 317 eSM~~~p~PtraEv~Dv~n-av~~g~D~imLs~ 348 (527)
|+-.|..+++. +...|+|++.+++
T Consensus 166 --------~~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 166 --------PNVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred --------CChhhHHHHHHHHHHcCCCEEEEEc
Confidence 45456666665 4567999999875
No 206
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=64.27 E-value=48 Score=33.22 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=58.2
Q ss_pred HHHHhhcccccccEEEe---------------cCCCCHHHHHHHHHHHHHcCCCC--CceEEEeecCh--------HhHh
Q 036921 210 EVISSWGVQNKIDFLSL---------------SYTRHAEDVRQAREYLSKLGDLS--QTQIFAKIENI--------EGLT 264 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~---------------sfV~s~~dv~~lr~~l~~~~~~~--~~~IiaKIEt~--------~av~ 264 (527)
+.++ ...+.|+++|.+ +.+...+.+..++....... . +..|+|..|.. ++++
T Consensus 88 ~~v~-~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~--~~~~~~IiARTDa~~~~~~~~~eai~ 164 (243)
T cd00377 88 RTVR-ELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARD--DLPDFVIIARTDALLAGEEGLDEAIE 164 (243)
T ss_pred HHHH-HHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHh--ccCCeEEEEEcCchhccCCCHHHHHH
Confidence 3343 447799999999 55666666777777666554 4 78999996663 3444
Q ss_pred hHHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 265 HFDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 265 nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
....-.++ +|++|+-... -.+.+-+.+++...|+.+
T Consensus 165 Ra~ay~~AGAD~v~v~~~~------------~~~~~~~~~~~~~~Pl~~ 201 (243)
T cd00377 165 RAKAYAEAGADGIFVEGLK------------DPEEIRAFAEAPDVPLNV 201 (243)
T ss_pred HHHHHHHcCCCEEEeCCCC------------CHHHHHHHHhcCCCCEEE
Confidence 55555555 6999994222 125555666678899886
No 207
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=64.05 E-value=98 Score=31.21 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=54.6
Q ss_pred CCEEEEeCCCCc--CCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHH-HHHhCCcEEEeCC
Q 036921 273 ADGIILSRGNLG--IDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLGA 348 (527)
Q Consensus 273 sDgImIaRgDLg--~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n-av~~g~D~imLs~ 348 (527)
.|||++. |--| ..+..++-..+.+.+.+.++ -..|+++ +. .++-.|..+.+. |-..|+|++|+..
T Consensus 32 v~gi~~~-GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 32 VDGLVVL-GTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGVG---------ANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred CCEEEEC-CCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEecC---------CccHHHHHHHHHHHHHcCCCEEEECC
Confidence 4899874 3322 33444554444455555443 2478887 53 445566766665 4555999999976
Q ss_pred ccccCCChHHHHHHHHHHHHHHh
Q 036921 349 ETLRGLYPVETISIVGKICAEAE 371 (527)
Q Consensus 349 Eta~G~yP~e~V~~~~~i~~~aE 371 (527)
=.-...-+-+.++....|+..+.
T Consensus 101 P~y~~~~~~~~~~~~~~ia~~~~ 123 (281)
T cd00408 101 PYYNKPSQEGIVAHFKAVADASD 123 (281)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCC
Confidence 54444446788888888887643
No 208
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=63.76 E-value=38 Score=34.51 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=48.8
Q ss_pred hccccc-ccEEEecCCCCH--HHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeC-----CCCcCC
Q 036921 215 WGVQNK-IDFLSLSYTRHA--EDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSR-----GNLGID 286 (527)
Q Consensus 215 ~~~~~g-~d~I~~sfV~s~--~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaR-----gDLg~e 286 (527)
.+...+ +|.|++|=..+. -|...++.+-...+ .-+.+++ +--..+|+.++++.+||++|+- |+....
T Consensus 165 ~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~--~~Pvllg---gGvt~eNv~e~l~~adGviVgS~~K~~G~~~n~ 239 (257)
T TIGR00259 165 DTVERGLADAVILSGKTTGTEVDLELLKLAKETVK--DTPVLAG---SGVNLENVEELLSIADGVIVATTIKKDGVFNNF 239 (257)
T ss_pred HHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccC--CCeEEEE---CCCCHHHHHHHHhhCCEEEECCCcccCCccCCC
Confidence 334455 999999997776 44555554322222 2234444 4445689999999999999974 444334
Q ss_pred CCchhHHHHHHH
Q 036921 287 LPPEKVFLFQKA 298 (527)
Q Consensus 287 ~~~~~v~~~qk~ 298 (527)
...+++-.+.+.
T Consensus 240 ~D~~rV~~Fm~~ 251 (257)
T TIGR00259 240 VDQARVSQFVEK 251 (257)
T ss_pred cCHHHHHHHHHH
Confidence 555565554443
No 209
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=63.50 E-value=34 Score=36.44 Aligned_cols=89 Identities=25% Similarity=0.362 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCceEEEe-ecChHhHhhHHHHHHh-CCEEEEe-CCCCcCCC--CchhHHHHHHHHHHHHHH
Q 036921 231 HAEDVRQAREYLSKLGDLSQTQIFAK-IENIEGLTHFDEILQA-ADGIILS-RGNLGIDL--PPEKVFLFQKAALYKCNM 305 (527)
Q Consensus 231 s~~dv~~lr~~l~~~~~~~~~~IiaK-IEt~~av~nldeI~~~-sDgImIa-RgDLg~e~--~~~~v~~~qk~Ii~~c~~ 305 (527)
+.+++.++++.. +.+|+.| |-++ +......+. +|+|.|. -| |..+ +...+ ..+.+.+++
T Consensus 209 ~~~~l~~lr~~~-------~~PvivKgv~~~---~dA~~a~~~G~d~I~vsnhG--Gr~ld~~~~~~----~~l~~i~~a 272 (351)
T cd04737 209 SPADIEFIAKIS-------GLPVIVKGIQSP---EDADVAINAGADGIWVSNHG--GRQLDGGPASF----DSLPEIAEA 272 (351)
T ss_pred CHHHHHHHHHHh-------CCcEEEecCCCH---HHHHHHHHcCCCEEEEeCCC--CccCCCCchHH----HHHHHHHHH
Confidence 788888888754 3589999 3222 222233333 4999993 11 2221 11111 112222233
Q ss_pred c--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 306 A--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 306 ~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
. ..|+|. ..+ -.-.|+..++..|||++|+.
T Consensus 273 ~~~~i~vi~dGGI------------r~g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 273 VNHRVPIIFDSGV------------RRGEHVFKALASGADAVAVG 305 (351)
T ss_pred hCCCCeEEEECCC------------CCHHHHHHHHHcCCCEEEEC
Confidence 3 489998 664 24579999999999999986
No 210
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=63.37 E-value=69 Score=33.79 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=66.8
Q ss_pred cccccEEEecCC----------CCHHHHHHHHHHHHHcCCCC----CceEEEeecChHhHhhHHHHHHh-----CCEEEE
Q 036921 218 QNKIDFLSLSYT----------RHAEDVRQAREYLSKLGDLS----QTQIFAKIENIEGLTHFDEILQA-----ADGIIL 278 (527)
Q Consensus 218 ~~g~d~I~~sfV----------~s~~dv~~lr~~l~~~~~~~----~~~IiaKIEt~~av~nldeI~~~-----sDgImI 278 (527)
..++|++-+.|- ++++.+.++.+.+.+.- . +++|++||----..+++.++++. +|||.+
T Consensus 167 ~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~--~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~ 244 (344)
T PRK05286 167 YPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQ--AELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIA 244 (344)
T ss_pred HhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHH--hccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEE
Confidence 335999887652 34455666555554431 2 48999999632222245555543 488887
Q ss_pred eCCC-----CcC-----C---C-CchhHHHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCC
Q 036921 279 SRGN-----LGI-----D---L-PPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGS 341 (527)
Q Consensus 279 aRgD-----Lg~-----e---~-~~~~v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~ 341 (527)
-=+- +.. . + |..-.+...+.+-...++. +.|+|- ..+. ...|+..++..||
T Consensus 245 ~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~------------s~eda~e~l~aGA 312 (344)
T PRK05286 245 TNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGID------------SAEDAYEKIRAGA 312 (344)
T ss_pred eCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------------CHHHHHHHHHcCC
Confidence 4221 110 0 1 1122233444444444444 579887 6643 3457788888999
Q ss_pred cEEEeCCcc
Q 036921 342 DAILLGAET 350 (527)
Q Consensus 342 D~imLs~Et 350 (527)
|+|++..-.
T Consensus 313 d~V~v~~~~ 321 (344)
T PRK05286 313 SLVQIYSGL 321 (344)
T ss_pred CHHHHHHHH
Confidence 999998443
No 211
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=63.33 E-value=1.9e+02 Score=29.82 Aligned_cols=114 Identities=13% Similarity=0.164 Sum_probs=71.4
Q ss_pred ceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecch---hhhhcCCCC
Q 036921 251 TQIFAKIENIEGLTHFDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVV---DSMTDNLRP 325 (527)
Q Consensus 251 ~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~L---eSM~~~p~P 325 (527)
++++.......-++.+.+-++. .+-||+..-+| |.++....-+++.+.|+.+|.++-. -..+ |.++....-
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 7888888866655555555544 37899976655 7888888899999999999998775 3332 112111000
Q ss_pred ChHhhhhHHHHHH-hCCcEEEeCCccccCCCh---HHHHHHHHHHHH
Q 036921 326 TRAEATDVANAVL-DGSDAILLGAETLRGLYP---VETISIVGKICA 368 (527)
Q Consensus 326 traEv~Dv~nav~-~g~D~imLs~Eta~G~yP---~e~V~~~~~i~~ 368 (527)
+--...++..++. .|+|.+-.|-=|.-|.|+ .--++.+++|++
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~ 197 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKE 197 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHH
Confidence 0112334466665 799999888667776663 233444444443
No 212
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=63.22 E-value=1.2e+02 Score=28.11 Aligned_cols=119 Identities=16% Similarity=0.090 Sum_probs=62.7
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHH-hCCEEEEeCCC---Cc----CC
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQ-AADGIILSRGN---LG----ID 286 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~-~sDgImIaRgD---Lg----~e 286 (527)
.+.+.|+|++-++.-.. ....+++... ....+-.-+.|.+- +.+... -.|.|++++.. -. ..
T Consensus 67 ~a~~~g~~~vh~~~~~~--~~~~~~~~~~-----~~~~~g~~~~t~~~---~~~~~~~g~d~i~~~~~~~~~~~~~~~~~ 136 (196)
T cd00564 67 LALAVGADGVHLGQDDL--PVAEARALLG-----PDLIIGVSTHSLEE---ALRAEELGADYVGFGPVFPTPTKPGAGPP 136 (196)
T ss_pred HHHHcCCCEEecCcccC--CHHHHHHHcC-----CCCEEEeeCCCHHH---HHHHhhcCCCEEEECCccCCCCCCCCCCC
Confidence 34788999988885322 3334443321 23344444444322 233333 26999987532 11 22
Q ss_pred CCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHH
Q 036921 287 LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIV 363 (527)
Q Consensus 287 ~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~ 363 (527)
.+++.+..+ +.....|++. ..+ +.. ++..+...|+|++.+.+--..-.-|.++++.+
T Consensus 137 ~~~~~~~~~-------~~~~~~pv~a~GGi----------~~~---~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 137 LGLELLREI-------AELVEIPVVAIGGI----------TPE---NAAEVLAAGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCHHHHHHH-------HHhCCCCEEEECCC----------CHH---HHHHHHHcCCCEEEEehHhhcCCCHHHHHHHH
Confidence 233333222 2225799988 553 333 44555567999999875544334566665544
No 213
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=63.02 E-value=79 Score=32.21 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=56.5
Q ss_pred hhcccccccEEEec------CCCCHHHHHHHHH-HHHHcCCCCCceEEEeecC---hHhHhhHHHHHHh-CCEEEEeCCC
Q 036921 214 SWGVQNKIDFLSLS------YTRHAEDVRQARE-YLSKLGDLSQTQIFAKIEN---IEGLTHFDEILQA-ADGIILSRGN 282 (527)
Q Consensus 214 ~~~~~~g~d~I~~s------fV~s~~dv~~lr~-~l~~~~~~~~~~IiaKIEt---~~av~nldeI~~~-sDgImIaRgD 282 (527)
++.++.|+|+|++. +-=|.++=+++-+ ..+..+ .++.|++-+-. .++++....-.+. +|++|+.+-.
T Consensus 26 ~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~--~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~ 103 (285)
T TIGR00674 26 DFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN--GRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPY 103 (285)
T ss_pred HHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC--CCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 47789999999874 3344444444444 444444 56889998842 3344333333332 3999997655
Q ss_pred CcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 283 LGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 283 Lg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
.. ..+-+.+...-+.|.++ .+.|+++
T Consensus 104 y~-~~~~~~i~~~~~~i~~~---~~~pi~l 129 (285)
T TIGR00674 104 YN-KPTQEGLYQHFKAIAEE---VDLPIIL 129 (285)
T ss_pred CC-CCCHHHHHHHHHHHHhc---CCCCEEE
Confidence 43 23445666666666554 4799987
No 214
>PRK07334 threonine dehydratase; Provisional
Probab=62.89 E-value=1.1e+02 Score=32.91 Aligned_cols=116 Identities=15% Similarity=0.218 Sum_probs=71.4
Q ss_pred HHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 298 AALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
-+...|+..|.|+++ . |..+.-..+...-..|++.++.. ...-++++...+++++. .. .|
T Consensus 85 alA~~a~~~G~~~~iv~-----------p~~~~~~k~~~~~~~GA~v~~~~------~~~~~~~~~a~~l~~~~-~~-~~ 145 (403)
T PRK07334 85 GVAYHAQRLGIPATIVM-----------PRFTPTVKVERTRGFGAEVVLHG------ETLDEARAHARELAEEE-GL-TF 145 (403)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhc-CC-Ee
Confidence 566789999999887 2 22222234455566799998653 24566777777665442 11 12
Q ss_pred hhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC-CcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 377 DLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK-ASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
...|. .+ ...+.-...+.++.++++ .+.+|+..-+|.|+.-+++ ++|.+.|+++-+
T Consensus 146 ~~~~~-------~~-~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~ 206 (403)
T PRK07334 146 VHPYD-------DP-AVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQT 206 (403)
T ss_pred cCCCC-------CH-HHHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 11111 01 112333345566666654 6899999999998666655 489999999843
No 215
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=62.48 E-value=13 Score=39.16 Aligned_cols=45 Identities=16% Similarity=0.345 Sum_probs=38.0
Q ss_pred ecCCCCCCHHHHHHHHHcCC--CeEEeecCCCCHHHHHHHHHHHHHH
Q 036921 35 TLGPKSRSVDVISGCLKAGM--SVARFDFSWGNTEYHQETLENLKAA 79 (527)
Q Consensus 35 TiGp~~~~~~~l~~l~~~G~--~v~RiN~shg~~e~~~~~i~~ir~~ 79 (527)
.+|.+.++.+.+.+|+++|+ |+.=++.+||..+..+++|+.||+.
T Consensus 91 ~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~ 137 (326)
T PRK05458 91 SVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKH 137 (326)
T ss_pred EecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhh
Confidence 44555567799999999966 9999999999999999998888863
No 216
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=62.47 E-value=90 Score=30.00 Aligned_cols=117 Identities=20% Similarity=0.176 Sum_probs=61.7
Q ss_pred hHHHHHhhcccccccEEEecCCC-CHHHH-HHHHHHHHH-cCCCCCceEEEeecChHhHhhHHHHHHhC--CEEEEeCCC
Q 036921 208 DKEVISSWGVQNKIDFLSLSYTR-HAEDV-RQAREYLSK-LGDLSQTQIFAKIENIEGLTHFDEILQAA--DGIILSRGN 282 (527)
Q Consensus 208 D~~di~~~~~~~g~d~I~~sfV~-s~~dv-~~lr~~l~~-~~~~~~~~IiaKIEt~~av~nldeI~~~s--DgImIaRgD 282 (527)
+.++++ .+.+.|+|+|-+=|.. |+..+ .+....|.+ .. .++.-++-+-+. -++++.+++... |+|-++-.|
T Consensus 8 ~~ed~~-~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~--~~~~~V~v~vn~-~~~~i~~ia~~~~~d~Vqlhg~e 83 (203)
T cd00405 8 TLEDAL-AAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALP--PFVKRVGVFVNE-DLEEILEIAEELGLDVVQLHGDE 83 (203)
T ss_pred CHHHHH-HHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCC--CCCcEEEEEeCC-CHHHHHHHHHhcCCCEEEECCCC
Confidence 456775 6789999999998854 55555 322222222 22 223334444342 255566676653 899997443
Q ss_pred CcCCCCchhHHHHHHHHHHHHHH-cCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccc
Q 036921 283 LGIDLPPEKVFLFQKAALYKCNM-AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETL 351 (527)
Q Consensus 283 Lg~e~~~~~v~~~qk~Ii~~c~~-~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta 351 (527)
+.+.+ +..++ .|++++- -.+ .+.. -.+...+...|+|.+++...|.
T Consensus 84 -----~~~~~--------~~l~~~~~~~~i~~i~~---------~~~~-~~~~~~~~~~~aD~il~dt~~~ 131 (203)
T cd00405 84 -----SPEYC--------AQLRARLGLPVIKAIRV---------KDEE-DLEKAAAYAGEVDAILLDSKSG 131 (203)
T ss_pred -----CHHHH--------HHHHhhcCCcEEEEEec---------CChh-hHHHhhhccccCCEEEEcCCCC
Confidence 22222 22222 3777662 111 1111 1122455667999999855443
No 217
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=61.95 E-value=41 Score=36.43 Aligned_cols=125 Identities=21% Similarity=0.260 Sum_probs=77.7
Q ss_pred CHhhHHHHHhhcccccccEEEec--CCCCHHHHHHHHHHHHHcCCCCCceEEE-eecChHhHhhHHHHHHhCCEEEEeCC
Q 036921 205 SDKDKEVISSWGVQNKIDFLSLS--YTRHAEDVRQAREYLSKLGDLSQTQIFA-KIENIEGLTHFDEILQAADGIILSRG 281 (527)
Q Consensus 205 t~~D~~di~~~~~~~g~d~I~~s--fV~s~~dv~~lr~~l~~~~~~~~~~Iia-KIEt~~av~nldeI~~~sDgImIaRg 281 (527)
-+.|+..+. .....|+|+|++- -=+|--+++.+ +++++.- .+..||+ -.=|.+=.+|| |.+-+||+=||=|
T Consensus 249 re~dK~rl~-ll~~aGvdvviLDSSqGnS~~qiemi-k~iK~~y--P~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMG 322 (503)
T KOG2550|consen 249 RDDDKERLD-LLVQAGVDVVILDSSQGNSIYQLEMI-KYIKETY--PDLQIIAGNVVTKEQAANL--IAAGADGLRVGMG 322 (503)
T ss_pred ccchhHHHH-HhhhcCCcEEEEecCCCcchhHHHHH-HHHHhhC--CCceeeccceeeHHHHHHH--HHccCceeEeccc
Confidence 345666664 5589999999984 33344444444 3455443 5566655 23343333333 4455799988765
Q ss_pred CCcCCCCchhH------HHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 282 NLGIDLPPEKV------FLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 282 DLg~e~~~~~v------~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
-=++-+.-+.+ .-+--++.+.|+..|.|||- ..+ .-+.+++.|+..|++.+|+.
T Consensus 323 sGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGi------------q~~Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 323 SGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGI------------QNVGHVVKALGLGASTVMMG 383 (503)
T ss_pred cCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCc------------CccchhHhhhhcCchhheec
Confidence 54443332211 12223678889999999997 542 35688999999999999984
No 218
>PRK06381 threonine synthase; Validated
Probab=61.74 E-value=1.6e+02 Score=30.45 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccc
Q 036921 297 KAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFN 375 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~ 375 (527)
.-+...|+..|.|+++ . |.......+...-..|++.+...++ | -++++...+.+++ +..+.
T Consensus 76 ~alA~~aa~~G~~~~ivv-----------p~~~~~~~~~~l~~~GA~V~~~~~~-----~-~~~~~~a~~~~~~-~~~~~ 137 (319)
T PRK06381 76 ASIAYFARLYGLKAVIFI-----------PRSYSNSRVKEMEKYGAEIIYVDGK-----Y-EEAVERSRKFAKE-NGIYD 137 (319)
T ss_pred HHHHHHHHHcCCcEEEEE-----------CCCCCHHHHHHHHHcCCEEEEcCCC-----H-HHHHHHHHHHHHH-cCcEe
Confidence 3566789999999887 3 2222233344555679998888642 3 5677777776654 22211
Q ss_pred hhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCcHHHHHHHhh----------CCCCCEEEEee
Q 036921 376 QDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK--ASVIICFTSSGRAARLIAKY----------RPTMPVLSVVI 440 (527)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~tA~~is~~----------RP~~PIiAv~~ 440 (527)
.. .+. ..+....+.....+.++.++++ .+.||+.+-+|.|..-++++ .|.+.|+++-+
T Consensus 138 ~~-~~~------~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~ 207 (319)
T PRK06381 138 AN-PGS------VNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVST 207 (319)
T ss_pred cC-CCC------CCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEee
Confidence 10 000 0110113334555666666664 68999999999998777764 58888998843
No 219
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=61.49 E-value=1.2e+02 Score=30.96 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCCh-HHHHHHHHHHHHHHhhccc
Q 036921 297 KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYP-VETISIVGKICAEAEKVFN 375 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP-~e~V~~~~~i~~~aE~~~~ 375 (527)
.-+...|+.+|.|+.+- .|....-.-+...-..|++.+..-+ .|. .++++...++.++-...+.
T Consensus 70 ~alA~~a~~~Gl~~~i~----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~~~~~ 134 (298)
T TIGR01139 70 IALAMVAAARGYKLILT----------MPETMSIERRKLLKAYGAELVLTPG-----AEGMKGAIAKAEEIAASTPNSYF 134 (298)
T ss_pred HHHHHHHHHcCCeEEEE----------eCCccCHHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHhCCCcEE
Confidence 34566889999998761 1222222223444557999886653 342 4566655554432111111
Q ss_pred hhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 376 QDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK--ASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
+...|. .+..+..-....+-++..+++ .+.||+.+-+|.++.-+++ ++|...|+++-+
T Consensus 135 ~~~~~~-------n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~ 198 (298)
T TIGR01139 135 MLQQFE-------NPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEP 198 (298)
T ss_pred cccccC-------CcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEec
Confidence 111111 111121112233455556654 7999999999988655544 579999999843
No 220
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=61.45 E-value=90 Score=31.80 Aligned_cols=96 Identities=17% Similarity=0.123 Sum_probs=58.0
Q ss_pred HHHHHHh-CCEEEEe-CCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHH-HHHhCC
Q 036921 266 FDEILQA-ADGIILS-RGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVLDGS 341 (527)
Q Consensus 266 ldeI~~~-sDgImIa-RgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n-av~~g~ 341 (527)
++..++. .||+++. -.--+..++.++-..+.+..++.++ -..|++. +. ..+-.|.-+.+. |...|+
T Consensus 25 i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv~---------~~s~~~~i~~a~~a~~~Ga 94 (285)
T TIGR00674 25 IDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGTG---------SNATEEAISLTKFAEDVGA 94 (285)
T ss_pred HHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeCC---------CccHHHHHHHHHHHHHcCC
Confidence 3444443 4999983 2122244455554455555555542 2468887 43 233445544444 777899
Q ss_pred cEEEeCCccccCCChHHHHHHHHHHHHHHh
Q 036921 342 DAILLGAETLRGLYPVETISIVGKICAEAE 371 (527)
Q Consensus 342 D~imLs~Eta~G~yP~e~V~~~~~i~~~aE 371 (527)
|++|+..=.....-+-+.++....|+..++
T Consensus 95 d~v~v~pP~y~~~~~~~i~~~~~~i~~~~~ 124 (285)
T TIGR00674 95 DGFLVVTPYYNKPTQEGLYQHFKAIAEEVD 124 (285)
T ss_pred CEEEEcCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 999998765544446778889999988765
No 221
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=61.33 E-value=14 Score=41.14 Aligned_cols=51 Identities=22% Similarity=0.365 Sum_probs=43.9
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHH
Q 036921 29 MTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAA 79 (527)
Q Consensus 29 ~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~ 79 (527)
+=..-|.+|+.-+..|-.+.|+++|+|+.=++.+||...+..++++.||+.
T Consensus 236 ~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~ 286 (505)
T PLN02274 236 KLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKT 286 (505)
T ss_pred CEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHh
Confidence 444556789887889999999999999999999999998888888888863
No 222
>PRK10717 cysteine synthase A; Provisional
Probab=61.32 E-value=1.2e+02 Score=31.46 Aligned_cols=127 Identities=10% Similarity=0.131 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 298 AALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
-+...|+.+|.|+.+ . |..+.-.-+...-..|++.+...+.. ...|-..++...+++++.+.....
T Consensus 78 alA~~a~~~G~~~~vv~-----------p~~~~~~k~~~~~~~GA~V~~~~~~~--~~~~~~~~~~a~~~a~~~~~~~~~ 144 (330)
T PRK10717 78 GLALVAAARGYKTVIVM-----------PETQSQEKKDLLRALGAELVLVPAAP--YANPNNYVKGAGRLAEELVASEPN 144 (330)
T ss_pred HHHHHHHHcCCcEEEEe-----------CCCCCHHHHHHHHHcCCEEEEeCCcc--cccccchHHHHHHHHHHHHhhCCC
Confidence 456688999999887 3 22222223445556799988776321 111222344444455443221100
Q ss_pred hhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 377 DLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK--ASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
..++.. ....|.....-....+.++.++++ .+.||+..-+|.++.-+++ ++|.+.|+++-+
T Consensus 145 ~~~~~~---~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep 211 (330)
T PRK10717 145 GAIWAN---QFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADP 211 (330)
T ss_pred CeEecC---CCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 001100 000011111112234666677764 7999999999998665554 579999999843
No 223
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=60.95 E-value=81 Score=32.56 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=55.1
Q ss_pred hhcccccccEEEec------CCCCHHHHHHHHH-HHHHcCCCCCceEEEeec--ChHhHhhHHHHHHh-CCEEEEeCCCC
Q 036921 214 SWGVQNKIDFLSLS------YTRHAEDVRQARE-YLSKLGDLSQTQIFAKIE--NIEGLTHFDEILQA-ADGIILSRGNL 283 (527)
Q Consensus 214 ~~~~~~g~d~I~~s------fV~s~~dv~~lr~-~l~~~~~~~~~~IiaKIE--t~~av~nldeI~~~-sDgImIaRgDL 283 (527)
+|.++.|+|+|++. +--|.++=.++-+ .....+ .++.+|+-+- +.++++......+. +|++|+.+-..
T Consensus 35 ~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~--~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP~y 112 (303)
T PRK03620 35 EWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA--GRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPPYL 112 (303)
T ss_pred HHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC--CCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCCC
Confidence 47789999999874 2334444444443 444444 6788888883 22333333332222 39999987765
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 284 GIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 284 g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
. ..+-+.+....+.|.+ +.+.|+++
T Consensus 113 ~-~~~~~~i~~~f~~va~---~~~lpi~l 137 (303)
T PRK03620 113 T-EAPQEGLAAHVEAVCK---STDLGVIV 137 (303)
T ss_pred C-CCCHHHHHHHHHHHHH---hCCCCEEE
Confidence 4 2334555555555544 56899997
No 224
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=60.78 E-value=1.5e+02 Score=30.06 Aligned_cols=117 Identities=19% Similarity=0.261 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccc
Q 036921 297 KAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFN 375 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~ 375 (527)
.-+...|+..|.++++ . |....-..+...-..|++.+...++ .-++.+...++.++- .. +
T Consensus 78 ~alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~l~~~Ga~vi~~~~~------~~~~~~~a~~la~~~-~~-~ 138 (304)
T cd01562 78 QGVAYAAKLLGIPATIVM-----------PETAPAAKVDATRAYGAEVVLYGED------FDEAEAKARELAEEE-GL-T 138 (304)
T ss_pred HHHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCCC------HHHHHHHHHHHHHhc-CC-E
Confidence 4567789999999887 3 1111222344566679998777642 346666666655442 11 1
Q ss_pred hhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC-CcEEEEECCCcHHHHHHHhh----CCCCCEEEEee
Q 036921 376 QDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK-ASVIICFTSSGRAARLIAKY----RPTMPVLSVVI 440 (527)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-a~~Ivv~T~sG~tA~~is~~----RP~~PIiAv~~ 440 (527)
|-..|. .+ .........+.++..+++ .+.||+.+-+|.|..-++++ .|...|+++-+
T Consensus 139 ~~~~~~-------n~-~~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~ 200 (304)
T cd01562 139 FIHPFD-------DP-DVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEP 200 (304)
T ss_pred EeCCCC-------Cc-chhccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 111111 11 112222344666766664 79999999999987666554 78899999854
No 225
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=60.66 E-value=99 Score=31.58 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=55.7
Q ss_pred hhcccc-cccEEEecC------CCCHHHHHHH-HHHHHHcCCCCCceEEEeec---ChHhHhhHHHHHHh-CCEEEEeCC
Q 036921 214 SWGVQN-KIDFLSLSY------TRHAEDVRQA-REYLSKLGDLSQTQIFAKIE---NIEGLTHFDEILQA-ADGIILSRG 281 (527)
Q Consensus 214 ~~~~~~-g~d~I~~sf------V~s~~dv~~l-r~~l~~~~~~~~~~IiaKIE---t~~av~nldeI~~~-sDgImIaRg 281 (527)
++.++. |+++|++.= --|.++=.++ +......+ .++.||+-+- +.++++......+. +|++|+.+-
T Consensus 28 ~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~--~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P 105 (288)
T cd00954 28 DYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAK--GKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITP 105 (288)
T ss_pred HHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC--CCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 477889 999987642 2334444444 33444444 5789999884 34555554444443 499998655
Q ss_pred CCcCCCCchhHHHHHHHHHHHHHHc-CCcEEE
Q 036921 282 NLGIDLPPEKVFLFQKAALYKCNMA-GKPAVV 312 (527)
Q Consensus 282 DLg~e~~~~~v~~~qk~Ii~~c~~~-gKpvi~ 312 (527)
... ..+-+++...-+.|. .+. +.|+++
T Consensus 106 ~y~-~~~~~~i~~~~~~v~---~a~~~lpi~i 133 (288)
T cd00954 106 FYY-KFSFEEIKDYYREII---AAAASLPMII 133 (288)
T ss_pred CCC-CCCHHHHHHHHHHHH---HhcCCCCEEE
Confidence 442 234456555555554 456 799997
No 226
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=60.37 E-value=75 Score=29.38 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEe
Q 036921 295 FQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (527)
Q Consensus 295 ~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imL 346 (527)
+..++++.|+++|+++++ |- . +..+...++..|+|+|+-
T Consensus 148 ~~~~~i~~~~~~g~~v~~wtv----------n---~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 148 LTPELVRAAHAAGLKVYVWTV----------N---DPEDARRLLALGVDGIIT 187 (189)
T ss_pred CCHHHHHHHHHcCCEEEEEcC----------C---CHHHHHHHHHCCCCEEec
Confidence 568999999999999999 73 1 244556778889999974
No 227
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=59.95 E-value=17 Score=38.12 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=43.0
Q ss_pred EEEEecCCCCCCHHHHHHHHHcC--CCeEEeecCCCCHHHHHHHHHHHHHH
Q 036921 31 KIVGTLGPKSRSVDVISGCLKAG--MSVARFDFSWGNTEYHQETLENLKAA 79 (527)
Q Consensus 31 kIi~TiGp~~~~~~~l~~l~~~G--~~v~RiN~shg~~e~~~~~i~~ir~~ 79 (527)
-..+.+|-..++.+.+..|+++| .|+.=+..|||..+...++++.+|+.
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~ 134 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTH 134 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHh
Confidence 56777888888889999999999 69999999999999888888888864
No 228
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=59.80 E-value=47 Score=32.43 Aligned_cols=115 Identities=15% Similarity=0.250 Sum_probs=69.2
Q ss_pred HHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCc
Q 036921 210 EVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPP 289 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~ 289 (527)
..+..+ .+.|+|+|.+. +++.+++.++-+.+++.| .+..|.-+-+| .++.++.++...|.|++= +++-|.
T Consensus 71 ~~i~~~-~~~g~~~i~~H-~E~~~~~~~~i~~ik~~g--~k~GialnP~T--~~~~~~~~l~~vD~VlvM----sV~PG~ 140 (201)
T PF00834_consen 71 RYIEEF-AEAGADYITFH-AEATEDPKETIKYIKEAG--IKAGIALNPET--PVEELEPYLDQVDMVLVM----SVEPGF 140 (201)
T ss_dssp GHHHHH-HHHT-SEEEEE-GGGTTTHHHHHHHHHHTT--SEEEEEE-TTS---GGGGTTTGCCSSEEEEE----SS-TTT
T ss_pred HHHHHH-HhcCCCEEEEc-ccchhCHHHHHHHHHHhC--CCEEEEEECCC--CchHHHHHhhhcCEEEEE----EecCCC
Confidence 345433 78999988887 578888999999999988 67777777777 678899999999999883 333332
Q ss_pred ------hhHHHHHHHHHHHHHHcC--CcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 290 ------EKVFLFQKAALYKCNMAG--KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 290 ------~~v~~~qk~Ii~~c~~~g--Kpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+.+..=-+++-+...++| ..+.+ ..+ .+ . .+......|+|.+++.
T Consensus 141 ~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI--------~~--~---~~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 141 GGQKFIPEVLEKIRELRKLIPENGLDFEIEVDGGI--------NE--E---NIKQLVEAGADIFVAG 194 (201)
T ss_dssp SSB--HGGHHHHHHHHHHHHHHHTCGSEEEEESSE--------ST--T---THHHHHHHT--EEEES
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCceEEEEECCC--------CH--H---HHHHHHHcCCCEEEEC
Confidence 223322333333344434 44444 432 12 1 2244555699988875
No 229
>PRK12483 threonine dehydratase; Reviewed
Probab=59.65 E-value=1.7e+02 Score=32.97 Aligned_cols=152 Identities=19% Similarity=0.243 Sum_probs=91.1
Q ss_pred ceEEEeecChHhHhh---------HHHHHH--hCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhh
Q 036921 251 TQIFAKIENIEGLTH---------FDEILQ--AADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSM 319 (527)
Q Consensus 251 ~~IiaKIEt~~av~n---------ldeI~~--~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM 319 (527)
..|+.|.|+.+-.-. +..+.+ ...||+-+ .-| ..=.-+...|+..|.|+.+-
T Consensus 52 ~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~a------SaG-----Nha~gvA~aA~~lGi~~~Iv------ 114 (521)
T PRK12483 52 NQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITA------SAG-----NHAQGVALAAARLGVKAVIV------ 114 (521)
T ss_pred CEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEE------CCC-----HHHHHHHHHHHHhCCCEEEE------
Confidence 369999998765532 222221 12465443 222 23345677899999998861
Q ss_pred hcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHH
Q 036921 320 TDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIAS 399 (527)
Q Consensus 320 ~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 399 (527)
.|..+....+...-..|++.++. |...-++++...+++++ +.. .|-..|++ + .....-..
T Consensus 115 ----mP~~tp~~Kv~~~r~~GAeVil~------g~~~d~a~~~A~~la~e-~g~-~~v~pfdd-------~-~viaGqgT 174 (521)
T PRK12483 115 ----MPRTTPQLKVDGVRAHGGEVVLH------GESFPDALAHALKLAEE-EGL-TFVPPFDD-------P-DVIAGQGT 174 (521)
T ss_pred ----ECCCCCHHHHHHHHHCCCEEEEE------CCCHHHHHHHHHHHHHh-cCC-eeeCCCCC-------h-HHHHHHHH
Confidence 24444445566666779987654 33456787777776554 221 11111110 0 11222234
Q ss_pred HHHHHHHhcC--CcEEEEECCCcHHHHHHHhh----CCCCCEEEEe
Q 036921 400 SAVRAAIKVK--ASVIICFTSSGRAARLIAKY----RPTMPVLSVV 439 (527)
Q Consensus 400 ~av~~a~~~~--a~~Ivv~T~sG~tA~~is~~----RP~~PIiAv~ 439 (527)
-+.++.++++ .+.|||..-+|.++.-++++ +|.+.||+|-
T Consensus 175 ig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVe 220 (521)
T PRK12483 175 VAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVE 220 (521)
T ss_pred HHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4677777774 79999999999987766654 8999999984
No 230
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=59.42 E-value=19 Score=35.23 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHH
Q 036921 41 RSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT 82 (527)
Q Consensus 41 ~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~ 82 (527)
.-.+.|.+|.++|++.|||.+-.-+.++..++++..|++-..
T Consensus 157 ~l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 157 CLLDELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999998654
No 231
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=59.35 E-value=33 Score=34.30 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=41.7
Q ss_pred hhcccccccEEEecCCCCH---HHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCCcCCCCc
Q 036921 214 SWGVQNKIDFLSLSYTRHA---EDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNLGIDLPP 289 (527)
Q Consensus 214 ~~~~~~g~d~I~~sfV~s~---~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~ 289 (527)
+.+.+.|+|+|.+.--.+. .+.+.++++-... ..++||+- =.....+...+.+.. +||||||||=|.-.+.+
T Consensus 155 ~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~---~~ipIIgN-GgI~s~eda~e~l~~GAd~VmvgR~~l~~~~~~ 230 (231)
T TIGR00736 155 LNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF---NDKIIIGN-NSIDDIESAKEMLKAGADFVSVARAILKGNVEF 230 (231)
T ss_pred HHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc---CCCcEEEE-CCcCCHHHHHHHHHhCCCeEEEcHhhccCCcCc
Confidence 3557899999988532221 3566665543321 23667773 111222334444444 79999999988665543
No 232
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=59.31 E-value=1.6e+02 Score=30.61 Aligned_cols=125 Identities=10% Similarity=0.074 Sum_probs=61.8
Q ss_pred CHhhHHHHHhhcccccccEEEecCC----------------CCHHHHHHHHHHHHHcCCCCCceEEEee-----cChHhH
Q 036921 205 SDKDKEVISSWGVQNKIDFLSLSYT----------------RHAEDVRQAREYLSKLGDLSQTQIFAKI-----ENIEGL 263 (527)
Q Consensus 205 t~~D~~di~~~~~~~g~d~I~~sfV----------------~s~~dv~~lr~~l~~~~~~~~~~IiaKI-----Et~~av 263 (527)
++.+.....+.+.+.|+|+|=+.+- ++++-+.++.+.+.+. -.++|.+|| ++..-.
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~---~~~pv~vKir~g~~~~~~~~ 149 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA---VDIPVTVKIRIGWDDAHINA 149 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh---cCCCEEEEEEcccCCCcchH
Confidence 3344444433556678998866432 2233333444444332 247899998 222112
Q ss_pred hhHHHHHHh--CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHH-Hh
Q 036921 264 THFDEILQA--ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAV-LD 339 (527)
Q Consensus 264 ~nldeI~~~--sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav-~~ 339 (527)
..+-..++. .|+|.+....-. -+... +.....+-+..+..++|+|. ..+ -|.. |+..++ ..
T Consensus 150 ~~~a~~l~~~G~d~i~vh~r~~~--~~~~~-~~~~~~i~~i~~~~~ipvi~nGgI---------~~~~---da~~~l~~~ 214 (319)
T TIGR00737 150 VEAARIAEDAGAQAVTLHGRTRA--QGYSG-EANWDIIARVKQAVRIPVIGNGDI---------FSPE---DAKAMLETT 214 (319)
T ss_pred HHHHHHHHHhCCCEEEEEccccc--ccCCC-chhHHHHHHHHHcCCCcEEEeCCC---------CCHH---HHHHHHHhh
Confidence 222222332 388877421111 01110 11122333334446899998 653 3333 455555 46
Q ss_pred CCcEEEeC
Q 036921 340 GSDAILLG 347 (527)
Q Consensus 340 g~D~imLs 347 (527)
|+|++|+.
T Consensus 215 gad~Vmig 222 (319)
T TIGR00737 215 GCDGVMIG 222 (319)
T ss_pred CCCEEEEC
Confidence 89999996
No 233
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=58.51 E-value=76 Score=31.46 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 293 FLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 293 ~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
..+...+++.++++|+++++ |- -+ ..+...++..|+|+|+-.
T Consensus 217 ~~~~~~~i~~~~~~G~~v~vwtv----------n~---~~~~~~~~~~Gvdgi~TD 259 (263)
T cd08567 217 TLVTKELVDEAHALGLKVVPWTV----------ND---PEDMARLIDLGVDGIITD 259 (263)
T ss_pred hhcCHHHHHHHHHCCCEEEEecC----------CC---HHHHHHHHHcCCCEEEcC
Confidence 34667899999999999999 83 11 235567788899998753
No 234
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=58.50 E-value=1.2e+02 Score=28.85 Aligned_cols=116 Identities=19% Similarity=0.165 Sum_probs=63.4
Q ss_pred CHhhHHHHHhhcccccccEEEe--cCCCC--HHHHHHHHHHHHHcCCCCCceEEE--eecChHhHhhHHHHHHh-CCEEE
Q 036921 205 SDKDKEVISSWGVQNKIDFLSL--SYTRH--AEDVRQAREYLSKLGDLSQTQIFA--KIENIEGLTHFDEILQA-ADGII 277 (527)
Q Consensus 205 t~~D~~di~~~~~~~g~d~I~~--sfV~s--~~dv~~lr~~l~~~~~~~~~~Iia--KIEt~~av~nldeI~~~-sDgIm 277 (527)
+..+...+.+. +..++++|=+ ||+.+ .+.++.+++. . .+..+++ |+.+.. -.-+++..++ +|++.
T Consensus 11 ~~~~~~~~~~~-l~~~i~~ieig~~~~~~~g~~~i~~i~~~----~--~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~ 82 (202)
T cd04726 11 DLEEALELAKK-VPDGVDIIEAGTPLIKSEGMEAVRALREA----F--PDKIIVADLKTADAG-ALEAEMAFKAGADIVT 82 (202)
T ss_pred CHHHHHHHHHH-hhhcCCEEEcCCHHHHHhCHHHHHHHHHH----C--CCCEEEEEEEecccc-HHHHHHHHhcCCCEEE
Confidence 44455555434 4444888777 56432 2334444432 1 2455665 666542 1123554443 58888
Q ss_pred EeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 278 LSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 278 IaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+-- +- .+..-+++++.|+++|++++++ + |+.....++..+...|+|.+.+.
T Consensus 83 ~h~-----~~----~~~~~~~~i~~~~~~g~~~~v~-~---------~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 83 VLG-----AA----PLSTIKKAVKAAKKYGKEVQVD-L---------IGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred EEe-----eC----CHHHHHHHHHHHHHcCCeEEEE-E---------eCCCCHHHHHHHHHCCCCEEEEc
Confidence 731 11 1234577899999999998851 0 11122233345777799998883
No 235
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.40 E-value=2.3e+02 Score=29.22 Aligned_cols=131 Identities=12% Similarity=0.127 Sum_probs=69.6
Q ss_pred CCCHhhHHHHHh-------hcccccccEEEecCC-------------CCHHH------------HHHHHHHHHH-cCCCC
Q 036921 203 TLSDKDKEVISS-------WGVQNKIDFLSLSYT-------------RHAED------------VRQAREYLSK-LGDLS 249 (527)
Q Consensus 203 ~lt~~D~~di~~-------~~~~~g~d~I~~sfV-------------~s~~d------------v~~lr~~l~~-~~~~~ 249 (527)
.+|..|++.+.+ .+.+.|+|+|=+-.- +...| +.++.+.+++ .| .
T Consensus 130 ~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g--~ 207 (327)
T cd02803 130 EMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVG--P 207 (327)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcC--C
Confidence 588888776642 456789999876543 22222 2222222322 24 5
Q ss_pred CceEEEeecCh----------HhHhhHHHHHHh-CCEEEEeCCCCcCCCCc----hhHHHHHHHHHHHH-HHcCCcEEE-
Q 036921 250 QTQIFAKIENI----------EGLTHFDEILQA-ADGIILSRGNLGIDLPP----EKVFLFQKAALYKC-NMAGKPAVV- 312 (527)
Q Consensus 250 ~~~IiaKIEt~----------~av~nldeI~~~-sDgImIaRgDLg~e~~~----~~v~~~qk~Ii~~c-~~~gKpvi~- 312 (527)
+..|..||--. ++++-+..+.+. .|.|-+..|+..-.... ..-.......++.. +..+.|++.
T Consensus 208 d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~ 287 (327)
T cd02803 208 DFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVIAV 287 (327)
T ss_pred CceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEEEe
Confidence 67899888632 222223333333 48998877765322110 00011222233333 334899988
Q ss_pred ecchhhhhcCCCCChHhhhhHHHHHHh-CCcEEEeC
Q 036921 313 TRVVDSMTDNLRPTRAEATDVANAVLD-GSDAILLG 347 (527)
Q Consensus 313 Tq~LeSM~~~p~PtraEv~Dv~nav~~-g~D~imLs 347 (527)
..+- |. .++..++.. |+|.|++.
T Consensus 288 Ggi~---------t~---~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 288 GGIR---------DP---EVAEEILAEGKADLVALG 311 (327)
T ss_pred CCCC---------CH---HHHHHHHHCCCCCeeeec
Confidence 6532 33 344566776 79999986
No 236
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=58.37 E-value=65 Score=28.72 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 234 DVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 234 dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
-++.+++.|.+.+ ....+.+.-+.. .-++++++++-.|.|+.+-.+ ......+-+.|+++++|+|.
T Consensus 57 Ka~~~~~~l~~~n--p~~~v~~~~~~~-~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~ 122 (135)
T PF00899_consen 57 KAEAAKERLQEIN--PDVEVEAIPEKI-DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFID 122 (135)
T ss_dssp HHHHHHHHHHHHS--TTSEEEEEESHC-SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHhc--Cceeeeeeeccc-ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEE
Confidence 4566777777776 667766644433 457888999888988887444 34667788899999999987
No 237
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=57.89 E-value=2.4e+02 Score=29.37 Aligned_cols=45 Identities=13% Similarity=0.146 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhc-----CCcEEEEECCCcHHHHHHHhh----CCCCCEEEEee
Q 036921 396 SIASSAVRAAIKV-----KASVIICFTSSGRAARLIAKY----RPTMPVLSVVI 440 (527)
Q Consensus 396 ~ia~~av~~a~~~-----~a~~Ivv~T~sG~tA~~is~~----RP~~PIiAv~~ 440 (527)
.....+.++.+++ ..+.||+.+-||.|+.-++++ .|.+.|+++-+
T Consensus 166 g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~ 219 (329)
T PRK14045 166 GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAV 219 (329)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 3344444666654 478999999999998776664 59999999854
No 238
>PLN02970 serine racemase
Probab=57.84 E-value=1.6e+02 Score=30.62 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 298 AALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
-+...|+..|.|+.+ . |..+.-..+.+.-..|++.+...+ ...++.+...++.++ ... .|
T Consensus 89 alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~~~~~GA~Vi~~~~------~~~~~~~~a~~la~~-~g~-~~ 149 (328)
T PLN02970 89 ALALAAKLRGIPAYIVV-----------PKNAPACKVDAVIRYGGIITWCEP------TVESREAVAARVQQE-TGA-VL 149 (328)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHhcCCEEEEeCC------CHHHHHHHHHHHHHh-cCC-EE
Confidence 556689999999887 3 222222233455556999877643 234556666665443 111 12
Q ss_pred hhhhhhhhcccCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCcHHHHHHHhh----CCCCCEEEEee
Q 036921 377 DLYFKKTVKCVGEPMTHLESIASSAVRAAIKV-KASVIICFTSSGRAARLIAKY----RPTMPVLSVVI 440 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~tA~~is~~----RP~~PIiAv~~ 440 (527)
-..|.+ + ...+....-+.++.+++ ..+.+|+..-+|.+..-++++ .|...|+++-+
T Consensus 150 ~~~~~n-------~-~~~~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep 210 (328)
T PLN02970 150 IHPYND-------G-RVISGQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEP 210 (328)
T ss_pred eCCCCC-------c-chhhehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEE
Confidence 111210 1 11222233455666665 478999999999998777765 89999999844
No 239
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=57.44 E-value=1.4e+02 Score=30.51 Aligned_cols=100 Identities=18% Similarity=0.134 Sum_probs=59.4
Q ss_pred HhHhh-HHHHHH--hCCEEEEeCCCC--cCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhH-
Q 036921 261 EGLTH-FDEILQ--AADGIILSRGNL--GIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDV- 333 (527)
Q Consensus 261 ~av~n-ldeI~~--~sDgImIaRgDL--g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv- 333 (527)
+++++ ++..++ -.|||+++ |-- +..+..++-..+.+.+++.++ -.+|++. +. .++-.|.-..
T Consensus 24 ~~~~~li~~l~~~~Gv~gi~v~-GstGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagvg---------~~~t~~ai~~a 92 (293)
T PRK04147 24 QGLRRLVRFNIEKQGIDGLYVG-GSTGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQVG---------SVNTAEAQELA 92 (293)
T ss_pred HHHHHHHHHHHhcCCCCEEEEC-CCccccccCCHHHHHHHHHHHHHHhC-CCCCEEecCC---------CCCHHHHHHHH
Confidence 34443 344444 25899985 221 234455555555566666554 2468887 53 3444555444
Q ss_pred HHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHh
Q 036921 334 ANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAE 371 (527)
Q Consensus 334 ~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE 371 (527)
-.|...|+|++|+..---...-+-+.++....++..+.
T Consensus 93 ~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~ 130 (293)
T PRK04147 93 KYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSAD 130 (293)
T ss_pred HHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 44678899999998544333334677888888887654
No 240
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=57.11 E-value=1.8e+02 Score=29.79 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCC-hHHHHHHHHHHHHHHhhccch
Q 036921 298 AALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLY-PVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~y-P~e~V~~~~~i~~~aE~~~~~ 376 (527)
-+...|+.+|.|+.+- .|..+....+...-..|++.+..-++ | -.++++...++.++- ..+.+
T Consensus 72 alA~~a~~~G~~~~i~----------vp~~~~~~k~~~~~~~GA~v~~~~~~-----~~~~~~~~~a~~~~~~~-~~~~~ 135 (299)
T TIGR01136 72 ALAMVAAAKGYKLILT----------MPETMSLERRKLLRAYGAELILTPAE-----EGMKGAIDKAEELAAET-NKYVM 135 (299)
T ss_pred HHHHHHHHcCCcEEEE----------ECCCCCHHHHHHHHHcCCEEEEeCCC-----CChHHHHHHHHHHHhhC-CCeEe
Confidence 4566899999998761 24444444555566679998776532 2 245555555544321 11111
Q ss_pred hhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCcHHHHHH----HhhCCCCCEEEEee
Q 036921 377 DLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK--ASVIICFTSSGRAARLI----AKYRPTMPVLSVVI 440 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~tA~~i----s~~RP~~PIiAv~~ 440 (527)
...|. .+..+..-....+.++.++++ .+.||+.+-+|.++.-+ ..++|...|+++-+
T Consensus 136 ~~~~~-------~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~ 198 (299)
T TIGR01136 136 LDQFE-------NPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEP 198 (299)
T ss_pred cCCCC-------CchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEec
Confidence 11111 011111123344567777764 89999999999887554 44579999999854
No 241
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=57.07 E-value=1.6e+02 Score=31.62 Aligned_cols=135 Identities=21% Similarity=0.143 Sum_probs=82.6
Q ss_pred cccccCCccccCCCCCHhhHHHHHhhcccccccEEEe---cCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhH
Q 036921 190 FTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSL---SYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHF 266 (527)
Q Consensus 190 kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~---sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nl 266 (527)
.|=.+|+.++ |+ +...+ ..+..|.|.+.- +...+++|+.++.+.|++.. .+.+|+.|+=.....+.+
T Consensus 161 ~gg~l~~~Kv-----~~-eiA~~--r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~--~~~pV~vK~~~~~~~~~~ 230 (392)
T cd02808 161 EGGHLPGEKV-----TE-EIAKI--RGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREAT--GGKPIGVKLVAGHGEGDI 230 (392)
T ss_pred CCCccccccC-----CH-HHHHH--hCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhC--CCceEEEEECCCCCHHHH
Confidence 4445555543 33 23333 356778887653 35788888888888888775 447899998543233444
Q ss_pred HHHHHh--CCEEEEeCCCCcC---------CCCchhHHHHHHHHHHHHHHc----CCcEEE-ecchhhhhcCCCCChHhh
Q 036921 267 DEILQA--ADGIILSRGNLGI---------DLPPEKVFLFQKAALYKCNMA----GKPAVV-TRVVDSMTDNLRPTRAEA 330 (527)
Q Consensus 267 deI~~~--sDgImIaRgDLg~---------e~~~~~v~~~qk~Ii~~c~~~----gKpvi~-Tq~LeSM~~~p~PtraEv 330 (527)
...++. +|+|.|.=++=|. +.+++ .......+.+.+++. ..|+|. ..+ .--
T Consensus 231 a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~p-t~~~L~~v~~~~~~~~~~~~i~viasGGI------------~~g 297 (392)
T cd02808 231 AAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLP-TELGLARAHQALVKNGLRDRVSLIASGGL------------RTG 297 (392)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCCCcccccccCCcc-HHHHHHHHHHHHHHcCCCCCCeEEEECCC------------CCH
Confidence 455543 5999996544222 12222 123344455555544 467777 553 234
Q ss_pred hhHHHHHHhCCcEEEeC
Q 036921 331 TDVANAVLDGSDAILLG 347 (527)
Q Consensus 331 ~Dv~nav~~g~D~imLs 347 (527)
.|++.++..|||++.+.
T Consensus 298 ~Dv~kalaLGAd~V~ig 314 (392)
T cd02808 298 ADVAKALALGADAVGIG 314 (392)
T ss_pred HHHHHHHHcCCCeeeec
Confidence 69999999999999886
No 242
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=56.75 E-value=2.5e+02 Score=30.50 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=74.0
Q ss_pred CCccccCCCCCHhhHHHHHhhcccccccEEEecCCC-CHHHHHHHHHHHHHcCCCCCceEEEeecChH-hHhhHHHHHHh
Q 036921 195 SQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTR-HAEDVRQAREYLSKLGDLSQTQIFAKIENIE-GLTHFDEILQA 272 (527)
Q Consensus 195 p~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~-s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~-av~nldeI~~~ 272 (527)
|...+.+..++..+...+.+.+++.|+++|=..+-. +.+..+.++++....+ ...|+.-+.... +-..++...+.
T Consensus 4 ~~l~~alD~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~~~~~~~i~~l~~~~~---~~~ii~D~kl~d~g~~~v~~a~~a 80 (430)
T PRK07028 4 PILQVALDLLELDRAVEIAKEAVAGGADWIEAGTPLIKSEGMNAIRTLRKNFP---DHTIVADMKTMDTGAIEVEMAAKA 80 (430)
T ss_pred ceEEEEeccCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhhHHHHHHHHHHCC---CCEEEEEeeeccchHHHHHHHHHc
Confidence 444555555666666666556688999999663211 2445566666554432 334553322111 22355555554
Q ss_pred -CCEEEE-eCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 273 -ADGIIL-SRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 273 -sDgImI-aRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+|+|.+ +-.| . ..-+.+++.|+++|.++++ .- + .+|. +..+..+...|+|.+.+.
T Consensus 81 GAdgV~v~g~~~--------~--~~~~~~i~~a~~~G~~~~~g~~-------s-~~t~--~e~~~~a~~~GaD~I~~~ 138 (430)
T PRK07028 81 GADIVCILGLAD--------D--STIEDAVRAARKYGVRLMADLI-------N-VPDP--VKRAVELEELGVDYINVH 138 (430)
T ss_pred CCCEEEEecCCC--------h--HHHHHHHHHHHHcCCEEEEEec-------C-CCCH--HHHHHHHHhcCCCEEEEE
Confidence 499886 3221 0 0136789999999999885 31 1 1232 233466677899999765
No 243
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=56.59 E-value=2.6e+02 Score=29.42 Aligned_cols=157 Identities=11% Similarity=0.085 Sum_probs=90.8
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEe---------cCCC---CHHHHHHHHHHHHHcCCCCCceEEEe
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSL---------SYTR---HAEDVRQAREYLSKLGDLSQTQIFAK 256 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~---------sfV~---s~~dv~~lr~~l~~~~~~~~~~IiaK 256 (527)
|-|-..++.. +|..++..|.....+.|+|.|=+ ||.. ...+.+.++.+.... ++.++.+.
T Consensus 11 RDG~q~~~~~-----f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~---~~~~~~~l 82 (333)
T TIGR03217 11 RDGMHAIRHQ-----FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVV---KRAKVAVL 82 (333)
T ss_pred CCCCcCCCCc-----CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhC---CCCEEEEE
Confidence 3444444443 46677777765656689999866 3331 112344444444332 33444444
Q ss_pred ec----ChHhHhhHHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhh
Q 036921 257 IE----NIEGLTHFDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEAT 331 (527)
Q Consensus 257 IE----t~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~ 331 (527)
+- +.+. ++.-.+. .|.|-|+ . ...+.. .-++.++.+++.|..+.++-| .+. .-+..++.
T Consensus 83 l~pg~~~~~d---l~~a~~~gvd~iri~-----~--~~~e~d-~~~~~i~~ak~~G~~v~~~l~-~s~----~~~~e~l~ 146 (333)
T TIGR03217 83 LLPGIGTVHD---LKAAYDAGARTVRVA-----T--HCTEAD-VSEQHIGMARELGMDTVGFLM-MSH----MTPPEKLA 146 (333)
T ss_pred eccCccCHHH---HHHHHHCCCCEEEEE-----e--ccchHH-HHHHHHHHHHHcCCeEEEEEE-ccc----CCCHHHHH
Confidence 32 3222 2222222 3666664 1 222322 357889999999988765222 221 23456777
Q ss_pred hHHHH-HHhCCcEEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 332 DVANA-VLDGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 332 Dv~na-v~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
+.+.. ...|+|+|.+. +|+=.-+|.+.-+....+.++.
T Consensus 147 ~~a~~~~~~Ga~~i~i~-DT~G~~~P~~v~~~v~~l~~~l 185 (333)
T TIGR03217 147 EQAKLMESYGADCVYIV-DSAGAMLPDDVRDRVRALKAVL 185 (333)
T ss_pred HHHHHHHhcCCCEEEEc-cCCCCCCHHHHHHHHHHHHHhC
Confidence 77765 44599999997 8887888999888877776544
No 244
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=56.51 E-value=2.3e+02 Score=28.78 Aligned_cols=154 Identities=16% Similarity=0.069 Sum_probs=89.4
Q ss_pred CCHhhHHHHHhhcccccccEEEecCC---------CCHHHHHHHHHHHHHcCCCCCceEEEeecChHh--------Hh-h
Q 036921 204 LSDKDKEVISSWGVQNKIDFLSLSYT---------RHAEDVRQAREYLSKLGDLSQTQIFAKIENIEG--------LT-H 265 (527)
Q Consensus 204 lt~~D~~di~~~~~~~g~d~I~~sfV---------~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~a--------v~-n 265 (527)
++..++..+.....+.|+|.|=+-+= -+.++.+.++.+.+... +..+..++.-.+.-+ .+ .
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~-~~~l~~~~r~~~~~~~~~~p~~~~~~d 96 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMP-NTPLQMLLRGQNLVGYRHYPDDVVELF 96 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCC-CCceehhcccccccCccCCCcHHHHHH
Confidence 56666666655556789998855431 24555555554433221 022333332221111 11 1
Q ss_pred HHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHH-HHhCCcE
Q 036921 266 FDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANA-VLDGSDA 343 (527)
Q Consensus 266 ldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~na-v~~g~D~ 343 (527)
++...+. .|.|-|. .+..++ ..-+..++.++++|+-+...- +|...++.+.+.+.+++.. ...|+|.
T Consensus 97 i~~~~~~g~~~iri~-------~~~~~~-~~~~~~i~~ak~~G~~v~~~i---~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 165 (275)
T cd07937 97 VEKAAKNGIDIFRIF-------DALNDV-RNLEVAIKAVKKAGKHVEGAI---CYTGSPVHTLEYYVKLAKELEDMGADS 165 (275)
T ss_pred HHHHHHcCCCEEEEe-------ecCChH-HHHHHHHHHHHHCCCeEEEEE---EecCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 2222322 2665552 233333 334567888899997665411 3444567777888777664 5569999
Q ss_pred EEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 344 ILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 344 imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
|.|. +|.=.-.|.+.-++++.+.++.
T Consensus 166 i~l~-DT~G~~~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 166 ICIK-DMAGLLTPYAAYELVKALKKEV 191 (275)
T ss_pred EEEc-CCCCCCCHHHHHHHHHHHHHhC
Confidence 9998 7777778999988888887654
No 245
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=56.31 E-value=58 Score=31.51 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=61.7
Q ss_pred CCChHhhhhHHHHHHhCCcEEEeCCccc---cCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHH
Q 036921 324 RPTRAEATDVANAVLDGSDAILLGAETL---RGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASS 400 (527)
Q Consensus 324 ~PtraEv~Dv~nav~~g~D~imLs~Eta---~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ 400 (527)
.++..-+.++..|+.+|||.+-..--.. .|.| -+..+.+..+++++.. ...+..+. ....+ +.....
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~-~~~~~ei~~v~~~~~g-~~lkvI~e------~~~l~--~~~i~~ 135 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDY-EAVYEEIAAVVEACGG-APLKVILE------TGLLT--DEEIIK 135 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCH-HHHHHHHHHHHHhcCC-CeEEEEEe------cCCCC--HHHHHH
Confidence 5566677889999999999998754433 2333 5577777777776541 11111111 11112 345566
Q ss_pred HHHHHHhcCCcEEEEECCCcHH--------HHHHHhh-CCCCCEEEE
Q 036921 401 AVRAAIKVKASVIICFTSSGRA--------ARLIAKY-RPTMPVLSV 438 (527)
Q Consensus 401 av~~a~~~~a~~Ivv~T~sG~t--------A~~is~~-RP~~PIiAv 438 (527)
++++|.+++|+ ++=|.||.+ +..+++. +.++||.+-
T Consensus 136 a~ria~e~GaD--~IKTsTG~~~~~at~~~v~~~~~~~~~~v~ik~a 180 (203)
T cd00959 136 ACEIAIEAGAD--FIKTSTGFGPGGATVEDVKLMKEAVGGRVGVKAA 180 (203)
T ss_pred HHHHHHHhCCC--EEEcCCCCCCCCCCHHHHHHHHHHhCCCceEEEe
Confidence 78899999999 455667754 3444443 345666643
No 246
>PRK10812 putative DNAse; Provisional
Probab=56.27 E-value=1.3e+02 Score=30.63 Aligned_cols=102 Identities=14% Similarity=0.158 Sum_probs=60.0
Q ss_pred hhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCC-----CCCceEEEeecChHhHhhHHHHHHhCCEEEEeCC
Q 036921 207 KDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGD-----LSQTQIFAKIENIEGLTHFDEILQAADGIILSRG 281 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~-----~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRg 281 (527)
.|.+.+.+.+.+.|+..++.+- .+.++...+.++...... .-|+.- +.....++.+.+++.....+ |=|
T Consensus 20 ~d~~~vl~~a~~~gv~~~~~~~-~~~~~~~~~~~l~~~~~~v~~~~GiHP~~---~~~~~~~~~l~~~~~~~~vv--aIG 93 (265)
T PRK10812 20 KDVDDVLAKAAARDVKFCLAVA-TTLPGYRHMRDLVGERDNVVFSCGVHPLN---QDEPYDVEELRRLAAEEGVV--AMG 93 (265)
T ss_pred cCHHHHHHHHHHcCCCEEEEeC-CCHHHHHHHHHHHhhCCCeEEEEEeCCCC---CCChhHHHHHHHHhcCCCEE--EEE
Confidence 3555554567889999887774 467787777776654310 011111 11234466666666443333 446
Q ss_pred CCcCCCCch-hHHHHH----HHHHHHHHHcCCcEEE-ec
Q 036921 282 NLGIDLPPE-KVFLFQ----KAALYKCNMAGKPAVV-TR 314 (527)
Q Consensus 282 DLg~e~~~~-~v~~~q----k~Ii~~c~~~gKpvi~-Tq 314 (527)
..|++.... .-...| +..++.|++.|+|+++ +.
T Consensus 94 EiGLD~~~~~~~~~~Q~~vf~~ql~lA~e~~~Pv~iH~r 132 (265)
T PRK10812 94 ETGLDYYYTPETKVRQQESFRHHIQIGRELNKPVIVHTR 132 (265)
T ss_pred eeecCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence 777776421 123344 4667788999999998 63
No 247
>PLN02565 cysteine synthase
Probab=56.25 E-value=1.5e+02 Score=30.94 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=71.1
Q ss_pred HHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchh
Q 036921 298 AALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQD 377 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~ 377 (527)
-+...|+.+|.|+.+. .|..+....+...-..|++.++...+ . ...++++...++.++ +....+-
T Consensus 81 alA~~a~~~G~~~~iv----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~--~~~~~~~~a~~l~~~-~~~~~~~ 145 (322)
T PLN02565 81 GLAFMAAAKGYKLIIT----------MPASMSLERRIILLAFGAELVLTDPA--K--GMKGAVQKAEEILAK-TPNSYIL 145 (322)
T ss_pred HHHHHHHHcCCeEEEE----------eCCCCcHHHHHHHHHcCCEEEEeCCC--C--CcHHHHHHHHHHHHh-CCCcEee
Confidence 3455899999998862 35555555566666679998875432 1 224566666665543 2111111
Q ss_pred hhhhhhhcccCCCCChHHHHHHHHHHHHHhc--CCcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 378 LYFKKTVKCVGEPMTHLESIASSAVRAAIKV--KASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~--~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
..|.+ +..+.--...-+.++..++ +.+++|+..-+|.+..-+++ ++|.+.|+++-+
T Consensus 146 ~q~~n-------~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep 207 (322)
T PLN02565 146 QQFEN-------PANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEP 207 (322)
T ss_pred cccCC-------HhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence 11211 1111111233455666666 48999999999988655554 579999999843
No 248
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=56.18 E-value=35 Score=31.59 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=39.7
Q ss_pred HhHhhHHHHHH--hCC--EEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-e
Q 036921 261 EGLTHFDEILQ--AAD--GIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-T 313 (527)
Q Consensus 261 ~av~nldeI~~--~sD--gImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-T 313 (527)
+.++++++.+. -.| .+++|-.|++...+.+++....+.+++.+++.|.++++ +
T Consensus 46 ~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 46 QMLVRFYEDVIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 34445554332 236 45668889988888999999999999999999999887 5
No 249
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=56.08 E-value=1.7e+02 Score=31.64 Aligned_cols=124 Identities=10% Similarity=0.122 Sum_probs=69.5
Q ss_pred HHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccc
Q 036921 297 KAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFN 375 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~ 375 (527)
.-+...|+.+|.++.+ . |..+.-..+...-..|++.+...+.. .-..+-..++...++.++.+.. +
T Consensus 75 ~alA~~a~~~G~~~~iv~-----------p~~~~~~k~~~~~~~GA~v~~~~~~~-~~~~~~~~~~~a~~l~~~~~~~-~ 141 (454)
T TIGR01137 75 IGLALVAAIKGYKCIIVL-----------PEKMSNEKVDVLKALGAEIVRTPTAA-AFDSPESHIGVAKRLVREIPGA-H 141 (454)
T ss_pred HHHHHHHHHcCCeEEEEe-----------CCCcCHHHHHHHHHCCCEEEEcCCcc-CCCchHHHHHHHHHHHHhCCCc-E
Confidence 3456789999999887 3 32332334445556799987765321 1112222344445544432221 1
Q ss_pred hhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 376 QDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK--ASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
+...|.+ +.++..-....+.++.++++ .++||+..-+|.|+.-+++ .+|.+.|+++-+
T Consensus 142 ~~~~~~~-------~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~ 205 (454)
T TIGR01137 142 ILDQYNN-------PSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADP 205 (454)
T ss_pred ecccCCC-------hhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEec
Confidence 1111111 11121112334566666663 7999999999999766555 579999999854
No 250
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=56.04 E-value=29 Score=37.54 Aligned_cols=46 Identities=24% Similarity=0.422 Sum_probs=42.7
Q ss_pred EecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHH
Q 036921 34 GTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAA 79 (527)
Q Consensus 34 ~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~ 79 (527)
|.||-..++.+.++-|.++|+|+.=|+-|.|+..+..++|+.+|+.
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhh
Confidence 5678888899999999999999999999999999999999999975
No 251
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=56.01 E-value=2.5e+02 Score=29.02 Aligned_cols=111 Identities=15% Similarity=0.280 Sum_probs=67.4
Q ss_pred CceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE--ecchh---hhhc--
Q 036921 250 QTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV--TRVVD---SMTD-- 321 (527)
Q Consensus 250 ~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~--Tq~Le---SM~~-- 321 (527)
++++...+....-++.+.+-++. .+.||+. |-.+|+++=...-+++++.|+++|.+|=. .++-. ....
T Consensus 74 ~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~ 149 (283)
T PRK07998 74 DVPVSLHLDHGKTFEDVKQAVRAGFTSVMID----GAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEA 149 (283)
T ss_pred CCCEEEECcCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccc
Confidence 45666666665444444333333 2799995 24678877777889999999999999822 33211 0000
Q ss_pred CCCCChHhhhhHHHHH-HhCCcEEEeCCccccCCCh--HHHHHHHHHHH
Q 036921 322 NLRPTRAEATDVANAV-LDGSDAILLGAETLRGLYP--VETISIVGKIC 367 (527)
Q Consensus 322 ~p~PtraEv~Dv~nav-~~g~D~imLs~Eta~G~yP--~e~V~~~~~i~ 367 (527)
...-+..|+ ..++ .-|+|++-.+--|+-|.|+ ---...+.+|.
T Consensus 150 ~~~T~pe~a---~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~ 195 (283)
T PRK07998 150 DCKTEPEKV---KDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIA 195 (283)
T ss_pred cccCCHHHH---HHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHH
Confidence 111222333 4444 3599999999999999994 33334444443
No 252
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=55.47 E-value=2.2e+02 Score=29.47 Aligned_cols=127 Identities=11% Similarity=0.079 Sum_probs=84.2
Q ss_pred cccccccEEEe-----c---------CCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeC
Q 036921 216 GVQNKIDFLSL-----S---------YTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSR 280 (527)
Q Consensus 216 ~~~~g~d~I~~-----s---------fV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaR 280 (527)
+-+.|+-.|++ + -.++++||+++++.. +++||+++=.-- +...+++.++ +|.|
T Consensus 24 ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V-------~iPVIGi~K~~~-~~Ea~~L~eaGvDiI---- 91 (283)
T cd04727 24 AEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV-------SIPVMAKVRIGH-FVEAQILEALGVDMI---- 91 (283)
T ss_pred HHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC-------CCCeEEeeehhH-HHHHHHHHHcCCCEE----
Confidence 35677776666 2 345777777777643 578888774322 6666777765 3766
Q ss_pred CCCcCCCCchhHHHHHHHHHHHHHH-cCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHH
Q 036921 281 GNLGIDLPPEKVFLFQKAALYKCNM-AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVE 358 (527)
Q Consensus 281 gDLg~e~~~~~v~~~qk~Ii~~c~~-~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e 358 (527)
| ..+-+-+ -..++...+. ++.|++- . +.+.+.-+++..|+|.|=-+.|--.| +-.|
T Consensus 92 -D-aT~r~rP-----~~~~~~~iK~~~~~l~MAD~--------------stleEal~a~~~Gad~I~TTl~gyT~-~~~~ 149 (283)
T cd04727 92 -D-ESEVLTP-----ADEEHHIDKHKFKVPFVCGA--------------RNLGEALRRISEGAAMIRTKGEAGTG-NVVE 149 (283)
T ss_pred -e-ccCCCCc-----HHHHHHHHHHHcCCcEEccC--------------CCHHHHHHHHHCCCCEEEecCCCCCC-cHHH
Confidence 4 2222111 1444444444 4888774 3 23456678899999999988886666 6789
Q ss_pred HHHHHHHHHHHHhhccch
Q 036921 359 TISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 359 ~V~~~~~i~~~aE~~~~~ 376 (527)
+|+-+++|-.++.....|
T Consensus 150 ~~~~~~~i~~~i~~~~gy 167 (283)
T cd04727 150 AVRHMRAVNGEIRKLQSM 167 (283)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999999988866554
No 253
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=54.87 E-value=1.6e+02 Score=30.75 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=63.6
Q ss_pred cccEEEecC----C------CCHHHHHHHHHHHHHc----CCCCCceEEEeecChHhHhhHHHHHHh-----CCEEEE-e
Q 036921 220 KIDFLSLSY----T------RHAEDVRQAREYLSKL----GDLSQTQIFAKIENIEGLTHFDEILQA-----ADGIIL-S 279 (527)
Q Consensus 220 g~d~I~~sf----V------~s~~dv~~lr~~l~~~----~~~~~~~IiaKIEt~~av~nldeI~~~-----sDgImI-a 279 (527)
++|+|-+.| + ++++.+.++.+.+.+. + .++.|++|+---...+++.++++. +|||.+ +
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~--~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLG--KKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcc--cCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEC
Confidence 488887765 1 2345555554444432 2 358899999422222344444443 388875 3
Q ss_pred CC---------CCcCC---C-CchhHHHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcE
Q 036921 280 RG---------NLGID---L-PPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDA 343 (527)
Q Consensus 280 Rg---------DLg~e---~-~~~~v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~ 343 (527)
|- .+... + |....+...+.+-...+.. +.|+|. ..+- ...|+..++..|||+
T Consensus 238 ~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~------------t~~da~e~l~aGAd~ 305 (327)
T cd04738 238 TTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGIS------------SGEDAYEKIRAGASL 305 (327)
T ss_pred CcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCC------------CHHHHHHHHHcCCCH
Confidence 20 01100 1 1222334445554444555 579887 5532 335677788889999
Q ss_pred EEeCCc
Q 036921 344 ILLGAE 349 (527)
Q Consensus 344 imLs~E 349 (527)
||+...
T Consensus 306 V~vg~~ 311 (327)
T cd04738 306 VQLYTG 311 (327)
T ss_pred HhccHH
Confidence 999743
No 254
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=54.85 E-value=1.3e+02 Score=29.87 Aligned_cols=129 Identities=12% Similarity=0.112 Sum_probs=73.5
Q ss_pred hHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHh-----------HhhHHHHHHhCCEE
Q 036921 208 DKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEG-----------LTHFDEILQAADGI 276 (527)
Q Consensus 208 D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~a-----------v~nldeI~~~sDgI 276 (527)
+.++++ ..++.|++.|++.- ....+ ..+++++...+ .+ .++.-|....+ .+-++.+-+.++.+
T Consensus 89 ~~edv~-~~l~~Ga~~viigt-~~~~~-~~~~~~~~~~~--~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 162 (233)
T cd04723 89 SLENAQ-EWLKRGASRVIVGT-ETLPS-DDDEDRLAALG--EQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEEL 162 (233)
T ss_pred CHHHHH-HHHHcCCCeEEEcc-eeccc-hHHHHHHHhcC--CC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeE
Confidence 367775 45899999988864 44555 66666666554 32 45565655443 12233333345777
Q ss_pred EEeCCCCcCCCCc--hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccC
Q 036921 277 ILSRGNLGIDLPP--EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRG 353 (527)
Q Consensus 277 mIaRgDLg~e~~~--~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G 353 (527)
++. |+..+-.. .++ ..-++ .++....|++. ..+ =+. .|+..+...|+|++++..-=-.|
T Consensus 163 i~~--di~~~G~~~g~~~-~~~~~---i~~~~~ipvi~~GGi---------~s~---edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 163 IVL--DIDRVGSGQGPDL-ELLER---LAARADIPVIAAGGV---------RSV---EDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred EEE--EcCccccCCCcCH-HHHHH---HHHhcCCCEEEeCCC---------CCH---HHHHHHHHcCCCEEEEehHHHcC
Confidence 773 33322211 111 11222 34456899999 663 233 45555566699999998666667
Q ss_pred CChHHHH
Q 036921 354 LYPVETI 360 (527)
Q Consensus 354 ~yP~e~V 360 (527)
+++.+.+
T Consensus 225 ~~~~~~~ 231 (233)
T cd04723 225 GLTLEDV 231 (233)
T ss_pred CCCHHHH
Confidence 6665543
No 255
>PRK08638 threonine dehydratase; Validated
Probab=54.70 E-value=1.9e+02 Score=30.40 Aligned_cols=116 Identities=20% Similarity=0.238 Sum_probs=69.7
Q ss_pred HHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccc
Q 036921 297 KAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFN 375 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~ 375 (527)
.-+...|+..|.|+++ . |..+.-..+...-..|++.++.. ....++++.+.+++++- .. .
T Consensus 88 ~alA~~aa~~G~~~~iv~-----------p~~~~~~k~~~~~~~GA~V~~~~------~~~~~~~~~a~~~a~~~-g~-~ 148 (333)
T PRK08638 88 QGVALSCALLGIDGKVVM-----------PKGAPKSKVAATCGYGAEVVLHG------DNFNDTIAKVEEIVEEE-GR-T 148 (333)
T ss_pred HHHHHHHHHcCCCEEEEe-----------CCCCcHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhc-CC-E
Confidence 4566789999999887 3 32222233444455699988653 23467777777776552 22 2
Q ss_pred hhhhhhhhhcccCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCcHHHHHHHhh----CCCCCEEEEe
Q 036921 376 QDLYFKKTVKCVGEPMTHLESIASSAVRAAIKV-KASVIICFTSSGRAARLIAKY----RPTMPVLSVV 439 (527)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~tA~~is~~----RP~~PIiAv~ 439 (527)
|-..|.+ |. ..+.-...+-++.+++ +.+.||+..-+|.+..-++++ .|.+.|+++-
T Consensus 149 ~~~~~~~-------~~-~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVe 209 (333)
T PRK08638 149 FIPPYDD-------PK-VIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQ 209 (333)
T ss_pred EcCcCCC-------cc-hhccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 2111210 11 1111222344444444 479999999999998777775 8999999983
No 256
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=54.59 E-value=72 Score=34.19 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh----CCEEEEeCCCCcCCC-----CchhHHHHHHHHH
Q 036921 230 RHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA----ADGIILSRGNLGIDL-----PPEKVFLFQKAAL 300 (527)
Q Consensus 230 ~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~----sDgImIaRgDLg~e~-----~~~~v~~~qk~Ii 300 (527)
-+-++++++++.. +.+|+.| |+.+.++...+ .|+|+|+--- |-.+ +++-++.++
T Consensus 215 ~~w~~i~~l~~~~-------~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~HG-Grq~~~~~a~~~~L~ei~---- 277 (367)
T TIGR02708 215 LSPRDIEEIAGYS-------GLPVYVK-----GPQCPEDADRALKAGASGIWVTNHG-GRQLDGGPAAFDSLQEVA---- 277 (367)
T ss_pred CCHHHHHHHHHhc-------CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECCcC-ccCCCCCCcHHHHHHHHH----
Confidence 3557888887643 4688998 44444333332 3899884211 2222 122232222
Q ss_pred HHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCc
Q 036921 301 YKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE 349 (527)
Q Consensus 301 ~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~E 349 (527)
++. .-.+|+|. ..+- .-.|+..++..|+|++|+..-
T Consensus 278 ~av-~~~i~vi~dGGIr------------~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 278 EAV-DKRVPIVFDSGVR------------RGQHVFKALASGADLVALGRP 314 (367)
T ss_pred HHh-CCCCcEEeeCCcC------------CHHHHHHHHHcCCCEEEEcHH
Confidence 111 12389998 6642 357999999999999998743
No 257
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=54.51 E-value=36 Score=28.83 Aligned_cols=42 Identities=26% Similarity=0.381 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCC---------cHHHHHHHhhCCCCCEEEE
Q 036921 396 SIASSAVRAAIKVKASVIICFTSS---------GRAARLIAKYRPTMPVLSV 438 (527)
Q Consensus 396 ~ia~~av~~a~~~~a~~Ivv~T~s---------G~tA~~is~~RP~~PIiAv 438 (527)
..+....+.+.+.++++||+-++. |.++..+.+.-| |||+.+
T Consensus 89 ~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv 139 (140)
T PF00582_consen 89 DVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVV 139 (140)
T ss_dssp SHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEE
T ss_pred ccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEe
Confidence 466777788999999999998877 788888888655 999965
No 258
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=54.44 E-value=1.7e+02 Score=29.19 Aligned_cols=63 Identities=14% Similarity=0.357 Sum_probs=51.8
Q ss_pred HHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEE
Q 036921 210 EVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIIL 278 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImI 278 (527)
..+..| .++|+|+|.+- ++...++.++-+.+++.| ....+.-+=+|+ ++.++.++...|.|++
T Consensus 75 ~~i~~f-a~agad~It~H-~E~~~~~~r~i~~Ik~~G--~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll 137 (220)
T COG0036 75 RYIEAF-AKAGADIITFH-AEATEHIHRTIQLIKELG--VKAGLVLNPATP--LEALEPVLDDVDLVLL 137 (220)
T ss_pred HHHHHH-HHhCCCEEEEE-eccCcCHHHHHHHHHHcC--CeEEEEECCCCC--HHHHHHHHhhCCEEEE
Confidence 445444 79999998886 678889999999999988 677788888885 6679999999999988
No 259
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=54.44 E-value=1.2e+02 Score=30.94 Aligned_cols=98 Identities=18% Similarity=0.172 Sum_probs=58.5
Q ss_pred hHHHHHHh-CCEEEEeC-CCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHH-HHHhC
Q 036921 265 HFDEILQA-ADGIILSR-GNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVLDG 340 (527)
Q Consensus 265 nldeI~~~-sDgImIaR-gDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n-av~~g 340 (527)
+++-.++. .||++++- .-=+..+..++-..+.+.+++.++ -..|+++ +. ..+-.|+-+.+. |...|
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~st~~~i~~a~~a~~~G 96 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-GRVPVIAGVG---------ANSTEEAIELARHAQDAG 96 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-TSSEEEEEEE---------SSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-CceEEEecCc---------chhHHHHHHHHHHHhhcC
Confidence 34445544 59999952 112234445554455555554432 3568888 65 334455554444 77789
Q ss_pred CcEEEeCCccccCCChHHHHHHHHHHHHHHhh
Q 036921 341 SDAILLGAETLRGLYPVETISIVGKICAEAEK 372 (527)
Q Consensus 341 ~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~ 372 (527)
+|++|+..=--...-+-+.+++.+.|+..++.
T Consensus 97 ad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~ 128 (289)
T PF00701_consen 97 ADAVLVIPPYYFKPSQEELIDYFRAIADATDL 128 (289)
T ss_dssp -SEEEEEESTSSSCCHHHHHHHHHHHHHHSSS
T ss_pred ceEEEEeccccccchhhHHHHHHHHHHhhcCC
Confidence 99999875544455677888999999966553
No 260
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=54.22 E-value=2.1e+02 Score=30.95 Aligned_cols=49 Identities=14% Similarity=0.060 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHc-CCcEEE-ecchhhhhcCCCCChHhhhhHHH-HHHhCCcEEEeCCcc
Q 036921 292 VFLFQKAALYKCNMA-GKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLGAET 350 (527)
Q Consensus 292 v~~~qk~Ii~~c~~~-gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n-av~~g~D~imLs~Et 350 (527)
-+..-+++++.++++ .+|+++ - .|.-.++.+++. +...|+|+|.+.+=+
T Consensus 166 ~~e~~~~i~~~Vk~~~~iPv~vKL----------sPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 166 DCDLLEEVCGWINAKATVPVWAKM----------TPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred CHHHHHHHHHHHHHhhcCceEEEe----------CCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 367777888888775 799998 2 355556777777 667899999998644
No 261
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.13 E-value=2.4e+02 Score=28.12 Aligned_cols=105 Identities=16% Similarity=0.143 Sum_probs=70.2
Q ss_pred EEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh----CCEEEEeCCCCcCCCCchhHHH-----
Q 036921 224 LSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA----ADGIILSRGNLGIDLPPEKVFL----- 294 (527)
Q Consensus 224 I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~----sDgImIaRgDLg~e~~~~~v~~----- 294 (527)
|.+=...++++...+-+.|-+.|. . .+=.-.-|+.+++.+.++.+. .+.++||-|= -+..+.+..
T Consensus 18 i~Vvr~~~~~~a~~~~~al~~gGi--~-~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGT---Vl~~e~a~~a~~aG 91 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACYDGGA--R-VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGS---IVDAATAALYIQLG 91 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCC--C-EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEe---CcCHHHHHHHHHcC
Confidence 444446788888888888877662 1 233344677788888877632 2457787552 233333333
Q ss_pred --------HHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 295 --------FQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 295 --------~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
.-..+++.|+++|.|++= --.=.+++..|...|+|.+=|=
T Consensus 92 A~FiVsP~~~~~v~~~~~~~~i~~iP-------------G~~TpsEi~~A~~~Ga~~vKlF 139 (222)
T PRK07114 92 ANFIVTPLFNPDIAKVCNRRKVPYSP-------------GCGSLSEIGYAEELGCEIVKLF 139 (222)
T ss_pred CCEEECCCCCHHHHHHHHHcCCCEeC-------------CCCCHHHHHHHHHCCCCEEEEC
Confidence 336899999999999883 3334466788888999998874
No 262
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=53.91 E-value=19 Score=38.68 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=29.7
Q ss_pred cCCcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 408 VKASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 408 ~~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
.+++..+|.|.||.||.-+|. .+|..|-|.+|+
T Consensus 284 vq~DGliVaTPTGSTAYS~sAGGSlvhP~vpAIlvTP 320 (409)
T KOG2178|consen 284 VQGDGLIVATPTGSTAYSASAGGSLVHPSVPAILVTP 320 (409)
T ss_pred EecceEEEecCCchhhhHhhcCCceecCCCCeEEEec
Confidence 578999999999999999886 799999999865
No 263
>PLN03013 cysteine synthase
Probab=53.88 E-value=1.4e+02 Score=32.69 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchh
Q 036921 298 AALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQD 377 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~ 377 (527)
-+...|+..|.|+++. .|..+...-+...-..|++.+...+. .| -.++++...+++++....+ +-
T Consensus 189 ALA~~a~~~G~~~~Vv----------vP~~~s~~K~~~ira~GAeVi~v~~~--~~--~~~a~~~A~ela~~~~g~~-~~ 253 (429)
T PLN03013 189 GLAFIAASRGYRLILT----------MPASMSMERRVLLKAFGAELVLTDPA--KG--MTGAVQKAEEILKNTPDAY-ML 253 (429)
T ss_pred HHHHHHHHcCCCEEEE----------ECCCCcHHHHHHHHHcCCEEEEECCC--CC--hHHHHHHHHHHHhhcCCeE-eC
Confidence 3455899999998872 23333334444455579998876432 11 2345566666554321221 11
Q ss_pred hhhhhhhcccCCCCChHHHHHHHHHHHHHhc--CCcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 378 LYFKKTVKCVGEPMTHLESIASSAVRAAIKV--KASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~--~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
..|.+ +..+..-....+.++.+++ +.+.+|+..-+|.+..-+++ ..|.+.|+++-+
T Consensus 254 ~qy~N-------p~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep 315 (429)
T PLN03013 254 QQFDN-------PANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEP 315 (429)
T ss_pred CCCCC-------HHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEe
Confidence 11110 1111111122345555555 48999999999988665555 479999999843
No 264
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=53.74 E-value=2.1e+02 Score=31.57 Aligned_cols=179 Identities=17% Similarity=0.135 Sum_probs=100.3
Q ss_pred CCCHhhHHHHHhhcccccccEEEe----------cCCCCHHHHHHHHHHHHHcCCCCCce--EEEeecChHhHhh-----
Q 036921 203 TLSDKDKEVISSWGVQNKIDFLSL----------SYTRHAEDVRQAREYLSKLGDLSQTQ--IFAKIENIEGLTH----- 265 (527)
Q Consensus 203 ~lt~~D~~di~~~~~~~g~d~I~~----------sfV~s~~dv~~lr~~l~~~~~~~~~~--IiaKIEt~~av~n----- 265 (527)
.++..|+..|....-+.|++.|=+ +|+.-. +-+.++.+ .+.. .++. .++.--|.-|..+
T Consensus 22 ~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~-p~e~l~~l-~~~~--~~~~l~~l~r~~N~~G~~~~pddv 97 (448)
T PRK12331 22 RMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNED-PWERLRKI-RKAV--KKTKLQMLLRGQNLLGYRNYADDV 97 (448)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCC-HHHHHHHH-HHhC--CCCEEEEEeccccccccccCchhh
Confidence 356677776654445577777644 565432 33444433 2222 2333 3355555566644
Q ss_pred H----HHHHHh-CCE--EEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHH-HH
Q 036921 266 F----DEILQA-ADG--IILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVAN-AV 337 (527)
Q Consensus 266 l----deI~~~-sDg--ImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~n-av 337 (527)
. +.-++. .|. |+.+-.|+ .. .+.+++.++++|+.+-++ + +....|+-+.+-+.+++. ++
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~---------~n-~~~~v~~ak~~G~~v~~~--i-~~t~~p~~~~~~~~~~a~~l~ 164 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDV---------RN-LETAVKATKKAGGHAQVA--I-SYTTSPVHTIDYFVKLAKEMQ 164 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH---------HH-HHHHHHHHHHcCCeEEEE--E-EeecCCCCCHHHHHHHHHHHH
Confidence 1 222222 253 34444443 22 455789999999865431 0 222345556666666665 66
Q ss_pred HhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcE
Q 036921 338 LDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASV 412 (527)
Q Consensus 338 ~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~ 412 (527)
..|+|.|.+. +|+=--.|.++-+.+..+.++.. .....+.++ ..-+|.+....|.+.+|+.
T Consensus 165 ~~Gad~I~i~-Dt~G~l~P~~v~~lv~alk~~~~--~pi~~H~Hn-----------t~GlA~AN~laAieaGad~ 225 (448)
T PRK12331 165 EMGADSICIK-DMAGILTPYVAYELVKRIKEAVT--VPLEVHTHA-----------TSGIAEMTYLKAIEAGADI 225 (448)
T ss_pred HcCCCEEEEc-CCCCCCCHHHHHHHHHHHHHhcC--CeEEEEecC-----------CCCcHHHHHHHHHHcCCCE
Confidence 6799999998 77777789999888888765542 111111121 1134455555677778884
No 265
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=53.67 E-value=67 Score=33.64 Aligned_cols=64 Identities=9% Similarity=0.136 Sum_probs=42.1
Q ss_pred CCeEEEEecCCCCCCH----HHHHHHHHcCCCeEEeecCCCC-----HHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 036921 28 AMTKIVGTLGPKSRSV----DVISGCLKAGMSVARFDFSWGN-----TEYHQETLENLKAAVKTTKKLCAVMLDTV 94 (527)
Q Consensus 28 ~~tkIi~TiGp~~~~~----~~l~~l~~~G~~v~RiN~shg~-----~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~ 94 (527)
.+...-+|+|....++ +..+++.+.|.+.+.+...|+. .+.-.+.++.+|++ .|..+.+++|..
T Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~---~g~~~~l~vDaN 197 (357)
T cd03316 125 DRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA---VGPDVDLMVDAN 197 (357)
T ss_pred CceeeEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh---hCCCCEEEEECC
Confidence 3455667776654233 4566678899999999999987 56566666666654 454455555553
No 266
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=53.44 E-value=1.4e+02 Score=30.73 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=59.5
Q ss_pred HHHHHhhcccccccEEEec------CCCCHHHHHHHHH-HHHHcCCCCCceEEEeecChHhHhhHHHHHHh-----CCEE
Q 036921 209 KEVISSWGVQNKIDFLSLS------YTRHAEDVRQARE-YLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-----ADGI 276 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~s------fV~s~~dv~~lr~-~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-----sDgI 276 (527)
.+.+.++.++.|+|+|++. +--|.++=+++-+ ..+..+ .++.|++-+-+ +.+..-+.++. +|++
T Consensus 28 l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~--g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav 103 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK--GKVPVYTGVGG--NTSDAIEIARLAEKAGADGY 103 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC--CCCcEEEecCc--cHHHHHHHHHHHHHhCCCEE
Confidence 3333357789999999874 4455666666554 344434 57889998842 34444444443 3999
Q ss_pred EEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 277 ILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 277 mIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
|+.+--+.- ..-+.+...-+.|.+ +.+.|+++
T Consensus 104 ~~~pP~y~~-~s~~~i~~~f~~v~~---a~~~pvil 135 (296)
T TIGR03249 104 LLLPPYLIN-GEQEGLYAHVEAVCE---STDLGVIV 135 (296)
T ss_pred EECCCCCCC-CCHHHHHHHHHHHHh---ccCCCEEE
Confidence 987655432 234566666666655 45799987
No 267
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=53.43 E-value=37 Score=37.59 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=42.4
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHH
Q 036921 28 AMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKA 78 (527)
Q Consensus 28 ~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~ 78 (527)
.+..+-+-+|+.-.+.+..+.|+++|++++-++-+||..+...+.++.+|+
T Consensus 215 g~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 215 GRLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred CCEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHh
Confidence 356677777865577899999999999999999999999877777777775
No 268
>PRK12677 xylose isomerase; Provisional
Probab=53.39 E-value=3.1e+02 Score=29.50 Aligned_cols=150 Identities=11% Similarity=0.033 Sum_probs=79.9
Q ss_pred HHHHHhhcccccccEEEecC---C-------CCHHHHHHHHHHHHHcCCCCCceEEEe-ec-------------------
Q 036921 209 KEVISSWGVQNKIDFLSLSY---T-------RHAEDVRQAREYLSKLGDLSQTQIFAK-IE------------------- 258 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sf---V-------~s~~dv~~lr~~l~~~~~~~~~~IiaK-IE------------------- 258 (527)
..+....+.+.|+++|-+.. + .....+.++++++.+.| +.|.+- .+
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~G----L~v~~v~~n~f~~p~~~~g~lts~d~~~ 108 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETG----LVVPMVTTNLFTHPVFKDGAFTSNDRDV 108 (384)
T ss_pred HHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcC----CeeEEEecCCCCCccccCCcCCCCCHHH
Confidence 33333456789999987752 1 11124888999998877 232211 11
Q ss_pred ChHhHhhHHHHHHh-----CCEEEEeCCCCcCCCCc--------hhHHHHHHHHHHHHHHcC--CcEEE-ecchhhhhcC
Q 036921 259 NIEGLTHFDEILQA-----ADGIILSRGNLGIDLPP--------EKVFLFQKAALYKCNMAG--KPAVV-TRVVDSMTDN 322 (527)
Q Consensus 259 t~~av~nldeI~~~-----sDgImIaRgDLg~e~~~--------~~v~~~qk~Ii~~c~~~g--Kpvi~-Tq~LeSM~~~ 322 (527)
...+++.+.+-++. ++.+.+-.|--|.+++. +.+...-+.+...++++| ..+.+ ..--+.+-.+
T Consensus 109 R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~~~ 188 (384)
T PRK12677 109 RRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRGDI 188 (384)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCCCe
Confidence 13345444444433 35666655644444422 233334446666666655 55554 3222222234
Q ss_pred CCCChHhhhhHHHHHHhCC-cEEE--eCCccccCCChHHHHHH
Q 036921 323 LRPTRAEATDVANAVLDGS-DAIL--LGAETLRGLYPVETISI 362 (527)
Q Consensus 323 p~PtraEv~Dv~nav~~g~-D~im--Ls~Eta~G~yP~e~V~~ 362 (527)
..||-.+...+.+.+..+. =+++ +......|..|.+++..
T Consensus 189 ~l~t~~~al~li~~lg~~~~vGv~lD~gH~~m~g~n~~~~i~~ 231 (384)
T PRK12677 189 LLPTVGHALAFIATLEHPEMVGLNPEVGHEQMAGLNFTHGIAQ 231 (384)
T ss_pred eeCCHHHHHHHHHHhCCCccEEEeeechHHHhcCCCHHHHHHH
Confidence 5688888777777764333 1244 34555567677777654
No 269
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=53.09 E-value=1.5e+02 Score=30.05 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=59.2
Q ss_pred hhcccccccEEEecC------CCCHHHHHHHHHHHHHcCCCCCceEEEeecC---hHhHhhHHHHHHh-CCEEEEeCCCC
Q 036921 214 SWGVQNKIDFLSLSY------TRHAEDVRQAREYLSKLGDLSQTQIFAKIEN---IEGLTHFDEILQA-ADGIILSRGNL 283 (527)
Q Consensus 214 ~~~~~~g~d~I~~sf------V~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt---~~av~nldeI~~~-sDgImIaRgDL 283 (527)
++.++.|+++|++.- --|.++=+++-+...+.-. .++.|++-+-. .++++......+. +|++|+.+-..
T Consensus 28 ~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 28 EFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 477899999998762 2344555555444433321 56889988853 3444444444333 39999987654
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCcEEE-ec
Q 036921 284 GIDLPPEKVFLFQKAALYKCNMAGKPAVV-TR 314 (527)
Q Consensus 284 g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq 314 (527)
. ..+-+.+...-+.|+++ .+.|+++ ..
T Consensus 107 ~-~~~~~~l~~~~~~ia~~---~~~pi~lYn~ 134 (284)
T cd00950 107 N-KPSQEGLYAHFKAIAEA---TDLPVILYNV 134 (284)
T ss_pred C-CCCHHHHHHHHHHHHhc---CCCCEEEEEC
Confidence 2 23345666666666664 5899998 53
No 270
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=52.82 E-value=2e+02 Score=29.72 Aligned_cols=102 Identities=17% Similarity=0.200 Sum_probs=71.0
Q ss_pred CceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE--ecch--hhhhcCCC
Q 036921 250 QTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV--TRVV--DSMTDNLR 324 (527)
Q Consensus 250 ~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~--Tq~L--eSM~~~p~ 324 (527)
.+++...+... .++.+.+-++. .+-||+..- ++|.++....-+++.+.|+++|.++=. .++. |.++....
T Consensus 77 ~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S----~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s 151 (293)
T PRK07315 77 TVPVAIHLDHG-HYEDALECIEVGYTSIMFDGS----HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKG 151 (293)
T ss_pred CCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCcc
Confidence 56888888887 56655555554 378999744 457889889999999999999999866 3332 22322111
Q ss_pred CChHhhhhHHHHHHhCCcEEEeCCccccCCChH
Q 036921 325 PTRAEATDVANAVLDGSDAILLGAETLRGLYPV 357 (527)
Q Consensus 325 PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~ 357 (527)
- .....++..++..|+|++-++-=|.-|.||-
T Consensus 152 ~-~t~peea~~f~~tgvD~LAv~iG~vHG~y~t 183 (293)
T PRK07315 152 E-LAPIEDAKAMVETGIDFLAAGIGNIHGPYPE 183 (293)
T ss_pred C-CCCHHHHHHHHHcCCCEEeeccccccccCCC
Confidence 1 1233444566788999999998888888864
No 271
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=52.32 E-value=1.1e+02 Score=25.15 Aligned_cols=54 Identities=28% Similarity=0.303 Sum_probs=43.3
Q ss_pred CCCCCHHHHHH-HHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCC-CC
Q 036921 38 PKSRSVDVISG-CLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTV-GP 96 (527)
Q Consensus 38 p~~~~~~~l~~-l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~-Gp 96 (527)
-.|.+=|.+.+ +-..|+.++|-.-++|..+...+++..+++ |..++|-.|-+ ||
T Consensus 17 S~s~DGe~ia~~~~~~G~~~iRGSs~rgg~~Alr~~~~~lk~-----G~~~~itpDGPrGP 72 (74)
T PF04028_consen 17 SRSRDGELIARVLERFGFRTIRGSSSRGGARALREMLRALKE-----GYSIAITPDGPRGP 72 (74)
T ss_pred ccCcCHHHHHHHHHHcCCCeEEeCCCCcHHHHHHHHHHHHHC-----CCeEEEeCCCCCCC
Confidence 34677788887 556799999999999999988888877773 66789999865 66
No 272
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.16 E-value=49 Score=34.10 Aligned_cols=66 Identities=24% Similarity=0.266 Sum_probs=48.1
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhH--hhHHHHHHh-CCEEEEeC
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGL--THFDEILQA-ADGIILSR 280 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av--~nldeI~~~-sDgImIaR 280 (527)
.+++. .+++.|+|.|.+=.. ++++++++.+.+.+.+...++ +||---|+ +|+.++++. .|+|-+|.
T Consensus 192 leea~-~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~----~leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 192 LEDAL-KAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERV----KIEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred HHHHH-HHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCE----EEEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 45554 468999999999887 899999999988776521233 45555555 577788877 59998853
No 273
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=52.16 E-value=1.1e+02 Score=31.08 Aligned_cols=87 Identities=21% Similarity=0.185 Sum_probs=56.2
Q ss_pred HHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhC--CEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecc
Q 036921 238 AREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAA--DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRV 315 (527)
Q Consensus 238 lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~s--DgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~ 315 (527)
+++.|.... .-...+..+-++. +-||+..+ |.++|. +|=+.-.+..+ ..++.+|+.+|.++++
T Consensus 10 lk~~l~~g~--~~~g~~~~~~sp~----~~e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~i~a~~~~g~~~lV--- 74 (256)
T PRK10558 10 FKAALAAKQ--VQIGCWSALANPI----TTEVLGLAGFDWLVLD-----GEHAPNDVSTF-IPQLMALKGSASAPVV--- 74 (256)
T ss_pred HHHHHHcCC--ceEEEEEcCCCcH----HHHHHHhcCCCEEEEc-----cccCCCCHHHH-HHHHHHHhhcCCCcEE---
Confidence 555565422 2244566665554 44666665 999995 34444344444 4688899999999997
Q ss_pred hhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 316 VDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 316 LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
++...+-..+..++..|+++||+.
T Consensus 75 --------Rvp~~~~~~i~r~LD~Ga~giivP 98 (256)
T PRK10558 75 --------RVPTNEPVIIKRLLDIGFYNFLIP 98 (256)
T ss_pred --------ECCCCCHHHHHHHhCCCCCeeeec
Confidence 222234456677888899999996
No 274
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=51.81 E-value=30 Score=34.72 Aligned_cols=173 Identities=20% Similarity=0.224 Sum_probs=90.0
Q ss_pred EEEeecChHhHhhHHHHHHh-----CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHH-HcCCcEEEecchhhhhcCCCCC
Q 036921 253 IFAKIENIEGLTHFDEILQA-----ADGIILSRGNLGIDLPPEKVFLFQKAALYKCN-MAGKPAVVTRVVDSMTDNLRPT 326 (527)
Q Consensus 253 IiaKIEt~~av~nldeI~~~-----sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~-~~gKpvi~Tq~LeSM~~~p~Pt 326 (527)
=+-||.=..- ++.++|++. .|+|||| |-+|++. ..-.+.+++++ ..+.|+|. .|.
T Consensus 18 H~tliDP~k~-~~~~ei~~~~~~~GTDaImIG-GS~gvt~------~~~~~~v~~ik~~~~lPvil-----------fP~ 78 (240)
T COG1646 18 HLTLIDPDKT-EEADEIAEAAAEAGTDAIMIG-GSDGVTE------ENVDNVVEAIKERTDLPVIL-----------FPG 78 (240)
T ss_pred EEEEeCcccc-cccHHHHHHHHHcCCCEEEEC-CcccccH------HHHHHHHHHHHhhcCCCEEE-----------ecC
Confidence 3445533222 556666654 4999998 5555442 23346677777 89999997 332
Q ss_pred hHhhhhHHHHHHhCCcEEEe-----CCcc--ccCCChHHHHHHHHHHHHHH--hhcc--chhhhhhhhhcccCCCCChHH
Q 036921 327 RAEATDVANAVLDGSDAILL-----GAET--LRGLYPVETISIVGKICAEA--EKVF--NQDLYFKKTVKCVGEPMTHLE 395 (527)
Q Consensus 327 raEv~Dv~nav~~g~D~imL-----s~Et--a~G~yP~e~V~~~~~i~~~a--E~~~--~~~~~~~~~~~~~~~~~~~~~ 395 (527)
-- +.+..++|+++. |.++ -+| ..++..+...++..+. |.++ +...---......+.|.+..
T Consensus 79 ~~------~~is~~aDavff~svLNS~n~~~i~g-aq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~- 150 (240)
T COG1646 79 SP------SGISPYADAVFFPSVLNSDNPYWIVG-AQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKE- 150 (240)
T ss_pred Ch------hccCccCCeEEEEEEecCCCcccccc-hhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcH-
Confidence 21 234458888765 2222 123 3455566666555321 1111 11000000111112333443
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCCcHH----HHHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhcc
Q 036921 396 SIASSAVRAAIKVKASVIICFTSSGRA----ARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLI 463 (527)
Q Consensus 396 ~ia~~av~~a~~~~a~~Ivv~T~sG~t----A~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L 463 (527)
.++..+.-.++-++-..+-+--.||.. ...+++.....|.+-.- ..+++..||++..
T Consensus 151 ~iaa~y~la~~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~~LivGG-----------GIrs~E~A~~~a~ 211 (240)
T COG1646 151 DIAAYYALAEKYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDTPLIVGG-----------GIRSPEQAREMAE 211 (240)
T ss_pred HHHHHHHHHHHHhCCeEEEEEecCCCCCCcCHHHHHHhhccceEEEcC-----------CcCCHHHHHHHHH
Confidence 455455555666777755554444432 56677777777766431 1467888888754
No 275
>PRK09224 threonine dehydratase; Reviewed
Probab=51.35 E-value=2.4e+02 Score=31.42 Aligned_cols=118 Identities=16% Similarity=0.167 Sum_probs=70.3
Q ss_pred HHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhcc
Q 036921 296 QKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVF 374 (527)
Q Consensus 296 qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~ 374 (527)
=.-+...|+..|.|+.+ - |..+.-..+...-..|++.++.. ...-++.+...++.++ +..
T Consensus 80 a~avA~aa~~lGi~~~Ivm-----------P~~tp~~K~~~~r~~GA~Vi~~g------~~~~~a~~~a~~l~~~-~g~- 140 (504)
T PRK09224 80 AQGVALSAARLGIKAVIVM-----------PVTTPDIKVDAVRAFGGEVVLHG------DSFDEAYAHAIELAEE-EGL- 140 (504)
T ss_pred HHHHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHhCCCEEEEEC------CCHHHHHHHHHHHHHh-cCC-
Confidence 34567789999999886 2 22222233344556799877653 2346777777666544 222
Q ss_pred chhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCcHHHHHH----HhhCCCCCEEEEee
Q 036921 375 NQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK--ASVIICFTSSGRAARLI----AKYRPTMPVLSVVI 440 (527)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~tA~~i----s~~RP~~PIiAv~~ 440 (527)
.|-..|.+ | .....-..-+.++.++++ .+.|||..-+|.++.-+ ..++|...|+++-+
T Consensus 141 ~~v~~f~~-------~-~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~ 204 (504)
T PRK09224 141 TFIHPFDD-------P-DVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEP 204 (504)
T ss_pred EEeCCCCC-------c-HHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 22111210 0 112222334566777764 68999999999775554 45789999999843
No 276
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=51.21 E-value=1.4e+02 Score=32.82 Aligned_cols=134 Identities=13% Similarity=0.105 Sum_probs=0.0
Q ss_pred hhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhC----CEEEEeC--
Q 036921 207 KDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAA----DGIILSR-- 280 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~s----DgImIaR-- 280 (527)
.|..++. ++.|+|+|-++ +.--....+|.++ ..-.++. -+..+.+|+.++. |.|.+|+
T Consensus 267 ND~~dlA---l~~gAdGVHLG--QeDL~~~~aR~il------g~~~iIG-----vStHs~eEl~~A~~~gaDYI~lGPIF 330 (437)
T PRK12290 267 NDYWQLA---IKHQAYGVHLG--QEDLEEANLAQLT------DAGIRLG-----LSTHGYYELLRIVQIQPSYIALGHIF 330 (437)
T ss_pred ECHHHHH---HHcCCCEEEcC--hHHcchhhhhhhc------CCCCEEE-----EecCCHHHHHHHhhcCCCEEEECCcc
Q ss_pred -----CCCcCCCCchhHHHHHHHH--HHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCcccc
Q 036921 281 -----GNLGIDLPPEKVFLFQKAA--LYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLR 352 (527)
Q Consensus 281 -----gDLg~e~~~~~v~~~qk~I--i~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~ 352 (527)
-+-...+|++.+..+++.+ +..++..++|++- ..+ ...++......|+|++-..+.-..
T Consensus 331 pT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-------------~~~Ni~~vl~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 331 PTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-------------DQSNAEQVWQCGVSSLAVVRAITL 397 (437)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-------------CHHHHHHHHHcCCCEEEEehHhhc
Q ss_pred CCChHHHHHHHHHHHHH
Q 036921 353 GLYPVETISIVGKICAE 369 (527)
Q Consensus 353 G~yP~e~V~~~~~i~~~ 369 (527)
-..|.++++.+.++...
T Consensus 398 A~DP~aa~~~l~~~~~~ 414 (437)
T PRK12290 398 AEDPQLVIEFFDQVMAE 414 (437)
T ss_pred CCCHHHHHHHHHHHHhh
No 277
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=51.19 E-value=1.7e+02 Score=29.56 Aligned_cols=95 Identities=20% Similarity=0.210 Sum_probs=57.7
Q ss_pred HHHHHHh-CCEEEEeCCCCc--CCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhh-hhHHHHHHhC
Q 036921 266 FDEILQA-ADGIILSRGNLG--IDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEA-TDVANAVLDG 340 (527)
Q Consensus 266 ldeI~~~-sDgImIaRgDLg--~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv-~Dv~nav~~g 340 (527)
++-+++. .||+++. |--| ..+..++-..+.+.+.+.++ -..|+++ .. .++-.|. .-.-.|...|
T Consensus 27 i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~~~~~~~~~a~~a~~~G 95 (284)
T cd00950 27 IEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGTG---------SNNTAEAIELTKRAEKAG 95 (284)
T ss_pred HHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEeccC---------CccHHHHHHHHHHHHHcC
Confidence 3444432 4899986 4332 34444554455555554442 2467776 43 2233344 3344477889
Q ss_pred CcEEEeCCccccCCChHHHHHHHHHHHHHHh
Q 036921 341 SDAILLGAETLRGLYPVETISIVGKICAEAE 371 (527)
Q Consensus 341 ~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE 371 (527)
+|++|+..-.....-+-+.+++.+.|+..+.
T Consensus 96 ~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~ 126 (284)
T cd00950 96 ADAALVVTPYYNKPSQEGLYAHFKAIAEATD 126 (284)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHhcCC
Confidence 9999999776555556888999999988654
No 278
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=51.17 E-value=62 Score=32.61 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=51.8
Q ss_pred CEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCcccc
Q 036921 274 DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLR 352 (527)
Q Consensus 274 DgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~ 352 (527)
..+|---.-.|...|+.. +...+.|++ +...|||+ ..+ -+ -+|++.|...|+|+|+++.-.|.
T Consensus 146 aavMPlgsPIGSg~Gi~n-~~~l~~i~~---~~~vPvIvDAGi---------G~---pSdaa~AMElG~daVLvNTAiA~ 209 (247)
T PF05690_consen 146 AAVMPLGSPIGSGRGIQN-PYNLRIIIE---RADVPVIVDAGI---------GT---PSDAAQAMELGADAVLVNTAIAK 209 (247)
T ss_dssp SEBEEBSSSTTT---SST-HHHHHHHHH---HGSSSBEEES------------S---HHHHHHHHHTT-SEEEESHHHHT
T ss_pred CEEEecccccccCcCCCC-HHHHHHHHH---hcCCcEEEeCCC---------CC---HHHHHHHHHcCCceeehhhHHhc
Confidence 355654444555555544 234444444 34899998 542 22 25779999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHH
Q 036921 353 GLYPVETISIVGKICAEA 370 (527)
Q Consensus 353 G~yP~e~V~~~~~i~~~a 370 (527)
.+.|+.-.+-|+.-++..
T Consensus 210 A~dPv~MA~Af~~AV~AG 227 (247)
T PF05690_consen 210 AKDPVAMARAFKLAVEAG 227 (247)
T ss_dssp SSSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999988877777665543
No 279
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=50.89 E-value=2.3e+02 Score=29.40 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=56.7
Q ss_pred HHHHHh-CCEEEEe-CCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHH-HHHHhCCc
Q 036921 267 DEILQA-ADGIILS-RGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVA-NAVLDGSD 342 (527)
Q Consensus 267 deI~~~-sDgImIa-RgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~-nav~~g~D 342 (527)
+..++. .|||++. ---=...+..++-..+.+..++.+ +-.+|+|+ +. ..+-.|.-+.+ .|-..|+|
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~---------~~~t~~ai~~a~~A~~~Gad 105 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGAT---------TLNTRDTIARTRALLDLGAD 105 (309)
T ss_pred HHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEec---------cCCHHHHHHHHHHHHHhCCC
Confidence 344443 4899984 211223445555555555555554 34588888 54 22334444444 46667999
Q ss_pred EEEeCCccccCCChHHHHHHHHHHHHHHh
Q 036921 343 AILLGAETLRGLYPVETISIVGKICAEAE 371 (527)
Q Consensus 343 ~imLs~Eta~G~yP~e~V~~~~~i~~~aE 371 (527)
++|+..=--...-+-+.++..+.|+..++
T Consensus 106 ~vlv~~P~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 106 GTMLGRPMWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred EEEECCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 99998653323234688888999998874
No 280
>PRK06815 hypothetical protein; Provisional
Probab=50.86 E-value=2.2e+02 Score=29.44 Aligned_cols=116 Identities=13% Similarity=0.180 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 298 AALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
-+...|+..|.|+.+ . |..+.-..+...-..|++.+...++ ..++.+...+++++- ...|
T Consensus 82 alA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~V~~~~~~------~~~~~~~a~~~~~~~--~~~~ 142 (317)
T PRK06815 82 GVALAAKLAGIPVTVYA-----------PEQASAIKLDAIRALGAEVRLYGGD------ALNAELAARRAAEQQ--GKVY 142 (317)
T ss_pred HHHHHHHHhCCCEEEEE-----------CCCCCHHHHHHHHHCCCEEEEECCC------HHHHHHHHHHHHHhc--CCEE
Confidence 467789999999887 3 2222223344555679999888653 355666555554331 1112
Q ss_pred hhhhhhhhcccCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCcHHHHHHH----hhCCCCCEEEEee
Q 036921 377 DLYFKKTVKCVGEPMTHLESIASSAVRAAIKV-KASVIICFTSSGRAARLIA----KYRPTMPVLSVVI 440 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~tA~~is----~~RP~~PIiAv~~ 440 (527)
-..|. .+ ...+.....+.++.+++ +.+.||+..-+|.+..-++ .+.|...|+++-+
T Consensus 143 ~~~~~-------~~-~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep 203 (317)
T PRK06815 143 ISPYN-------DP-QVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWP 203 (317)
T ss_pred ecCCC-------Ch-hhhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 11111 01 11222333456666665 4789999999998765544 4569999999854
No 281
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=50.83 E-value=2.6e+02 Score=27.58 Aligned_cols=139 Identities=12% Similarity=0.184 Sum_probs=92.4
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCC
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLP 288 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~ 288 (527)
.+++..+ .++|++.+.+- ++-.++..++.+.++++| -...+.-|=+| .|+.++..++..|-++|- ++|=|
T Consensus 77 eq~V~~~-a~agas~~tfH-~E~~q~~~~lv~~ir~~G--mk~G~alkPgT--~Ve~~~~~~~~~D~vLvM----tVePG 146 (224)
T KOG3111|consen 77 EQWVDQM-AKAGASLFTFH-YEATQKPAELVEKIREKG--MKVGLALKPGT--PVEDLEPLAEHVDMVLVM----TVEPG 146 (224)
T ss_pred HHHHHHH-HhcCcceEEEE-EeeccCHHHHHHHHHHcC--CeeeEEeCCCC--cHHHHHHhhccccEEEEE----EecCC
Confidence 3444434 68899977665 466566888888899888 55666667676 567777777777877772 34444
Q ss_pred c--hh-HHHHHHHHHHHHHHcCCcEE-E-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHH
Q 036921 289 P--EK-VFLFQKAALYKCNMAGKPAV-V-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIV 363 (527)
Q Consensus 289 ~--~~-v~~~qk~Ii~~c~~~gKpvi-~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~ 363 (527)
+ .+ ++....++-..-.++..+.| + ..+ .| +-+..+...||++++-..-.---..|-++++.|
T Consensus 147 FGGQkFme~mm~KV~~lR~kyp~l~ievDGGv--------~~-----~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~l 213 (224)
T KOG3111|consen 147 FGGQKFMEDMMPKVEWLREKYPNLDIEVDGGV--------GP-----STIDKAAEAGANMIVAGSAVFGAADPSDVISLL 213 (224)
T ss_pred CchhhhHHHHHHHHHHHHHhCCCceEEecCCc--------Cc-----chHHHHHHcCCCEEEecceeecCCCHHHHHHHH
Confidence 4 12 22333344444457889988 4 432 23 234556667999998876665667899999999
Q ss_pred HHHHHHH
Q 036921 364 GKICAEA 370 (527)
Q Consensus 364 ~~i~~~a 370 (527)
++.++.+
T Consensus 214 r~~v~~a 220 (224)
T KOG3111|consen 214 RNSVEKA 220 (224)
T ss_pred HHHHhhh
Confidence 9988764
No 282
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=50.74 E-value=2.4e+02 Score=27.23 Aligned_cols=109 Identities=20% Similarity=0.189 Sum_probs=69.9
Q ss_pred hHHHHHhhcccccccEEEec-----CCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhh---HHHHHHh-CCEEEE
Q 036921 208 DKEVISSWGVQNKIDFLSLS-----YTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTH---FDEILQA-ADGIIL 278 (527)
Q Consensus 208 D~~di~~~~~~~g~d~I~~s-----fV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~n---ldeI~~~-sDgImI 278 (527)
|..++.+...+.|++++.+. |=.+.++++.+++.. +++|+.| ..+.+ +++..+. +|++.+
T Consensus 32 ~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-------~iPi~~~----~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 32 DPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-------SLPVLRK----DFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-------CCCEEEC----CeecCHHHHHHHHHcCCCEEEE
Confidence 33333334478899999763 446788888888754 3566654 23333 3334333 599998
Q ss_pred eCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCc
Q 036921 279 SRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE 349 (527)
Q Consensus 279 aRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~E 349 (527)
+--||. . ..-+.+++.++..|..+++ ++ +-.| +..+...|+|.+..++.
T Consensus 101 ~~~~~~----~----~~~~~~~~~~~~~g~~~~v~v~-----------~~~e---~~~~~~~g~~~i~~t~~ 150 (217)
T cd00331 101 IVAALD----D----EQLKELYELARELGMEVLVEVH-----------DEEE---LERALALGAKIIGINNR 150 (217)
T ss_pred eeccCC----H----HHHHHHHHHHHHcCCeEEEEEC-----------CHHH---HHHHHHcCCCEEEEeCC
Confidence 755543 1 3446778888889998877 53 2333 56677789999998843
No 283
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=50.21 E-value=3e+02 Score=28.22 Aligned_cols=159 Identities=13% Similarity=0.033 Sum_probs=88.3
Q ss_pred CCcccccCCccccCCCCCHhhHHHHHhhccccc-----ccEEEe-cCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChH
Q 036921 188 SLFTLHASQIRIELPTLSDKDKEVISSWGVQNK-----IDFLSL-SYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIE 261 (527)
Q Consensus 188 ~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g-----~d~I~~-sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~ 261 (527)
.|-|..-|+. . +..++..|.+...+.| ++.|=+ || +.+|.++++..+.. +. ....+.+- ...
T Consensus 8 lRDG~Q~~~~-----~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~--~~~d~~~v~~~~~~-~~-~~~~v~~~--~r~ 75 (279)
T cd07947 8 FRDGQQARPP-----Y-TVEQIVKIYDYLHELGGGSGVIRQTEFFLY--TEKDREAVEACLDR-GY-KFPEVTGW--IRA 75 (279)
T ss_pred CCCcCCCCCC-----C-CHHHHHHHHHHHHHcCCCCCccceEEecCc--ChHHHHHHHHHHHc-CC-CCCEEEEE--ecC
Confidence 3556665554 2 4455555545667899 887744 44 55889999988853 21 12344442 222
Q ss_pred hHhhHHHHHHh-CCEEEE--eCCCCc----CCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhh--
Q 036921 262 GLTHFDEILQA-ADGIIL--SRGNLG----IDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEAT-- 331 (527)
Q Consensus 262 av~nldeI~~~-sDgImI--aRgDLg----~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~-- 331 (527)
-.+.++..+++ .|.|.+ +-.|+- .....++.....+.+++.|+.+|+.+-+ -+ .++|++..
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e---------d~~r~d~~~~ 146 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLE---------DITRADIYGF 146 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEE---------cccCCCcccc
Confidence 22334444433 354443 322321 1233467777788999999999988776 32 34444332
Q ss_pred ------hHHH-HHHhCCcE-EEeCCcccc-------CCChHHHHHHHHHHHH
Q 036921 332 ------DVAN-AVLDGSDA-ILLGAETLR-------GLYPVETISIVGKICA 368 (527)
Q Consensus 332 ------Dv~n-av~~g~D~-imLs~Eta~-------G~yP~e~V~~~~~i~~ 368 (527)
.++. +...|+|. +-|. +|.= +.+|.++-+++..+.+
T Consensus 147 v~~~~~~~~~~~~~~G~~~~i~l~-DTvG~a~P~~~~~~p~~v~~l~~~l~~ 197 (279)
T cd07947 147 VLPFVNKLMKLSKESGIPVKIRLC-DTLGYGVPYPGASLPRSVPKIIYGLRK 197 (279)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEec-cCCCcCCccccccchHHHHHHHHHHHH
Confidence 2222 22269994 6676 5532 2456677677666654
No 284
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=50.20 E-value=2.7e+02 Score=28.96 Aligned_cols=118 Identities=13% Similarity=0.121 Sum_probs=76.6
Q ss_pred EecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHH
Q 036921 225 SLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKC 303 (527)
Q Consensus 225 ~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c 303 (527)
.+.-.+++++|.++++.. +++|++|+=--. +...+.+.+. +|.| | ..+..-+ -..++...
T Consensus 56 g~~Rm~~p~~I~aIk~~V-------~iPVigk~Righ-~~Ea~~L~~~GvDiI-----D-~Te~lrp-----ad~~~~~~ 116 (293)
T PRK04180 56 GVARMADPKMIEEIMDAV-------SIPVMAKARIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADEEYHID 116 (293)
T ss_pred CeeecCCHHHHHHHHHhC-------CCCeEEeehhhH-HHHHHHHHHcCCCEE-----e-ccCCCCc-----hHHHHHHH
Confidence 334567888888887653 467888763211 4445555544 3766 4 2222111 11233333
Q ss_pred HH-cCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 304 NM-AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 304 ~~-~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
+. .+.|+.. .. .+.+..+++..|+|.|--+||.-.|+ -+|+|+-|+.|..+.-...-|
T Consensus 117 K~~f~~~fmad~~--------------~l~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~L~gy 176 (293)
T PRK04180 117 KWDFTVPFVCGAR--------------NLGEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRRLTSM 176 (293)
T ss_pred HHHcCCCEEccCC--------------CHHHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHHHhCC
Confidence 33 4888775 32 35566788999999999999999997 599999999999887765544
No 285
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=50.02 E-value=1.7e+02 Score=29.91 Aligned_cols=113 Identities=19% Similarity=0.305 Sum_probs=69.6
Q ss_pred HHHHHhhcccccccEEEe-cCCC-----------CHHHHHHHHHHHHHcCCCCCceEEEeecChHhH----hhHHHHHHh
Q 036921 209 KEVISSWGVQNKIDFLSL-SYTR-----------HAEDVRQAREYLSKLGDLSQTQIFAKIENIEGL----THFDEILQA 272 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~-sfV~-----------s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av----~nldeI~~~ 272 (527)
...+. .|...|+|||-+ .|+. ++.++.+.|+.|+ .+++|++-|--..+. ..++|++..
T Consensus 92 ~aal~-iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~-----~~v~i~adV~~kh~~~l~~~~~~e~a~~ 165 (257)
T TIGR00259 92 VAALA-IAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLG-----SEVKILADIVVKHAVHLGNRDLESIALD 165 (257)
T ss_pred HHHHH-HHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcC-----CCcEEEeceeecccCcCCCCCHHHHHHH
Confidence 34553 567899999988 5553 3455555555554 578999888544443 467777762
Q ss_pred ------CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEE
Q 036921 273 ------ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAIL 345 (527)
Q Consensus 273 ------sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~im 345 (527)
+|||++.---=|.+..++.+..+.+ ..-..|+++ +.+ .| . .+..++.. +|++.
T Consensus 166 ~~~~~~aDavivtG~~TG~~~d~~~l~~vr~------~~~~~PvllggGv--------t~--e---Nv~e~l~~-adGvi 225 (257)
T TIGR00259 166 TVERGLADAVILSGKTTGTEVDLELLKLAKE------TVKDTPVLAGSGV--------NL--E---NVEELLSI-ADGVI 225 (257)
T ss_pred HHHhcCCCEEEECcCCCCCCCCHHHHHHHHh------ccCCCeEEEECCC--------CH--H---HHHHHHhh-CCEEE
Confidence 6999997555666666655542221 123579999 764 22 2 33444433 88888
Q ss_pred eC
Q 036921 346 LG 347 (527)
Q Consensus 346 Ls 347 (527)
.+
T Consensus 226 Vg 227 (257)
T TIGR00259 226 VA 227 (257)
T ss_pred EC
Confidence 86
No 286
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=49.85 E-value=3e+02 Score=29.25 Aligned_cols=137 Identities=13% Similarity=0.091 Sum_probs=91.0
Q ss_pred ccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHH
Q 036921 217 VQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQ 296 (527)
Q Consensus 217 ~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~q 296 (527)
-+.|+|.|-++ |.+.++...++++-.+ -+++++|-|--.--+ -++.+-...|.+=|-||..|-+= --
T Consensus 46 ~~aG~dIVRvt-v~~~e~A~A~~~Ik~~----~~vPLVaDiHf~~rl-a~~~~~~g~~k~RINPGNig~~~-------~v 112 (361)
T COG0821 46 ERAGCDIVRVT-VPDMEAAEALKEIKQR----LNVPLVADIHFDYRL-ALEAAECGVDKVRINPGNIGFKD-------RV 112 (361)
T ss_pred HHcCCCEEEEe-cCCHHHHHHHHHHHHh----CCCCEEEEeeccHHH-HHHhhhcCcceEEECCcccCcHH-------HH
Confidence 46899999998 8888888888876554 368999998543111 12222223699999999887432 45
Q ss_pred HHHHHHHHHcCCcE--EE-ecchhhhhc--CCCCChHhh-----hhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHH
Q 036921 297 KAALYKCNMAGKPA--VV-TRVVDSMTD--NLRPTRAEA-----TDVANAVLDGSDAILLGAETLRGLYPVETISIVGKI 366 (527)
Q Consensus 297 k~Ii~~c~~~gKpv--i~-Tq~LeSM~~--~p~PtraEv-----~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i 366 (527)
+.++++|+++|||+ ++ ..=||-... -..||+.-+ ..+.-+-..|++=+.+|--. .-|.+.|+.-+.+
T Consensus 113 ~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~---Sdv~~~v~aYr~l 189 (361)
T COG0821 113 REVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKA---SDVQLMVAAYRLL 189 (361)
T ss_pred HHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEc---CCHHHHHHHHHHH
Confidence 78999999999996 44 555554332 226776544 22233667788889998543 4566666665555
Q ss_pred HHH
Q 036921 367 CAE 369 (527)
Q Consensus 367 ~~~ 369 (527)
.++
T Consensus 190 A~~ 192 (361)
T COG0821 190 AKR 192 (361)
T ss_pred HHh
Confidence 544
No 287
>PRK15005 universal stress protein F; Provisional
Probab=49.66 E-value=38 Score=29.94 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCcEEEEECCC--------cHHHHHHHhhCCCCCEEEE
Q 036921 398 ASSAVRAAIKVKASVIICFTSS--------GRAARLIAKYRPTMPVLSV 438 (527)
Q Consensus 398 a~~av~~a~~~~a~~Ivv~T~s--------G~tA~~is~~RP~~PIiAv 438 (527)
+...++.|.+.++++||+-|+. |.++..+.+.- +|||+.+
T Consensus 96 ~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a-~cpVlvV 143 (144)
T PRK15005 96 KDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHA-ECSVLVV 143 (144)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhC-CCCEEEe
Confidence 3445667888999999998764 55666676654 4999864
No 288
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=49.42 E-value=2.2e+02 Score=31.42 Aligned_cols=123 Identities=15% Similarity=0.172 Sum_probs=66.8
Q ss_pred HHHHhhcccccccEEEecCC-C-CHHHHHHHHHH-H--HHcC-CCCCceEEEeecChHhHhh---------HHHHHHh--
Q 036921 210 EVISSWGVQNKIDFLSLSYT-R-HAEDVRQAREY-L--SKLG-DLSQTQIFAKIENIEGLTH---------FDEILQA-- 272 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~sfV-~-s~~dv~~lr~~-l--~~~~-~~~~~~IiaKIEt~~av~n---------ldeI~~~-- 272 (527)
+.+. ..++.|+..|..|.- . ++. +...+.. + ...+ ......|++|+-+++-... ++.+.+.
T Consensus 91 ~~v~-l~l~~~V~~veasa~~~~~p~-~v~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~ 168 (444)
T TIGR02814 91 GLVD-LLLRHGVRIVEASAFMQLTPA-LVRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGR 168 (444)
T ss_pred HHHH-HHHHcCCCEEEeccccCCCcc-hhhhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCC
Confidence 4443 458899998887722 2 332 2222211 1 0000 0012479999877765543 2222222
Q ss_pred --------------CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHH------c--CCcEEE-ecchhhhhcCCCCChHh
Q 036921 273 --------------ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNM------A--GKPAVV-TRVVDSMTDNLRPTRAE 329 (527)
Q Consensus 273 --------------sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~------~--gKpvi~-Tq~LeSM~~~p~PtraE 329 (527)
+|.|.+. .|=|-+.+-......-..|++.+.+ + ..|||. ..+- .
T Consensus 169 it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~------------t 235 (444)
T TIGR02814 169 ITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIG------------T 235 (444)
T ss_pred CCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCC------------C
Confidence 5888887 7777776543333333344433222 2 356887 6642 2
Q ss_pred hhhHHHHHHhCCcEEEeC
Q 036921 330 ATDVANAVLDGSDAILLG 347 (527)
Q Consensus 330 v~Dv~nav~~g~D~imLs 347 (527)
-.+++.|...|+|+|.+.
T Consensus 236 ~~~vaAAlaLGAdgV~~G 253 (444)
T TIGR02814 236 PEAAAAAFMLGADFIVTG 253 (444)
T ss_pred HHHHHHHHHcCCcEEEec
Confidence 346788999999999873
No 289
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=49.01 E-value=2.3e+02 Score=29.86 Aligned_cols=88 Identities=15% Similarity=0.225 Sum_probs=57.3
Q ss_pred CEEEEeCCCCcCCCCchhHHHHHHHHHHHHHH----cCCcEEE-ec-----chhhhh---c----CCCCChH---hhhhH
Q 036921 274 DGIILSRGNLGIDLPPEKVFLFQKAALYKCNM----AGKPAVV-TR-----VVDSMT---D----NLRPTRA---EATDV 333 (527)
Q Consensus 274 DgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~----~gKpvi~-Tq-----~LeSM~---~----~p~Ptra---Ev~Dv 333 (527)
+-|++.++=..+.++.+.....+.+|=..|-+ .|-|+|. +- .=|+.. + .++-.|+ |+.-.
T Consensus 204 edIviDP~~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a 283 (319)
T PRK04452 204 ERIVMDPTTGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTA 283 (319)
T ss_pred HHEEEeCCcccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecchhhhhhccccccccccccccccchhccHHHHHHHH
Confidence 34678888888888888777777777666644 5668775 21 101111 0 0011123 66666
Q ss_pred HHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHH
Q 036921 334 ANAVLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 334 ~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
+..+..|+|.++|. || ++|+++++++..
T Consensus 284 ~~~~~~ga~i~vm~-------hp-~s~~~~~~~~~~ 311 (319)
T PRK04452 284 LTLLLAGADIFMMR-------HP-ESVKTLKEIIDT 311 (319)
T ss_pred HHHHHhcCcEEEEe-------CH-HHHHHHHHHHHH
Confidence 66888999999997 77 678888887754
No 290
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=48.93 E-value=1.2e+02 Score=29.56 Aligned_cols=105 Identities=17% Similarity=0.190 Sum_probs=54.4
Q ss_pred EecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHH-----------
Q 036921 225 SLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVF----------- 293 (527)
Q Consensus 225 ~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~----------- 293 (527)
.+=...+++++..+-+.|-+.|. + .+=.-.-|+.+++-+..+.+..+.+.||-|- -+..+.+.
T Consensus 12 aVir~~~~~~a~~~~~al~~gGi--~-~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGT---V~~~e~a~~a~~aGA~Fiv 85 (196)
T PF01081_consen 12 AVIRGDDPEDAVPIAEALIEGGI--R-AIEITLRTPNALEAIEALRKEFPDLLVGAGT---VLTAEQAEAAIAAGAQFIV 85 (196)
T ss_dssp EEETTSSGGGHHHHHHHHHHTT-----EEEEETTSTTHHHHHHHHHHHHTTSEEEEES-----SHHHHHHHHHHT-SEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHCCC--C-EEEEecCCccHHHHHHHHHHHCCCCeeEEEe---ccCHHHHHHHHHcCCCEEE
Confidence 33344455555555555544431 1 1112223445555555554444444454332 12222222
Q ss_pred --HHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCC
Q 036921 294 --LFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA 348 (527)
Q Consensus 294 --~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~ 348 (527)
..-..+++.|+++|.|++= --.=-+++..|...|+|.+=+=-
T Consensus 86 SP~~~~~v~~~~~~~~i~~iP-------------G~~TptEi~~A~~~G~~~vK~FP 129 (196)
T PF01081_consen 86 SPGFDPEVIEYAREYGIPYIP-------------GVMTPTEIMQALEAGADIVKLFP 129 (196)
T ss_dssp ESS--HHHHHHHHHHTSEEEE-------------EESSHHHHHHHHHTT-SEEEETT
T ss_pred CCCCCHHHHHHHHHcCCcccC-------------CcCCHHHHHHHHHCCCCEEEEec
Confidence 2346899999999999884 11223566888889999988743
No 291
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=48.91 E-value=25 Score=38.97 Aligned_cols=51 Identities=18% Similarity=0.205 Sum_probs=43.5
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHH
Q 036921 29 MTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAA 79 (527)
Q Consensus 29 ~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~ 79 (527)
+..+=+-+|.+.+..+.++.|+++|+++.=++.+||-.+...++++.||+.
T Consensus 213 rl~Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~ 263 (475)
T TIGR01303 213 RLRIGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRAL 263 (475)
T ss_pred CceehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 455555667777888999999999999999999999998888888888863
No 292
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=48.84 E-value=57 Score=32.80 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=43.0
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeec--C-hHhHhhHHHHHHh-CCEEEEeCCCCcCC
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIE--N-IEGLTHFDEILQA-ADGIILSRGNLGID 286 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIE--t-~~av~nldeI~~~-sDgImIaRgDLg~e 286 (527)
.+.+.|+|||..||.. +++.++++..... -.+..+.-|= | .++++|+.++++. ++|+-++|.=+..+
T Consensus 164 ~a~~~GADyikt~~~~---~~~~l~~~~~~~~--iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~ 234 (258)
T TIGR01949 164 LGAELGADIVKTPYTG---DIDSFRDVVKGCP--APVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHD 234 (258)
T ss_pred HHHHHCCCEEeccCCC---CHHHHHHHHHhCC--CcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCC
Confidence 4578999999999874 4555555544322 1233333342 2 4567889999887 58999987665443
No 293
>PRK08227 autoinducer 2 aldolase; Validated
Probab=48.35 E-value=49 Score=33.80 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=81.5
Q ss_pred cccccccEEEec-CCCCHHHHHHHH---HHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCC---C
Q 036921 216 GVQNKIDFLSLS-YTRHAEDVRQAR---EYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDL---P 288 (527)
Q Consensus 216 ~~~~g~d~I~~s-fV~s~~dv~~lr---~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~---~ 288 (527)
|+..|+|.|.+. |+-+..+-+.++ +...+... ..+++++....-..+.|=.++++.+=.+ | .+||+++ +
T Consensus 103 AvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~-~G~Plla~~prG~~~~~~~~~ia~aaRi--a-aELGADiVK~~ 178 (264)
T PRK08227 103 AVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLR-YGMPVMAVTAVGKDMVRDARYFSLATRI--A-AEMGAQIIKTY 178 (264)
T ss_pred HHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHH-hCCcEEEEecCCCCcCchHHHHHHHHHH--H-HHHcCCEEecC
Confidence 578899988763 344544444443 33333321 4567777333222333433333332100 0 2233222 2
Q ss_pred chhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHH
Q 036921 289 PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKIC 367 (527)
Q Consensus 289 ~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~ 367 (527)
+.. ...+++++.| ..||++ ..- ..+++.=...+++++..|+-|+...--...-..|.+.++-++.|+
T Consensus 179 y~~--~~f~~vv~a~---~vPVviaGG~-------k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IV 246 (264)
T PRK08227 179 YVE--EGFERITAGC---PVPIVIAGGK-------KLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVV 246 (264)
T ss_pred CCH--HHHHHHHHcC---CCcEEEeCCC-------CCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHH
Confidence 222 4566777755 579998 430 123455568899999999999999888888889999999999988
Q ss_pred HH
Q 036921 368 AE 369 (527)
Q Consensus 368 ~~ 369 (527)
.+
T Consensus 247 h~ 248 (264)
T PRK08227 247 HE 248 (264)
T ss_pred hC
Confidence 64
No 294
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=48.34 E-value=39 Score=35.38 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=37.8
Q ss_pred hcccccccEEEecCCCCH---------------HHHHHHHHHHHHcCCCCCceEEEe--ecChHhHhhHHHHHHhCCEEE
Q 036921 215 WGVQNKIDFLSLSYTRHA---------------EDVRQAREYLSKLGDLSQTQIFAK--IENIEGLTHFDEILQAADGII 277 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~---------------~dv~~lr~~l~~~~~~~~~~IiaK--IEt~~av~nldeI~~~sDgIm 277 (527)
.+.+.|+|.|.+. -|++ .+...++++-... .+++||+- |.|.+ ++.+.+.-+||+|
T Consensus 149 ~l~~~G~~~itvH-gRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~---~~ipVi~NGdI~s~~---da~~~l~g~dgVM 221 (318)
T TIGR00742 149 IVSGKGCQNFIVH-ARKAWLSGLSPKENREIPPLRYERVYQLKKDF---PHLTIEINGGIKNSE---QIKQHLSHVDGVM 221 (318)
T ss_pred HHHHcCCCEEEEe-CCchhhcCCCccccccCCchhHHHHHHHHHhC---CCCcEEEECCcCCHH---HHHHHHhCCCEEE
Confidence 5568999998765 5653 1334444332221 24666652 33332 3444555689999
Q ss_pred EeCCCCc
Q 036921 278 LSRGNLG 284 (527)
Q Consensus 278 IaRgDLg 284 (527)
||||=|+
T Consensus 222 igRgal~ 228 (318)
T TIGR00742 222 VGREAYE 228 (318)
T ss_pred ECHHHHh
Confidence 9999887
No 295
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=48.20 E-value=83 Score=32.28 Aligned_cols=85 Identities=12% Similarity=0.222 Sum_probs=55.0
Q ss_pred cccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHH
Q 036921 216 GVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLF 295 (527)
Q Consensus 216 ~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~ 295 (527)
++..|+|.+- =|+++ +...+ ++... .+..+..-.-...+++-++..+..-+++.||+| ||-+ +.+...
T Consensus 53 a~~~GaDL~H-iFCe~--~Aa~v---IKsYs--PdLIVHP~l~~~~av~~i~k~L~RlhavVIGPG-LGRd---p~~~k~ 120 (306)
T KOG3974|consen 53 ALRVGADLSH-IFCEP--EAAVV---IKSYS--PDLIVHPVLDQENAVDIIEKLLQRLHAVVIGPG-LGRD---PAILKE 120 (306)
T ss_pred HHHhccceee-eeech--hHHHH---HhhcC--CceeecccccCCchHhHHHHHHhheeEEEECCC-CCCC---HHHHHH
Confidence 4677888432 23333 33322 22222 444444444445688888888888999999987 5542 345566
Q ss_pred HHHHHHHHHHcCCcEEE
Q 036921 296 QKAALYKCNMAGKPAVV 312 (527)
Q Consensus 296 qk~Ii~~c~~~gKpvi~ 312 (527)
.+.|++.|+..++|+.+
T Consensus 121 i~~iley~~~~dvP~VI 137 (306)
T KOG3974|consen 121 IAKILEYLRGKDVPLVI 137 (306)
T ss_pred HHHHHHHHhcCCCcEEE
Confidence 67899999999999875
No 296
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=48.18 E-value=2.1e+02 Score=29.38 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=64.0
Q ss_pred HHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhcc--
Q 036921 298 AALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVF-- 374 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~-- 374 (527)
-+...|+..|.++.+ .- .++.+ ..-..+ .-..|++.++...+. | .++.+...+++++.++..
T Consensus 72 alA~~a~~~G~~~~ivvp------~~~~~--~~~~~~--~~~~Ga~v~~v~~~~----~-~~~~~~~~~~~~~~~~~~~~ 136 (311)
T TIGR01275 72 ATALAAKKLGLDAVLVLR------EKEEL--NGNLLL--DKLMGAETRVYSAEE----Y-FEIMKYAEELAEELEKEGRK 136 (311)
T ss_pred HHHHHHHHhCCceEEEec------CCccC--CCCHHH--HHHcCCEEEEECchh----h-hhhHHHHHHHHHHHHhcCCC
Confidence 556789999999887 21 01101 111111 235799988876422 1 122334444444433221
Q ss_pred chhhhhhhhhcccCCCCChHHHHHHHHHHHHHhc----CCcEEEEECCCcHHHHHHHh----hCCCCCEEEEe
Q 036921 375 NQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKV----KASVIICFTSSGRAARLIAK----YRPTMPVLSVV 439 (527)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~----~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~ 439 (527)
.|-..++ ...+ .-.+.....+.++.+++ ..++||+..-+|.|+.-+++ ++|.++|+++-
T Consensus 137 ~~~~p~~-----~~~~-~~~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~ 203 (311)
T TIGR01275 137 PYVIPVG-----GSNS-LGTLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVA 203 (311)
T ss_pred eEEECCC-----CCcH-HHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 1100000 0001 11222223355666665 47899999999999776655 48999999873
No 297
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=47.86 E-value=1.7e+02 Score=29.80 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=55.8
Q ss_pred hhcccccccEEEecCC------CCHHHHHHHHH-HHHHcCCCCCceEEEeec---ChHhHhhHHHHHHh-CCEEEEeCCC
Q 036921 214 SWGVQNKIDFLSLSYT------RHAEDVRQARE-YLSKLGDLSQTQIFAKIE---NIEGLTHFDEILQA-ADGIILSRGN 282 (527)
Q Consensus 214 ~~~~~~g~d~I~~sfV------~s~~dv~~lr~-~l~~~~~~~~~~IiaKIE---t~~av~nldeI~~~-sDgImIaRgD 282 (527)
++.++.|+++|++.-- =|.++=.++-+ .....+ .++.|++-+= +.++++.....-+. +|++|+.+-.
T Consensus 29 ~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~--~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 29 DYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN--GRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPY 106 (292)
T ss_pred HHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC--CCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 4778999999986422 23333333333 334333 5678888884 34444444443333 3999997766
Q ss_pred CcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 283 LGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 283 Lg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
+. ..+.+.+...-+.|+++ .+.|+++
T Consensus 107 ~~-~~~~~~i~~~~~~ia~~---~~~pv~l 132 (292)
T PRK03170 107 YN-KPTQEGLYQHFKAIAEA---TDLPIIL 132 (292)
T ss_pred CC-CCCHHHHHHHHHHHHhc---CCCCEEE
Confidence 53 23445666666666554 4799997
No 298
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=47.78 E-value=1.9e+02 Score=29.60 Aligned_cols=91 Identities=19% Similarity=0.238 Sum_probs=57.6
Q ss_pred hhcccccccEEEec------CCCCHHHHHHHHHH-HHHcCCCCCceEEEeecChHhHhhHHHHHHh-----CCEEEEeCC
Q 036921 214 SWGVQNKIDFLSLS------YTRHAEDVRQAREY-LSKLGDLSQTQIFAKIENIEGLTHFDEILQA-----ADGIILSRG 281 (527)
Q Consensus 214 ~~~~~~g~d~I~~s------fV~s~~dv~~lr~~-l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-----sDgImIaRg 281 (527)
++.++.|+|+|++. +--|.++-.++.+. .+..+ .++.||+-+- . +.++.-+.++. +|++|+.+-
T Consensus 28 ~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~--~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~~pP 103 (289)
T cd00951 28 EWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA--GRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILLLPP 103 (289)
T ss_pred HHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC--CCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEECCC
Confidence 47789999998775 34455665555443 44434 5788999884 2 44444344443 399999776
Q ss_pred CCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 282 NLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 282 DLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
-.. ..+.+.+...-+.+.+ +.+.|+++
T Consensus 104 ~y~-~~~~~~i~~~f~~v~~---~~~~pi~l 130 (289)
T cd00951 104 YLT-EAPQEGLYAHVEAVCK---STDLGVIV 130 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHh---cCCCCEEE
Confidence 543 2344566666666654 45899998
No 299
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=47.74 E-value=2.1e+02 Score=28.42 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=78.0
Q ss_pred EEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHH------
Q 036921 223 FLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQ------ 296 (527)
Q Consensus 223 ~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~q------ 296 (527)
.|.+=-..+.++...+.+.|-+.|. ..|=.-.-|+.+.+-|.++.+....++||-|= -+..+.+..+.
T Consensus 15 vI~Vlr~~~~e~a~~~a~Ali~gGi---~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGT---VL~~~q~~~a~~aGa~f 88 (211)
T COG0800 15 VVPVIRGDDVEEALPLAKALIEGGI---PAIEITLRTPAALEAIRALAKEFPEALIGAGT---VLNPEQARQAIAAGAQF 88 (211)
T ss_pred eeEEEEeCCHHHHHHHHHHHHHcCC---CeEEEecCCCCHHHHHHHHHHhCcccEEcccc---ccCHHHHHHHHHcCCCE
Confidence 3555567888998888888877662 24556678999999999999988888888663 34555555555
Q ss_pred -------HHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEe
Q 036921 297 -------KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (527)
Q Consensus 297 -------k~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imL 346 (527)
.++++.|+.+|.|++ |--+-.+++..|...|++++=+
T Consensus 89 iVsP~~~~ev~~~a~~~~ip~~-------------PG~~TptEi~~Ale~G~~~lK~ 132 (211)
T COG0800 89 IVSPGLNPEVAKAANRYGIPYI-------------PGVATPTEIMAALELGASALKF 132 (211)
T ss_pred EECCCCCHHHHHHHHhCCCccc-------------CCCCCHHHHHHHHHcChhheee
Confidence 589999999999987 3333445668888899988654
No 300
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=47.69 E-value=1.3e+02 Score=26.41 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=39.5
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHH-HH---------HHHHHHHHHHHHHcCCc
Q 036921 29 MTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTE-YH---------QETLENLKAAVKTTKKL 86 (527)
Q Consensus 29 ~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e-~~---------~~~i~~ir~~~~~~~~~ 86 (527)
..++..+..+...+.+.++.|.++|++.+++++...+.+ .+ .++++.++.+.+ .|.+
T Consensus 76 ~~~i~~~t~~~~~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~g~~ 142 (166)
T PF04055_consen 76 GIRISINTNGTLLDEELLDELKKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKE-AGIP 142 (166)
T ss_dssp TEEEEEEEESTTHCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHH-TTSE
T ss_pred ccceeeeccccchhHHHHHHHHhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHH-cCCC
Confidence 445544444444449999999999999999999999998 32 344566666544 4544
No 301
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=47.58 E-value=2.1e+02 Score=29.18 Aligned_cols=93 Identities=15% Similarity=0.183 Sum_probs=57.1
Q ss_pred hhccc-ccccEEEec------CCCCHHHHHHHHH-HHHHcCCCCCceEEEeec---ChHhHhhHHHHHHh-CCEEEEeCC
Q 036921 214 SWGVQ-NKIDFLSLS------YTRHAEDVRQARE-YLSKLGDLSQTQIFAKIE---NIEGLTHFDEILQA-ADGIILSRG 281 (527)
Q Consensus 214 ~~~~~-~g~d~I~~s------fV~s~~dv~~lr~-~l~~~~~~~~~~IiaKIE---t~~av~nldeI~~~-sDgImIaRg 281 (527)
++.++ .|+++|++. +.=|.++-.++-+ .++..+ .++.||+.+- +.++++.....-+. +||+|+.+.
T Consensus 31 ~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~--~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P 108 (293)
T PRK04147 31 RFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK--GKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTP 108 (293)
T ss_pred HHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC--CCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 47788 999998774 3334445444444 344444 5789999994 45555555544443 499999876
Q ss_pred CCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 282 NLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 282 DLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
..- ..+.+.+...-+.+ |.+.+.|+++
T Consensus 109 ~y~-~~~~~~l~~~f~~v---a~a~~lPv~i 135 (293)
T PRK04147 109 FYY-PFSFEEICDYYREI---IDSADNPMIV 135 (293)
T ss_pred cCC-CCCHHHHHHHHHHH---HHhCCCCEEE
Confidence 542 22334555555555 4456789998
No 302
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=47.55 E-value=54 Score=33.77 Aligned_cols=55 Identities=15% Similarity=0.124 Sum_probs=46.9
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCc
Q 036921 31 KIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKL 86 (527)
Q Consensus 31 kIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~ 86 (527)
.+..=+ ..+.+.+.+++.+++|.+.+-|.-||.+.++..+.-..+++.++.+|.+
T Consensus 76 pv~lHl-DH~~~~e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~ 130 (281)
T PRK06806 76 PVAVHF-DHGMTFEKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGAT 130 (281)
T ss_pred CEEEEC-CCCCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCe
Confidence 344444 4457899999999999999999999999999999999999999988754
No 303
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=47.52 E-value=1.9e+02 Score=29.43 Aligned_cols=202 Identities=17% Similarity=0.105 Sum_probs=0.0
Q ss_pred HhhHHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHH-HcCCcEEE--ecchhhhhcCCCCChHhh-hhHHHHH
Q 036921 263 LTHFDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCN-MAGKPAVV--TRVVDSMTDNLRPTRAEA-TDVANAV 337 (527)
Q Consensus 263 v~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~-~~gKpvi~--Tq~LeSM~~~p~PtraEv-~Dv~nav 337 (527)
++.++.+-.. .|.|-|.-|-.| ....---.+....+ +.|+|++. |-. .-+|.++ +++..+-
T Consensus 18 ~~~~~~l~~~~pd~isvT~~~~~------~~~~~t~~~a~~l~~~~g~~~i~Hlt~r--------~~n~~~l~~~L~~~~ 83 (272)
T TIGR00676 18 WETVDRLSPLDPDFVSVTYGAGG------STRDRTVRIVRRIKKETGIPTVPHLTCI--------GATREEIREILREYR 83 (272)
T ss_pred HHHHHHHhcCCCCEEEeccCCCC------CcHHHHHHHHHHHHHhcCCCeeEEeeec--------CCCHHHHHHHHHHHH
Q ss_pred HhCCcEEE-eCCccc-------cCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC
Q 036921 338 LDGSDAIL-LGAETL-------RGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK 409 (527)
Q Consensus 338 ~~g~D~im-Ls~Eta-------~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~ 409 (527)
..|++-++ |+|+.. .|.|+ .+++.++-|-+.-+ .|.--....|.........-...-.+..+.+
T Consensus 84 ~~Gi~nvL~l~GD~~~~~~~~~~~~f~-~a~~Li~~i~~~~~-------~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~ 155 (272)
T TIGR00676 84 ELGIRHILALRGDPPKGEGTPTPGGFN-YASELVEFIRNEFG-------DFDIGVAAYPEKHPEAPNLEEDIENLKRKVD 155 (272)
T ss_pred HCCCCEEEEeCCCCCCCCCCCCCCCCC-CHHHHHHHHHHhcC-------CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHH
Q ss_pred CcEEEEECCCcHHHHHHHhhCCCC-------CEEEEeeccccccccccccCcHHHHHhhcccccc-EEEecCCCCCCCCC
Q 036921 410 ASVIICFTSSGRAARLIAKYRPTM-------PVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGL-FPMLADPRHPAEST 481 (527)
Q Consensus 410 a~~Ivv~T~sG~tA~~is~~RP~~-------PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV-~P~l~~~~~~~~~~ 481 (527)
|-+=+++|.=...+..+.++.=.| ||++...| ..+.+.+.++.-.-|| +|--+........
T Consensus 156 aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~p----------~~s~k~~~~~~~~~Gv~vP~~~~~~l~~~~- 224 (272)
T TIGR00676 156 AGADYAITQLFFDNDDYYRFVDRCRAAGIDVPIIPGIMP----------ITNFKQLLRFAERCGAEIPAWLVKRLEKYD- 224 (272)
T ss_pred cCCCeEeeccccCHHHHHHHHHHHHHcCCCCCEecccCC----------cCCHHHHHHHHhccCCCCCHHHHHHHHhcC-
Q ss_pred ccCHHHHHHHHHHHHHH
Q 036921 482 NATNESVLKVALDHGKA 498 (527)
Q Consensus 482 ~~~~e~~i~~a~~~a~e 498 (527)
++.++.-+.+++++.+
T Consensus 225 -~~~~~~~~~gi~~~~~ 240 (272)
T TIGR00676 225 -DDPEEVRAVGIEYATD 240 (272)
T ss_pred -CCHHHHHHHHHHHHHH
No 304
>PLN02417 dihydrodipicolinate synthase
Probab=47.45 E-value=1.9e+02 Score=29.47 Aligned_cols=91 Identities=10% Similarity=0.127 Sum_probs=56.8
Q ss_pred hhcccccccEEEecC------CCCHHHHHHHHH-HHHHcCCCCCceEEEeec---ChHhHhhHHHHHHh-CCEEEEeCCC
Q 036921 214 SWGVQNKIDFLSLSY------TRHAEDVRQARE-YLSKLGDLSQTQIFAKIE---NIEGLTHFDEILQA-ADGIILSRGN 282 (527)
Q Consensus 214 ~~~~~~g~d~I~~sf------V~s~~dv~~lr~-~l~~~~~~~~~~IiaKIE---t~~av~nldeI~~~-sDgImIaRgD 282 (527)
+|.++.|+++|++.= .-|.++=.++-+ ..+..+ .+++|++-+= +.++++....--+. +|++|+.+-.
T Consensus 29 ~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~--~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~ 106 (280)
T PLN02417 29 NMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFG--GKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 106 (280)
T ss_pred HHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhC--CCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 477899999998742 234444444433 344444 5688998884 45555554444433 4999998876
Q ss_pred CcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 283 LGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 283 Lg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
.. ..+-+.+...-+.|.++ . |+++
T Consensus 107 y~-~~~~~~i~~~f~~va~~----~-pi~l 130 (280)
T PLN02417 107 YG-KTSQEGLIKHFETVLDM----G-PTII 130 (280)
T ss_pred cC-CCCHHHHHHHHHHHHhh----C-CEEE
Confidence 54 34456666666666663 3 8886
No 305
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=47.28 E-value=2.1e+02 Score=28.83 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=58.2
Q ss_pred HHHHhhcccccccEEEecC------CCCHHHHHHHHHHH-HHcCCCCCceEEEeecC---hHhHhhHHHHHHh-CCEEEE
Q 036921 210 EVISSWGVQNKIDFLSLSY------TRHAEDVRQAREYL-SKLGDLSQTQIFAKIEN---IEGLTHFDEILQA-ADGIIL 278 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~sf------V~s~~dv~~lr~~l-~~~~~~~~~~IiaKIEt---~~av~nldeI~~~-sDgImI 278 (527)
+.+ ++.++.|+++|++.- --|.++=+++-+.. +..+ .++.|++.+=+ .++++.....-+. +|++|+
T Consensus 22 ~~i-~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~--~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v 98 (281)
T cd00408 22 RLV-EFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVA--GRVPVIAGVGANSTREAIELARHAEEAGADGVLV 98 (281)
T ss_pred HHH-HHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhC--CCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEE
Confidence 344 477889999988652 23445555554433 3334 57889998843 2233333333322 499999
Q ss_pred eCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 279 SRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 279 aRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
.+-.+.. .+-+.+...-+.|+++ .+.|+++
T Consensus 99 ~pP~y~~-~~~~~~~~~~~~ia~~---~~~pi~i 128 (281)
T cd00408 99 VPPYYNK-PSQEGIVAHFKAVADA---SDLPVIL 128 (281)
T ss_pred CCCcCCC-CCHHHHHHHHHHHHhc---CCCCEEE
Confidence 8766544 4456666666666554 6899987
No 306
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=47.19 E-value=2e+02 Score=28.11 Aligned_cols=109 Identities=11% Similarity=0.133 Sum_probs=65.3
Q ss_pred CHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCC
Q 036921 205 SDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNL 283 (527)
Q Consensus 205 t~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDL 283 (527)
+..+...+.+.+++.|+..+=+.+ +++...+.++.+..+.+ .. ++.=.=|.--.++++..+++ +|+++.+
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~~~~--~~--~~iGaGTV~~~~~~~~a~~aGA~fivsp---- 90 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPL-NSPDPFDSIAALVKALG--DR--ALIGAGTVLSPEQVDRLADAGGRLIVTP---- 90 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-CCccHHHHHHHHHHHcC--CC--cEEeEEecCCHHHHHHHHHcCCCEEECC----
Confidence 444444444466777788777774 66666666666554443 11 22112222233344555544 3666653
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEe
Q 036921 284 GIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (527)
Q Consensus 284 g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imL 346 (527)
..-..+++.|+..|.|++. +. |. +++..|...|+|.+.+
T Consensus 91 ----------~~~~~v~~~~~~~~~~~~~G~~-----------t~---~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 91 ----------NTDPEVIRRAVALGMVVMPGVA-----------TP---TEAFAALRAGAQALKL 130 (206)
T ss_pred ----------CCCHHHHHHHHHCCCcEEcccC-----------CH---HHHHHHHHcCCCEEEE
Confidence 2335678899999999997 65 22 4457788889999987
No 307
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=47.13 E-value=1.4e+02 Score=30.14 Aligned_cols=87 Identities=22% Similarity=0.222 Sum_probs=55.2
Q ss_pred HHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhC--CEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecc
Q 036921 238 AREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAA--DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRV 315 (527)
Q Consensus 238 lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~s--DgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~ 315 (527)
+|+.|.... .-...+..+-++. +-||+..+ |.++|. +|=+.-.+..+ ..++.+|+..|.++++
T Consensus 3 lk~~l~~g~--~~~G~~~~~~sp~----~~e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~~~a~~~~g~~~~V--- 67 (249)
T TIGR03239 3 FRQDLLARE--TLIGCWSALGNPI----TTEVLGLAGFDWLLLD-----GEHAPNDVLTF-IPQLMALKGSASAPVV--- 67 (249)
T ss_pred HHHHHHcCC--ceEEEEEcCCCcH----HHHHHHhcCCCEEEEe-----cccCCCCHHHH-HHHHHHHhhcCCCcEE---
Confidence 455554422 2234556665554 44666655 999995 34444444444 4778889999999887
Q ss_pred hhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 316 VDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 316 LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
++...+-..+..++..|+++||+.
T Consensus 68 --------Rvp~~~~~~i~r~LD~Ga~gIivP 91 (249)
T TIGR03239 68 --------RPPWNEPVIIKRLLDIGFYNFLIP 91 (249)
T ss_pred --------ECCCCCHHHHHHHhcCCCCEEEec
Confidence 222234456677888899999996
No 308
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=46.35 E-value=1e+02 Score=30.34 Aligned_cols=103 Identities=17% Similarity=0.150 Sum_probs=63.3
Q ss_pred CCChHhhhhHHHHHHhCCcEEEeCCccc---cCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHH
Q 036921 324 RPTRAEATDVANAVLDGSDAILLGAETL---RGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASS 400 (527)
Q Consensus 324 ~PtraEv~Dv~nav~~g~D~imLs~Eta---~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ 400 (527)
.|+...+.++..|+.+|+|.+-+----. .|.| -+..+.|..|++.+.. ..-+..+ . . ...+. +.+. .
T Consensus 67 ~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~-~~v~~ei~~i~~~~~g-~~lKvIl----E-~-~~L~~-~ei~-~ 136 (211)
T TIGR00126 67 STTDVKLYETKEAIKYGADEVDMVINIGALKDGNE-EVVYDDIRAVVEACAG-VLLKVII----E-T-GLLTD-EEIR-K 136 (211)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcH-HHHHHHHHHHHHHcCC-CeEEEEE----e-c-CCCCH-HHHH-H
Confidence 5677888899999999999987754433 3333 5666777777765531 1111111 1 1 11222 4455 8
Q ss_pred HHHHHHhcCCcEEEEECCCcHH--------HHHHHhh-CCCCCEEEE
Q 036921 401 AVRAAIKVKASVIICFTSSGRA--------ARLIAKY-RPTMPVLSV 438 (527)
Q Consensus 401 av~~a~~~~a~~Ivv~T~sG~t--------A~~is~~-RP~~PIiAv 438 (527)
+++++.+.+|+ ++=|.||.. ++.+.+. +.++||-|-
T Consensus 137 a~~ia~eaGAD--fvKTsTGf~~~gat~~dv~~m~~~v~~~v~IKaa 181 (211)
T TIGR00126 137 ACEICIDAGAD--FVKTSTGFGAGGATVEDVRLMRNTVGDTIGVKAS 181 (211)
T ss_pred HHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHHhccCCeEEEe
Confidence 88999999999 466777753 3445444 346777754
No 309
>PLN02826 dihydroorotate dehydrogenase
Probab=46.18 E-value=4.3e+02 Score=28.80 Aligned_cols=148 Identities=16% Similarity=0.134 Sum_probs=76.9
Q ss_pred hhHHHHHhhcccccccEEEecC----------CCCHHHHHHHHHHHHHcC----C--CCCceEEEeecChHhHhhHHHHH
Q 036921 207 KDKEVISSWGVQNKIDFLSLSY----------TRHAEDVRQAREYLSKLG----D--LSQTQIFAKIENIEGLTHFDEIL 270 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~sf----------V~s~~dv~~lr~~l~~~~----~--~~~~~IiaKIEt~~av~nldeI~ 270 (527)
.|.....+. +...+|++-+.. -+..+.+.++-+.+.+.. . ..+++|+.||=--..-+++++|+
T Consensus 204 ~Dy~~~~~~-~~~~aDylelNiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia 282 (409)
T PLN02826 204 ADYVQGVRA-LSQYADYLVINVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIA 282 (409)
T ss_pred HHHHHHHHH-HhhhCCEEEEECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHH
Confidence 444444322 334589887642 233444555544443210 0 03578999993222223455555
Q ss_pred Hh-----CCEEEEe-----C-CCCc-----CCC-Cc---hhHHHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCCh
Q 036921 271 QA-----ADGIILS-----R-GNLG-----IDL-PP---EKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTR 327 (527)
Q Consensus 271 ~~-----sDgImIa-----R-gDLg-----~e~-~~---~~v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~Ptr 327 (527)
+. .|||++. | +|+- .+. |+ .-.+...+.+-...++. ..|+|- ..+.
T Consensus 283 ~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~----------- 351 (409)
T PLN02826 283 AVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGCGGVS----------- 351 (409)
T ss_pred HHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEECCCC-----------
Confidence 43 3999874 3 2231 111 11 12233344444444444 468877 7653
Q ss_pred HhhhhHHHHHHhCCcEEEeCCcccc-CCChHHHHHHHHHHHHHHhhc
Q 036921 328 AEATDVANAVLDGSDAILLGAETLR-GLYPVETISIVGKICAEAEKV 373 (527)
Q Consensus 328 aEv~Dv~nav~~g~D~imLs~Eta~-G~yP~e~V~~~~~i~~~aE~~ 373 (527)
...|++.++..||++|.+-.--.. | | ..+.+|.++.+++
T Consensus 352 -sg~Da~e~i~AGAs~VQv~Ta~~~~G--p----~~i~~I~~eL~~~ 391 (409)
T PLN02826 352 -SGEDAYKKIRAGASLVQLYTAFAYEG--P----ALIPRIKAELAAC 391 (409)
T ss_pred -CHHHHHHHHHhCCCeeeecHHHHhcC--H----HHHHHHHHHHHHH
Confidence 357889999999999999632111 2 3 3556666665543
No 310
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=46.12 E-value=1.4e+02 Score=30.33 Aligned_cols=124 Identities=17% Similarity=0.203 Sum_probs=71.7
Q ss_pred hhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCC-----CCCceEEEeecChHhHhhHHHHHHh-CCEEEEeC
Q 036921 207 KDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGD-----LSQTQIFAKIENIEGLTHFDEILQA-ADGIILSR 280 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~-----~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaR 280 (527)
.|...+.+.+.+.|+..+...- .+.++...+.++...... .-|+.- ..-++.+.++.+.+.+.. .-.+-|
T Consensus 17 ~d~~~vi~~a~~~gv~~~~~~g-~~~~~~~~~~~la~~y~~v~~~~G~HP~~-~~~~~~~~~~~l~~~~~~~~~vvaI-- 92 (256)
T COG0084 17 EDRDEVIARAREAGVKKMVVVG-TDLEDFKRALELAEKYPNVYAAVGVHPLD-ADEHSEEDLEELEQLAEHHPKVVAI-- 92 (256)
T ss_pred CCHHHHHHHHHHcCCcEEEEee-cCHHHHHHHHHHHHhCCCeEEEEeeCCCc-cccccHHHHHHHHHHHhcCCCeEEE--
Confidence 3455554567889999887774 556666666665543310 022222 223445555566666654 345555
Q ss_pred CCCcCCCCchhH--HHHHH----HHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHh---CCcEEEeC
Q 036921 281 GNLGIDLPPEKV--FLFQK----AALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLD---GSDAILLG 347 (527)
Q Consensus 281 gDLg~e~~~~~v--~~~qk----~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~---g~D~imLs 347 (527)
|.-|+++-+..- ...|+ +-++.|++.+||+++ +. .--.|+++.+.. ...+||-+
T Consensus 93 GEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R-------------~A~~d~~~iL~~~~~~~~gi~Hc 156 (256)
T COG0084 93 GEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTR-------------DAHEDTLEILKEEGAPVGGVLHC 156 (256)
T ss_pred EecccCccccccccHHHHHHHHHHHHHHHHHcCCCEEEEcc-------------ccHHHHHHHHHhcCCCCCEEEEc
Confidence 666666654332 23354 668899999999998 63 233455555544 25566665
No 311
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=45.83 E-value=2.5e+02 Score=26.46 Aligned_cols=118 Identities=17% Similarity=0.120 Sum_probs=62.8
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHH-hCCEEEEeCCCCc-------CC
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQ-AADGIILSRGNLG-------ID 286 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~-~sDgImIaRgDLg-------~e 286 (527)
.+.+.|+|+|-++.= .-+...++..+. ....|-+-+-|.+- +.+..+ -+|.+++++=-=+ ..
T Consensus 68 la~~~g~~GvHl~~~--~~~~~~~r~~~~-----~~~~ig~s~h~~~e---~~~a~~~g~dyi~~~~v~~t~~k~~~~~~ 137 (196)
T TIGR00693 68 LALALGADGVHLGQD--DLPASEARALLG-----PDKIIGVSTHNLEE---LAEAEAEGADYIGFGPIFPTPTKKDPAPP 137 (196)
T ss_pred HHHHcCCCEEecCcc--cCCHHHHHHhcC-----CCCEEEEeCCCHHH---HHHHhHcCCCEEEECCccCCCCCCCCCCC
Confidence 456788888888732 123445555442 22344443333322 222222 3589988653111 11
Q ss_pred CCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHH
Q 036921 287 LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETIS 361 (527)
Q Consensus 287 ~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~ 361 (527)
.+++.+ +.+.+.+ .++|++. ..+ +. .++..+...|+|++.+.+.-..-..|.++++
T Consensus 138 ~g~~~l----~~~~~~~--~~~pv~a~GGI----------~~---~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~ 194 (196)
T TIGR00693 138 AGVELL----REIAATS--IDIPIVAIGGI----------TL---ENAAEVLAAGADGVAVVSAIMQAADPKAAAK 194 (196)
T ss_pred CCHHHH----HHHHHhc--CCCCEEEECCc----------CH---HHHHHHHHcCCCEEEEhHHhhCCCCHHHHHH
Confidence 233332 2222222 2589887 553 22 3455566679999999877666667877765
No 312
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=45.68 E-value=3e+02 Score=28.26 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=54.5
Q ss_pred HHHHHh-CCEEEEeC-CCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHH-HHHHhCCc
Q 036921 267 DEILQA-ADGIILSR-GNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVA-NAVLDGSD 342 (527)
Q Consensus 267 deI~~~-sDgImIaR-gDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~-nav~~g~D 342 (527)
+..++. .|||++.- --=+..+..++-..+.+.+++.++ ...|++. +. ..+-.|.-..+ .|-..|+|
T Consensus 28 ~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~-g~~pvi~gv~---------~~~t~~ai~~a~~A~~~Gad 97 (294)
T TIGR02313 28 EFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA-GRIPFAPGTG---------ALNHDETLELTKFAEEAGAD 97 (294)
T ss_pred HHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCcEEEECC---------cchHHHHHHHHHHHHHcCCC
Confidence 444433 48999841 111223444554455555555442 3478886 43 23334443333 35666999
Q ss_pred EEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 343 AILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 343 ~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
++|+..=--...-+-+.+.....|+..+
T Consensus 98 ~v~v~pP~y~~~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 98 AAMVIVPYYNKPNQEALYDHFAEVADAV 125 (294)
T ss_pred EEEEcCccCCCCCHHHHHHHHHHHHHhc
Confidence 9999865544434578888899998876
No 313
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=45.68 E-value=2.9e+02 Score=28.28 Aligned_cols=128 Identities=13% Similarity=0.159 Sum_probs=73.6
Q ss_pred CCHhhHHHHHhhcccccccEEEecCC-------------CCHHHHHHHHHHHHHcCCCCCceEEEeec------Ch-HhH
Q 036921 204 LSDKDKEVISSWGVQNKIDFLSLSYT-------------RHAEDVRQAREYLSKLGDLSQTQIFAKIE------NI-EGL 263 (527)
Q Consensus 204 lt~~D~~di~~~~~~~g~d~I~~sfV-------------~s~~dv~~lr~~l~~~~~~~~~~IiaKIE------t~-~av 263 (527)
+|-+|..-.+ .+-+.|+|.|....- =|.+++...-+.+.+.- ..+.|++=++ +. +++
T Consensus 20 ~tayD~~sAr-l~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~--~~p~vvaD~pfg~y~~~~~~av 96 (264)
T PRK00311 20 LTAYDYPFAK-LFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGA--PRALVVADMPFGSYQASPEQAL 96 (264)
T ss_pred EeCCCHHHHH-HHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC--CCCcEEEeCCCCCccCCHHHHH
Confidence 3667777775 667889999875411 02222222222232221 3456888775 22 468
Q ss_pred hhHHHHHHh--CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEE----E-ecchhh---hhcCCCCChH---h-
Q 036921 264 THFDEILQA--ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAV----V-TRVVDS---MTDNLRPTRA---E- 329 (527)
Q Consensus 264 ~nldeI~~~--sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi----~-Tq~LeS---M~~~p~Ptra---E- 329 (527)
+|.-.+++. ++||-+--| ..+...|+++.++|.||+ + -|--.. +....+ |.+ |
T Consensus 97 ~~a~r~~~~aGa~aVkiEdg------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~gr-t~~~a~~~ 163 (264)
T PRK00311 97 RNAGRLMKEAGAHAVKLEGG------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQGR-DEEAAEKL 163 (264)
T ss_pred HHHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeeeecC-CHHHHHHH
Confidence 888888884 488888533 245677888889999996 2 221111 111111 222 2
Q ss_pred hhhHHHHHHhCCcEEEeC
Q 036921 330 ATDVANAVLDGSDAILLG 347 (527)
Q Consensus 330 v~Dv~nav~~g~D~imLs 347 (527)
+.+.-.....|+|+++|-
T Consensus 164 i~ra~a~~eAGA~~i~lE 181 (264)
T PRK00311 164 LEDAKALEEAGAFALVLE 181 (264)
T ss_pred HHHHHHHHHCCCCEEEEc
Confidence 244444667899999985
No 314
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=45.32 E-value=1e+02 Score=33.21 Aligned_cols=90 Identities=22% Similarity=0.313 Sum_probs=52.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCceEEEe-ecChHhHhhHHHHHHh-CCEEEEe----CCCCcCCC-CchhHHHHHHHHHHH
Q 036921 230 RHAEDVRQAREYLSKLGDLSQTQIFAK-IENIEGLTHFDEILQA-ADGIILS----RGNLGIDL-PPEKVFLFQKAALYK 302 (527)
Q Consensus 230 ~s~~dv~~lr~~l~~~~~~~~~~IiaK-IEt~~av~nldeI~~~-sDgImIa----RgDLg~e~-~~~~v~~~qk~Ii~~ 302 (527)
-|-+++..+++.. +.+|+.| |-+.+ .....++. +|||+|. |. +-... +++-++.+++.
T Consensus 240 ~tW~~i~~lr~~~-------~~pvivKgV~~~~---dA~~a~~~G~d~I~vsnhGGr~-~d~~~~t~~~L~ei~~~---- 304 (383)
T cd03332 240 LTWEDLAFLREWT-------DLPIVLKGILHPD---DARRAVEAGVDGVVVSNHGGRQ-VDGSIAALDALPEIVEA---- 304 (383)
T ss_pred CCHHHHHHHHHhc-------CCCEEEecCCCHH---HHHHHHHCCCCEEEEcCCCCcC-CCCCcCHHHHHHHHHHH----
Confidence 3557888887643 3578888 53322 22222222 4999984 32 11111 12333333322
Q ss_pred HHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 303 CNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 303 c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+. -..|++. ..+ ..-.||+.|+..|||++++.
T Consensus 305 ~~-~~~~vi~dGGI------------r~G~Dv~KALaLGA~~v~iG 337 (383)
T cd03332 305 VG-DRLTVLFDSGV------------RTGADIMKALALGAKAVLIG 337 (383)
T ss_pred hc-CCCeEEEeCCc------------CcHHHHHHHHHcCCCEEEEc
Confidence 21 2489998 664 24589999999999999985
No 315
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=45.28 E-value=3.4e+02 Score=28.72 Aligned_cols=118 Identities=16% Similarity=0.163 Sum_probs=70.4
Q ss_pred HHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 297 KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
.-+...|+..|.|+.+. .|..+.-..+...-..|++.++. + ...-++.+...+++++-. ..|
T Consensus 61 ~alA~~a~~~G~~~~iv----------~p~~~~~~k~~~~~~~GA~V~~~-~-----~~~~~a~~~a~~~~~~~~--~~~ 122 (380)
T TIGR01127 61 QGVAYAAKKFGIKAVIV----------MPESAPPSKVKATKSYGAEVILH-G-----DDYDEAYAFATSLAEEEG--RVF 122 (380)
T ss_pred HHHHHHHHHcCCCEEEE----------EcCCCcHHHHHHHHHCCCEEEEE-C-----CCHHHHHHHHHHHHHhcC--CEe
Confidence 45677899999998861 12222233445555679987764 2 234577777777655421 222
Q ss_pred hhhhhhhhcccCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 377 DLYFKKTVKCVGEPMTHLESIASSAVRAAIKV-KASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
-..|.+ + .....-...+.++..++ +.+.||+..-+|.+..-+++ +.|...|+++-+
T Consensus 123 ~~~~~~-------~-~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~ 183 (380)
T TIGR01127 123 VHPFDD-------E-FVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEA 183 (380)
T ss_pred cCCCCC-------h-hhhhhhHHHHHHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 111211 0 01122233345666665 48999999999998765554 479999999854
No 316
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=45.22 E-value=3.2e+02 Score=27.11 Aligned_cols=134 Identities=13% Similarity=0.185 Sum_probs=69.7
Q ss_pred hhHHHHHhhcccccccEEEecC--CCCHHHHHHHHHHHHHcCCCCCceE-------EEeecCh-HhHhhHHHHHH---h-
Q 036921 207 KDKEVISSWGVQNKIDFLSLSY--TRHAEDVRQAREYLSKLGDLSQTQI-------FAKIENI-EGLTHFDEILQ---A- 272 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~sf--V~s~~dv~~lr~~l~~~~~~~~~~I-------iaKIEt~-~av~nldeI~~---~- 272 (527)
.+.++++ ..++.|++.+.+.- .++++-+.++.+.+. +++.+ ..|+.-- +.-.+..++++ .
T Consensus 85 rs~edv~-~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~-----~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~ 158 (241)
T PRK14024 85 RDDESLE-AALATGCARVNIGTAALENPEWCARVIAEHG-----DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSA 158 (241)
T ss_pred CCHHHHH-HHHHCCCCEEEECchHhCCHHHHHHHHHHhh-----hhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhc
Confidence 3457775 45889999877653 466666666654442 23211 1111000 00112233332 2
Q ss_pred -CCEEEE-eCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCc
Q 036921 273 -ADGIIL-SRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE 349 (527)
Q Consensus 273 -sDgImI-aRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~E 349 (527)
++.+++ +|.==|.--|+ ++..+ +++ ++....|+|. ..+ -+..++..+......|+|++|+..-
T Consensus 159 G~~~iiv~~~~~~g~~~G~-d~~~i-~~i---~~~~~ipviasGGi---------~s~~D~~~l~~~~~~GvdgV~igra 224 (241)
T PRK14024 159 GCSRYVVTDVTKDGTLTGP-NLELL-REV---CARTDAPVVASGGV---------SSLDDLRALAELVPLGVEGAIVGKA 224 (241)
T ss_pred CCCEEEEEeecCCCCccCC-CHHHH-HHH---HhhCCCCEEEeCCC---------CCHHHHHHHhhhccCCccEEEEeHH
Confidence 266666 33222222233 32222 233 3456899998 663 3444444443333469999999877
Q ss_pred cccCCChHHHH
Q 036921 350 TLRGLYPVETI 360 (527)
Q Consensus 350 ta~G~yP~e~V 360 (527)
--.|.++++-.
T Consensus 225 ~~~g~~~~~~~ 235 (241)
T PRK14024 225 LYAGAFTLPEA 235 (241)
T ss_pred HHcCCCCHHHH
Confidence 77888887654
No 317
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=45.21 E-value=3.3e+02 Score=27.23 Aligned_cols=96 Identities=16% Similarity=0.095 Sum_probs=54.4
Q ss_pred hcccccccEEEecCC----------CCHHHHHHHHHHHHHcCCCCCceEEE-------ee------cChHhHhhHHHHHH
Q 036921 215 WGVQNKIDFLSLSYT----------RHAEDVRQAREYLSKLGDLSQTQIFA-------KI------ENIEGLTHFDEILQ 271 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV----------~s~~dv~~lr~~l~~~~~~~~~~Iia-------KI------Et~~av~nldeI~~ 271 (527)
.+.+.|+|+|=++.- .+.+++.++++.+.+.| -.+.-++ -+ ...++++.+...++
T Consensus 24 ~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g--l~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~ 101 (279)
T TIGR00542 24 LAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETG--VRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQ 101 (279)
T ss_pred HHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcC--CCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHH
Confidence 567999999977521 14778899999998877 2222111 01 11134445555555
Q ss_pred hC-----CEEEEeCCCCcCCC-C---chhHHHHHHHHHHHHHHcCCcEEE
Q 036921 272 AA-----DGIILSRGNLGIDL-P---PEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 272 ~s-----DgImIaRgDLg~e~-~---~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
.+ +.|.+.-++...+- . ++.+....++++..|.++|..+.+
T Consensus 102 ~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 102 LARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 43 55655433322111 1 234445556777778888887766
No 318
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=45.11 E-value=2.3e+02 Score=28.77 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=53.4
Q ss_pred CCEEEEeCCCCc--CCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHH-HHHhCCcEEEeCC
Q 036921 273 ADGIILSRGNLG--IDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVLDGSDAILLGA 348 (527)
Q Consensus 273 sDgImIaRgDLg--~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n-av~~g~D~imLs~ 348 (527)
.||+++. |--| ..+..++-..+-+.+++.+. -..|+++ +. ..+-.|.-+.+. |...|+|++|+..
T Consensus 36 v~gi~~~-Gs~GE~~~ls~~Er~~~~~~~~~~~~-~~~~vi~gv~---------~~~~~~~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 36 TDGLVVV-GTTGESPTLTHEEHEELIRAVVEAVN-GRVPVIAGTG---------SNSTAEAIELTKFAEKAGADGALVVT 104 (292)
T ss_pred CCEEEEC-CcCCccccCCHHHHHHHHHHHHHHhC-CCCcEEeecC---------CchHHHHHHHHHHHHHcCCCEEEECC
Confidence 4899974 3322 34444444444444444442 2468877 43 223455555444 4556999999986
Q ss_pred ccccCCChHHHHHHHHHHHHHHh
Q 036921 349 ETLRGLYPVETISIVGKICAEAE 371 (527)
Q Consensus 349 Eta~G~yP~e~V~~~~~i~~~aE 371 (527)
=.-....+-+.+++.+.|+..++
T Consensus 105 P~~~~~~~~~i~~~~~~ia~~~~ 127 (292)
T PRK03170 105 PYYNKPTQEGLYQHFKAIAEATD 127 (292)
T ss_pred CcCCCCCHHHHHHHHHHHHhcCC
Confidence 55444456788899999987764
No 319
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.81 E-value=34 Score=38.22 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=44.0
Q ss_pred CCCCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHH
Q 036921 26 FPAMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAA 79 (527)
Q Consensus 26 ~~~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~ 79 (527)
...+=.+.+.+|+. +..+..+.|+++|+++.=+.-+||..+...+.|+.+|+.
T Consensus 228 ~~grL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~ 280 (502)
T PRK07107 228 SSKRYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREK 280 (502)
T ss_pred hccCeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHh
Confidence 34566677888885 567999999999999999999999988888888888864
No 320
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=44.78 E-value=56 Score=26.20 Aligned_cols=69 Identities=22% Similarity=0.271 Sum_probs=42.3
Q ss_pred CcEEeecCCEEEEeeCCCCCCCCcEEe-eccchhhhhcCCCC--EEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEeC
Q 036921 106 KAISLKADGSVVLTPDCGQEATSQVLP-INFDGLAKSVKKGD--TIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNT 182 (527)
Q Consensus 106 ~~i~l~~G~~v~l~~~~~~~~~~~~i~-v~~~~l~~~v~~gd--~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~~ 182 (527)
..+.++.|+.+.|............-+ .+.. .+..++ .+..+ ++.-.|.+ ..+..-+.+...|.+.+.
T Consensus 8 ~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~----~l~~~~~~~~~~~----~~~~~L~I-~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 8 KDVTVKEGESVTLECEVSGNPPPTVTWYKNGR----PLTSSQRYQIESD----GGSSSLTI-KNVTREDAGTYTCVASNS 78 (90)
T ss_dssp SEEEEETTSEEEEEEEEEESSSSEEEEEETTE----EEESSSSEEEEEE----TTEEEEEE-SSESGGGSEEEEEEEEET
T ss_pred CCEEEeCCCEEEEEEEEEeCCCCccccccccc----ceeeeeeeeeecc----cceeEEcc-CCCChhhCEEEEEEEEEC
Confidence 468999999999998643111222223 3322 222233 44444 67777877 555554667899999986
Q ss_pred c
Q 036921 183 A 183 (527)
Q Consensus 183 G 183 (527)
+
T Consensus 79 ~ 79 (90)
T PF07679_consen 79 S 79 (90)
T ss_dssp T
T ss_pred C
Confidence 3
No 321
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=44.76 E-value=3.8e+02 Score=27.75 Aligned_cols=130 Identities=12% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhC-CEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-
Q 036921 235 VRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAA-DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV- 312 (527)
Q Consensus 235 v~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~s-DgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~- 312 (527)
...++.+..+.+ -.++|...+....-++.+..-++.- +-||+. |-.+|+++=...-+++++.|+++|.+|=.
T Consensus 64 ~~~~~~~a~~~~--~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~Trevv~~Ah~~gv~VEaE 137 (285)
T PRK07709 64 VAMVKALIEEMN--ITVPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHHPFEENVETTKKVVEYAHARNVSVEAE 137 (285)
T ss_pred HHHHHHHHHHcC--CCCcEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Q ss_pred -ecchhhhhcCCCCC--hHhhhhHHHHHHh-CCcEEEeCCccccCCC---hHHHHHHHHHHHHHH
Q 036921 313 -TRVVDSMTDNLRPT--RAEATDVANAVLD-GSDAILLGAETLRGLY---PVETISIVGKICAEA 370 (527)
Q Consensus 313 -Tq~LeSM~~~p~Pt--raEv~Dv~nav~~-g~D~imLs~Eta~G~y---P~e~V~~~~~i~~~a 370 (527)
.++=-.--....-. -....+...++.. |+|++-.|-=|+-|.| |.--.+.+.+|.++.
T Consensus 138 lG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~ 202 (285)
T PRK07709 138 LGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFT 202 (285)
T ss_pred EeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHH
No 322
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=44.73 E-value=2.9e+02 Score=26.46 Aligned_cols=127 Identities=19% Similarity=0.151 Sum_probs=67.4
Q ss_pred HHHHhhcccccccEEEe-----cCCCC----HHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEe
Q 036921 210 EVISSWGVQNKIDFLSL-----SYTRH----AEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILS 279 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~-----sfV~s----~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIa 279 (527)
+.++ .+.+.|+|+|-+ +|+.+ .+.++++++.+. ....+--++-. ..+.++.+.++ .||+.+-
T Consensus 20 ~~~~-~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~-----~~~~v~l~v~d--~~~~i~~~~~~g~d~v~vh 91 (220)
T PRK05581 20 EEVK-AVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTK-----LPLDVHLMVEN--PDRYVPDFAKAGADIITFH 91 (220)
T ss_pred HHHH-HHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCC-----CcEEEEeeeCC--HHHHHHHHHHcCCCEEEEe
Confidence 4454 568899999999 88854 455555554331 11123344433 33345555544 4997774
Q ss_pred CCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCC--ccccC-CC
Q 036921 280 RGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA--ETLRG-LY 355 (527)
Q Consensus 280 RgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~--Eta~G-~y 355 (527)
-+ .. ......++.++++|..+++ +. |. |..| ....+..++|.+++.+ .+..| .+
T Consensus 92 ~~-------~~---~~~~~~~~~~~~~~~~~g~~~~--------~~-t~~e---~~~~~~~~~d~i~~~~~~~g~tg~~~ 149 (220)
T PRK05581 92 VE-------AS---EHIHRLLQLIKSAGIKAGLVLN--------PA-TPLE---PLEDVLDLLDLVLLMSVNPGFGGQKF 149 (220)
T ss_pred ec-------cc---hhHHHHHHHHHHcCCEEEEEEC--------CC-CCHH---HHHHHHhhCCEEEEEEECCCCCcccc
Confidence 22 11 1224558899999998887 42 11 2232 2334455688665532 22223 33
Q ss_pred hHHHHHHHHHH
Q 036921 356 PVETISIVGKI 366 (527)
Q Consensus 356 P~e~V~~~~~i 366 (527)
+-..++.++++
T Consensus 150 ~~~~~~~i~~~ 160 (220)
T PRK05581 150 IPEVLEKIREL 160 (220)
T ss_pred cHHHHHHHHHH
Confidence 44444544444
No 323
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=44.63 E-value=3.4e+02 Score=27.22 Aligned_cols=150 Identities=9% Similarity=0.040 Sum_probs=84.9
Q ss_pred CCHhhHHHHHhhcccccccEEEecCC------------CCHHHHHHHHHHHHHcCCCCCceEEEeecChHh-HhhHHHHH
Q 036921 204 LSDKDKEVISSWGVQNKIDFLSLSYT------------RHAEDVRQAREYLSKLGDLSQTQIFAKIENIEG-LTHFDEIL 270 (527)
Q Consensus 204 lt~~D~~di~~~~~~~g~d~I~~sfV------------~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~a-v~nldeI~ 270 (527)
++..++..+.+...+.|+|.|=+.|. ....+-+.++.+... . .+.++.+......+ .+.++...
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~-~--~~~~~~~~~~~~~~~~~~i~~a~ 95 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEA-L--KQAKLGVLLLPGIGTVDDLKMAA 95 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHh-c--cCCEEEEEecCCccCHHHHHHHH
Confidence 46666666655667889999866421 011122233333222 2 34555554321011 22233333
Q ss_pred Hh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHH-HHhCCcEEEeCC
Q 036921 271 QA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANA-VLDGSDAILLGA 348 (527)
Q Consensus 271 ~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~na-v~~g~D~imLs~ 348 (527)
+. .|.+-+. .+..++. ..+..++.+++.|..+.++ +. +. ..=+..++.+++.. ...|+|.+.|.
T Consensus 96 ~~g~~~iri~-------~~~s~~~-~~~~~i~~ak~~G~~v~~~-~~--~~--~~~~~~~~~~~~~~~~~~G~d~i~l~- 161 (263)
T cd07943 96 DLGVDVVRVA-------THCTEAD-VSEQHIGAARKLGMDVVGF-LM--MS--HMASPEELAEQAKLMESYGADCVYVT- 161 (263)
T ss_pred HcCCCEEEEE-------echhhHH-HHHHHHHHHHHCCCeEEEE-EE--ec--cCCCHHHHHHHHHHHHHcCCCEEEEc-
Confidence 32 3665542 2333443 3466899999999987761 11 11 12345777777765 44599999995
Q ss_pred ccccCCChHHHHHHHHHHHHHH
Q 036921 349 ETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 349 Eta~G~yP~e~V~~~~~i~~~a 370 (527)
+|.=.-+|.+.-++++.+-++.
T Consensus 162 DT~G~~~P~~v~~lv~~l~~~~ 183 (263)
T cd07943 162 DSAGAMLPDDVRERVRALREAL 183 (263)
T ss_pred CCCCCcCHHHHHHHHHHHHHhC
Confidence 8877889998888877776543
No 324
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=44.47 E-value=2.3e+02 Score=28.26 Aligned_cols=113 Identities=16% Similarity=0.118 Sum_probs=64.2
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhC-CEEE-Ee-CCCCcCCCCchh
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAA-DGII-LS-RGNLGIDLPPEK 291 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~s-DgIm-Ia-RgDLg~e~~~~~ 291 (527)
.+.+.|+|++++|-.. .|+...+.+.+.+.| -+..++..=.| ..+.+..|++.+ |-|. ++ .|=-|...++.
T Consensus 99 ~~~~aG~~giiipDl~-~ee~~~~~~~~~~~g--~~~i~~i~P~T--~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~- 172 (242)
T cd04724 99 DAKEAGVDGLIIPDLP-PEEAEEFREAAKEYG--LDLIFLVAPTT--PDERIKKIAELASGFIYYVSRTGVTGARTELP- 172 (242)
T ss_pred HHHHCCCcEEEECCCC-HHHHHHHHHHHHHcC--CcEEEEeCCCC--CHHHHHHHHhhCCCCEEEEeCCCCCCCccCCC-
Confidence 3478999999996543 478888888888877 33333233333 456788888844 5333 34 33344443321
Q ss_pred HHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 292 VFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 292 v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+...+.+-+..+...+|+.+ ..+ =+.+ ++...... +|++...
T Consensus 173 -~~~~~~i~~lr~~~~~pI~vggGI---------~~~e---~~~~~~~~-ADgvVvG 215 (242)
T cd04724 173 -DDLKELIKRIRKYTDLPIAVGFGI---------STPE---QAAEVAKY-ADGVIVG 215 (242)
T ss_pred -hhHHHHHHHHHhcCCCcEEEEccC---------CCHH---HHHHHHcc-CCEEEEC
Confidence 22223332233334899998 663 2223 33444445 8888875
No 325
>PRK05638 threonine synthase; Validated
Probab=44.43 E-value=2.2e+02 Score=31.10 Aligned_cols=107 Identities=19% Similarity=0.101 Sum_probs=66.2
Q ss_pred HHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 297 KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
..+...|+++|.|+.+. .|..+....+...-..|++.+... |. .-++++...+++++ ...++
T Consensus 125 ~alA~~aa~~G~~~~i~----------vp~~~~~~k~~~~~~~GA~vi~v~-----~~-~~~~~~~a~~~~~~--~~~~~ 186 (442)
T PRK05638 125 ASVAAYSARAGKEAFVV----------VPRKVDKGKLIQMIAFGAKIIRYG-----ES-VDEAIEYAEELARL--NGLYN 186 (442)
T ss_pred HHHHHHHHHcCCCEEEE----------EeCCCCHHHHHHHHhcCcEEEEEC-----CC-HHHHHHHHHHHHHh--CCeEe
Confidence 45667889999998871 244444555666667799998874 23 46777776666432 11111
Q ss_pred hhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHhh
Q 036921 377 DLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFTSSGRAARLIAKY 429 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T~sG~tA~~is~~ 429 (527)
...+. .| ...+.....+.+++.+++.+.||+.+-+|.+..-+++.
T Consensus 187 ~~~~~-------np-~~~eG~~t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~g 231 (442)
T PRK05638 187 VTPEY-------NI-IGLEGQKTIAFELWEEINPTHVIVPTGSGSYLYSIYKG 231 (442)
T ss_pred cCCCC-------Ch-hHhhhHHHHHHHHHHHHCcCEEEEeCCchHHHHHHHHH
Confidence 11110 01 12333344566777777899999999999998766653
No 326
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=44.30 E-value=2.8e+02 Score=26.22 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=71.9
Q ss_pred HHHHHhhcccccccEEEe-----cCCCC-HHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeCC
Q 036921 209 KEVISSWGVQNKIDFLSL-----SYTRH-AEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSRG 281 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~-----sfV~s-~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaRg 281 (527)
.++++ .+.+.|+|.|-+ +|+.+ ....+.++++-...+ ..+.+..+....+ +-++.+.+. +|||.+--
T Consensus 14 ~~~~~-~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~--~~v~v~lm~~~~~--~~~~~~~~~gadgv~vh~- 87 (210)
T TIGR01163 14 GEEVK-AVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTD--LPIDVHLMVENPD--RYIEDFAEAGADIITVHP- 87 (210)
T ss_pred HHHHH-HHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCC--CcEEEEeeeCCHH--HHHHHHHHcCCCEEEEcc-
Confidence 35554 567889999988 36644 333333333222111 2233446666543 345666655 49988831
Q ss_pred CCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCC--ccccC-CChH
Q 036921 282 NLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA--ETLRG-LYPV 357 (527)
Q Consensus 282 DLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~--Eta~G-~yP~ 357 (527)
... ......++.++++|...++ .. + -|.. +...++..++|.+++.+ .+..| .++.
T Consensus 88 ------~~~---~~~~~~~~~~~~~g~~~~~~~~--------~-~t~~---e~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 146 (210)
T TIGR01163 88 ------EAS---EHIHRLLQLIKDLGAKAGIVLN--------P-ATPL---EFLEYVLPDVDLVLLMSVNPGFGGQKFIP 146 (210)
T ss_pred ------CCc---hhHHHHHHHHHHcCCcEEEEEC--------C-CCCH---HHHHHHHhhCCEEEEEEEcCCCCcccccH
Confidence 111 1225667899999988776 32 1 1222 22445566889887732 12223 5666
Q ss_pred HHHHHHHHHHH
Q 036921 358 ETISIVGKICA 368 (527)
Q Consensus 358 e~V~~~~~i~~ 368 (527)
..++.++++.+
T Consensus 147 ~~~~~i~~i~~ 157 (210)
T TIGR01163 147 DTLEKIREVRK 157 (210)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 327
>PRK08185 hypothetical protein; Provisional
Probab=44.28 E-value=3.8e+02 Score=27.68 Aligned_cols=105 Identities=12% Similarity=0.230 Sum_probs=72.8
Q ss_pred CCceEEEeecChHhHhhHHHHHHhC-CEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCC--C
Q 036921 249 SQTQIFAKIENIEGLTHFDEILQAA-DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNL--R 324 (527)
Q Consensus 249 ~~~~IiaKIEt~~av~nldeI~~~s-DgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p--~ 324 (527)
.++++...+....-++.+..-++.- +.||+.-.+ +|+++-...-+++++.|+++|.++=. -..+-.=.... .
T Consensus 67 ~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~----l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~ 142 (283)
T PRK08185 67 SPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSL----LPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGG 142 (283)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCC----CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccc
Confidence 4678999998887766666666543 789998555 47888888999999999999999865 22231100000 0
Q ss_pred CC---hHhhhhHHHHHHh-CCcEEEeCCccccCCChH
Q 036921 325 PT---RAEATDVANAVLD-GSDAILLGAETLRGLYPV 357 (527)
Q Consensus 325 Pt---raEv~Dv~nav~~-g~D~imLs~Eta~G~yP~ 357 (527)
.+ -....++..++.. |+|++-.|--|+-|.||-
T Consensus 143 ~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~ 179 (283)
T PRK08185 143 VSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPK 179 (283)
T ss_pred cccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCC
Confidence 00 1122334667776 999999999999999964
No 328
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=44.21 E-value=3.7e+02 Score=27.57 Aligned_cols=133 Identities=14% Similarity=0.048 Sum_probs=71.5
Q ss_pred cccEEEecCC-----------CCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-------CCEEEEe--
Q 036921 220 KIDFLSLSYT-----------RHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-------ADGIILS-- 279 (527)
Q Consensus 220 g~d~I~~sfV-----------~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-------sDgImIa-- 279 (527)
++|+|-+.+- ++++.+.++.+.+.+. -+++|++||=--...+++.++++. .|||.+.
T Consensus 119 ~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~---~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt 195 (294)
T cd04741 119 FPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAA---YSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNT 195 (294)
T ss_pred cccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHh---cCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEcc
Confidence 5777665432 2456666666666543 357899999322222234444442 2456631
Q ss_pred ----------CCC--C--cCCC-Cc---hhHHHHHHHHHHHHHHcC--CcEEE-ecchhhhhcCCCCChHhhhhHHHHHH
Q 036921 280 ----------RGN--L--GIDL-PP---EKVFLFQKAALYKCNMAG--KPAVV-TRVVDSMTDNLRPTRAEATDVANAVL 338 (527)
Q Consensus 280 ----------RgD--L--g~e~-~~---~~v~~~qk~Ii~~c~~~g--Kpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~ 338 (527)
|.- | .... |+ .--+.+.+.+-...++.+ .|+|- ..+. -..|+..+++
T Consensus 196 ~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~------------s~~da~e~l~ 263 (294)
T cd04741 196 LGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVL------------DGRGAFRMRL 263 (294)
T ss_pred CCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCC------------CHHHHHHHHH
Confidence 221 1 1111 11 124445555555555553 89988 7653 3467788888
Q ss_pred hCCcEEEeCCccccCCChHHHHHHHHHHHHHHhh
Q 036921 339 DGSDAILLGAETLRGLYPVETISIVGKICAEAEK 372 (527)
Q Consensus 339 ~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~ 372 (527)
.|||+||+..-.-. .-| ...++|+++.+.
T Consensus 264 aGA~~Vqv~ta~~~-~gp----~~~~~i~~~L~~ 292 (294)
T cd04741 264 AGASAVQVGTALGK-EGP----KVFARIEKELED 292 (294)
T ss_pred cCCCceeEchhhhh-cCc----hHHHHHHHHHHh
Confidence 99999999844322 234 344455555443
No 329
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=43.94 E-value=88 Score=31.44 Aligned_cols=62 Identities=6% Similarity=0.003 Sum_probs=40.4
Q ss_pred CCeEEEEec--CCCC-----C--CHHHHHHHHHcCCCe--EEeecCCCCHHHHHHHHHHHHHHHHHcCCceEE
Q 036921 28 AMTKIVGTL--GPKS-----R--SVDVISGCLKAGMSV--ARFDFSWGNTEYHQETLENLKAAVKTTKKLCAV 89 (527)
Q Consensus 28 ~~tkIi~Ti--Gp~~-----~--~~~~l~~l~~~G~~v--~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i 89 (527)
..++++.++ |... . -...+++.++.|++. +|.|...-+..+..+.+..+++++.++|.|+-+
T Consensus 69 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv 141 (258)
T TIGR01949 69 KDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLA 141 (258)
T ss_pred CCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 467788888 4222 1 124589999999984 556644333344556777778888888877655
No 330
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=43.81 E-value=2.6e+02 Score=28.91 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=56.2
Q ss_pred hhcccccccEEEec------CCCCHHHHHHHHH-HHHHcCCCCCceEEEeec---ChHhHhhHHHHHHh-CCEEEEeCCC
Q 036921 214 SWGVQNKIDFLSLS------YTRHAEDVRQARE-YLSKLGDLSQTQIFAKIE---NIEGLTHFDEILQA-ADGIILSRGN 282 (527)
Q Consensus 214 ~~~~~~g~d~I~~s------fV~s~~dv~~lr~-~l~~~~~~~~~~IiaKIE---t~~av~nldeI~~~-sDgImIaRgD 282 (527)
++.++.|+++|++. +.-|.++=+++.+ ..+..+ .++.||+-+= +.++++....--+. +|++|+.+-.
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~--grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~ 113 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVA--GRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPM 113 (309)
T ss_pred HHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhC--CCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 47789999999873 2334455444443 444444 6788999884 44555544444443 4999997553
Q ss_pred CcCCCCchhHHHHHHHHHHHHHHc-CCcEEE
Q 036921 283 LGIDLPPEKVFLFQKAALYKCNMA-GKPAVV 312 (527)
Q Consensus 283 Lg~e~~~~~v~~~qk~Ii~~c~~~-gKpvi~ 312 (527)
.- ..+-+.+...-+.|.+ +. +.|+++
T Consensus 114 y~-~~~~~~l~~yf~~va~---a~~~lPv~i 140 (309)
T cd00952 114 WL-PLDVDTAVQFYRDVAE---AVPEMAIAI 140 (309)
T ss_pred CC-CCCHHHHHHHHHHHHH---hCCCCcEEE
Confidence 21 1233555555555555 46 589987
No 331
>PRK15447 putative protease; Provisional
Probab=43.73 E-value=1.4e+02 Score=30.78 Aligned_cols=66 Identities=15% Similarity=0.027 Sum_probs=47.6
Q ss_pred CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 273 ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 273 sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+|+|.+|-..++.-.++. ..-.+++++.|+++||.+.+ +.-+ .....|...+...+..|.|+|+.+
T Consensus 29 aDaVY~g~~~~~~R~~f~--~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 29 VDIVYLGETVCSKRRELK--VGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CCEEEECCccCCCccCCC--HHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhcCCCEEEEe
Confidence 699999977777654432 24456788889999999998 6321 122458888888888899988864
No 332
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=43.71 E-value=3.1e+02 Score=27.38 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=45.3
Q ss_pred HHHHHHhcCCcEEEE--ECCCc-------HHHHHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEe
Q 036921 401 AVRAAIKVKASVIIC--FTSSG-------RAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPML 471 (527)
Q Consensus 401 av~~a~~~~a~~Ivv--~T~sG-------~tA~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l 471 (527)
.++...+.+++.|++ .++.| ..+..+.+. .+.||+|.-- ..+..-+..+.-.-|+..+.
T Consensus 160 ~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~-~~ipvia~GG-----------i~s~~di~~~~~~g~~dgv~ 227 (254)
T TIGR00735 160 WAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEA-VKIPVIASGG-----------AGKPEHFYEAFTKGKADAAL 227 (254)
T ss_pred HHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHh-CCCCEEEeCC-----------CCCHHHHHHHHHcCCcceee
Confidence 344556789999888 55544 345556554 6799998621 45665555553333355543
Q ss_pred cCCCCCCCCCccCHHHHHHHHHHHHHHcCC
Q 036921 472 ADPRHPAESTNATNESVLKVALDHGKASGV 501 (527)
Q Consensus 472 ~~~~~~~~~~~~~~e~~i~~a~~~a~e~g~ 501 (527)
...... +.+-.+..+.+++++.|+
T Consensus 228 ~g~a~~------~~~~~~~~~~~~~~~~gi 251 (254)
T TIGR00735 228 AASVFH------YREITIGEVKEYLAERGI 251 (254)
T ss_pred EhHHHh------CCCCCHHHHHHHHHHCCC
Confidence 322210 001123456777777775
No 333
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=43.57 E-value=2.7e+02 Score=28.56 Aligned_cols=106 Identities=23% Similarity=0.238 Sum_probs=58.7
Q ss_pred hcccccccEEEecCCCCH--------HHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEe-CCCCc
Q 036921 215 WGVQNKIDFLSLSYTRHA--------EDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILS-RGNLG 284 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~--------~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIa-RgDLg 284 (527)
.+.+.|+|.|.+.+ ..+ +.++++++.+ ..+++.|.- ...+......+. +|+|.+. +| |
T Consensus 137 ~~~~~g~~~i~l~~-~~p~~~~~~~~~~i~~l~~~~-------~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g--G 204 (299)
T cd02809 137 RAEAAGYKALVLTV-DTPVLGRRLTWDDLAWLRSQW-------KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG--G 204 (299)
T ss_pred HHHHcCCCEEEEec-CCCCCCCCCCHHHHHHHHHhc-------CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC--C
Confidence 45678999888753 333 4555555432 357888831 222333333333 4998883 23 2
Q ss_pred CCC--CchhHHHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCC
Q 036921 285 IDL--PPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA 348 (527)
Q Consensus 285 ~e~--~~~~v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~ 348 (527)
..+ +...+ .. +.+.++.. ..|+|. ..+- ...|+..++..|||+||+..
T Consensus 205 ~~~~~g~~~~-~~---l~~i~~~~~~~ipvia~GGI~------------~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 205 RQLDGAPATI-DA---LPEIVAAVGGRIEVLLDGGIR------------RGTDVLKALALGADAVLIGR 257 (299)
T ss_pred CCCCCCcCHH-HH---HHHHHHHhcCCCeEEEeCCCC------------CHHHHHHHHHcCCCEEEEcH
Confidence 222 22111 11 11122222 489888 6642 34688999999999999974
No 334
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=43.56 E-value=2.8e+02 Score=27.74 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHH
Q 036921 294 LFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIV 363 (527)
Q Consensus 294 ~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~ 363 (527)
.+....++.++++|+++++ |. ++. .-...+...++..|+|++.- .||-.+++++
T Consensus 210 ~~~~~~v~~~~~~Gl~v~~wT~--~~~-------~n~~~~~~~l~~~GvdgiiT-------D~p~~~~~~~ 264 (265)
T cd08564 210 FWTEEFVKKAHENGLKVMTYFD--EPV-------NDNEEDYKVYLELGVDCICP-------NDPVLLVNFL 264 (265)
T ss_pred hhhHHHHHHHHHcCCEEEEecC--CCC-------CCCHHHHHHHHHcCCCEEEc-------CCHHHHHHhh
Confidence 3578899999999999999 83 111 11123345566779999765 4887766554
No 335
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=43.55 E-value=1.1e+02 Score=29.60 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 235 VRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 235 v~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
++.+.+.+.+.+ ..+.+-+.-++... +|++++++-.|.|+.+-.. +..+..+-+.|+++++|++.
T Consensus 77 a~~~~~~l~~~n--p~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~ 141 (202)
T TIGR02356 77 VEVAAQRLRELN--SDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLIS 141 (202)
T ss_pred HHHHHHHHHHhC--CCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEE
Confidence 445555566655 55555444333332 5788888888988876322 34677899999999999987
No 336
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=43.48 E-value=38 Score=32.17 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=43.6
Q ss_pred cccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhH--hhHHHHHHhC-CEEEEe
Q 036921 216 GVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGL--THFDEILQAA-DGIILS 279 (527)
Q Consensus 216 ~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av--~nldeI~~~s-DgImIa 279 (527)
+++.|+|+|.+=.. ++++++++.+.+...+ .+ .+||---|+ +|+.++.+.- |+|-+|
T Consensus 96 a~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~--~~----v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 96 ALEAGADIIMLDNM-SPEDLKEAVEELRELN--PR----VKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHHTT-SEEEEES--CHHHHHHHHHHHHHHT--TT----SEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHHhCCCEEEecCc-CHHHHHHHHHHHhhcC--Cc----EEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 58999999999876 7899999999888776 55 445544554 5888888876 999886
No 337
>PRK06382 threonine dehydratase; Provisional
Probab=43.31 E-value=4.5e+02 Score=28.29 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=69.0
Q ss_pred HHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchh
Q 036921 299 ALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQD 377 (527)
Q Consensus 299 Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~ 377 (527)
+...|+..|.|+.+ . |..+-...+...-..|++.+.. ++ ..-++.+...++.++ +.. .|-
T Consensus 88 ~A~aa~~~G~~~~ivm-----------p~~~~~~k~~~~~~~GA~Vv~~-~~-----~~~~a~~~a~~la~~-~~~-~~v 148 (406)
T PRK06382 88 VAYAASINGIDAKIVM-----------PEYTIPQKVNAVEAYGAHVILT-GR-----DYDEAHRYADKIAMD-ENR-TFI 148 (406)
T ss_pred HHHHHHHcCCCEEEEE-----------cCCCHHHHHHHHHHcCCEEEEE-CC-----CHHHHHHHHHHHHHh-cCC-Eec
Confidence 67789999999887 3 3333223334444569987643 32 345676666666543 121 111
Q ss_pred hhhhhhhcccCCCCChHHHHHHHHHHHHHhcC-CcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 378 LYFKKTVKCVGEPMTHLESIASSAVRAAIKVK-ASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
..|.+ + ...+.-...+.++.++++ .++||+..-+|.++.-+++ ..|.+.|+++-+
T Consensus 149 ~~~~~-------~-~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~ 208 (406)
T PRK06382 149 EAFND-------R-WVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIES 208 (406)
T ss_pred CccCC-------h-HHHHHHHHHHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 11110 0 122233345666666664 7999999999998766665 489999999854
No 338
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=43.02 E-value=1.2e+02 Score=29.21 Aligned_cols=66 Identities=17% Similarity=0.185 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCCCCceEEEeecChH-hHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 235 VRQAREYLSKLGDLSQTQIFAKIENIE-GLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 235 v~~lr~~l~~~~~~~~~~IiaKIEt~~-av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
++.+.+.|.+.+ .++.|.+.-|... ..++.+++++..|.|+.+-.+ +.....+-+.|+++++|++.
T Consensus 77 a~~~~~~L~~lN--p~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~----------~~~~~~ln~~c~~~~ip~i~ 143 (198)
T cd01485 77 AAASYEFLQELN--PNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN----------YERTAKVNDVCRKHHIPFIS 143 (198)
T ss_pred HHHHHHHHHHHC--CCCEEEEEecccccchhhHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEE
Confidence 345566677777 7777777666553 246778888888988876322 34566788999999999998
No 339
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=42.90 E-value=64 Score=28.99 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=25.2
Q ss_pred hcCCCCChHhhhhHHHHHHhCCcEEEeCCcc
Q 036921 320 TDNLRPTRAEATDVANAVLDGSDAILLGAET 350 (527)
Q Consensus 320 ~~~p~PtraEv~Dv~nav~~g~D~imLs~Et 350 (527)
+.-|-..|-+...+..|...|||+|++.+--
T Consensus 32 IrvpC~Grv~~~~il~Af~~GADGV~V~gC~ 62 (124)
T PF02662_consen 32 IRVPCSGRVDPEFILRAFEKGADGVLVAGCH 62 (124)
T ss_pred EEccCCCccCHHHHHHHHHcCCCEEEEeCCC
Confidence 3445667778899999999999999997655
No 340
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=42.87 E-value=70 Score=26.83 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=29.7
Q ss_pred chhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEeCcEe
Q 036921 136 DGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTATL 185 (527)
Q Consensus 136 ~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~~G~l 185 (527)
.++.+.+++||+|..- .|-. =+| .+++++.+..++..|..+
T Consensus 32 ~~m~~~L~~Gd~VvT~----gGi~-G~V----~~i~d~~v~vei~~g~~i 72 (84)
T TIGR00739 32 KKLIESLKKGDKVLTI----GGII-GTV----TKIAENTIVIELNDNTEI 72 (84)
T ss_pred HHHHHhCCCCCEEEEC----CCeE-EEE----EEEeCCEEEEEECCCeEE
Confidence 4678899999999999 5544 455 355778887777666665
No 341
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=42.86 E-value=3.1e+02 Score=27.31 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=23.3
Q ss_pred HHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCcc
Q 036921 303 CNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET 350 (527)
Q Consensus 303 c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Et 350 (527)
+++.+.|+++ .. .-+.. |+..++..|+|+++++.+.
T Consensus 70 ~~~~~ipv~~~GG---------i~s~~---~~~~~l~~Ga~~Viigt~~ 106 (253)
T PRK02083 70 AEQVFIPLTVGGG---------IRSVE---DARRLLRAGADKVSINSAA 106 (253)
T ss_pred HHhCCCCEEeeCC---------CCCHH---HHHHHHHcCCCEEEEChhH
Confidence 3444789888 55 33444 4455555799999998443
No 342
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=42.81 E-value=2.9e+02 Score=28.04 Aligned_cols=99 Identities=13% Similarity=0.204 Sum_probs=59.5
Q ss_pred HHHHhhcccccccEEEec------CCCCHHHHHHHHHH-HHHcCCCCCceEEEeecC---hHhHhhHHHHHHh-CCEEEE
Q 036921 210 EVISSWGVQNKIDFLSLS------YTRHAEDVRQAREY-LSKLGDLSQTQIFAKIEN---IEGLTHFDEILQA-ADGIIL 278 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~s------fV~s~~dv~~lr~~-l~~~~~~~~~~IiaKIEt---~~av~nldeI~~~-sDgImI 278 (527)
+.+.++.++.|+|++++. +--|.++=.++-+. ++..+ .++.|++.+-. .++++.+...-+. +||+|+
T Consensus 25 ~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~--~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v 102 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA--GRVPVIAGVGANSTEEAIELARHAQDAGADAVLV 102 (289)
T ss_dssp HHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT--TSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc--CceEEEecCcchhHHHHHHHHHHHhhcCceEEEE
Confidence 333347789999999884 23344444444443 44445 67889998853 4455544443333 499998
Q ss_pred eCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ec
Q 036921 279 SRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TR 314 (527)
Q Consensus 279 aRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq 314 (527)
.+-... ..+.+.+...-+.|. .+.++|+++ ..
T Consensus 103 ~~P~~~-~~s~~~l~~y~~~ia---~~~~~pi~iYn~ 135 (289)
T PF00701_consen 103 IPPYYF-KPSQEELIDYFRAIA---DATDLPIIIYNN 135 (289)
T ss_dssp EESTSS-SCCHHHHHHHHHHHH---HHSSSEEEEEEB
T ss_pred eccccc-cchhhHHHHHHHHHH---hhcCCCEEEEEC
Confidence 755443 245556555555554 568899998 54
No 343
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=42.53 E-value=3.3e+02 Score=26.87 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeC-------CCC
Q 036921 211 VISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSR-------GNL 283 (527)
Q Consensus 211 di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaR-------gDL 283 (527)
++. .|++.++|+|-++ ++-..+..+++++. .+..|=.-+-+.+-+....+.- +|.|.+|+ -|.
T Consensus 73 ~~d-lA~~~~AdGVHlG--q~D~~~~~ar~~~~-----~~~iIG~S~h~~eea~~A~~~g--~DYv~~GpifpT~tK~~~ 142 (211)
T COG0352 73 RVD-LALAVGADGVHLG--QDDMPLAEARELLG-----PGLIIGLSTHDLEEALEAEELG--ADYVGLGPIFPTSTKPDA 142 (211)
T ss_pred cHH-HHHhCCCCEEEcC--CcccchHHHHHhcC-----CCCEEEeecCCHHHHHHHHhcC--CCEEEECCcCCCCCCCCC
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHH
Q 036921 284 GIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISI 362 (527)
Q Consensus 284 g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~ 362 (527)
--.|++.+..+.+..- +|++. ..+ +..-+.++..+ |+|+|-+........-|..+++-
T Consensus 143 -~~~G~~~l~~~~~~~~-------iP~vAIGGi----------~~~nv~~v~~~---Ga~gVAvvsai~~a~d~~~a~~~ 201 (211)
T COG0352 143 -PPLGLEGLREIRELVN-------IPVVAIGGI----------NLENVPEVLEA---GADGVAVVSAITSAADPAAAAKA 201 (211)
T ss_pred -CccCHHHHHHHHHhCC-------CCEEEEcCC----------CHHHHHHHHHh---CCCeEEehhHhhcCCCHHHHHHH
Q ss_pred HHHHHHH
Q 036921 363 VGKICAE 369 (527)
Q Consensus 363 ~~~i~~~ 369 (527)
+.+..+.
T Consensus 202 ~~~~~~~ 208 (211)
T COG0352 202 LRNALED 208 (211)
T ss_pred HHHHHHh
No 344
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=42.25 E-value=3.9e+02 Score=27.17 Aligned_cols=88 Identities=23% Similarity=0.261 Sum_probs=53.4
Q ss_pred CceEEEee--cChHhHhhHHHHHHh--CCEEEEeCC-----CCcCCCCchhHHHHHHHHHHHHHHc-CCcEEE-ecchhh
Q 036921 250 QTQIFAKI--ENIEGLTHFDEILQA--ADGIILSRG-----NLGIDLPPEKVFLFQKAALYKCNMA-GKPAVV-TRVVDS 318 (527)
Q Consensus 250 ~~~IiaKI--Et~~av~nldeI~~~--sDgImIaRg-----DLg~e~~~~~v~~~qk~Ii~~c~~~-gKpvi~-Tq~LeS 318 (527)
+.++++.| .+.+...+.-+.++. .|+|=+-=+ ..|.+++ .-+..-.+++++++++ ++|+++ -
T Consensus 89 ~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vKl----- 161 (296)
T cd04740 89 GTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVKL----- 161 (296)
T ss_pred CCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEEe-----
Confidence 46788887 455555555444443 488876210 0011221 1235556788888887 999997 3
Q ss_pred hhcCCCCChHhhhhHHH-HHHhCCcEEEeCCc
Q 036921 319 MTDNLRPTRAEATDVAN-AVLDGSDAILLGAE 349 (527)
Q Consensus 319 M~~~p~PtraEv~Dv~n-av~~g~D~imLs~E 349 (527)
.|+..|..+++. +...|+|++.+.+=
T Consensus 162 -----~~~~~~~~~~a~~~~~~G~d~i~~~nt 188 (296)
T cd04740 162 -----TPNVTDIVEIARAAEEAGADGLTLINT 188 (296)
T ss_pred -----CCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 244456777666 55679999988643
No 345
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=42.19 E-value=1.7e+02 Score=36.90 Aligned_cols=150 Identities=15% Similarity=0.047 Sum_probs=100.4
Q ss_pred CeEEEEEEeCcEecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEec---CCCCHHHHHHHHHHHHHcCCCC
Q 036921 173 NDVTCVIKNTATLAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLS---YTRHAEDVRQAREYLSKLGDLS 249 (527)
Q Consensus 173 ~~v~~~v~~~G~l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~s---fV~s~~dv~~lr~~l~~~~~~~ 249 (527)
+.|+-++-+|.+- ..|=.||+.++ |+ ....++ ....|.|.|.=| -+.|.||+.++..-|++.+ .
T Consensus 929 ~~ieIKi~QGAKP---G~GG~Lpg~KV-----~~-~IA~~R--~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~--~ 995 (1485)
T PRK11750 929 EVLQIKVAQGAKP---GEGGQLPGDKV-----NP-LIARLR--YSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVN--P 995 (1485)
T ss_pred CEEEEEecCCCCC---CCCCcCccccC-----CH-HHHHHc--CCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhC--C
Confidence 4566666666544 45778888876 32 355553 578888876533 4678899998888888887 6
Q ss_pred CceEEEeecChHhHhhHHHHH-H-hCCEEEEeCCCCcCCC-----------Cch-hHHHHHHHHHHHHHHcCCcEEE-ec
Q 036921 250 QTQIFAKIENIEGLTHFDEIL-Q-AADGIILSRGNLGIDL-----------PPE-KVFLFQKAALYKCNMAGKPAVV-TR 314 (527)
Q Consensus 250 ~~~IiaKIEt~~av~nldeI~-~-~sDgImIaRgDLg~e~-----------~~~-~v~~~qk~Ii~~c~~~gKpvi~-Tq 314 (527)
..+|-.|+=...++..+..-+ + -+|.|.|.-+|=|.-- |++ -++.+++.+...=-+....++. .+
T Consensus 996 ~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Gg 1075 (1485)
T PRK11750 996 KALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGG 1075 (1485)
T ss_pred CCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCC
Confidence 788999997777776666433 2 3599999766644322 222 4666666655554444455666 66
Q ss_pred chhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 315 VVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 315 ~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+. | -.||+-|+..|||.+-+.
T Consensus 1076 l~---------t---~~Dv~kA~aLGAd~~~~g 1096 (1485)
T PRK11750 1076 LK---------T---GLDVIKAAILGAESFGFG 1096 (1485)
T ss_pred cC---------C---HHHHHHHHHcCCcccccc
Confidence 43 1 279999999999987654
No 346
>PRK11761 cysM cysteine synthase B; Provisional
Probab=42.12 E-value=4e+02 Score=27.32 Aligned_cols=118 Identities=13% Similarity=0.104 Sum_probs=65.0
Q ss_pred HHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 298 AALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
-+...|+..|.|+.+ . |..+.-..+...-..|++.+....+ |.| .++.+...++.++ ....+
T Consensus 77 alA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~v~~~~~~---~~~-~~~~~~a~~l~~~--~~~~~ 139 (296)
T PRK11761 77 ALAMIAAIKGYRMKLIM-----------PENMSQERRAAMRAYGAELILVPKE---QGM-EGARDLALQMQAE--GEGKV 139 (296)
T ss_pred HHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHhc--cCCEe
Confidence 456689999999887 3 2222223334444569999888642 333 3444444443332 11111
Q ss_pred hhhhhhhhcccCCCCChHHHHHHHHHHHHHhc--CCcEEEEECCCcHHH----HHHHhhCCCCCEEEEe
Q 036921 377 DLYFKKTVKCVGEPMTHLESIASSAVRAAIKV--KASVIICFTSSGRAA----RLIAKYRPTMPVLSVV 439 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~--~a~~Ivv~T~sG~tA----~~is~~RP~~PIiAv~ 439 (527)
-..|.+ +..+..-....+.++.+++ ..+.||+.+-+|.+. +.+..++|.+.|+++-
T Consensus 140 ~~~~~n-------~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVe 201 (296)
T PRK11761 140 LDQFAN-------PDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQ 201 (296)
T ss_pred cCCCCC-------hhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 111111 0011101122344566666 379999999999775 4555568999999984
No 347
>PRK10425 DNase TatD; Provisional
Probab=42.07 E-value=3.3e+02 Score=27.46 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=59.9
Q ss_pred hHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCC-----CCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCC
Q 036921 208 DKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGD-----LSQTQIFAKIENIEGLTHFDEILQAADGIILSRGN 282 (527)
Q Consensus 208 D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~-----~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgD 282 (527)
|.+.+.+.+.+.|+..++.+-+ +.++..++.++...... .-|+.-+ .--+.+.++.++++++....+ |=|.
T Consensus 16 d~~~vl~~a~~~gv~~~i~~~~-~~~~~~~~~~l~~~~~~v~~~~GiHP~~~-~~~~~~~~~~l~~~~~~~~~v--aIGE 91 (258)
T PRK10425 16 DRDDVVARAFAAGVNGMLITGT-NLRESQQAQKLARQYPSCWSTAGVHPHDS-SQWQAATEEAIIELAAQPEVV--AIGE 91 (258)
T ss_pred cHHHHHHHHHHCCCCEEEEeCC-CHHHHHHHHHHHHhCCCEEEEEEeCcCcc-ccCCHHHHHHHHHhccCCCEE--EEee
Confidence 4554445667889888777755 47777777776654310 0122111 111244456666666543434 4477
Q ss_pred CcCCCCch-hHHHHH----HHHHHHHHHcCCcEEE-ec
Q 036921 283 LGIDLPPE-KVFLFQ----KAALYKCNMAGKPAVV-TR 314 (527)
Q Consensus 283 Lg~e~~~~-~v~~~q----k~Ii~~c~~~gKpvi~-Tq 314 (527)
.|++.... .-...| ++.++.|.++++|+++ +.
T Consensus 92 iGLDy~~~~~~~~~Q~~vF~~ql~lA~~~~~Pv~iH~r 129 (258)
T PRK10425 92 CGLDFNRNFSTPEEQERAFVAQLAIAAELNMPVFMHCR 129 (258)
T ss_pred eeeccccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 77776531 122344 5778899999999998 63
No 348
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=42.03 E-value=90 Score=31.46 Aligned_cols=51 Identities=29% Similarity=0.387 Sum_probs=39.1
Q ss_pred cCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHH
Q 036921 306 AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICA 368 (527)
Q Consensus 306 ~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~ 368 (527)
+..|+|+ ..+ ..|+ |.+.++..|+|+|+++.-.|.-+.|+.--+-|..-++
T Consensus 181 a~VPviVDAGi-------G~pS-----dAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 181 ADVPVIVDAGI-------GTPS-----DAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred CCCCEEEeCCC-------CChh-----HHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 3899998 553 2554 4499999999999999888888999776666665443
No 349
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=42.00 E-value=3.1e+02 Score=29.19 Aligned_cols=138 Identities=16% Similarity=0.089 Sum_probs=0.0
Q ss_pred hhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCC
Q 036921 207 KDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGID 286 (527)
Q Consensus 207 ~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e 286 (527)
.|..|+. +..|+|+|-++ ++.-.+.++|.+++ .+..|=+-.-|.+.+.+..+ .-+|.|.+|+---+..
T Consensus 207 ND~vdlA---l~~~aDGVHLg--q~dl~~~~aR~llg-----~~~iIG~S~Hs~~e~~~A~~--~GaDYI~lGPvf~T~t 274 (347)
T PRK02615 207 NDRVDIA---LAVDADGVHLG--QEDLPLAVARQLLG-----PEKIIGRSTTNPEEMAKAIA--EGADYIGVGPVFPTPT 274 (347)
T ss_pred eChHHHH---HHcCCCEEEeC--hhhcCHHHHHHhcC-----CCCEEEEecCCHHHHHHHHH--cCCCEEEECCCcCCCC
Q ss_pred CCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHH
Q 036921 287 LPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGK 365 (527)
Q Consensus 287 ~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~ 365 (527)
=+-.. +.--+.+-..+.....|++. ..+ +...+.++..+ |+|+|.+.+.-.....|.++++.+..
T Consensus 275 Kp~~~-~~Gle~l~~~~~~~~iPv~AiGGI----------~~~ni~~l~~~---Ga~gVAvisaI~~a~dp~~~~~~l~~ 340 (347)
T PRK02615 275 KPGKA-PAGLEYLKYAAKEAPIPWFAIGGI----------DKSNIPEVLQA---GAKRVAVVRAIMGAEDPKQATQELLK 340 (347)
T ss_pred CCCCC-CCCHHHHHHHHHhCCCCEEEECCC----------CHHHHHHHHHc---CCcEEEEeHHHhCCCCHHHHHHHHHH
Q ss_pred HHHHH
Q 036921 366 ICAEA 370 (527)
Q Consensus 366 i~~~a 370 (527)
...+.
T Consensus 341 ~l~~~ 345 (347)
T PRK02615 341 QLSRE 345 (347)
T ss_pred HHhcc
No 350
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=41.87 E-value=1.5e+02 Score=28.63 Aligned_cols=64 Identities=13% Similarity=0.105 Sum_probs=44.5
Q ss_pred HHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 235 VRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 235 v~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
++.+++.|.+.+ .++.|-+.-+... ++.++..+-.|.|+.+..+ +..+..+-+.|+++|+|.+.
T Consensus 77 a~a~~~~L~~lN--p~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~ 140 (197)
T cd01492 77 AEASLERLRALN--PRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYA 140 (197)
T ss_pred HHHHHHHHHHHC--CCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEE
Confidence 455566677777 6666655544433 4567777778988877433 34667788899999999987
No 351
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=41.79 E-value=2e+02 Score=29.53 Aligned_cols=112 Identities=22% Similarity=0.249 Sum_probs=66.9
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEE--eC-CCCcCCCCchh
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIIL--SR-GNLGIDLPPEK 291 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImI--aR-gDLg~e~~~~~ 291 (527)
.+.+.|+|++++|-.- .|+..++.....+.|. .-+.++|-- ..-+.++.|++.++|.+- +| |==|++.+..
T Consensus 117 ~~~~~GvdGlivpDLP-~ee~~~~~~~~~~~gi-~~I~lvaPt---t~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~~- 190 (265)
T COG0159 117 RAKEAGVDGLLVPDLP-PEESDELLKAAEKHGI-DPIFLVAPT---TPDERLKKIAEAASGFIYYVSRMGVTGARNPVS- 190 (265)
T ss_pred HHHHcCCCEEEeCCCC-hHHHHHHHHHHHHcCC-cEEEEeCCC---CCHHHHHHHHHhCCCcEEEEecccccCCCcccc-
Confidence 3457788888877543 3344456666665552 223344433 233568889999876554 44 4444444422
Q ss_pred HHHHHHHHHHHHHH-cCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 292 VFLFQKAALYKCNM-AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 292 v~~~qk~Ii~~c~~-~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
..-++.++..|+ .++|+.+ -. .=+++.+.++..+ +||+...
T Consensus 191 --~~~~~~v~~vr~~~~~Pv~vGFG---------Is~~e~~~~v~~~----ADGVIVG 233 (265)
T COG0159 191 --ADVKELVKRVRKYTDVPVLVGFG---------ISSPEQAAQVAEA----ADGVIVG 233 (265)
T ss_pred --hhHHHHHHHHHHhcCCCeEEecC---------cCCHHHHHHHHHh----CCeEEEc
Confidence 224666677766 4999998 65 4466666666665 7778765
No 352
>PRK08526 threonine dehydratase; Provisional
Probab=41.78 E-value=4.5e+02 Score=28.43 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 297 KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
.-+...|+..|.|+.+. .|..+.-..+...-..|++.++. |...-++++...+++++- . ..|
T Consensus 81 ~avA~aa~~~Gi~~~Iv----------mP~~~p~~k~~~~r~~GA~Vv~~------g~~~~~a~~~a~~~a~~~-g-~~~ 142 (403)
T PRK08526 81 QGVAISAKKFGIKAVIV----------MPEATPLLKVSGTKALGAEVILK------GDNYDEAYAFALEYAKEN-N-LTF 142 (403)
T ss_pred HHHHHHHHHcCCCEEEE----------EcCCCCHHHHHHHHhCCCEEEEE------CCCHHHHHHHHHHHHHhc-C-CEe
Confidence 45667899999998861 14334344445555679988764 234567777766654431 1 112
Q ss_pred hhhhhhhhcccCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 377 DLYFKKTVKCVGEPMTHLESIASSAVRAAIKV-KASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
-..|.+ + .....-..-+.++.+++ +.+.||+..-+|.++.-+++ .+|.+.|+++-+
T Consensus 143 v~p~~~-------~-~~i~G~gtia~EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep 203 (403)
T PRK08526 143 IHPFED-------E-EVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGA 203 (403)
T ss_pred eCCCCC-------H-HHHhhhHHHHHHHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 111110 0 11122223356666665 47999999999988655444 579999999854
No 353
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=41.64 E-value=87 Score=31.04 Aligned_cols=75 Identities=21% Similarity=0.262 Sum_probs=32.5
Q ss_pred EEeecCCEEEEeeCCC---CCCCCcEEeeccchhhhhcCCCCEEEE-ecccCCCc-eEEEEEEEEEEeeCCeEEEEEEeC
Q 036921 108 ISLKADGSVVLTPDCG---QEATSQVLPINFDGLAKSVKKGDTIFI-GQYLFTGS-ETTSVWLEVSEVKGNDVTCVIKNT 182 (527)
Q Consensus 108 i~l~~G~~v~l~~~~~---~~~~~~~i~v~~~~l~~~v~~gd~i~i-d~~~~DG~-i~l~V~l~~~~~~~~~v~~~v~~~ 182 (527)
++.+.|.++.||.+-- ..+....-+-...-+++.|++||.|++ + .. ++. -.-+| +++..+....+.+=....
T Consensus 69 i~te~g~~l~LTp~HLI~v~~~~~~~~~~~~~vfA~~V~~Gd~v~~~~-~~-~~~~~~~~V-~~v~~~~~~G~yAPLT~~ 145 (217)
T PF01079_consen 69 IETEDGRSLTLTPNHLIFVADCNGSESSNFRAVFASDVRVGDCVLVSD-EG-GGKLRPSRV-VRVSTVEKRGVYAPLTSH 145 (217)
T ss_dssp EEETTS-EEEE-TT-EEEEEETTTTEE---EEEEGGG--TT-EEEEE--TT-T--EEEEEE-EEEEEEEEEEEEEEEESS
T ss_pred EEcCCCCeEEecCCcEEEEecCCCCcccccceeehhhCCCCCEEEEEE-cC-CCcEEEEEE-EEEEEEEEeeEEcCccCc
Confidence 5566677777775421 011111110002357889999999999 3 10 122 23344 555444555566644444
Q ss_pred cEe
Q 036921 183 ATL 185 (527)
Q Consensus 183 G~l 185 (527)
|.|
T Consensus 146 Gti 148 (217)
T PF01079_consen 146 GTI 148 (217)
T ss_dssp SEE
T ss_pred ceE
Confidence 443
No 354
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=41.44 E-value=5.6e+02 Score=28.78 Aligned_cols=166 Identities=13% Similarity=0.134 Sum_probs=97.3
Q ss_pred CcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCC-CCHHHHHHHHHHHHHcCC--CCCceEEEeecC--hHhH
Q 036921 189 LFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYT-RHAEDVRQAREYLSKLGD--LSQTQIFAKIEN--IEGL 263 (527)
Q Consensus 189 ~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV-~s~~dv~~lr~~l~~~~~--~~~~~IiaKIEt--~~av 263 (527)
|-|-..|+.. +|..++..|.+...+.|+|.|=+.|- .++++.+.++.+....+. .....+.++|-. +---
T Consensus 93 RDGeQ~~gv~-----fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~ 167 (503)
T PLN03228 93 RDGEQSPGGS-----LTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKK 167 (503)
T ss_pred CCCCCCCCCC-----CCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCH
Confidence 5677777764 47777877766667799999977654 456666666555432110 001111222210 0000
Q ss_pred hhHHHHHHh-----CCEE--EEeCCCCcC----CCCchhHHHHHHHHHHHHHHcCCc-EEE-ecchhhhhcCCCCChHhh
Q 036921 264 THFDEILQA-----ADGI--ILSRGNLGI----DLPPEKVFLFQKAALYKCNMAGKP-AVV-TRVVDSMTDNLRPTRAEA 330 (527)
Q Consensus 264 ~nldeI~~~-----sDgI--mIaRgDLg~----e~~~~~v~~~qk~Ii~~c~~~gKp-vi~-Tq~LeSM~~~p~PtraEv 330 (527)
+.+|..+++ .|.| +++-.|+-. ....+++.......++.|+++|.. +.+ .+ .-+|++.
T Consensus 168 ~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~E---------Da~Rtd~ 238 (503)
T PLN03228 168 RDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCE---------DGGRSDK 238 (503)
T ss_pred hhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccc---------cccccCH
Confidence 123333332 1333 344444432 234467777778999999999975 444 32 2334443
Q ss_pred ---hhHH-HHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHH
Q 036921 331 ---TDVA-NAVLDGSDAILLGAETLRGLYPVETISIVGKICAE 369 (527)
Q Consensus 331 ---~Dv~-nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~ 369 (527)
.+++ .+...|+|.|.|. +|.=.-.|.++-+.+..+.+.
T Consensus 239 efl~~~~~~a~~~Gad~I~l~-DTvG~~tP~~v~~lV~~l~~~ 280 (503)
T PLN03228 239 EFLCKILGEAIKAGATSVGIA-DTVGINMPHEFGELVTYVKAN 280 (503)
T ss_pred HHHHHHHHHHHhcCCCEEEEe-cCCCCCCHHHHHHHHHHHHHH
Confidence 4444 3667899999997 787778899998888887654
No 355
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=41.24 E-value=94 Score=33.61 Aligned_cols=308 Identities=18% Similarity=0.184 Sum_probs=157.7
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHH-H--HHHHHHH-HHHHHHcCCceEEEecCCCCeEEeeeCC
Q 036921 29 MTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEY-H--QETLENL-KAAVKTTKKLCAVMLDTVGPELQVVNKS 104 (527)
Q Consensus 29 ~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~-~--~~~i~~i-r~~~~~~~~~v~i~~Dl~GpkiR~~~~~ 104 (527)
-++|-+++ .+|+.|++.|..+.= +||-..-. . .--++.+ +..++-++++|...-|.-||+.+-.
T Consensus 32 d~RI~~~l-------pTI~~l~~~gakvvl--~sH~gRP~g~~~~~SL~~va~~L~~lL~~~V~fv~d~~g~~~~~~--- 99 (389)
T PRK00073 32 DTRIRAAL-------PTIKYLLEKGAKVIL--LSHLGRPKGEDPEFSLAPVAKRLSELLGKEVKFVDDCIGEEAREA--- 99 (389)
T ss_pred hHhHHHHH-------HHHHHHHHCCCeEEE--EEecCCCCCCCCCcCHHHHHHHHHHHhCCCeEECCCCCCHHHHHH---
Confidence 45555554 489999999987654 47765220 0 0112222 2233446788887777888776631
Q ss_pred CCcEEeecCCEEEEeeCCCCCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEEeCcE
Q 036921 105 EKAISLKADGSVVLTPDCGQEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIKNTAT 184 (527)
Q Consensus 105 ~~~i~l~~G~~v~l~~~~~~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~~~G~ 184 (527)
.-.+++|+.+.|-.-.-..++.. +.+.|.+.+.+---||++ |.-= + .
T Consensus 100 --i~~l~~G~ilLLEN~Rf~~~E~~----~d~~~a~~LA~l~DiyVN----DAFg---~----a---------------- 146 (389)
T PRK00073 100 --IAALKDGEVLLLENVRFNKGEEK----NDPELAKKLASLGDVFVN----DAFG---T----A---------------- 146 (389)
T ss_pred --HhcCCCCcEEEEeccCcCccccc----CHHHHHHHHHHhCCEEEE----Cchh---h----h----------------
Confidence 12466777766654322222221 335677777664457777 5411 1 0
Q ss_pred ecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCce--EE--EeecCh
Q 036921 185 LAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQ--IF--AKIENI 260 (527)
Q Consensus 185 l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~--Ii--aKIEt~ 260 (527)
-|+.-.+-|...-+|. ...- +.+ .+++..+.+++..- +++. |+ ||+.+.
T Consensus 147 ---HR~haS~vgi~~~lp~------~~aG-~lm--------------ekEl~~L~k~l~~p---~rP~vaIlGGaKvsdK 199 (389)
T PRK00073 147 ---HRAHASTVGIAKFLKP------AAAG-FLM--------------EKELEALGKALENP---ERPFVAILGGAKVSDK 199 (389)
T ss_pred ---hhcccchhchhhhCch------hhhh-HHH--------------HHHHHHHHHHhcCC---CCCeEEEEcCccHHhH
Confidence 0111111111111110 0000 101 34566666655422 2222 22 577665
Q ss_pred HhHhhHHHHHHhCCEEEEeC-----------CCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhh-hhcCCCCCh
Q 036921 261 EGLTHFDEILQAADGIILSR-----------GNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDS-MTDNLRPTR 327 (527)
Q Consensus 261 ~av~nldeI~~~sDgImIaR-----------gDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeS-M~~~p~Ptr 327 (527)
-.+ ++.++..+|.+++|- .+.|.++--++....-++|++.|++.|+.+++ ....=+ -.. ..+ +
T Consensus 200 i~v--i~~Ll~~~D~liigG~ma~tFl~A~G~~ig~sl~e~~~i~~a~~il~~a~~~~~~i~lPvD~vv~~~~~-~~~-~ 275 (389)
T PRK00073 200 IGV--LENLLEKVDKLIIGGGMANTFLKAQGYNVGKSLVEEDLIDTAKELLEKAKEKGVKIPLPVDVVVAKEFS-DAE-A 275 (389)
T ss_pred HHH--HHHHHHhhhhheeChHHHHHHHHHcCCCcChhhcchhhHHHHHHHHHHHHhcCCEEECCCeeEEeeccC-CCc-e
Confidence 544 677778889999852 23444443345666778999999999999886 443310 000 011 0
Q ss_pred HhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhh--hhhhhcccCCCCChHHHHHHHHHHHH
Q 036921 328 AEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLY--FKKTVKCVGEPMTHLESIASSAVRAA 405 (527)
Q Consensus 328 aEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~--~~~~~~~~~~~~~~~~~ia~~av~~a 405 (527)
. ..++ +.+- .|...|- +| -++++...+++.+|...+|.-.+ |. .+.-..-+.+++.+..+
T Consensus 276 ~-~~~~-~~ip--~~~~~lD----IG---p~Ti~~~~~~i~~akti~wNGP~GvfE-----~~~F~~GT~~l~~aia~-- 337 (389)
T PRK00073 276 T-VVSV-DEIP--DDWMILD----IG---PKTIELFAEIIKDAKTIVWNGPMGVFE-----FENFAKGTKAVAKAIAE-- 337 (389)
T ss_pred E-EeEc-ccCC--CCCeeee----cC---HHHHHHHHHHHhhCCEEEEECCCCccc-----cccchHHHHHHHHHHHh--
Confidence 0 1111 1111 1222332 34 36888999999999998887432 21 11111234455554332
Q ss_pred HhcCCcEEEEECCCcHHHHHHHhhCCCCCE
Q 036921 406 IKVKASVIICFTSSGRAARLIAKYRPTMPV 435 (527)
Q Consensus 406 ~~~~a~~Ivv~T~sG~tA~~is~~RP~~PI 435 (527)
..|- .+--.|.|+..+.++--.-.+
T Consensus 338 --~~a~---sivGGGdt~aa~~~~g~~~~~ 362 (389)
T PRK00073 338 --STAF---SIIGGGDTAAAVEKLGLADKF 362 (389)
T ss_pred --cCCe---EEEcCCHHHHHHHHcCCCCCc
Confidence 2222 223488899999887554443
No 356
>COG2225 AceB Malate synthase [Energy production and conversion]
Probab=41.09 E-value=49 Score=36.96 Aligned_cols=98 Identities=20% Similarity=0.193 Sum_probs=70.1
Q ss_pred cEEEecCCCCHHHHHHHHHHHHHc----CCC-CCceEEEeecChHhHhhHHHHHHhC-C---EEEEeCCCCcC-------
Q 036921 222 DFLSLSYTRHAEDVRQAREYLSKL----GDL-SQTQIFAKIENIEGLTHFDEILQAA-D---GIILSRGNLGI------- 285 (527)
Q Consensus 222 d~I~~sfV~s~~dv~~lr~~l~~~----~~~-~~~~IiaKIEt~~av~nldeI~~~s-D---gImIaRgDLg~------- 285 (527)
-|+.+|+.++++++.-.-+++... |.+ ..+++-.+||+..+.-|+++|+... | |+=-||=|-.-
T Consensus 220 ~YfylPKm~~p~Ea~f~ndvf~rvEd~LGLprgTiK~~vl~Ee~~a~~~m~eii~~~rer~v~lN~GrwDyigs~Ik~~~ 299 (545)
T COG2225 220 PYFYLPKMEGPEEAAFWNDVFSRVEDTLGLPRGTIKATLLIEERRATLNLDEILYALRDRVVGLNTGRWDYIGSEIKTLM 299 (545)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCceeEeeehhhhhhhhhHHHHHHHHHhhhccccccchhhhhhHHHHhh
Confidence 578999999999998877765422 321 3588999999999999999999875 3 22224433211
Q ss_pred C---CC--------chhHHHHHHHHHHHHHHcCCcEEE-ecchhhh
Q 036921 286 D---LP--------PEKVFLFQKAALYKCNMAGKPAVV-TRVVDSM 319 (527)
Q Consensus 286 e---~~--------~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM 319 (527)
+ +| -+-+-..++..+..|.++|-+..- .|..-=|
T Consensus 300 ~~~~~p~R~~~tm~~p~m~AY~~~nv~~c~~~G~~a~Ggmaa~~~~ 345 (545)
T COG2225 300 EDAVPPDRKGVTMTSPWMGAYEKLNVDTCHKRGAFAMGGMAAGIPM 345 (545)
T ss_pred hhcCCCChhhhhhcCHHHHHHHHHhHHHHHhcCCcccccchhcCCc
Confidence 1 11 135668889999999999998777 7765433
No 357
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=40.87 E-value=2.3e+02 Score=30.05 Aligned_cols=94 Identities=27% Similarity=0.304 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh----CCEEEEeCCCCcCCCCc-hhHHHHHHHHHHHH
Q 036921 229 TRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA----ADGIILSRGNLGIDLPP-EKVFLFQKAALYKC 303 (527)
Q Consensus 229 V~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~----sDgImIaRgDLg~e~~~-~~v~~~qk~Ii~~c 303 (527)
..+.+++.++++.. +.+|+.| ++.+.++...+ +|+|.|. |--|..+.. ..-..+...+....
T Consensus 199 ~~~~~~i~~l~~~~-------~~PvivK-----gv~~~~dA~~a~~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~ 265 (344)
T cd02922 199 TLTWDDIKWLRKHT-------KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHC 265 (344)
T ss_pred CCCHHHHHHHHHhc-------CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHH
Confidence 35677777777643 3578888 33444444443 3898885 222333311 11122333444433
Q ss_pred HHc--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 304 NMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 304 ~~~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
++. ..|+|. ..+ .--.|+..++..|||++.+.
T Consensus 266 ~~~~~~~~vi~~GGI------------r~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 266 PEVFDKIEVYVDGGV------------RRGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred HHhCCCceEEEeCCC------------CCHHHHHHHHHcCCCEEEEC
Confidence 333 478888 654 23579999999999999986
No 358
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=40.82 E-value=58 Score=32.38 Aligned_cols=171 Identities=19% Similarity=0.199 Sum_probs=81.2
Q ss_pred hhHHHHHHhC--CEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCC
Q 036921 264 THFDEILQAA--DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGS 341 (527)
Q Consensus 264 ~nldeI~~~s--DgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~ 341 (527)
+.+++++..+ |+|||| |=+++....+++..+.|+ .+. .+|++. .|... +.+..|+
T Consensus 15 ~~~~~~~~~~gtdai~vG-GS~~v~~~~~~~~~~ik~----~~~-~~Pvil-----------fp~~~------~~i~~~a 71 (219)
T cd02812 15 EEIAKLAEESGTDAIMVG-GSDGVSSTLDNVVRLIKR----IRR-PVPVIL-----------FPSNP------EAVSPGA 71 (219)
T ss_pred HHHHHHHHhcCCCEEEEC-CccchhhhHHHHHHHHHH----hcC-CCCEEE-----------eCCCc------cccCcCC
Confidence 4467777755 999999 555554222333322222 222 699996 45443 3445789
Q ss_pred cEEEeCC-----c-cccCCChHHHHHHHHHHHHHHhh----cc--chhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC
Q 036921 342 DAILLGA-----E-TLRGLYPVETISIVGKICAEAEK----VF--NQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK 409 (527)
Q Consensus 342 D~imLs~-----E-ta~G~yP~e~V~~~~~i~~~aE~----~~--~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~ 409 (527)
|+++.-. . ..+-..-.+++..+.++..--|- ++ +...--.+.. .. .+ +.....+.+-+.+|+.++
T Consensus 72 Da~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~-~a-~~-~~~~e~~~ayA~aae~~g 148 (219)
T cd02812 72 DAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVT-GA-KT-DLKPEDAAAYALAAEYLG 148 (219)
T ss_pred CEEEEEeeecCCCchHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeee-cc-Cc-CCCHHHHHHHHHHHHHcC
Confidence 9987642 1 11111123444433332111111 00 0000000000 01 11 122344555667788888
Q ss_pred CcEEEEECCCcHH-----HHHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecC
Q 036921 410 ASVIICFTSSGRA-----ARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLAD 473 (527)
Q Consensus 410 a~~Ivv~T~sG~t-----A~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~ 473 (527)
-+.+ -+--||.. .+.+++.-..+|++... ..+++..|+++. ..|..-+...
T Consensus 149 ~~iv-yLe~SG~~~~~e~I~~v~~~~~~~pl~vGG-----------GIrs~e~a~~l~-~aGAD~VVVG 204 (219)
T cd02812 149 MPIV-YLEYSGAYGPPEVVRAVKKVLGDTPLIVGG-----------GIRSGEQAKEMA-EAGADTIVVG 204 (219)
T ss_pred CeEE-EeCCCCCcCCHHHHHHHHHhcCCCCEEEeC-----------CCCCHHHHHHHH-HcCCCEEEEC
Confidence 6643 33355543 33344433467888552 156777788753 4455555444
No 359
>PRK06801 hypothetical protein; Provisional
Probab=40.81 E-value=4.3e+02 Score=27.31 Aligned_cols=105 Identities=11% Similarity=0.138 Sum_probs=67.9
Q ss_pred CCceEEEeecChHhHhhHHHHHHhC-CEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCC--C
Q 036921 249 SQTQIFAKIENIEGLTHFDEILQAA-DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNL--R 324 (527)
Q Consensus 249 ~~~~IiaKIEt~~av~nldeI~~~s-DgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p--~ 324 (527)
..+++........-++.+++-++.- +.||+.-- .+|+++-...-+++.+.|+.+|.+|=. -..+-.....+ .
T Consensus 73 ~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S----~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~ 148 (286)
T PRK06801 73 HDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGS----TLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYG 148 (286)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccC
Confidence 4577888887766666665555543 89999533 457888888889999999999998744 22221111100 0
Q ss_pred C----ChHhhhhHHHHH-HhCCcEEEeCCccccCCChH
Q 036921 325 P----TRAEATDVANAV-LDGSDAILLGAETLRGLYPV 357 (527)
Q Consensus 325 P----traEv~Dv~nav-~~g~D~imLs~Eta~G~yP~ 357 (527)
+ ......+...++ .-|+|++-.+-=|+-|+|+-
T Consensus 149 ~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~ 186 (286)
T PRK06801 149 EADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKG 186 (286)
T ss_pred CcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCC
Confidence 0 011123344455 57999999999999999963
No 360
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=40.78 E-value=2.6e+02 Score=28.52 Aligned_cols=145 Identities=19% Similarity=0.276 Sum_probs=80.2
Q ss_pred HhhHHHHHhhcccccccEEEecC----CC-------CHHHHHHHHHHHHHcCCCCCceEEEeecC----hHhHhhHHHHH
Q 036921 206 DKDKEVISSWGVQNKIDFLSLSY----TR-------HAEDVRQAREYLSKLGDLSQTQIFAKIEN----IEGLTHFDEIL 270 (527)
Q Consensus 206 ~~D~~di~~~~~~~g~d~I~~sf----V~-------s~~dv~~lr~~l~~~~~~~~~~IiaKIEt----~~av~nldeI~ 270 (527)
.+|.....+ .++.|+|++=+.+ +. ..+-..++.+.+++. .++++++|+=- ..-..-+.+..
T Consensus 111 ~~d~~~~a~-~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~~---~~~Pv~vKL~p~~~~~~~~~~~~~~~ 186 (295)
T PF01180_consen 111 IEDWAELAK-RLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVREA---VDIPVFVKLSPNFTDIEPFAIAAELA 186 (295)
T ss_dssp HHHHHHHHH-HHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHHH---HSSEEEEEE-STSSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHhc---cCCCEEEEecCCCCchHHHHHHHHhh
Confidence 344444432 2458899886643 21 122333344444433 36899999933 11222222222
Q ss_pred H-hCCEEE----EeCCC-CcCCC-------------CchhHHHHHHHHHHHHHHcC--CcEEE-ecchhhhhcCCCCChH
Q 036921 271 Q-AADGII----LSRGN-LGIDL-------------PPEKVFLFQKAALYKCNMAG--KPAVV-TRVVDSMTDNLRPTRA 328 (527)
Q Consensus 271 ~-~sDgIm----IaRgD-Lg~e~-------------~~~~v~~~qk~Ii~~c~~~g--Kpvi~-Tq~LeSM~~~p~Ptra 328 (527)
+ -.|||. +..++ +-.+. |..-.|.+.+.+-..++..+ .|+|- +.+.
T Consensus 187 ~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~------------ 254 (295)
T PF01180_consen 187 ADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIH------------ 254 (295)
T ss_dssp THTECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--------------
T ss_pred ccceeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcC------------
Confidence 2 238888 55554 22221 12344677787777777777 88887 6643
Q ss_pred hhhhHHHHHHhCCcEEEeCCcc-ccCCChHHHHHHHHHHHHHHhh
Q 036921 329 EATDVANAVLDGSDAILLGAET-LRGLYPVETISIVGKICAEAEK 372 (527)
Q Consensus 329 Ev~Dv~nav~~g~D~imLs~Et-a~G~yP~e~V~~~~~i~~~aE~ 372 (527)
-..|+..+++.|||+|.+..-. -.|. ...++|+++.|+
T Consensus 255 s~~da~e~l~aGA~~Vqv~Sal~~~Gp------~~~~~i~~~L~~ 293 (295)
T PF01180_consen 255 SGEDAIEFLMAGASAVQVCSALIYRGP------GVIRRINRELEE 293 (295)
T ss_dssp SHHHHHHHHHHTESEEEESHHHHHHGT------THHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCHheechhhhhcCc------HHHHHHHHHHHh
Confidence 3468899999999999998333 1132 345556655544
No 361
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=40.76 E-value=1.3e+02 Score=26.09 Aligned_cols=68 Identities=10% Similarity=0.016 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcC
Q 036921 228 YTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAG 307 (527)
Q Consensus 228 fV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~g 307 (527)
-..|.=-+..+++++.++| -+..|.+ -++..+++.+.-.|.|+++| .+.+..+++-+.|...|
T Consensus 10 GaSSs~la~km~~~a~~~g--i~~~i~a-----~~~~e~~~~~~~~Dvill~P----------Qv~~~~~~i~~~~~~~~ 72 (99)
T cd05565 10 GGTSGLLANALNKGAKERG--VPLEAAA-----GAYGSHYDMIPDYDLVILAP----------QMASYYDELKKDTDRLG 72 (99)
T ss_pred CCCHHHHHHHHHHHHHHCC--CcEEEEE-----eeHHHHHHhccCCCEEEEcC----------hHHHHHHHHHHHhhhcC
Confidence 3455556788899998887 4545444 34555667777779999873 67788889999999999
Q ss_pred CcEEE
Q 036921 308 KPAVV 312 (527)
Q Consensus 308 Kpvi~ 312 (527)
+||.+
T Consensus 73 ipv~~ 77 (99)
T cd05565 73 IKLVT 77 (99)
T ss_pred CCEEE
Confidence 99987
No 362
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=40.60 E-value=2.6e+02 Score=27.76 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=53.1
Q ss_pred cEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHH
Q 036921 222 DFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALY 301 (527)
Q Consensus 222 d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~ 301 (527)
..++.|| +++-+..+++.. .++....-.+.. .....+.+...++..+.... ..+...+++
T Consensus 144 ~v~v~SF--~~~~l~~l~~~~------p~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~----------~~~~~~~v~ 203 (249)
T PRK09454 144 PPLLSSF--SEDALEAARQAA------PELPRGLLLDEW--PDDWLELTRRLGCVSLHLNH----------KLLDEARVA 203 (249)
T ss_pred CEEEEeC--CHHHHHHHHHhC------CCCcEEEEeccc--cccHHHHHHhcCCeEEeccc----------ccCCHHHHH
Confidence 4677887 566677666643 333332222321 11223334333433332221 123579999
Q ss_pred HHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 302 KCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 302 ~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
.|+++|+++++ |- -+.++ ...++..|+|+|+-.
T Consensus 204 ~~~~~g~~v~~WTv----------n~~~~---~~~l~~~GVdgIiTD 237 (249)
T PRK09454 204 ALKAAGLRILVYTV----------NDPAR---ARELLRWGVDCICTD 237 (249)
T ss_pred HHHHCCCEEEEEeC----------CCHHH---HHHHHHcCCCEEEeC
Confidence 99999999999 83 23333 456677899998764
No 363
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=40.47 E-value=1.9e+02 Score=27.90 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEe
Q 036921 293 FLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (527)
Q Consensus 293 ~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imL 346 (527)
..+.+..++.++++|+++.+ |- -+.+ +...++..|+|+|+-
T Consensus 176 ~~~~~~~v~~~~~~G~~v~~wtv----------n~~~---~~~~~~~~Gvd~i~T 217 (220)
T cd08579 176 STLNKEFIRQAHQNGKKVYVWTV----------NDPD---DMQRYLAMGVDGIIT 217 (220)
T ss_pred hhcCHHHHHHHHHCCCEEEEEcC----------CCHH---HHHHHHHcCCCEEeC
Confidence 34567899999999999999 72 1223 346677789999864
No 364
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=40.22 E-value=4.2e+02 Score=27.07 Aligned_cols=93 Identities=10% Similarity=0.063 Sum_probs=57.9
Q ss_pred hhccccc-ccEEEec------CCCCHHHHHHHHHH-HHHcCCCCCceEEEeec---ChHhHhhHHHHHHh-CCEEEEeCC
Q 036921 214 SWGVQNK-IDFLSLS------YTRHAEDVRQAREY-LSKLGDLSQTQIFAKIE---NIEGLTHFDEILQA-ADGIILSRG 281 (527)
Q Consensus 214 ~~~~~~g-~d~I~~s------fV~s~~dv~~lr~~-l~~~~~~~~~~IiaKIE---t~~av~nldeI~~~-sDgImIaRg 281 (527)
++.++.| +|+|++. +.=|.++-.++-+. .+..+ .++.|++.+- +.++++....--+. +||+|+.+-
T Consensus 28 ~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~--~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P 105 (290)
T TIGR00683 28 RHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK--DQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTP 105 (290)
T ss_pred HHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC--CCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 4778999 9999876 55566666666554 34444 5688999985 34444444443333 399999765
Q ss_pred CCcCCCCchhHHHHHHHHHHHHHHc-CCcEEE
Q 036921 282 NLGIDLPPEKVFLFQKAALYKCNMA-GKPAVV 312 (527)
Q Consensus 282 DLg~e~~~~~v~~~qk~Ii~~c~~~-gKpvi~ 312 (527)
..- ....+++...-+.+.+ +. +.|+++
T Consensus 106 ~y~-~~~~~~i~~yf~~v~~---~~~~lpv~l 133 (290)
T TIGR00683 106 FYY-KFSFPEIKHYYDTIIA---ETGGLNMIV 133 (290)
T ss_pred cCC-CCCHHHHHHHHHHHHh---hCCCCCEEE
Confidence 432 2233555555555554 34 689887
No 365
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=40.19 E-value=3.3e+02 Score=27.87 Aligned_cols=94 Identities=16% Similarity=0.094 Sum_probs=54.8
Q ss_pred HHHHHHh--CCEEEEeCCCC--cCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhH-HHHHHh
Q 036921 266 FDEILQA--ADGIILSRGNL--GIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDV-ANAVLD 339 (527)
Q Consensus 266 ldeI~~~--sDgImIaRgDL--g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv-~nav~~ 339 (527)
++..++. .|||++. |=- +..+..++-..+.+..++.+. ...|+++ +- ..+-.|.-+. -.|...
T Consensus 27 i~~~i~~G~v~gi~~~-GstGE~~~Lt~eEr~~~~~~~~~~~~-~~~pvi~gv~---------~~~t~~~i~la~~a~~~ 95 (290)
T TIGR00683 27 IRHNIDKMKVDGLYVG-GSTGENFMLSTEEKKEIFRIAKDEAK-DQIALIAQVG---------SVNLKEAVELGKYATEL 95 (290)
T ss_pred HHHHHhCCCcCEEEEC-CcccccccCCHHHHHHHHHHHHHHhC-CCCcEEEecC---------CCCHHHHHHHHHHHHHh
Confidence 4444443 6898885 222 234455554455555555442 2468887 43 2233444443 346788
Q ss_pred CCcEEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 340 GSDAILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 340 g~D~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
|+|++|+..=.-...-+.+.+...+.++.++
T Consensus 96 Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~ 126 (290)
T TIGR00683 96 GYDCLSAVTPFYYKFSFPEIKHYYDTIIAET 126 (290)
T ss_pred CCCEEEEeCCcCCCCCHHHHHHHHHHHHhhC
Confidence 9999999654333334577888888888764
No 366
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=40.11 E-value=95 Score=28.22 Aligned_cols=52 Identities=17% Similarity=0.301 Sum_probs=37.8
Q ss_pred HhHhhHHHHHHh--CC--EEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 261 EGLTHFDEILQA--AD--GIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 261 ~av~nldeI~~~--sD--gImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
.+++++++.+.. .| -|++|-.|+.-..+.+++..--+++++.+++.+.++++
T Consensus 51 ~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil 106 (177)
T cd01822 51 GGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLL 106 (177)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 344555554443 36 45557788766677888888888999999999999887
No 367
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=40.00 E-value=75 Score=32.93 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=45.6
Q ss_pred EEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCce
Q 036921 31 KIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLC 87 (527)
Q Consensus 31 kIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v 87 (527)
.+..=+-. + +.+.+++.+++|.+..=|..||.+.++..+.-..+++.++.+|.++
T Consensus 79 PV~lHLDH-~-~~~~i~~ai~~GftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~v 133 (293)
T PRK07315 79 PVAIHLDH-G-HYEDALECIEVGYTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISV 133 (293)
T ss_pred cEEEECCC-C-CHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 44554533 4 7899999999999999999999999999999999999888877544
No 368
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=39.93 E-value=82 Score=32.26 Aligned_cols=61 Identities=15% Similarity=0.083 Sum_probs=39.6
Q ss_pred EecCCCCCCHHHHHHHHHcCCCeEEeec-----------CCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 036921 34 GTLGPKSRSVDVISGCLKAGMSVARFDF-----------SWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGP 96 (527)
Q Consensus 34 ~TiGp~~~~~~~l~~l~~~G~~v~RiN~-----------shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp 96 (527)
.|+ |=..++|.-++|.++|+|+.=.++ ..-+.++..+.++.+.+++++.+..+-++.- -||
T Consensus 152 ~T~-~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~h-GGP 223 (268)
T PF09370_consen 152 FTT-AYVFNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCH-GGP 223 (268)
T ss_dssp EE---EE-SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEE-CTT
T ss_pred eee-eeecCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEe-CCC
Confidence 455 445689999999999999999888 3456688889999999998877765544443 444
No 369
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=39.79 E-value=4.6e+02 Score=27.33 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=18.0
Q ss_pred CCCHhhHHHHHh-------hcccccccEEEec
Q 036921 203 TLSDKDKEVISS-------WGVQNKIDFLSLS 227 (527)
Q Consensus 203 ~lt~~D~~di~~-------~~~~~g~d~I~~s 227 (527)
.+|+.|++.+.+ .+.+.|+|+|=+.
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~ 174 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIH 174 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 588888776642 4567899999664
No 370
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=39.59 E-value=33 Score=35.82 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=44.8
Q ss_pred HHHHHHHcCCcEEEe---------cchhhhhc----CCCCChHhhhhHHHHHHhCCcEEEeCCccccCC--ChHHHHHHH
Q 036921 299 ALYKCNMAGKPAVVT---------RVVDSMTD----NLRPTRAEATDVANAVLDGSDAILLGAETLRGL--YPVETISIV 363 (527)
Q Consensus 299 Ii~~c~~~gKpvi~T---------q~LeSM~~----~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~--yP~e~V~~~ 363 (527)
.+.+|+++|.||+-| +.++.|.+ ...|....+.+++.. -|+||.++.-||..+. ..-..+..+
T Consensus 47 widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~--yGFDGw~iN~E~~~~~~~~~~~l~~F~ 124 (311)
T PF03644_consen 47 WIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKY--YGFDGWLINIETPLSGPEDAENLIDFL 124 (311)
T ss_dssp HHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHH--HT--EEEEEEEESSTTGGGHHHHHHHH
T ss_pred hHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHH--cCCCceEEEecccCCchhHHHHHHHHH
Confidence 579999999998622 23445555 223333334555554 5999999999999985 667777777
Q ss_pred HHHHHHHhh
Q 036921 364 GKICAEAEK 372 (527)
Q Consensus 364 ~~i~~~aE~ 372 (527)
+.+-+++.+
T Consensus 125 ~~l~~~~~~ 133 (311)
T PF03644_consen 125 KYLRKEAHE 133 (311)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 777777777
No 371
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=39.56 E-value=3.5e+02 Score=26.18 Aligned_cols=140 Identities=14% Similarity=0.152 Sum_probs=68.6
Q ss_pred hcccccccEEEecCC-----CCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCCcCCCC
Q 036921 215 WGVQNKIDFLSLSYT-----RHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNLGIDLP 288 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV-----~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~ 288 (527)
...+.|+|.+.+.-. ....+...++++....+ -.+.+-.-|-+.+-+ +++++. +|.+++++.=|.
T Consensus 37 ~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~--~pv~~~GgI~~~e~~---~~~~~~Gad~vvigs~~l~---- 107 (234)
T cd04732 37 KWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVG--IPVQVGGGIRSLEDI---ERLLDLGVSRVIIGTAAVK---- 107 (234)
T ss_pred HHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcC--CCEEEeCCcCCHHHH---HHHHHcCCCEEEECchHHh----
Confidence 335789988777632 23345555555544332 234444466664444 444444 599999865442
Q ss_pred chhHHHHHHHHHHHHHHcCC-cEEE-ecchhh-hhcCC--CCChHhhhhHHH-HHHhCCcEEEeCCccccCCChHHHHHH
Q 036921 289 PEKVFLFQKAALYKCNMAGK-PAVV-TRVVDS-MTDNL--RPTRAEATDVAN-AVLDGSDAILLGAETLRGLYPVETISI 362 (527)
Q Consensus 289 ~~~v~~~qk~Ii~~c~~~gK-pvi~-Tq~LeS-M~~~p--~PtraEv~Dv~n-av~~g~D~imLs~Eta~G~yP~e~V~~ 362 (527)
+ |...+++ +++.|+ ++++ -.+-.+ ..... ..+.-+..+.+. +...|+|.+.+.+-+..|.+.-.-.+.
T Consensus 108 --d-p~~~~~i---~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~ 181 (234)
T cd04732 108 --N-PELVKEL---LKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFEL 181 (234)
T ss_pred --C-hHHHHHH---HHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHH
Confidence 1 2333333 334565 3333 211100 00000 011112233333 445689999998766666543333455
Q ss_pred HHHHHHH
Q 036921 363 VGKICAE 369 (527)
Q Consensus 363 ~~~i~~~ 369 (527)
+.++++.
T Consensus 182 i~~i~~~ 188 (234)
T cd04732 182 YKELAAA 188 (234)
T ss_pred HHHHHHh
Confidence 5555543
No 372
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=39.43 E-value=64 Score=32.15 Aligned_cols=176 Identities=18% Similarity=0.160 Sum_probs=91.4
Q ss_pred HhHhhHHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHh
Q 036921 261 EGLTHFDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLD 339 (527)
Q Consensus 261 ~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~ 339 (527)
...+.++.+.+. .|+|||| |=+++. .++ -..++++.+++.+|+++ .|.. .+.+..
T Consensus 15 ~~~~~~~~~~~~gtdai~vG-GS~~vt--~~~----~~~~v~~ik~~~lPvil-----------fp~~------~~~i~~ 70 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIG-GSQGVT--YEK----TDTLIEALRRYGLPIIL-----------FPSN------PTNVSR 70 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEc-CCCccc--HHH----HHHHHHHHhccCCCEEE-----------eCCC------ccccCc
Confidence 355566777766 5999998 433322 122 34566777788899996 3322 234456
Q ss_pred CCcEEEeCC-----c-cccCCChHHHHHHHHHHHHH--Hhhc--cchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC
Q 036921 340 GSDAILLGA-----E-TLRGLYPVETISIVGKICAE--AEKV--FNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK 409 (527)
Q Consensus 340 g~D~imLs~-----E-ta~G~yP~e~V~~~~~i~~~--aE~~--~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~ 409 (527)
++|+++.-. . ..+-..-.+++..+.+...+ -|.+ ++...--.+.....+.|.+..+ ++..+.-+++-.+
T Consensus 71 ~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~-~aa~~~lA~~~~g 149 (223)
T TIGR01768 71 DADALFFPSVLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKED-LAAYAAMAEEMLG 149 (223)
T ss_pred CCCEEEEEEeecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHH-HHHHHHHHHHHcC
Confidence 899987632 1 12222235555555544311 0111 1111000011111223344444 4444555556678
Q ss_pred CcEEEEECCCcH-------HHHHHHhhCCCCCEEEEeeccccccccccccCcHHHHHhhccccccEEEecC
Q 036921 410 ASVIICFTSSGR-------AARLIAKYRPTMPVLSVVIPRLKTNQLKWSFSGAFEARQSLIVRGLFPMLAD 473 (527)
Q Consensus 410 a~~Ivv~T~sG~-------tA~~is~~RP~~PIiAv~~~~~~~~~~~~~t~~~~~aR~L~L~~GV~P~l~~ 473 (527)
-+.+..--.||. ..+.+.+.-..+|++... ..+++..++++. ..|.--+...
T Consensus 150 ~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGG-----------GIrs~e~a~~l~-~aGAD~VVVG 208 (223)
T TIGR01768 150 MPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGG-----------GIRSVEKAREMA-EAGADTIVTG 208 (223)
T ss_pred CcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEec-----------CCCCHHHHHHHH-HcCCCEEEEC
Confidence 886666534332 345555555678996441 156788888753 4466555554
No 373
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=39.40 E-value=1.6e+02 Score=31.39 Aligned_cols=78 Identities=21% Similarity=0.257 Sum_probs=50.3
Q ss_pred HhhHHHHHHh-CCEEEEeCCCCcCCCCch--hHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHh--hhhHHHH
Q 036921 263 LTHFDEILQA-ADGIILSRGNLGIDLPPE--KVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAE--ATDVANA 336 (527)
Q Consensus 263 v~nldeI~~~-sDgImIaRgDLg~e~~~~--~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraE--v~Dv~na 336 (527)
++.+...++. +|+|.+|=-+++.--... .... -+++++.|+++||-+.+ .+.+ | .+..-| ...+..+
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~-l~e~i~~ah~~gkk~~V~~N~~--~----~~~~~~~~~~~l~~l 88 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVED-LAEAVELAHSAGKKVYVAVNTL--L----HNDELETLERYLDRL 88 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHH-HHHHHHHHHHcCCeEEEEeccc--c----ccchhhHHHHHHHHH
Confidence 3444444444 699999955666655441 1222 56889999999998877 5443 1 222222 2456667
Q ss_pred HHhCCcEEEeC
Q 036921 337 VLDGSDAILLG 347 (527)
Q Consensus 337 v~~g~D~imLs 347 (527)
+..|+|+|.++
T Consensus 89 ~e~GvDaviv~ 99 (347)
T COG0826 89 VELGVDAVIVA 99 (347)
T ss_pred HHcCCCEEEEc
Confidence 88899999998
No 374
>PLN02979 glycolate oxidase
Probab=39.36 E-value=1.6e+02 Score=31.64 Aligned_cols=91 Identities=24% Similarity=0.204 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHH---h-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHH
Q 036921 230 RHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQ---A-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNM 305 (527)
Q Consensus 230 ~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~---~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~ 305 (527)
-|-+|+..+|+. .+.+||.|- |.+.++... . +|||.|+-.. |-.+. ..+.....+.+..++
T Consensus 210 ltW~dl~wlr~~-------~~~PvivKg-----V~~~~dA~~a~~~Gvd~I~VsnhG-Grqld--~~p~t~~~L~ei~~~ 274 (366)
T PLN02979 210 LSWKDVQWLQTI-------TKLPILVKG-----VLTGEDARIAIQAGAAGIIVSNHG-ARQLD--YVPATISALEEVVKA 274 (366)
T ss_pred CCHHHHHHHHhc-------cCCCEEeec-----CCCHHHHHHHHhcCCCEEEECCCC-cCCCC--CchhHHHHHHHHHHH
Confidence 356777777763 345677763 222333222 2 4888883211 11111 112222222222222
Q ss_pred --cCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 306 --AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 306 --~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
...|+|. ..+ -.-.|++.|+..|||++++.
T Consensus 275 ~~~~~~Vi~dGGI------------r~G~Di~KALALGAdaV~iG 307 (366)
T PLN02979 275 TQGRIPVFLDGGV------------RRGTDVFKALALGASGIFIG 307 (366)
T ss_pred hCCCCeEEEeCCc------------CcHHHHHHHHHcCCCEEEEc
Confidence 2378888 653 24589999999999999986
No 375
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=39.25 E-value=1.1e+02 Score=30.62 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=40.7
Q ss_pred CCeEEEEecCCCC-CCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 036921 28 AMTKIVGTLGPKS-RSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTV 94 (527)
Q Consensus 28 ~~tkIi~TiGp~~-~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~ 94 (527)
.+..+-+|+|..+ ...+..+++.+.|.+.|.+.+...+.++-.+.++.+|++ .|..+.+++|-.
T Consensus 71 ~~v~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~~~~~d~~~v~~vr~~---~g~~~~l~vDaN 135 (263)
T cd03320 71 NRIPVNALLPAGDAAALGEAKAAYGGGYRTVKLKVGATSFEEDLARLRALREA---LPADAKLRLDAN 135 (263)
T ss_pred cCcceeEEecCCCHHHHHHHHHHHhCCCCEEEEEECCCChHHHHHHHHHHHHH---cCCCCeEEEeCC
Confidence 3455567776543 233567778899999999998765655555556566543 554455555554
No 376
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.22 E-value=1.1e+02 Score=31.83 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=46.1
Q ss_pred hHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHh--HhhHHHHHHh-CCEEEEeC
Q 036921 208 DKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEG--LTHFDEILQA-ADGIILSR 280 (527)
Q Consensus 208 D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~a--v~nldeI~~~-sDgImIaR 280 (527)
+.+.+. .+++.|+|+|.+-. -++++++++.+.++..+ .++.+.| .-| .+|+.+.++. .|+|-++.
T Consensus 205 tleea~-eA~~~GaD~I~LDn-~~~e~l~~av~~~~~~~--~~i~leA----sGGIt~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 205 TLEQVQ-EALEYGADIIMLDN-MPVDLMQQAVQLIRQQN--PRVKIEA----SGNITLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CHHHHH-HHHHcCCCEEEECC-CCHHHHHHHHHHHHhcC--CCeEEEE----ECCCCHHHHHHHHHcCCCEEEEch
Confidence 455554 46899999999995 67799999888876544 4554444 233 4677888877 59999864
No 377
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=39.05 E-value=69 Score=35.05 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=67.7
Q ss_pred cccccEEEecCCCCHHHHHHHHHHHHHc---------CC----------CCCceEEEeecChHhHhhHHHHHHhC----C
Q 036921 218 QNKIDFLSLSYTRHAEDVRQAREYLSKL---------GD----------LSQTQIFAKIENIEGLTHFDEILQAA----D 274 (527)
Q Consensus 218 ~~g~d~I~~sfV~s~~dv~~lr~~l~~~---------~~----------~~~~~IiaKIEt~~av~nldeI~~~s----D 274 (527)
-.++-.|++||..|++++..+.+++... |. ++.+.+|..+|+.+++-+...|.... |
T Consensus 122 ~~pIfEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~P~~IeviPl~e~~~~ll~a~~i~~~y~~g~~ 201 (488)
T COG1892 122 VAPIFEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFIPKLIEVIPLFEDRESLLKAALIVGEYAEGRD 201 (488)
T ss_pred cccceeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhccccHHHHhhhHhHhhHHHHHHHHHHHHHHHhcCC
Confidence 3467789999999999999997765321 10 12455777888888888888887653 2
Q ss_pred ----EEEEeCCCCcCCCCch----hHHHHHHHHHHHHHHcCCcEE
Q 036921 275 ----GIILSRGNLGIDLPPE----KVFLFQKAALYKCNMAGKPAV 311 (527)
Q Consensus 275 ----gImIaRgDLg~e~~~~----~v~~~qk~Ii~~c~~~gKpvi 311 (527)
-|++||.|=++.+|.- -+-.+-.++-+.-.+.|.|+.
T Consensus 202 ~e~~RVFLarSDpAmnyG~laA~l~~K~AL~~l~el~ee~~~~i~ 246 (488)
T COG1892 202 PEYLRVFLARSDPAMNYGHLAAVLAVKKALSELSELSEELGVPIY 246 (488)
T ss_pred chhheeeeecCchhhccchHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 7999999999999974 233444566666677788753
No 378
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=38.91 E-value=87 Score=32.61 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=41.8
Q ss_pred CeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 036921 29 MTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTV 94 (527)
Q Consensus 29 ~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~ 94 (527)
.+.+-.+|+......+.++++.+.|.+.+.+.....+.++-.+.++.+|++ .|..+.|++|-.
T Consensus 109 ~~~~~~~i~~~~~~~~~a~~~~~~G~~~~KvKvG~~~~~~d~~~v~air~~---~g~~~~l~vDaN 171 (320)
T PRK02714 109 PLSYSALLPAGEAALQQWQTLWQQGYRTFKWKIGVDPLEQELKIFEQLLER---LPAGAKLRLDAN 171 (320)
T ss_pred CCceeeecCCCHHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHh---cCCCCEEEEECC
Confidence 466667776543345677778899999999998766666556666666654 454455555544
No 379
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=38.78 E-value=4.8e+02 Score=27.25 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCHhhHHHHHh-------hcccccccEEEe-------------cCCCCH----------------HHHHHHHHHHHHcC
Q 036921 203 TLSDKDKEVISS-------WGVQNKIDFLSL-------------SYTRHA----------------EDVRQAREYLSKLG 246 (527)
Q Consensus 203 ~lt~~D~~di~~-------~~~~~g~d~I~~-------------sfV~s~----------------~dv~~lr~~l~~~~ 246 (527)
.+|..|++.+.+ .+.+.|+|+|=+ |..+.. +-|+++|+.++
T Consensus 138 ~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG--- 214 (338)
T cd04733 138 AMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVG--- 214 (338)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcC---
Q ss_pred CCCCceEEEee----------cChHhHhhHHHHHHh-CCEEEEeCCCCcCCC-------CchhHHHHHHHHHHHHHHc-C
Q 036921 247 DLSQTQIFAKI----------ENIEGLTHFDEILQA-ADGIILSRGNLGIDL-------PPEKVFLFQKAALYKCNMA-G 307 (527)
Q Consensus 247 ~~~~~~IiaKI----------Et~~av~nldeI~~~-sDgImIaRgDLg~e~-------~~~~v~~~qk~Ii~~c~~~-g 307 (527)
.+..|..+| .-.++++-+..+.+. .|.|-|..|-..-.. +...-...+....+..+++ +
T Consensus 215 --~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~ 292 (338)
T cd04733 215 --PGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTK 292 (338)
T ss_pred --CCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcC
Q ss_pred CcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhC-CcEEEeC
Q 036921 308 KPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDG-SDAILLG 347 (527)
Q Consensus 308 Kpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g-~D~imLs 347 (527)
.||+. ..+ ....+...++..| +|.|++.
T Consensus 293 iPVi~~G~i------------~t~~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 293 TPLMVTGGF------------RTRAAMEQALASGAVDGIGLA 322 (338)
T ss_pred CCEEEeCCC------------CCHHHHHHHHHcCCCCeeeeC
No 380
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=38.74 E-value=1e+02 Score=29.22 Aligned_cols=45 Identities=16% Similarity=0.185 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCce
Q 036921 43 VDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLC 87 (527)
Q Consensus 43 ~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v 87 (527)
.+.+++++++|++.+.+..-+.+..+..+.+..++..++.++.++
T Consensus 16 ~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~~~l 60 (196)
T TIGR00693 16 LNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYGVPF 60 (196)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhCCeE
Confidence 567889999999999999988888889999999999888776443
No 381
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=38.65 E-value=3.3e+02 Score=26.39 Aligned_cols=104 Identities=15% Similarity=0.242 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHh-cCCcEEEEECCCcH--HHHHHHh-----h---CCCCCEEEEeeccc----cccccccccCcHHHHH
Q 036921 395 ESIASSAVRAAIK-VKASVIICFTSSGR--AARLIAK-----Y---RPTMPVLSVVIPRL----KTNQLKWSFSGAFEAR 459 (527)
Q Consensus 395 ~~ia~~av~~a~~-~~a~~Ivv~T~sG~--tA~~is~-----~---RP~~PIiAv~~~~~----~~~~~~~~t~~~~~aR 459 (527)
+.+..++-.++.. .++.-|+++-..|. .|+-++. | ||..|.++++.-.. .+|...| +...+|
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~---~~~f~~ 101 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLH---DEVYAK 101 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccH---HHHHHH
Confidence 4555555555554 46777888876655 3665653 2 99999998721000 0000111 233456
Q ss_pred hhc--cccccEEEecCCCCCCCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEEec
Q 036921 460 QSL--IVRGLFPMLADPRHPAESTNATNESVLKVALDHGKASGVIKSHDRVVVCQKV 514 (527)
Q Consensus 460 ~L~--L~~GV~P~l~~~~~~~~~~~~~~e~~i~~a~~~a~e~g~v~~GD~VVvv~g~ 514 (527)
|+. +..|=.-+..... .+.+++ ..+++.|+++| -++|.++|.
T Consensus 102 ql~~~~~~gDvli~iS~S-------G~s~~v-~~a~~~Ak~~G-----~~vI~IT~~ 145 (196)
T PRK10886 102 QVRALGHAGDVLLAISTR-------GNSRDI-VKAVEAAVTRD-----MTIVALTGY 145 (196)
T ss_pred HHHHcCCCCCEEEEEeCC-------CCCHHH-HHHHHHHHHCC-----CEEEEEeCC
Confidence 554 3345444444433 234443 45788888865 467777775
No 382
>PRK08639 threonine dehydratase; Validated
Probab=38.60 E-value=3.7e+02 Score=29.10 Aligned_cols=119 Identities=15% Similarity=0.213 Sum_probs=68.1
Q ss_pred HHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcE--EEeCCccccCCChHHHHHHHHHHHHHHhhcc
Q 036921 297 KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDA--ILLGAETLRGLYPVETISIVGKICAEAEKVF 374 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~--imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~ 374 (527)
.-+...|+..|.|+.+- .|..+--..+...-..|++. +.+. |...-++++...+++++ +. .
T Consensus 86 ~alA~~a~~~G~~~~Iv----------mP~~~~~~k~~~~r~~GA~vv~v~~~-----g~~~~~a~~~a~~~a~~-~g-~ 148 (420)
T PRK08639 86 QGVAYACRHLGIPGVIF----------MPVTTPQQKIDQVRFFGGEFVEIVLV-----GDTFDDSAAAAQEYAEE-TG-A 148 (420)
T ss_pred HHHHHHHHHcCCCEEEE----------ECCCChHHHHHHHHHcCCCeeEEEEe-----CcCHHHHHHHHHHHHHh-cC-C
Confidence 45667899999998871 13333233344445569984 3343 44456776666555443 11 2
Q ss_pred chhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC----CcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 375 NQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK----ASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~----a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
.|-..|.+ + .....-..-+.++.++++ .++||+..-+|.++.-+++ .+|.+.|+++-+
T Consensus 149 ~~~~~~~~-------~-~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep 214 (420)
T PRK08639 149 TFIPPFDD-------P-DVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEP 214 (420)
T ss_pred cccCCCCC-------h-hHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 22111211 0 011111233566666664 6899999999988655554 479999999854
No 383
>PLN00011 cysteine synthase
Probab=38.55 E-value=4.7e+02 Score=27.13 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchh
Q 036921 298 AALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQD 377 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~ 377 (527)
-+...|+..|.|+.+ + .|..+.-..+...-..|++.++-..+ .+ .-+.++...++.++. ..+.+.
T Consensus 83 alA~~a~~~G~~~~i--v--------vp~~~~~~k~~~i~~~GA~V~~~~~~--~~--~~~~~~~a~~l~~~~-~~~~~~ 147 (323)
T PLN00011 83 GLACIGAARGYKVIL--V--------MPSTMSLERRIILRALGAEVHLTDQS--IG--LKGMLEKAEEILSKT-PGGYIP 147 (323)
T ss_pred HHHHHHHHcCCeEEE--E--------eCCCCCHHHHHHHHHcCCEEEEECCC--cC--hHHHHHHHHHHHHhC-CCeEEe
Confidence 455689999999886 1 12222223444555579998875532 11 123344444443321 111111
Q ss_pred hhhhhhhcccCCCCChHHHHHHHHHHHHHhc--CCcEEEEECCCcHHHHHHH----hhCCCCCEEEEee
Q 036921 378 LYFKKTVKCVGEPMTHLESIASSAVRAAIKV--KASVIICFTSSGRAARLIA----KYRPTMPVLSVVI 440 (527)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~--~a~~Ivv~T~sG~tA~~is----~~RP~~PIiAv~~ 440 (527)
..|. .+.++.--....+.++.++. +.++||+.+-+|.|..-++ .++|...|+++-+
T Consensus 148 ~~~~-------n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~ 209 (323)
T PLN00011 148 QQFE-------NPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEP 209 (323)
T ss_pred cccc-------CCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEec
Confidence 1111 11122111233456666664 4899999999998865544 4689999999854
No 384
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=38.48 E-value=1.1e+02 Score=31.95 Aligned_cols=63 Identities=14% Similarity=0.271 Sum_probs=50.6
Q ss_pred CCeEEEEecCCCCC----C--------------HHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEE
Q 036921 28 AMTKIVGTLGPKSR----S--------------VDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAV 89 (527)
Q Consensus 28 ~~tkIi~TiGp~~~----~--------------~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i 89 (527)
|++-+.+||||-.. + .|.++.|++.|+|++-|--... ..+.+..+.-+|++.++.|..+++
T Consensus 113 k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D-~l~~KaA~~a~~~~~~~~~~~LPv 191 (311)
T COG0646 113 KPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFD-TLNAKAAVFAAREVFEELGVRLPV 191 (311)
T ss_pred CceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhcc-HHHHHHHHHHHHHHHHhcCCcccE
Confidence 67889999999763 1 3778899999999999986654 466888899999999888877766
Q ss_pred Ee
Q 036921 90 ML 91 (527)
Q Consensus 90 ~~ 91 (527)
++
T Consensus 192 ~~ 193 (311)
T COG0646 192 MI 193 (311)
T ss_pred EE
Confidence 64
No 385
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=38.23 E-value=2.4e+02 Score=28.79 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=54.7
Q ss_pred HHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhC--CEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ec
Q 036921 238 AREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAA--DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TR 314 (527)
Q Consensus 238 lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~s--DgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq 314 (527)
+++.|.... .-...+..+-++. +-||+..+ |.++|. .|=+.-.+..++ .++.+|+..|.+.++ ..
T Consensus 9 lk~~L~~G~--~~~G~~~~~~sp~----~~E~~a~~GfD~v~iD-----~EHg~~~~~~l~-~~i~a~~~~g~~~lVRvp 76 (267)
T PRK10128 9 FKEGLRKGE--VQIGLWLSSTTSY----MAEIAATSGYDWLLID-----GEHAPNTIQDLY-HQLQAIAPYASQPVIRPV 76 (267)
T ss_pred HHHHHHcCC--ceEEEEecCCCcH----HHHHHHHcCCCEEEEc-----cccCCCCHHHHH-HHHHHHHhcCCCeEEECC
Confidence 555555421 2234556665554 34556555 999995 344443444443 578888899999887 32
Q ss_pred chhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 315 VVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 315 ~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
.+ +-..+..++..|+++||+-
T Consensus 77 ---------~~---~~~~i~r~LD~GA~GIivP 97 (267)
T PRK10128 77 ---------EG---SKPLIKQVLDIGAQTLLIP 97 (267)
T ss_pred ---------CC---CHHHHHHHhCCCCCeeEec
Confidence 33 3366678888999999996
No 386
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=38.18 E-value=1.1e+02 Score=28.44 Aligned_cols=43 Identities=14% Similarity=0.171 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCC
Q 036921 43 VDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKK 85 (527)
Q Consensus 43 ~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~ 85 (527)
.+.+++++++|++.+-|..-.++..+..+.++.+++..+.++.
T Consensus 15 ~~~l~~l~~~g~~~i~lr~~~~~~~~~~~~~~~i~~~~~~~~~ 57 (196)
T cd00564 15 LEVVEAALKGGVTLVQLREKDLSARELLELARALRELCRKYGV 57 (196)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 5779999999999999999999988888888888877665553
No 387
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=38.17 E-value=4.5e+02 Score=27.65 Aligned_cols=125 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred CCCCHhhHHHHHh-------hcccccccEEEecCCC-------------------------CHHHHHHHHHHHHHc-CCC
Q 036921 202 PTLSDKDKEVISS-------WGVQNKIDFLSLSYTR-------------------------HAEDVRQAREYLSKL-GDL 248 (527)
Q Consensus 202 p~lt~~D~~di~~-------~~~~~g~d~I~~sfV~-------------------------s~~dv~~lr~~l~~~-~~~ 248 (527)
..+|..|++.+.+ .+.+.|+|+|=+.+.. ...-+.++.+.+++. |
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg-- 217 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIG-- 217 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhC--
Q ss_pred CCceEEEee-------------cChHhHhhHHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHc-CCcEEE-
Q 036921 249 SQTQIFAKI-------------ENIEGLTHFDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMA-GKPAVV- 312 (527)
Q Consensus 249 ~~~~IiaKI-------------Et~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~-gKpvi~- 312 (527)
.+ .|..|| .-.+.++-+..+.+. .|.|=|..|...-.. ...+-...+..+++ +.||+.
T Consensus 218 ~d-~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~-----~~~~~~~~~~ik~~~~ipvi~~ 291 (338)
T cd02933 218 AD-RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNP-----EDQPPDFLDFLRKAFKGPLIAA 291 (338)
T ss_pred CC-ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcc-----cccchHHHHHHHHHcCCCEEEE
Q ss_pred ecchhhhhcCCCCChHhhhhHHHHHHhC-CcEEEeC
Q 036921 313 TRVVDSMTDNLRPTRAEATDVANAVLDG-SDAILLG 347 (527)
Q Consensus 313 Tq~LeSM~~~p~PtraEv~Dv~nav~~g-~D~imLs 347 (527)
..+ .|..+ ..++..| +|.|+++
T Consensus 292 G~i--------~~~~a-----~~~l~~g~~D~V~~g 314 (338)
T cd02933 292 GGY--------DAESA-----EAALADGKADLVAFG 314 (338)
T ss_pred CCC--------CHHHH-----HHHHHcCCCCEEEeC
No 388
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=38.14 E-value=5e+02 Score=27.99 Aligned_cols=118 Identities=16% Similarity=0.216 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchh
Q 036921 298 AALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQD 377 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~ 377 (527)
-+...|+..|.|+.+. .|..+.-..+.+.-..|++.+...+ ..-++.+.+.++.++ +.++...
T Consensus 127 alA~~aa~~Gi~~~Iv----------vP~~~~~~K~~~ir~~GAeVi~~~~------~~~~a~~~a~~~a~~-~g~~~v~ 189 (396)
T TIGR03528 127 GVAWAANQLGQKSVVY----------MPKGSAQIRLENIRAEGAECTITDL------NYDDAVRLAWKMAQE-NGWVMVQ 189 (396)
T ss_pred HHHHHHHHcCCCEEEE----------EeCCCcHHHHHHHHhcCCEEEEECC------CHHHHHHHHHHHHHh-cCcEeec
Confidence 5667899999998871 1322323455666778999776642 346777777777654 1211111
Q ss_pred h----hhhhhhcccCCCCChHHHHHHHHHHHHHhcC------CcEEEEECCCcHHHHHHHh-----hCCCCC-EEEE
Q 036921 378 L----YFKKTVKCVGEPMTHLESIASSAVRAAIKVK------ASVIICFTSSGRAARLIAK-----YRPTMP-VLSV 438 (527)
Q Consensus 378 ~----~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~------a~~Ivv~T~sG~tA~~is~-----~RP~~P-IiAv 438 (527)
. .|++ .+....+-....+.++..+++ .+.||+.+-+|.++-.++. ++|..| |+++
T Consensus 190 ~~~~~~~~~------~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~V 260 (396)
T TIGR03528 190 DTAWEGYEK------IPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIV 260 (396)
T ss_pred ccccccccc------CchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEE
Confidence 0 0110 011112222334555555553 6889998888876544443 367765 7776
No 389
>PRK08198 threonine dehydratase; Provisional
Probab=37.95 E-value=5.3e+02 Score=27.55 Aligned_cols=153 Identities=16% Similarity=0.272 Sum_probs=84.2
Q ss_pred ceEEEeecChHhH--------hh-HHHHHHh--CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhh
Q 036921 251 TQIFAKIENIEGL--------TH-FDEILQA--ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSM 319 (527)
Q Consensus 251 ~~IiaKIEt~~av--------~n-ldeI~~~--sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM 319 (527)
..|+.|.|+.+-. -| +....+. .++|+.+- -| ..=.-+...|+..|.|+.+-
T Consensus 37 ~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aS------sG-----N~g~alA~~a~~~G~~~~iv------ 99 (404)
T PRK08198 37 AEVYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAAS------AG-----NHAQGVAYAASLLGIKATIV------ 99 (404)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEEC------CC-----HHHHHHHHHHHHcCCCEEEE------
Confidence 3699999987411 11 2222211 35665542 12 22335567899999998871
Q ss_pred hcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHH
Q 036921 320 TDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIAS 399 (527)
Q Consensus 320 ~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 399 (527)
.|..+....+...-..|++.+... + . .-++++...+++++ +.. .|-..|.+ + ...+.-..
T Consensus 100 ----~p~~~~~~k~~~~~~~GA~Vi~~~-~----~-~~~~~~~a~~~~~~-~g~-~~~~~~~~-------~-~~~~g~~t 159 (404)
T PRK08198 100 ----MPETAPLSKVKATRSYGAEVVLHG-D----V-YDEALAKAQELAEE-TGA-TFVHPFDD-------P-DVIAGQGT 159 (404)
T ss_pred ----ECCCCCHHHHHHHHhCCCEEEEEC-C----C-HHHHHHHHHHHHHh-cCC-EecCCCCC-------c-cHHHHHHH
Confidence 122222223344455699887653 2 2 35777766666544 222 12111210 1 11222234
Q ss_pred HHHHHHHhc-CCcEEEEECCCcHHHHHHH----hhCCCCCEEEEee
Q 036921 400 SAVRAAIKV-KASVIICFTSSGRAARLIA----KYRPTMPVLSVVI 440 (527)
Q Consensus 400 ~av~~a~~~-~a~~Ivv~T~sG~tA~~is----~~RP~~PIiAv~~ 440 (527)
.+.++.+++ +.++||+..-+|.+..-++ .+.|...|+++-+
T Consensus 160 ~a~EI~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~ 205 (404)
T PRK08198 160 IGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQA 205 (404)
T ss_pred HHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 456666665 4688999999998865544 4689999999843
No 390
>PRK07476 eutB threonine dehydratase; Provisional
Probab=37.92 E-value=4.8e+02 Score=27.01 Aligned_cols=118 Identities=17% Similarity=0.233 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 297 KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
..+...|++.|.|+.+. .|..+.-..+...-..|++.+... + ..-++++...+++++- .. .|
T Consensus 80 ~alA~~a~~~G~~~~i~----------vp~~~~~~k~~~~~~~GA~V~~~~-~-----~~~~~~~~a~~~~~~~-g~-~~ 141 (322)
T PRK07476 80 RALAYAARALGIRATIC----------MSRLVPANKVDAIRALGAEVRIVG-R-----SQDDAQAEVERLVREE-GL-TM 141 (322)
T ss_pred HHHHHHHHHhCCCEEEE----------eCCCCCHHHHHHHHHcCCEEEEEC-C-----CHHHHHHHHHHHHHhc-CC-EE
Confidence 35667899999998861 122222334455556799976654 2 2456777766665431 11 22
Q ss_pred hhhhhhhhcccCCCCChHHHHHHHHHHHHHhc-CCcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 377 DLYFKKTVKCVGEPMTHLESIASSAVRAAIKV-KASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~-~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
-..|. .|. ..+.....+.++.+++ +.++||+.+-+|.++.-+++ +.|...|+++-+
T Consensus 142 ~~~~~-------n~~-~~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~ 202 (322)
T PRK07476 142 VPPFD-------DPR-IIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSM 202 (322)
T ss_pred eCCCC-------Ccc-eeechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 11111 111 1122234556666665 46889999999998665554 579999999854
No 391
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.83 E-value=94 Score=31.99 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=49.3
Q ss_pred cCCccccCCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEe--ecChHhHhhHHHHHH
Q 036921 194 ASQIRIELPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAK--IENIEGLTHFDEILQ 271 (527)
Q Consensus 194 lp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaK--IEt~~av~nldeI~~ 271 (527)
.|+..+.+.. .+.+.+. .+++.|+|+|.+.. -++++++++.+.+. .++++.|- | -.+|+.++++
T Consensus 187 ~~~~~I~VEv---~tleea~-eA~~~gaD~I~LD~-~~~e~l~~~v~~~~-----~~i~leAsGGI----t~~ni~~~a~ 252 (277)
T PRK05742 187 APGKPVEVEV---ESLDELR-QALAAGADIVMLDE-LSLDDMREAVRLTA-----GRAKLEASGGI----NESTLRVIAE 252 (277)
T ss_pred CCCCeEEEEe---CCHHHHH-HHHHcCCCEEEECC-CCHHHHHHHHHHhC-----CCCcEEEECCC----CHHHHHHHHH
Confidence 3555554432 3456664 46899999999975 58888888887652 24444442 3 2468888888
Q ss_pred h-CCEEEEeC
Q 036921 272 A-ADGIILSR 280 (527)
Q Consensus 272 ~-sDgImIaR 280 (527)
. +|+|-+|.
T Consensus 253 tGvD~Isvg~ 262 (277)
T PRK05742 253 TGVDYISIGA 262 (277)
T ss_pred cCCCEEEECh
Confidence 7 69999864
No 392
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=37.80 E-value=1e+02 Score=29.30 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=35.5
Q ss_pred HHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCC
Q 036921 43 VDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKK 85 (527)
Q Consensus 43 ~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~ 85 (527)
.+.+++++++|++.+.+.....+..+..+.+..+++..+.++.
T Consensus 24 ~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (212)
T PRK00043 24 LEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRRYGV 66 (212)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 4678999999999999998888888788888888877666553
No 393
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=37.79 E-value=4.4e+02 Score=27.27 Aligned_cols=117 Identities=16% Similarity=0.199 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 297 KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
.-+...|+..|.|+.+. .|..+.-..+...-..|++.+...+ . ..++.+...+++++ +.+ .|
T Consensus 80 ~alA~~a~~~G~~~~v~----------~p~~~~~~k~~~~~~~GA~V~~~~~-----~-~~~~~~~a~~~~~~-~g~-~~ 141 (317)
T TIGR02991 80 RALAYAAAEEGVRATIC----------MSELVPQNKVDEIRRLGAEVRIVGR-----S-QDDAQEEVERLVAD-RGL-TM 141 (317)
T ss_pred HHHHHHHHHhCCCEEEE----------cCCCCCHHHHHHHHHcCCEEEEeCC-----C-HHHHHHHHHHHHHh-cCC-Ee
Confidence 35667899999998861 1222222334444556999877653 2 24566666666543 111 11
Q ss_pred hhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC-CcEEEEECCCcHHHHHHHh----hCCCCCEEEEe
Q 036921 377 DLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK-ASVIICFTSSGRAARLIAK----YRPTMPVLSVV 439 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~ 439 (527)
...|. .+ ...+....-+.++.+++. .+.||+..-+|.+..-+++ ++|...|+++-
T Consensus 142 ~~~~~-------n~-~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigve 201 (317)
T TIGR02991 142 LPPFD-------HP-DIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVS 201 (317)
T ss_pred eCCCC-------Ch-HHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 11111 01 122333445666666663 5789999999998776666 46999999974
No 394
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=37.74 E-value=2.8e+02 Score=28.56 Aligned_cols=124 Identities=13% Similarity=0.051 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHH---hCCcEEEeCCccccCCChHHHHHHHHHHHHHH
Q 036921 295 FQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVL---DGSDAILLGAETLRGLYPVETISIVGKICAEA 370 (527)
Q Consensus 295 ~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~---~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~a 370 (527)
+.+++++.+++.|+|||. -- ..-+|+-+ .-.+.++. .|+|++-++. ..| ..+|.-..+.+
T Consensus 74 ~l~~~i~~l~~~g~~VilD~K------~~DI~nTv--~~ya~a~~~~~~g~DavTVhp--~~G------~d~l~~~~~~~ 137 (278)
T PRK00125 74 QLERTIAYLREAGVLVIADAK------RGDIGSTA--EAYAKAAFESPLEADAVTVSP--YMG------FDSLEPYLEYA 137 (278)
T ss_pred HHHHHHHHHHHCCCcEEEEee------cCChHHHH--HHHHHHHhcCccCCcEEEECC--cCC------HHHHHHHHHHH
Confidence 456799999999999997 43 22344222 12233444 6899999884 334 33344444433
Q ss_pred hhc---c------chh--hhhhhhhcccCCCCChHHHHHHHHHHHHH----hcCCcEEEEECCCcHHHHHHHhhCCCCCE
Q 036921 371 EKV---F------NQD--LYFKKTVKCVGEPMTHLESIASSAVRAAI----KVKASVIICFTSSGRAARLIAKYRPTMPV 435 (527)
Q Consensus 371 E~~---~------~~~--~~~~~~~~~~~~~~~~~~~ia~~av~~a~----~~~a~~Ivv~T~sG~tA~~is~~RP~~PI 435 (527)
++. . +.. ..++++. .....+..+.++.-+.+... ..+...+||.++.+.-++.+-+.-|..||
T Consensus 138 ~~~~k~vfVlvlTSnp~s~~lq~~~--~~~~~~l~~~V~~~a~~~~~~~~~~~g~~G~VVgaT~p~e~~~iR~~~~~~~i 215 (278)
T PRK00125 138 EEHGKGVFVLCRTSNPGGSDLQFLR--TADGRPLYQHVADLAAALNNLGNCGYGSIGLVVGATFPPELAAVRKILGGMPL 215 (278)
T ss_pred HhcCCEEEEEEeCCCCCHHHHHhhh--ccCCCcHHHHHHHHHHHHhccccCCCCCCEEEECCCCHHHHHHHHHhCCCCeE
Confidence 321 0 111 1111110 00111344555555544443 36777877777777778888777677777
Q ss_pred E
Q 036921 436 L 436 (527)
Q Consensus 436 i 436 (527)
+
T Consensus 216 L 216 (278)
T PRK00125 216 L 216 (278)
T ss_pred E
Confidence 7
No 395
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.57 E-value=39 Score=34.44 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=29.8
Q ss_pred cCCcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 408 VKASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 408 ~~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
..++.++|.|.+|.||..+|. ..|.++.+.+|+
T Consensus 146 ~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~ltP 182 (265)
T PRK04885 146 FRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTE 182 (265)
T ss_pred EEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEEEe
Confidence 468999999999999999998 789999999865
No 396
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=37.36 E-value=3.8e+02 Score=28.22 Aligned_cols=117 Identities=11% Similarity=0.120 Sum_probs=62.7
Q ss_pred cccEEEecC----------CCCHHHHHHHHHHHHHc----CCCCCceEEEeecChHhHhhHHHHHHh-----CCEEEEeC
Q 036921 220 KIDFLSLSY----------TRHAEDVRQAREYLSKL----GDLSQTQIFAKIENIEGLTHFDEILQA-----ADGIILSR 280 (527)
Q Consensus 220 g~d~I~~sf----------V~s~~dv~~lr~~l~~~----~~~~~~~IiaKIEt~~av~nldeI~~~-----sDgImIaR 280 (527)
.+|++-+.+ -+.++.+.++-+.+.+. .....++|++|+=---.-+++.+++++ +|||.+.=
T Consensus 166 ~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~N 245 (335)
T TIGR01036 166 LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATN 245 (335)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEEC
Confidence 489887743 23444555544433322 100238899999432222345555553 38887521
Q ss_pred ----CC-C-----cCCC----CchhHHHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcE
Q 036921 281 ----GN-L-----GIDL----PPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDA 343 (527)
Q Consensus 281 ----gD-L-----g~e~----~~~~v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~ 343 (527)
.+ + +... |..--+.+.+.+-...+.. ..|+|- ..+. ...|+..+++.|||+
T Consensus 246 T~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~ipiig~GGI~------------~~~da~e~l~aGA~~ 313 (335)
T TIGR01036 246 TTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRLPIIGVGGIS------------SAQDALEKIRAGASL 313 (335)
T ss_pred CCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------------CHHHHHHHHHcCCcH
Confidence 00 0 1011 1223344444444444444 368876 6543 356889999999999
Q ss_pred EEeCC
Q 036921 344 ILLGA 348 (527)
Q Consensus 344 imLs~ 348 (527)
|.+..
T Consensus 314 Vqv~t 318 (335)
T TIGR01036 314 LQIYS 318 (335)
T ss_pred HHhhH
Confidence 98873
No 397
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=36.91 E-value=5.4e+02 Score=27.48 Aligned_cols=138 Identities=18% Similarity=0.166 Sum_probs=71.8
Q ss_pred HHHHHhhcccccccEEEecCCCCH---------------HHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHA---------------EDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA- 272 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~---------------~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~- 272 (527)
.++++ .+.++|++.|.+.+--|. +.+.+..++..+.| ..+.+-+.-.+..-.+.+.++++.
T Consensus 78 ~~di~-~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G--~~v~~~~ed~~r~~~~~l~~~~~~~ 154 (378)
T PRK11858 78 KSDID-ASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHG--LYVSFSAEDASRTDLDFLIEFAKAA 154 (378)
T ss_pred HHHHH-HHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC--CeEEEEeccCCCCCHHHHHHHHHHH
Confidence 45665 567899999888775554 33333444555555 333332222223333444444443
Q ss_pred ----CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 273 ----ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 273 ----sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
+|.|.++ |=.--+.++++..+-+.+.+ ..+.|+.+ ++ | ..--| +.....|+..|++.+=-|
T Consensus 155 ~~~Ga~~I~l~--DT~G~~~P~~v~~lv~~l~~---~~~~~l~~H~H-------n-d~GlA-~AN~laAv~aGa~~vd~t 220 (378)
T PRK11858 155 EEAGADRVRFC--DTVGILDPFTMYELVKELVE---AVDIPIEVHCH-------N-DFGMA-TANALAGIEAGAKQVHTT 220 (378)
T ss_pred HhCCCCEEEEe--ccCCCCCHHHHHHHHHHHHH---hcCCeEEEEec-------C-CcCHH-HHHHHHHHHcCCCEEEEe
Confidence 2666664 42222233344444443332 33788888 76 1 11122 222334778998876443
Q ss_pred ----CccccCCChHHHHHHHH
Q 036921 348 ----AETLRGLYPVETISIVG 364 (527)
Q Consensus 348 ----~Eta~G~yP~e~V~~~~ 364 (527)
||- .|+=|.|.|-+.-
T Consensus 221 v~GlGer-aGNa~lE~vv~~L 240 (378)
T PRK11858 221 VNGLGER-AGNAALEEVVMAL 240 (378)
T ss_pred ecccccc-ccCccHHHHHHHH
Confidence 343 5788888765543
No 398
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=36.90 E-value=4.9e+02 Score=26.88 Aligned_cols=97 Identities=16% Similarity=0.216 Sum_probs=59.1
Q ss_pred HHHHhhcccccccEEEec------CCCCHHHHHHHHHHH-HHcCCCCCceEEEeec---ChHhHhhHHHHHHh-CCEEEE
Q 036921 210 EVISSWGVQNKIDFLSLS------YTRHAEDVRQAREYL-SKLGDLSQTQIFAKIE---NIEGLTHFDEILQA-ADGIIL 278 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~s------fV~s~~dv~~lr~~l-~~~~~~~~~~IiaKIE---t~~av~nldeI~~~-sDgImI 278 (527)
+.+.+|.++.|+|+|++. +--|.++=.++-+.. ...+ .++++|+-+= |.++++....--+. +||+|+
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~--grvpviaG~g~~~t~eai~lak~a~~~Gad~il~ 105 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVG--GRVPVIAGVGSNSTAEAIELAKHAEKLGADGILV 105 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHC--CCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEE
Confidence 333357889999998873 445566655554443 4444 6788999873 34444433333222 399999
Q ss_pred eCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 279 SRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 279 aRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
-+-.+- ..+.+.+...-+.|++++ +.|+|+
T Consensus 106 v~PyY~-k~~~~gl~~hf~~ia~a~---~lPvil 135 (299)
T COG0329 106 VPPYYN-KPSQEGLYAHFKAIAEAV---DLPVIL 135 (299)
T ss_pred eCCCCc-CCChHHHHHHHHHHHHhc---CCCEEE
Confidence 654442 233456666666666655 899987
No 399
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=36.79 E-value=1.9e+02 Score=29.07 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=54.2
Q ss_pred HHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh--CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ec
Q 036921 238 AREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA--ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TR 314 (527)
Q Consensus 238 lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~--sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq 314 (527)
+|+.|.... .-...+.++=++..+ |++.. .|.|+|. +|=+......++. ++.+|+.+|..+++ -.
T Consensus 3 lk~~l~~g~--~~~g~~~~~~~p~~~----e~~~~~g~D~v~iD-----lEH~~~~~~~~~~-~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQ--PQIGLWLGLADPYAA----EICAGAGFDWLLID-----GEHAPNDVRTILS-QLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCC--ceEEEEEeCCCcHHH----HHHHhcCCCEEEEe-----ccCCCCCHHHHHH-HHHHHHhcCCCcEEECC
Confidence 455555422 224466666665544 44444 3999995 2333334444555 78899899988887 32
Q ss_pred chhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 315 VVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 315 ~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
.+.. .++..++..|+|+||+-
T Consensus 71 ---------~~~~---~~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 71 ---------IGDP---VLIKQLLDIGAQTLLVP 91 (249)
T ss_pred ---------CCCH---HHHHHHhCCCCCEEEec
Confidence 3333 37888999999999996
No 400
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=36.71 E-value=4.7e+02 Score=26.55 Aligned_cols=127 Identities=16% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCHhhHHHHHhhcccccccEEEec--------------CCCCHHHHHHHHHHHHHcCCCCCceEEEeec-------ChHh
Q 036921 204 LSDKDKEVISSWGVQNKIDFLSLS--------------YTRHAEDVRQAREYLSKLGDLSQTQIFAKIE-------NIEG 262 (527)
Q Consensus 204 lt~~D~~di~~~~~~~g~d~I~~s--------------fV~s~~dv~~lr~~l~~~~~~~~~~IiaKIE-------t~~a 262 (527)
+|-+|..-.+ .+-+.|+|.|... .+.-.+-+..++...+.. +.+.|++=++ -.++
T Consensus 17 ~~ayD~~sA~-l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~---~~p~viaD~~fg~y~~~~~~a 92 (254)
T cd06557 17 LTAYDYPTAK-LADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGA---PRALVVADMPFGSYQTSPEQA 92 (254)
T ss_pred EeCCCHHHHH-HHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcC---CCCeEEEeCCCCcccCCHHHH
Q ss_pred HhhHHHHHHhC--CEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEE--------E-ecchhhhhcCCCCChHhh-
Q 036921 263 LTHFDEILQAA--DGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAV--------V-TRVVDSMTDNLRPTRAEA- 330 (527)
Q Consensus 263 v~nldeI~~~s--DgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi--------~-Tq~LeSM~~~p~PtraEv- 330 (527)
++|.-.+++.+ +||.|--| ..+...|+++.++|.||+ . ++.=.-.+......+++-
T Consensus 93 v~~a~r~~~~aGa~aVkiEd~------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~ 160 (254)
T cd06557 93 LRNAARLMKEAGADAVKLEGG------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERL 160 (254)
T ss_pred HHHHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHHHHH
Q ss_pred -hhHHHHHHhCCcEEEe
Q 036921 331 -TDVANAVLDGSDAILL 346 (527)
Q Consensus 331 -~Dv~nav~~g~D~imL 346 (527)
.+.......|+|+++|
T Consensus 161 i~ra~a~~~AGA~~i~l 177 (254)
T cd06557 161 LEDALALEEAGAFALVL 177 (254)
T ss_pred HHHHHHHHHCCCCEEEE
No 401
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=36.71 E-value=2.7e+02 Score=27.69 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCceEEEeecC---hHhHhhHHHHHHh--CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHH
Q 036921 230 RHAEDVRQAREYLSKLGDLSQTQIFAKIEN---IEGLTHFDEILQA--ADGIILSRGNLGIDLPPEKVFLFQKAALYKCN 304 (527)
Q Consensus 230 ~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt---~~av~nldeI~~~--sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~ 304 (527)
++++.+.++.+.+.+. +++|..||=. .+.++ +-..+.. .|+|-+.-+.-+....+ ..++..+
T Consensus 123 ~~p~~l~eiv~avr~~----~~pVsvKir~g~~~~~~~-la~~l~~aG~d~ihv~~~~~g~~ad~--------~~I~~i~ 189 (233)
T cd02911 123 KDPERLSEFIKALKET----GVPVSVKIRAGVDVDDEE-LARLIEKAGADIIHVDAMDPGNHADL--------KKIRDIS 189 (233)
T ss_pred CCHHHHHHHHHHHHhc----CCCEEEEEcCCcCcCHHH-HHHHHHHhCCCEEEECcCCCCCCCcH--------HHHHHhc
Confidence 3456666666555542 4678888821 11221 2222222 37765532222212222 2333333
Q ss_pred HcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCC
Q 036921 305 MAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGA 348 (527)
Q Consensus 305 ~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~ 348 (527)
.++|+|. ..+ - ...|+..++..|+|+||+.-
T Consensus 190 -~~ipVIgnGgI---------~---s~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 190 -TELFIIGNNSV---------T---TIESAKEMFSYGADMVSVAR 221 (233)
T ss_pred -CCCEEEEECCc---------C---CHHHHHHHHHcCCCEEEEcC
Confidence 5799887 543 2 33566777778999999983
No 402
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=36.63 E-value=1.5e+02 Score=32.23 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=57.7
Q ss_pred ccccccEEEecCCCCHHHHHHHHHHHHHcCCC------C------CceEEEe---------------ecChHhHhhHHHH
Q 036921 217 VQNKIDFLSLSYTRHAEDVRQAREYLSKLGDL------S------QTQIFAK---------------IENIEGLTHFDEI 269 (527)
Q Consensus 217 ~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~------~------~~~IiaK---------------IEt~~av~nldeI 269 (527)
...|+...++++|-.-+.-+.+++.|...+.. + ...|+|. -+...=++.+++.
T Consensus 61 asLGa~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~~~~~~ll~~~~~~ 140 (467)
T COG2870 61 ASLGANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPIEDENKLLEKIKNA 140 (467)
T ss_pred HHcCCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEEEecccccCcchhHHHHHHHHHHH
Confidence 46788888999998888888888887654310 0 0112211 1222334567888
Q ss_pred HHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 270 LQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 270 ~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
++-.|++++. +++---+.. -+.||..||++|+||.+
T Consensus 141 l~~~~~vVLS------DY~KG~L~~-~q~~I~~ar~~~~pVLv 176 (467)
T COG2870 141 LKSFDALVLS------DYAKGVLTN-VQKMIDLAREAGIPVLV 176 (467)
T ss_pred hhcCCEEEEe------ccccccchh-HHHHHHHHHHcCCcEEE
Confidence 8888999995 222211222 46789999999999997
No 403
>PLN02417 dihydrodipicolinate synthase
Probab=36.54 E-value=4.5e+02 Score=26.73 Aligned_cols=91 Identities=12% Similarity=0.034 Sum_probs=51.1
Q ss_pred CCEEEEe-CCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhH-HHHHHhCCcEEEeCCc
Q 036921 273 ADGIILS-RGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDV-ANAVLDGSDAILLGAE 349 (527)
Q Consensus 273 sDgImIa-RgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv-~nav~~g~D~imLs~E 349 (527)
.|||++. -.-=+..+..++-..+-+.+++.+ ....|++. +- .++-.|+.+. -.|-..|+|++|+..=
T Consensus 36 v~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~-~~~~pvi~gv~---------~~~t~~~i~~a~~a~~~Gadav~~~~P 105 (280)
T PLN02417 36 AEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCF-GGKIKVIGNTG---------SNSTREAIHATEQGFAVGMHAALHINP 105 (280)
T ss_pred CCEEEECccCcchhhCCHHHHHHHHHHHHHHh-CCCCcEEEECC---------CccHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 4999984 212223344444333333333332 22468887 43 3333445444 4477889999999765
Q ss_pred cccCCChHHHHHHHHHHHHHHhhcc
Q 036921 350 TLRGLYPVETISIVGKICAEAEKVF 374 (527)
Q Consensus 350 ta~G~yP~e~V~~~~~i~~~aE~~~ 374 (527)
.....-+.+.++....++... ..+
T Consensus 106 ~y~~~~~~~i~~~f~~va~~~-pi~ 129 (280)
T PLN02417 106 YYGKTSQEGLIKHFETVLDMG-PTI 129 (280)
T ss_pred ccCCCCHHHHHHHHHHHHhhC-CEE
Confidence 433223467888888888765 443
No 404
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=36.39 E-value=5.1e+02 Score=26.90 Aligned_cols=113 Identities=14% Similarity=0.148 Sum_probs=73.7
Q ss_pred cCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHH
Q 036921 227 SYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNM 305 (527)
Q Consensus 227 sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~ 305 (527)
.-.+++++|+++++.. +++||+|+=--. +...+.+.+. +|.| | ..+..-+ -...+...+.
T Consensus 51 ~R~~~p~~I~~I~~~V-------~iPVig~~kigh-~~Ea~~L~~~GvDiI-----D-eTe~lrP-----ade~~~~~K~ 111 (287)
T TIGR00343 51 ARMSDPKMIKEIMDAV-------SIPVMAKVRIGH-FVEAQILEALGVDYI-----D-ESEVLTP-----ADWTFHIDKK 111 (287)
T ss_pred eecCCHHHHHHHHHhC-------CCCEEEEeeccH-HHHHHHHHHcCCCEE-----E-ccCCCCc-----HHHHHHHHHH
Confidence 4466788888887654 578988773221 4445555544 3776 4 2222111 1333333333
Q ss_pred -cCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhc
Q 036921 306 -AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKV 373 (527)
Q Consensus 306 -~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~ 373 (527)
.+.|+.. .. .+.+.-+++..|+|.|--++|--.| +-+|+|+-|+.+-.++...
T Consensus 112 ~f~vpfmad~~--------------~l~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 112 KFKVPFVCGAR--------------DLGEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred HcCCCEEccCC--------------CHHHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHHH
Confidence 4888775 32 3456678899999999999998777 6799999999998877654
No 405
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=36.36 E-value=3.9e+02 Score=28.79 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=66.3
Q ss_pred HHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchh
Q 036921 298 AALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQD 377 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~ 377 (527)
-+...|+..|.++++. .|..+.-..+.+.-..|++.+...+ ..-++++.+.++.++- .++...
T Consensus 130 alA~~a~~~G~~~~Iv----------vp~~~~~~k~~~i~~~GA~Vi~v~~------~~~~~~~~a~~~~~~~-g~~~v~ 192 (399)
T PRK08206 130 GVAWAAQQLGQKAVIY----------MPKGSSEERVDAIRALGAECIITDG------NYDDSVRLAAQEAQEN-GWVVVQ 192 (399)
T ss_pred HHHHHHHHcCCCEEEE----------ECCCCCHHHHHHHHHcCCEEEEeCC------CHHHHHHHHHHHHHHc-CCEEec
Confidence 4667899999998871 2333434455666778999766542 3456777766655431 111110
Q ss_pred h-hhhhhhcccCCCCChHHHHHHHHHHHHHhcC-----CcEEEEECCCcHHHHHHHhh-----CC-CCCEEEE
Q 036921 378 L-YFKKTVKCVGEPMTHLESIASSAVRAAIKVK-----ASVIICFTSSGRAARLIAKY-----RP-TMPVLSV 438 (527)
Q Consensus 378 ~-~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-----a~~Ivv~T~sG~tA~~is~~-----RP-~~PIiAv 438 (527)
. .+. .....+....+-....+.++.++++ .+.|||.+-+|.++.-++++ ++ ...|+++
T Consensus 193 ~~~~~---~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~V 262 (399)
T PRK08206 193 DTAWE---GYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVV 262 (399)
T ss_pred Ccccc---CcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEE
Confidence 0 000 0000011112223334555555543 68999999999887766543 24 4558876
No 406
>PRK00865 glutamate racemase; Provisional
Probab=36.19 E-value=63 Score=32.64 Aligned_cols=118 Identities=11% Similarity=0.146 Sum_probs=62.1
Q ss_pred hcccccccEEEecCCCCHH--HHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCC--EEEEeCCCCcCCCCch
Q 036921 215 WGVQNKIDFLSLSYTRHAE--DVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAAD--GIILSRGNLGIDLPPE 290 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~--dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sD--gImIaRgDLg~e~~~~ 290 (527)
+..+.|+|+|+++ ++|+. -+.++|+. -+++|+. ||. ++...-.. .... ||+=. .-. -
T Consensus 62 ~L~~~g~d~iVIa-CNTa~~~~l~~lr~~-------~~iPvig-i~~--a~~~a~~~-~~~~~igVLaT------~~T-i 122 (261)
T PRK00865 62 FLLEYGVKMLVIA-CNTASAVALPDLRER-------YDIPVVG-IVP--AIKPAAAL-TRNGRIGVLAT------PGT-V 122 (261)
T ss_pred HHHhCCCCEEEEe-CchHHHHHHHHHHHh-------CCCCEEe-eHH--HHHHHHHh-cCCCeEEEEEC------HHH-h
Confidence 4567899999999 78876 35677653 3578999 873 44433211 1122 33321 111 1
Q ss_pred hHHHHHHHHHHHHHHcCCcEE-E-ecchhhhhcCCCCC----hHhhhhHHHH-HHhCCcEEEeCCccccCCChH
Q 036921 291 KVFLFQKAALYKCNMAGKPAV-V-TRVVDSMTDNLRPT----RAEATDVANA-VLDGSDAILLGAETLRGLYPV 357 (527)
Q Consensus 291 ~v~~~qk~Ii~~c~~~gKpvi-~-Tq~LeSM~~~p~Pt----raEv~Dv~na-v~~g~D~imLs~Eta~G~yP~ 357 (527)
+-...|+.+-+.. .+.-+. + +.-+-.++++.... +..+....+. ..+|+|+++|. ...||.
T Consensus 123 ~s~~y~~~i~~~~--~~~~v~~~~~~~lv~~ie~g~~~~~~~~~~l~~~l~~l~~~g~d~iILG----CTh~p~ 190 (261)
T PRK00865 123 KSAAYRDLIARFA--PDCQVESLACPELVPLVEAGILGGPVTLEVLREYLAPLLAAGIDTLVLG----CTHYPL 190 (261)
T ss_pred hchHHHHHHHHhC--CCCEEEEecCHHHHHHHhCCCcCCHHHHHHHHHHHHHHhcCCCCEEEEC----CcCHHH
Confidence 2223443332221 123333 3 44444555544332 2223344333 35799999998 888985
No 407
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.06 E-value=1e+02 Score=31.93 Aligned_cols=64 Identities=11% Similarity=0.068 Sum_probs=46.4
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhH--hhHHHHHHh-CCEEEEeC
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGL--THFDEILQA-ADGIILSR 280 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av--~nldeI~~~-sDgImIaR 280 (527)
.+++. -+++.|+|.|.+=... +++++++.+.++..+ .++ +||---|+ +|+.+.++. .|.|-+|.
T Consensus 209 l~ea~-eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~--~~v----~ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 209 LEQLD-EVLAEGAELVLLDNFP-VWQTQEAVQRRDARA--PTV----LLESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred HHHHH-HHHHcCCCEEEeCCCC-HHHHHHHHHHHhccC--CCE----EEEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 33444 3589999999999866 899999888776554 443 45555555 588888887 59998853
No 408
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=35.91 E-value=1.8e+02 Score=24.79 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcE
Q 036921 231 HAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPA 310 (527)
Q Consensus 231 s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpv 310 (527)
|.--+..+++++.+.| -+..+.+ -++.++++.+...|.|+++ +.+...++++-+.+...|+|+
T Consensus 16 SS~l~~k~~~~~~~~g--i~~~v~a-----~~~~~~~~~~~~~Dvill~----------pqi~~~~~~i~~~~~~~~ipv 78 (95)
T TIGR00853 16 TSLLVNKMNKAAEEYG--VPVKIAA-----GSYGAAGEKLDDADVVLLA----------PQVAYMLPDLKKETDKKGIPV 78 (95)
T ss_pred HHHHHHHHHHHHHHCC--CcEEEEE-----ecHHHHHhhcCCCCEEEEC----------chHHHHHHHHHHHhhhcCCCE
Confidence 3345677888888877 3333333 3555566666667999886 367788999999999999998
Q ss_pred EE
Q 036921 311 VV 312 (527)
Q Consensus 311 i~ 312 (527)
.+
T Consensus 79 ~~ 80 (95)
T TIGR00853 79 EV 80 (95)
T ss_pred EE
Confidence 86
No 409
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=35.87 E-value=1.2e+02 Score=29.78 Aligned_cols=73 Identities=16% Similarity=0.145 Sum_probs=52.2
Q ss_pred CCeEEEEec-----CCCCCC-HHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCc-eEEEecCCCCeEEe
Q 036921 28 AMTKIVGTL-----GPKSRS-VDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKL-CAVMLDTVGPELQV 100 (527)
Q Consensus 28 ~~tkIi~Ti-----Gp~~~~-~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~-v~i~~Dl~GpkiR~ 100 (527)
..||||++- .|+..+ .+.+++|.+.|.|+.||-..--+.++..+++...+++.+....| +++.+--.|.--|+
T Consensus 117 ~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRi 196 (228)
T TIGR01093 117 GGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRV 196 (228)
T ss_pred CCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhh
Confidence 579999998 243322 36788899999999999998888888888887777764433344 45555555655666
No 410
>PRK08185 hypothetical protein; Provisional
Probab=35.84 E-value=1.1e+02 Score=31.64 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=46.2
Q ss_pred eEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCce
Q 036921 30 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLC 87 (527)
Q Consensus 30 tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v 87 (527)
..+..=+ ..+.+.+.+++.+++|.+.+=|.-||.+.|+..+.-..+.+.++.+|.++
T Consensus 69 vPV~lHL-DHg~~~e~i~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 69 VPFVIHL-DHGATIEDVMRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred CCEEEEC-CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 3444444 44567999999999999999999999999999888888888888777544
No 411
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=35.67 E-value=5e+02 Score=26.58 Aligned_cols=127 Identities=12% Similarity=0.146 Sum_probs=74.1
Q ss_pred CCHhhHHHHHhhcccccccEEEec---------C-----CCCHHHHHHHHHHHHHcCCCCCceEEEee------cChHhH
Q 036921 204 LSDKDKEVISSWGVQNKIDFLSLS---------Y-----TRHAEDVRQAREYLSKLGDLSQTQIFAKI------ENIEGL 263 (527)
Q Consensus 204 lt~~D~~di~~~~~~~g~d~I~~s---------f-----V~s~~dv~~lr~~l~~~~~~~~~~IiaKI------Et~~av 263 (527)
+|-+|.---+ .+-+.|+|.|.+. + |.-.+-+..++...+.. .+..|++-+ .-.+++
T Consensus 20 ~tayD~~sA~-i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~---~~~~vv~DmPf~sy~~~e~a~ 95 (263)
T TIGR00222 20 ITAYDYSFAK-LFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGA---PNCLIVTDLPFMSYATPEQAL 95 (263)
T ss_pred EeccCHHHHH-HHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhC---CCceEEeCCCcCCCCCHHHHH
Confidence 4778888775 6678999998864 1 22222233333333222 456666332 245799
Q ss_pred hhHHHHHHh--CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEE-------E-ecchhhhhcCCCCChH---hh
Q 036921 264 THFDEILQA--ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAV-------V-TRVVDSMTDNLRPTRA---EA 330 (527)
Q Consensus 264 ~nldeI~~~--sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi-------~-Tq~LeSM~~~p~Ptra---Ev 330 (527)
+|...+++. +|+|=+--| ..+-..+++..+.|.||+ . -..+--..... .|.+ ++
T Consensus 96 ~na~rl~~eaGa~aVkiEgg------------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~ggy~~qg-rt~~~a~~~ 162 (263)
T TIGR00222 96 KNAARVMQETGANAVKLEGG------------EWLVETVQMLTERGVPVVGHLGLTPQSVNILGGYKVQG-KDEEAAKKL 162 (263)
T ss_pred HHHHHHHHHhCCeEEEEcCc------------HhHHHHHHHHHHCCCCEEEecCCCceeEeecCCeeecC-CCHHHHHHH
Confidence 999999984 588887533 223355688899999999 2 12121112221 2222 22
Q ss_pred -hhHHHHHHhCCcEEEeC
Q 036921 331 -TDVANAVLDGSDAILLG 347 (527)
Q Consensus 331 -~Dv~nav~~g~D~imLs 347 (527)
.|.-.....|+|+++|-
T Consensus 163 i~~A~a~e~AGA~~ivlE 180 (263)
T TIGR00222 163 LEDALALEEAGAQLLVLE 180 (263)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 34444557799998885
No 412
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=35.67 E-value=37 Score=34.80 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=30.1
Q ss_pred hcCCcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 407 KVKASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 407 ~~~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
+..++.++|.|.+|.||.-+|. ..|..+.+++|+
T Consensus 163 ~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltp 200 (281)
T COG0061 163 SFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTP 200 (281)
T ss_pred EEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEEee
Confidence 3578999999999999999998 578999999975
No 413
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=35.66 E-value=2.9e+02 Score=28.74 Aligned_cols=39 Identities=23% Similarity=0.397 Sum_probs=29.2
Q ss_pred HHHHHHhc-----CCcEEEEECCCcHHHHHHHh----hCCCCCEEEEe
Q 036921 401 AVRAAIKV-----KASVIICFTSSGRAARLIAK----YRPTMPVLSVV 439 (527)
Q Consensus 401 av~~a~~~-----~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~ 439 (527)
+.++.+++ ..+.||+..-+|.|+.-+++ ++|.++|+++-
T Consensus 170 ~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe 217 (331)
T PRK03910 170 ALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVT 217 (331)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 44454444 47899999999999765554 57999999984
No 414
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=35.66 E-value=2.5e+02 Score=27.80 Aligned_cols=141 Identities=18% Similarity=0.188 Sum_probs=87.0
Q ss_pred CCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeC
Q 036921 201 LPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSR 280 (527)
Q Consensus 201 lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaR 280 (527)
-|-|.--+..-|. -+...|+.+.+++-+ -+|+...+|+.++..| +.++.-.---.-=+.++-|..++|+.+--=
T Consensus 105 NPIl~yG~e~~iq-~ak~aGanGfiivDl-PpEEa~~~Rne~~k~g----islvpLvaPsTtdeRmell~~~adsFiYvV 178 (268)
T KOG4175|consen 105 NPILRYGVENYIQ-VAKNAGANGFIIVDL-PPEEAETLRNEARKHG----ISLVPLVAPSTTDERMELLVEAADSFIYVV 178 (268)
T ss_pred cHHHhhhHHHHHH-HHHhcCCCceEeccC-ChHHHHHHHHHHHhcC----ceEEEeeCCCChHHHHHHHHHhhcceEEEE
Confidence 3555555666664 457889998888765 4788999999998766 333333322223356777888888665422
Q ss_pred CCCcCCCCchhHHHHHHHHHHHHHHc--CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChH
Q 036921 281 GNLGIDLPPEKVFLFQKAALYKCNMA--GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPV 357 (527)
Q Consensus 281 gDLg~e~~~~~v~~~qk~Ii~~c~~~--gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~ 357 (527)
.-.|+.=.-+.+...-..++.+.|++ .+|+-+ -. .-|+.....|+.. +|+++...
T Consensus 179 SrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGFG---------vst~EHf~qVgsv----aDGVvvGS--------- 236 (268)
T KOG4175|consen 179 SRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAVGFG---------VSTPEHFKQVGSV----ADGVVVGS--------- 236 (268)
T ss_pred EeccccccHHHHHHHHHHHHHHHHHhcCCCceeEeec---------cCCHHHHHhhhhh----ccceEecH---------
Confidence 22333222345555556666777765 578776 54 4567766666664 67777641
Q ss_pred HHHHHHHHHHHHHhhc
Q 036921 358 ETISIVGKICAEAEKV 373 (527)
Q Consensus 358 e~V~~~~~i~~~aE~~ 373 (527)
.|-++|-+||.-
T Consensus 237 ----kiv~l~g~ae~g 248 (268)
T KOG4175|consen 237 ----KIVKLLGEAESG 248 (268)
T ss_pred ----HHHHHhccCCCc
Confidence 266677777754
No 415
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=35.64 E-value=3.5e+02 Score=27.75 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=48.7
Q ss_pred ceEEEee--c-ChHhHhhHHHHHHh--CCEEEEe--------CCCCcCCCCchhHHHHHHHHHHHHHHc-CCcEEE-ecc
Q 036921 251 TQIFAKI--E-NIEGLTHFDEILQA--ADGIILS--------RGNLGIDLPPEKVFLFQKAALYKCNMA-GKPAVV-TRV 315 (527)
Q Consensus 251 ~~IiaKI--E-t~~av~nldeI~~~--sDgImIa--------RgDLg~e~~~~~v~~~qk~Ii~~c~~~-gKpvi~-Tq~ 315 (527)
..+|+.| . +++-+...-+.++. +|+|=+- +...|..+. +-+..-.+|+++.++. ++|+++ -
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~--~~~~~~~~iv~~v~~~~~~Pv~vKl-- 175 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVG--QDPELVEEICRWVREAVKIPVIAKL-- 175 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhc--cCHHHHHHHHHHHHHhcCCCeEEEC--
Confidence 4566666 4 55444444333332 3655551 112333332 2245556777777654 799998 3
Q ss_pred hhhhhcCCCCChHhhhhHHH-HHHhCCcEEEeCC
Q 036921 316 VDSMTDNLRPTRAEATDVAN-AVLDGSDAILLGA 348 (527)
Q Consensus 316 LeSM~~~p~PtraEv~Dv~n-av~~g~D~imLs~ 348 (527)
.|.-.++.+++. +...|+|++.+++
T Consensus 176 --------~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 176 --------TPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred --------CCCchhHHHHHHHHHHcCCCEEEEec
Confidence 344445666666 5567999999875
No 416
>PRK15452 putative protease; Provisional
Probab=35.60 E-value=64 Score=35.45 Aligned_cols=41 Identities=12% Similarity=0.152 Sum_probs=37.6
Q ss_pred CHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHH
Q 036921 42 SVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKT 82 (527)
Q Consensus 42 ~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~ 82 (527)
-.+.|.+|+++|++.|||.+-.-++++..+++...|++...
T Consensus 270 ~i~~l~~L~~aGV~s~KIEgR~ks~~yv~~vv~~YR~ald~ 310 (443)
T PRK15452 270 AIQHVERLTKMGVHSLKIEGRTKSFYYVARTAQVYRKAIDD 310 (443)
T ss_pred HHHHHHHHHHcCCCEEEEEeeeCCHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999998764
No 417
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=35.58 E-value=5.4e+02 Score=26.89 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=34.0
Q ss_pred CCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCc---cccCCChHHHHHHHHHHHHHHhh
Q 036921 307 GKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE---TLRGLYPVETISIVGKICAEAEK 372 (527)
Q Consensus 307 gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~E---ta~G~yP~e~V~~~~~i~~~aE~ 372 (527)
..|+|. ..+- .-.|+..++..|||+++++.- .... =+..+++++..+..+...
T Consensus 255 ~ipIiasGGIr------------~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~ 311 (326)
T cd02811 255 DLPLIASGGIR------------NGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRT 311 (326)
T ss_pred CCcEEEECCCC------------CHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Confidence 689988 6642 347899999999999999841 1111 233444555555555444
No 418
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=35.49 E-value=7.2e+02 Score=28.38 Aligned_cols=186 Identities=19% Similarity=0.127 Sum_probs=106.1
Q ss_pred CCCHhhHHHHHhhcccccccEEEe----------cCCCCHHHHHHHHHHHHHcCCCCCceEEEee--cChHhHhh-----
Q 036921 203 TLSDKDKEVISSWGVQNKIDFLSL----------SYTRHAEDVRQAREYLSKLGDLSQTQIFAKI--ENIEGLTH----- 265 (527)
Q Consensus 203 ~lt~~D~~di~~~~~~~g~d~I~~----------sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKI--Et~~av~n----- 265 (527)
.++..|+..|.....+.|++.|=+ +|+. .++-+.++.+ .+.. .++.+.+-. -|.-|..+
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~-e~~~e~l~~l-~~~~--~~~~l~~L~Rg~N~~G~~~ypddv 92 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLN-EDPWERLREL-KKAL--PNTPLQMLLRGQNLLGYRHYADDV 92 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCC-CCHHHHHHHH-HHhC--CCCEEEEEEccccccccccCchhh
Confidence 467777777755556678887644 6764 3344445443 3332 345555443 33334432
Q ss_pred HHHHHHh-----CCEE--EEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHH-HH
Q 036921 266 FDEILQA-----ADGI--ILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVAN-AV 337 (527)
Q Consensus 266 ldeI~~~-----sDgI--mIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~n-av 337 (527)
+++.++. .|.+ +.+-.| + .-.+..++.++++|+-+-.+ + ++..+|.=|...+.+++. +.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd---------~-~n~~~~i~~ak~~G~~v~~~--i-~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALND---------P-RNLQAAIQAAKKHGAHAQGT--I-SYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCc---------H-HHHHHHHHHHHHcCCEEEEE--E-EeccCCCCCHHHHHHHHHHHH
Confidence 1212221 2543 333333 2 23566778999999865543 1 444456556677777776 45
Q ss_pred HhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcCCcEEEEEC
Q 036921 338 LDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVKASVIICFT 417 (527)
Q Consensus 338 ~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~a~~Ivv~T 417 (527)
..|+|.|.+. +|+=...|.++-+.++.+.++.. .....+.++ ..-+|.+...+|.+.+|+. |=.|
T Consensus 160 ~~Gad~I~i~-Dt~G~~~P~~v~~lv~~lk~~~~--~pi~~H~Hn-----------t~Gla~An~laAveaGa~~-vd~a 224 (582)
T TIGR01108 160 EMGVDSICIK-DMAGILTPKAAYELVSALKKRFG--LPVHLHSHA-----------TTGMAEMALLKAIEAGADG-IDTA 224 (582)
T ss_pred HcCCCEEEEC-CCCCCcCHHHHHHHHHHHHHhCC--CceEEEecC-----------CCCcHHHHHHHHHHhCCCE-EEec
Confidence 5699999998 89888999999988888865432 111111111 1134555556677788884 3334
Q ss_pred CCc
Q 036921 418 SSG 420 (527)
Q Consensus 418 ~sG 420 (527)
-+|
T Consensus 225 i~G 227 (582)
T TIGR01108 225 ISS 227 (582)
T ss_pred ccc
Confidence 443
No 419
>PF01026 TatD_DNase: TatD related DNase The Pfam entry finds members not in the Prosite definition.; InterPro: IPR001130 This family of proteins are related to a large superfamily of metalloenzymes []. TatD, a member of this family has been shown experimentally to be a DNase enzyme []. Allantoinase 3.5.2.5 from EC, N-isopropylammelide isopropyl amidohydrolase 3.5.1 from EC and the SCN1 protein from fission yeast belong to this family.; GO: 0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters; PDB: 3E2V_B 1XWY_A 3GUW_D 3RCM_A 1ZZM_A 2XIO_A 1J6O_A 2GZX_A 3IPW_A 2Y1H_A ....
Probab=35.49 E-value=1.7e+02 Score=29.13 Aligned_cols=97 Identities=19% Similarity=0.263 Sum_probs=59.4
Q ss_pred HHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEee---------cChHhHhhHHHH--HHhCCEEEE
Q 036921 210 EVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKI---------ENIEGLTHFDEI--LQAADGIIL 278 (527)
Q Consensus 210 ~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKI---------Et~~av~nldeI--~~~sDgImI 278 (527)
+.+. .+.+.|+..++..- .+.++.+.+.++.++.+ ..|.+-+ .+.+.++.++++ +.....+.|
T Consensus 18 ~~~~-~~~~~g~~~~i~~~-~~~~~~~~~~~~~~~~~----~~v~~~~GiHP~~~~~~~~~~~~~l~~l~~~~~~~~~aI 91 (255)
T PF01026_consen 18 EVLE-RAREAGVSAIIIVS-TDPEDWERVLELASQYP----DRVYPALGIHPWEAHEVNEEDLEELEELINLNRPKVVAI 91 (255)
T ss_dssp HHHH-HHHHTTEEEEEEEE-SSHHHHHHHHHHHHHTT----TEEEEEE---GGGGGGHSHHHHHHHHHHHHHTSTTEEEE
T ss_pred HHHH-HHHHcCCCEEEEcC-CCHHHhHHHHHHHhcCC----CeEEEEecCCcchhhhhhHHHHHHHHHHHHhccccceee
Confidence 4443 56789998886554 44567777777666533 1233322 244556677777 555677778
Q ss_pred eCCCCcCCCCc--hhHHHHH----HHHHHHHHHcCCcEEE-ec
Q 036921 279 SRGNLGIDLPP--EKVFLFQ----KAALYKCNMAGKPAVV-TR 314 (527)
Q Consensus 279 aRgDLg~e~~~--~~v~~~q----k~Ii~~c~~~gKpvi~-Tq 314 (527)
| .-|++... +.-...| ++.++.|++.++|+++ +.
T Consensus 92 G--EiGLD~~~~~~~~~~~Q~~vF~~ql~lA~~~~~pv~iH~r 132 (255)
T PF01026_consen 92 G--EIGLDYYWRNEEDKEVQEEVFERQLELAKELNLPVSIHCR 132 (255)
T ss_dssp E--EEEEETTTTSSSGHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred e--eeccCcccccCCcHHHHHHHHHHHHHHHHHhCCcEEEecC
Confidence 5 44444421 1222445 4667889999999999 75
No 420
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=35.36 E-value=1.3e+02 Score=26.58 Aligned_cols=40 Identities=25% Similarity=0.164 Sum_probs=28.2
Q ss_pred hhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ec
Q 036921 264 THFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TR 314 (527)
Q Consensus 264 ~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq 314 (527)
+++++++..+|.++-. . .|..-...++.|.++|+|+++ |-
T Consensus 59 ~~l~~~~~~~DVvIDf--------T---~p~~~~~~~~~~~~~g~~~ViGTT 99 (124)
T PF01113_consen 59 DDLEELLEEADVVIDF--------T---NPDAVYDNLEYALKHGVPLVIGTT 99 (124)
T ss_dssp S-HHHHTTH-SEEEEE--------S----HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred hhHHHhcccCCEEEEc--------C---ChHHhHHHHHHHHhCCCCEEEECC
Confidence 6789999889966632 2 677788899999999999999 53
No 421
>PRK08197 threonine synthase; Validated
Probab=35.21 E-value=2.9e+02 Score=29.54 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHhh--CCCCCEEEEee
Q 036921 395 ESIASSAVRAAIKVKASVIICFTSSGRAARLIAKY--RPTMPVLSVVI 440 (527)
Q Consensus 395 ~~ia~~av~~a~~~~a~~Ivv~T~sG~tA~~is~~--RP~~PIiAv~~ 440 (527)
+..+..++..|.+.+.+.|++.| ||+++..+|.| +-..|.+.+++
T Consensus 112 dRga~~~i~~a~~~g~~~vv~aS-sGN~g~alA~~aa~~G~~~~v~vp 158 (394)
T PRK08197 112 ARGLAVGVSRAKELGVKHLAMPT-NGNAGAAWAAYAARAGIRATIFMP 158 (394)
T ss_pred HhHHHHHHHHHHHcCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEEc
Confidence 44455556666667777666644 88887776665 34556665543
No 422
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=35.16 E-value=1.8e+02 Score=29.08 Aligned_cols=65 Identities=15% Similarity=0.247 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 235 VRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 235 v~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
++.+++.|.+.+ .++.|-+--+..+. +|++++++..|.|+-+-.+ +.....+-+.|+++++|++.
T Consensus 80 a~~a~~~l~~in--p~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~D~----------~~~r~~ln~~~~~~~ip~v~ 144 (240)
T TIGR02355 80 VESAKDALTQIN--PHIAINPINAKLDD-AELAALIAEHDIVVDCTDN----------VEVRNQLNRQCFAAKVPLVS 144 (240)
T ss_pred HHHHHHHHHHHC--CCcEEEEEeccCCH-HHHHHHhhcCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEE
Confidence 445556676666 66666654443333 5788888888988876222 34567788999999999987
No 423
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=35.09 E-value=1.6e+02 Score=29.51 Aligned_cols=32 Identities=6% Similarity=-0.006 Sum_probs=24.2
Q ss_pred hhcccccccEEEecCC---------CCHHHHHHHHHHHHHc
Q 036921 214 SWGVQNKIDFLSLSYT---------RHAEDVRQAREYLSKL 245 (527)
Q Consensus 214 ~~~~~~g~d~I~~sfV---------~s~~dv~~lr~~l~~~ 245 (527)
+.+.+.|+|+|=+++- .+.+++.++++.+.+.
T Consensus 17 ~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (279)
T cd00019 17 KRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG 57 (279)
T ss_pred HHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHc
Confidence 4678999999866431 1568999999999876
No 424
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=35.08 E-value=5.5e+02 Score=27.87 Aligned_cols=125 Identities=13% Similarity=0.141 Sum_probs=73.3
Q ss_pred cccccEEEecCCCC-HH-------HHH-HHHHHHHHcCCCCCceEEEe-----ecChHhHhhHHHHHHhCCE--EEEeCC
Q 036921 218 QNKIDFLSLSYTRH-AE-------DVR-QAREYLSKLGDLSQTQIFAK-----IENIEGLTHFDEILQAADG--IILSRG 281 (527)
Q Consensus 218 ~~g~d~I~~sfV~s-~~-------dv~-~lr~~l~~~~~~~~~~IiaK-----IEt~~av~nldeI~~~sDg--ImIaRg 281 (527)
..|+|+|++-...+ ++ +.. .+++.+... ++.++.- -...+ -+++.+++..| .++...
T Consensus 151 ~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av----~vPLIL~gsg~~~kD~e---VLeaaLe~~~G~kpLL~SA 223 (389)
T TIGR00381 151 EFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAV----DVPIVIGGSGNPEKDPL---VLEKAAEVAEGERCLLASA 223 (389)
T ss_pred HhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhC----CCCEEEeCCCCCcCCHH---HHHHHHHHhCCCCcEEEec
Confidence 68999999998776 44 333 344444432 3344322 23333 35677777755 666533
Q ss_pred CCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ec----chhhhhcCCCCChHhhhhHHHHHHhCCc--EEEeCCcc-ccC
Q 036921 282 NLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TR----VVDSMTDNLRPTRAEATDVANAVLDGSD--AILLGAET-LRG 353 (527)
Q Consensus 282 DLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq----~LeSM~~~p~PtraEv~Dv~nav~~g~D--~imLs~Et-a~G 353 (527)
.+ ++ -.+++.+.|+++|.|+++ +. ++.++.. - ....|.. =|++..-| +.|
T Consensus 224 t~------e~---Ny~~ia~lAk~yg~~Vvv~s~~Din~ak~Ln~-----------k--L~~~Gv~~eDIVlDP~t~alG 281 (389)
T TIGR00381 224 NL------DL---DYEKIANAAKKYGHVVLSWTIMDINMQKTLNR-----------Y--LLKRGLMPRDIVMDPTTCALG 281 (389)
T ss_pred Cc------hh---hHHHHHHHHHHhCCeEEEEcCCcHHHHHHHHH-----------H--HHHcCCCHHHEEEcCCCcccc
Confidence 32 21 467899999999999998 72 1111111 1 3345776 66666555 345
Q ss_pred CChHHHHHHHHHHHHHHh
Q 036921 354 LYPVETISIVGKICAEAE 371 (527)
Q Consensus 354 ~yP~e~V~~~~~i~~~aE 371 (527)
.=...++..|.+|-+.|=
T Consensus 282 ~Gieya~s~~erIRraAL 299 (389)
T TIGR00381 282 YGIEFSITNMERIRLSGL 299 (389)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 555677777777665543
No 425
>PLN02550 threonine dehydratase
Probab=34.93 E-value=5.6e+02 Score=29.41 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=87.1
Q ss_pred ceEEEeecChHhHhh------HHHHHHh-----CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhh
Q 036921 251 TQIFAKIENIEGLTH------FDEILQA-----ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSM 319 (527)
Q Consensus 251 ~~IiaKIEt~~av~n------ldeI~~~-----sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM 319 (527)
..|+.|.|+.+-... ...|.+. .-|++-+ .-| ..=.-+...|+..|.++.+-
T Consensus 124 ~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV~a------SaG-----NhAqgvA~aA~~lGika~Iv------ 186 (591)
T PLN02550 124 VKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICS------SAG-----NHAQGVALSAQRLGCDAVIA------ 186 (591)
T ss_pred CEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEEEE------CCC-----HHHHHHHHHHHHcCCCEEEE------
Confidence 479999999854421 1122222 1243332 222 22335667899999998761
Q ss_pred hcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHH
Q 036921 320 TDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIAS 399 (527)
Q Consensus 320 ~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 399 (527)
.|..+....+...-..|++.++.. ...-++.+...+++++ +.. .|-..|++ + .....-..
T Consensus 187 ----mP~~tp~~Kv~~~r~~GAeVvl~g------~~~dea~~~A~~la~e-~g~-~fi~pfdd-------p-~viaGqgT 246 (591)
T PLN02550 187 ----MPVTTPEIKWQSVERLGATVVLVG------DSYDEAQAYAKQRALE-EGR-TFIPPFDH-------P-DVIAGQGT 246 (591)
T ss_pred ----ECCCCCHHHHHHHHHcCCEEEEeC------CCHHHHHHHHHHHHHh-cCC-EEECCCCC-------h-HHHHHHHH
Confidence 132232333444455699877652 2345677777766654 222 12111110 0 11222334
Q ss_pred HHHHHHHhcC--CcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 400 SAVRAAIKVK--ASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 400 ~av~~a~~~~--a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
-+.++.++++ .++|||..-+|.++.-++. ++|...|++|-+
T Consensus 247 ig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp 293 (591)
T PLN02550 247 VGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEP 293 (591)
T ss_pred HHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 4777777775 6999999999988655554 579999999843
No 426
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.88 E-value=1.3e+02 Score=30.97 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=42.8
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhH--hhHHHHHHh-CCEEEEeC
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGL--THFDEILQA-ADGIILSR 280 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av--~nldeI~~~-sDgImIaR 280 (527)
.+... .++++|+|+|.+-.. ++++++++.+.+.... .++.+.| --|+ +|+.++++. .|+|.+|.
T Consensus 192 leea~-~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~--~~~~ieA----sGgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 192 LEEAK-NAMNAGADIVMCDNM-SVEEIKEVVAYRNANY--PHVLLEA----SGNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred HHHHH-HHHHcCCCEEEECCC-CHHHHHHHHHHhhccC--CCeEEEE----ECCCCHHHHHHHHHcCCCEEEeCh
Confidence 44554 468999999999875 8888888888764322 3444333 3333 566777766 59999864
No 427
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=34.78 E-value=2.6e+02 Score=28.90 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=41.2
Q ss_pred hcccccccEEEe------------------cCCCCHHHHHHHHHHHHHc-CCCCCceEEEeecCh-------HhHhhHHH
Q 036921 215 WGVQNKIDFLSL------------------SYTRHAEDVRQAREYLSKL-GDLSQTQIFAKIENI-------EGLTHFDE 268 (527)
Q Consensus 215 ~~~~~g~d~I~~------------------sfV~s~~dv~~lr~~l~~~-~~~~~~~IiaKIEt~-------~av~nlde 268 (527)
...+.|+.+|.+ +.+...+.+..++.....+ + .++.|+|..|.. ++++....
T Consensus 100 ~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~--~~~~IiARTDa~~~~~~~~eAi~Ra~a 177 (285)
T TIGR02320 100 KLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTT--EDFMIIARVESLILGKGMEDALKRAEA 177 (285)
T ss_pred HHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccC--CCeEEEEecccccccCCHHHHHHHHHH
Confidence 346799999998 3344445555666555442 4 679999997764 44555555
Q ss_pred HHHh-CCEEEEe
Q 036921 269 ILQA-ADGIILS 279 (527)
Q Consensus 269 I~~~-sDgImIa 279 (527)
-.++ +|+||+-
T Consensus 178 y~eAGAD~ifv~ 189 (285)
T TIGR02320 178 YAEAGADGIMIH 189 (285)
T ss_pred HHHcCCCEEEec
Confidence 5544 5999994
No 428
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=34.72 E-value=74 Score=32.31 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeEE
Q 036921 43 VDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTVGPELQ 99 (527)
Q Consensus 43 ~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~GpkiR 99 (527)
.+..++|+++|+++.=+|+.-...+++.++..-++.+.+..+ ++|.+|+.=|++.
T Consensus 28 ~~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~~--~plsIDT~~~~v~ 82 (261)
T PRK07535 28 QKLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVVD--VPLCIDSPNPAAI 82 (261)
T ss_pred HHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhCC--CCEEEeCCCHHHH
Confidence 356677899999999999987667778888888888766555 5578998866654
No 429
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=34.53 E-value=2.2e+02 Score=27.72 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEe
Q 036921 295 FQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (527)
Q Consensus 295 ~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imL 346 (527)
+.+.+++.++++|+++++ |- - +..++..++..|+|+++-
T Consensus 188 ~~~~~i~~~~~~g~~v~~Wtv----------n---~~~~~~~~~~~GVdgi~T 227 (230)
T cd08563 188 LTEEVVEELKKRGIPVRLWTV----------N---EEEDMKRLKDLGVDGIIT 227 (230)
T ss_pred cCHHHHHHHHHCCCEEEEEec----------C---CHHHHHHHHHCCCCEEeC
Confidence 568899999999999999 82 1 234456677789999874
No 430
>PRK15456 universal stress protein UspG; Provisional
Probab=34.43 E-value=82 Score=27.94 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCcEEEEECCC--------cHHHHHHHhhCCCCCEEEE
Q 036921 399 SSAVRAAIKVKASVIICFTSS--------GRAARLIAKYRPTMPVLSV 438 (527)
Q Consensus 399 ~~av~~a~~~~a~~Ivv~T~s--------G~tA~~is~~RP~~PIiAv 438 (527)
...++.|.+.++++||+-|+. |.++..+.+. -+|||+.+
T Consensus 95 ~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~-a~~pVLvV 141 (142)
T PRK15456 95 DEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRH-ANLPVLVV 141 (142)
T ss_pred HHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHc-CCCCEEEe
Confidence 334566888999999887763 5566666554 55999864
No 431
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.36 E-value=33 Score=38.02 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=40.8
Q ss_pred eEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHH
Q 036921 30 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAA 79 (527)
Q Consensus 30 tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~ 79 (527)
..+=+-+|.+.+..+.++.|+++|+++.=++.+||......++|+.||+.
T Consensus 216 l~V~aav~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~ 265 (479)
T PRK07807 216 LRVAAAVGINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRAL 265 (479)
T ss_pred cchHhhhccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHH
Confidence 33444456666778999999999999999999999988888888888863
No 432
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=34.09 E-value=1.2e+02 Score=30.42 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCeEEeecCCC--------CHHHHHHHHHHHHHHHHHcCCceEEEecCCCCeE
Q 036921 44 DVISGCLKAGMSVARFDFSWG--------NTEYHQETLENLKAAVKTTKKLCAVMLDTVGPEL 98 (527)
Q Consensus 44 ~~l~~l~~~G~~v~RiN~shg--------~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gpki 98 (527)
+..++|+++|+++.=+|..-. ..+|+.++..-++.+.+..+ +.|.+|+.=|++
T Consensus 28 ~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~--~piSIDT~~~~v 88 (258)
T cd00423 28 EHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPD--VPISVDTFNAEV 88 (258)
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCC--CeEEEeCCcHHH
Confidence 556789999999999998665 56777778888887765554 557888875554
No 433
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=33.94 E-value=4.4e+02 Score=25.37 Aligned_cols=123 Identities=13% Similarity=0.071 Sum_probs=62.5
Q ss_pred HhhHHHHHhhcccccccEEEecC----------------CCCHHHHHHHHHHHHHcCCCCCceEEEeecC----h-HhHh
Q 036921 206 DKDKEVISSWGVQNKIDFLSLSY----------------TRHAEDVRQAREYLSKLGDLSQTQIFAKIEN----I-EGLT 264 (527)
Q Consensus 206 ~~D~~di~~~~~~~g~d~I~~sf----------------V~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt----~-~av~ 264 (527)
..+.....+.+.+.|+|+|=+.+ .+.++-+.++.+.+.+.- .+.+..|+-- . +.++
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~---~~~v~vk~r~~~~~~~~~~~ 142 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV---PIPVTVKIRLGWDDEEETLE 142 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc---CCCEEEEEeeccCCchHHHH
Confidence 34444443355667999997653 245555666655555432 2567777731 1 2222
Q ss_pred hHHHHHHh-CCEEEEeCCCCc-CCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHh-C
Q 036921 265 HFDEILQA-ADGIILSRGNLG-IDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLD-G 340 (527)
Q Consensus 265 nldeI~~~-sDgImIaRgDLg-~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~-g 340 (527)
-+..+.+. .|.|.+..+.-. ...+...+.. +-..++..+.|++. ..+ -+ ..|+..++.. |
T Consensus 143 ~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~----~~~i~~~~~ipvi~~Ggi---------~~---~~d~~~~l~~~g 206 (231)
T cd02801 143 LAKALEDAGASALTVHGRTREQRYSGPADWDY----IAEIKEAVSIPVIANGDI---------FS---LEDALRCLEQTG 206 (231)
T ss_pred HHHHHHHhCCCEEEECCCCHHHcCCCCCCHHH----HHHHHhCCCCeEEEeCCC---------CC---HHHHHHHHHhcC
Confidence 23333322 377766433110 0111112211 22222345789887 543 23 3455666666 8
Q ss_pred CcEEEeC
Q 036921 341 SDAILLG 347 (527)
Q Consensus 341 ~D~imLs 347 (527)
+|++|+.
T Consensus 207 ad~V~ig 213 (231)
T cd02801 207 VDGVMIG 213 (231)
T ss_pred CCEEEEc
Confidence 9999997
No 434
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=33.93 E-value=4.6e+02 Score=27.95 Aligned_cols=121 Identities=12% Similarity=0.141 Sum_probs=66.4
Q ss_pred HHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchh
Q 036921 298 AALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQD 377 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~ 377 (527)
-+...|+..|.++.+. .|..+....+...-..|++.+.... ..|. -.+++...+++++ +....+-
T Consensus 125 alA~~a~~~G~~~~iv----------vp~~~~~~k~~~lr~~GA~Vi~~~~--~~~~--~~~~~~a~~l~~~-~~~~~~~ 189 (368)
T PLN02556 125 SLAFMAAMKGYKMILT----------MPSYTSLERRVTMRAFGAELVLTDP--TKGM--GGTVKKAYELLES-TPDAFML 189 (368)
T ss_pred HHHHHHHHcCCCEEEE----------ECCCCCHHHHHHHHHcCCEEEEECC--CCCc--cHHHHHHHHHHHh-cCCCCcc
Confidence 4556889999998872 2444444445555566999887643 2221 1244444443332 1111111
Q ss_pred hhhhhhhcccCCCCChHHHHHHHHHHHHHhc--CCcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 378 LYFKKTVKCVGEPMTHLESIASSAVRAAIKV--KASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~--~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
..|. .+....--....+.++..+. ..++||+..-+|.|+.-+++ +.|.+.|++|-+
T Consensus 190 ~q~~-------np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep 251 (368)
T PLN02556 190 QQFS-------NPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEP 251 (368)
T ss_pred CCCC-------CHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEee
Confidence 1111 01111101223445555554 47999999999999765555 479999999854
No 435
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=33.91 E-value=80 Score=32.34 Aligned_cols=87 Identities=13% Similarity=0.202 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHH-hCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 234 DVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQ-AADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 234 dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~-~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
-++.+++.+.+.+ .+..|.+- +..---+|+++++. -.|.|+.+-+++ .....+.+.|+++++|+|.
T Consensus 85 Kve~~~~rl~~IN--P~~~V~~i-~~~i~~e~~~~ll~~~~D~VIdaiD~~----------~~k~~L~~~c~~~~ip~I~ 151 (268)
T PRK15116 85 KAEVMAERIRQIN--PECRVTVV-DDFITPDNVAEYMSAGFSYVIDAIDSV----------RPKAALIAYCRRNKIPLVT 151 (268)
T ss_pred HHHHHHHHHHhHC--CCcEEEEE-ecccChhhHHHHhcCCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEE
Confidence 3455556666666 55555442 32222357777774 368777763332 3455789999999999996
Q ss_pred -ecchhhhhcCCCCChHhhhhHHHHH
Q 036921 313 -TRVVDSMTDNLRPTRAEATDVANAV 337 (527)
Q Consensus 313 -Tq~LeSM~~~p~PtraEv~Dv~nav 337 (527)
.. .-..-.||+-+++|++...
T Consensus 152 ~gG----ag~k~dp~~~~~~di~~t~ 173 (268)
T PRK15116 152 TGG----AGGQIDPTQIQVVDLAKTI 173 (268)
T ss_pred ECC----cccCCCCCeEEEEeeeccc
Confidence 33 2345689999999998853
No 436
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=33.87 E-value=5.9e+02 Score=27.49 Aligned_cols=119 Identities=13% Similarity=0.152 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcE--EEeCCccccCCChHHHHHHHHHHHHHHhhcc
Q 036921 297 KAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDA--ILLGAETLRGLYPVETISIVGKICAEAEKVF 374 (527)
Q Consensus 297 k~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~--imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~ 374 (527)
.-+...|+..|.|+.+. .|..+....+...-..|++. +.+.++ ..-++++...+++++- . .
T Consensus 77 ~a~A~~a~~~G~~~~iv----------~p~~~~~~k~~~~~~~GA~vv~v~~~g~-----~~~~a~~~a~~~~~~~-g-~ 139 (409)
T TIGR02079 77 QGFAYACRHLGVHGTVF----------MPATTPKQKIDRVKIFGGEFIEIILVGD-----TFDQCAAAAREHVEDH-G-G 139 (409)
T ss_pred HHHHHHHHHcCCCEEEE----------ECCCCCHHHHHHHHHcCCCeeEEEEeCC-----CHHHHHHHHHHHHHhc-C-C
Confidence 45667899999998871 13333333344555669984 444432 2356666666655431 1 1
Q ss_pred chhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC--CcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 375 NQDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK--ASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~--a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
.|-..|.+ | ...+.-..-+.++..+++ .+.||+..-+|.+..-+++ ++|...|+++-+
T Consensus 140 ~~~~~~~~-------~-~~~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep 203 (409)
T TIGR02079 140 TFIPPFDD-------P-RIIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEP 203 (409)
T ss_pred EEeCCCCC-------H-hHhhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 12111110 1 112223344677777764 7999999999988655554 579999999843
No 437
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=33.76 E-value=2.8e+02 Score=25.41 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHH---------HHHHHHHHHH
Q 036921 37 GPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQ---------ETLENLKAAV 80 (527)
Q Consensus 37 Gp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~---------~~i~~ir~~~ 80 (527)
-+...+.+.+++|.++|.+.+.+++-|++.+.+. ++++.++.+.
T Consensus 94 n~~~~~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 146 (216)
T smart00729 94 RPGTLTEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLR 146 (216)
T ss_pred CcccCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3556789999999999999999999998887664 3455555553
No 438
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=33.72 E-value=2.3e+02 Score=28.47 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=29.6
Q ss_pred HHHHhcCCcEEEEECCCcHHHHHHHhhCCCCCEEEEe
Q 036921 403 RAAIKVKASVIICFTSSGRAARLIAKYRPTMPVLSVV 439 (527)
Q Consensus 403 ~~a~~~~a~~Ivv~T~sG~tA~~is~~RP~~PIiAv~ 439 (527)
.+..+.+|++|++...+...++.+++. +..|+++..
T Consensus 163 ~ay~~AGAd~i~~e~~~~e~~~~i~~~-~~~P~~~~g 198 (240)
T cd06556 163 LAYAPAGADLIVMECVPVELAKQITEA-LAIPLAGIG 198 (240)
T ss_pred HHHHHcCCCEEEEcCCCHHHHHHHHHh-CCCCEEEEe
Confidence 344567999999998888889999885 789999874
No 439
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=33.67 E-value=32 Score=24.94 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=18.3
Q ss_pred CCeEEeecC-CCCHHHHHHHHHHHH
Q 036921 54 MSVARFDFS-WGNTEYHQETLENLK 77 (527)
Q Consensus 54 ~~v~RiN~s-hg~~e~~~~~i~~ir 77 (527)
+.|.+++|| |++.++..++++.++
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~ 31 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLN 31 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHC
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcC
Confidence 568888886 899998888887773
No 440
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=33.60 E-value=5.7e+02 Score=26.58 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=27.9
Q ss_pred hHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHH
Q 036921 332 DVANAVLDGSDAILLGAETLRGLYPVETISIVGKICA 368 (527)
Q Consensus 332 Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~ 368 (527)
|+......|+|+++..+.-.....|.+..+.+.+...
T Consensus 213 dAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~ 249 (287)
T TIGR00343 213 DAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATT 249 (287)
T ss_pred HHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 4456666799999999777667789988887666543
No 441
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=33.31 E-value=3e+02 Score=27.12 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=38.9
Q ss_pred HHHHHHHHHcC-CCeEEeecCCCCHHHHHHHHHHHHHHHHHcCC
Q 036921 43 VDVISGCLKAG-MSVARFDFSWGNTEYHQETLENLKAAVKTTKK 85 (527)
Q Consensus 43 ~~~l~~l~~~G-~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~ 85 (527)
.+.+++.++.| ++.+-+-.-+.+.++..+....+++.++.+|.
T Consensus 29 ~~~l~~al~~G~v~~vQlR~K~l~~~~~~~~a~~l~~l~~~~gv 72 (221)
T PRK06512 29 AKLLRAALQGGDVASVILPQYGLDEATFQKQAEKLVPVIQEAGA 72 (221)
T ss_pred HHHHHHHHcCCCccEEEEeCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 47899999999 79999999999999999999999999988874
No 442
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=33.24 E-value=5.2e+02 Score=26.37 Aligned_cols=85 Identities=24% Similarity=0.306 Sum_probs=48.2
Q ss_pred CceEEEee--cChHhHhhHHHHHH-h--CCEEEE-------eCCCCcCCCCchhHHHHHHHHHHHHHHc-CCcEEE-ecc
Q 036921 250 QTQIFAKI--ENIEGLTHFDEILQ-A--ADGIIL-------SRGNLGIDLPPEKVFLFQKAALYKCNMA-GKPAVV-TRV 315 (527)
Q Consensus 250 ~~~IiaKI--Et~~av~nldeI~~-~--sDgImI-------aRgDLg~e~~~~~v~~~qk~Ii~~c~~~-gKpvi~-Tq~ 315 (527)
+..+++.| .+.+.....-+.++ . .|+|=+ ..| |..+. .=+..-.+++++.+++ .+|+++ -.
T Consensus 91 ~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g--g~~~~--~~~~~~~eiv~~vr~~~~~pv~vKl~- 165 (301)
T PRK07259 91 DTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG--GMAFG--TDPELAYEVVKAVKEVVKVPVIVKLT- 165 (301)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC--ccccc--cCHHHHHHHHHHHHHhcCCCEEEEcC-
Confidence 35566776 34444443333333 3 477755 222 22221 1234556777777776 899997 42
Q ss_pred hhhhhcCCCCChHhhhhHHH-HHHhCCcEEEeCC
Q 036921 316 VDSMTDNLRPTRAEATDVAN-AVLDGSDAILLGA 348 (527)
Q Consensus 316 LeSM~~~p~PtraEv~Dv~n-av~~g~D~imLs~ 348 (527)
|+-.+..+++. +...|+|++.+++
T Consensus 166 ---------~~~~~~~~~a~~l~~~G~d~i~~~n 190 (301)
T PRK07259 166 ---------PNVTDIVEIAKAAEEAGADGLSLIN 190 (301)
T ss_pred ---------CCchhHHHHHHHHHHcCCCEEEEEc
Confidence 44456666665 4567999998864
No 443
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=33.21 E-value=77 Score=31.29 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=53.1
Q ss_pred CCCCChHh-----hhhHHHHHHhCCcEEEeCCcc---ccCCChHHHHHHHHHHHHHHhhccchhhhhhhhh-cccCCCCC
Q 036921 322 NLRPTRAE-----ATDVANAVLDGSDAILLGAET---LRGLYPVETISIVGKICAEAEKVFNQDLYFKKTV-KCVGEPMT 392 (527)
Q Consensus 322 ~p~PtraE-----v~Dv~nav~~g~D~imLs~Et---a~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~-~~~~~~~~ 392 (527)
...++... +.++-.|+..|+|+|-+.--. ..|+ -.+..+.+..++++++.+.- +....-+. ...... .
T Consensus 66 g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl-~vIlE~~l~~~~~~~-~ 142 (236)
T PF01791_consen 66 GTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGL-KVILEPYLRGEEVAD-E 142 (236)
T ss_dssp SSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEE-EEEEEECECHHHBSS-T
T ss_pred CCCccccccccchHHHHHHHHHcCCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCc-EEEEEEecCchhhcc-c
Confidence 34566677 899999999999998775443 3333 36777888888888875410 00000000 000000 0
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEECCCc
Q 036921 393 HLESIASSAVRAAIKVKASVIICFTSSG 420 (527)
Q Consensus 393 ~~~~ia~~av~~a~~~~a~~Ivv~T~sG 420 (527)
........++++|.+++|+.| =|.+|
T Consensus 143 ~~~~~I~~a~ria~e~GaD~v--Kt~tg 168 (236)
T PF01791_consen 143 KKPDLIARAARIAAELGADFV--KTSTG 168 (236)
T ss_dssp THHHHHHHHHHHHHHTT-SEE--EEE-S
T ss_pred ccHHHHHHHHHHHHHhCCCEE--EecCC
Confidence 122356677888889999954 45555
No 444
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=33.03 E-value=1.8e+02 Score=28.27 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=52.6
Q ss_pred CCCeEEEEecC-----CCCCC-HHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCc-eEEEecCCCCeEE
Q 036921 27 PAMTKIVGTLG-----PKSRS-VDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKL-CAVMLDTVGPELQ 99 (527)
Q Consensus 27 ~~~tkIi~TiG-----p~~~~-~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~-v~i~~Dl~GpkiR 99 (527)
...+|||++-= |+..+ .+.+++|.+.|.++++|-..-.+.++..++++..++..+..+.| +++.+--.|.--|
T Consensus 111 ~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SR 190 (224)
T PF01487_consen 111 KGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMGELGRISR 190 (224)
T ss_dssp HTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHH
T ss_pred hCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHH
Confidence 35799999873 22221 36788899999999999999999999999888888877654555 4555655565556
Q ss_pred e
Q 036921 100 V 100 (527)
Q Consensus 100 ~ 100 (527)
+
T Consensus 191 i 191 (224)
T PF01487_consen 191 I 191 (224)
T ss_dssp H
T ss_pred H
Confidence 5
No 445
>PRK08417 dihydroorotase; Provisional
Probab=33.03 E-value=6.2e+02 Score=26.87 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=56.3
Q ss_pred CCCCHhhHHHHHhhcccccccEEEe-----cCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCE
Q 036921 202 PTLSDKDKEVISSWGVQNKIDFLSL-----SYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADG 275 (527)
Q Consensus 202 p~lt~~D~~di~~~~~~~g~d~I~~-----sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDg 275 (527)
|..+.+|.+.....++..|+-.|+. |.+.+++.+....+..+... ...+....-....+.+..+++..+. .++
T Consensus 42 ~~~~~e~~~t~s~aA~aGGvTtv~dmpnt~P~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~ 120 (386)
T PRK08417 42 DSLSSKNLKSLENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELP-MQIFPSIRALDEDGKLSNIATLLKKGAKA 120 (386)
T ss_pred CCcChhhHHHHHHHHHcCCcEEEEeCCCCCCCCCCHHHHHHHHHHhhccC-CcEEEEEEEECCCccHHHHHHHHHCCCEE
Confidence 4455556655555678888887765 34556666666655444210 0112222222334445556665432 244
Q ss_pred EEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ec
Q 036921 276 IILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TR 314 (527)
Q Consensus 276 ImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq 314 (527)
+.+. + .+. .....++++.+++.|+|+.+ .+
T Consensus 121 ~k~~-~----~~~----~~~l~~~~~~a~~~g~~V~~HaE 151 (386)
T PRK08417 121 LELS-S----DLD----ANLLKVIAQYAKMLDVPIFCRCE 151 (386)
T ss_pred EECC-C----CCC----HHHHHHHHHHHHHcCCEEEEeCC
Confidence 4431 1 111 33556777889999999998 54
No 446
>PRK15108 biotin synthase; Provisional
Probab=33.01 E-value=1.1e+02 Score=32.38 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=23.9
Q ss_pred eEEEEecCCCCCCHHHHHHHHHcCCCeEEeec
Q 036921 30 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDF 61 (527)
Q Consensus 30 tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~ 61 (527)
..+++|+|+-+ .+.+++|.++|++.+-+|+
T Consensus 125 i~v~~s~G~ls--~e~l~~LkeAGld~~n~~l 154 (345)
T PRK15108 125 LETCMTLGTLS--ESQAQRLANAGLDYYNHNL 154 (345)
T ss_pred CEEEEeCCcCC--HHHHHHHHHcCCCEEeecc
Confidence 46788999754 9999999999999665543
No 447
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=32.92 E-value=1.4e+02 Score=28.20 Aligned_cols=44 Identities=14% Similarity=0.078 Sum_probs=36.4
Q ss_pred CHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCC
Q 036921 42 SVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKK 85 (527)
Q Consensus 42 ~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~ 85 (527)
-.+.+.+++++|++.+-|..-..+.++..+.++.+.+..++++.
T Consensus 14 ~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~~l~~~~~~~~~ 57 (180)
T PF02581_consen 14 FLEQLEAALAAGVDLVQLREKDLSDEELLELARRLAELCQKYGV 57 (180)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHHHHHHHhhcceE
Confidence 35788999999999999999999999999999999999887664
No 448
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=32.82 E-value=1e+02 Score=26.42 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEECCC---------cHHHHHHHhhCCCCCEEEE
Q 036921 396 SIASSAVRAAIKVKASVIICFTSS---------GRAARLIAKYRPTMPVLSV 438 (527)
Q Consensus 396 ~ia~~av~~a~~~~a~~Ivv~T~s---------G~tA~~is~~RP~~PIiAv 438 (527)
.++...++.+.+.+++.|++-++. |.++..+.++-|+|||+.+
T Consensus 72 ~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 72 DVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 356677777899999999888752 6778888888899999853
No 449
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=32.79 E-value=4.3e+02 Score=25.51 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=54.0
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEee---c----ChHhHhhHHHHHHhCCEEEEeCC
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKI---E----NIEGLTHFDEILQAADGIILSRG 281 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKI---E----t~~av~nldeI~~~sDgImIaRg 281 (527)
.+.+.+-..+.|++.++++- .++++...+.++.+..+ ++....=| + ..+-++.+++.+.......| |
T Consensus 17 ~~~~~~~~~~~Gv~~~v~~~-~~~~~~~~~~~~~~~~~---~i~~~~GihP~~~~~~~~~~~~~l~~~l~~~~~~~i--G 90 (252)
T TIGR00010 17 VEEVIERAKAAGVTAVVAVG-TDLEDFLRALELAEKYP---NVYAAVGVHPLDVDDDTKEDIKELERLAAHPKVVAI--G 90 (252)
T ss_pred HHHHHHHHHHcCCCEEEEec-CCHHHHHHHHHHHHHCC---CEEEEEEeCcchhhcCCHHHHHHHHHHccCCCEEEE--E
Confidence 34443344678999888553 33577777777665432 22222222 1 12333444444433334444 5
Q ss_pred CCcCCCCc--hh---HHHHHHHHHHHHHHcCCcEEE-ec
Q 036921 282 NLGIDLPP--EK---VFLFQKAALYKCNMAGKPAVV-TR 314 (527)
Q Consensus 282 DLg~e~~~--~~---v~~~qk~Ii~~c~~~gKpvi~-Tq 314 (527)
..|++... .. =..+-+.+++.|++.|+||.+ |.
T Consensus 91 EiGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~ 129 (252)
T TIGR00010 91 ETGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHAR 129 (252)
T ss_pred ecccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 66665532 11 113445667788999999999 75
No 450
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=32.75 E-value=2e+02 Score=28.24 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=44.6
Q ss_pred HHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 235 VRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 235 v~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
++.+++.+.+.+ .++.|-+--+.. .-+|++++++-.|.|+.+-.+. .....+-+.|+++++|.|.
T Consensus 77 a~~~~~~l~~~n--p~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~~----------~~r~~l~~~~~~~~ip~i~ 141 (228)
T cd00757 77 AEAAAERLRAIN--PDVEIEAYNERL-DAENAEELIAGYDLVLDCTDNF----------ATRYLINDACVKLGKPLVS 141 (228)
T ss_pred HHHHHHHHHHhC--CCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEE
Confidence 445566676666 555555443333 2367888888889988873332 3566788999999999987
No 451
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=32.74 E-value=1.5e+02 Score=27.98 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=40.1
Q ss_pred HhHhhHHHHHH--hCC--EEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 261 EGLTHFDEILQ--AAD--GIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 261 ~av~nldeI~~--~sD--gImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
.+++.+++.+. ..| -||+|=.|+....+.+++..-.+.|++.++++|..+++
T Consensus 58 ~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~il 113 (191)
T PRK10528 58 QGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLL 113 (191)
T ss_pred HHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 45556666553 347 56678899987788899999999999999998877776
No 452
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=32.62 E-value=1.1e+02 Score=27.02 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCcEEEEECCCcH------HHHHHHhhCCCCCEEEE
Q 036921 398 ASSAVRAAIKVKASVIICFTSSGR------AARLIAKYRPTMPVLSV 438 (527)
Q Consensus 398 a~~av~~a~~~~a~~Ivv~T~sG~------tA~~is~~RP~~PIiAv 438 (527)
+...++.|.+.++++||+-|+.+. +|..+. .+-+|||+.+
T Consensus 92 ~~~I~~~a~~~~~DLIV~Gs~~~~~~~lgSva~~v~-~~a~~pVLvv 137 (144)
T PRK15118 92 GQVLVDAIKKYDMDLVVCGHHQDFWSKLMSSARQLI-NTVHVDMLIV 137 (144)
T ss_pred HHHHHHHHHHhCCCEEEEeCcccHHHHHHHHHHHHH-hhCCCCEEEe
Confidence 334456788899999999888432 222232 3567999965
No 453
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=32.42 E-value=91 Score=32.10 Aligned_cols=60 Identities=18% Similarity=0.320 Sum_probs=38.4
Q ss_pred hcccccccEEEecC---------CCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh----CCEEEEeCC
Q 036921 215 WGVQNKIDFLSLSY---------TRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA----ADGIILSRG 281 (527)
Q Consensus 215 ~~~~~g~d~I~~sf---------V~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~----sDgImIaRg 281 (527)
.+.+.|+|+|.++- .-+.+-+.++++.+ + .++.||+- -|+.+-.+++++ +|++|+||.
T Consensus 188 ~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~---~--~~ipvia~----GGI~~~~d~~kal~lGAd~V~ig~~ 258 (299)
T cd02809 188 RAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAV---G--GRIEVLLD----GGIRRGTDVLKALALGADAVLIGRP 258 (299)
T ss_pred HHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHh---c--CCCeEEEe----CCCCCHHHHHHHHHcCCCEEEEcHH
Confidence 45799999999864 12333344443333 2 35677763 566666666665 699999996
Q ss_pred CC
Q 036921 282 NL 283 (527)
Q Consensus 282 DL 283 (527)
-|
T Consensus 259 ~l 260 (299)
T cd02809 259 FL 260 (299)
T ss_pred HH
Confidence 55
No 454
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=32.37 E-value=1.5e+02 Score=30.23 Aligned_cols=63 Identities=21% Similarity=0.175 Sum_probs=42.3
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhH--hhHHHHHHh-CCEEEEe
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGL--THFDEILQA-ADGIILS 279 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av--~nldeI~~~-sDgImIa 279 (527)
.+.+. .+.+.|+|+|.+..+ ++++++++.+.+.... .+++++| .-|+ +|+.++++. +|+|.++
T Consensus 193 ~eea~-~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~--~~i~i~A----sGGI~~~ni~~~~~~Gvd~I~vs 258 (272)
T cd01573 193 LEEAL-AAAEAGADILQLDKF-SPEELAELVPKLRSLA--PPVLLAA----AGGINIENAAAYAAAGADILVTS 258 (272)
T ss_pred HHHHH-HHHHcCCCEEEECCC-CHHHHHHHHHHHhccC--CCceEEE----ECCCCHHHHHHHHHcCCcEEEEC
Confidence 34443 357899999999766 4567777777665432 3455444 2344 788888887 6999775
No 455
>PRK07591 threonine synthase; Validated
Probab=32.37 E-value=6.8e+02 Score=27.13 Aligned_cols=119 Identities=16% Similarity=0.151 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccc
Q 036921 296 QKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFN 375 (527)
Q Consensus 296 qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~ 375 (527)
=.-+...|+++|.|+.+- .|..+.-..+...-..|++.+..- |.| -++++.+.+++++-+.++
T Consensus 149 g~alA~~aa~~Gl~~~I~----------vP~~~~~~k~~~~~~~GA~Vi~v~-----g~~-d~a~~~a~~~~~~~~~~~- 211 (421)
T PRK07591 149 ANSVAAHAARAGLDSCVF----------IPADLEAGKIVGTLVYGPTLVAVD-----GNY-DDVNRLCSELANEHEGWG- 211 (421)
T ss_pred HHHHHHHHHHcCCCEEEE----------EcCCCCHHHHHHHHHcCCEEEEEC-----CCH-HHHHHHHHHHHHhcCCEE-
Confidence 345667889999998871 233344455666677899988765 344 467777776654321211
Q ss_pred hhhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC---CcEEEEECCCcHHHHHHHhh-----------CCCCCEEEEe
Q 036921 376 QDLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK---ASVIICFTSSGRAARLIAKY-----------RPTMPVLSVV 439 (527)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~---a~~Ivv~T~sG~tA~~is~~-----------RP~~PIiAv~ 439 (527)
+ .+. ...|. ..+--..-+.++.++++ .+.||+.+-+|.+..-+++. +|...|+++-
T Consensus 212 ~----~n~---~~~p~-~ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq 281 (421)
T PRK07591 212 F----VNI---NLRPY-YAEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQ 281 (421)
T ss_pred E----ecC---CCCcc-cccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEe
Confidence 1 000 00010 11222233566777774 58999999999997666553 6888899873
No 456
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=32.35 E-value=71 Score=31.80 Aligned_cols=73 Identities=10% Similarity=0.155 Sum_probs=47.4
Q ss_pred hcccccccEEEecCCCC-----HHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-------CCEEEEeCCC
Q 036921 215 WGVQNKIDFLSLSYTRH-----AEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-------ADGIILSRGN 282 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s-----~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-------sDgImIaRgD 282 (527)
...+.|++.+++--+.. .-|...++++... ..+++++ --++.+++++.+. +||+|+||+=
T Consensus 154 ~l~~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~----~~ipvia----sGGi~s~~D~~~l~~~~~~GvdgV~igra~ 225 (241)
T PRK14024 154 RLDSAGCSRYVVTDVTKDGTLTGPNLELLREVCAR----TDAPVVA----SGGVSSLDDLRALAELVPLGVEGAIVGKAL 225 (241)
T ss_pred HHHhcCCCEEEEEeecCCCCccCCCHHHHHHHHhh----CCCCEEE----eCCCCCHHHHHHHhhhccCCccEEEEeHHH
Confidence 34688999887765532 2245555554433 2456666 2456666666543 5999999999
Q ss_pred CcCCCCchhHHHH
Q 036921 283 LGIDLPPEKVFLF 295 (527)
Q Consensus 283 Lg~e~~~~~v~~~ 295 (527)
+.-.+++++....
T Consensus 226 ~~g~~~~~~~~~~ 238 (241)
T PRK14024 226 YAGAFTLPEALAV 238 (241)
T ss_pred HcCCCCHHHHHHH
Confidence 8888888775443
No 457
>PLN03034 phosphoglycerate kinase; Provisional
Probab=32.32 E-value=1.5e+02 Score=33.07 Aligned_cols=152 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred EeecChHhHhhHHHHHHhCCEEEEeCC-------CCcCCCCc----hhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcC
Q 036921 255 AKIENIEGLTHFDEILQAADGIILSRG-------NLGIDLPP----EKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDN 322 (527)
Q Consensus 255 aKIEt~~av~nldeI~~~sDgImIaRg-------DLg~e~~~----~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~ 322 (527)
||+.+.-++ ++.++..+|.+++|-| -+|.++|- ++....-++|++.+++.|+.+++ ..+.-.=...
T Consensus 276 aKVsdKI~v--i~~Ll~kvD~lliGG~ma~tFl~A~G~~IG~slvE~d~i~~A~~il~~a~~~gv~I~lPvD~v~a~~~~ 353 (481)
T PLN03034 276 SKVSSKIGV--IESLLEKCDILLLGGGMIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKAKGVSLLLPTDVVIADKFA 353 (481)
T ss_pred ccHHhHHHH--HHHHHHhcCEEEECcHHHHHHHHHcCCCcchhhcChhhhHHHHHHHHHHHhcCCEEECCceEEEecccC
Q ss_pred CCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHHHHHH
Q 036921 323 LRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIASSAV 402 (527)
Q Consensus 323 p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~~av 402 (527)
+...+.++ ++... -.|...|. +|. ++++...+++.++...+|. -|...-..+..+.+..
T Consensus 354 ~~~~~~~~-~~~~I---p~~~~~lD----IGp---~Ti~~~~~~i~~akTI~WN----------GPmGvFE~~~Fa~GT~ 412 (481)
T PLN03034 354 PDANSKIV-PASAI---PDGWMGLD----IGP---DSVKTFNEALDTTQTVIWN----------GPMGVFEFEKFAVGTE 412 (481)
T ss_pred CCCCeEEe-ehhcC---CCCCEEEe----cCH---HHHHHHHHHHhhCCEEEEE----------CCcccccCCcchHHHH
Q ss_pred HHHHhcCC---cEEEEECCCcHHHHHHHhh
Q 036921 403 RAAIKVKA---SVIICFTSSGRAARLIAKY 429 (527)
Q Consensus 403 ~~a~~~~a---~~Ivv~T~sG~tA~~is~~ 429 (527)
.+++.+.. +..+..--.|.|+..+.++
T Consensus 413 ~l~~aia~~~~~~a~sIvGGGDt~aAi~~~ 442 (481)
T PLN03034 413 AVAKKLAELSGKGVTTIIGGGDSVAAVEKV 442 (481)
T ss_pred HHHHHHHHhhcCCCeEEEcCcHHHHHHHHc
No 458
>PRK08328 hypothetical protein; Provisional
Probab=32.28 E-value=1.7e+02 Score=28.90 Aligned_cols=71 Identities=20% Similarity=0.163 Sum_probs=45.3
Q ss_pred HHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE--ecc
Q 036921 238 AREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV--TRV 315 (527)
Q Consensus 238 lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~--Tq~ 315 (527)
+++.+.+.+ .++.|-+--+.. .-+|++++++-.|.|+-+-.+ +..+..+-+.|+++|+|++. ++-
T Consensus 87 a~~~l~~~n--p~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~d~----------~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 87 AKWKLERFN--SDIKIETFVGRL-SEENIDEVLKGVDVIVDCLDN----------FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred HHHHHHHhC--CCCEEEEEeccC-CHHHHHHHHhcCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 344555555 667766644432 346788888888988876322 23455666789999999987 544
Q ss_pred hhhhhc
Q 036921 316 VDSMTD 321 (527)
Q Consensus 316 LeSM~~ 321 (527)
+..++.
T Consensus 154 ~~G~v~ 159 (231)
T PRK08328 154 TYGQVT 159 (231)
T ss_pred CEEEEE
Confidence 444443
No 459
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=32.18 E-value=2.1e+02 Score=26.95 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHc-CCcEEE
Q 036921 235 VRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMA-GKPAVV 312 (527)
Q Consensus 235 v~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~-gKpvi~ 312 (527)
++.+++.|.+.+ ..+.+.+--+.... +|++++++-.|.|+.+-.+ +.....+...|.++ ++|.|.
T Consensus 54 a~~~~~~l~~ln--p~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~----------~~~r~~i~~~~~~~~~ip~i~ 119 (174)
T cd01487 54 VEALKENLREIN--PFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDN----------AETKAMLAESLLGNKNKPVVC 119 (174)
T ss_pred HHHHHHHHHHHC--CCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHHCCCCEEE
Confidence 566667777776 66666554444433 6788888888888876222 24556677777776 999997
No 460
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=32.15 E-value=1.7e+02 Score=24.41 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=29.5
Q ss_pred CcEEeeccc-hhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCCeEEEEEE
Q 036921 128 SQVLPINFD-GLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGNDVTCVIK 180 (527)
Q Consensus 128 ~~~i~v~~~-~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~~v~~~v~ 180 (527)
...+.+..+ ..+..+.+|+.|-+| | +.|.| .++.++.+...+.
T Consensus 19 ~~~~~i~~~~~~~~~~~~g~SIavn-----G-vcLTV----~~~~~~~f~~~l~ 62 (85)
T PF00677_consen 19 SQRLRIEIPDKILSDLKIGGSIAVN-----G-VCLTV----TDINEDWFEVDLI 62 (85)
T ss_dssp EEEEEEEESTGGGGTG-TTSEEEET-----T-EEEEE----EEEETTEEEEEEE
T ss_pred CEEEEEEcCHHHHhhCccCcEEEEC-----C-eeeEE----EEecCCEEEEech
Confidence 334555555 678899999999999 7 45667 4557777776654
No 461
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=31.93 E-value=4.6e+02 Score=25.02 Aligned_cols=119 Identities=21% Similarity=0.207 Sum_probs=67.0
Q ss_pred hHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCC---C--
Q 036921 208 DKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRG---N-- 282 (527)
Q Consensus 208 D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRg---D-- 282 (527)
+.+.+.+.+.+.++|+|=+..-++.+.++++++.+ + ..+.....+-+....+.....-..+|.+++.-. +
T Consensus 61 ~~~~i~~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~---~--~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~G 135 (203)
T cd00405 61 DLEEILEIAEELGLDVVQLHGDESPEYCAQLRARL---G--LPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGG 135 (203)
T ss_pred CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc---C--CcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCC
Confidence 34444445678899999998878888888887655 2 222211444443333222222234699988432 2
Q ss_pred -CcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhC-CcEEEeCC--ccccC
Q 036921 283 -LGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDG-SDAILLGA--ETLRG 353 (527)
Q Consensus 283 -Lg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g-~D~imLs~--Eta~G 353 (527)
-|...+++.+..+. ..+|++. ..+ .| .++..++..| +|++-+++ |++-|
T Consensus 136 g~g~~~~~~~l~~~~---------~~~PvilaGGI--------~~-----~Nv~~~i~~~~~~gvdv~S~ie~~pg 189 (203)
T cd00405 136 GTGKTFDWSLLRGLA---------SRKPVILAGGL--------TP-----DNVAEAIRLVRPYGVDVSSGVETSPG 189 (203)
T ss_pred CCcceEChHHhhccc---------cCCCEEEECCC--------Ch-----HHHHHHHHhcCCCEEEcCCcccCCCC
Confidence 13444544432221 5689998 653 22 3445666667 88877754 44445
No 462
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=31.63 E-value=5.6e+02 Score=25.96 Aligned_cols=90 Identities=9% Similarity=0.039 Sum_probs=52.0
Q ss_pred hhcccccccEEEec------CCCCHHHHHHHHHHHHHcCCCCCceEEEeecC---hHhHhhHHHHHHh-CCEEEEeCCCC
Q 036921 214 SWGVQNKIDFLSLS------YTRHAEDVRQAREYLSKLGDLSQTQIFAKIEN---IEGLTHFDEILQA-ADGIILSRGNL 283 (527)
Q Consensus 214 ~~~~~~g~d~I~~s------fV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt---~~av~nldeI~~~-sDgImIaRgDL 283 (527)
+|.++.|+|+|++. +--|.++-.++.+...+.. . .|++.+-+ .++++-...--+. +||+|+.+-.+
T Consensus 27 ~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~--~--~vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~P~y 102 (279)
T cd00953 27 ENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDIT--D--KVIFQVGSLNLEESIELARAAKSFGIYAIASLPPYY 102 (279)
T ss_pred HHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHc--C--CEEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 47788999999873 3445566555554443332 2 26777743 3333333322222 39999876554
Q ss_pred cCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 284 GIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 284 g~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
-...+.+.+....+.|.+ ..|+++
T Consensus 103 ~~~~~~~~i~~yf~~v~~-----~lpv~i 126 (279)
T cd00953 103 FPGIPEEWLIKYFTDISS-----PYPTFI 126 (279)
T ss_pred CCCCCHHHHHHHHHHHHh-----cCCEEE
Confidence 322234566666666666 689887
No 463
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=31.60 E-value=74 Score=31.33 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHcCCCeEEeecCCCCH----------HHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 036921 41 RSVDVISGCLKAGMSVARFDFSWGNT----------EYHQETLENLKAAVKTTKKLCAVMLDTVGP 96 (527)
Q Consensus 41 ~~~~~l~~l~~~G~~v~RiN~shg~~----------e~~~~~i~~ir~~~~~~~~~v~i~~Dl~Gp 96 (527)
...+.++.|-..|+|..||-+..... +...+.++++=+++++.| +.+++|+-+.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~g--i~vild~h~~ 85 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYG--IYVILDLHNA 85 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT---EEEEEEEES
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCC--CeEEEEeccC
Confidence 56788999999999999999996332 223344444444455566 6668887753
No 464
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=31.48 E-value=5e+02 Score=25.30 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=56.7
Q ss_pred hcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh----CCEEEEeCCCCcCCCCch
Q 036921 215 WGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA----ADGIILSRGNLGIDLPPE 290 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~----sDgImIaRgDLg~e~~~~ 290 (527)
.+++.|+||+..|. .+.+-++..+ . .++.++.-..| ..|+.++ +|.+-+-+.+ .+|++
T Consensus 78 ~a~~aGA~fivsp~-~~~~v~~~~~----~----~~~~~~~G~~t------~~E~~~A~~~Gad~vk~Fpa~---~~G~~ 139 (206)
T PRK09140 78 RLADAGGRLIVTPN-TDPEVIRRAV----A----LGMVVMPGVAT------PTEAFAALRAGAQALKLFPAS---QLGPA 139 (206)
T ss_pred HHHHcCCCEEECCC-CCHHHHHHHH----H----CCCcEEcccCC------HHHHHHHHHcCCCEEEECCCC---CCCHH
Confidence 45899999999885 3333333322 2 33455554444 4444444 5888774432 34544
Q ss_pred hHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCcc
Q 036921 291 KVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET 350 (527)
Q Consensus 291 ~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Et 350 (527)
.+..+.+.+ . ..+|++- ..+ ...++..+...|+|++-+++.-
T Consensus 140 ~l~~l~~~~----~-~~ipvvaiGGI-------------~~~n~~~~~~aGa~~vav~s~l 182 (206)
T PRK09140 140 GIKALRAVL----P-PDVPVFAVGGV-------------TPENLAPYLAAGAAGFGLGSAL 182 (206)
T ss_pred HHHHHHhhc----C-CCCeEEEECCC-------------CHHHHHHHHHCCCeEEEEehHh
Confidence 432222111 1 2588876 442 2356677888899999987543
No 465
>PRK07695 transcriptional regulator TenI; Provisional
Probab=31.45 E-value=1.3e+02 Score=28.73 Aligned_cols=35 Identities=9% Similarity=-0.017 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHH
Q 036921 44 DVISGCLKAGMSVARFDFSWGNTEYHQETLENLKA 78 (527)
Q Consensus 44 ~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~ 78 (527)
..+.+++++|++.+-|.--+.+.++..+.++.+++
T Consensus 18 ~~~~~~~~~g~~~iqlR~k~~~~~~~~~~~~~l~~ 52 (201)
T PRK07695 18 VAVAMQIHSEVDYIHIREREKSAKELYEGVESLLK 52 (201)
T ss_pred HHHHHHHhCCCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence 33445899999999999999999988888877774
No 466
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=31.29 E-value=1.1e+02 Score=28.42 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=60.0
Q ss_pred hcccccccEEEecCCCCH------HHHHHHHHHHHHcCCCCCceEEE---eec--------------ChHhHhhHHHHHH
Q 036921 215 WGVQNKIDFLSLSYTRHA------EDVRQAREYLSKLGDLSQTQIFA---KIE--------------NIEGLTHFDEILQ 271 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~s~------~dv~~lr~~l~~~~~~~~~~Iia---KIE--------------t~~av~nldeI~~ 271 (527)
++.++|+++|=+.+.... +++.++++++.+.| +.|.+ ... ..++++.+.+.++
T Consensus 3 ~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~g----l~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~ 78 (213)
T PF01261_consen 3 AAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYG----LKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAID 78 (213)
T ss_dssp HHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTT----CEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcC----CeEEEEecccccccccccccCcchhhHHHHHHHHHHHH
Confidence 456788888887765543 35788899898876 33222 111 1334666777766
Q ss_pred hC-----CEEEEeCC--CCcCCCCc----hhHHHHHHHHHHHHHHcCCcEEE
Q 036921 272 AA-----DGIILSRG--NLGIDLPP----EKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 272 ~s-----DgImIaRg--DLg~e~~~----~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
.+ +.+.+..| +....... +.+...-+++...|.++|.-+.+
T Consensus 79 ~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 79 LAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 54 78888877 33333333 46666667888888888977665
No 467
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=31.26 E-value=6.2e+02 Score=26.34 Aligned_cols=139 Identities=15% Similarity=0.180 Sum_probs=78.9
Q ss_pred CCCCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHH---HHHHHHcCCCCCceEEEeec--ChHhHhhHHHHHHh--C
Q 036921 201 LPTLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQA---REYLSKLGDLSQTQIFAKIE--NIEGLTHFDEILQA--A 273 (527)
Q Consensus 201 lp~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~l---r~~l~~~~~~~~~~IiaKIE--t~~av~nldeI~~~--s 273 (527)
+..+|+.-.+.+ +.+.|+++....||.....+..- +..+.... ....++.+|- +++.+...-+++.. .
T Consensus 17 M~g~td~~fR~l---~~~~g~~~~~temvs~~~~~~~~~~~~~~~~~~~--~~~~~~vQl~g~~~~~~~~aa~~~~~~g~ 91 (321)
T PRK10415 17 MAGITDRPFRTL---CYEMGAGLTVSEMMSSNPQVWESDKSRLRMVHID--EPGIRTVQIAGSDPKEMADAARINVESGA 91 (321)
T ss_pred CCCCCcHHHHHH---HHHHCCCEEEEccEEcchhhhcCHhHHHHhccCc--cCCCEEEEEeCCCHHHHHHHHHHHHHCCC
Confidence 345666555544 46899999999999886543211 11121111 3345678884 34444333344332 2
Q ss_pred CEEEEeCCCCcCCCCchhH------------HHHHHHHHHHHHH-cCCcEEE-ecchhhhhcCCCCChHhhhhHHH-HHH
Q 036921 274 DGIILSRGNLGIDLPPEKV------------FLFQKAALYKCNM-AGKPAVV-TRVVDSMTDNLRPTRAEATDVAN-AVL 338 (527)
Q Consensus 274 DgImIaRgDLg~e~~~~~v------------~~~qk~Ii~~c~~-~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~n-av~ 338 (527)
|+| ||.+.+|..++ |..-++|+++.++ .++|+.+ ... .-.++..+..+++. +..
T Consensus 92 d~I-----dlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~------G~~~~~~~~~~~a~~le~ 160 (321)
T PRK10415 92 QII-----DINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRT------GWAPEHRNCVEIAQLAED 160 (321)
T ss_pred CEE-----EEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEc------cccCCcchHHHHHHHHHH
Confidence 555 44455664322 5556677777755 4789888 541 11223334555655 456
Q ss_pred hCCcEEEeCCccccCCC
Q 036921 339 DGSDAILLGAETLRGLY 355 (527)
Q Consensus 339 ~g~D~imLs~Eta~G~y 355 (527)
.|+|++.+.+-|..+.|
T Consensus 161 ~G~d~i~vh~rt~~~~~ 177 (321)
T PRK10415 161 CGIQALTIHGRTRACLF 177 (321)
T ss_pred hCCCEEEEecCcccccc
Confidence 79999999988865544
No 468
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=31.25 E-value=4.5e+02 Score=27.40 Aligned_cols=129 Identities=13% Similarity=0.175 Sum_probs=71.2
Q ss_pred cccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhC--CEEEEe-CCCCcCC------
Q 036921 216 GVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAA--DGIILS-RGNLGID------ 286 (527)
Q Consensus 216 ~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~s--DgImIa-RgDLg~e------ 286 (527)
..+.|+|+|-.|-+.++.| ++....+.. .+.++++= ..|++|=+... -.=||+ -|+.|.-
T Consensus 92 L~~~GvDiID~Te~lrpad--~~~~~~K~~---f~~~fmad------~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av 160 (293)
T PRK04180 92 LEALGVDYIDESEVLTPAD--EEYHIDKWD---FTVPFVCG------ARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAV 160 (293)
T ss_pred HHHcCCCEEeccCCCCchH--HHHHHHHHH---cCCCEEcc------CCCHHHHHHHHHCCCCeeeccCCCCCccHHHHH
Confidence 3689999999999999933 444444432 34666663 44565555543 122332 1222110
Q ss_pred ---------------CCchhHHHH------HHHHHHHH-HHcCCcEE--E-ecchhhhhcCCCCChHhhhhHHHHHHhCC
Q 036921 287 ---------------LPPEKVFLF------QKAALYKC-NMAGKPAV--V-TRVVDSMTDNLRPTRAEATDVANAVLDGS 341 (527)
Q Consensus 287 ---------------~~~~~v~~~------qk~Ii~~c-~~~gKpvi--~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~ 341 (527)
+.-+.+... --.+++.. +....|++ . .. .-|.+ |+......|+
T Consensus 161 ~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGG---------I~TPe---daa~vme~GA 228 (293)
T PRK04180 161 RHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGG---------IATPA---DAALMMQLGA 228 (293)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCC---------CCCHH---HHHHHHHhCC
Confidence 111111110 00223333 33468887 3 43 22444 4455666799
Q ss_pred cEEEeCCccccCCChHHHHHHHHHHH
Q 036921 342 DAILLGAETLRGLYPVETISIVGKIC 367 (527)
Q Consensus 342 D~imLs~Eta~G~yP~e~V~~~~~i~ 367 (527)
|++++.+.-.....|.+.++.+.+..
T Consensus 229 dgVaVGSaI~ks~dP~~~akafv~ai 254 (293)
T PRK04180 229 DGVFVGSGIFKSGDPEKRARAIVEAT 254 (293)
T ss_pred CEEEEcHHhhcCCCHHHHHHHHHHHH
Confidence 99999877777778988887766654
No 469
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=31.11 E-value=6.4e+02 Score=26.42 Aligned_cols=139 Identities=16% Similarity=0.177 Sum_probs=88.6
Q ss_pred CCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCC-CCceE---------EEeecChHhHhhHHHHHHh
Q 036921 203 TLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDL-SQTQI---------FAKIENIEGLTHFDEILQA 272 (527)
Q Consensus 203 ~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~-~~~~I---------iaKIEt~~av~nldeI~~~ 272 (527)
.+|..|.++|.++|.+.|+. ++|-+..+.....+.....+.+.. ..... .--+.++++.+=+++++..
T Consensus 71 ~YT~~di~elv~yA~~rgI~--vIPEiD~PGH~~a~~~~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E 148 (329)
T cd06568 71 YYTQEDYKDIVAYAAERHIT--VVPEIDMPGHTNAALAAYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRE 148 (329)
T ss_pred cCCHHHHHHHHHHHHHcCCE--EEEecCCcHHHHHHHHhChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHH
Confidence 57999999999899999998 578999999999876543222110 10000 1134466666655555554
Q ss_pred ------CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhh---------hhHHHH
Q 036921 273 ------ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEA---------TDVANA 336 (527)
Q Consensus 273 ------sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv---------~Dv~na 336 (527)
+..|=|| ||=....+.+......+++....+++||.+++ ..++.. +.|...-+ ..+..+
T Consensus 149 ~~~~f~~~~iHiG-gDE~~~~~~~~~~~f~~~~~~~v~~~Gk~~~~W~d~~~~----~l~~~~iv~~W~~~~~~~~~~~~ 223 (329)
T cd06568 149 LAALTPGPYIHIG-GDEAHSTPHDDYAYFVNRVRAIVAKYGKTPVGWQEIARA----DLPAGTVAQYWSDRAPDADAAAA 223 (329)
T ss_pred HHHhCCCCeEEEe-cccCCCCchHHHHHHHHHHHHHHHHCCCeEEEECccccc----CCCCCeEEEECCCCCCchHHHHH
Confidence 2567777 55444445566667788999999999999999 877532 23322111 234556
Q ss_pred HHhCCcEEEeCC
Q 036921 337 VLDGSDAILLGA 348 (527)
Q Consensus 337 v~~g~D~imLs~ 348 (527)
+..|...|+-.+
T Consensus 224 ~~~G~~vI~s~~ 235 (329)
T cd06568 224 LDKGAKVILSPA 235 (329)
T ss_pred HHCCCCEEEeCC
Confidence 666777666654
No 470
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=31.02 E-value=5.4e+02 Score=26.32 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=49.3
Q ss_pred CCEEEEe-CCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCcc
Q 036921 273 ADGIILS-RGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET 350 (527)
Q Consensus 273 sDgImIa-RgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Et 350 (527)
.||+++. -.-=+..+..++-..+-+..++.+ +-..|+++ +. ..|+.-+.-.-.|...|+|++|+..=-
T Consensus 40 v~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~g~~pvi~gv~---------~~t~~ai~~a~~a~~~Gadav~~~pP~ 109 (296)
T TIGR03249 40 LEALFAAGGTGEFFSLTPAEYEQVVEIAVSTA-KGKVPVYTGVG---------GNTSDAIEIARLAEKAGADGYLLLPPY 109 (296)
T ss_pred CCEEEECCCCcCcccCCHHHHHHHHHHHHHHh-CCCCcEEEecC---------ccHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 4999984 111223444454444444444432 23468887 52 113333333444677899999997543
Q ss_pred ccCCChHHHHHHHHHHHHHHh
Q 036921 351 LRGLYPVETISIVGKICAEAE 371 (527)
Q Consensus 351 a~G~yP~e~V~~~~~i~~~aE 371 (527)
-...-+-+.+++.+.|+..+.
T Consensus 110 y~~~s~~~i~~~f~~v~~a~~ 130 (296)
T TIGR03249 110 LINGEQEGLYAHVEAVCESTD 130 (296)
T ss_pred CCCCCHHHHHHHHHHHHhccC
Confidence 322234677888888877654
No 471
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=30.95 E-value=2.2e+02 Score=28.48 Aligned_cols=65 Identities=18% Similarity=0.232 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE
Q 036921 235 VRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 235 v~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
++.+++.|.+.+ .++.|.+.-+... -+|++++++..|.|+.+-.+ +..+..+-+.|+++++|++.
T Consensus 88 a~~a~~~l~~ln--p~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D~----------~~~r~~ln~~~~~~~ip~v~ 152 (245)
T PRK05690 88 VESARAALARIN--PHIAIETINARLD-DDELAALIAGHDLVLDCTDN----------VATRNQLNRACFAAKKPLVS 152 (245)
T ss_pred HHHHHHHHHHHC--CCCEEEEEeccCC-HHHHHHHHhcCCEEEecCCC----------HHHHHHHHHHHHHhCCEEEE
Confidence 444555566666 6666655443332 25778888888988876221 24567888999999999886
No 472
>PLN02535 glycolate oxidase
Probab=30.95 E-value=84 Score=33.65 Aligned_cols=61 Identities=11% Similarity=0.204 Sum_probs=40.0
Q ss_pred hcccccccEEEecCCC---------CHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh----CCEEEEeCC
Q 036921 215 WGVQNKIDFLSLSYTR---------HAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA----ADGIILSRG 281 (527)
Q Consensus 215 ~~~~~g~d~I~~sfV~---------s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~----sDgImIaRg 281 (527)
.+.+.|+|+|.+|... +.+-+.++++.+ + .++.||+- -||.+-.+|+++ +|+++|||.
T Consensus 239 ~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av---~--~~ipVi~d----GGIr~g~Dv~KALalGA~aV~vGr~ 309 (364)
T PLN02535 239 KAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAV---G--GRVPVLLD----GGVRRGTDVFKALALGAQAVLVGRP 309 (364)
T ss_pred HHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHH---h--cCCCEEee----CCCCCHHHHHHHHHcCCCEEEECHH
Confidence 4679999999998322 233334443333 3 45666652 577777777775 699999987
Q ss_pred CCc
Q 036921 282 NLG 284 (527)
Q Consensus 282 DLg 284 (527)
=|-
T Consensus 310 ~l~ 312 (364)
T PLN02535 310 VIY 312 (364)
T ss_pred HHh
Confidence 764
No 473
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=30.67 E-value=1.7e+02 Score=29.36 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=36.8
Q ss_pred HHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEEecchhhhhcCCCCChHhhhhHHHHHHhCCcEE
Q 036921 266 FDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVVTRVVDSMTDNLRPTRAEATDVANAVLDGSDAI 344 (527)
Q Consensus 266 ldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~i 344 (527)
++.+++. .|+|||| |=+|+. ...-..+++++++..+|++. .|.. .+.+..++|++
T Consensus 25 ~~~~~~~gtdai~vG-GS~~vt------~~~~~~~v~~ik~~~lPvil-----------fp~~------~~~i~~~aDa~ 80 (232)
T PRK04169 25 LEAICESGTDAIIVG-GSDGVT------EENVDELVKAIKEYDLPVIL-----------FPGN------IEGISPGADAY 80 (232)
T ss_pred HHHHHhcCCCEEEEc-CCCccc------hHHHHHHHHHHhcCCCCEEE-----------eCCC------ccccCcCCCEE
Confidence 3555554 4999999 555544 13334566777778899996 3433 23455689998
Q ss_pred Ee
Q 036921 345 LL 346 (527)
Q Consensus 345 mL 346 (527)
+.
T Consensus 81 l~ 82 (232)
T PRK04169 81 LF 82 (232)
T ss_pred EE
Confidence 76
No 474
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=30.61 E-value=2e+02 Score=29.57 Aligned_cols=55 Identities=16% Similarity=0.061 Sum_probs=45.6
Q ss_pred eEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCC
Q 036921 30 TKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKK 85 (527)
Q Consensus 30 tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~ 85 (527)
..++.-+ ..+.+.+.+++.+++|.+..-|..||-+.++..+....+++.++.+|.
T Consensus 75 vpv~lhl-DH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv 129 (282)
T TIGR01859 75 VPVALHL-DHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGV 129 (282)
T ss_pred CeEEEEC-CCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3444444 445579999999999999999999999999999998999888887773
No 475
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=30.46 E-value=3.1e+02 Score=26.39 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEe
Q 036921 295 FQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILL 346 (527)
Q Consensus 295 ~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imL 346 (527)
+....++.|+++|+++.+ |- =+ ..++..+...|+|+++-
T Consensus 187 ~~~~~v~~~~~~g~~v~~wTv----------n~---~~~~~~~~~~gVdgiiT 226 (229)
T cd08562 187 LTEEQVKALKDAGYKLLVYTV----------ND---PARAAELLEWGVDAIFT 226 (229)
T ss_pred CCHHHHHHHHHCCCEEEEEeC----------CC---HHHHHHHHHCCCCEEEc
Confidence 456899999999999999 84 11 23456777789999864
No 476
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=30.45 E-value=8e+02 Score=27.37 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=84.0
Q ss_pred ceEEEeecChHhHhh---------HHHHHHh--CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhh
Q 036921 251 TQIFAKIENIEGLTH---------FDEILQA--ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDS 318 (527)
Q Consensus 251 ~~IiaKIEt~~av~n---------ldeI~~~--sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeS 318 (527)
..|+.|.|+.+-.-- +..+.+. ..||+-+ .-| ..=.-+...|+..|.|+.+ .
T Consensus 32 ~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV~a------SaG-----Nha~~vA~aa~~~Gi~~~Ivm----- 95 (499)
T TIGR01124 32 NRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAA------SAG-----NHAQGVAFSAARLGLKALIVM----- 95 (499)
T ss_pred CEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEEEE------CCC-----HHHHHHHHHHHHcCCCEEEEE-----
Confidence 368999998755421 2222111 2465543 222 2233567789999999876 2
Q ss_pred hhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhhhhhhhcccCCCCChHHHHH
Q 036921 319 MTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLYFKKTVKCVGEPMTHLESIA 398 (527)
Q Consensus 319 M~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia 398 (527)
|..+.-..+...-..|++.++- + ...-++.+...+++++ ....|-..|.+ | .....-.
T Consensus 96 ------P~~tp~~Kv~~~r~~GA~Vvl~-g-----~~~d~a~~~a~~la~~--~g~~~i~p~~~-------~-~~i~G~g 153 (499)
T TIGR01124 96 ------PETTPDIKVDAVRGFGGEVVLH-G-----ANFDDAKAKAIELSQE--KGLTFIHPFDD-------P-LVIAGQG 153 (499)
T ss_pred ------CCCCCHHHHHHHHhCCCEEEEe-C-----cCHHHHHHHHHHHHHh--cCCEeeCCCCC-------h-HHHHhhH
Confidence 2111122233444569987654 2 2346777666665543 11112111110 0 1122223
Q ss_pred HHHHHHHHhcC--CcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 399 SSAVRAAIKVK--ASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 399 ~~av~~a~~~~--a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
.-+.++.++++ .++|||..-+|.++.-++. .+|...||++-+
T Consensus 154 tig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep 201 (499)
T TIGR01124 154 TLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEP 201 (499)
T ss_pred HHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 34566777764 7999999999988665544 579999999843
No 477
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=30.40 E-value=3.7e+02 Score=28.78 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=25.4
Q ss_pred HcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCc
Q 036921 305 MAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAE 349 (527)
Q Consensus 305 ~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~E 349 (527)
..+.|+|. ..+ ---.||..|+..|||++|+..-
T Consensus 287 ~~~~~vi~dGGI------------r~g~Dv~KALaLGA~aV~iGr~ 320 (361)
T cd04736 287 ATYKPVLIDSGI------------RRGSDIVKALALGANAVLLGRA 320 (361)
T ss_pred HhCCeEEEeCCC------------CCHHHHHHHHHcCCCEEEECHH
Confidence 34699998 653 1347999999999999998643
No 478
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=30.30 E-value=6.1e+02 Score=30.51 Aligned_cols=123 Identities=11% Similarity=0.135 Sum_probs=79.2
Q ss_pred hhcccccccEEEecCCCCHHHHHHHHHHHHHcCC-----------C-C--------CceEEEeecChHhHhhHHHHHH--
Q 036921 214 SWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGD-----------L-S--------QTQIFAKIENIEGLTHFDEILQ-- 271 (527)
Q Consensus 214 ~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~-----------~-~--------~~~IiaKIEt~~av~nldeI~~-- 271 (527)
+.|.+.|.+.|++.=-.+..-+.++.+.+...|. . . ...++.--++.+|..||-.+..
T Consensus 26 ~~A~~~G~~aiAiTDh~~~~g~~~f~~~~~~~gik~I~G~E~~~~~~~~~~~~~~~~~~lvLLAkN~~GY~NL~kL~S~a 105 (874)
T PRK09532 26 DRAIELGMPAIALTDHGVMYGAIELLKVCRNKGIKPIIGNEMYVINGDIEKQKRRRKYHQVVLAKNTQGYKNLVKLTTIS 105 (874)
T ss_pred HHHHHCCCCEEEEecCCChhhHHHHHHHHHHcCCeEEEEEEEEecCCCcccccccccceeEEEecCHHHHHHHHHHHhHH
Confidence 4678999999999887777666666665544331 0 0 0123334468889999966653
Q ss_pred -----------------------hCCEEEEeCCCCcCCCC-------------------------------c---hhHHH
Q 036921 272 -----------------------AADGIILSRGNLGIDLP-------------------------------P---EKVFL 294 (527)
Q Consensus 272 -----------------------~sDgImIaRgDLg~e~~-------------------------------~---~~v~~ 294 (527)
.++|+++.-|-++-+++ . ..=..
T Consensus 106 ~~~~~~~~~~~~~P~i~~e~L~~~~~gLi~lsg~~~g~~~~~l~~~~~~~a~~~~~~~~~~fg~~~YLEIq~~g~~~e~~ 185 (874)
T PRK09532 106 HLQGVQGKGIFARPCINKELLEQYHEGLIVTSACLGGEIPQAILSGRPDAARKVAKWYKKLFGDDFYLEIQDHGSQEDRI 185 (874)
T ss_pred HHhcccccCccCCCcCCHHHHHhcCCCeEEEeCCccchHHHHHhCCCHHHHHHHHHHHHHhcCCcEEEEeCCCCChHHHH
Confidence 34777775443322222 1 00112
Q ss_pred HHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCC
Q 036921 295 FQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGS 341 (527)
Q Consensus 295 ~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~ 341 (527)
..+.+++.|++.|+|++. .. +.-..|..++..|+..++..|.
T Consensus 186 ~n~~Li~lAkk~giplVATnD-----vhY~~~eD~~~hdvL~~i~~g~ 228 (874)
T PRK09532 186 VNVEIVKIARELGIKIIATND-----SHFISCYDVEAHDALLCIQTGK 228 (874)
T ss_pred HHHHHHHHHHHhCCCEEEccC-----CcccCHhHHHHHHHHHHHhCCC
Confidence 336799999999999988 33 2234688899999999998774
No 479
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=30.25 E-value=4.9e+02 Score=27.45 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=87.9
Q ss_pred CCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCC-CCc---------eEEEeecChHhHhhHHHHHHh
Q 036921 203 TLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDL-SQT---------QIFAKIENIEGLTHFDEILQA 272 (527)
Q Consensus 203 ~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~-~~~---------~IiaKIEt~~av~nldeI~~~ 272 (527)
.+|..|.++|.++|.+.|++ ++|-++++.....+.+...+.+.. ... .=.--+.++++++=+++|++.
T Consensus 82 ~YT~~di~eiv~yA~~rgI~--VIPEID~PGH~~a~l~~~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll~E 159 (357)
T cd06563 82 FYTQEEIREIVAYAAERGIT--VIPEIDMPGHALAALAAYPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVLDE 159 (357)
T ss_pred eECHHHHHHHHHHHHHcCCE--EEEecCCchhHHHHHHhCccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHHHH
Confidence 57999999999999999998 568899999998887654322210 000 001234566666655555543
Q ss_pred ------CCEEEEeCCCCcCCCCc------------------hhH-HHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCC
Q 036921 273 ------ADGIILSRGNLGIDLPP------------------EKV-FLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPT 326 (527)
Q Consensus 273 ------sDgImIaRgDLg~e~~~------------------~~v-~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~Pt 326 (527)
++.|-|| ||=.....+ .++ ....+++.+..+++||-+++ ..++..- .|+
T Consensus 160 ~~~lF~~~~iHiG-gDE~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~~i~W~d~~~~~----l~~ 234 (357)
T cd06563 160 VAELFPSPYIHIG-GDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMIGWDEILEGG----LPP 234 (357)
T ss_pred HHHhCCCCeEEEe-ccccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCEEEEeecccccC----CCC
Confidence 3567777 442222111 112 23556888888999999999 8876542 444
Q ss_pred hHhh------hhHHHHHHhCCcEEEeCCc
Q 036921 327 RAEA------TDVANAVLDGSDAILLGAE 349 (527)
Q Consensus 327 raEv------~Dv~nav~~g~D~imLs~E 349 (527)
..-+ .....++..|.+.|+-.+.
T Consensus 235 ~~iv~~W~~~~~~~~~~~~G~~vI~s~~~ 263 (357)
T cd06563 235 NATVMSWRGEDGGIKAAKQGYDVIMSPGQ 263 (357)
T ss_pred CcEEEECCCchHHHHHHHCCCCEEEeCCC
Confidence 3332 3456677888888876654
No 480
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=30.23 E-value=1.4e+02 Score=29.79 Aligned_cols=85 Identities=16% Similarity=0.240 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHh-CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-
Q 036921 235 VRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQA-ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV- 312 (527)
Q Consensus 235 v~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~-sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~- 312 (527)
++.+++.+.+.+ .++.|.+.-+... -+|+++++.. .|.|+.+=.+ +.....+.+.|+++++|+|.
T Consensus 67 ae~~~~~l~~in--P~~~V~~~~~~i~-~~~~~~l~~~~~D~VvdaiD~----------~~~k~~L~~~c~~~~ip~I~s 133 (231)
T cd00755 67 VEVMAERIRDIN--PECEVDAVEEFLT-PDNSEDLLGGDPDFVVDAIDS----------IRAKVALIAYCRKRKIPVISS 133 (231)
T ss_pred HHHHHHHHHHHC--CCcEEEEeeeecC-HhHHHHHhcCCCCEEEEcCCC----------HHHHHHHHHHHHHhCCCEEEE
Confidence 455566676666 5655554433322 2577777743 5877776222 23556789999999999986
Q ss_pred ecchhhhhcCCCCChHhhhhHHHH
Q 036921 313 TRVVDSMTDNLRPTRAEATDVANA 336 (527)
Q Consensus 313 Tq~LeSM~~~p~PtraEv~Dv~na 336 (527)
.. .-..-.||+-++.|++..
T Consensus 134 ~g----~g~~~dp~~i~i~di~~t 153 (231)
T cd00755 134 MG----AGGKLDPTRIRVADISKT 153 (231)
T ss_pred eC----CcCCCCCCeEEEccEecc
Confidence 22 233457999999998775
No 481
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.18 E-value=6.1e+02 Score=25.86 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=36.4
Q ss_pred CEEEEeCCCCcC-CCCchhHHHHHHHHHHHHHH-cCCcEEE--ecchhhhhcCCCCChHhh-hhHHHHHHhCCcEEEe
Q 036921 274 DGIILSRGNLGI-DLPPEKVFLFQKAALYKCNM-AGKPAVV--TRVVDSMTDNLRPTRAEA-TDVANAVLDGSDAILL 346 (527)
Q Consensus 274 DgImIaRgDLg~-e~~~~~v~~~qk~Ii~~c~~-~gKpvi~--Tq~LeSM~~~p~PtraEv-~Dv~nav~~g~D~imL 346 (527)
+.+++=||--+. .++.+ .+.-..+...++ .+.||++ ++-. -.|.-+ .....|+..|+||+|+
T Consensus 164 ~i~L~~rG~~t~~~Y~~~---~vdl~~i~~lk~~~~~pV~~D~sHs~--------G~~~~v~~~~~aAva~Ga~Gl~i 230 (266)
T PRK13398 164 NVVLCERGIRTFETYTRN---TLDLAAVAVIKELSHLPIIVDPSHAT--------GRRELVIPMAKAAIAAGADGLMI 230 (266)
T ss_pred eEEEEECCCCCCCCCCHH---HHHHHHHHHHHhccCCCEEEeCCCcc--------cchhhHHHHHHHHHHcCCCEEEE
Confidence 678888886434 44533 334444444444 4899997 5421 111111 3346688999999997
No 482
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=30.02 E-value=2.9e+02 Score=29.00 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=40.5
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHc--CCCeEEeecCCC--CHHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 036921 28 AMTKIVGTLGPKSRSVDVISGCLKA--GMSVARFDFSWG--NTEYHQETLENLKAAVKTTKKLCAVMLDTV 94 (527)
Q Consensus 28 ~~tkIi~TiGp~~~~~~~l~~l~~~--G~~v~RiN~shg--~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~ 94 (527)
.+..+-+|+ |.. +++.+.++++. |.+.+.+..+.. +.++-.+.++.+|++ .|..+.|++|-.
T Consensus 77 ~~vp~~~tv-~~~-~~e~~~~~~~~~~G~~~~KvKVg~~~~~~~~Di~rv~avRe~---lGpd~~LrvDAN 142 (327)
T PRK02901 77 DRVPVNATV-PAV-DAAQVPEVLARFPGCRTAKVKVAEPGQTLADDVARVNAVRDA---LGPDGRVRVDAN 142 (327)
T ss_pred CeEEeeEEe-CCC-CHHHHHHHHHHhCCCCEEEEEECCCCCCHHHHHHHHHHHHHh---cCCCCEEEEECC
Confidence 345566776 333 46778888886 999999998754 555555666666654 565556666654
No 483
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=29.99 E-value=4.2e+02 Score=27.89 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=26.0
Q ss_pred cCCcEEEEECCCcHH-HHHHHhhC---CCCCEEEEee
Q 036921 408 VKASVIICFTSSGRA-ARLIAKYR---PTMPVLSVVI 440 (527)
Q Consensus 408 ~~a~~Ivv~T~sG~t-A~~is~~R---P~~PIiAv~~ 440 (527)
.+-+.+||.+-||.| |-++..+- |..+||.+.+
T Consensus 179 ~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v 215 (323)
T COG2515 179 LKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDV 215 (323)
T ss_pred cCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEee
Confidence 556788888877766 88877777 9999998755
No 484
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.98 E-value=63 Score=33.37 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=29.1
Q ss_pred cCCcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 408 VKASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 408 ~~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
..++.++|.|.+|.||..+|. ..|.++.+.+|+
T Consensus 175 ~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~ltP 211 (287)
T PRK14077 175 YFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTP 211 (287)
T ss_pred EEcCEEEEeCCCchhHhHhhcCCcccCCCCCeEEEEe
Confidence 468999999999999999998 568999998865
No 485
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=29.97 E-value=3.1e+02 Score=27.90 Aligned_cols=128 Identities=16% Similarity=0.091 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHH--HhCCcEEEeCCccccCCChHHHHHHHHHHH
Q 036921 291 KVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAV--LDGSDAILLGAETLRGLYPVETISIVGKIC 367 (527)
Q Consensus 291 ~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav--~~g~D~imLs~Eta~G~yP~e~V~~~~~i~ 367 (527)
+....-+++++.++++|+|+|. -- ..-+|+-.+ ..+.++ ..|+|++-+++ ..|. .+|....
T Consensus 70 ~gi~~l~~~~~~~~~~g~~VilD~K------~~DIpnTv~--~~a~a~~~~~g~D~vTvh~--~~G~------d~l~~~~ 133 (261)
T TIGR02127 70 EGFKALEEVIAHARSLGLPVLADVK------RGDIGSTAS--AYAKAWLGHLHADALTVSP--YLGL------DSLRPFL 133 (261)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEee------ccChHHHHH--HHHHHHHhhcCCCEEEECC--cCCH------HHHHHHH
Confidence 3344556778999999999997 43 223442221 223333 35899998874 4553 3444444
Q ss_pred HHHhhc---c------ch--hhhhhhhhcccCCCCChHHHHHHHHHHHHHhc---CCcEEEEECCCcHHHHHHHhhCCCC
Q 036921 368 AEAEKV---F------NQ--DLYFKKTVKCVGEPMTHLESIASSAVRAAIKV---KASVIICFTSSGRAARLIAKYRPTM 433 (527)
Q Consensus 368 ~~aE~~---~------~~--~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~---~a~~Ivv~T~sG~tA~~is~~RP~~ 433 (527)
+.++.. . +. ...+++.. .....+..+.++.-|....... +...+||-.+++.-++.+-+..|..
T Consensus 134 ~~~~~~~~~v~VlvlTSnp~~~~lq~~~--~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~gAT~p~e~~~iR~~~~~~ 211 (261)
T TIGR02127 134 EYARANGAGIFVLVKTSNPGGADLQDLR--VSDGRTVYEEVAELAGELNESPGDCSSVGAVVGATSPGDLLRLRIEMPTA 211 (261)
T ss_pred HHHhhcCCEEEEEEeCCCCCHHHHhhhh--ccCCCCHHHHHHHHHHHhccccCcCCceEEEECCCCHHHHHHHHHhCCCC
Confidence 443321 0 11 00111110 0000122344444443322221 3688999888888777776666888
Q ss_pred CEE
Q 036921 434 PVL 436 (527)
Q Consensus 434 PIi 436 (527)
||+
T Consensus 212 ~il 214 (261)
T TIGR02127 212 PFL 214 (261)
T ss_pred eEE
Confidence 877
No 486
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=29.82 E-value=5.4e+02 Score=25.21 Aligned_cols=135 Identities=21% Similarity=0.145 Sum_probs=68.7
Q ss_pred HHHHHhhcccccccEEEecCCCC---------------HHHHHHHHHHHHHcCCCCCceEEEeecChHh----HhhHHHH
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRH---------------AEDVRQAREYLSKLGDLSQTQIFAKIENIEG----LTHFDEI 269 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s---------------~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~a----v~nldeI 269 (527)
.++++ .+.+.|+|.|.+++--+ .+.+.+..+.+.+.| ..+..-+|+.-. .+.+.++
T Consensus 77 ~~~i~-~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G----~~v~~~~~~~~~~~~~~~~l~~~ 151 (265)
T cd03174 77 EKGIE-RALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAG----LEVEGSLEDAFGCKTDPEYVLEV 151 (265)
T ss_pred hhhHH-HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC----CeEEEEEEeecCCCCCHHHHHHH
Confidence 44554 45789999999988665 233334444445544 455555554443 1222222
Q ss_pred HH---h--CCEEEEeCCCCcCCCCchhHHHHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcE
Q 036921 270 LQ---A--ADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDA 343 (527)
Q Consensus 270 ~~---~--sDgImIaRgDLg~e~~~~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~ 343 (527)
++ . +|.|.++ |-.-.+.++++...-+.+.+.... .|+.+ +| |. .--| +.....|+..|+|.
T Consensus 152 ~~~~~~~g~~~i~l~--Dt~G~~~P~~v~~li~~l~~~~~~--~~~~~H~H-------n~-~gla-~an~laA~~aG~~~ 218 (265)
T cd03174 152 AKALEEAGADEISLK--DTVGLATPEEVAELVKALREALPD--VPLGLHTH-------NT-LGLA-VANSLAALEAGADR 218 (265)
T ss_pred HHHHHHcCCCEEEec--hhcCCcCHHHHHHHHHHHHHhCCC--CeEEEEeC-------CC-CChH-HHHHHHHHHcCCCE
Confidence 22 2 3677764 333334444444443333333221 67776 64 11 1122 23344588889887
Q ss_pred EEeC----CccccCCChHHHHHH
Q 036921 344 ILLG----AETLRGLYPVETISI 362 (527)
Q Consensus 344 imLs----~Eta~G~yP~e~V~~ 362 (527)
|=-| || ..|+=|.|.+-.
T Consensus 219 id~s~~G~G~-~~Gn~~~e~~~~ 240 (265)
T cd03174 219 VDGSVNGLGE-RAGNAATEDLVA 240 (265)
T ss_pred EEeccccccc-cccCccHHHHHH
Confidence 6432 22 356667666543
No 487
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=29.77 E-value=75 Score=32.02 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=51.1
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhHhhHHHHHHhCCEEEEeCCCCcCCCC
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGLTHFDEILQAADGIILSRGNLGIDLP 288 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av~nldeI~~~sDgImIaRgDLg~e~~ 288 (527)
..++. ++..|.++|-+--.++. ...+...+ .+ .+..+++ +..+.+++++...|++.|+.| |+-...
T Consensus 42 la~l~--~~~~g~~~v~~~~~~~~------~~~i~~~~--pe-~~~~~~~--~~~~~~~~~~~~~davvig~G-l~~~~~ 107 (272)
T TIGR00196 42 LAALA--ALRAGAGLVTVAAPENV------ITLINSVS--PE-LIVHRLG--WKVDEDEELLERYDVVVIGPG-LGQDPS 107 (272)
T ss_pred HHHHH--HHHhCCCeEEEEEchhh------HHHHhhcC--CE-EEEecch--hhHHHHHhhhccCCEEEEcCC-CCCCHH
Confidence 45554 35668887776544322 11233332 22 2333343 466777888888899999877 543222
Q ss_pred chhHHHHHHHHHHHHHHcCCcEEE
Q 036921 289 PEKVFLFQKAALYKCNMAGKPAVV 312 (527)
Q Consensus 289 ~~~v~~~qk~Ii~~c~~~gKpvi~ 312 (527)
..++++.++++++|+++
T Consensus 108 -------~~~l~~~~~~~~~pvVl 124 (272)
T TIGR00196 108 -------FKKAVEEVLELDKPVVL 124 (272)
T ss_pred -------HHHHHHHHHhcCCCEEE
Confidence 56688888889999987
No 488
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=29.57 E-value=89 Score=33.32 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=37.4
Q ss_pred CHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 036921 42 SVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTV 94 (527)
Q Consensus 42 ~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~ 94 (527)
+.++|++|.++|.++.|+-.-. .+..+.+..|++.-.+.|.+++++.|+.
T Consensus 33 tv~QI~~L~~aGceivRvavp~---~~~a~al~~I~~~l~~~g~~iPlVADIH 82 (359)
T PF04551_consen 33 TVAQIKRLEEAGCEIVRVAVPD---MEAAEALKEIKKRLRALGSPIPLVADIH 82 (359)
T ss_dssp HHHHHHHHHHCT-SEEEEEE-S---HHHHHHHHHHHHHHHCTT-SS-EEEEES
T ss_pred HHHHHHHHHHcCCCEEEEcCCC---HHHHHHHHHHHHhhccCCCCCCeeeecC
Confidence 4688999999999999998754 4456777778777666788999999987
No 489
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.56 E-value=64 Score=32.90 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=29.4
Q ss_pred cCCcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 408 VKASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 408 ~~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
..++.++|.|.+|.||..+|. ..|.++.+.+|+
T Consensus 135 ~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~itP 171 (259)
T PRK00561 135 YRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIE 171 (259)
T ss_pred EecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEEEe
Confidence 468999999999999999998 578999999875
No 490
>PLN02535 glycolate oxidase
Probab=29.39 E-value=5.2e+02 Score=27.73 Aligned_cols=95 Identities=22% Similarity=0.233 Sum_probs=53.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCceEEEe-ecChHhHhhHHHHHHh-CCEEEEe-CCCCcCCCCchhHHHHHHHHHHHHHH-
Q 036921 230 RHAEDVRQAREYLSKLGDLSQTQIFAK-IENIEGLTHFDEILQA-ADGIILS-RGNLGIDLPPEKVFLFQKAALYKCNM- 305 (527)
Q Consensus 230 ~s~~dv~~lr~~l~~~~~~~~~~IiaK-IEt~~av~nldeI~~~-sDgImIa-RgDLg~e~~~~~v~~~qk~Ii~~c~~- 305 (527)
-|-++++.+++. .+.+|++| |-+++-. ...++. +|+|.+. .| |-.++.. +.....+.+...+
T Consensus 210 ~tW~~i~~lr~~-------~~~PvivKgV~~~~dA---~~a~~~GvD~I~vsn~G--Gr~~d~~--~~t~~~L~ev~~av 275 (364)
T PLN02535 210 LSWKDIEWLRSI-------TNLPILIKGVLTREDA---IKAVEVGVAGIIVSNHG--ARQLDYS--PATISVLEEVVQAV 275 (364)
T ss_pred CCHHHHHHHHhc-------cCCCEEEecCCCHHHH---HHHHhcCCCEEEEeCCC--cCCCCCC--hHHHHHHHHHHHHH
Confidence 466788877763 23567777 5454432 222222 5999884 12 2222211 1111222222222
Q ss_pred -cCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCcc
Q 036921 306 -AGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAET 350 (527)
Q Consensus 306 -~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Et 350 (527)
...|+|. ..+ ---.|+..++..|||++++..--
T Consensus 276 ~~~ipVi~dGGI------------r~g~Dv~KALalGA~aV~vGr~~ 310 (364)
T PLN02535 276 GGRVPVLLDGGV------------RRGTDVFKALALGAQAVLVGRPV 310 (364)
T ss_pred hcCCCEEeeCCC------------CCHHHHHHHHHcCCCEEEECHHH
Confidence 2589998 654 23579999999999999987544
No 491
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=29.15 E-value=3.5e+02 Score=29.62 Aligned_cols=156 Identities=18% Similarity=0.170 Sum_probs=85.8
Q ss_pred EeecChHhHhhHHHHHHhCCEEEEeCC--------CCcCCCCc----hhHHHHHHHHHHHHHHcCCcEEE-ecchhhh-h
Q 036921 255 AKIENIEGLTHFDEILQAADGIILSRG--------NLGIDLPP----EKVFLFQKAALYKCNMAGKPAVV-TRVVDSM-T 320 (527)
Q Consensus 255 aKIEt~~av~nldeI~~~sDgImIaRg--------DLg~e~~~----~~v~~~qk~Ii~~c~~~gKpvi~-Tq~LeSM-~ 320 (527)
||+.+.-++ ++.++..+|.|++|-| .-|.++|- ++....-++|++.|...|+++++ +...-+= .
T Consensus 215 aKvsdKi~v--l~~Ll~k~D~iligG~ma~tFL~A~~G~~iG~sl~E~~~i~~a~~il~~a~~~~~~I~lPvD~~v~~~~ 292 (417)
T PTZ00005 215 AKVADKIQL--IKNLLDKVDEMIIGGGMAFTFKKVLDNMPIGKSLFDEEGAKIVKEIMEKAKEKNVKIHLPVDFVCADKF 292 (417)
T ss_pred ccHHhHHHH--HHHHHHhcCEEEECcHHHHHHHHHhCCCccCccccChhhHHHHHHHHHHHHhcCCEEeCCceEEEeccc
Confidence 577665544 6777788899998622 22344443 35556667999999999999997 5543110 0
Q ss_pred cCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccchhhh--hhhhhcccCCCCChHHHHH
Q 036921 321 DNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQDLY--FKKTVKCVGEPMTHLESIA 398 (527)
Q Consensus 321 ~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~~~~--~~~~~~~~~~~~~~~~~ia 398 (527)
.+..+ +.++.+ .+.+- .|...|- +| -++++...++++.|...+|.-.+ |. .+.-..-+.+++
T Consensus 293 ~~~~~-~~~~~~-~~~ip--~~~~~lD----IG---p~Ti~~~~~~i~~akTV~wNGP~GvFE-----~~~F~~GT~~i~ 356 (417)
T PTZ00005 293 DNNAN-TKVVTD-KEGIP--DGWMGLD----AG---PKSIEEFAEAILRAKTIVWNGPQGVFE-----MPNFAKGSIAML 356 (417)
T ss_pred CCCCC-eEEecC-ccCCC--CCCEEec----cC---HHHHHHHHHHHhhCCEEEEECCCcccc-----CCcchHHHHHHH
Confidence 00111 111100 01111 1222233 44 36788999999999988887432 32 111123455666
Q ss_pred HHHHHHHHhcCCcEEEEECCCcHHHHHHHhhCCC
Q 036921 399 SSAVRAAIKVKASVIICFTSSGRAARLIAKYRPT 432 (527)
Q Consensus 399 ~~av~~a~~~~a~~Ivv~T~sG~tA~~is~~RP~ 432 (527)
.+..++. +.+|..| --.|.|+..+.++--.
T Consensus 357 ~aia~~t-~~~a~si---vGGGdt~aAi~~~g~~ 386 (417)
T PTZ00005 357 DAVVKAT-EKGAITI---VGGGDTASLVEKTGAA 386 (417)
T ss_pred HHHHHhc-cCCCEEE---EeCcHHHHHHHHcCCC
Confidence 6554422 2334333 3467888888876443
No 492
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=29.10 E-value=2.6e+02 Score=23.88 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=45.5
Q ss_pred CcEEeecCCEEEEeeCCC-CCCCCcEEeeccchhhhhcCCCCEEEEecccCCCceEEEEEEEEEEeeCC-eEEEEEEeCc
Q 036921 106 KAISLKADGSVVLTPDCG-QEATSQVLPINFDGLAKSVKKGDTIFIGQYLFTGSETTSVWLEVSEVKGN-DVTCVIKNTA 183 (527)
Q Consensus 106 ~~i~l~~G~~v~l~~~~~-~~~~~~~i~v~~~~l~~~v~~gd~i~id~~~~DG~i~l~V~l~~~~~~~~-~v~~~v~~~G 183 (527)
+.+.+.+|+.+.|..+.. ........+++.. ...+....++.++ .||.+.+.= +. ..|.+ ...|.+.+.+
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~--~~~i~~~~Ri~~~---~~GnL~fs~-v~--~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSD--LLHITQDERVSMG---QNGNLYFAN-VE--EQDSHPDYICHAHFPG 82 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCC--CccccccccEEEC---CCceEEEEE-Ee--hhhCCCCeEEEEEccc
Confidence 468999999999999742 1223445556432 2345567888886 368887764 43 33444 6999988754
No 493
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.07 E-value=58 Score=33.72 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=29.2
Q ss_pred cCCcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 408 VKASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 408 ~~a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
..++.++|.|.+|.||..+|. ..|.++.+.+|+
T Consensus 174 ~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltP 210 (292)
T PRK01911 174 YWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVITP 210 (292)
T ss_pred EeeceeEECCCCcHHHHHhhCCCcccCCCCCEEEEEe
Confidence 468999999999999999998 467899998875
No 494
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=29.06 E-value=72 Score=36.28 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=41.4
Q ss_pred CHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 036921 42 SVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLKAAVKTTKKLCAVMLDTV 94 (527)
Q Consensus 42 ~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir~~~~~~~~~v~i~~Dl~ 94 (527)
+.+++++|.++|.++.|+-.-- .+..+.+.+|++.....|.+++++.|+.
T Consensus 43 tv~Qi~~l~~aGceiVRvtv~~---~~~a~~l~~I~~~l~~~G~~iPLVADIH 92 (611)
T PRK02048 43 CVAQAKRIIDAGGEYVRLTTQG---VREAENLMNINIGLRSQGYMVPLVADVH 92 (611)
T ss_pred HHHHHHHHHHcCCCEEEEcCCC---HHHHHhHHHHHHHHhhcCCCCCEEEecC
Confidence 4689999999999999987643 4456778888888777899999999987
No 495
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=29.06 E-value=1.1e+02 Score=33.72 Aligned_cols=16 Identities=25% Similarity=-0.022 Sum_probs=10.8
Q ss_pred hhHHHHHHhCCcEEEe
Q 036921 331 TDVANAVLDGSDAILL 346 (527)
Q Consensus 331 ~Dv~nav~~g~D~imL 346 (527)
.|+..++..|+|++=+
T Consensus 268 eda~~a~~~GaD~lGf 283 (454)
T PRK09427 268 QDAKAAYDAGAVYGGL 283 (454)
T ss_pred HHHHHHHhCCCCEEee
Confidence 4556677778887655
No 496
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=28.98 E-value=5.8e+02 Score=26.56 Aligned_cols=138 Identities=12% Similarity=0.088 Sum_probs=81.5
Q ss_pred CCCHhhHHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCc-e------E---EEeecChHhHhhHHHHHHh
Q 036921 203 TLSDKDKEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQT-Q------I---FAKIENIEGLTHFDEILQA 272 (527)
Q Consensus 203 ~lt~~D~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~-~------I---iaKIEt~~av~nldeI~~~ 272 (527)
.+|..|.++|.++|.+.|+. ++|=++.+.....+.....+....... . + .--+-++++.+=+++|+..
T Consensus 64 ~yT~~di~elv~yA~~rgI~--vIPEId~PGH~~a~~~~ypel~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~~~l~~E 141 (311)
T cd06570 64 YYTQEQIREVVAYARDRGIR--VVPEIDVPGHASAIAVAYPELASGPGPYVIERGWGVFEPLLDPTNEETYTFLDNLFGE 141 (311)
T ss_pred ccCHHHHHHHHHHHHHcCCE--EEEeecCccchHHHHHhCHHhccCCCccccccccccCCCccCCCChhHHHHHHHHHHH
Confidence 58999999999999999997 578899999888765532221100000 0 0 0123345555555555553
Q ss_pred ------CCEEEEeCCCCcCCCCch---------------hHH----HHHHHHHHHHHHcCCcEEE-ecchhhhhcCCCCC
Q 036921 273 ------ADGIILSRGNLGIDLPPE---------------KVF----LFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPT 326 (527)
Q Consensus 273 ------sDgImIaRgDLg~e~~~~---------------~v~----~~qk~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~Pt 326 (527)
+.-|-|| ||=...-++. ... ...+++...++++||.+++ ..+++. ..|.
T Consensus 142 ~~~lF~~~~iHiG-gDE~~~~~W~~~p~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~Gk~~~~W~d~~~~----~l~~ 216 (311)
T cd06570 142 MAELFPDEYFHIG-GDEVDPKQWNENPRIQAFMKEHGLKDAAALQAYFNQRVEKILSKHGKKMIGWDEVLHP----DLPK 216 (311)
T ss_pred HHHhCCCCceEee-ccCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEecccccc----CCCC
Confidence 2466676 5422221221 111 2345788889999999999 887743 3333
Q ss_pred hHhh------hhHHHHHHhCCcEEEeC
Q 036921 327 RAEA------TDVANAVLDGSDAILLG 347 (527)
Q Consensus 327 raEv------~Dv~nav~~g~D~imLs 347 (527)
..-| .....++..|.+.|+-+
T Consensus 217 ~~iv~~W~~~~~~~~~~~~G~~vI~s~ 243 (311)
T cd06570 217 NVVIQSWRGHDSLGEAAKAGYQGILST 243 (311)
T ss_pred CeEEEEeCCchHHHHHHHCCCCEEEec
Confidence 2211 24566777788887743
No 497
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=28.90 E-value=1.2e+02 Score=30.81 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=41.9
Q ss_pred HHHHHhhcccccccEEEecCCCCHHHHHHHHHHHHHcCCCCCceEEEeecChHhH--hhHHHHHHh-CCEEEEe
Q 036921 209 KEVISSWGVQNKIDFLSLSYTRHAEDVRQAREYLSKLGDLSQTQIFAKIENIEGL--THFDEILQA-ADGIILS 279 (527)
Q Consensus 209 ~~di~~~~~~~g~d~I~~sfV~s~~dv~~lr~~l~~~~~~~~~~IiaKIEt~~av--~nldeI~~~-sDgImIa 279 (527)
.+++. .++..|+|+|.+-.+ ++++++++.+.+... .+++ ||=.-|+ +|+.++++. +|+|-++
T Consensus 191 ~eea~-~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~---~~i~----i~asGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 191 LEEAE-EALEAGADIIMLDNM-SPEELKEAVKLLKGL---PRVL----LEASGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred HHHHH-HHHHcCCCEEEECCC-CHHHHHHHHHHhccC---CCeE----EEEECCCCHHHHHHHHHcCCCEEEEc
Confidence 44454 357899999999876 568888877766432 1333 3333344 788888887 6999874
No 498
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=28.87 E-value=2.8e+02 Score=30.87 Aligned_cols=149 Identities=19% Similarity=0.185 Sum_probs=98.1
Q ss_pred CeEEEEEEeCcEecCCCcccccCCccccCCCCCHhhHHHHHhhcccccccEEEe---cCCCCHHHHHHHHHHHHHcCCCC
Q 036921 173 NDVTCVIKNTATLAGSLFTLHASQIRIELPTLSDKDKEVISSWGVQNKIDFLSL---SYTRHAEDVRQAREYLSKLGDLS 249 (527)
Q Consensus 173 ~~v~~~v~~~G~l~~~~kgvnlp~~~~~lp~lt~~D~~di~~~~~~~g~d~I~~---sfV~s~~dv~~lr~~l~~~~~~~ 249 (527)
+.++-++-+|.+ +..|=.||+..+ |+ ....++ ...-|+|.|-= ..+-|.+|+.++..-|++.+ +
T Consensus 236 ~~ieIKiaQGAK---PGeGG~Lpg~KV-----~~-~IA~~R--~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~--~ 302 (485)
T COG0069 236 DAIEIKIAQGAK---PGEGGQLPGEKV-----TP-EIAKTR--GSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEAN--P 302 (485)
T ss_pred ceEEEEeccCCC---CCCCCCCCCccC-----CH-HHHHhc--CCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcC--C
Confidence 456666666553 456667888775 33 245553 47788886642 35789999999999999886 4
Q ss_pred CceEEEeecChHhHhhHHH-HHHh-CCEEEEeCCCCcCCCCc-----------h-hHHHHHHHHHHHHHHcCCcEEE--e
Q 036921 250 QTQIFAKIENIEGLTHFDE-ILQA-ADGIILSRGNLGIDLPP-----------E-KVFLFQKAALYKCNMAGKPAVV--T 313 (527)
Q Consensus 250 ~~~IiaKIEt~~av~nlde-I~~~-sDgImIaRgDLg~e~~~-----------~-~v~~~qk~Ii~~c~~~gKpvi~--T 313 (527)
.-.|..|+=...+++-+.. .+++ +|.|.|.-.|=|.-..+ + -++.+++.+...-.. .|+.+. .
T Consensus 303 ~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glR-d~v~l~~~G 381 (485)
T COG0069 303 WAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLR-DKVKLIADG 381 (485)
T ss_pred CCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCc-ceeEEEecC
Confidence 5569999977777766655 3333 49999976665544432 2 556666666555544 555554 4
Q ss_pred cchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeC
Q 036921 314 RVVDSMTDNLRPTRAEATDVANAVLDGSDAILLG 347 (527)
Q Consensus 314 q~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs 347 (527)
++. | -.||+-|+..|||.+-..
T Consensus 382 gl~---------T---g~DVaka~aLGAd~v~~g 403 (485)
T COG0069 382 GLR---------T---GADVAKAAALGADAVGFG 403 (485)
T ss_pred Ccc---------C---HHHHHHHHHhCcchhhhc
Confidence 432 2 358999999999986543
No 499
>PRK06110 hypothetical protein; Provisional
Probab=28.86 E-value=6.7e+02 Score=25.93 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=65.3
Q ss_pred HHHHHHHHcCCcEEE-ecchhhhhcCCCCChHhhhhHHHHHHhCCcEEEeCCccccCCChHHHHHHHHHHHHHHhhccch
Q 036921 298 AALYKCNMAGKPAVV-TRVVDSMTDNLRPTRAEATDVANAVLDGSDAILLGAETLRGLYPVETISIVGKICAEAEKVFNQ 376 (527)
Q Consensus 298 ~Ii~~c~~~gKpvi~-Tq~LeSM~~~p~PtraEv~Dv~nav~~g~D~imLs~Eta~G~yP~e~V~~~~~i~~~aE~~~~~ 376 (527)
-+...|+..|.|+.+ .- ..+..+ -....-..|++.+.. |....++++...+..++ +..+ +
T Consensus 84 alA~~a~~~G~~~~ivvp---------~~~~~~--k~~~i~~~GA~V~~~------~~~~~~~~~~a~~~~~~-~~~~-~ 144 (322)
T PRK06110 84 SVAFAARRHGLAATIVVP---------HGNSVE--KNAAMRALGAELIEH------GEDFQAAREEAARLAAE-RGLH-M 144 (322)
T ss_pred HHHHHHHHcCCCEEEEEc---------CCCCHH--HHHHHHHcCCEEEEE------CCCHHHHHHHHHHHHHh-cCCE-E
Confidence 455689999999887 21 111111 223445569997754 23345666655554333 1111 1
Q ss_pred hhhhhhhhcccCCCCChHHHHHHHHHHHHHhcC-CcEEEEECCCcHHHHHHHh----hCCCCCEEEEee
Q 036921 377 DLYFKKTVKCVGEPMTHLESIASSAVRAAIKVK-ASVIICFTSSGRAARLIAK----YRPTMPVLSVVI 440 (527)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~ia~~av~~a~~~~-a~~Ivv~T~sG~tA~~is~----~RP~~PIiAv~~ 440 (527)
-..|+ + ...+.-...+.++..+++ .+.||+..-+|.+..-+++ ++|...|+++-+
T Consensus 145 ~~~~~--------~-~~~~G~~t~~~Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep 204 (322)
T PRK06110 145 VPSFH--------P-DLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVS 204 (322)
T ss_pred cCCCC--------C-hHHhccchHHHHHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEee
Confidence 11111 1 112222334556666654 5899999999998777654 689999999843
No 500
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=28.74 E-value=1.6e+02 Score=31.06 Aligned_cols=50 Identities=20% Similarity=0.245 Sum_probs=34.0
Q ss_pred CCeEEEEecCCCCCCHHHHHHHHHcCCCeEEeecCCCCHHHHHHHHHHHH
Q 036921 28 AMTKIVGTLGPKSRSVDVISGCLKAGMSVARFDFSWGNTEYHQETLENLK 77 (527)
Q Consensus 28 ~~tkIi~TiGp~~~~~~~l~~l~~~G~~v~RiN~shg~~e~~~~~i~~ir 77 (527)
+++|+.+-+=|...+.+-++...++|++++|+-+.-...+...+.++.+|
T Consensus 76 ~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak 125 (337)
T PRK08195 76 KQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLAR 125 (337)
T ss_pred CCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHH
Confidence 46888775557666788999999999999999763333333333333333
Done!