BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036922
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZTP|A Chain A, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|1ZTP|B Chain B, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|1ZTP|C Chain C, X-Ray Structure Of Gene Product From Homo Sapiens
Hs.433573
pdb|2Q4K|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
pdb|2Q4K|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
pdb|2Q4K|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Homo Sapiens Hs.433573
Length = 251
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 54 GPPKTADISWVALIGQSVSIATAQSGSESSLETAWRAESESLKSILTG 101
G P + + W+A+ GQ S SG L+ AW A S + I G
Sbjct: 69 GSPNSEPVGWIAVYGQGYS---PNSGDVQGLQAAWEALQTSGRPITPG 113
>pdb|2J4J|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4K|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4L|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|G Chain G, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|H Chain H, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|I Chain I, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|J Chain J, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|K Chain K, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|L Chain L, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
Length = 226
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 92 SESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRV 128
++ L+ IL G+ + G L+D LA +I +R K+RV
Sbjct: 163 TQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRV 199
>pdb|3L8N|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2
(Brefeldina-Inhibited Gep 2) From Homo Sapiens (Human).
Northeast Structural Genomics Consortium Target Id
Hr5562a
pdb|3SWV|A Chain A, Crystal Structure Of A Domain Of Brefeldin A-Inhibited
Guanine Nucleotide-Exchange Protein 2 (Brefeldin
A-Inhibited Gep 2) From Homo Sapiens (Human), Northeast
Structural Genomics Consortium Target Id Hr5562a
Length = 202
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 4 EELPPCESSITSRVLSFLQGTRTVGVISKID 34
++L CE S + +FL+G R G KID
Sbjct: 79 DQLDFCEKEFVSALRTFLEGFRLPGEAQKID 109
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 26.2 bits (56), Expect = 6.3, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 77 QSGSESSLETAWRAESESLKSILTGAPQSKL 107
Q SE+++E +RA+S+ L S P+S +
Sbjct: 60 QFKSEAAIEVLYRADSKQLPSFALAQPESAI 90
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 25.4 bits (54), Expect = 9.8, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 70 SVSIATAQSGSESSLETAWR 89
+V++ AQSG E ET WR
Sbjct: 102 AVTVLDAQSGVEPQTETVWR 121
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 25.4 bits (54), Expect = 9.8, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 70 SVSIATAQSGSESSLETAWR 89
+V++ AQSG E ET WR
Sbjct: 102 AVTVLDAQSGVEPQTETVWR 121
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 25.4 bits (54), Expect = 9.9, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 70 SVSIATAQSGSESSLETAWR 89
+V++ AQSG E ET WR
Sbjct: 102 AVTVLDAQSGVEPQTETVWR 121
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 25.4 bits (54), Expect = 9.9, Method: Composition-based stats.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 70 SVSIATAQSGSESSLETAWR 89
+V++ AQSG E ET WR
Sbjct: 102 AVTVLDAQSGVEPQTETVWR 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,720,841
Number of Sequences: 62578
Number of extensions: 64852
Number of successful extensions: 147
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 15
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 46 (22.3 bits)