BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036922
(135 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQ55|DRP2B_ARATH Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2
Length = 920
Score = 182 bits (463), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 93/114 (81%), Positives = 104/114 (91%), Gaps = 1/114 (0%)
Query: 22 QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSG-S 80
+ TRTVG+ISKIDQA+ + K+LAAVQALL NQGPPKT DI WVALIGQSVSIA+AQSG S
Sbjct: 195 ESTRTVGIISKIDQAAENPKSLAAVQALLSNQGPPKTTDIPWVALIGQSVSIASAQSGGS 254
Query: 81 ESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
E+SLETAWRAESESLKSILTGAPQSKLGRIALVD LA QIR RMK+R+PN+L+G
Sbjct: 255 ENSLETAWRAESESLKSILTGAPQSKLGRIALVDTLASQIRSRMKLRLPNILTG 308
>sp|Q9SE83|DRP2A_ARATH Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2
Length = 914
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/114 (80%), Positives = 103/114 (90%), Gaps = 1/114 (0%)
Query: 22 QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS- 80
+ TRT+G+I KIDQA+ + KALAAVQALL NQGPPKT DI WVA+IGQSVSIA+AQSGS
Sbjct: 195 ESTRTIGIIGKIDQAAENSKALAAVQALLSNQGPPKTTDIPWVAVIGQSVSIASAQSGSG 254
Query: 81 ESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLSG 134
E+SLETAWRAESESLKSILTGAPQSKLGRIALVD LA QIR RMK+R+P+VLSG
Sbjct: 255 ENSLETAWRAESESLKSILTGAPQSKLGRIALVDTLASQIRSRMKLRLPSVLSG 308
>sp|Q9FNX5|DRP1E_ARATH Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1
SV=1
Length = 624
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 23 GTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSES 82
G RT GV++K+D AL ++ P WV ++ +S A
Sbjct: 209 GERTFGVLTKLDLMDKGTNALEVLEGRSYRLQHP------WVGIVNRS----QADINKNV 258
Query: 83 SLETAWRAESESLK-SILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS 133
+ A R E E S G SK+G L L++ + ++ R+P++LS
Sbjct: 259 DMMLARRKEREYFDTSPDYGHLASKMGSEYLAKLLSKHLESVIRTRIPSILS 310
>sp|A3PE00|COBQ_PROM0 Cobyric acid synthase OS=Prochlorococcus marinus (strain MIT 9301)
GN=cobQ PE=3 SV=1
Length = 509
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 56 PKTADISWVALIGQSVSIATAQSGSESSLETAWRAESESLKSILTGAPQSKL 107
P+ IS V +G+S+ TA++ + W +SLKSI G P +L
Sbjct: 90 PQGNSISEVIHLGKSIGTTTAKNYYKDWFTPGWEVIKKSLKSIYEGNPNCRL 141
>sp|Q8S3C9|DRP1D_ARATH Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2
SV=2
Length = 612
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 23 GTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSES 82
G RT GV++K+D AL + G WV ++ +S A
Sbjct: 204 GDRTFGVLTKLDLMDKGTNALDVI------NGRSYKLKYPWVGIVNRS----QADINKNV 253
Query: 83 SLETAWRAESESLK-SILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS 133
+ A R E E + S G +++G L L++ + ++ R+P++LS
Sbjct: 254 DMMVARRKEREYFETSPDYGHLATRMGSEYLAKLLSKLLESVIRSRIPSILS 305
>sp|B2FPM4|HIS6_STRMK Imidazole glycerol phosphate synthase subunit HisF
OS=Stenotrophomonas maltophilia (strain K279a) GN=hisF
PE=3 SV=1
Length = 258
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Query: 1 MREEELPPCESSITSRVLSFLQGTRTV--GVISKIDQASADQKALAAVQALLLNQGPPKT 58
M + PC RV+ ++ V G I+++ Q DQ A V + ++
Sbjct: 1 MLSRRIIPCLDVRDGRVVKGVRFRDHVDMGDIAELAQRYRDQGADELVFYDIGASPEARS 60
Query: 59 ADISWVALIGQSVSIATAQSGSESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQ 118
D++W+ I + + I +G S+ETA R + +P LGR L+ LA
Sbjct: 61 VDVAWIERIARLIDIPFCVAGGIDSVETARRVLFAGADKVSINSP--ALGRPELITELAD 118
Query: 119 QI 120
+
Sbjct: 119 EF 120
>sp|B4STP2|HIS6_STRM5 Imidazole glycerol phosphate synthase subunit HisF
OS=Stenotrophomonas maltophilia (strain R551-3) GN=hisF
PE=3 SV=1
Length = 258
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Query: 1 MREEELPPCESSITSRVLSFLQGTRTV--GVISKIDQASADQKALAAVQALLLNQGPPKT 58
M + PC RV+ ++ V G I+++ Q DQ A V + ++
Sbjct: 1 MLSRRIIPCLDVRDGRVVKGVRFRDHVDMGDIAELAQRYRDQGADELVFYDIGASPEARS 60
Query: 59 ADISWVALIGQSVSIATAQSGSESSLETAWRAESESLKSILTGAPQSKLGRIALVDALAQ 118
D++W+ I + + I +G S+ETA R + +P LGR L+ LA
Sbjct: 61 VDVAWIERIARLIDIPFCVAGGIDSVETARRVLFAGADKVSINSP--ALGRPELITELAD 118
Query: 119 QI 120
+
Sbjct: 119 EF 120
>sp|Q3IDM6|RLMD_PSEHT 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=rlmD PE=3 SV=1
Length = 441
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 29 VISKIDQASADQKALAAVQALLLNQGPPKT-ADISWVALIGQSVSIATAQSGSESSLETA 87
V + D KAL +V L L QG + I I + + AQS +E +
Sbjct: 179 VFTVFDNLINQHKALHSVSHLQLCQGDEQNFVIIRHTKPISEDIKALVAQSAAEQQWQLV 238
Query: 88 WRAESESLKSILTGAPQSKLGRIAL 112
W++ESE ++ P L + L
Sbjct: 239 WQSESEVIEHSHLAMPFYALEELGL 263
>sp|Q043G6|ADDA_LACGA ATP-dependent helicase/nuclease subunit A OS=Lactobacillus gasseri
(strain ATCC 33323 / DSM 20243) GN=addA PE=3 SV=1
Length = 1204
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 95 LKSILTGAPQSKLGRIALVDALAQQIRKRMKVRVPNVL 132
LK IL+G P S L I A A+++++R+K ++ + L
Sbjct: 38 LKKILSGTPVSSLLIITFTKAAAREMKERIKQKISDQL 75
>sp|Q9H3H3|CK068_HUMAN UPF0696 protein C11orf68 OS=Homo sapiens GN=C11orf68 PE=1 SV=2
Length = 251
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 52 NQGPPKTADISWVALIGQSVSIATAQSGSESSLETAWRAESESLKSILTG 101
+ G P + + W+A+ GQ S SG L+ AW A S + I G
Sbjct: 67 DPGSPNSEPVGWIAVYGQGYS---PNSGDVQGLQAAWEALQTSGRPITPG 113
>sp|O94898|LRIG2_HUMAN Leucine-rich repeats and immunoglobulin-like domains protein 2
OS=Homo sapiens GN=LRIG2 PE=2 SV=3
Length = 1065
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 64 VALIGQSVSIA-TAQSGSESSLETAWRAESESLKSILT 100
+AL G +V++ TA S S+S + T WR +SE L + T
Sbjct: 508 IALRGMNVTLTCTAVSSSDSPMSTVWRKDSEILYDVDT 545
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.125 0.335
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,070,769
Number of Sequences: 539616
Number of extensions: 1170451
Number of successful extensions: 3875
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3783
Number of HSP's gapped (non-prelim): 98
length of query: 135
length of database: 191,569,459
effective HSP length: 100
effective length of query: 35
effective length of database: 137,607,859
effective search space: 4816275065
effective search space used: 4816275065
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)