Query 036922
Match_columns 135
No_of_seqs 69 out of 71
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 11:00:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3szr_A Interferon-induced GTP- 99.7 1.2E-19 4E-24 156.7 0.4 120 6-133 192-319 (608)
2 3t34_A Dynamin-related protein 99.7 4E-17 1.4E-21 129.5 7.1 117 7-133 182-304 (360)
3 2x2e_A Dynamin-1; nitration, h 99.3 2.5E-12 8.4E-17 102.3 6.0 118 6-133 175-298 (353)
4 3zvr_A Dynamin-1; hydrolase, D 99.1 1.9E-10 6.6E-15 104.6 7.0 117 6-132 195-317 (772)
5 2aka_B Dynamin-1; fusion prote 98.9 5E-09 1.7E-13 78.4 7.7 117 7-133 171-293 (299)
6 1jwy_B Dynamin A GTPase domain 98.7 2.5E-08 8.4E-13 75.7 7.1 115 9-133 179-299 (315)
7 1upt_B Golgi autoantigen, golg 63.7 2.3 7.7E-05 28.5 0.9 28 90-118 5-32 (60)
8 2juz_A UPF0352 protein HI0840; 35.8 28 0.00096 24.4 2.9 23 107-129 52-74 (80)
9 2a9k_A RAS-related protein RAL 34.2 40 0.0014 22.0 3.3 18 23-40 123-140 (187)
10 3ssc_A ECOKMCRBC, 5-methylcyto 33.9 9.9 0.00034 29.8 0.3 19 54-72 40-58 (170)
11 1u8z_A RAS-related protein RAL 30.6 41 0.0014 21.4 2.9 17 23-39 109-125 (168)
12 4esy_A CBS domain containing m 29.6 25 0.00086 23.9 1.8 16 22-37 143-158 (170)
13 3pqc_A Probable GTP-binding pr 26.6 35 0.0012 22.6 2.0 18 22-39 132-149 (195)
14 1z0f_A RAB14, member RAS oncog 26.4 62 0.0021 20.9 3.2 30 22-51 119-148 (179)
15 3gby_A Uncharacterized protein 25.8 37 0.0013 21.6 2.0 16 22-37 107-122 (128)
16 1kao_A RAP2A; GTP-binding prot 25.3 59 0.002 20.6 2.9 17 22-38 107-123 (167)
17 4dhe_A Probable GTP-binding pr 24.8 32 0.0011 23.7 1.6 19 22-40 143-161 (223)
18 2ygv_E Serine/threonine-protei 23.7 15 0.0005 21.2 -0.2 11 32-42 8-18 (26)
19 2bov_A RAla, RAS-related prote 23.6 56 0.0019 21.9 2.6 28 23-50 119-146 (206)
20 3iev_A GTP-binding protein ERA 22.1 2.7E+02 0.0091 21.3 7.5 28 22-49 121-148 (308)
21 2fn4_A P23, RAS-related protei 21.5 94 0.0032 20.1 3.4 17 22-38 113-129 (181)
22 1z08_A RAS-related protein RAB 21.4 95 0.0032 19.9 3.3 29 22-50 110-138 (170)
23 2oil_A CATX-8, RAS-related pro 21.0 98 0.0034 20.7 3.5 18 22-39 129-146 (193)
24 2fg5_A RAB-22B, RAS-related pr 21.0 99 0.0034 20.9 3.5 29 23-51 128-156 (192)
25 1svi_A GTP-binding protein YSX 20.6 53 0.0018 21.9 2.0 19 22-40 133-151 (195)
26 3bc1_A RAS-related protein RAB 20.6 72 0.0025 20.8 2.7 16 23-38 127-142 (195)
27 2gf9_A RAS-related protein RAB 20.5 73 0.0025 21.3 2.7 16 23-38 127-142 (189)
28 1z2a_A RAS-related protein RAB 20.2 87 0.003 19.9 3.0 16 23-38 109-124 (168)
29 2rc3_A CBS domain; in SITU pro 20.1 45 0.0015 21.3 1.5 16 22-37 112-127 (135)
No 1
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.74 E-value=1.2e-19 Score=156.71 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=102.3
Q ss_pred CCCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCC
Q 036922 6 LPPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS 80 (135)
Q Consensus 6 ~Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adins 80 (135)
.|++.|++++++++++ .|.||||||||.|+++.++.. ..++. |. |+.+.+.++|++|+|||+ .|++.
T Consensus 192 vt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~-~~~~~-l~--~~~~~l~~g~~~v~nr~~----~~~~~ 263 (608)
T 3szr_A 192 VPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTED-KVVDV-VR--NLVFHLKKGYMIVKCRGQ----QEIQD 263 (608)
T ss_dssp EESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTT-CCCCC-C----CCSCCSSCEECCCCSCT----TCTTT
T ss_pred EeccchhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHH-HHHHH-Hh--CcccccCceEEEEecCch----hhccc
Confidence 4789999999999999 799999999999999998752 13343 54 899999999999999999 89999
Q ss_pred CCcHHHHHHHHHHHHhhhh-cCCcc--cchhHHHHHHHHHHHHHHHHHhhcccccc
Q 036922 81 ESSLETAWRAESESLKSIL-TGAPQ--SKLGRIALVDALAQQIRKRMKVRVPNVLS 133 (135)
Q Consensus 81 e~~m~tArr~E~E~f~s~~-~g~~~--sklG~~~L~~~Lsk~i~~~ik~RlP~ils 133 (135)
..++++|+++|.+||.+.+ |.++. +++|..+|.+.|++.|.+.|+..||.|.+
T Consensus 264 ~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~ 319 (608)
T 3szr_A 264 QLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLEN 319 (608)
T ss_dssp CCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999 66543 58999999999999999999999999864
No 2
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.68 E-value=4e-17 Score=129.49 Aligned_cols=117 Identities=26% Similarity=0.404 Sum_probs=104.9
Q ss_pred CCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCCC
Q 036922 7 PPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSE 81 (135)
Q Consensus 7 Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adinse 81 (135)
|++.+..+++.++++ .|.|||+|+||+|+++.++. +++. +. +..+...+||+.++++|+ .+++..
T Consensus 182 ~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~---~~~~-~~--~~~~~~~~~~~~v~~~s~----~~i~~~ 251 (360)
T 3t34_A 182 PANQDLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTD---AVEI-LE--GRSFKLKYPWVGVVNRSQ----ADINKN 251 (360)
T ss_dssp ETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC---SHHH-HT--TSSSCCSSCCEEECCCCH----HHHHTT
T ss_pred cccCCcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCccc---HHHH-Hc--CccccccCCeEEEEECCh----HHhccC
Confidence 567888888888887 68899999999999998887 4444 43 778889999999999999 888889
Q ss_pred CcHHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhcccccc
Q 036922 82 SSLETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS 133 (135)
Q Consensus 82 ~~m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~ils 133 (135)
.++..++..|.+||.+.+ |.++.+++|..+|.+.|++.|...|+..||.|.+
T Consensus 252 ~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~ 304 (360)
T 3t34_A 252 VDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQS 304 (360)
T ss_dssp CCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHH
T ss_pred CCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999998 8888899999999999999999999999999864
No 3
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.30 E-value=2.5e-12 Score=102.30 Aligned_cols=118 Identities=21% Similarity=0.281 Sum_probs=96.6
Q ss_pred CCCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCC
Q 036922 6 LPPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS 80 (135)
Q Consensus 6 ~Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adins 80 (135)
+|++.++..++.++++ .|.|+|+|+||+|+++.+++ +.+. +. +..+.+.++|+.+++.|. .+...
T Consensus 175 ~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~---~~~~-~~--~~~~~l~~~~~~v~~~SA----~~~~~ 244 (353)
T 2x2e_A 175 SPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTD---ARDV-LE--NKLLPLRRGYIGVVNRSQ----KDIDG 244 (353)
T ss_dssp EETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCC---CHHH-HT--TCSSCCTTCEEECCCCCH----HHHHT
T ss_pred ecCCCccchhHHHHHHHHhCcCCCceEEEeccccccCcchh---HHHH-Hh--CCcccccCCceEEEeCCc----ccccc
Confidence 4678888888887676 68999999999999988876 3333 54 566667789999999987 45444
Q ss_pred CCcHHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhcccccc
Q 036922 81 ESSLETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS 133 (135)
Q Consensus 81 e~~m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~ils 133 (135)
-.++..+..+|.+||.+.+ |-....++|+..|.+.|.++|...|+..||.|..
T Consensus 245 i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~ 298 (353)
T 2x2e_A 245 KKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRN 298 (353)
T ss_dssp TCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888999998887 7677789999999999999999999999998643
No 4
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.06 E-value=1.9e-10 Score=104.56 Aligned_cols=117 Identities=21% Similarity=0.283 Sum_probs=98.9
Q ss_pred CCCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCC
Q 036922 6 LPPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGS 80 (135)
Q Consensus 6 ~Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adins 80 (135)
++++.++...+.++++ .|.++|+|+||+|++++++. +.+. +. +..+.+..+|+.+|+.|. .+...
T Consensus 195 VDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~---~~~i-l~--~~~~~l~lg~~~VV~iSA----~~G~G 264 (772)
T 3zvr_A 195 SPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTD---ARDV-LE--NKLLPLRRGYIGVVNRSQ----KDIDG 264 (772)
T ss_dssp EETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCC---SHHH-HT--TCSSCCSSCEEECCCCCC----EESSS
T ss_pred EcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchh---hHHH-HH--HHhhhhhccCCceEEecc----ccccc
Confidence 3567777888877666 68999999999999998887 3333 43 556677889999999987 66656
Q ss_pred CCcHHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhccccc
Q 036922 81 ESSLETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPNVL 132 (135)
Q Consensus 81 e~~m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~il 132 (135)
-.++..+..+|.+||.+.| |.....+.|+..|++.|.++|...|+..||.|.
T Consensus 265 vdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~ 317 (772)
T 3zvr_A 265 KKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 317 (772)
T ss_dssp SEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHH
Confidence 6789999999999999888 888889999999999999999999999999854
No 5
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.88 E-value=5e-09 Score=78.44 Aligned_cols=117 Identities=21% Similarity=0.292 Sum_probs=86.8
Q ss_pred CCCCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCCC
Q 036922 7 PPCESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSE 81 (135)
Q Consensus 7 Pan~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adinse 81 (135)
+++.++...+.++++ .|.++|.|+||+|+.+.+.. ..+. +. +.-+...++|+.++..|. .+-..-
T Consensus 171 d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~---~~~~-~~--~~~~~~~~~~~~v~~~SA----~~~~gi 240 (299)
T 2aka_B 171 PANSDLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTD---ARDV-LE--NKLLPLRRGYIGVVNRSQ----KDIDGK 240 (299)
T ss_dssp ESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCC---CHHH-HT--TCSSCCTTCEEECCCCCC----BCTTSC
T ss_pred cCCcchhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCch---HHHH-Hh--CCcCcCCCCcEEEECCCh----hhcccc
Confidence 455566666655555 58899999999999987765 2233 44 444455678999988776 333233
Q ss_pred CcHHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhcccccc
Q 036922 82 SSLETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS 133 (135)
Q Consensus 82 ~~m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~ils 133 (135)
.++..+-..|.++|.... +-....++|+..|.+.|.+++...++..||.+..
T Consensus 241 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~ 293 (299)
T 2aka_B 241 KDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRN 293 (299)
T ss_dssp BCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 467777778999997666 5566678999999999999999999999998753
No 6
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.73 E-value=2.5e-08 Score=75.70 Aligned_cols=115 Identities=19% Similarity=0.287 Sum_probs=88.4
Q ss_pred CCCcccccccccc-----cCceeeeeeehhhccccchhHHHHHHHHHHhCCCCCCCCCceEEEeccceehhhcccCCCCc
Q 036922 9 CESSITSRVLSFL-----QGTRTVGVISKIDQASADQKALAAVQALLLNQGPPKTADISWVALIGQSVSIATAQSGSESS 83 (135)
Q Consensus 9 n~diatS~alkla-----~g~RTiGVitKiD~~~~~t~alaAv~alL~~qG~~~~~~~pWVavInrSq~ia~Adinse~~ 83 (135)
+.++...+.++++ .+.++|.|+||+|+.+.+.+. .+. +. ..-+....+|+.++..|. .+......
T Consensus 179 ~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~---~~~-~~--~~~~~~~~~~~~v~~~sa----~~~~~~~g 248 (315)
T 1jwy_B 179 NTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDA---MEV-LT--GRVIPLTLGFIGVINRSQ----EDIIAKKS 248 (315)
T ss_dssp SSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCC---HHH-HT--TSSSCCTTCEEECCCCCH----HHHSSSCC
T ss_pred CcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHH---HHH-Hh--CCCccCCCCeEEEecCCh----hhhccCCC
Confidence 4445444444444 588999999999999877653 333 43 333344589999988887 55555678
Q ss_pred HHHHHHHHHHHHhhhh-cCCcccchhHHHHHHHHHHHHHHHHHhhcccccc
Q 036922 84 LETAWRAESESLKSIL-TGAPQSKLGRIALVDALAQQIRKRMKVRVPNVLS 133 (135)
Q Consensus 84 m~tArr~E~E~f~s~~-~g~~~sklG~~~L~~~Lsk~i~~~ik~RlP~ils 133 (135)
+...+..+.++|...+ |.....++|...|++.|.+.+...++..+|.+..
T Consensus 249 v~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~ 299 (315)
T 1jwy_B 249 IRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKV 299 (315)
T ss_dssp HHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999998877 7677789999999999999999999999998753
No 7
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=63.67 E-value=2.3 Score=28.52 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=19.3
Q ss_pred HHHHHHhhhhcCCcccchhHHHHHHHHHH
Q 036922 90 AESESLKSILTGAPQSKLGRIALVDALAQ 118 (135)
Q Consensus 90 ~E~E~f~s~~~g~~~sklG~~~L~~~Lsk 118 (135)
+|.|||++++|.....+ ++..+++.++.
T Consensus 5 an~EYLrNVl~~ym~g~-~~~~m~kaI~a 32 (60)
T 1upt_B 5 TEFEYLRKVLFEYMMGR-ETKTMAKVITT 32 (60)
T ss_dssp HHHHHHHHHHHHHHTTS-SHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcc-cHHHHHHHHHH
Confidence 68999999996444333 55567777654
No 8
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=35.76 E-value=28 Score=24.44 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc
Q 036922 107 LGRIALVDALAQQIRKRMKVRVP 129 (135)
Q Consensus 107 lG~~~L~~~Lsk~i~~~ik~RlP 129 (135)
--|.++++.+++-|.+.+|.|+-
T Consensus 52 ~qR~~iAe~Fa~AL~~Svk~~~~ 74 (80)
T 2juz_A 52 TQCEALAQAFSNSLINAVKTRLE 74 (80)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999974
No 9
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=34.22 E-value=40 Score=22.03 Aligned_cols=18 Identities=22% Similarity=0.030 Sum_probs=14.1
Q ss_pred Cceeeeeeehhhccccch
Q 036922 23 GTRTVGVISKIDQASADQ 40 (135)
Q Consensus 23 g~RTiGVitKiD~~~~~t 40 (135)
+...|-|+||+|+.+...
T Consensus 123 ~~piilv~nK~Dl~~~~~ 140 (187)
T 2a9k_A 123 NVPFLLVGNKSDLEDKRQ 140 (187)
T ss_dssp TCCEEEEEECGGGGGGCC
T ss_pred CCCEEEEEECccccccCc
Confidence 677889999999876543
No 10
>3ssc_A ECOKMCRBC, 5-methylcytosine-specific restriction enzyme B; protein-DNA complex; HET: DNA 5CM; 2.10A {Escherichia coli} PDB: 3ssd_A* 3sse_A*
Probab=33.90 E-value=9.9 Score=29.83 Aligned_cols=19 Identities=26% Similarity=0.613 Sum_probs=15.4
Q ss_pred CCCCCCCCceEEEecccee
Q 036922 54 GPPKTADISWVALIGQSVS 72 (135)
Q Consensus 54 G~~~~~~~pWVavInrSq~ 72 (135)
|.-.-+++||||+.++.++
T Consensus 40 GqGn~A~IPWia~~~~~~t 58 (170)
T 3ssc_A 40 GYGNFTSIPWFAFLGEGQE 58 (170)
T ss_dssp ESSSEEEEEEEEEECTTCC
T ss_pred cCCccccCcEEEEEcCCcc
Confidence 5566789999999998753
No 11
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=30.62 E-value=41 Score=21.35 Aligned_cols=17 Identities=18% Similarity=-0.021 Sum_probs=13.5
Q ss_pred Cceeeeeeehhhccccc
Q 036922 23 GTRTVGVISKIDQASAD 39 (135)
Q Consensus 23 g~RTiGVitKiD~~~~~ 39 (135)
+...|=|+||+|+.+..
T Consensus 109 ~~piilv~nK~Dl~~~~ 125 (168)
T 1u8z_A 109 NVPFLLVGNKSDLEDKR 125 (168)
T ss_dssp TSCEEEEEECGGGGGGC
T ss_pred CCcEEEEEECccccccC
Confidence 67788999999987643
No 12
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=29.61 E-value=25 Score=23.86 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.4
Q ss_pred cCceeeeeeehhhccc
Q 036922 22 QGTRTVGVISKIDQAS 37 (135)
Q Consensus 22 ~g~RTiGVitKiD~~~ 37 (135)
++.+.+||||+-|+..
T Consensus 143 d~g~lvGivt~~Dil~ 158 (170)
T 4esy_A 143 QDGVPVGIVTRRDLLK 158 (170)
T ss_dssp ETTEEEEEEEHHHHTT
T ss_pred ECCEEEEEEEHHHHHH
Confidence 5668999999999864
No 13
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=26.63 E-value=35 Score=22.56 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.8
Q ss_pred cCceeeeeeehhhccccc
Q 036922 22 QGTRTVGVISKIDQASAD 39 (135)
Q Consensus 22 ~g~RTiGVitKiD~~~~~ 39 (135)
.+...|-|+||+|+.+..
T Consensus 132 ~~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 132 LNIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp TTCCEEEEEECGGGSCGG
T ss_pred cCCCEEEEEEChhcCChH
Confidence 477899999999997544
No 14
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=26.37 E-value=62 Score=20.91 Aligned_cols=30 Identities=10% Similarity=0.042 Sum_probs=18.1
Q ss_pred cCceeeeeeehhhccccchhHHHHHHHHHH
Q 036922 22 QGTRTVGVISKIDQASADQKALAAVQALLL 51 (135)
Q Consensus 22 ~g~RTiGVitKiD~~~~~t~alaAv~alL~ 51 (135)
.+...|=|+||+|+.+...-...-++.+..
T Consensus 119 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~ 148 (179)
T 1z0f_A 119 PNTVIILIGNKADLEAQRDVTYEEAKQFAE 148 (179)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 456788999999997644332333334343
No 15
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=25.77 E-value=37 Score=21.62 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=12.9
Q ss_pred cCceeeeeeehhhccc
Q 036922 22 QGTRTVGVISKIDQAS 37 (135)
Q Consensus 22 ~g~RTiGVitKiD~~~ 37 (135)
++.+.+|+||+-|+..
T Consensus 107 ~~g~~~Giit~~dll~ 122 (128)
T 3gby_A 107 EDGRYEGVVSRKRILG 122 (128)
T ss_dssp TTCBEEEEEEHHHHHH
T ss_pred CCCCEEEEEEHHHHHH
Confidence 4678999999988764
No 16
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=25.30 E-value=59 Score=20.56 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=12.7
Q ss_pred cCceeeeeeehhhcccc
Q 036922 22 QGTRTVGVISKIDQASA 38 (135)
Q Consensus 22 ~g~RTiGVitKiD~~~~ 38 (135)
.+...|=|+||+|+.+.
T Consensus 107 ~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 107 EKVPVILVGNKVDLESE 123 (167)
T ss_dssp SCCCEEEEEECGGGGGG
T ss_pred CCCCEEEEEECCccccc
Confidence 36678888888888654
No 17
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=24.77 E-value=32 Score=23.74 Aligned_cols=19 Identities=16% Similarity=0.358 Sum_probs=15.4
Q ss_pred cCceeeeeeehhhccccch
Q 036922 22 QGTRTVGVISKIDQASADQ 40 (135)
Q Consensus 22 ~g~RTiGVitKiD~~~~~t 40 (135)
.+...|-|+||+|+.....
T Consensus 143 ~~~p~i~v~nK~Dl~~~~~ 161 (223)
T 4dhe_A 143 TGKPIHSLLTKCDKLTRQE 161 (223)
T ss_dssp GCCCEEEEEECGGGSCHHH
T ss_pred cCCCEEEEEeccccCChhh
Confidence 4678999999999986543
No 18
>2ygv_E Serine/threonine-protein kinase RAD53; chaperone-transferase complex, checkpoint, DNA damage, chrom; 2.94A {Saccharomyces cerevisiae}
Probab=23.66 E-value=15 Score=21.18 Aligned_cols=11 Identities=36% Similarity=0.504 Sum_probs=9.5
Q ss_pred hhhccccchhH
Q 036922 32 KIDQASADQKA 42 (135)
Q Consensus 32 KiD~~~~~t~a 42 (135)
|+||++++++.
T Consensus 8 kLdqa~k~~~~ 18 (26)
T 2ygv_E 8 KLDQTSKGPEN 18 (26)
T ss_pred hccccccCCcc
Confidence 89999998883
No 19
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=23.58 E-value=56 Score=21.93 Aligned_cols=28 Identities=14% Similarity=0.010 Sum_probs=18.4
Q ss_pred CceeeeeeehhhccccchhHHHHHHHHH
Q 036922 23 GTRTVGVISKIDQASADQKALAAVQALL 50 (135)
Q Consensus 23 g~RTiGVitKiD~~~~~t~alaAv~alL 50 (135)
+...|-|+||+|+.+...-...-++.+.
T Consensus 119 ~~piilv~nK~Dl~~~~~~~~~~~~~~~ 146 (206)
T 2bov_A 119 NVPFLLVGNKSDLEDKRQVSVEEAKNRA 146 (206)
T ss_dssp CCCEEEEEECTTCGGGCCSCHHHHHHHH
T ss_pred CCCEEEEEeccCccccccccHHHHHHHH
Confidence 6788999999999775433333334434
No 20
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=22.07 E-value=2.7e+02 Score=21.26 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=19.6
Q ss_pred cCceeeeeeehhhccccchhHHHHHHHH
Q 036922 22 QGTRTVGVISKIDQASADQKALAAVQAL 49 (135)
Q Consensus 22 ~g~RTiGVitKiD~~~~~t~alaAv~al 49 (135)
.+...|-|+||+|+..........++.+
T Consensus 121 ~~~pvilV~NK~Dl~~~~~~~~~~~~~l 148 (308)
T 3iev_A 121 LNKPVIVVINKIDKIGPAKNVLPLIDEI 148 (308)
T ss_dssp GCCCEEEEEECGGGSSSGGGGHHHHHHH
T ss_pred cCCCEEEEEECccCCCCHHHHHHHHHHH
Confidence 4678899999999984444445555553
No 21
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=21.52 E-value=94 Score=20.05 Aligned_cols=17 Identities=29% Similarity=0.085 Sum_probs=12.8
Q ss_pred cCceeeeeeehhhcccc
Q 036922 22 QGTRTVGVISKIDQASA 38 (135)
Q Consensus 22 ~g~RTiGVitKiD~~~~ 38 (135)
.+...|=|+||+|+.+.
T Consensus 113 ~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 113 DDFPVVLVGNKADLESQ 129 (181)
T ss_dssp SCCCEEEEEECGGGGGG
T ss_pred CCCCEEEEEECcccccc
Confidence 35677888899998764
No 22
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=21.36 E-value=95 Score=19.89 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=17.3
Q ss_pred cCceeeeeeehhhccccchhHHHHHHHHH
Q 036922 22 QGTRTVGVISKIDQASADQKALAAVQALL 50 (135)
Q Consensus 22 ~g~RTiGVitKiD~~~~~t~alaAv~alL 50 (135)
.+...|=|+||+|+.+...-...-++.+.
T Consensus 110 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 138 (170)
T 1z08_A 110 NEICLCIVGNKIDLEKERHVSIQEAESYA 138 (170)
T ss_dssp GGSEEEEEEECGGGGGGCCSCHHHHHHHH
T ss_pred CCCeEEEEEECcccccccccCHHHHHHHH
Confidence 35567889999998765333333334433
No 23
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=21.02 E-value=98 Score=20.68 Aligned_cols=18 Identities=22% Similarity=0.021 Sum_probs=13.5
Q ss_pred cCceeeeeeehhhccccc
Q 036922 22 QGTRTVGVISKIDQASAD 39 (135)
Q Consensus 22 ~g~RTiGVitKiD~~~~~ 39 (135)
.+...|=|+||+|+....
T Consensus 129 ~~~piilv~nK~Dl~~~~ 146 (193)
T 2oil_A 129 ATIVVMLVGNKSDLSQAR 146 (193)
T ss_dssp TTCEEEEEEECGGGGGGC
T ss_pred CCCeEEEEEECCCccccc
Confidence 356688899999987643
No 24
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=20.95 E-value=99 Score=20.87 Aligned_cols=29 Identities=10% Similarity=-0.041 Sum_probs=18.3
Q ss_pred CceeeeeeehhhccccchhHHHHHHHHHH
Q 036922 23 GTRTVGVISKIDQASADQKALAAVQALLL 51 (135)
Q Consensus 23 g~RTiGVitKiD~~~~~t~alaAv~alL~ 51 (135)
+...|=|+||+|+.+...-...-++.+..
T Consensus 128 ~~piiiv~NK~Dl~~~~~v~~~~~~~~~~ 156 (192)
T 2fg5_A 128 NIVMAIAGNKCDLSDIREVPLKDAKEYAE 156 (192)
T ss_dssp TCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred CCcEEEEEECcccccccccCHHHHHHHHH
Confidence 67788899999997643333334444343
No 25
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=20.58 E-value=53 Score=21.89 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=15.6
Q ss_pred cCceeeeeeehhhccccch
Q 036922 22 QGTRTVGVISKIDQASADQ 40 (135)
Q Consensus 22 ~g~RTiGVitKiD~~~~~t 40 (135)
.+...|-|+||+|+.+...
T Consensus 133 ~~~p~i~v~nK~Dl~~~~~ 151 (195)
T 1svi_A 133 YGIPVIVIATKADKIPKGK 151 (195)
T ss_dssp TTCCEEEEEECGGGSCGGG
T ss_pred cCCCEEEEEECcccCChHH
Confidence 5778999999999987543
No 26
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=20.56 E-value=72 Score=20.81 Aligned_cols=16 Identities=19% Similarity=-0.002 Sum_probs=12.4
Q ss_pred Cceeeeeeehhhcccc
Q 036922 23 GTRTVGVISKIDQASA 38 (135)
Q Consensus 23 g~RTiGVitKiD~~~~ 38 (135)
+...|=|+||+|+.+.
T Consensus 127 ~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 127 NPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp SCCEEEEEECTTCGGG
T ss_pred CCCEEEEEECcccccc
Confidence 5677888899998654
No 27
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=20.52 E-value=73 Score=21.33 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=11.8
Q ss_pred Cceeeeeeehhhcccc
Q 036922 23 GTRTVGVISKIDQASA 38 (135)
Q Consensus 23 g~RTiGVitKiD~~~~ 38 (135)
+...|=|+||+|+.+.
T Consensus 127 ~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 127 NAQVILVGNKCDLEDE 142 (189)
T ss_dssp TCEEEEEEECTTCGGG
T ss_pred CCCEEEEEECcccccc
Confidence 5667888888888654
No 28
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=20.19 E-value=87 Score=19.94 Aligned_cols=16 Identities=31% Similarity=0.179 Sum_probs=12.5
Q ss_pred Cceeeeeeehhhcccc
Q 036922 23 GTRTVGVISKIDQASA 38 (135)
Q Consensus 23 g~RTiGVitKiD~~~~ 38 (135)
+...|=|+||+|+.+.
T Consensus 109 ~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 109 DIPTALVQNKIDLLDD 124 (168)
T ss_dssp SCCEEEEEECGGGGGG
T ss_pred CCCEEEEEECcccCcc
Confidence 6677888899998764
No 29
>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1
Probab=20.09 E-value=45 Score=21.26 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=12.1
Q ss_pred cCceeeeeeehhhccc
Q 036922 22 QGTRTVGVISKIDQAS 37 (135)
Q Consensus 22 ~g~RTiGVitKiD~~~ 37 (135)
+..+.+||||+-|+..
T Consensus 112 d~g~~~Giit~~dll~ 127 (135)
T 2rc3_A 112 DDGKVIGLLSIGDLVK 127 (135)
T ss_dssp ETTEEEEEEEHHHHHH
T ss_pred eCCEEEEEEEHHHHHH
Confidence 4458899999888754
Done!