BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036924
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 138/288 (47%), Positives = 185/288 (64%), Gaps = 2/288 (0%)
Query: 10 NFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGI 69
F AA L+ L+S L + L P R + VE + DDG + F G+R+QH+ ARGP KGGI
Sbjct: 13 QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 72
Query: 70 RYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIH 129
RYHP+V DEV ALA MTWKTAV N+P+GG KGG+ +P LS +ELERL+R F +I
Sbjct: 73 RYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQ 132
Query: 130 DLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGRDAATGRG 188
+IG + D+PAPD+ T +AW +D YS GH+ +VTGKP++LGGS GR+ ATGRG
Sbjct: 133 VIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRG 192
Query: 189 VLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDISGAIKNSKG 247
V ++ G + +QGFGNVG +AA LI ++ G K+VAVSD G I N +G
Sbjct: 193 VKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG 252
Query: 248 IDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295
DV L+++ KEH V + G+ I + +L D D+L+PAAL G I+
Sbjct: 253 FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIH 300
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 256 bits (654), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/288 (47%), Positives = 185/288 (64%), Gaps = 2/288 (0%)
Query: 10 NFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGI 69
F AA L+ L+S L + L P R + VE + DDG + F G+R+QH+ ARGP KGGI
Sbjct: 12 QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 71
Query: 70 RYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIH 129
RYHP+V DEV ALA MTWKTAV ++P+GG KGG+ +P LS +ELERL+R F +I
Sbjct: 72 RYHPDVTLDEVKALAFWMTWKTAVMDLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQ 131
Query: 130 DLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGRDAATGRG 188
+IG + D+PAPD+ T +AW +D YS GH+ +VTGKP++LGGS GR+ ATGRG
Sbjct: 132 VIIGPYNDIPAPDVNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRG 191
Query: 189 VLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDISGAIKNSKG 247
V ++ G + +QGFGNVG +AA LI ++ G K+VAVSD G I N +G
Sbjct: 192 VKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG 251
Query: 248 IDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295
DV L+++ KEH V + G+ I + +L D D+L+PAAL G I+
Sbjct: 252 FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIH 299
>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|B Chain B, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|C Chain C, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|D Chain D, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|E Chain E, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|F Chain F, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
Length = 424
Score = 244 bits (623), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 183/296 (61%), Gaps = 2/296 (0%)
Query: 1 MNALVATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDN 60
+N ++T K A R LG + + + P R + V + D+G++ F G+R QH++
Sbjct: 15 LNLFLSTQTIIKEALRKLGYPGDMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHND 74
Query: 61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERL 120
A GP KGG+R+HPEV+ ++V AL+ MT K +AN+PYGG KGGI C+P +S ELERL
Sbjct: 75 AVGPTKGGVRFHPEVNEEKVKALSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERL 134
Query: 121 TRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGH-SPAVVTGKPIDLGGSL 179
+R + + I ++G D+PAPD+ T Q MAW++DEYS+ SP +TGKP+ LGGS
Sbjct: 135 SRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQ 194
Query: 180 GRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239
GR+ AT +GV +E + + G + R +IQGFGN GS+ A+ + + G K++ +SD +
Sbjct: 195 GRETATAQGVTICIEEAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDAN 254
Query: 240 GAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295
G + N G+D+P LL ++ G+ D I + +L +DCD+L+PAA+ I
Sbjct: 255 GGLYNPDGLDIPYLLDK-RDSFGMVTNLFTDVITNEELLEKDCDILVPAAISNQIT 309
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 124/291 (42%), Positives = 177/291 (60%), Gaps = 4/291 (1%)
Query: 9 RNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGG 68
+ + AA+ + + + + L P R ++V I DDG++ F GFR+QH+ ARGP KGG
Sbjct: 12 KQLERAAQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRVQHNWARGPTKGG 71
Query: 69 IRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKI 128
IR+HP V ALA MTWK AV ++PYGG KGGI NP +LS E ERL R + + +
Sbjct: 72 IRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSEREQERLARAYIRAV 131
Query: 129 HDLIGIHADVPAPDMGTGPQTMAWILDEYS---KFHGHSPAVVTGKPIDLGGSLGRDAAT 185
+D+IG D+PAPD+ T P+ M W++DEY + G + V+TGKP+ +GGSLGR AT
Sbjct: 132 YDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPLSIGGSLGRGTAT 191
Query: 186 GRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDISGAIKN 244
+G +F + G ++ G++ +QG+GN G + A+L E+ G +VAVSD G I N
Sbjct: 192 AQGAIFTIREAAKALGIDLKGKKIAVQGYGNAGYYTAKLAKEQLGMTVVAVSDSRGGIYN 251
Query: 245 SKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295
G+D +LK +EH VK F G +I + +L + DVL PAA+ VI
Sbjct: 252 PDGLDPDEVLKWKREHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVIT 302
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 138/288 (47%), Positives = 185/288 (64%), Gaps = 2/288 (0%)
Query: 10 NFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGI 69
F AA L+ L+S L + L P R + VE + DDG + F G+R+QH+ ARGP KGGI
Sbjct: 12 QFNRAASLMDLESDLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGI 71
Query: 70 RYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIH 129
RYHP+V DEV ALA MTWKTAV N+P+GG KGG+ +P LS ELERL+R F ++I
Sbjct: 72 RYHPDVTLDEVKALAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLSRRFFREIQ 131
Query: 130 DLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSP-AVVTGKPIDLGGSLGRDAATGRG 188
+IG + D+PAPD+ T +AW +DEY GH+ +VTGKP++LGGS GR+ ATGRG
Sbjct: 132 VIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRG 191
Query: 189 VLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDISGAIKNSKG 247
V ++ G + +QGFGNVG +AA LI ++ G K+VAVSD G I N +G
Sbjct: 192 VKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEG 251
Query: 248 IDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295
DV L+++ KEH V + G+ I + +L D D+L+PAAL G I+
Sbjct: 252 FDVEELIRYKKEHGTVVTYPKGERITNEELLELDVDILVPAALEGAIH 299
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
Length = 419
Score = 234 bits (597), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 126/292 (43%), Positives = 177/292 (60%), Gaps = 5/292 (1%)
Query: 9 RNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGG 68
+ + AA+ + + + + L P R ++V + DDG++ F GFR+QH+ ARGP KGG
Sbjct: 11 KQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGG 70
Query: 69 IRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKI 128
IR+HPE V ALA MTWKTAV ++PYGG KGGI +P LS E ERL R + + I
Sbjct: 71 IRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAI 130
Query: 129 HDLIGIHADVPAPDMGTGPQTMAWILDEYSKF-HGHSPA--VVTGKPIDLGGSLGRDAAT 185
+D+I + D+PAPD+ T PQ MAW++DEY +PA ++TGKP+ +GGSLGR AT
Sbjct: 131 YDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEAT 190
Query: 186 GRGVLFAMEALLNEHGKN-IAGQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDISGAIK 243
RG + + G + + G+ IQG+GN G + A+++ E G K+VAVSD G I
Sbjct: 191 ARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIY 250
Query: 244 NSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295
N G++ +LK EH VK F G +I + +L + DVL PAA+ VI
Sbjct: 251 NPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELEVDVLAPAAIEEVIT 302
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|B Chain B, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|C Chain C, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|D Chain D, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|E Chain E, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|F Chain F, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|G Chain G, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|H Chain H, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|I Chain I, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|J Chain J, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|K Chain K, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|L Chain L, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
Length = 440
Score = 234 bits (596), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 133/274 (48%), Positives = 172/274 (62%), Gaps = 1/274 (0%)
Query: 18 LGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDP 77
LG + L +SL P R + V+ + DDG++A F G+R+ H+ ARGP KGG+RYHPEV
Sbjct: 46 LGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTL 105
Query: 78 DEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHAD 137
EV ALA MT K A +PYGG KGGI +P LS ELERLTR +T +I L+G D
Sbjct: 106 SEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRD 165
Query: 138 VPAPDMGTGPQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGRDAATGRGVLFAMEAL 196
+PAPD+ TG + MAW++D YS G + P VVTGKPI LGGSLGR ATGRGV A
Sbjct: 166 IPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAA 225
Query: 197 LNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKH 256
+ G + G R IQGFGNVG+ AAR + G ++VAV D +G + N GID LL+H
Sbjct: 226 AEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRH 285
Query: 257 VKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAAL 290
V+E GV+G+ + + + + L+PAAL
Sbjct: 286 VQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAAL 319
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|B Chain B, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 424
Score = 234 bits (596), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 133/274 (48%), Positives = 172/274 (62%), Gaps = 1/274 (0%)
Query: 18 LGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDP 77
LG + L +SL P R + V+ + DDG++A F G+R+ H+ ARGP KGG+RYHPEV
Sbjct: 30 LGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVRYHPEVTL 89
Query: 78 DEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHAD 137
EV ALA MT K A +PYGG KGGI +P LS ELERLTR +T +I L+G D
Sbjct: 90 SEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGILLGPDRD 149
Query: 138 VPAPDMGTGPQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGRDAATGRGVLFAMEAL 196
+PAPD+ TG + MAW++D YS G + P VVTGKPI LGGSLGR ATGRGV A
Sbjct: 150 IPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITAAAA 209
Query: 197 LNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKH 256
+ G + G R IQGFGNVG+ AAR + G ++VAV D +G + N GID LL+H
Sbjct: 210 AEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRH 269
Query: 257 VKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAAL 290
V+E GV+G+ + + + + L+PAAL
Sbjct: 270 VQEFGGVRGYPKAEPLPAADFWGLPVEFLVPAAL 303
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 232 bits (592), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 176/291 (60%), Gaps = 4/291 (1%)
Query: 9 RNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGG 68
+ + AA+ + + + + L P R ++V + DDG++ F GFR+Q++ ARGP KGG
Sbjct: 11 KQLERAAQYMDISEEALEFLKRPQRIVEVSIPVEMDDGSVKVFTGFRVQYNWARGPTKGG 70
Query: 69 IRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKI 128
IR+HPE V ALA MTWKTAV ++PYGG KGG+ CNP ++S E ERL R + + I
Sbjct: 71 IRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVICNPKEMSDREKERLARGYVRAI 130
Query: 129 HDLIGIHADVPAPDMGTGPQTMAWILDEY---SKFHGHSPAVVTGKPIDLGGSLGRDAAT 185
+D+I + D+PAPD+ T PQ MAW++DEY S+ S V+TGKP +GG + R AT
Sbjct: 131 YDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRRKDPSFGVITGKPPSVGGIVARMDAT 190
Query: 186 GRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGG-KIVAVSDISGAIKN 244
RG + + G ++ G+ IQG+GN G + A+++ E+ G K+VAVSD G I N
Sbjct: 191 ARGASYTVREAAKALGMDLKGKTIAIQGYGNAGYYMAKIMSEEYGMKVVAVSDTKGGIYN 250
Query: 245 SKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295
G++ +L K+ VK F G +I + +L + DVL P+A+ VI
Sbjct: 251 PDGLNADEVLAWKKKTGSVKDFPGATNITNEELLELEVDVLAPSAIEEVIT 301
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 227 bits (579), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 179/291 (61%), Gaps = 3/291 (1%)
Query: 1 MNALVATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDN 60
++ L +T A LG ++ + L P R + V+ + DDG++ F G+R H++
Sbjct: 15 LDVLKSTQTVIHKALEKLGYPEEVYELLKEPMRLLTVKIPVRMDDGSVKIFTGYR-AHND 73
Query: 61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERL 120
+ GP KGGIR+HP V EV AL+ M+ K + ++PYGG KGGI C+P D+S ELERL
Sbjct: 74 SVGPTKGGIRFHPNVTEKEVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFRELERL 133
Query: 121 TRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSL 179
+R + + I ++G DVPAPD+ T Q MAW++DEYS+ +SP +TGKP+ LGGS
Sbjct: 134 SRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLVLGGSH 193
Query: 180 GRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239
GR++AT +GV ++ + G +I G R V+QGFGN GS+ A+ + + G K+V +SD
Sbjct: 194 GRESATAKGVTICIKEAAKKRGIDIKGARVVVQGFGNAGSYLAKFMHDAGAKVVGISDAY 253
Query: 240 GAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAAL 290
G + + +G+D+ LL ++ G D+I + +L DCD+L+PAA+
Sbjct: 254 GGLYDPEGLDIDYLLDR-RDSFGTVTKLFNDTITNQELLELDCDILVPAAI 303
>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
pdb|2YFQ|B Chain B, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
Length = 421
Score = 205 bits (522), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/302 (37%), Positives = 173/302 (57%), Gaps = 7/302 (2%)
Query: 1 MNALVATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDN 60
+N LVA ++A LG D + + L P R I++ + DDGT+ F G+R H +
Sbjct: 5 LNPLVAAQEKVRIACEKLGCDPAVYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSS 64
Query: 61 ARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERL 120
A GP KGG+R+HP V+ DEV AL+ MT+K +PYGG KGGI +P +LS ELE+L
Sbjct: 65 AVGPSKGGVRFHPNVNMDEVKALSLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQL 124
Query: 121 TRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAV--VTGKPIDLGGS 178
+R + + ++ +G D+PAPD+ T Q M+W +DEY K +G + TGKP+ GGS
Sbjct: 125 SRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGS 184
Query: 179 LGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238
GR+ ATG GV + G + + +QGFGNVG++ + I +GGK+ A+++
Sbjct: 185 EGRNEATGFGVAVVVRESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEW 244
Query: 239 -----SGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGV 293
+ A+ N GID LL + + ++ + GF G + I ++ D+++PAAL V
Sbjct: 245 DRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDEEFWTKEYDIIVPAALENV 304
Query: 294 IN 295
I
Sbjct: 305 IT 306
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/263 (45%), Positives = 155/263 (58%), Gaps = 15/263 (5%)
Query: 41 IPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGG 100
I +DDG+ G+R QH + R P KGGIRY +V DEV ALA LMT+K AV ++P+GG
Sbjct: 60 IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 101 AKGGIGCNPVDLSISELERLTRVFTQKIHD--LIGIHADVPAPDMGTGPQTMAWILDEYS 158
AK G+ NP + + +ELE++TR FT ++ IG DVPAPDM TG + M+WI D Y+
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 159 KFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGK-NIAG------- 206
GH + A VTGKPI GG GR +ATGRGV +E +NE +I G
Sbjct: 180 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 239
Query: 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGF 266
+ FV+QGFGNVG + R + G K +AV + G+I N GID L +H + GF
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGF 299
Query: 267 SGGDSIDSNSILIEDCDVLIPAA 289
+ SIL DCD+LIPAA
Sbjct: 300 PKAKPYEG-SILEADCDILIPAA 321
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 204 bits (518), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 119/263 (45%), Positives = 154/263 (58%), Gaps = 15/263 (5%)
Query: 41 IPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGG 100
I +DDG+ G+R QH R P KGGIRY +V DEV ALA LMT+K AV ++P+GG
Sbjct: 60 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 119
Query: 101 AKGGIGCNPVDLSISELERLTRVFTQKIHD--LIGIHADVPAPDMGTGPQTMAWILDEYS 158
AK G+ NP + + +ELE++TR FT ++ IG DVPAPDM TG + M+WI D Y+
Sbjct: 120 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 179
Query: 159 KFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGK-NIAG------- 206
GH + A VTGKPI GG GR +ATGRGV +E +NE +I G
Sbjct: 180 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 239
Query: 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGF 266
+ FV+QGFGNVG + R + G K +AV + G+I N GID L +H + GF
Sbjct: 240 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGF 299
Query: 267 SGGDSIDSNSILIEDCDVLIPAA 289
+ SIL DCD+LIPAA
Sbjct: 300 PKAKPYEG-SILEADCDILIPAA 321
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 204 bits (518), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 119/263 (45%), Positives = 154/263 (58%), Gaps = 15/263 (5%)
Query: 41 IPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGG 100
I +DDG+ G+R QH R P KGGIRY +V DEV ALA LMT+K AV ++P+GG
Sbjct: 69 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 128
Query: 101 AKGGIGCNPVDLSISELERLTRVFTQKIHD--LIGIHADVPAPDMGTGPQTMAWILDEYS 158
AK G+ NP + + +ELE++TR FT ++ IG DVPAPDM TG + M+WI D Y+
Sbjct: 129 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYA 188
Query: 159 KFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGK-NIAG------- 206
GH + A VTGKPI GG GR +ATGRGV +E +NE +I G
Sbjct: 189 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 248
Query: 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGF 266
+ FV+QGFGNVG + R + G K +AV + G+I N GID L +H + GF
Sbjct: 249 KTFVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKELEDFKLQHGSILGF 308
Query: 267 SGGDSIDSNSILIEDCDVLIPAA 289
+ SIL DCD+LIPAA
Sbjct: 309 PKAKPYEG-SILEADCDILIPAA 330
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 203 bits (516), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 120/263 (45%), Positives = 153/263 (58%), Gaps = 15/263 (5%)
Query: 41 IPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGG 100
I +DDG+ G+R QH R P KGGIRY +V DEV ALA LMT+K AV ++P+GG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 101 AKGGIGCNPVDLSISELERLTRVFTQKIHD--LIGIHADVPAPDMGTGPQTMAWILDEYS 158
AK G+ NP + + +ELE++TR FT ++ IG DVPAPDM TG + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYA 184
Query: 159 KFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGK-NIAG------- 206
GH + A VTGKPI GG GR +ATGRGV +E +NE +I G
Sbjct: 185 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 244
Query: 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGF 266
+ F +QGFGNVG + R + G K VAV + G+I N GID L +H + GF
Sbjct: 245 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGF 304
Query: 267 SGGDSIDSNSILIEDCDVLIPAA 289
I SIL DCD+LIPAA
Sbjct: 305 PKA-KIYEGSILEVDCDILIPAA 326
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 202 bits (515), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/263 (45%), Positives = 153/263 (58%), Gaps = 15/263 (5%)
Query: 41 IPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGG 100
I +DDG+ G+R QH R P KGGIRY +V DEV ALA LMT+K AV ++P+GG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 101 AKGGIGCNPVDLSISELERLTRVFTQKIHD--LIGIHADVPAPDMGTGPQTMAWILDEYS 158
AK G+ NP + + +ELE++TR FT ++ IG DVPAPDM TG + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYA 184
Query: 159 KFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGK-NIAG------- 206
GH + A VTGKPI GG GR +ATGRGV +E +NE +I G
Sbjct: 185 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGD 244
Query: 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGF 266
+ FV+QGFGNVG + R + G K + V + G+I N GID L +H + GF
Sbjct: 245 KTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGF 304
Query: 267 SGGDSIDSNSILIEDCDVLIPAA 289
I SIL DCD+LIPAA
Sbjct: 305 PKA-KIYEGSILEVDCDILIPAA 326
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 197 bits (502), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 116/294 (39%), Positives = 167/294 (56%), Gaps = 15/294 (5%)
Query: 12 KLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRY 71
K L G K L P R + V + D G F G+R+QH + GP KGG+R+
Sbjct: 15 KKGVELGGFPEDFYKILSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRF 74
Query: 72 HPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDL 131
HPEV + ALA LMT K ++A +PYGGAKG + +P LS ELE L+R + + I L
Sbjct: 75 HPEVTLADDVALAILMTLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAPL 134
Query: 132 IGIHADVPAPDMGTGPQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGRDAATGRGVL 190
IG D+PAPD+GT Q MAW++DEYSK G++ P V T KP +L G+ R+ ATG GV
Sbjct: 135 IGDVVDIPAPDVGTNAQIMAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVA 194
Query: 191 FAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDV 250
A + + I G+ IQG GNVG W A + + G K++AVSDI+G +G++V
Sbjct: 195 VATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNV 254
Query: 251 PSLLKHVKEHRGVKG------FSGGDSID----SNSILIEDCDVLIPAALGGVI 294
+ +++++G+ G F+ D+ + ++I D D+ +PAA+ VI
Sbjct: 255 ----ELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAIENVI 304
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 197 bits (500), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 117/263 (44%), Positives = 152/263 (57%), Gaps = 15/263 (5%)
Query: 41 IPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGG 100
I +DDG+ G+R QH + R P KGGIRY +V DEV ALA LMT+K AV ++P+GG
Sbjct: 65 IRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGG 124
Query: 101 AKGGIGCNPVDLSISELERLTRVFTQKIHD--LIGIHADVPAPDMGTGPQTMAWILDEYS 158
AK G+ NP + + +LE++TR FT ++ IG DVPAP+M TG + M+WI D Y+
Sbjct: 125 AKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYA 184
Query: 159 KFHGH----SPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALL-NEHGKNIAG------- 206
GH + A VTGKPI GG GR +ATGRGV +E + N +I G
Sbjct: 185 STIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIENASYMSILGMTPGFGD 244
Query: 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGF 266
+ F +QGFGNVG + R + G K VAV + G+I N GID L +H + GF
Sbjct: 245 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGF 304
Query: 267 SGGDSIDSNSILIEDCDVLIPAA 289
I SIL DCD+LIPAA
Sbjct: 305 PKA-KIYEGSILEVDCDILIPAA 326
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 180 bits (456), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 140/245 (57%), Gaps = 1/245 (0%)
Query: 11 FKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIR 70
+ A ++ G+ + L P R + + + DDG + F G+R+ HD ARGP KGG+R
Sbjct: 22 LERALKVAGVHPTTLEYLAHPKRLVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKGGVR 81
Query: 71 YHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHD 130
P V + LA MT K AV ++P+GGA GGI +P LS ELERL R +T ++
Sbjct: 82 LDPGVTLGQTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAELVG 141
Query: 131 LIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHS-PAVVTGKPIDLGGSLGRDAATGRGV 189
LIG +D+ PD+G Q MAWI+D YS G + P VVTGKP LGGS GRD A G G
Sbjct: 142 LIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGA 201
Query: 190 LFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGID 249
L +EAL G ++ G R V+QG G VG+ A G ++VAV+ G + +G+D
Sbjct: 202 LLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLD 261
Query: 250 VPSLL 254
V +L
Sbjct: 262 VAEVL 266
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|B Chain B, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|C Chain C, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|D Chain D, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|E Chain E, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|F Chain F, Structure Of A Chimeric Glutamate Dehydrogenase
Length = 448
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 122/236 (51%), Gaps = 1/236 (0%)
Query: 24 LEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
L + ++IP R I+ D+G + G+R+Q + A GP KGG+R+ P V+ + L
Sbjct: 48 LLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 107
Query: 84 AQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAPDM 143
+K ++ +P GGAKGG +P S E+ R + F +++ IG DVPA D+
Sbjct: 108 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 167
Query: 144 GTGPQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGK 202
G G + + ++ +Y K G V+TGK GGSL R ATG G+++ EA+L HG
Sbjct: 168 GVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLIRPEATGYGLVYFTEAMLKRHGM 227
Query: 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVK 258
G R + G GNV +A E G +++ SD SG + + G L + ++
Sbjct: 228 GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIE 283
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 125/239 (52%), Gaps = 1/239 (0%)
Query: 24 LEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
L + ++IP R I+ D+G + G+R+Q + A GP KGG+R+ P V+ + L
Sbjct: 47 LLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFL 106
Query: 84 AQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAPDM 143
+K ++ +P GGAKGG +P S E+ R + F +++ IG DVPA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 144 GTGPQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGK 202
G G + + ++ +Y K G V+TGK GGSL R ATG G ++ +EA++
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND 226
Query: 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHR 261
+ G+ + GFGNV AA+ + E G K V +S G I + +GI + ++ E R
Sbjct: 227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMR 285
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 130 bits (327), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 124/239 (51%), Gaps = 1/239 (0%)
Query: 24 LEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
L + ++IP R I+ D+G + G+R+Q + A GP GG+R+ P V+ + L
Sbjct: 47 LLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFL 106
Query: 84 AQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAPDM 143
+K ++ +P GGAKGG +P S E+ R + F +++ IG DVPA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 144 GTGPQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGK 202
G G + + ++ +Y K G V+TGK GGSL R ATG G ++ +EA++
Sbjct: 167 GVGARELGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND 226
Query: 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHR 261
+ G+ + GFGNV AA+ + E G K V +S G I + +GI + ++ E R
Sbjct: 227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMR 285
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 124/239 (51%), Gaps = 1/239 (0%)
Query: 24 LEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNAL 83
L + ++IP R I+ D+G + G+R+Q + A GP GG+R+ P V+ + L
Sbjct: 47 LLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFL 106
Query: 84 AQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAPDM 143
+K ++ +P GGAKGG +P S E+ R + F +++ IG DVPA D+
Sbjct: 107 GFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDL 166
Query: 144 GTGPQTMAWILDEYSKF-HGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGK 202
G G + + ++ +Y K G V+TGK GGSL R ATG G ++ +EA++
Sbjct: 167 GVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHEND 226
Query: 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHR 261
+ G+ + GFGNV AA+ + E G K V +S G I + +GI + ++ E R
Sbjct: 227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMR 285
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 1/237 (0%)
Query: 22 SKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81
S LE+ L+ P R I+ D + +R+Q +A GP KGG+R+HP V+ +
Sbjct: 49 SLLER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 107
Query: 82 ALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAP 141
L T+K A+ +P GG KGG +P S E+ R + +++ +G DVPA
Sbjct: 108 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 167
Query: 142 DMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHG 201
D+G G + + ++ K ++ V TGK + GGSL R ATG G+++ EA+L HG
Sbjct: 168 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHG 227
Query: 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVK 258
G R + G GNV +A E G +++ SD SG + + G L + ++
Sbjct: 228 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIE 284
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 1/237 (0%)
Query: 22 SKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81
S LE+ L+ P R I+ D + +R+Q +A GP KGG+R+HP V+ +
Sbjct: 52 SLLER-LVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 110
Query: 82 ALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAP 141
L T+K A+ +P GG KGG +P S E+ R + +++ +G DVPA
Sbjct: 111 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 170
Query: 142 DMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHG 201
D+G G + + ++ K ++ V TGK + GGSL R ATG G+++ EA+L HG
Sbjct: 171 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHG 230
Query: 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVK 258
G R + G GNV +A E G +++ SD SG + + G L + ++
Sbjct: 231 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIE 287
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 1/237 (0%)
Query: 22 SKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81
S LE+ L+ P R I+ D + +R+Q +A GP KGG+R+HP V+ +
Sbjct: 49 SLLER-LVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNLSILK 107
Query: 82 ALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAP 141
L T+K A+ +P GG KGG +P S E+ R + +++ +G DVPA
Sbjct: 108 FLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAG 167
Query: 142 DMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHG 201
D+G G + + ++ K ++ V TGK + GGSL R ATG G+++ EA+L HG
Sbjct: 168 DIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHG 227
Query: 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVK 258
G R + G GNV +A E G +++ SD SG + + G L + ++
Sbjct: 228 MGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGLVVDESGFTKEKLARLIE 284
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 127 bits (319), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 20/279 (7%)
Query: 31 PFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWK 90
P R I+ D G GFR+Q+++ GP KGG+R+HP V+ + L +K
Sbjct: 64 PERVIQFRVPWINDKGEHKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFLGFEQIFK 123
Query: 91 TAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTM 150
++ +P GG KGG +P S +E+ + + F + IG + DVPA D+G G + +
Sbjct: 124 NSLTTLPMGGGKGGSDFDPKGKSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREI 183
Query: 151 AWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAGQRFV 210
++ +Y K V+TGK I GGS R ATG GV++ E +L + N+ ++ +
Sbjct: 184 GYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLNDNLENKKCL 243
Query: 211 IQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKG---------IDVPS-----LLKH 256
+ G GNV + + EKG ++ +SD +G I G +D+ + L ++
Sbjct: 244 VSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEY 303
Query: 257 VKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295
+K + K F + CD+ P A IN
Sbjct: 304 LKYSKTAKYFENQKPWNI------PCDIAFPCATQNEIN 336
>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|B Chain B, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|C Chain C, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|D Chain D, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|E Chain E, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|F Chain F, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
Length = 470
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 118/238 (49%), Gaps = 2/238 (0%)
Query: 26 KSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQ 85
++L P R I+ D+G FR+Q+++A GP KGG+R+HP V+ V L
Sbjct: 72 ETLSEPERAIQFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGF 131
Query: 86 LMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGT 145
+K ++ + GG KGG +P S +E+ + + F +++ IG DVPA D+G
Sbjct: 132 EQIFKNSLTGLSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGV 191
Query: 146 GPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIA 205
G + + ++ +Y K +TGK + GGS R ATG G+++ + +L +
Sbjct: 192 GGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVE 251
Query: 206 GQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSL--LKHVKEHR 261
Q V+ G GNV + + + K++ +SD +G + G +L L +KE +
Sbjct: 252 KQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEK 309
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 104/244 (42%), Gaps = 37/244 (15%)
Query: 58 HDNARGPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLS 113
HD GP GG R Y E + ++ LA+ MT+K A A + GG K I NP
Sbjct: 32 HDTTLGPALGGTRMWTYASEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGNP---K 88
Query: 114 ISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPI 173
+ + + R F + I L G + + A D+GT M I E VTG
Sbjct: 89 TDKNDEMFRAFGRYIEGLNGRY--ITAEDVGTTEADMDLINLETD--------YVTGTSA 138
Query: 174 DLGGSLGRDAATGRGVLFAMEALLNEH--GKNIAGQRFVIQGFGNVGSWAARLIGEKGGK 231
G S T G+ + M+A E ++AG+ +QG GNV + E+G K
Sbjct: 139 GAGSSGNPSPVTAYGIYYGMKAAAKEAFGDDSLAGKTVAVQGVGNVAYALCEYLHEEGAK 198
Query: 232 IVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALG 291
++ ++DI N + + R V F G ++ N I ++ D+ P ALG
Sbjct: 199 LI-ITDI-----NEEAV-----------QRAVDAF-GATAVGINEIYSQEADIFAPCALG 240
Query: 292 GVIN 295
+IN
Sbjct: 241 AIIN 244
>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 114/267 (42%), Gaps = 41/267 (15%)
Query: 38 ECTIPK-DDGTLASFVGFRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKT 91
E T+ + D T A FV I+ D+ + GP GG R Y D + LA MT K
Sbjct: 12 EMTVTRFDSKTGAHFV---IRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKM 68
Query: 92 AVANIPYGGAKGGIGCNPVDLSI--SELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQT 149
AV+N+P GG K I SI S R+ R+ + I L G + PD+ T
Sbjct: 69 AVSNLPMGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSAD 126
Query: 150 MAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHG-KNIAGQR 208
M L++ ++F V G+ ++ GG+ T GV AM+A + G ++ G
Sbjct: 127 MD-TLNDTTEF-------VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLT 178
Query: 209 FVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSG 268
++QG G VG A L E G +++ + + ++ + G
Sbjct: 179 VLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------G 219
Query: 269 GDSIDSNSILIEDCDVLIPAALGGVIN 295
++ +L CDV P A+GGVI
Sbjct: 220 HTAVALEDVLSTPCDVFAPCAMGGVIT 246
>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 106/250 (42%), Gaps = 37/250 (14%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVANIPYGGAKGGIGCN 108
F I+ D+ + GP GG R Y D + LA MT K AV+N+P GG K I
Sbjct: 25 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 84
Query: 109 PVDLSI--SELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPA 166
SI S R+ R+ + I L G + PD+ T M L++ ++F
Sbjct: 85 APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 135
Query: 167 VVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHG-KNIAGQRFVIQGFGNVGSWAARLI 225
V G+ ++ GG+ T GV AM+A + G ++ G ++QG G VG A L
Sbjct: 136 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 194
Query: 226 GEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVL 285
E G +++ + + ++ + G ++ +L CDV
Sbjct: 195 AEAGAQLLVADTDTERVAHAVAL-------------------GHTAVALEDVLSTPCDVF 235
Query: 286 IPAALGGVIN 295
P A+GGVI
Sbjct: 236 APCAMGGVIT 245
>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 106/250 (42%), Gaps = 37/250 (14%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVANIPYGGAKGGIGCN 108
F I+ D+ + GP GG R Y D + LA MT K AV+N+P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 109 PVDLSI--SELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPA 166
SI S R+ R+ + I L G + PD+ T M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHG-KNIAGQRFVIQGFGNVGSWAARLI 225
V G+ ++ GG+ T GV AM+A + G ++ G ++QG G VG A L
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 226 GEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVL 285
E G +++ + + ++ + G ++ +L CDV
Sbjct: 196 AEAGAQLLVADTDTERVAHAVAL-------------------GHTAVALEDVLSTPCDVF 236
Query: 286 IPAALGGVIN 295
P A+GGVI
Sbjct: 237 APCAMGGVIT 246
>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 106/250 (42%), Gaps = 37/250 (14%)
Query: 54 FRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVANIPYGGAKGGIGCN 108
F I+ D+ + GP GG R Y D + LA MT K AV+N+P GG K I
Sbjct: 26 FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNLPMGGGKSVIALP 85
Query: 109 PVDLSI--SELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPA 166
SI S R+ R+ + I L G + PD+ T M L++ ++F
Sbjct: 86 APRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADMD-TLNDTTEF------ 136
Query: 167 VVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHG-KNIAGQRFVIQGFGNVGSWAARLI 225
V G+ ++ GG+ T GV AM+A + G ++ G ++QG G VG A L
Sbjct: 137 -VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLA 195
Query: 226 GEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVL 285
E G +++ + + ++ + G ++ +L CDV
Sbjct: 196 AEAGAQLLVADTDTERVAHAVAL-------------------GHTAVALEDVLSTPCDVF 236
Query: 286 IPAALGGVIN 295
P A+GGVI
Sbjct: 237 APCAMGGVIT 246
>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 112/266 (42%), Gaps = 39/266 (14%)
Query: 38 ECTIPKDDGTLASFVGFRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTA 92
E T+ + D + F I+ D+ + GP GG R Y D + LA MT K A
Sbjct: 11 EMTVTRFDSMTGAH--FVIRLDSTQLGPAAGGTRAAQYSQLADALTDAGKLAGAMTLKMA 68
Query: 93 VANIPYGGAKGGIGCNPVDLSI--SELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTM 150
V+N+P GG K I SI S R+ R+ + I L G + PD+ T M
Sbjct: 69 VSNLPMGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADM 126
Query: 151 AWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHG-KNIAGQRF 209
L++ ++F V G+ ++ GG+ T GV AM+A + G ++ G
Sbjct: 127 D-TLNDTTEF-------VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTV 178
Query: 210 VIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGG 269
++QG G VG A L E G +++ + + ++ + G
Sbjct: 179 LVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GH 219
Query: 270 DSIDSNSILIEDCDVLIPAALGGVIN 295
++ +L CDV P A+GGVI
Sbjct: 220 TAVALEDVLSTPCDVFAPCAMGGVIT 245
>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 112/266 (42%), Gaps = 39/266 (14%)
Query: 38 ECTIPKDDGTLASFVGFRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTA 92
E T+ + D + F I+ D+ + GP GG R Y D + LA MT K A
Sbjct: 11 EMTVTRFDAMTGAH--FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMA 68
Query: 93 VANIPYGGAKGGIGCNPVDLSI--SELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTM 150
V+N+P GG K I SI S R+ R+ + I L G + PD+ T M
Sbjct: 69 VSNLPMGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADM 126
Query: 151 AWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHG-KNIAGQRF 209
L++ ++F V G+ ++ GG+ T GV AM+A + G ++ G
Sbjct: 127 D-TLNDTTEF-------VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTV 178
Query: 210 VIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGG 269
++QG G VG A L E G +++ + + ++ + G
Sbjct: 179 LVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GH 219
Query: 270 DSIDSNSILIEDCDVLIPAALGGVIN 295
++ +L CDV P A+GGVI
Sbjct: 220 TAVALEDVLSTPCDVFAPCAMGGVIT 245
>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 112/266 (42%), Gaps = 39/266 (14%)
Query: 38 ECTIPKDDGTLASFVGFRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTA 92
E T+ + D + F I+ D+ + GP GG R Y D + LA MT K A
Sbjct: 12 EMTVTRFDSMTGAH--FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMA 69
Query: 93 VANIPYGGAKGGIGCNPVDLSI--SELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTM 150
V+N+P GG K I SI S R+ R+ + I L G + PD+ T M
Sbjct: 70 VSNLPMGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADM 127
Query: 151 AWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHG-KNIAGQRF 209
L++ ++F V G+ ++ GG+ T GV AM+A + G ++ G
Sbjct: 128 D-TLNDTTEF-------VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTV 179
Query: 210 VIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGG 269
++QG G VG A L E G +++ + + ++ + G
Sbjct: 180 LVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GH 220
Query: 270 DSIDSNSILIEDCDVLIPAALGGVIN 295
++ +L CDV P A+GGVI
Sbjct: 221 TAVALEDVLSTPCDVFAPCAMGGVIT 246
>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 112/266 (42%), Gaps = 39/266 (14%)
Query: 38 ECTIPKDDGTLASFVGFRIQHDNAR-GPMKGGIR---YHPEVDP-DEVNALAQLMTWKTA 92
E T+ + D + F I+ D+ + GP GG R Y D + LA MT K A
Sbjct: 11 EMTVTRFDSMTGAH--FVIRLDSTQLGPAAGGTRAAQYSNLADALTDAGKLAGAMTLKMA 68
Query: 93 VANIPYGGAKGGIGCNPVDLSI--SELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTM 150
V+N+P GG K I SI S R+ R+ + I L G + PD+ T M
Sbjct: 69 VSNLPMGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSGNY--WTGPDVNTNSADM 126
Query: 151 AWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHG-KNIAGQRF 209
L++ ++F V G+ ++ GG+ T GV AM+A + G ++ G
Sbjct: 127 D-TLNDTTEF-------VFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLGSLDGLTV 178
Query: 210 VIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGG 269
++QG G VG A L E G +++ + + ++ + G
Sbjct: 179 LVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVAL-------------------GH 219
Query: 270 DSIDSNSILIEDCDVLIPAALGGVIN 295
++ +L CDV P A+GGVI
Sbjct: 220 TAVALEDVLSTPCDVFAPCAMGGVIT 245
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 101/244 (41%), Gaps = 37/244 (15%)
Query: 58 HDNARGPMKGGIR---YHPEVDP-DEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLS 113
HD GP GG R Y+ E + ++ LA+ MT+K A A + GG K I +P
Sbjct: 32 HDTTLGPALGGARMWTYNAEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGDPF--- 88
Query: 114 ISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPI 173
+ E + R + I L G + + A D+GT M I E G SPA
Sbjct: 89 ADKNEDMFRALGRFIQGLNGRY--ITAEDVGTTVDDMDLIHQETDYVTGISPA------- 139
Query: 174 DLGGSLGRDAATGRGVLFAMEALLNEH--GKNIAGQRFVIQGFGNVGSWAARLIGEKGGK 231
G S T GV M+A E ++ G +QG GNV + + +G K
Sbjct: 140 -FGSSGNPSPVTAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAK 198
Query: 232 IVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALG 291
+V V+D++ A ++ G D++ N+I CD+ P ALG
Sbjct: 199 LV-VTDVNKAAVSAA-----------------VAEEGADAVAPNAIYGVTCDIFAPCALG 240
Query: 292 GVIN 295
V+N
Sbjct: 241 AVLN 244
>pdb|1WG8|A Chain A, Crystal Structure Of A Predicted S-Adenosylmethionine-
Dependent Methyltransferase Tt1512 From Thermus
Thermophilus Hb8.
pdb|1WG8|B Chain B, Crystal Structure Of A Predicted S-Adenosylmethionine-
Dependent Methyltransferase Tt1512 From Thermus
Thermophilus Hb8
Length = 285
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Query: 218 GSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSL------LKHVKEHRGVKGFSGGDS 271
G+ AR I E+GG+++ + A+ +KG+ +P L +H+K H G D
Sbjct: 33 GAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDG 92
Query: 272 I 272
I
Sbjct: 93 I 93
>pdb|3S05|A Chain A, Meos2 Fluorescent Protein-Green Form
pdb|3S05|B Chain B, Meos2 Fluorescent Protein-Green Form
pdb|3S05|C Chain C, Meos2 Fluorescent Protein-Green Form
pdb|3S05|D Chain D, Meos2 Fluorescent Protein-Green Form
Length = 224
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 169 TGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAG------QRFVIQGFGNVGSWAA 222
TGKP + S+ + G + FA + L + Q + Q F SW
Sbjct: 30 TGKPFEGKQSMDLEVKEGGPLPFAFDILTTAFXNRVFAKYPDNIQDYFKQSFPKGYSWER 89
Query: 223 RLIGEKGGKIVAVSDIS 239
L E GG +A +DI+
Sbjct: 90 SLTFEDGGICIARNDIT 106
>pdb|1ZUX|A Chain A, Eosfp Fluorescent Protein- Green Form
pdb|1ZUX|B Chain B, Eosfp Fluorescent Protein- Green Form
pdb|1ZUX|C Chain C, Eosfp Fluorescent Protein- Green Form
pdb|1ZUX|D Chain D, Eosfp Fluorescent Protein- Green Form
Length = 224
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 169 TGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAG------QRFVIQGFGNVGSWAA 222
TGKP + S+ + G + FA + L + Q + Q F SW
Sbjct: 30 TGKPFEGKQSMDLEVKEGGPLPFAFDILTTAFXNRVFAEYPDHIQDYFKQSFPKGYSWER 89
Query: 223 RLIGEKGGKIVAVSDIS 239
L E GG +A +DI+
Sbjct: 90 SLTFEDGGICIARNDIT 106
>pdb|3TMR|A Chain A, Irisfp, Planar Chromophore
pdb|3TMR|B Chain B, Irisfp, Planar Chromophore
pdb|3TMR|C Chain C, Irisfp, Planar Chromophore
pdb|3TMR|D Chain D, Irisfp, Planar Chromophore
pdb|3TMT|A Chain A, Irisfp, Distorted Chromophore
pdb|3TMT|B Chain B, Irisfp, Distorted Chromophore
pdb|3TMT|C Chain C, Irisfp, Distorted Chromophore
pdb|3TMT|D Chain D, Irisfp, Distorted Chromophore
Length = 230
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 169 TGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAG------QRFVIQGFGNVGSWAA 222
TGKP + S+ + G + FA + L + Q + Q F SW
Sbjct: 36 TGKPFEGKQSMDLEVKEGGPLPFAFDILTTAFXNRVFAEYPDHIQDYFKQSFPKGYSWER 95
Query: 223 RLIGEKGGKIVAVSDIS 239
L E GG +A +DI+
Sbjct: 96 SLTFEDGGICIARNDIT 112
>pdb|3P8U|A Chain A, Crystal Structure Of Meosfp In Its Green State
pdb|3P8U|B Chain B, Crystal Structure Of Meosfp In Its Green State
pdb|3P8U|C Chain C, Crystal Structure Of Meosfp In Its Green State
pdb|3P8U|D Chain D, Crystal Structure Of Meosfp In Its Green State
Length = 230
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 169 TGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAG------QRFVIQGFGNVGSWAA 222
TGKP + S+ + G + FA + L + Q + Q F SW
Sbjct: 36 TGKPFEGKQSMDLEVKEGGPLPFAFDILTTAFXNRVFAEYPDHIQDYFKQSFPKGYSWER 95
Query: 223 RLIGEKGGKIVAVSDIS 239
L E GG +A +DI+
Sbjct: 96 SLTFEDGGICIARNDIT 112
>pdb|2VVH|A Chain A, Irisfp Fluorescent Protein In Its Green Form, Cis
Conformation
pdb|2VVH|B Chain B, Irisfp Fluorescent Protein In Its Green Form, Cis
Conformation
pdb|2VVH|C Chain C, Irisfp Fluorescent Protein In Its Green Form, Cis
Conformation
pdb|2VVH|D Chain D, Irisfp Fluorescent Protein In Its Green Form, Cis
Conformation
pdb|2VVI|A Chain A, Irisfp Fluorescent Protein In Its Green Form, Trans
Conformation
pdb|2VVI|B Chain B, Irisfp Fluorescent Protein In Its Green Form, Trans
Conformation
pdb|2VVI|C Chain C, Irisfp Fluorescent Protein In Its Green Form, Trans
Conformation
pdb|2VVI|D Chain D, Irisfp Fluorescent Protein In Its Green Form, Trans
Conformation
Length = 226
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 169 TGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAG------QRFVIQGFGNVGSWAA 222
TGKP + S+ + G + FA + L + Q + Q F SW
Sbjct: 32 TGKPFEGKQSMDLEVKEGGPLPFAFDILTTAFXNRVFAEYPDHIQDYFKQSFPKGYSWER 91
Query: 223 RLIGEKGGKIVAVSDIS 239
L E GG +A +DI+
Sbjct: 92 SLTFEDGGICIARNDIT 108
>pdb|2VVJ|A Chain A, Irisfp Fluorescent Protein In Its Red Form, Cis
Conformation
pdb|2VVJ|B Chain B, Irisfp Fluorescent Protein In Its Red Form, Cis
Conformation
pdb|2VVJ|C Chain C, Irisfp Fluorescent Protein In Its Red Form, Cis
Conformation
pdb|2VVJ|D Chain D, Irisfp Fluorescent Protein In Its Red Form, Cis
Conformation
Length = 226
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 169 TGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAG------QRFVIQGFGNVGSWAA 222
TGKP + S+ + G + FA + L + Q + Q F SW
Sbjct: 32 TGKPFEGKQSMDLEVKEGGPLPFAFDILTTAXXNRVFAEYPDHIQDYFKQSFPKGYSWER 91
Query: 223 RLIGEKGGKIVAVSDIS 239
L E GG +A +DI+
Sbjct: 92 SLTFEDGGICIARNDIT 108
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 208 RFVIQGFGNVGSWAARLIGEKGG---KIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVK 264
R I GFG +G R+I E+ ++VA++D++ ++K + LLK+ H K
Sbjct: 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLT----DTKTL--AHLLKYDSVH---K 52
Query: 265 GFSGGDSIDSNSILIE 280
F G NS++++
Sbjct: 53 KFPGKVEYTENSLIVD 68
>pdb|3H9E|A Chain A, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3H9E|B Chain B, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3- Phosphate Dehydrogenase (Gapds)
Complex With Nad And Phosphate
pdb|3PFW|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3PFW|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad, A Binary Form
pdb|3H9E|O Chain O, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
pdb|3H9E|P Chain P, Crystal Structure Of Human Sperm-Specific
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapds) Complex
With Nad And Phosphate
Length = 346
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 211 IQGFGNVGSWAARLIGEKGGKIVAVSD 237
I GFG +G R EKG K+VAV+D
Sbjct: 12 INGFGRIGRLVLRACMEKGVKVVAVND 38
>pdb|2VYN|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|D Chain D, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 334
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 211 IQGFGNVGSWAARLIGEKGGKIVAVSD 237
I GFG +G R+ EKG ++VAV+D
Sbjct: 6 INGFGRIGRLVLRVCMEKGVRVVAVND 32
>pdb|3TUM|A Chain A, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
pdb|3TUM|B Chain B, 2.15 Angstrom Resolution Crystal Structure Of A Shikimate
Dehydrogenase Family Protein From Pseudomonas Putida
Kt2440 In Complex With Nad+
Length = 269
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 198 NEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGA 241
++HG AG+R ++ G G VGS A + E G + + D S A
Sbjct: 117 HKHGFEPAGKRALVIGCGGVGSAIAYALAEAGIASITLCDPSTA 160
>pdb|2QEZ|A Chain A, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|B Chain B, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|C Chain C, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|D Chain D, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|E Chain E, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
pdb|2QEZ|F Chain F, Crystal Structure Of Ethanolamine Ammonia-Lyase Heavy
Chain (Yp_013784.1) From Listeria Monocytogenes 4b F2365
At 2.15 A Resolution
Length = 455
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 8/55 (14%)
Query: 72 HPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQ 126
HP DPD + LA L + YG IG NPVD S + RL F +
Sbjct: 166 HPTDDPDGI--LASLX------EGLTYGIGDAVIGLNPVDDSTDSVVRLLNKFEE 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,574,354
Number of Sequences: 62578
Number of extensions: 433627
Number of successful extensions: 1118
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 58
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)