Query 036924
Match_columns 295
No_of_seqs 220 out of 1570
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02477 glutamate dehydrogena 100.0 3E-101 7E-106 747.5 36.3 295 1-295 1-295 (410)
2 COG0334 GdhA Glutamate dehydro 100.0 1.8E-99 4E-104 725.8 32.4 294 2-295 2-296 (411)
3 PRK14030 glutamate dehydrogena 100.0 3.1E-98 7E-103 730.4 35.5 294 2-295 19-325 (445)
4 PRK09414 glutamate dehydrogena 100.0 2.4E-95 5E-100 711.8 35.0 294 2-295 23-325 (445)
5 PRK14031 glutamate dehydrogena 100.0 6.4E-92 1.4E-96 686.4 34.4 293 3-295 20-324 (444)
6 PTZ00079 NADP-specific glutama 100.0 2.6E-91 5.7E-96 681.1 35.1 292 4-295 32-334 (454)
7 KOG2250 Glutamate/leucine/phen 100.0 1.8E-82 3.9E-87 612.9 25.8 273 23-295 66-347 (514)
8 PTZ00324 glutamate dehydrogena 100.0 9.5E-59 2.1E-63 482.1 28.4 264 17-295 458-781 (1002)
9 PF02812 ELFV_dehydrog_N: Glu/ 100.0 7.2E-51 1.6E-55 339.7 12.4 130 31-160 1-130 (131)
10 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 5E-37 1.1E-41 281.8 14.9 127 169-295 1-135 (254)
11 cd01076 NAD_bind_1_Glu_DH NAD( 100.0 2.1E-31 4.6E-36 241.5 15.1 120 176-295 1-120 (227)
12 PF00208 ELFV_dehydrog: Glutam 100.0 8.8E-32 1.9E-36 246.4 9.7 120 176-295 1-128 (244)
13 cd05211 NAD_bind_Glu_Leu_Phe_V 100.0 1.8E-29 3.9E-34 227.5 13.4 111 184-295 1-111 (217)
14 cd01075 NAD_bind_Leu_Phe_Val_D 99.7 8.1E-17 1.8E-21 143.4 12.5 96 182-295 2-99 (200)
15 COG2902 NAD-specific glutamate 99.5 5.4E-13 1.2E-17 142.5 13.7 216 18-255 759-1012(1592)
16 PRK08374 homoserine dehydrogen 99.4 8E-13 1.7E-17 126.5 6.8 85 207-291 3-101 (336)
17 PF05088 Bac_GDH: Bacterial NA 99.3 1.4E-11 3E-16 135.6 15.5 216 18-252 697-945 (1528)
18 PRK06392 homoserine dehydrogen 99.3 1.7E-12 3.7E-17 123.8 7.3 83 207-291 1-91 (326)
19 PRK06270 homoserine dehydrogen 98.9 3.8E-09 8.3E-14 101.3 7.4 85 207-291 3-99 (341)
20 cd05191 NAD_bind_amino_acid_DH 98.6 5.3E-07 1.1E-11 69.5 9.2 55 184-238 1-55 (86)
21 PLN02700 homoserine dehydrogen 98.3 7.4E-07 1.6E-11 86.7 5.6 87 205-291 2-119 (377)
22 PRK06813 homoserine dehydrogen 98.3 8.1E-07 1.8E-11 85.6 5.7 83 207-292 3-97 (346)
23 COG0460 ThrA Homoserine dehydr 97.9 1.7E-05 3.7E-10 76.0 5.1 78 205-292 2-89 (333)
24 PRK09436 thrA bifunctional asp 97.8 3.3E-05 7.2E-10 82.2 7.0 87 200-291 459-557 (819)
25 PF00670 AdoHcyase_NAD: S-aden 97.8 9.4E-05 2E-09 64.1 7.5 52 187-239 3-55 (162)
26 PRK09466 metL bifunctional asp 97.7 5.1E-05 1.1E-09 80.6 6.5 57 203-259 455-521 (810)
27 PRK05476 S-adenosyl-L-homocyst 97.5 0.00045 9.9E-09 68.4 8.7 56 180-239 189-244 (425)
28 PRK13529 malate dehydrogenase; 97.4 0.0062 1.4E-07 62.1 15.6 165 112-295 218-397 (563)
29 cd00401 AdoHcyase S-adenosyl-L 97.3 0.00071 1.5E-08 66.8 8.4 52 184-239 183-234 (413)
30 TIGR02853 spore_dpaA dipicolin 97.3 0.0011 2.4E-08 62.3 9.0 54 182-239 130-183 (287)
31 cd01065 NAD_bind_Shikimate_DH 97.2 0.0034 7.4E-08 52.4 10.4 49 191-239 4-52 (155)
32 PF03447 NAD_binding_3: Homose 97.2 0.00035 7.5E-09 56.4 3.8 63 213-291 1-69 (117)
33 TIGR00936 ahcY adenosylhomocys 97.2 0.0011 2.4E-08 65.3 7.7 52 184-239 176-227 (406)
34 PLN03129 NADP-dependent malic 97.2 0.012 2.5E-07 60.4 15.0 158 113-295 244-416 (581)
35 cd05312 NAD_bind_1_malic_enz N 97.1 0.0036 7.8E-08 58.8 10.2 104 185-295 4-120 (279)
36 cd05311 NAD_bind_2_malic_enz N 97.1 0.0033 7.2E-08 57.1 9.7 103 185-294 4-110 (226)
37 PRK14192 bifunctional 5,10-met 97.1 0.0046 1E-07 58.2 10.7 53 182-239 139-192 (283)
38 PRK12861 malic enzyme; Reviewe 97.0 0.011 2.4E-07 62.6 13.2 148 118-295 119-271 (764)
39 PRK07232 bifunctional malic en 96.9 0.0078 1.7E-07 63.7 11.4 102 182-295 161-267 (752)
40 PTZ00317 NADP-dependent malic 96.9 0.029 6.3E-07 57.3 14.8 161 113-295 221-396 (559)
41 PRK08306 dipicolinate synthase 96.9 0.0031 6.6E-08 59.6 7.4 54 182-239 131-184 (296)
42 PRK15438 erythronate-4-phospha 96.8 0.0031 6.8E-08 61.7 7.3 54 184-238 94-147 (378)
43 PF03807 F420_oxidored: NADP o 96.8 0.0017 3.7E-08 50.1 4.4 68 208-291 1-71 (96)
44 PTZ00075 Adenosylhomocysteinas 96.8 0.0034 7.4E-08 63.0 7.6 53 186-239 233-286 (476)
45 cd00762 NAD_bind_malic_enz NAD 96.8 0.0059 1.3E-07 56.7 8.6 103 185-295 4-121 (254)
46 PF02826 2-Hacid_dh_C: D-isome 96.8 0.0023 5E-08 55.7 5.5 36 201-236 31-66 (178)
47 PRK00257 erythronate-4-phospha 96.8 0.0031 6.7E-08 61.8 6.9 48 190-238 100-147 (381)
48 PF10727 Rossmann-like: Rossma 96.7 0.0011 2.4E-08 55.2 2.8 34 205-238 9-42 (127)
49 PLN02494 adenosylhomocysteinas 96.6 0.0041 8.9E-08 62.4 6.5 52 184-239 235-286 (477)
50 COG0281 SfcA Malic enzyme [Ene 96.6 0.02 4.4E-07 56.4 10.9 103 183-295 176-283 (432)
51 PRK14175 bifunctional 5,10-met 96.6 0.0061 1.3E-07 57.5 6.9 53 182-239 138-191 (286)
52 PRK14189 bifunctional 5,10-met 96.5 0.014 3.1E-07 55.0 9.3 54 181-239 137-191 (285)
53 PF01488 Shikimate_DH: Shikima 96.5 0.0073 1.6E-07 50.3 6.4 77 202-292 8-86 (135)
54 PF01113 DapB_N: Dihydrodipico 96.5 0.0031 6.8E-08 51.8 4.0 73 207-290 1-76 (124)
55 PF03949 Malic_M: Malic enzyme 96.5 0.0088 1.9E-07 55.6 7.1 106 185-295 4-121 (255)
56 PRK13302 putative L-aspartate 96.4 0.0099 2.1E-07 55.4 7.1 73 204-292 4-78 (271)
57 PRK14179 bifunctional 5,10-met 96.4 0.019 4.2E-07 54.1 9.0 54 181-239 137-191 (284)
58 cd01078 NAD_bind_H4MPT_DH NADP 96.4 0.016 3.4E-07 50.8 8.0 54 184-238 6-60 (194)
59 PRK12862 malic enzyme; Reviewe 96.3 0.02 4.3E-07 60.8 9.8 101 183-295 170-275 (763)
60 cd01080 NAD_bind_m-THF_DH_Cycl 96.3 0.015 3.2E-07 50.7 7.3 55 180-239 22-77 (168)
61 cd05213 NAD_bind_Glutamyl_tRNA 96.3 0.018 4E-07 54.5 8.5 47 192-239 165-211 (311)
62 PF02882 THF_DHG_CYH_C: Tetrah 96.3 0.014 3.1E-07 50.5 6.9 55 181-240 15-70 (160)
63 COG0373 HemA Glutamyl-tRNA red 96.3 0.023 5E-07 56.2 9.2 84 188-288 160-245 (414)
64 PRK14194 bifunctional 5,10-met 96.2 0.013 2.8E-07 55.7 7.1 53 182-239 139-192 (301)
65 COG0111 SerA Phosphoglycerate 96.2 0.0099 2.1E-07 57.0 6.2 91 201-295 137-239 (324)
66 PRK06932 glycerate dehydrogena 96.2 0.014 2.9E-07 55.7 6.9 34 203-236 144-177 (314)
67 PLN03139 formate dehydrogenase 96.1 0.016 3.5E-07 56.9 7.3 36 203-239 196-231 (386)
68 PRK10792 bifunctional 5,10-met 96.1 0.016 3.5E-07 54.6 6.8 53 182-239 139-192 (285)
69 PRK14176 bifunctional 5,10-met 96.1 0.016 3.5E-07 54.7 6.7 53 182-239 144-197 (287)
70 PRK06487 glycerate dehydrogena 96.0 0.016 3.6E-07 55.1 6.9 34 203-236 145-178 (317)
71 PF02737 3HCDH_N: 3-hydroxyacy 96.0 0.0048 1E-07 54.0 2.9 31 208-239 1-31 (180)
72 PRK13304 L-aspartate dehydroge 96.0 0.018 3.9E-07 53.4 6.6 67 207-291 2-71 (265)
73 PRK07574 formate dehydrogenase 96.0 0.019 4.2E-07 56.3 7.2 35 203-238 189-223 (385)
74 PRK13243 glyoxylate reductase; 95.9 0.012 2.6E-07 56.5 5.4 37 201-238 145-181 (333)
75 PRK12549 shikimate 5-dehydroge 95.9 0.051 1.1E-06 51.0 9.4 51 185-239 110-160 (284)
76 COG0499 SAM1 S-adenosylhomocys 95.9 0.021 4.5E-07 55.5 6.7 56 180-239 186-241 (420)
77 PRK08410 2-hydroxyacid dehydro 95.9 0.013 2.8E-07 55.7 5.3 37 202-239 141-177 (311)
78 TIGR00507 aroE shikimate 5-deh 95.8 0.088 1.9E-06 48.7 10.5 50 185-239 100-149 (270)
79 PRK13301 putative L-aspartate 95.8 0.019 4.2E-07 53.6 5.7 67 207-292 3-73 (267)
80 PLN02928 oxidoreductase family 95.7 0.017 3.6E-07 55.9 5.4 36 202-238 155-190 (347)
81 PRK06436 glycerate dehydrogena 95.6 0.02 4.3E-07 54.4 5.5 34 203-236 119-152 (303)
82 PF00044 Gp_dh_N: Glyceraldehy 95.6 0.036 7.9E-07 47.5 6.6 33 207-239 1-34 (151)
83 PRK14188 bifunctional 5,10-met 95.6 0.037 8.1E-07 52.5 7.3 53 181-238 137-190 (296)
84 PRK14169 bifunctional 5,10-met 95.6 0.09 2E-06 49.6 9.6 55 181-240 135-190 (282)
85 PRK14191 bifunctional 5,10-met 95.6 0.038 8.2E-07 52.2 7.1 54 181-239 136-190 (285)
86 PRK00258 aroE shikimate 5-dehy 95.6 0.11 2.5E-06 48.2 10.2 51 185-239 105-156 (278)
87 PRK15469 ghrA bifunctional gly 95.5 0.025 5.3E-07 53.9 5.7 34 203-236 133-166 (312)
88 PRK06349 homoserine dehydrogen 95.5 0.013 2.8E-07 58.1 3.9 67 206-290 3-81 (426)
89 PRK14172 bifunctional 5,10-met 95.5 0.095 2.1E-06 49.3 9.4 55 181-240 137-192 (278)
90 TIGR02354 thiF_fam2 thiamine b 95.5 0.032 6.9E-07 49.8 5.9 36 204-239 19-54 (200)
91 PF03446 NAD_binding_2: NAD bi 95.4 0.033 7.1E-07 47.6 5.7 32 207-239 2-33 (163)
92 cd05212 NAD_bind_m-THF_DH_Cycl 95.4 0.071 1.5E-06 45.1 7.6 52 183-239 9-61 (140)
93 TIGR02356 adenyl_thiF thiazole 95.4 0.038 8.2E-07 49.2 6.2 36 204-239 19-54 (202)
94 PF07991 IlvN: Acetohydroxy ac 95.4 0.024 5.1E-07 49.4 4.6 37 204-241 2-38 (165)
95 PRK12480 D-lactate dehydrogena 95.4 0.028 6.1E-07 53.9 5.5 33 203-235 143-175 (330)
96 PF13241 NAD_binding_7: Putati 95.3 0.02 4.3E-07 45.5 3.8 37 202-238 3-39 (103)
97 COG0057 GapA Glyceraldehyde-3- 95.3 0.075 1.6E-06 51.1 8.3 32 207-238 2-35 (335)
98 smart00846 Gp_dh_N Glyceraldeh 95.3 0.13 2.7E-06 44.0 8.8 32 207-238 1-33 (149)
99 PRK11790 D-3-phosphoglycerate 95.3 0.029 6.4E-07 55.4 5.5 35 202-236 147-181 (409)
100 COG1712 Predicted dinucleotide 95.3 0.05 1.1E-06 49.9 6.4 69 207-292 1-71 (255)
101 PRK15409 bifunctional glyoxyla 95.2 0.029 6.3E-07 53.7 5.0 37 201-238 140-177 (323)
102 COG2085 Predicted dinucleotide 95.1 0.07 1.5E-06 48.2 7.0 33 207-240 2-34 (211)
103 TIGR00518 alaDH alanine dehydr 95.1 0.078 1.7E-06 51.7 8.0 35 204-239 165-199 (370)
104 TIGR01532 E4PD_g-proteo D-eryt 95.1 0.084 1.8E-06 50.7 8.0 32 208-239 1-36 (325)
105 TIGR01921 DAP-DH diaminopimela 95.1 0.042 9.1E-07 52.8 5.8 34 206-239 3-37 (324)
106 cd01079 NAD_bind_m-THF_DH NAD 95.0 0.082 1.8E-06 47.3 7.1 61 182-243 33-99 (197)
107 PRK00045 hemA glutamyl-tRNA re 95.0 0.11 2.4E-06 51.4 8.6 37 203-239 179-215 (423)
108 PRK09424 pntA NAD(P) transhydr 95.0 0.12 2.5E-06 52.7 8.9 49 190-239 139-197 (509)
109 PLN02545 3-hydroxybutyryl-CoA 94.9 0.027 5.9E-07 52.6 4.0 32 207-239 5-36 (295)
110 TIGR01809 Shik-DH-AROM shikima 94.9 0.18 3.8E-06 47.3 9.4 51 185-239 106-158 (282)
111 PRK00048 dihydrodipicolinate r 94.9 0.055 1.2E-06 49.9 6.0 34 207-240 2-37 (257)
112 PF01262 AlaDh_PNT_C: Alanine 94.9 0.04 8.6E-07 47.5 4.6 34 204-238 18-51 (168)
113 PLN02306 hydroxypyruvate reduc 94.9 0.043 9.2E-07 53.9 5.3 34 202-235 161-195 (386)
114 PRK09310 aroDE bifunctional 3- 94.8 0.21 4.6E-06 50.3 10.4 49 185-238 315-363 (477)
115 COG0169 AroE Shikimate 5-dehyd 94.8 0.26 5.7E-06 46.5 10.3 53 185-239 107-159 (283)
116 PRK08644 thiamine biosynthesis 94.8 0.061 1.3E-06 48.4 5.8 36 204-239 26-61 (212)
117 PRK13403 ketol-acid reductoiso 94.8 0.045 9.7E-07 52.7 5.1 32 204-235 14-45 (335)
118 PRK05690 molybdopterin biosynt 94.8 0.076 1.6E-06 48.8 6.4 36 204-239 30-65 (245)
119 PRK07530 3-hydroxybutyryl-CoA 94.7 0.13 2.8E-06 47.9 8.0 32 207-239 5-36 (292)
120 PRK08268 3-hydroxy-acyl-CoA de 94.7 0.033 7.1E-07 56.5 4.2 32 207-239 8-39 (507)
121 cd00757 ThiF_MoeB_HesA_family 94.7 0.066 1.4E-06 48.4 5.7 36 204-239 19-54 (228)
122 PRK13940 glutamyl-tRNA reducta 94.7 0.16 3.4E-06 50.4 8.7 47 192-239 168-214 (414)
123 PRK08223 hypothetical protein; 94.7 0.057 1.2E-06 51.1 5.4 36 204-239 25-60 (287)
124 TIGR02355 moeB molybdopterin s 94.6 0.047 1E-06 50.1 4.6 36 204-239 22-57 (240)
125 PRK05479 ketol-acid reductoiso 94.6 0.051 1.1E-06 52.3 5.0 31 204-234 15-45 (330)
126 PRK13303 L-aspartate dehydroge 94.6 0.1 2.2E-06 48.5 6.8 32 207-238 2-34 (265)
127 PRK09260 3-hydroxybutyryl-CoA 94.6 0.036 7.9E-07 51.6 3.9 32 207-239 2-33 (288)
128 PRK05808 3-hydroxybutyryl-CoA 94.6 0.056 1.2E-06 50.1 5.1 32 207-239 4-35 (282)
129 PRK15116 sulfur acceptor prote 94.6 0.084 1.8E-06 49.4 6.2 36 204-239 28-63 (268)
130 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.5 0.033 7.2E-07 56.5 3.8 32 207-239 6-37 (503)
131 PRK12475 thiamine/molybdopteri 94.5 0.059 1.3E-06 51.9 5.3 36 204-239 22-57 (338)
132 TIGR01327 PGDH D-3-phosphoglyc 94.5 0.058 1.3E-06 54.9 5.5 35 201-235 133-167 (525)
133 PRK14167 bifunctional 5,10-met 94.5 0.29 6.2E-06 46.6 9.6 54 182-240 137-195 (297)
134 PRK14183 bifunctional 5,10-met 94.4 0.11 2.3E-06 49.1 6.6 54 181-239 136-190 (281)
135 TIGR00561 pntA NAD(P) transhyd 94.4 0.2 4.4E-06 51.0 8.9 36 204-240 162-197 (511)
136 TIGR01546 GAPDH-II_archae glyc 94.4 0.082 1.8E-06 51.0 5.9 31 209-239 1-32 (333)
137 PLN00203 glutamyl-tRNA reducta 94.3 0.23 5E-06 50.7 9.3 48 192-239 251-299 (519)
138 PLN02616 tetrahydrofolate dehy 94.3 0.24 5.2E-06 48.3 9.0 54 181-239 210-264 (364)
139 PRK06719 precorrin-2 dehydroge 94.3 0.066 1.4E-06 45.9 4.7 35 202-236 9-43 (157)
140 PRK14982 acyl-ACP reductase; P 94.3 0.15 3.3E-06 49.3 7.6 54 184-238 133-189 (340)
141 TIGR00036 dapB dihydrodipicoli 94.3 0.098 2.1E-06 48.6 6.1 74 207-291 2-78 (266)
142 PRK07417 arogenate dehydrogena 94.3 0.16 3.6E-06 47.1 7.6 67 207-291 1-67 (279)
143 PRK14184 bifunctional 5,10-met 94.3 0.27 5.8E-06 46.5 8.9 53 182-239 137-194 (286)
144 PRK07819 3-hydroxybutyryl-CoA 94.3 0.04 8.7E-07 51.6 3.4 32 207-239 6-37 (286)
145 COG1052 LdhA Lactate dehydroge 94.3 0.11 2.3E-06 49.9 6.4 39 200-239 140-178 (324)
146 PLN02520 bifunctional 3-dehydr 94.2 0.28 6.2E-06 50.0 9.8 55 184-239 351-411 (529)
147 PRK14190 bifunctional 5,10-met 94.2 0.14 3E-06 48.4 6.9 53 182-239 138-191 (284)
148 PRK08293 3-hydroxybutyryl-CoA 94.2 0.051 1.1E-06 50.6 4.0 32 207-239 4-35 (287)
149 PRK14178 bifunctional 5,10-met 94.2 0.12 2.7E-06 48.6 6.5 54 181-239 131-185 (279)
150 PRK13581 D-3-phosphoglycerate 94.1 0.074 1.6E-06 54.2 5.3 34 202-235 136-169 (526)
151 cd00755 YgdL_like Family of ac 94.0 0.063 1.4E-06 49.1 4.2 36 204-239 9-44 (231)
152 PRK06718 precorrin-2 dehydroge 94.0 0.083 1.8E-06 47.2 4.7 35 202-236 6-40 (202)
153 TIGR00465 ilvC ketol-acid redu 94.0 0.096 2.1E-06 50.0 5.4 35 204-238 1-35 (314)
154 PRK04207 glyceraldehyde-3-phos 93.9 0.23 5.1E-06 47.8 8.0 33 207-239 2-35 (341)
155 PRK05472 redox-sensing transcr 93.9 0.13 2.8E-06 46.0 5.8 53 186-239 65-119 (213)
156 PRK08762 molybdopterin biosynt 93.9 0.13 2.7E-06 50.2 6.1 36 204-239 133-168 (376)
157 PRK14173 bifunctional 5,10-met 93.8 0.18 4E-06 47.6 6.9 54 181-239 134-188 (287)
158 PRK05597 molybdopterin biosynt 93.8 0.089 1.9E-06 51.0 5.0 36 204-239 26-61 (355)
159 PRK14177 bifunctional 5,10-met 93.8 0.18 4E-06 47.6 6.9 55 181-240 138-193 (284)
160 PRK14186 bifunctional 5,10-met 93.8 0.19 4.1E-06 47.8 7.0 53 182-239 138-191 (297)
161 PRK14170 bifunctional 5,10-met 93.8 0.18 4E-06 47.6 6.9 54 182-240 137-191 (284)
162 PRK14180 bifunctional 5,10-met 93.8 0.19 4.2E-06 47.4 6.9 53 182-239 138-191 (282)
163 PRK05600 thiamine biosynthesis 93.8 0.1 2.2E-06 51.0 5.2 87 204-290 39-140 (370)
164 PRK08605 D-lactate dehydrogena 93.7 0.093 2E-06 50.3 4.9 37 201-238 141-178 (332)
165 COG1648 CysG Siroheme synthase 93.7 0.24 5.2E-06 44.7 7.2 38 202-239 8-45 (210)
166 PLN02516 methylenetetrahydrofo 93.7 0.2 4.3E-06 47.7 6.9 54 181-239 146-200 (299)
167 PRK14171 bifunctional 5,10-met 93.7 0.2 4.3E-06 47.4 6.8 54 182-240 139-193 (288)
168 PF01408 GFO_IDH_MocA: Oxidore 93.6 0.19 4.2E-06 39.8 5.9 68 207-290 1-71 (120)
169 KOG0409 Predicted dehydrogenas 93.6 0.13 2.8E-06 49.0 5.5 51 204-265 33-83 (327)
170 PRK14166 bifunctional 5,10-met 93.6 0.21 4.5E-06 47.2 6.9 53 182-239 137-190 (282)
171 PLN02688 pyrroline-5-carboxyla 93.6 0.27 5.9E-06 44.9 7.5 31 207-238 1-36 (266)
172 TIGR01470 cysG_Nterm siroheme 93.6 0.11 2.3E-06 46.6 4.7 35 202-236 5-39 (205)
173 PRK14187 bifunctional 5,10-met 93.5 0.22 4.7E-06 47.3 6.9 54 182-240 140-194 (294)
174 COG1250 FadB 3-hydroxyacyl-CoA 93.5 0.07 1.5E-06 50.9 3.5 81 206-292 3-93 (307)
175 PRK01438 murD UDP-N-acetylmura 93.4 0.15 3.2E-06 50.8 5.9 41 198-239 8-48 (480)
176 COG1064 AdhP Zn-dependent alco 93.4 0.27 5.9E-06 47.6 7.4 43 196-239 158-200 (339)
177 TIGR01505 tartro_sem_red 2-hyd 93.3 0.17 3.6E-06 47.1 5.7 31 208-239 1-31 (291)
178 PF00070 Pyr_redox: Pyridine n 93.3 0.37 8.1E-06 35.9 6.6 42 208-252 1-42 (80)
179 PRK13535 erythrose 4-phosphate 93.2 0.27 5.8E-06 47.5 7.1 32 207-238 2-37 (336)
180 COG0190 FolD 5,10-methylene-te 93.2 0.22 4.7E-06 47.0 6.2 54 182-240 136-190 (283)
181 PRK14182 bifunctional 5,10-met 93.2 0.29 6.2E-06 46.2 7.0 53 182-239 137-190 (282)
182 COG2344 AT-rich DNA-binding pr 93.1 0.17 3.7E-06 45.2 5.1 55 185-240 64-120 (211)
183 KOG2380 Prephenate dehydrogena 93.1 0.11 2.4E-06 50.4 4.1 33 205-238 51-83 (480)
184 PRK07411 hypothetical protein; 93.1 0.13 2.8E-06 50.5 4.8 36 204-239 36-71 (390)
185 PRK11559 garR tartronate semia 93.1 0.28 6E-06 45.6 6.8 32 207-239 3-34 (296)
186 PF03721 UDPG_MGDP_dh_N: UDP-g 93.1 0.13 2.7E-06 45.4 4.2 32 207-239 1-32 (185)
187 PRK06476 pyrroline-5-carboxyla 93.1 0.25 5.4E-06 45.2 6.4 67 207-290 1-70 (258)
188 PRK05225 ketol-acid reductoiso 93.1 0.056 1.2E-06 54.2 2.2 30 204-233 34-63 (487)
189 PRK14174 bifunctional 5,10-met 93.0 0.6 1.3E-05 44.4 9.0 53 182-239 139-196 (295)
190 PF00899 ThiF: ThiF family; I 93.0 0.11 2.5E-06 42.7 3.7 34 206-239 2-35 (135)
191 COG0059 IlvC Ketol-acid reduct 93.0 0.091 2E-06 50.1 3.4 54 204-258 16-73 (338)
192 PRK07066 3-hydroxybutyryl-CoA 93.0 0.1 2.2E-06 50.1 3.8 32 207-239 8-39 (321)
193 KOG0455 Homoserine dehydrogena 93.0 0.22 4.8E-06 46.5 5.8 42 205-246 2-52 (364)
194 PRK06130 3-hydroxybutyryl-CoA 92.9 0.28 6.1E-06 46.0 6.7 32 207-239 5-36 (311)
195 KOG1370 S-adenosylhomocysteine 92.9 0.2 4.4E-06 48.0 5.5 35 204-239 212-246 (434)
196 PRK15461 NADH-dependent gamma- 92.9 0.26 5.7E-06 46.2 6.4 31 208-239 3-33 (296)
197 cd01487 E1_ThiF_like E1_ThiF_l 92.9 0.19 4.1E-06 43.7 5.1 32 208-239 1-32 (174)
198 PF01118 Semialdhyde_dh: Semia 92.9 0.21 4.6E-06 40.5 5.0 73 208-291 1-76 (121)
199 PRK04690 murD UDP-N-acetylmura 92.8 0.16 3.5E-06 50.8 5.1 35 204-239 6-40 (468)
200 PLN02712 arogenate dehydrogena 92.8 0.27 5.8E-06 51.7 6.9 31 205-235 51-81 (667)
201 COG5322 Predicted dehydrogenas 92.7 0.29 6.2E-06 46.2 6.2 50 184-233 145-195 (351)
202 PRK14618 NAD(P)H-dependent gly 92.7 0.39 8.4E-06 45.5 7.4 32 206-238 4-35 (328)
203 PRK12491 pyrroline-5-carboxyla 92.7 0.42 9.1E-06 44.5 7.5 66 207-291 3-73 (272)
204 PLN02712 arogenate dehydrogena 92.7 0.21 4.5E-06 52.5 6.0 38 200-238 363-400 (667)
205 PRK00676 hemA glutamyl-tRNA re 92.7 0.33 7.2E-06 46.9 6.8 52 188-240 157-208 (338)
206 KOG0068 D-3-phosphoglycerate d 92.6 0.1 2.2E-06 50.4 3.2 35 200-234 140-174 (406)
207 PRK07680 late competence prote 92.6 0.39 8.5E-06 44.3 7.0 33 207-239 1-36 (273)
208 COG1748 LYS9 Saccharopine dehy 92.5 0.21 4.5E-06 49.2 5.3 32 207-239 2-34 (389)
209 COG0569 TrkA K+ transport syst 92.5 0.17 3.7E-06 45.9 4.5 29 207-235 1-29 (225)
210 PRK14193 bifunctional 5,10-met 92.5 0.38 8.3E-06 45.4 6.8 53 182-239 138-193 (284)
211 PRK07531 bifunctional 3-hydrox 92.4 0.4 8.7E-06 48.4 7.4 32 207-239 5-36 (495)
212 PRK08300 acetaldehyde dehydrog 92.4 0.35 7.7E-06 46.0 6.6 35 205-239 3-38 (302)
213 PTZ00082 L-lactate dehydrogena 92.3 0.15 3.3E-06 48.7 4.0 37 204-241 4-41 (321)
214 PRK07679 pyrroline-5-carboxyla 92.3 0.54 1.2E-05 43.6 7.6 33 205-238 2-38 (279)
215 PLN02272 glyceraldehyde-3-phos 92.2 0.81 1.8E-05 45.5 9.0 33 207-239 86-119 (421)
216 PRK14181 bifunctional 5,10-met 92.2 0.45 9.7E-06 45.1 6.9 54 182-240 133-191 (287)
217 COG0677 WecC UDP-N-acetyl-D-ma 92.1 0.41 8.9E-06 47.3 6.7 74 207-289 10-92 (436)
218 PLN03096 glyceraldehyde-3-phos 92.1 0.51 1.1E-05 46.6 7.4 32 207-238 61-95 (395)
219 PLN02897 tetrahydrofolate dehy 92.0 0.4 8.7E-06 46.5 6.5 54 181-239 193-247 (345)
220 PRK07878 molybdopterin biosynt 92.0 0.26 5.5E-06 48.4 5.3 36 204-239 40-75 (392)
221 TIGR01035 hemA glutamyl-tRNA r 92.0 0.42 9.2E-06 47.2 6.9 45 193-239 168-213 (417)
222 PRK02472 murD UDP-N-acetylmura 92.0 0.28 6.1E-06 48.2 5.6 35 204-239 3-37 (447)
223 PRK11880 pyrroline-5-carboxyla 91.9 0.53 1.1E-05 43.0 7.0 32 207-239 3-37 (267)
224 PRK06129 3-hydroxyacyl-CoA deh 91.9 0.2 4.3E-06 47.2 4.3 32 207-239 3-34 (308)
225 PRK00094 gpsA NAD(P)H-dependen 91.9 0.56 1.2E-05 43.8 7.3 32 207-239 2-33 (325)
226 COG2084 MmsB 3-hydroxyisobutyr 91.8 0.36 7.8E-06 45.7 5.9 32 207-239 1-32 (286)
227 PRK12548 shikimate 5-dehydroge 91.7 0.57 1.2E-05 43.9 7.1 50 186-239 110-159 (289)
228 COG0345 ProC Pyrroline-5-carbo 91.7 0.52 1.1E-05 44.2 6.7 66 207-290 2-71 (266)
229 PRK07502 cyclohexadienyl dehyd 91.7 0.54 1.2E-05 44.2 7.0 33 206-239 6-40 (307)
230 PRK14619 NAD(P)H-dependent gly 91.7 0.3 6.4E-06 46.0 5.2 34 205-239 3-36 (308)
231 PRK08507 prephenate dehydrogen 91.6 0.43 9.2E-06 44.1 6.1 31 207-238 1-33 (275)
232 PRK12749 quinate/shikimate deh 91.6 0.63 1.4E-05 43.9 7.2 51 185-239 107-157 (288)
233 TIGR02441 fa_ox_alpha_mit fatt 91.6 0.16 3.5E-06 53.8 3.6 79 207-292 336-425 (737)
234 PRK11064 wecC UDP-N-acetyl-D-m 91.5 0.39 8.5E-06 47.4 6.0 32 207-239 4-35 (415)
235 PRK14106 murD UDP-N-acetylmura 91.5 0.33 7.1E-06 47.8 5.5 36 203-239 2-37 (450)
236 PF01210 NAD_Gly3P_dh_N: NAD-d 91.4 0.7 1.5E-05 39.2 6.8 72 208-291 1-79 (157)
237 PRK01710 murD UDP-N-acetylmura 91.3 0.31 6.7E-06 48.5 5.2 35 204-239 12-46 (458)
238 TIGR02437 FadB fatty oxidation 91.3 0.2 4.4E-06 52.9 4.0 84 207-292 314-403 (714)
239 PRK00066 ldh L-lactate dehydro 91.3 0.59 1.3E-05 44.6 6.8 34 205-239 5-40 (315)
240 PRK14168 bifunctional 5,10-met 91.3 0.57 1.2E-05 44.6 6.6 53 182-239 141-198 (297)
241 PRK11730 fadB multifunctional 91.3 0.21 4.6E-06 52.8 4.1 32 207-239 314-345 (715)
242 COG1179 Dinucleotide-utilizing 91.3 0.21 4.6E-06 46.2 3.5 36 204-239 28-63 (263)
243 PRK14185 bifunctional 5,10-met 91.1 0.64 1.4E-05 44.1 6.7 55 181-240 136-195 (293)
244 PRK14851 hypothetical protein; 91.1 0.34 7.3E-06 51.1 5.3 36 204-239 41-76 (679)
245 PRK08328 hypothetical protein; 91.1 0.31 6.6E-06 44.4 4.4 36 204-239 25-60 (231)
246 PRK09599 6-phosphogluconate de 91.0 0.34 7.4E-06 45.5 4.9 32 207-239 1-32 (301)
247 PLN02256 arogenate dehydrogena 90.9 0.59 1.3E-05 44.4 6.4 33 204-236 34-66 (304)
248 PRK07877 hypothetical protein; 90.9 0.29 6.3E-06 51.9 4.6 84 204-289 105-204 (722)
249 PRK14027 quinate/shikimate deh 90.7 0.8 1.7E-05 43.1 7.0 51 185-239 110-160 (283)
250 PRK07340 ornithine cyclodeamin 90.6 1.5 3.2E-05 41.6 8.8 107 168-291 91-198 (304)
251 PRK06153 hypothetical protein; 90.5 0.17 3.6E-06 49.9 2.3 36 204-239 174-209 (393)
252 PRK00141 murD UDP-N-acetylmura 90.5 0.44 9.4E-06 47.8 5.3 35 204-239 13-47 (473)
253 COG1063 Tdh Threonine dehydrog 90.5 0.95 2.1E-05 43.5 7.4 32 208-239 171-202 (350)
254 cd01492 Aos1_SUMO Ubiquitin ac 90.5 0.32 6.9E-06 43.2 3.9 36 204-239 19-54 (197)
255 PRK12550 shikimate 5-dehydroge 90.4 2.6 5.6E-05 39.5 10.1 50 185-239 106-155 (272)
256 TIGR01915 npdG NADPH-dependent 90.3 0.48 1E-05 42.4 5.0 31 207-238 1-32 (219)
257 PRK14620 NAD(P)H-dependent gly 90.3 0.89 1.9E-05 42.9 7.0 31 207-238 1-31 (326)
258 PRK02006 murD UDP-N-acetylmura 90.2 0.45 9.7E-06 47.8 5.1 36 204-240 5-40 (498)
259 PRK05717 oxidoreductase; Valid 90.2 0.62 1.4E-05 41.7 5.6 36 202-238 6-42 (255)
260 PRK03369 murD UDP-N-acetylmura 90.2 0.49 1.1E-05 47.6 5.4 35 204-239 10-44 (488)
261 TIGR03628 arch_S11P archaeal r 90.1 1.2 2.5E-05 36.6 6.6 65 179-243 38-111 (114)
262 PRK12490 6-phosphogluconate de 90.1 0.46 1E-05 44.6 4.9 32 207-239 1-32 (299)
263 PRK01390 murD UDP-N-acetylmura 90.1 0.47 1E-05 47.0 5.2 35 204-239 7-41 (460)
264 cd01485 E1-1_like Ubiquitin ac 90.1 0.4 8.7E-06 42.5 4.2 36 204-239 17-52 (198)
265 PRK07688 thiamine/molybdopteri 90.0 0.43 9.3E-06 46.0 4.7 36 204-239 22-57 (339)
266 PRK06928 pyrroline-5-carboxyla 90.0 1 2.2E-05 41.9 7.0 30 207-236 2-35 (277)
267 PF02254 TrkA_N: TrkA-N domain 90.0 0.56 1.2E-05 37.0 4.6 30 209-239 1-30 (116)
268 TIGR02440 FadJ fatty oxidation 89.9 0.34 7.3E-06 51.2 4.1 32 207-239 305-337 (699)
269 PRK04148 hypothetical protein; 89.8 0.73 1.6E-05 38.8 5.3 34 204-239 15-48 (134)
270 PLN02358 glyceraldehyde-3-phos 89.5 0.57 1.2E-05 45.3 5.1 34 207-240 6-40 (338)
271 PRK06522 2-dehydropantoate 2-r 89.4 0.59 1.3E-05 43.2 4.9 30 207-236 1-30 (304)
272 PRK09496 trkA potassium transp 89.4 0.98 2.1E-05 44.3 6.7 45 193-238 217-262 (453)
273 PRK09607 rps11p 30S ribosomal 89.3 1.5 3.3E-05 36.9 6.8 65 179-243 45-118 (132)
274 PRK08289 glyceraldehyde-3-phos 89.3 0.71 1.5E-05 46.5 5.6 37 204-240 125-166 (477)
275 cd08230 glucose_DH Glucose deh 89.3 1.2 2.6E-05 42.2 7.1 33 204-236 171-203 (355)
276 PRK04308 murD UDP-N-acetylmura 89.3 0.64 1.4E-05 45.9 5.4 35 204-239 3-37 (445)
277 PTZ00117 malate dehydrogenase; 89.3 0.42 9.1E-06 45.6 3.9 35 204-239 3-38 (319)
278 cd05291 HicDH_like L-2-hydroxy 89.2 0.63 1.4E-05 43.9 5.0 32 207-239 1-34 (306)
279 PRK11154 fadJ multifunctional 89.2 0.38 8.2E-06 50.8 3.9 32 207-239 310-342 (708)
280 PRK06567 putative bifunctional 89.1 0.88 1.9E-05 49.9 6.6 34 204-238 381-414 (1028)
281 PRK07060 short chain dehydroge 88.9 0.87 1.9E-05 40.1 5.5 36 202-238 5-41 (245)
282 PRK06035 3-hydroxyacyl-CoA deh 88.9 0.67 1.5E-05 43.2 4.9 32 207-239 4-35 (291)
283 PRK08628 short chain dehydroge 88.8 0.77 1.7E-05 41.0 5.1 36 201-236 2-38 (258)
284 PLN02896 cinnamyl-alcohol dehy 88.8 0.88 1.9E-05 43.1 5.7 37 201-237 5-42 (353)
285 PRK07634 pyrroline-5-carboxyla 88.8 1.7 3.8E-05 38.9 7.4 25 205-229 3-27 (245)
286 PRK00421 murC UDP-N-acetylmura 88.8 0.63 1.4E-05 46.2 4.9 35 204-239 5-40 (461)
287 TIGR00872 gnd_rel 6-phosphoglu 88.7 0.67 1.5E-05 43.5 4.9 32 207-239 1-32 (298)
288 PRK07523 gluconate 5-dehydroge 88.7 0.89 1.9E-05 40.6 5.4 35 203-238 7-42 (255)
289 PRK00683 murD UDP-N-acetylmura 88.7 0.69 1.5E-05 45.4 5.1 34 205-239 2-35 (418)
290 TIGR01832 kduD 2-deoxy-D-gluco 88.7 0.88 1.9E-05 40.3 5.4 34 203-236 2-36 (248)
291 PRK12826 3-ketoacyl-(acyl-carr 88.6 0.82 1.8E-05 40.3 5.1 34 204-237 4-38 (251)
292 cd01483 E1_enzyme_family Super 88.6 0.71 1.5E-05 38.2 4.5 32 208-239 1-32 (143)
293 PLN02206 UDP-glucuronate decar 88.6 0.77 1.7E-05 45.7 5.4 37 200-236 113-150 (442)
294 TIGR01202 bchC 2-desacetyl-2-h 88.6 0.74 1.6E-05 43.0 5.0 35 204-238 143-177 (308)
295 PRK06046 alanine dehydrogenase 88.5 2.6 5.6E-05 40.3 8.7 35 205-239 128-163 (326)
296 PLN02586 probable cinnamyl alc 88.5 1.6 3.4E-05 41.8 7.3 35 204-238 182-216 (360)
297 TIGR03026 NDP-sugDHase nucleot 88.4 0.6 1.3E-05 45.8 4.5 32 207-239 1-32 (411)
298 KOG2018 Predicted dinucleotide 88.4 0.62 1.3E-05 44.8 4.3 83 204-289 72-173 (430)
299 KOG0069 Glyoxylate/hydroxypyru 88.3 0.67 1.4E-05 44.8 4.5 33 201-233 157-189 (336)
300 smart00859 Semialdhyde_dh Semi 88.2 1.1 2.4E-05 36.0 5.2 32 208-239 1-34 (122)
301 PRK14852 hypothetical protein; 88.2 0.64 1.4E-05 50.7 4.8 36 204-239 330-365 (989)
302 TIGR03215 ac_ald_DH_ac acetald 88.1 1.3 2.9E-05 41.8 6.4 33 207-239 2-35 (285)
303 PRK00436 argC N-acetyl-gamma-g 88.1 1.1 2.4E-05 43.1 6.0 32 207-238 3-36 (343)
304 PRK12828 short chain dehydroge 87.8 0.96 2.1E-05 39.4 5.0 34 203-236 4-38 (239)
305 COG0287 TyrA Prephenate dehydr 87.8 1.7 3.6E-05 41.0 6.8 28 206-233 3-30 (279)
306 PF03435 Saccharop_dh: Sacchar 87.7 0.58 1.3E-05 45.2 3.8 67 209-290 1-76 (386)
307 COG0771 MurD UDP-N-acetylmuram 87.7 0.69 1.5E-05 46.4 4.4 36 204-240 5-40 (448)
308 PRK15059 tartronate semialdehy 87.7 0.84 1.8E-05 42.9 4.8 31 207-238 1-31 (292)
309 PRK06141 ornithine cyclodeamin 87.7 3.1 6.7E-05 39.5 8.7 67 168-239 91-159 (314)
310 TIGR01763 MalateDH_bact malate 87.5 2.2 4.8E-05 40.4 7.6 31 207-238 2-33 (305)
311 PRK07236 hypothetical protein; 87.5 1.1 2.3E-05 43.2 5.5 41 204-245 4-44 (386)
312 PRK06841 short chain dehydroge 87.5 1.1 2.5E-05 39.7 5.4 34 203-236 12-46 (255)
313 COG0300 DltE Short-chain dehyd 87.4 2.4 5.2E-05 39.7 7.6 35 204-238 4-39 (265)
314 PRK09291 short chain dehydroge 87.4 1.1 2.3E-05 40.0 5.1 32 206-237 2-34 (257)
315 PF02629 CoA_binding: CoA bind 87.4 0.6 1.3E-05 36.4 3.1 36 205-240 2-38 (96)
316 CHL00041 rps11 ribosomal prote 87.4 2.4 5.1E-05 34.8 6.7 66 179-244 48-114 (116)
317 PRK06249 2-dehydropantoate 2-r 87.3 0.73 1.6E-05 43.4 4.2 34 204-237 3-36 (313)
318 PRK05309 30S ribosomal protein 87.2 2.4 5.2E-05 35.4 6.7 65 179-243 52-117 (128)
319 PRK02705 murD UDP-N-acetylmura 87.1 0.94 2E-05 44.7 5.0 31 208-239 2-32 (459)
320 KOG0022 Alcohol dehydrogenase, 87.0 0.63 1.4E-05 44.8 3.5 50 179-235 173-223 (375)
321 PRK08618 ornithine cyclodeamin 87.0 3.1 6.7E-05 39.7 8.3 67 168-239 93-161 (325)
322 TIGR03632 bact_S11 30S ribosom 86.9 2.6 5.6E-05 34.1 6.6 66 179-244 35-101 (108)
323 PRK05557 fabG 3-ketoacyl-(acyl 86.9 1.5 3.3E-05 38.3 5.8 36 203-238 2-38 (248)
324 PRK12938 acetyacetyl-CoA reduc 86.9 1.4 3E-05 39.0 5.5 35 204-238 1-36 (246)
325 PRK12771 putative glutamate sy 86.8 1 2.2E-05 46.1 5.2 34 204-238 135-168 (564)
326 PF03853 YjeF_N: YjeF-related 86.8 5 0.00011 34.6 8.8 49 183-234 6-57 (169)
327 PRK07774 short chain dehydroge 86.8 1.4 3E-05 39.1 5.4 32 204-235 4-36 (250)
328 COG0673 MviM Predicted dehydro 86.7 2 4.3E-05 40.2 6.8 71 205-290 2-76 (342)
329 PLN02240 UDP-glucose 4-epimera 86.7 1.3 2.8E-05 41.5 5.5 34 203-236 2-36 (352)
330 PRK01368 murD UDP-N-acetylmura 86.6 0.98 2.1E-05 45.1 4.8 34 204-239 4-37 (454)
331 PRK06949 short chain dehydroge 86.5 1.5 3.2E-05 39.0 5.5 35 202-236 5-40 (258)
332 PRK15057 UDP-glucose 6-dehydro 86.4 2.3 5E-05 41.8 7.2 31 207-239 1-31 (388)
333 PRK03803 murD UDP-N-acetylmura 86.4 1.1 2.3E-05 44.3 5.0 33 206-239 6-38 (448)
334 PRK06138 short chain dehydroge 86.3 1.3 2.9E-05 39.1 5.1 34 203-236 2-36 (252)
335 PRK12921 2-dehydropantoate 2-r 86.3 1.1 2.3E-05 41.6 4.6 29 207-235 1-29 (305)
336 PRK07231 fabG 3-ketoacyl-(acyl 86.3 1.4 3.1E-05 38.8 5.3 34 203-236 2-36 (251)
337 PRK06223 malate dehydrogenase; 86.2 0.87 1.9E-05 42.7 4.0 32 207-239 3-35 (307)
338 PF13460 NAD_binding_10: NADH( 86.2 1.4 3.1E-05 37.2 5.0 31 209-239 1-32 (183)
339 TIGR02622 CDP_4_6_dhtase CDP-g 86.1 1.3 2.8E-05 41.9 5.2 33 204-236 2-35 (349)
340 PLN02695 GDP-D-mannose-3',5'-e 86.1 1.3 2.7E-05 42.8 5.1 32 205-236 20-52 (370)
341 TIGR03736 PRTRC_ThiF PRTRC sys 86.0 1.1 2.4E-05 41.4 4.5 25 205-229 10-34 (244)
342 PRK13394 3-hydroxybutyrate deh 86.0 1.5 3.2E-05 39.1 5.3 32 204-235 5-37 (262)
343 PRK12769 putative oxidoreducta 85.9 1.2 2.6E-05 46.5 5.2 35 204-239 325-359 (654)
344 PRK08217 fabG 3-ketoacyl-(acyl 85.9 1.6 3.4E-05 38.5 5.3 34 204-238 3-37 (253)
345 PRK12742 oxidoreductase; Provi 85.9 1.7 3.6E-05 38.1 5.5 32 204-235 4-36 (237)
346 PRK12429 3-hydroxybutyrate deh 85.9 1.5 3.3E-05 38.8 5.2 32 204-235 2-34 (258)
347 PRK09186 flagellin modificatio 85.8 1.5 3.3E-05 38.9 5.2 32 204-235 2-34 (256)
348 PRK09496 trkA potassium transp 85.8 1.1 2.4E-05 43.9 4.7 29 207-235 1-29 (453)
349 PRK08229 2-dehydropantoate 2-r 85.8 1.1 2.5E-05 42.3 4.6 29 207-235 3-31 (341)
350 PRK08339 short chain dehydroge 85.7 1.7 3.6E-05 39.5 5.5 36 202-238 4-40 (263)
351 PRK05786 fabG 3-ketoacyl-(acyl 85.7 1.6 3.5E-05 38.3 5.2 33 204-236 3-36 (238)
352 PRK06125 short chain dehydroge 85.7 1.7 3.8E-05 38.9 5.6 36 202-238 3-39 (259)
353 PLN00141 Tic62-NAD(P)-related 85.6 1.6 3.5E-05 39.3 5.3 35 204-238 15-50 (251)
354 PRK06057 short chain dehydroge 85.6 1.6 3.4E-05 39.0 5.3 32 204-235 5-37 (255)
355 PLN02427 UDP-apiose/xylose syn 85.6 1.5 3.2E-05 42.2 5.4 36 201-236 9-46 (386)
356 PRK06300 enoyl-(acyl carrier p 85.6 1.5 3.2E-05 41.4 5.3 35 202-237 4-41 (299)
357 PRK06523 short chain dehydroge 85.6 1.6 3.5E-05 38.9 5.4 35 202-236 5-40 (260)
358 KOG0029 Amine oxidase [Seconda 85.5 1.2 2.5E-05 45.4 4.8 35 204-239 13-47 (501)
359 PRK08642 fabG 3-ketoacyl-(acyl 85.5 1.7 3.6E-05 38.5 5.3 34 204-237 3-37 (253)
360 PLN02514 cinnamyl-alcohol dehy 85.5 2.8 6E-05 39.9 7.2 42 197-238 172-213 (357)
361 KOG0089 Methylenetetrahydrofol 85.4 0.67 1.4E-05 43.6 2.7 56 183-242 147-203 (309)
362 PRK12829 short chain dehydroge 85.4 1.5 3.3E-05 39.0 5.1 33 204-236 9-42 (264)
363 PRK12409 D-amino acid dehydrog 85.3 1.3 2.9E-05 42.8 4.9 32 207-239 2-33 (410)
364 PRK07806 short chain dehydroge 85.3 1.9 4.2E-05 38.1 5.6 34 204-237 4-38 (248)
365 PRK00711 D-amino acid dehydrog 85.3 1.4 2.9E-05 42.6 5.0 32 207-239 1-32 (416)
366 PRK05867 short chain dehydroge 85.3 1.8 3.9E-05 38.6 5.5 35 203-238 6-41 (253)
367 PRK15181 Vi polysaccharide bio 85.3 1.5 3.2E-05 41.7 5.2 36 202-237 11-47 (348)
368 PRK08703 short chain dehydroge 85.2 1.8 3.8E-05 38.3 5.3 34 203-236 3-37 (239)
369 PRK09072 short chain dehydroge 85.2 1.8 4E-05 38.8 5.5 34 203-236 2-36 (263)
370 PRK08416 7-alpha-hydroxysteroi 85.2 1.8 3.9E-05 38.9 5.5 37 202-238 4-41 (260)
371 PRK07533 enoyl-(acyl carrier p 85.1 1.6 3.5E-05 39.4 5.1 36 203-239 7-45 (258)
372 TIGR01087 murD UDP-N-acetylmur 85.1 1.1 2.4E-05 44.0 4.3 31 208-239 1-31 (433)
373 COG1893 ApbA Ketopantoate redu 85.1 0.47 1E-05 45.1 1.6 30 207-236 1-30 (307)
374 PRK06505 enoyl-(acyl carrier p 85.1 1.5 3.3E-05 40.1 5.0 34 204-238 5-41 (271)
375 PRK05875 short chain dehydroge 85.1 1.9 4.1E-05 38.9 5.6 34 203-236 4-38 (276)
376 PRK08818 prephenate dehydrogen 85.0 3 6.5E-05 40.9 7.2 33 205-238 3-37 (370)
377 PLN02662 cinnamyl-alcohol dehy 84.9 1.5 3.2E-05 40.5 4.9 32 205-236 3-35 (322)
378 PF01494 FAD_binding_3: FAD bi 84.9 1.5 3.2E-05 40.4 4.9 33 207-240 2-34 (356)
379 PRK06079 enoyl-(acyl carrier p 84.7 1.7 3.6E-05 39.2 5.0 32 204-235 5-39 (252)
380 PRK05562 precorrin-2 dehydroge 84.7 1.8 4E-05 39.4 5.2 35 203-237 22-56 (223)
381 PRK03806 murD UDP-N-acetylmura 84.7 1.6 3.5E-05 42.9 5.3 35 204-239 4-38 (438)
382 COG1004 Ugd Predicted UDP-gluc 84.7 1.8 4E-05 42.7 5.5 53 207-263 1-64 (414)
383 PRK03562 glutathione-regulated 84.6 1.1 2.4E-05 46.7 4.2 33 206-239 400-432 (621)
384 PRK08063 enoyl-(acyl carrier p 84.6 2 4.4E-05 37.9 5.5 35 204-238 2-37 (250)
385 PF00411 Ribosomal_S11: Riboso 84.5 3.6 7.7E-05 33.3 6.3 64 180-243 36-100 (110)
386 KOG1257 NADP+-dependent malic 84.5 16 0.00034 37.6 12.0 116 114-246 234-360 (582)
387 PF00056 Ldh_1_N: lactate/mala 84.5 1.3 2.8E-05 37.1 3.9 32 207-239 1-35 (141)
388 PRK07831 short chain dehydroge 84.5 1.8 3.8E-05 38.9 5.1 34 204-238 15-50 (262)
389 cd05283 CAD1 Cinnamyl alcohol 84.4 7.2 0.00016 36.4 9.4 41 197-238 162-202 (337)
390 PRK06753 hypothetical protein; 84.4 1.5 3.2E-05 41.7 4.7 32 207-239 1-32 (373)
391 PF02558 ApbA: Ketopantoate re 84.4 2 4.2E-05 35.5 4.9 30 209-238 1-30 (151)
392 PRK11891 aspartate carbamoyltr 84.2 48 0.001 33.2 16.0 140 105-259 132-291 (429)
393 PRK12770 putative glutamate sy 84.2 4.5 9.8E-05 38.5 8.0 36 204-239 170-205 (352)
394 COG0289 DapB Dihydrodipicolina 84.2 3.4 7.3E-05 38.7 6.8 75 206-291 2-79 (266)
395 PRK08849 2-octaprenyl-3-methyl 84.2 1.6 3.5E-05 41.9 5.0 32 207-239 4-35 (384)
396 PRK05876 short chain dehydroge 84.2 1.9 4.2E-05 39.5 5.2 35 204-239 4-39 (275)
397 KOG0023 Alcohol dehydrogenase, 84.2 2 4.3E-05 41.5 5.3 44 195-239 172-215 (360)
398 PRK08594 enoyl-(acyl carrier p 84.2 1.9 4.1E-05 39.0 5.1 35 203-238 4-41 (257)
399 PLN00198 anthocyanidin reducta 84.1 1.9 4.1E-05 40.5 5.3 34 203-236 6-40 (338)
400 PRK08945 putative oxoacyl-(acy 84.1 1.9 4E-05 38.3 5.0 34 204-238 10-44 (247)
401 PLN02214 cinnamoyl-CoA reducta 84.1 1.9 4.1E-05 40.9 5.3 34 204-237 8-42 (342)
402 PRK10669 putative cation:proto 84.0 1.2 2.5E-05 45.6 4.0 32 207-239 418-449 (558)
403 PRK09880 L-idonate 5-dehydroge 84.0 3.7 7.9E-05 38.7 7.2 34 204-238 168-202 (343)
404 KOG1502 Flavonol reductase/cin 83.9 2.5 5.5E-05 40.7 6.0 33 205-237 5-38 (327)
405 PRK03815 murD UDP-N-acetylmura 83.9 1.5 3.3E-05 43.1 4.7 31 207-239 1-31 (401)
406 PRK06171 sorbitol-6-phosphate 83.8 2.2 4.7E-05 38.4 5.3 33 203-235 6-39 (266)
407 PLN02986 cinnamyl-alcohol dehy 83.8 2.2 4.8E-05 39.6 5.6 34 205-238 4-38 (322)
408 cd08231 MDR_TM0436_like Hypoth 83.8 3.6 7.8E-05 38.8 7.1 41 197-237 169-210 (361)
409 PLN02172 flavin-containing mon 83.8 1.6 3.5E-05 43.8 4.9 35 204-239 8-42 (461)
410 PRK08264 short chain dehydroge 83.8 2 4.3E-05 37.8 5.0 33 204-236 4-38 (238)
411 PRK05708 2-dehydropantoate 2-r 83.7 1.6 3.4E-05 41.2 4.5 31 207-237 3-33 (305)
412 PTZ00090 40S ribosomal protein 83.7 5.4 0.00012 36.3 7.6 66 179-245 155-221 (233)
413 PRK06196 oxidoreductase; Provi 83.6 2.3 5E-05 39.7 5.6 36 201-236 21-57 (315)
414 PRK08265 short chain dehydroge 83.6 2.3 5E-05 38.3 5.4 35 203-238 3-38 (261)
415 PRK07984 enoyl-(acyl carrier p 83.6 2.1 4.5E-05 39.1 5.2 34 204-238 4-40 (262)
416 PRK07890 short chain dehydroge 83.6 2 4.4E-05 38.1 5.0 34 204-238 3-37 (258)
417 TIGR03366 HpnZ_proposed putati 83.6 4.3 9.3E-05 37.2 7.3 40 197-238 113-153 (280)
418 cd01491 Ube1_repeat1 Ubiquitin 83.6 1.6 3.4E-05 41.3 4.4 36 204-239 17-52 (286)
419 PRK06194 hypothetical protein; 83.5 2.3 4.9E-05 38.7 5.4 34 204-238 4-38 (287)
420 PRK06172 short chain dehydroge 83.4 2.2 4.8E-05 37.9 5.2 35 203-238 4-39 (253)
421 PRK08993 2-deoxy-D-gluconate 3 83.4 2.2 4.9E-05 38.2 5.2 33 203-235 7-40 (253)
422 TIGR03570 NeuD_NnaD sugar O-ac 83.4 2 4.4E-05 36.6 4.8 33 208-240 1-33 (201)
423 PRK12939 short chain dehydroge 83.4 2.3 5.1E-05 37.4 5.3 32 204-235 5-37 (250)
424 PLN02178 cinnamyl-alcohol dehy 83.4 3.9 8.4E-05 39.5 7.2 35 204-238 177-211 (375)
425 PRK07326 short chain dehydroge 83.3 2.2 4.7E-05 37.4 5.0 32 204-235 4-36 (237)
426 PRK06124 gluconate 5-dehydroge 83.2 2.5 5.5E-05 37.6 5.5 36 202-238 7-43 (256)
427 PRK07576 short chain dehydroge 83.2 2.4 5.2E-05 38.3 5.4 34 203-236 6-40 (264)
428 PLN02653 GDP-mannose 4,6-dehyd 83.2 2 4.2E-05 40.4 4.9 35 203-237 3-38 (340)
429 PRK08013 oxidoreductase; Provi 83.1 1.8 3.8E-05 42.0 4.7 34 206-240 3-36 (400)
430 CHL00194 ycf39 Ycf39; Provisio 83.1 2 4.4E-05 40.1 5.0 31 207-237 1-32 (317)
431 COG0654 UbiH 2-polyprenyl-6-me 83.1 2.1 4.5E-05 41.4 5.2 33 206-239 2-34 (387)
432 PRK08017 oxidoreductase; Provi 83.0 2.2 4.7E-05 37.9 5.0 30 207-236 3-33 (256)
433 PRK05579 bifunctional phosphop 82.9 4.5 9.8E-05 40.0 7.5 35 202-236 184-235 (399)
434 PRK05653 fabG 3-ketoacyl-(acyl 82.9 2.6 5.7E-05 36.7 5.4 33 204-236 3-36 (246)
435 PRK08936 glucose-1-dehydrogena 82.9 3 6.5E-05 37.4 5.9 35 203-237 4-39 (261)
436 COG0100 RpsK Ribosomal protein 82.8 5.7 0.00012 33.3 6.9 57 183-239 57-114 (129)
437 PRK08085 gluconate 5-dehydroge 82.8 2.7 5.8E-05 37.5 5.5 35 203-238 6-41 (254)
438 PRK07067 sorbitol dehydrogenas 82.7 2.5 5.5E-05 37.7 5.3 34 204-238 4-38 (257)
439 PRK05866 short chain dehydroge 82.7 2.7 5.9E-05 38.9 5.7 34 202-235 36-70 (293)
440 PRK12937 short chain dehydroge 82.7 2.8 6.1E-05 36.8 5.5 34 204-237 3-37 (245)
441 TIGR01850 argC N-acetyl-gamma- 82.7 2.3 5E-05 41.0 5.3 33 207-239 1-35 (346)
442 PRK12748 3-ketoacyl-(acyl-carr 82.7 2.2 4.7E-05 38.2 4.9 34 203-236 2-38 (256)
443 PRK12779 putative bifunctional 82.7 1.8 3.8E-05 47.4 5.0 35 204-239 304-338 (944)
444 PRK12825 fabG 3-ketoacyl-(acyl 82.7 2.8 6E-05 36.6 5.4 35 204-238 4-39 (249)
445 PRK08291 ectoine utilization p 82.7 8.2 0.00018 36.8 9.0 35 205-239 131-166 (330)
446 PTZ00434 cytosolic glyceraldeh 82.7 1.8 4E-05 42.2 4.6 32 207-238 4-40 (361)
447 cd05290 LDH_3 A subgroup of L- 82.6 1.7 3.7E-05 41.4 4.3 32 208-239 1-33 (307)
448 PRK07494 2-octaprenyl-6-methox 82.6 1.9 4E-05 41.3 4.6 34 205-239 6-39 (388)
449 PRK12746 short chain dehydroge 82.6 2.9 6.3E-05 37.1 5.6 33 203-235 3-36 (254)
450 PRK14804 ornithine carbamoyltr 82.6 11 0.00023 36.0 9.7 108 123-233 60-181 (311)
451 PRK06398 aldose dehydrogenase; 82.5 2.7 5.7E-05 37.9 5.4 34 203-236 3-37 (258)
452 PLN02166 dTDP-glucose 4,6-dehy 82.5 2.4 5.3E-05 42.1 5.5 37 200-236 114-151 (436)
453 PLN02657 3,8-divinyl protochlo 82.5 2.6 5.7E-05 41.1 5.7 36 201-236 55-91 (390)
454 PRK12831 putative oxidoreducta 82.4 2.1 4.7E-05 42.7 5.1 34 204-238 138-171 (464)
455 PLN02852 ferredoxin-NADP+ redu 82.4 1.9 4.1E-05 43.8 4.7 35 204-239 24-60 (491)
456 PRK06197 short chain dehydroge 82.4 2.5 5.3E-05 39.2 5.2 35 203-237 13-48 (306)
457 PRK06182 short chain dehydroge 82.3 2.6 5.7E-05 38.1 5.3 32 205-236 2-34 (273)
458 PRK11199 tyrA bifunctional cho 82.3 2.3 5E-05 41.4 5.2 35 204-239 96-131 (374)
459 PRK09135 pteridine reductase; 82.2 3 6.6E-05 36.6 5.5 34 204-237 4-38 (249)
460 PRK07814 short chain dehydroge 82.1 2.7 5.8E-05 37.9 5.3 35 203-238 7-42 (263)
461 PRK06935 2-deoxy-D-gluconate 3 82.1 2.9 6.3E-05 37.4 5.5 33 203-235 12-45 (258)
462 cd08239 THR_DH_like L-threonin 82.1 4.4 9.4E-05 37.8 6.8 38 198-236 157-195 (339)
463 PRK03659 glutathione-regulated 82.1 1.6 3.5E-05 45.2 4.2 32 207-239 401-432 (601)
464 PRK07062 short chain dehydroge 82.1 2.9 6.4E-05 37.5 5.5 36 202-238 4-40 (265)
465 PRK07577 short chain dehydroge 82.1 2.8 6E-05 36.7 5.2 32 205-236 2-34 (234)
466 cd08295 double_bond_reductase_ 82.0 5.3 0.00012 37.4 7.4 35 204-238 150-185 (338)
467 PTZ00142 6-phosphogluconate de 82.0 1.9 4.2E-05 43.5 4.6 32 207-239 2-33 (470)
468 PLN03154 putative allyl alcoho 82.0 5 0.00011 38.2 7.3 35 204-238 157-192 (348)
469 PRK06847 hypothetical protein; 82.0 2.1 4.6E-05 40.6 4.7 33 206-239 4-36 (375)
470 TIGR01534 GAPDH-I glyceraldehy 81.9 1.8 3.8E-05 41.8 4.1 31 208-238 1-34 (327)
471 PRK07792 fabG 3-ketoacyl-(acyl 81.9 2.9 6.3E-05 39.0 5.6 36 202-238 8-44 (306)
472 PRK07035 short chain dehydroge 81.9 3 6.4E-05 37.1 5.4 34 203-236 5-39 (252)
473 TIGR00670 asp_carb_tr aspartat 81.9 41 0.0009 31.9 13.4 125 123-259 56-199 (301)
474 PRK12809 putative oxidoreducta 81.8 2.1 4.7E-05 44.5 5.1 34 205-239 309-342 (639)
475 PRK12810 gltD glutamate syntha 81.8 2.2 4.8E-05 42.6 5.0 34 204-238 141-174 (471)
476 PRK07856 short chain dehydroge 81.8 3.2 7E-05 37.0 5.6 34 203-236 3-37 (252)
477 PRK11579 putative oxidoreducta 81.8 2.5 5.4E-05 40.3 5.1 33 207-239 5-39 (346)
478 PLN02858 fructose-bisphosphate 81.7 3 6.5E-05 47.5 6.4 63 207-288 325-387 (1378)
479 PRK08213 gluconate 5-dehydroge 81.7 3.2 7E-05 37.1 5.6 35 203-238 9-44 (259)
480 PRK06914 short chain dehydroge 81.7 3.1 6.7E-05 37.7 5.5 32 205-236 2-34 (280)
481 TIGR00978 asd_EA aspartate-sem 81.7 2.7 5.8E-05 40.4 5.3 33 207-239 1-35 (341)
482 TIGR03206 benzo_BadH 2-hydroxy 81.7 2.8 6.1E-05 36.9 5.2 32 204-235 1-33 (250)
483 PRK08850 2-octaprenyl-6-methox 81.7 2.2 4.8E-05 41.3 4.8 33 206-239 4-36 (405)
484 PRK08261 fabG 3-ketoacyl-(acyl 81.7 7.7 0.00017 38.1 8.7 33 203-235 207-240 (450)
485 PRK05993 short chain dehydroge 81.6 2.8 6E-05 38.2 5.2 32 205-236 3-35 (277)
486 PRK06550 fabG 3-ketoacyl-(acyl 81.6 2.8 6.1E-05 36.7 5.1 33 203-235 2-35 (235)
487 COG0644 FixC Dehydrogenases (f 81.6 2.1 4.6E-05 41.6 4.7 50 206-256 3-56 (396)
488 PRK10309 galactitol-1-phosphat 81.6 5.3 0.00011 37.5 7.2 35 204-238 159-193 (347)
489 PRK10637 cysG siroheme synthas 81.6 2.1 4.6E-05 42.8 4.7 35 202-236 8-42 (457)
490 PF01266 DAO: FAD dependent ox 81.6 2.5 5.4E-05 38.9 5.0 31 208-239 1-31 (358)
491 TIGR03201 dearomat_had 6-hydro 81.5 5.2 0.00011 37.8 7.2 32 205-236 166-197 (349)
492 PRK08415 enoyl-(acyl carrier p 81.5 2.5 5.5E-05 38.8 4.9 35 204-239 3-40 (274)
493 PLN02350 phosphogluconate dehy 81.5 1.8 3.9E-05 44.0 4.2 32 207-239 7-38 (493)
494 TIGR01381 E1_like_apg7 E1-like 81.5 1.9 4.2E-05 45.1 4.5 36 204-239 336-371 (664)
495 PRK06500 short chain dehydroge 81.5 2.8 6.1E-05 36.9 5.1 32 204-235 4-36 (249)
496 PRK06545 prephenate dehydrogen 81.5 1.9 4.1E-05 41.7 4.2 31 207-238 1-31 (359)
497 PRK10206 putative oxidoreducta 81.4 2.4 5.2E-05 40.6 4.9 33 207-239 2-37 (344)
498 cd01339 LDH-like_MDH L-lactate 81.4 1.2 2.6E-05 41.8 2.8 30 209-239 1-31 (300)
499 PRK08226 short chain dehydroge 81.4 2.8 6.2E-05 37.4 5.1 32 204-235 4-36 (263)
500 cd05188 MDR Medium chain reduc 81.3 6.4 0.00014 34.6 7.3 42 197-238 126-167 (271)
No 1
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=3.4e-101 Score=747.46 Aligned_cols=295 Identities=87% Similarity=1.359 Sum_probs=291.5
Q ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHhcCCCceEEEEEEEEeCCCceeEEEEEEEeecCCCCCCCCCceeecCCCHHHH
Q 036924 1 MNALVATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEV 80 (295)
Q Consensus 1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~G~rv~h~~~~Gp~kGGiR~~~~~t~~Ev 80 (295)
|++|++++++|++|+++++++|++.++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|++|+
T Consensus 1 ~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ev 80 (410)
T PLN02477 1 MNALAATNRNFREAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPDEV 80 (410)
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCccceeccCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCHHHHHHHHHHhchh
Q 036924 81 NALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKF 160 (295)
Q Consensus 81 ~~LA~~Mt~K~al~~lp~GGaKGgI~~dP~~~s~~e~erl~r~f~~~l~~~iG~~~dipapDvgt~~~~m~w~~d~~~~~ 160 (295)
++||+||||||||++||||||||||.+||+++|+.|+|+++|+|+++|.+++||++|||||||||++++|+||+|+|+++
T Consensus 81 ~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~ 160 (410)
T PLN02477 81 NALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKF 160 (410)
T ss_pred HHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCccccCCCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 161 HGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 161 ~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
.|++|+++||||+.+|||.+|.++|||||+++++++++++|.+++|+||+||||||||+++|++|.++|+|||||||++|
T Consensus 161 ~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G 240 (410)
T PLN02477 161 HGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITG 240 (410)
T ss_pred hCCCCceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCccccCceEEecccccCCCC
Q 036924 241 AIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 241 ~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
++|||+|||+++|++++++++++.+|++++.++++++|..+||||||||++|+||
T Consensus 241 ~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~~~DvliP~Al~~~I~ 295 (410)
T PLN02477 241 AVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVEPCDVLIPAALGGVIN 295 (410)
T ss_pred eEECCCCCCHHHHHHHHHhcCchhccccceEecCccceeccccEEeeccccccCC
Confidence 9999999999999999999999999999888999999999999999999999997
No 2
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-99 Score=725.84 Aligned_cols=294 Identities=47% Similarity=0.801 Sum_probs=288.8
Q ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHhcCCCceEEEEEEEEeCCCceeEEEEEEEeecCCCCCCCCCceeecCCCHHHHH
Q 036924 2 NALVATNRNFKLAARLLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVN 81 (295)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~G~rv~h~~~~Gp~kGGiR~~~~~t~~Ev~ 81 (295)
++|+++++++++|++.++++++++++|++|+|.++|++||+||+|++++|+|||||||+++||+|||+||||++|++|++
T Consensus 2 ~~~~~a~~~~~~~~~~~~~~~~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~~~ev~ 81 (411)
T COG0334 2 NEFEQAVKELEKALEPLYLDEGVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVTLEEVK 81 (411)
T ss_pred cHHHHHHHHHHHhhhhccCchhHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCCHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCccceeccCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCHHHHHHHHHHhchhc
Q 036924 82 ALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFH 161 (295)
Q Consensus 82 ~LA~~Mt~K~al~~lp~GGaKGgI~~dP~~~s~~e~erl~r~f~~~l~~~iG~~~dipapDvgt~~~~m~w~~d~~~~~~ 161 (295)
+||+||||||||++||||||||||++||+.+|+.|+|||+|+|+++|.+++||++|||||||||++|+|+||+|+|+++.
T Consensus 82 ~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~ 161 (411)
T COG0334 82 ALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIV 161 (411)
T ss_pred HHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCccccCccccCCCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 162 GH-SPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 162 g~-~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
|. +||++||||+++|||.+|.+||||||+++++++++.++.+++|+|||||||||||+++|++|++.|+|||++||++|
T Consensus 162 g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 162 GNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred CCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 76 59999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCccccCceEEecccccCCCC
Q 036924 241 AIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 241 ~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
+||||+|||+++|++.+++.+++.+|++++.++++++|++|||||+|||++|+||
T Consensus 242 ~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~PcA~~n~I~ 296 (411)
T COG0334 242 GIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILIPCALENVIT 296 (411)
T ss_pred ceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEcccccccccc
Confidence 9999999999999988878899999999999999999999999999999999997
No 3
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-98 Score=730.36 Aligned_cols=294 Identities=30% Similarity=0.494 Sum_probs=287.3
Q ss_pred CHHHHHHHHHHHHHHHcCCCHH-----HHHHhcCCCceEEEEEEEEeCCCceeEEEEEEEeecCCCCCCCCCceeecCCC
Q 036924 2 NALVATNRNFKLAARLLGLDSK-----LEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVD 76 (295)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~~~~p~~~d~g~~~~~~G~rv~h~~~~Gp~kGGiR~~~~~t 76 (295)
++||+++.+|++|+++++++|+ ++++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|
T Consensus 19 eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~~lGP~kGGiR~~p~v~ 98 (445)
T PRK14030 19 EYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNNAIGPYKGGIRFHPSVN 98 (445)
T ss_pred HHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecCcccCCCCcEEecCCCC
Confidence 5799999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCccceeccCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCHHHHHHHHHH
Q 036924 77 PDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDE 156 (295)
Q Consensus 77 ~~Ev~~LA~~Mt~K~al~~lp~GGaKGgI~~dP~~~s~~e~erl~r~f~~~l~~~iG~~~dipapDvgt~~~~m~w~~d~ 156 (295)
++|+++||+||||||||++||||||||||.+||+.+|+.|+||++|+|+++|.++|||++|||||||||++++|+||+|+
T Consensus 99 ~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~ 178 (445)
T PRK14030 99 LSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGM 178 (445)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCCCCccccCccccCCCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 157 YSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 157 ~~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
|+++.++.++++||||+.+|||.+|.+||||||++++++++++.|.+++|+||+||||||||+++|++|.+.|++||+||
T Consensus 179 y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavS 258 (445)
T PRK14030 179 YKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTIS 258 (445)
T ss_pred HHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEECCCCCCHHH---HHHHHHhcCCcc-----cCCCCeeeCCCCccccCceEEecccccCCCC
Q 036924 237 DISGAIKNSKGIDVPS---LLKHVKEHRGVK-----GFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 237 D~~G~iy~~~GlD~~~---l~~~~~~~g~~~-----~~~~~~~~~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
|++|+||||+|||+++ |++++++++++. .||+++.++++++|+++||||+|||++|+||
T Consensus 259 D~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n~I~ 325 (445)
T PRK14030 259 GPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQNELN 325 (445)
T ss_pred cCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccccCC
Confidence 9999999999999888 888999888875 7888888999999999999999999999997
No 4
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-95 Score=711.80 Aligned_cols=294 Identities=30% Similarity=0.522 Sum_probs=286.5
Q ss_pred CHHHHHHHHHHHHHHHcCCCHH-----HHHHhcCCCceEEEEEEEEeCCCceeEEEEEEEeecCCCCCCCCCceeecCCC
Q 036924 2 NALVATNRNFKLAARLLGLDSK-----LEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVD 76 (295)
Q Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~-----~~~~l~~p~r~~~~~~p~~~d~g~~~~~~G~rv~h~~~~Gp~kGGiR~~~~~t 76 (295)
++|++++.+|++|+++|+++|+ ++++|++|+|+++|+|||+||||++++|+|||||||+++||+|||+||||+++
T Consensus 23 ~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~~~~GPakGG~R~~p~v~ 102 (445)
T PRK09414 23 EFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFNSAIGPYKGGLRFHPSVN 102 (445)
T ss_pred hHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEecCCCcCCCCceeecCCCC
Confidence 6899999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCccceeccCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCHHHHHHHHHH
Q 036924 77 PDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDE 156 (295)
Q Consensus 77 ~~Ev~~LA~~Mt~K~al~~lp~GGaKGgI~~dP~~~s~~e~erl~r~f~~~l~~~iG~~~dipapDvgt~~~~m~w~~d~ 156 (295)
++|+.+||+||||||||++||||||||||.+||+++|+.|+|||+|+|+++|.+++||.+|||||||||++++|+||+|+
T Consensus 103 ~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~ 182 (445)
T PRK09414 103 LSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQ 182 (445)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchhcCCCCccccCccccCCCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 157 YSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 157 ~~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
|+++.++..|++||||+.+|||.+|.++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||+||
T Consensus 183 y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavs 262 (445)
T PRK09414 183 YKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCS 262 (445)
T ss_pred HHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence 99999987799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEECCCCCCHHHHHHHHHhc-CCcccCC---CCeeeCCCCccccCceEEecccccCCCC
Q 036924 237 DISGAIKNSKGIDVPSLLKHVKEH-RGVKGFS---GGDSIDSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 237 D~~G~iy~~~GlD~~~l~~~~~~~-g~~~~~~---~~~~~~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
|++|++|||+|||+++|+++++++ +++.+|+ +++.++++++|+++||||||||++|+||
T Consensus 263 Ds~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~~d~DVliPaAl~n~It 325 (445)
T PRK09414 263 DSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWSVPCDIALPCATQNELD 325 (445)
T ss_pred cCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccccCCcEEEecCCcCcCC
Confidence 999999999999999999999887 5888887 4567899999999999999999999997
No 5
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=6.4e-92 Score=686.41 Aligned_cols=293 Identities=30% Similarity=0.496 Sum_probs=278.7
Q ss_pred HHHHHHHHHHHHHHHcCCCHHH-----HHHhcCCCceEEEEEEEEeCCCceeEEEEEEEeecCCCCCCCCCceeecCCCH
Q 036924 3 ALVATNRNFKLAARLLGLDSKL-----EKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDP 77 (295)
Q Consensus 3 ~~~~~~~~~~~a~~~~~~~~~~-----~~~l~~p~r~~~~~~p~~~d~g~~~~~~G~rv~h~~~~Gp~kGGiR~~~~~t~ 77 (295)
++|.++..+..-..+++-+|++ +++|++|+|+++|+|||+||||++++|+|||||||+++||+||||||||++|+
T Consensus 20 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~~lGP~kGGiR~~p~v~~ 99 (444)
T PRK14031 20 YHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNNAIGPYKGGIRFHASVNL 99 (444)
T ss_pred HHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecCCCcCCCCCeeecCCCCH
Confidence 5677788888888888877776 56999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCccceeccCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCHHHHHHHHHHh
Q 036924 78 DEVNALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEY 157 (295)
Q Consensus 78 ~Ev~~LA~~Mt~K~al~~lp~GGaKGgI~~dP~~~s~~e~erl~r~f~~~l~~~iG~~~dipapDvgt~~~~m~w~~d~~ 157 (295)
+|+++||+||||||||++||||||||||.+||+++|+.|+||++|+|+++|.++|||++|||||||||++++|+||+|+|
T Consensus 100 ~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y 179 (444)
T PRK14031 100 GILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMY 179 (444)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhcCCCCccccCccccCCCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEec
Q 036924 158 SKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 158 ~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD 237 (295)
+++.++.+|++||||+.+|||.+|.+||||||+++++++++++|.+++|+||+||||||||+++|++|.+.|++||+|||
T Consensus 180 ~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 180 KKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEECCCCCCHHHHH---HHHHh-cCCcccCC---CCeeeCCCCccccCceEEecccccCCCC
Q 036924 238 ISGAIKNSKGIDVPSLL---KHVKE-HRGVKGFS---GGDSIDSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 238 ~~G~iy~~~GlD~~~l~---~~~~~-~g~~~~~~---~~~~~~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
++|++|||+|||+++|. +++++ ++++.+|+ +++.++++++|+.+||||+|||++|+||
T Consensus 260 ~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~~d~~~~~~cDIliPaAl~n~I~ 324 (444)
T PRK14031 260 SDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVEGARPWGEKGDIALPSATQNELN 324 (444)
T ss_pred CCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcCCcccccCCCcEEeecccccccC
Confidence 99999999999999986 55555 57787776 5677899999999999999999999997
No 6
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-91 Score=681.14 Aligned_cols=292 Identities=28% Similarity=0.477 Sum_probs=271.4
Q ss_pred HHHHHHHHHHHHHHcCCCH---HHHHHhcCCCceEEEEEEEEeCCCceeEEEEEEEeecCCCCCCCCCceeecCCCHHHH
Q 036924 4 LVATNRNFKLAARLLGLDS---KLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEV 80 (295)
Q Consensus 4 ~~~~~~~~~~a~~~~~~~~---~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~G~rv~h~~~~Gp~kGGiR~~~~~t~~Ev 80 (295)
+|.+...++.-..+++-+| .++++|++|+|+++|++||+||||++++|+|||||||+++||+|||+||||++|++|+
T Consensus 32 ~qa~~e~~~~~~~~~~~~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn~alGP~kGGlRfhp~v~~~~v 111 (454)
T PTZ00079 32 LQAFHEVMTSLKPLFQKNPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYNSALGPYKGGLRFHPSVNLSIL 111 (454)
T ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEcCCCCCCCCCEEeeCCCCHHHH
Confidence 3444444444444444444 4688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCCCCccceeccCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCHHHHHHHHHHhchh
Q 036924 81 NALAQLMTWKTAVANIPYGGAKGGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKF 160 (295)
Q Consensus 81 ~~LA~~Mt~K~al~~lp~GGaKGgI~~dP~~~s~~e~erl~r~f~~~l~~~iG~~~dipapDvgt~~~~m~w~~d~~~~~ 160 (295)
++||++|||||||++||||||||||.+||+.+|+.|++|++|+|+++|.++|||++|||||||||++++|+||+++|+++
T Consensus 112 k~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~y~~~ 191 (454)
T PTZ00079 112 KFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKL 191 (454)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccccCccccCCCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 161 HGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 161 ~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
.+..|+++||||+.+|||.+|.+||||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||+|||++|
T Consensus 192 ~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G 271 (454)
T PTZ00079 192 RNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDG 271 (454)
T ss_pred hCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEECCCCCCHHHH---HHHHHhc-CCcccCC----CCeeeCCCCccccCceEEecccccCCCC
Q 036924 241 AIKNSKGIDVPSL---LKHVKEH-RGVKGFS----GGDSIDSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 241 ~iy~~~GlD~~~l---~~~~~~~-g~~~~~~----~~~~~~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
+||||+|||+++| .++++.+ +++.+|+ +++.++++++|+++||||+|||++|+||
T Consensus 272 ~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~n~I~ 334 (454)
T PTZ00079 272 YIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQNEIN 334 (454)
T ss_pred cEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccccccCC
Confidence 9999999999887 6677654 7777774 5778899999999999999999999997
No 7
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-82 Score=612.86 Aligned_cols=273 Identities=54% Similarity=0.882 Sum_probs=262.9
Q ss_pred HHHHHhcCCCceEEEEEEEEeCCCceeEEEEEEEeecCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHhhhCCCCCCcc
Q 036924 23 KLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAK 102 (295)
Q Consensus 23 ~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~G~rv~h~~~~Gp~kGGiR~~~~~t~~Ev~~LA~~Mt~K~al~~lp~GGaK 102 (295)
.++.+|..|+|+++|++||.+|+|+.++++||||||+.+|||+||||||||++++||+++||+.||||||++++||||||
T Consensus 66 ~Il~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaK 145 (514)
T KOG2250|consen 66 AILFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAK 145 (514)
T ss_pred hhhhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCc
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCHHHHHHHHHHhchhcCCCCccccCccccCCCCCCCC
Q 036924 103 GGIGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRD 182 (295)
Q Consensus 103 GgI~~dP~~~s~~e~erl~r~f~~~l~~~iG~~~dipapDvgt~~~~m~w~~d~~~~~~g~~~~~~tGkp~~~GG~~~r~ 182 (295)
|||.+||+.+|..|+||+||+|+++|.+++||.+|+|+|||||+++||.|++++|++.+|++++++||||+.||||++|.
T Consensus 146 GGi~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~ 225 (514)
T KOG2250|consen 146 GGILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRY 225 (514)
T ss_pred CccccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHcC--CCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCCHHHHHHHHHhc
Q 036924 183 AATGRGVLFAMEALLNEHG--KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEH 260 (295)
Q Consensus 183 ~aTg~Gv~~~~~~~l~~~g--~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~ 260 (295)
+||||||+++++.+++.++ .+++|+||+||||||||++++++|++.|++||||+|++|++|||+|||+++|.++++++
T Consensus 226 ~ATG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL~~~~~~k 305 (514)
T KOG2250|consen 226 EATGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEELLDLADEK 305 (514)
T ss_pred cccchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHHHHHHHhh
Confidence 9999999999999999887 56999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCeeeCCC-------CccccCceEEecccccCCCC
Q 036924 261 RGVKGFSGGDSIDSN-------SILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 261 g~~~~~~~~~~~~~~-------~~l~~~~DvlipaA~~~~I~ 295 (295)
+++.+|+++....+. ..|..+|||++|||.+|+||
T Consensus 306 ~~i~~f~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I~ 347 (514)
T KOG2250|consen 306 KTIKSFDGAKLSYEGYIAGLPPWTLVEKCDILVPCATQNEIT 347 (514)
T ss_pred ccccccccccccCccccccCcchhhHhhCcEEeecCccCccc
Confidence 999999887654433 67788999999999999997
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=9.5e-59 Score=482.11 Aligned_cols=264 Identities=25% Similarity=0.307 Sum_probs=243.2
Q ss_pred HcCCCHHHHHHhcCCCceEEEEEEEEeCCCceeEEEEEEEeecCCCCCCCCCceeecC-----------CCHHHHHHHHH
Q 036924 17 LLGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPE-----------VDPDEVNALAQ 85 (295)
Q Consensus 17 ~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~G~rv~h~~~~Gp~kGGiR~~~~-----------~t~~Ev~~LA~ 85 (295)
-++++|++++.|..|++++.+.+|+ | ..|+|||+||+.+ +||||||||+ ++++|+++||.
T Consensus 458 sFrldp~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~ 528 (1002)
T PTZ00324 458 AFRLDPSFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLAS 528 (1002)
T ss_pred EEeCCHHHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHH
Confidence 3589999999999999999999999 4 8999999999998 9999999998 88999999999
Q ss_pred HHHHHHhhhCCCCCCccceeccCCCCCCH---HHHHHHHHHHHHHHHhhcCCCCcc-----------cCCCCCCCHHHHH
Q 036924 86 LMTWKTAVANIPYGGAKGGIGCNPVDLSI---SELERLTRVFTQKIHDLIGIHADV-----------PAPDMGTGPQTMA 151 (295)
Q Consensus 86 ~Mt~K~al~~lp~GGaKGgI~~dP~~~s~---~e~erl~r~f~~~l~~~iG~~~di-----------papDvgt~~~~m~ 151 (295)
||||||| +||+|||||||.+||+.+++ .|+|+++|+|+++|.+++||..|| ||||+||+++.|+
T Consensus 529 tqt~KNa--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntta~~md 606 (1002)
T PTZ00324 529 TQLLKNK--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMD 606 (1002)
T ss_pred HHHHhcC--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHhcCCCcccccccCCccccccCCCCCCCHHHHH
Confidence 9999997 99999999999999999887 889999999999999999999999 9999999999999
Q ss_pred HHHHHhchhcCCC--CccccCccccCCCCCCCC-CchHHHHHHHHHHHHHHcCCCCCCCEEEEEc--CcHHHHHHHHHHH
Q 036924 152 WILDEYSKFHGHS--PAVVTGKPIDLGGSLGRD-AATGRGVLFAMEALLNEHGKNIAGQRFVIQG--FGNVGSWAARLIG 226 (295)
Q Consensus 152 w~~d~~~~~~g~~--~~~~tGkp~~~GG~~~r~-~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG--fGnVG~~~a~~L~ 226 (295)
|| ++|++.+|++ ++++||||+.+||+.++. ++||+||+++++++++++|+++++.||++|| |||||++.++++.
T Consensus 607 wa-~~~s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~lls~ 685 (1002)
T PTZ00324 607 WA-ALHAKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLLSK 685 (1002)
T ss_pred HH-HHHHHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHHHHhC
Confidence 99 8999999984 899999999999998887 9999999999999999999999999999999 9999999998864
Q ss_pred HCCCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccC---------------------CCCeee-----CCCCc---
Q 036924 227 EKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGF---------------------SGGDSI-----DSNSI--- 277 (295)
Q Consensus 227 ~~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~---------------------~~~~~~-----~~~~~--- 277 (295)
+|||||+|.+|.+|||+|||+++|.+++++++++.+| |+.+.+ ..+++
T Consensus 686 ---~klVAv~D~~G~~~DP~GLd~~EL~rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~~~l~ 762 (1002)
T PTZ00324 686 ---EKTVGIVDGSGVLHDPEGLNREELRRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEFHLL 762 (1002)
T ss_pred ---CEEEEEEcCCCEEECCCCCCHHHHHHHHHcCCCcccCchhhccCCCceeecccccccCCccceeccccccchhhccc
Confidence 7999999999999999999999999999998888754 222222 23444
Q ss_pred cccCceEEecccc-cCCCC
Q 036924 278 LIEDCDVLIPAAL-GGVIN 295 (295)
Q Consensus 278 l~~~~DvlipaA~-~~~I~ 295 (295)
+..+|||||||+. +++||
T Consensus 763 ~~~~vDlliPaggr~~~I~ 781 (1002)
T PTZ00324 763 PYSDADVFVPCGGRPRSVT 781 (1002)
T ss_pred cCCCccEEEECCCCcCccC
Confidence 4789999999998 88886
No 9
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=7.2e-51 Score=339.68 Aligned_cols=130 Identities=52% Similarity=0.889 Sum_probs=124.5
Q ss_pred CCceEEEEEEEEeCCCceeEEEEEEEeecCCCCCCCCCceeecCCCHHHHHHHHHHHHHHHhhhCCCCCCccceeccCCC
Q 036924 31 PFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVDPDEVNALAQLMTWKTAVANIPYGGAKGGIGCNPV 110 (295)
Q Consensus 31 p~r~~~~~~p~~~d~g~~~~~~G~rv~h~~~~Gp~kGGiR~~~~~t~~Ev~~LA~~Mt~K~al~~lp~GGaKGgI~~dP~ 110 (295)
|+|+++++|||++|||+.+.|+|||||||+++||+||||||||++|.+|+++||++||||||+++||||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCHHHHHHHHHHhchh
Q 036924 111 DLSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKF 160 (295)
Q Consensus 111 ~~s~~e~erl~r~f~~~l~~~iG~~~dipapDvgt~~~~m~w~~d~~~~~ 160 (295)
++|..|+|+++|+|+++|.+++++.+|||||||||+++||+||+|+|+++
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~ 130 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRV 130 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhc
Confidence 99999999999999999999999999999999999999999999999864
No 10
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=5e-37 Score=281.80 Aligned_cols=127 Identities=31% Similarity=0.525 Sum_probs=118.5
Q ss_pred cCccccCCCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCC
Q 036924 169 TGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGI 248 (295)
Q Consensus 169 tGkp~~~GG~~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~Gl 248 (295)
||||+.+|||.||.++|||||++++++++++++.+++|+||+||||||||+++|++|.++|+|||+|||++|++|||+||
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHH---HHHHHhcCC-cccCC----CCeeeCCCCccccCceEEecccccCCCC
Q 036924 249 DVPSL---LKHVKEHRG-VKGFS----GGDSIDSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 249 D~~~l---~~~~~~~g~-~~~~~----~~~~~~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
|+++| +++++++++ +.+|+ +++.++++++|+++||||+|||++|+||
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I~ 135 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEVD 135 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccCC
Confidence 99988 666766665 45553 5788899999999999999999999997
No 11
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=99.97 E-value=2.1e-31 Score=241.45 Aligned_cols=120 Identities=55% Similarity=0.876 Sum_probs=116.4
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCCHHHHHH
Q 036924 176 GGSLGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLK 255 (295)
Q Consensus 176 GG~~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD~~~l~~ 255 (295)
|||.+|.++|||||++++++++++++.+++++||+||||||||+++|++|.++|++||+|+|++|++|||+|||+++|++
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~ 80 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA 80 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence 79999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccCCCCeeeCCCCccccCceEEecccccCCCC
Q 036924 256 HVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 256 ~~~~~g~~~~~~~~~~~~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
+++++|++.+|++++.+++++++..+||||||||++|+||
T Consensus 81 ~~~~~g~l~~~~~~~~~~~~~i~~~~~Dvlip~a~~~~i~ 120 (227)
T cd01076 81 YKKEHGSVLGFPGAERITNEELLELDCDILIPAALENQIT 120 (227)
T ss_pred HHHhcCCcccCCCceecCCccceeecccEEEecCccCccC
Confidence 9999999999998888899999999999999999999997
No 12
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=99.97 E-value=8.8e-32 Score=246.39 Aligned_cols=120 Identities=53% Similarity=0.853 Sum_probs=113.9
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHcCCC-CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCCHHHHH
Q 036924 176 GGSLGRDAATGRGVLFAMEALLNEHGKN-IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLL 254 (295)
Q Consensus 176 GG~~~r~~aTg~Gv~~~~~~~l~~~g~~-l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD~~~l~ 254 (295)
|||.+|.++|||||++++++++++++.+ ++|+||+||||||||+++|++|++.|++||+|||++|++|||+|||+++|+
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~ 80 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELL 80 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHH
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHH
Confidence 7999999999999999999999998876 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCC-cccCC-----CCeeeCCC-CccccCceEEecccccCCCC
Q 036924 255 KHVKEHRG-VKGFS-----GGDSIDSN-SILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 255 ~~~~~~g~-~~~~~-----~~~~~~~~-~~l~~~~DvlipaA~~~~I~ 295 (295)
+++++.+. +..|+ +++.++++ ++|+++||||||||++|+||
T Consensus 81 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I~ 128 (244)
T PF00208_consen 81 RIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVIN 128 (244)
T ss_dssp HHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSBS
T ss_pred HHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCeeC
Confidence 99999998 88887 56778774 99999999999999999997
No 13
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=99.96 E-value=1.8e-29 Score=227.47 Aligned_cols=111 Identities=38% Similarity=0.568 Sum_probs=106.1
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCc
Q 036924 184 ATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGV 263 (295)
Q Consensus 184 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~ 263 (295)
||||||++++++++++++.+++|+||+||||||||+++|++|.++|+++|+|||++|++||| |||++++++++++.+++
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l~~~~~~~~~~ 79 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEELINYAVALGGS 79 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHHHHHHHhhCCc
Confidence 79999999999999999989999999999999999999999999999999999999999999 99999999999988888
Q ss_pred ccCCCCeeeCCCCccccCceEEecccccCCCC
Q 036924 264 KGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 264 ~~~~~~~~~~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
..++..+.++++++|..+||||||||++|+||
T Consensus 80 ~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~ 111 (217)
T cd05211 80 ARVKVQDYFPGEAILGLDVDIFAPCALGNVID 111 (217)
T ss_pred cccCcccccCcccceeccccEEeeccccCccC
Confidence 88887677888999999999999999999997
No 14
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.71 E-value=8.1e-17 Score=143.38 Aligned_cols=96 Identities=32% Similarity=0.543 Sum_probs=82.2
Q ss_pred CCchHHHHHHHHHHHHHHc--CCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCCHHHHHHHHHh
Q 036924 182 DAATGRGVLFAMEALLNEH--GKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKE 259 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~--g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~ 259 (295)
+.+|||||+++++++++++ +.+++|++|+|||||+||+++|+.|.+.|++|+ ++|.+ .+++.++++.
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~----------~~~~~~~~~~ 70 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADIN----------EEAVARAAEL 70 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHHHHHHHH
Confidence 4689999999999999975 678999999999999999999999999999999 88875 3455555543
Q ss_pred cCCcccCCCCeeeCCCCccccCceEEecccccCCCC
Q 036924 260 HRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
. +++.++.++++..+|||++|||++++||
T Consensus 71 ~-------g~~~v~~~~l~~~~~Dv~vp~A~~~~I~ 99 (200)
T cd01075 71 F-------GATVVAPEEIYSVDADVFAPCALGGVIN 99 (200)
T ss_pred c-------CCEEEcchhhccccCCEEEecccccccC
Confidence 2 3456677889989999999999999986
No 15
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=99.46 E-value=5.4e-13 Score=142.48 Aligned_cols=216 Identities=22% Similarity=0.230 Sum_probs=147.4
Q ss_pred cCCCHHHHHHhcCCC--ceEEEEEEEEeCCCceeEEEEEEEeecCCCCCCCCCceeecCCC---HHHHHHHHHHHHHHHh
Q 036924 18 LGLDSKLEKSLLIPF--REIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPEVD---PDEVNALAQLMTWKTA 92 (295)
Q Consensus 18 ~~~~~~~~~~l~~p~--r~~~~~~p~~~d~g~~~~~~G~rv~h~~~~Gp~kGGiR~~~~~t---~~Ev~~LA~~Mt~K~a 92 (295)
+.++|..++-|-+|. +++.| . -..|+|++..+..+ ++||+|++ +-. .+|+..|+..+..||
T Consensus 759 FK~dps~i~~lp~P~Py~eIFV---y------g~~vEGvHLRFg~V---ARGGLRws-DR~~D~rtEvlgLvKAQqvKN- 824 (1592)
T COG2902 759 FKFDPSLIDELPYPRPYREIFV---Y------GPEVEGVHLRFGPV---ARGGLRWS-DRNQDFRTEVLGLVKAQQVKN- 824 (1592)
T ss_pred EEeChhhcCCCCCCCcceEEEE---E------cCcceEEEeecccc---cccccccc-ccchhHHHHHHHHHHHHHhcC-
Confidence 356777777666655 33322 2 23568988877775 99999998 444 469999999999999
Q ss_pred hhCCCCCCccceeccCCC--CCCHHH----HHHHHHHHHHHHHhhc-----C----CC----------CcccCCCCCCCH
Q 036924 93 VANIPYGGAKGGIGCNPV--DLSISE----LERLTRVFTQKIHDLI-----G----IH----------ADVPAPDMGTGP 147 (295)
Q Consensus 93 l~~lp~GGaKGgI~~dP~--~~s~~e----~erl~r~f~~~l~~~i-----G----~~----------~dipapDvgt~~ 147 (295)
+.||-+|||||+.+.+. .-+..| -.+-++.|++.|.+++ + |. .-+.|||-||-
T Consensus 825 -avIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Yk~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTA- 902 (1592)
T COG2902 825 -AVIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACYKAFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTA- 902 (1592)
T ss_pred -CcccccCCcceEecccCCCCCchHHHHHhhHHHHHHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCcc-
Confidence 77899999999998652 223333 2234667777765432 1 10 01467888883
Q ss_pred HHHHHHHHHhchhcCCC--CccccCccccCCCC-CCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC----cHHHHH
Q 036924 148 QTMAWILDEYSKFHGHS--PAVVTGKPIDLGGS-LGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF----GNVGSW 220 (295)
Q Consensus 148 ~~m~w~~d~~~~~~g~~--~~~~tGkp~~~GG~-~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf----GnVG~~ 220 (295)
.--+|--. .++-+|++ .++.||++ +|. +.-...|++|++.+++...+.+|+++....+-++|- |.|+.+
T Consensus 903 tFsD~AN~-vA~~~~fwl~DAFaSGgS---~GydHK~mGITarGaweaVkrhFrelg~d~Q~~~fTvvgiGdmsGDVfgN 978 (1592)
T COG2902 903 TFSDIANS-VAREYGFWLGDAFASGGS---AGYDHKKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFGN 978 (1592)
T ss_pred cHHHHHHH-HHHHhCCChhhhhhcCCC---CCCCccccccchhhHHHHHHHHHHHhcccCCCCceEEEeeCCCCcccccc
Confidence 44444332 23334432 34445544 333 445689999999999999999999977767777774 677777
Q ss_pred HHHHHHHCCCEEEEEecCCceEECC-CCCCHHHHHH
Q 036924 221 AARLIGEKGGKIVAVSDISGAIKNS-KGIDVPSLLK 255 (295)
Q Consensus 221 ~a~~L~~~G~kvVaVsD~~G~iy~~-~GlD~~~l~~ 255 (295)
= .|..+-.+.||+-|.++-.+|| -++|...+.+
T Consensus 979 g--MLLS~~irLiAAfDhrhIFiDP~pd~a~S~~eR 1012 (1592)
T COG2902 979 G--MLLSKHIRLIAAFDHRHIFIDPNPDLAVSFAER 1012 (1592)
T ss_pred c--eeccccceeeEEecCCceeeCCCCCccccHHHH
Confidence 4 4555567899999999999999 5888766554
No 16
>PRK08374 homoserine dehydrogenase; Provisional
Probab=99.36 E-value=8e-13 Score=126.49 Aligned_cols=85 Identities=25% Similarity=0.376 Sum_probs=73.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHH--------CC--CEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCC---CeeeC
Q 036924 207 QRFVIQGFGNVGSWAARLIGE--------KG--GKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSG---GDSID 273 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~--------~G--~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~---~~~~~ 273 (295)
.+|+||||||||++++++|.+ .| ++|++|+|+++++|||+|+|++++++++++++.+..|+. ...++
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 689999999999999999987 45 899999999999999999999999999999888877752 22346
Q ss_pred CCCcc-ccCceEEeccccc
Q 036924 274 SNSIL-IEDCDVLIPAALG 291 (295)
Q Consensus 274 ~~~~l-~~~~DvlipaA~~ 291 (295)
.++++ +.+|||+|+|+-.
T Consensus 83 ~~ell~~~~~DVvVd~t~~ 101 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTND 101 (336)
T ss_pred HHHHHhcCCCCEEEECCCc
Confidence 66787 5899999999843
No 17
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=99.34 E-value=1.4e-11 Score=135.57 Aligned_cols=216 Identities=22% Similarity=0.251 Sum_probs=150.8
Q ss_pred cCCCHHHHHHhcCCCceEEEEEEEEeCCCceeEEEEEEEeecCCCCCCCCCceeecC--CCHHHHHHHHHHHHHHHhhhC
Q 036924 18 LGLDSKLEKSLLIPFREIKVECTIPKDDGTLASFVGFRIQHDNARGPMKGGIRYHPE--VDPDEVNALAQLMTWKTAVAN 95 (295)
Q Consensus 18 ~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~G~rv~h~~~~Gp~kGGiR~~~~--~t~~Ev~~LA~~Mt~K~al~~ 95 (295)
+.++|..+.-+-.|....++. |. ..-|+|++..+... ++||||++-. .-..||..|+.+|..|| +.
T Consensus 697 fKldp~~l~~~p~P~P~~eif--V~-----s~~~eGvHLR~g~V---ARGGlRwSdR~eDfRtEvlgL~kaQ~vKN--av 764 (1528)
T PF05088_consen 697 FKLDPSFLPDLPEPRPYFEIF--VY-----SPRFEGVHLRFGDV---ARGGLRWSDRPEDFRTEVLGLVKAQQVKN--AV 764 (1528)
T ss_pred EEEcHHHcCCCCCCCCcEEEE--EE-----CCceEEEEcccccc---ccCcccccCCHHHHHHHHHHHHHHHHhcC--Cc
Confidence 356777777777666555553 22 24679988888886 9999999632 22479999999999999 78
Q ss_pred CCCCCccceeccCCCCC--CHH----HHHHHHHHHHHHHHhhcC---------CC---------C-cccCCCCCCCHHHH
Q 036924 96 IPYGGAKGGIGCNPVDL--SIS----ELERLTRVFTQKIHDLIG---------IH---------A-DVPAPDMGTGPQTM 150 (295)
Q Consensus 96 lp~GGaKGgI~~dP~~~--s~~----e~erl~r~f~~~l~~~iG---------~~---------~-dipapDvgt~~~~m 150 (295)
||-+|||||+.++.... +.. |-...++.|++.|.++.. |. . -+-|.|=||- .-.
T Consensus 765 Ivp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGTA-tfS 843 (1528)
T PF05088_consen 765 IVPVGSKGGFVVKQLPDPADRDAWQAEGIACYKTFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGTA-TFS 843 (1528)
T ss_pred ccCCCCceeEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCcc-hHH
Confidence 99999999998864432 222 334456778877766521 11 0 0467788882 222
Q ss_pred HHHHHHhchhcCCCCccccCccccCCCCCCC----CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHH--HHH
Q 036924 151 AWILDEYSKFHGHSPAVVTGKPIDLGGSLGR----DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWA--ARL 224 (295)
Q Consensus 151 ~w~~d~~~~~~g~~~~~~tGkp~~~GG~~~r----~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~--a~~ 224 (295)
+ ++.+.+.-+ |+.-|.-...|||.|. .+.|++|.+.+++-.++.+|+++..-.+.|+|-|..+.-+ =-.
T Consensus 844 D-~AN~ia~~~----gfWLgDAFASGGS~GYDHK~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsGDVFGNGM 918 (1528)
T PF05088_consen 844 D-IANEIAAEY----GFWLGDAFASGGSAGYDHKKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSGDVFGNGM 918 (1528)
T ss_pred H-HHHHHHHHc----CCCcchhhhcCCcCCCCchhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCccccccch
Confidence 2 233333333 4567788888999764 4799999999999999999999887778888865443222 024
Q ss_pred HHHCCCEEEEEecCCceEECCCCCCHHH
Q 036924 225 IGEKGGKIVAVSDISGAIKNSKGIDVPS 252 (295)
Q Consensus 225 L~~~G~kvVaVsD~~G~iy~~~GlD~~~ 252 (295)
|..+-.|+||.-|...-..||+= |++.
T Consensus 919 LlS~~irLvaAF~H~hIFiDP~P-D~~~ 945 (1528)
T PF05088_consen 919 LLSRHIRLVAAFNHRHIFIDPDP-DPAA 945 (1528)
T ss_pred hcccceeEEEecCcceeecCcCC-Chhh
Confidence 55667999999999998899985 5443
No 18
>PRK06392 homoserine dehydrogenase; Provisional
Probab=99.34 E-value=1.7e-12 Score=123.77 Aligned_cols=83 Identities=25% Similarity=0.372 Sum_probs=69.5
Q ss_pred CEEEEEcCcHHHHHHHHHHHH--------CCCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCcc
Q 036924 207 QRFVIQGFGNVGSWAARLIGE--------KGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSIL 278 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~--------~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l 278 (295)
+||+||||||||+++++.|.+ .+++||+|+|+++++|+++|||++++++++++ |.+..++ .+.++.++++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~-~~~~~~~~ll 78 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEID-YEKIKFDEIF 78 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCC-CCcCCHHHHh
Confidence 489999999999999999987 36899999999999999999999999998876 7665553 1223456677
Q ss_pred ccCceEEeccccc
Q 036924 279 IEDCDVLIPAALG 291 (295)
Q Consensus 279 ~~~~DvlipaA~~ 291 (295)
..++||+|+|+..
T Consensus 79 ~~~~DVvVE~t~~ 91 (326)
T PRK06392 79 EIKPDVIVDVTPA 91 (326)
T ss_pred cCCCCEEEECCCC
Confidence 7899999999953
No 19
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.88 E-value=3.8e-09 Score=101.30 Aligned_cols=85 Identities=31% Similarity=0.492 Sum_probs=70.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHC----------CCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCe-eeCCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEK----------GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGD-SIDSN 275 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~----------G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~-~~~~~ 275 (295)
.+|+|+|||+||+.+++.|.+. +++|++|+|+++.+|+++|+|++++.++.++.+.+..|++.. ..+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999999765 689999999999999999999999999888777766665332 23456
Q ss_pred Ccc-ccCceEEeccccc
Q 036924 276 SIL-IEDCDVLIPAALG 291 (295)
Q Consensus 276 ~~l-~~~~DvlipaA~~ 291 (295)
+++ ..++||+|+|+..
T Consensus 83 ell~~~~~DvVvd~T~s 99 (341)
T PRK06270 83 EVIRSVDADVVVEATPT 99 (341)
T ss_pred HHhhccCCCEEEECCcC
Confidence 666 5689999999865
No 20
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.56 E-value=5.3e-07 Score=69.52 Aligned_cols=55 Identities=33% Similarity=0.512 Sum_probs=49.5
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 184 ATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 184 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+||+|++..+++..+..+.++++++++|+|+|++|+.+++.|.+.+.+.|.++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4899999999999888888899999999999999999999999986666668888
No 21
>PLN02700 homoserine dehydrogenase family protein
Probab=98.31 E-value=7.4e-07 Score=86.68 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=60.8
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHC-------C--CEEEEEecCCceEECCC----CCCHHHHHH---HHHhcCCcccCCC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEK-------G--GKIVAVSDISGAIKNSK----GIDVPSLLK---HVKEHRGVKGFSG 268 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~-------G--~kvVaVsD~~G~iy~~~----GlD~~~l~~---~~~~~g~~~~~~~ 268 (295)
+-.+|+|.||||||+.+++.|.++ | .+|++|+|+++.++|++ |||++.+.+ .+.+...+..++.
T Consensus 2 ~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~~ 81 (377)
T PLN02700 2 KKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALGA 81 (377)
T ss_pred cEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhhh
Confidence 346899999999999999998643 2 68999999999999975 999888776 3344344443311
Q ss_pred C--------------eeeCCCCcc-ccCceEEeccccc
Q 036924 269 G--------------DSIDSNSIL-IEDCDVLIPAALG 291 (295)
Q Consensus 269 ~--------------~~~~~~~~l-~~~~DvlipaA~~ 291 (295)
. +.++..+.+ ..+.+|+|+|+-.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ViVD~T~s 119 (377)
T PLN02700 82 LAGGCQVFNNSELSRKVIDIATLLGKSTGLVVVDCSAS 119 (377)
T ss_pred ccccccccccccccchhhhHHHHhhccCCCEEEECCCC
Confidence 0 011222223 4567999999864
No 22
>PRK06813 homoserine dehydrogenase; Validated
Probab=98.31 E-value=8.1e-07 Score=85.64 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=59.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHC----------CCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEK----------GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNS 276 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~----------G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~ 276 (295)
.+|+|.|||+||+.+++.|.++ ..+|++|+|+++.+++++|+|++.+++..+....+..|. ....++
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~---~~~~~~ 79 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYI---EHHPEE 79 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhh---ccChHH
Confidence 6899999999999999999754 378999999999999999999988666432211111111 112223
Q ss_pred cc--ccCceEEecccccC
Q 036924 277 IL--IEDCDVLIPAALGG 292 (295)
Q Consensus 277 ~l--~~~~DvlipaA~~~ 292 (295)
++ ..+.||+|+|+-.+
T Consensus 80 ~~~~~~~~dVvVe~T~s~ 97 (346)
T PRK06813 80 RATDNISGTVLVESTVTN 97 (346)
T ss_pred HhcCCCCCCEEEECCCCc
Confidence 33 34789999997543
No 23
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.87 E-value=1.7e-05 Score=75.98 Aligned_cols=78 Identities=24% Similarity=0.381 Sum_probs=56.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHC----------CCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEK----------GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDS 274 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~----------G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~ 274 (295)
+-.+|+|.|||+||+.++++|.++ ..+|++|+|+++..+. ++|...+ +.+...+... .+.
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~--~~~~~~~-~~~~~~~~~~-------~~~ 71 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR--DLDLLNA-EVWTTDGALS-------LGD 71 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc--cccccch-hhheeccccc-------ccH
Confidence 457899999999999999999875 3799999999998775 4554444 3333333221 122
Q ss_pred CCccccCceEEecccccC
Q 036924 275 NSILIEDCDVLIPAALGG 292 (295)
Q Consensus 275 ~~~l~~~~DvlipaA~~~ 292 (295)
+.+...+.||++|+...+
T Consensus 72 ~~~~~~~~dvvve~~~~d 89 (333)
T COG0460 72 EVLLDEDIDVVVELVGGD 89 (333)
T ss_pred hhhccccCCEEEecCccc
Confidence 334578999999998764
No 24
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=97.82 E-value=3.3e-05 Score=82.22 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=61.3
Q ss_pred cCCCCCCCEEEEEcCcHHHHHHHHHHHHC---------CCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCe
Q 036924 200 HGKNIAGQRFVIQGFGNVGSWAARLIGEK---------GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGD 270 (295)
Q Consensus 200 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~---------G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~ 270 (295)
+-.+-+..+|+|.|||+||+.+++.|.++ ..+|++|+|+++.+++|+|+|.+.+.+..+... ..+ ...
T Consensus 459 f~~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~--~~~-~~~ 535 (819)
T PRK09436 459 FFLSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAG--EPF-DLD 535 (819)
T ss_pred HhcccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhcc--CCC-CHH
Confidence 33344779999999999999999999753 368999999999999999999987665444321 111 111
Q ss_pred eeCCCCcc---ccCceEEeccccc
Q 036924 271 SIDSNSIL---IEDCDVLIPAALG 291 (295)
Q Consensus 271 ~~~~~~~l---~~~~DvlipaA~~ 291 (295)
.+ .+++ +.+.||+|+|+-.
T Consensus 536 ~~--~~~~~~~~~~~~vvvd~t~~ 557 (819)
T PRK09436 536 RL--IRLVKEYHLLNPVIVDCTSS 557 (819)
T ss_pred HH--HHHHhhcCCCCCEEEECCCC
Confidence 00 1122 3467999999865
No 25
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.75 E-value=9.4e-05 Score=64.14 Aligned_cols=52 Identities=27% Similarity=0.502 Sum_probs=35.6
Q ss_pred HHHHHHHHH-HHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 187 RGVLFAMEA-LLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 187 ~Gv~~~~~~-~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
||+-+++-. +++..+..+.|+++.|.|||.||+.+|+.|...|++|+ |+|.+
T Consensus 3 yG~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~-V~e~D 55 (162)
T PF00670_consen 3 YGTGQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVT-VTEID 55 (162)
T ss_dssp HHHHHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEE-EE-SS
T ss_pred cccchhHHHHHHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEE-EEECC
Confidence 344444433 33456788999999999999999999999999999997 99885
No 26
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=97.73 E-value=5.1e-05 Score=80.64 Aligned_cols=57 Identities=26% Similarity=0.351 Sum_probs=48.3
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHC--------C--CEEEEEecCCceEECCCCCCHHHHHHHHHh
Q 036924 203 NIAGQRFVIQGFGNVGSWAARLIGEK--------G--GKIVAVSDISGAIKNSKGIDVPSLLKHVKE 259 (295)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~--------G--~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~ 259 (295)
+.+..+|+|.|||+||+.+++.|.++ | .+|++|+|+++.+++++|+|...+.+..+.
T Consensus 455 ~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~ 521 (810)
T PRK09466 455 AEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDD 521 (810)
T ss_pred cCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHh
Confidence 44668999999999999999999753 3 789999999999999999998877665443
No 27
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.47 E-value=0.00045 Score=68.45 Aligned_cols=56 Identities=25% Similarity=0.484 Sum_probs=44.1
Q ss_pred CCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 180 GRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 180 ~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++.-.||.|++.+++.+ .+..+.|++|+|.|+|++|+.+|+.|...|++|+ |+|.+
T Consensus 189 dn~~gt~~s~~~ai~ra---t~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~Vi-V~d~d 244 (425)
T PRK05476 189 DNRYGTGESLLDGIKRA---TNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVI-VTEVD 244 (425)
T ss_pred cccHHHHhhhHHHHHHh---ccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEcCC
Confidence 34455777776555433 2566899999999999999999999999999987 77764
No 28
>PRK13529 malate dehydrogenase; Provisional
Probab=97.37 E-value=0.0062 Score=62.14 Aligned_cols=165 Identities=19% Similarity=0.211 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCHHHHHHHHHHhchhcCCCCccccCccccCCCCCCCCCchHHHHHH
Q 036924 112 LSISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLF 191 (295)
Q Consensus 112 ~s~~e~erl~r~f~~~l~~~iG~~~dipapDvgt~~~~m~w~~d~~~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~ 191 (295)
.+..|-..+...|+++++... |..-|==.|++....- -+.+.|+.. -|+. .+--.-||-=+..
T Consensus 218 ~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~~af--~iL~ryr~~----------i~~F----nDDiQGTaaV~LA 280 (563)
T PRK13529 218 IRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNAR--RILERYRDE----------ICTF----NDDIQGTGAVTLA 280 (563)
T ss_pred CchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCchHH--HHHHHhccC----------CCee----ccccchHHHHHHH
Confidence 345667788999999998877 5544445788764332 456777642 1221 1223457777778
Q ss_pred HHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHH----CCC-------EEEEEecCCceEECCCCCCHHHHH-HHHHh
Q 036924 192 AMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGE----KGG-------KIVAVSDISGAIKNSKGIDVPSLL-KHVKE 259 (295)
Q Consensus 192 ~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~G~-------kvVaVsD~~G~iy~~~GlD~~~l~-~~~~~ 259 (295)
++..+++..|.++++.||++.|.|..|.++|++|.+ .|. ++. +.|++|-++.... |+..-. .+.+.
T Consensus 281 gll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~-~vD~~GLl~~~r~-~l~~~k~~fa~~ 358 (563)
T PRK13529 281 GLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFF-MVDRQGLLTDDMP-DLLDFQKPYARK 358 (563)
T ss_pred HHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCCCeEeCCCC-cchHHHHHHhhh
Confidence 888999988999999999999999999999999986 686 554 8999999998764 222211 22222
Q ss_pred cCCcccCCCC-eeeCCCCcc-ccCceEEecccc-cCCCC
Q 036924 260 HRGVKGFSGG-DSIDSNSIL-IEDCDVLIPAAL-GGVIN 295 (295)
Q Consensus 260 ~g~~~~~~~~-~~~~~~~~l-~~~~DvlipaA~-~~~I~ 295 (295)
...+..++.. ...+-.|++ ..+.||||=++- .|++|
T Consensus 359 ~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft 397 (563)
T PRK13529 359 REELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFT 397 (563)
T ss_pred cccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCC
Confidence 1112111110 011223444 567899998886 45554
No 29
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.35 E-value=0.00071 Score=66.85 Aligned_cols=52 Identities=21% Similarity=0.511 Sum_probs=42.5
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 184 ATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 184 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-||.+++ +.+++..+..+.|++|+|+|+|.+|+.+++.+...|++|+ |+|.+
T Consensus 183 g~g~s~~---~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d~d 234 (413)
T cd00401 183 GCRESLI---DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTEVD 234 (413)
T ss_pred hhchhhH---HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEECC
Confidence 3555543 5566666888999999999999999999999999999987 57664
No 30
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.31 E-value=0.0011 Score=62.35 Aligned_cols=54 Identities=24% Similarity=0.411 Sum_probs=43.8
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+|+.+.+ ..+++..+.++.|++|+|+|+|.+|+.+|+.|...|++|+ |.|++
T Consensus 130 ~~~~Ae~ai---~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~-v~~R~ 183 (287)
T TIGR02853 130 SIPTAEGAI---MMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVF-VGARS 183 (287)
T ss_pred cHhHHHHHH---HHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 456776653 4555666778999999999999999999999999999887 66664
No 31
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.25 E-value=0.0034 Score=52.38 Aligned_cols=49 Identities=20% Similarity=0.373 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 191 FAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 191 ~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++++.++++.+.++++++|.|.|.|++|+.+++.|.+.|...|.+.|.+
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3455666666777889999999999999999999999874444477764
No 32
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.21 E-value=0.00035 Score=56.41 Aligned_cols=63 Identities=24% Similarity=0.350 Sum_probs=40.5
Q ss_pred cCcHHHHHHHHHHHHC----CCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCe-eeCCCCccc-cCceEEe
Q 036924 213 GFGNVGSWAARLIGEK----GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGD-SIDSNSILI-EDCDVLI 286 (295)
Q Consensus 213 GfGnVG~~~a~~L~~~----G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~-~~~~~~~l~-~~~Dvli 286 (295)
|||+||+.+++.|.++ +++|++|+|++ .+.+++ ..... +... ..+.+++++ .++||+|
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~------~~~~~---------~~~~~~~~~~~~~~~~~~dvvV 64 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD------WAASF---------PDEAFTTDLEELIDDPDIDVVV 64 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT------HHHHH---------THSCEESSHHHHHTHTT-SEEE
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh------hhhhc---------ccccccCCHHHHhcCcCCCEEE
Confidence 8999999999999876 79999999999 777665 11100 1111 223345664 6899999
Q ss_pred ccccc
Q 036924 287 PAALG 291 (295)
Q Consensus 287 paA~~ 291 (295)
+|+-.
T Consensus 65 E~t~~ 69 (117)
T PF03447_consen 65 ECTSS 69 (117)
T ss_dssp E-SSC
T ss_pred ECCCc
Confidence 99643
No 33
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.18 E-value=0.0011 Score=65.32 Aligned_cols=52 Identities=25% Similarity=0.505 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 184 ATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 184 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.||.+++ +.+++..+..+.|++|+|+|+|++|+.+|+.+...|++|+ |.|.+
T Consensus 176 g~g~s~~---~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~Vi-V~d~d 227 (406)
T TIGR00936 176 GTGQSTI---DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVI-VTEVD 227 (406)
T ss_pred ccchhHH---HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEE-EEeCC
Confidence 4555543 3344455777899999999999999999999999999987 56553
No 34
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=97.16 E-value=0.012 Score=60.43 Aligned_cols=158 Identities=21% Similarity=0.233 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCHHHHHHHHHHhchhcCCCCccccCccccCCCCCCCCCchHHHHHHH
Q 036924 113 SISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFA 192 (295)
Q Consensus 113 s~~e~erl~r~f~~~l~~~iG~~~dipapDvgt~~~~m~w~~d~~~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~ 192 (295)
+..|-..+...|+++++.-.||..-|-=.|++..... -+.+.|+.. -|+. .+--.-||-=+..+
T Consensus 244 ~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~af--~iL~ryr~~----------i~~F----nDDiQGTaaV~lAg 307 (581)
T PLN03129 244 TGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAF--RLLQRYRTT----------HLCF----NDDIQGTAAVALAG 307 (581)
T ss_pred chhhHHHhHHHHHHHHHHHhCCccEEehhhcCCccHH--HHHHHhccC----------CCEe----ccccchHHHHHHHH
Confidence 4556677899999999998888755556788764333 355777521 1221 12234577777788
Q ss_pred HHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEecCCceEECCCCCCHHHHH-HHHHh
Q 036924 193 MEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGE-----KGG-------KIVAVSDISGAIKNSKGIDVPSLL-KHVKE 259 (295)
Q Consensus 193 ~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-----~G~-------kvVaVsD~~G~iy~~~GlD~~~l~-~~~~~ 259 (295)
+..+++..|.++++.||++.|.|..|.++|++|.+ .|. ++ -+.|++|-+++...-++..-. .+.+.
T Consensus 308 ll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i-~~vD~~GLi~~~r~~~l~~~k~~fa~~ 386 (581)
T PLN03129 308 LLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRI-WLVDSKGLVTKSRKDSLQPFKKPFAHD 386 (581)
T ss_pred HHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcE-EEEcCCCeEeCCCCccChHHHHHHHhh
Confidence 88999988999999999999999999999999986 475 55 489999999986642122211 22221
Q ss_pred cCCcccCCCCeeeCCCCcc-ccCceEEecccc-cCCCC
Q 036924 260 HRGVKGFSGGDSIDSNSIL-IEDCDVLIPAAL-GGVIN 295 (295)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~l-~~~~DvlipaA~-~~~I~ 295 (295)
. + ...+-.|++ .++.||||=++- .|++|
T Consensus 387 ~------~--~~~~L~e~v~~vkptvLIG~S~~~g~Ft 416 (581)
T PLN03129 387 H------E--PGASLLEAVKAIKPTVLIGLSGVGGTFT 416 (581)
T ss_pred c------c--cCCCHHHHHhccCCCEEEEecCCCCCCC
Confidence 1 0 111233444 568899998875 46554
No 35
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=97.13 E-value=0.0036 Score=58.83 Aligned_cols=104 Identities=22% Similarity=0.243 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHC----CC------EEEEEecCCceEECCCC-CCHHHH
Q 036924 185 TGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEK----GG------KIVAVSDISGAIKNSKG-IDVPSL 253 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----G~------kvVaVsD~~G~iy~~~G-lD~~~l 253 (295)
||-=+..++..+++..|.++++.||+|.|.|..|.++|++|.+. |+ +=+-+.|++|-+++... ++. ..
T Consensus 4 Ta~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~-~~ 82 (279)
T cd05312 4 TAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTP-FK 82 (279)
T ss_pred HHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchH-HH
Confidence 66666778888898889999999999999999999999999875 87 33458999999998654 322 22
Q ss_pred HHHHHhcCCcccCCCCeeeCCCCcc-ccCceEEecccc-cCCCC
Q 036924 254 LKHVKEHRGVKGFSGGDSIDSNSIL-IEDCDVLIPAAL-GGVIN 295 (295)
Q Consensus 254 ~~~~~~~g~~~~~~~~~~~~~~~~l-~~~~DvlipaA~-~~~I~ 295 (295)
..+.++... ....+-.|++ .+++||||=++- .|++|
T Consensus 83 ~~~a~~~~~------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft 120 (279)
T cd05312 83 KPFARKDEE------KEGKSLLEVVKAVKPTVLIGLSGVGGAFT 120 (279)
T ss_pred HHHHhhcCc------ccCCCHHHHHHhcCCCEEEEeCCCCCCCC
Confidence 223322110 0112334455 569999998884 56654
No 36
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.12 E-value=0.0033 Score=57.12 Aligned_cols=103 Identities=27% Similarity=0.295 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCE--EEEEecCCceEECCCC--CCHHHHHHHHHhc
Q 036924 185 TGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGK--IVAVSDISGAIKNSKG--IDVPSLLKHVKEH 260 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~k--vVaVsD~~G~iy~~~G--lD~~~l~~~~~~~ 260 (295)
|+-=+..++..+++..+.+++++||.|.|.|..|+.+|+.|.+.|++ -+-|.|++|-++.... |.. ...++.+..
T Consensus 4 t~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~-~~~~la~~~ 82 (226)
T cd05311 4 TAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNP-DKNEIAKET 82 (226)
T ss_pred hHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhH-HHHHHHHHh
Confidence 44444556667777778889999999999999999999999999987 5669999987765543 221 112222221
Q ss_pred CCcccCCCCeeeCCCCccccCceEEecccccCCC
Q 036924 261 RGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVI 294 (295)
Q Consensus 261 g~~~~~~~~~~~~~~~~l~~~~DvlipaA~~~~I 294 (295)
+. ... ..+-.+.+. ++||+|-|+..+.+
T Consensus 83 ~~----~~~-~~~l~~~l~-~~dvlIgaT~~G~~ 110 (226)
T cd05311 83 NP----EKT-GGTLKEALK-GADVFIGVSRPGVV 110 (226)
T ss_pred cc----Ccc-cCCHHHHHh-cCCEEEeCCCCCCC
Confidence 10 000 011112332 58999998865554
No 37
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.10 E-value=0.0046 Score=58.19 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=43.6
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcH-HHHHHHHHHHHCCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGN-VGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
...|-+|+... +++.+.+++|++|+|+|.|+ ||+.++..|.++|+.| .|++++
T Consensus 139 ~p~T~~gii~~----L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatV-tv~~~~ 192 (283)
T PRK14192 139 GSATPAGIMRL----LKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATV-TICHSR 192 (283)
T ss_pred cCCcHHHHHHH----HHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEE-EEEeCC
Confidence 46777776554 44578899999999999998 9999999999999955 488874
No 38
>PRK12861 malic enzyme; Reviewed
Probab=96.98 E-value=0.011 Score=62.57 Aligned_cols=148 Identities=19% Similarity=0.214 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHhhcCCCCcccCCCCCCCHHHHHHHHHHhchhcCCCCccccCccccCCCCCCCCCchHHHHHHHHHHHH
Q 036924 118 ERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAMEALL 197 (295)
Q Consensus 118 erl~r~f~~~l~~~iG~~~dipapDvgt~~~~m~w~~d~~~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~l 197 (295)
+.+. .|++++.+-.|. |-=.|+...... -+.++|+... .-|+. ++--.-||-=+..++..++
T Consensus 119 d~~v-~~v~a~~~~fg~---i~lED~~~p~~f--~il~~~~~~~--------~ipvf----~DD~qGTa~v~lA~llnal 180 (764)
T PRK12861 119 DKLV-DIIAGLEPTFGG---INLEDIKAPECF--TVERKLRERM--------KIPVF----HDDQHGTAITVSAAFINGL 180 (764)
T ss_pred HHHH-HHHHHHHhhcCC---ceeeeccCchHH--HHHHHHHhcC--------CCCee----ccccchHHHHHHHHHHHHH
Confidence 5566 888888877654 455677654332 4556676421 12332 1223447777778888899
Q ss_pred HHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCC---EEEEEecCCceEECCCC--CCHHHHHHHHHhcCCcccCCCCeee
Q 036924 198 NEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGG---KIVAVSDISGAIKNSKG--IDVPSLLKHVKEHRGVKGFSGGDSI 272 (295)
Q Consensus 198 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~---kvVaVsD~~G~iy~~~G--lD~~~l~~~~~~~g~~~~~~~~~~~ 272 (295)
+..|.++++.||++.|.|..|.+++++|.+.|. +|+ ++|++|-+|.... ++..+. .+.+.+ + ..
T Consensus 181 ~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~-~~D~~Gli~~~r~~~l~~~k~-~~a~~~----~-----~~ 249 (764)
T PRK12861 181 KVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIW-VTDIEGVVYRGRTTLMDPDKE-RFAQET----D-----AR 249 (764)
T ss_pred HHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEE-EEcCCCeeeCCCcccCCHHHH-HHHhhc----C-----CC
Confidence 988999999999999999999999999999998 565 9999999997653 443222 222221 0 01
Q ss_pred CCCCccccCceEEecccccCCCC
Q 036924 273 DSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 273 ~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
+-.|.+.. +||||=++-.|++|
T Consensus 250 ~L~eai~~-advliG~S~~g~ft 271 (764)
T PRK12861 250 TLAEVIGG-ADVFLGLSAGGVLK 271 (764)
T ss_pred CHHHHHhc-CCEEEEcCCCCCCC
Confidence 22344443 69999888777765
No 39
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.91 E-value=0.0078 Score=63.65 Aligned_cols=102 Identities=22% Similarity=0.268 Sum_probs=75.3
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCC---EEEEEecCCceEECCC--CCCHHHHHHH
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGG---KIVAVSDISGAIKNSK--GIDVPSLLKH 256 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~---kvVaVsD~~G~iy~~~--GlD~~~l~~~ 256 (295)
-.-||-=+..++..+++..|.++++.||++.|.|..|.+++++|...|. +|+ +.|++|.+|... +++..+. .+
T Consensus 161 ~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~~~~~k~-~~ 238 (752)
T PRK07232 161 QHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENII-VCDSKGVIYKGRTEGMDEWKA-AY 238 (752)
T ss_pred cchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEE-EEcCCCeecCCCcccccHHHH-HH
Confidence 3457777888888999988999999999999999999999999999998 565 999999999865 3443222 11
Q ss_pred HHhcCCcccCCCCeeeCCCCccccCceEEecccccCCCC
Q 036924 257 VKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 257 ~~~~g~~~~~~~~~~~~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
.+. .+ ..+-.|.+.. +||||=++-.|++|
T Consensus 239 a~~----~~-----~~~l~~~i~~-~~v~iG~s~~g~~~ 267 (752)
T PRK07232 239 AVD----TD-----ARTLAEAIEG-ADVFLGLSAAGVLT 267 (752)
T ss_pred hcc----CC-----CCCHHHHHcC-CCEEEEcCCCCCCC
Confidence 111 00 0123445544 89999888877765
No 40
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=96.88 E-value=0.029 Score=57.34 Aligned_cols=161 Identities=17% Similarity=0.150 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCHHHHHHHHHHhchhcCCCCccccCccccCCCCCCCCCchHHHHHHH
Q 036924 113 SISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFA 192 (295)
Q Consensus 113 s~~e~erl~r~f~~~l~~~iG~~~dipapDvgt~~~~m~w~~d~~~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~ 192 (295)
+..|-..+...|+++++... |..-|==.|++..... -+.+.|+... |+. .+--.-||-=+..+
T Consensus 221 ~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~naf--~iL~kyr~~i----------~~F----nDDiQGTaaV~lAg 283 (559)
T PTZ00317 221 DDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNHCF--DLLERYQNKY----------RCF----NDDIQGTGAVIAAG 283 (559)
T ss_pred ChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCccHH--HHHHHhccCC----------CEe----cccchhHHHHHHHH
Confidence 55677789999999998877 5544555788764332 4567776421 211 12234577777778
Q ss_pred HHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHH----CCC-------EEEEEecCCceEECCCC--CCHHHHHHHHHh
Q 036924 193 MEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGE----KGG-------KIVAVSDISGAIKNSKG--IDVPSLLKHVKE 259 (295)
Q Consensus 193 ~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~----~G~-------kvVaVsD~~G~iy~~~G--lD~~~l~~~~~~ 259 (295)
+..+++..|.++++.||++.|.|..|.++|++|.+ .|. ++. +.|++|-+++... |+..+. .+.+.
T Consensus 284 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~-~vD~~GLl~~~r~~~l~~~k~-~fa~~ 361 (559)
T PTZ00317 284 FLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFY-LVDSKGLVTTTRGDKLAKHKV-PFART 361 (559)
T ss_pred HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEE-EEcCCCeEeCCCCccccHHHH-HHhcc
Confidence 88899988999999999999999999999999874 686 554 8999999998764 332221 12111
Q ss_pred cCCcccCCCCeeeCCCCcc-ccCceEEecccc-cCCCC
Q 036924 260 HRGVKGFSGGDSIDSNSIL-IEDCDVLIPAAL-GGVIN 295 (295)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~l-~~~~DvlipaA~-~~~I~ 295 (295)
.. .-++....+-.|++ ..+.||||=++- .|++|
T Consensus 362 ~~---~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft 396 (559)
T PTZ00317 362 DI---SAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFT 396 (559)
T ss_pred cc---ccccccCCCHHHHHhccCCCEEEEecCCCCCCC
Confidence 00 00000011223444 667899998875 45554
No 41
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.88 E-value=0.0031 Score=59.57 Aligned_cols=54 Identities=24% Similarity=0.396 Sum_probs=44.8
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+|+.| ++.+++++.+.++.++||.|.|+|.+|+.+++.|...|++|+ ++|.+
T Consensus 131 s~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~-v~~r~ 184 (296)
T PRK08306 131 SIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVT-VGARK 184 (296)
T ss_pred cHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEECC
Confidence 4567777 555677777788899999999999999999999999999877 66665
No 42
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.84 E-value=0.0031 Score=61.67 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 184 ATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 184 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+.+-=+...+..+.+..+..++|+||.|+|+|+||+.+|+.|...|++|++ .|.
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~-~dp 147 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLL-CDP 147 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECC
Confidence 344344444445555667889999999999999999999999999999995 464
No 43
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.82 E-value=0.0017 Score=50.12 Aligned_cols=68 Identities=28% Similarity=0.247 Sum_probs=46.3
Q ss_pred EEEEEcCcHHHHHHHHHHHHCC---CEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCccccCceE
Q 036924 208 RFVIQGFGNVGSWAARLIGEKG---GKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDV 284 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G---~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l~~~~Dv 284 (295)
||+|+|+||+|..+++-|.+.| .+|.-+++.+ .+.+.+.+++.+. .....++.+++. ++||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~----------~~~~~~~~~~~~~-----~~~~~~~~~~~~-~adv 64 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS----------PEKAAELAKEYGV-----QATADDNEEAAQ-EADV 64 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS----------HHHHHHHHHHCTT-----EEESEEHHHHHH-HTSE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc----------HHHHHHHHHhhcc-----ccccCChHHhhc-cCCE
Confidence 6899999999999999999999 8887555664 4566666555431 011113445555 8999
Q ss_pred Eeccccc
Q 036924 285 LIPAALG 291 (295)
Q Consensus 285 lipaA~~ 291 (295)
+|-|-..
T Consensus 65 vilav~p 71 (96)
T PF03807_consen 65 VILAVKP 71 (96)
T ss_dssp EEE-S-G
T ss_pred EEEEECH
Confidence 9987654
No 44
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.82 E-value=0.0034 Score=63.01 Aligned_cols=53 Identities=26% Similarity=0.507 Sum_probs=41.1
Q ss_pred HHHHHHHH-HHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 186 GRGVLFAM-EALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 186 g~Gv~~~~-~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.+|...++ ...++..+..+.|++|+|+|+|+||+.+|+.|...|++|+ ++|.+
T Consensus 233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~Vi-V~e~d 286 (476)
T PTZ00075 233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVV-VTEID 286 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 34443333 4445556778999999999999999999999999999987 66554
No 45
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.82 E-value=0.0059 Score=56.66 Aligned_cols=103 Identities=19% Similarity=0.183 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCE----------EEEEecCCceEECCCC-CCHHHH
Q 036924 185 TGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGK----------IVAVSDISGAIKNSKG-IDVPSL 253 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~k----------vVaVsD~~G~iy~~~G-lD~~~l 253 (295)
||-=+..++..+++..|.++++.||+|.|.|..|.++|++|.+.+.+ =+-+.|++|-+++... ++..+.
T Consensus 4 TaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~ 83 (254)
T cd00762 4 TASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEY 83 (254)
T ss_pred hHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHH
Confidence 56566678888888889999999999999999999999999876643 3348999999998763 433221
Q ss_pred H--HHHHhcCCcccCCCCeeeCCCCcc-ccCceEEecccc-cCCCC
Q 036924 254 L--KHVKEHRGVKGFSGGDSIDSNSIL-IEDCDVLIPAAL-GGVIN 295 (295)
Q Consensus 254 ~--~~~~~~g~~~~~~~~~~~~~~~~l-~~~~DvlipaA~-~~~I~ 295 (295)
. ++.+. .....+-.|.+ ..+.||||=++- .|.+|
T Consensus 84 ~~~~~~~~--------~~~~~~L~eav~~~kptvlIG~S~~~g~ft 121 (254)
T cd00762 84 HLARFANP--------ERESGDLEDAVEAAKPDFLIGVSRVGGAFT 121 (254)
T ss_pred HHHHHcCc--------ccccCCHHHHHHhhCCCEEEEeCCCCCCCC
Confidence 1 11111 11111233444 568999998776 55554
No 46
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.79 E-value=0.0023 Score=55.69 Aligned_cols=36 Identities=25% Similarity=0.547 Sum_probs=31.1
Q ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 201 GKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
+.++.|+||.|.|||++|+.+|+.|...|++|++..
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d 66 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYD 66 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEE
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEec
Confidence 456999999999999999999999999999999544
No 47
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.79 E-value=0.0031 Score=61.77 Aligned_cols=48 Identities=25% Similarity=0.414 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 190 LFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 190 ~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
...+..+.++.+..++|+||.|+|+||||+.+|+.|...|++|++ .|.
T Consensus 100 ~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~-~Dp 147 (381)
T PRK00257 100 LGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLV-CDP 147 (381)
T ss_pred HHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEE-ECC
Confidence 334444455667789999999999999999999999999999984 564
No 48
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.72 E-value=0.0011 Score=55.23 Aligned_cols=34 Identities=32% Similarity=0.417 Sum_probs=29.2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
...||.|+|.|+||.++++.|.+.|+.|++|...
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 3479999999999999999999999999988665
No 49
>PLN02494 adenosylhomocysteinase
Probab=96.63 E-value=0.0041 Score=62.40 Aligned_cols=52 Identities=27% Similarity=0.498 Sum_probs=42.1
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 184 ATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 184 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-||.++ ++.+++..+..+.|++|+|.|+|.+|+.+|+.+...|++|+ |.|.+
T Consensus 235 GtgqS~---~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e~d 286 (477)
T PLN02494 235 GCRHSL---PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTEID 286 (477)
T ss_pred cccccH---HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 455655 45555666777899999999999999999999999999988 56554
No 50
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=96.59 E-value=0.02 Score=56.44 Aligned_cols=103 Identities=23% Similarity=0.282 Sum_probs=73.8
Q ss_pred CchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCE--EEEEecCCceEECCC-CCCHH-HHHHHH-
Q 036924 183 AATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGK--IVAVSDISGAIKNSK-GIDVP-SLLKHV- 257 (295)
Q Consensus 183 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~k--vVaVsD~~G~iy~~~-GlD~~-~l~~~~- 257 (295)
.-||-=+..++..+++..|.+++..||++.|.|..|-+++++|.+.|++ =|-++|++|-+|+.. -++.. ...++.
T Consensus 176 qGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~ 255 (432)
T COG0281 176 QGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAI 255 (432)
T ss_pred cHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHH
Confidence 4577777888889999999999999999999999999999999999985 334999999999644 22111 111111
Q ss_pred HhcCCcccCCCCeeeCCCCccccCceEEecccccCCCC
Q 036924 258 KEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
++++ .+ .. +.-...+||||=|+-.|++|
T Consensus 256 ~~~~---~~------~~-~~~~~~adv~iG~S~~G~~t 283 (432)
T COG0281 256 EDTG---ER------TL-DLALAGADVLIGVSGVGAFT 283 (432)
T ss_pred hhhc---cc------cc-cccccCCCEEEEcCCCCCcC
Confidence 1111 00 10 22456899999998887765
No 51
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.57 E-value=0.0061 Score=57.53 Aligned_cols=53 Identities=19% Similarity=0.347 Sum_probs=45.6
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcH-HHHHHHHHHHHCCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGN-VGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+|..|+. +++++.+.+++|++|+|+|-|+ ||+.+|.+|.++|+.|+ |++++
T Consensus 138 ~PcTp~ai~----~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt-v~~s~ 191 (286)
T PRK14175 138 VPCTPLGIM----EILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT-ILHSR 191 (286)
T ss_pred CCCcHHHHH----HHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCC
Confidence 568887765 4556678899999999999998 99999999999999988 78775
No 52
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.55 E-value=0.014 Score=54.99 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=45.1
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHH-HHHHHHHHHHCCCEEEEEecCC
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNV-GSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnV-G~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-..+|.+|+. ++|++.+++++|++|+|+|.+++ |+.++.+|.++|+.|. +++++
T Consensus 137 ~~PcTp~aii----~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-~~hs~ 191 (285)
T PRK14189 137 FRPCTPYGVM----KMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT-ICHSK 191 (285)
T ss_pred CcCCCHHHHH----HHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EecCC
Confidence 3578877764 56677899999999999999887 9999999999999987 56654
No 53
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.52 E-value=0.0073 Score=50.27 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=52.2
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCcc--c
Q 036924 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSIL--I 279 (295)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l--~ 279 (295)
.++++++|.|.|.|.+|+.++..|.++|++-|.|++++ .+++.+..++.+. ...+.++-+++. .
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt----------~~ra~~l~~~~~~----~~~~~~~~~~~~~~~ 73 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT----------PERAEALAEEFGG----VNIEAIPLEDLEEAL 73 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS----------HHHHHHHHHHHTG----CSEEEEEGGGHCHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC----------HHHHHHHHHHcCc----cccceeeHHHHHHHH
Confidence 36899999999999999999999999999966677764 3455554444211 011223333443 4
Q ss_pred cCceEEecccccC
Q 036924 280 EDCDVLIPAALGG 292 (295)
Q Consensus 280 ~~~DvlipaA~~~ 292 (295)
.++||+|-|+..+
T Consensus 74 ~~~DivI~aT~~~ 86 (135)
T PF01488_consen 74 QEADIVINATPSG 86 (135)
T ss_dssp HTESEEEE-SSTT
T ss_pred hhCCeEEEecCCC
Confidence 5789999887654
No 54
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.50 E-value=0.0031 Score=51.85 Aligned_cols=73 Identities=30% Similarity=0.253 Sum_probs=48.5
Q ss_pred CEEEEEcC-cHHHHHHHHHHHH-CCCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeee-CCCCccccCce
Q 036924 207 QRFVIQGF-GNVGSWAARLIGE-KGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSI-DSNSILIEDCD 283 (295)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~-~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~-~~~~~l~~~~D 283 (295)
+||+|.|+ |++|+.+++.+.+ .+..++++.|++..- ..|-|+.++.... . .+.... +.++++.. ||
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~--~~g~d~g~~~~~~-------~-~~~~v~~~l~~~~~~-~D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSA--KVGKDVGELAGIG-------P-LGVPVTDDLEELLEE-AD 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTST--TTTSBCHHHCTSS-------T--SSBEBS-HHHHTTH--S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcc--cccchhhhhhCcC-------C-cccccchhHHHhccc-CC
Confidence 48999999 9999999999988 899999999997621 2355665543211 0 112222 23455655 99
Q ss_pred EEecccc
Q 036924 284 VLIPAAL 290 (295)
Q Consensus 284 vlipaA~ 290 (295)
|+|+++.
T Consensus 70 VvIDfT~ 76 (124)
T PF01113_consen 70 VVIDFTN 76 (124)
T ss_dssp EEEEES-
T ss_pred EEEEcCC
Confidence 9999874
No 55
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.46 E-value=0.0088 Score=55.56 Aligned_cols=106 Identities=25% Similarity=0.260 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHC----CC------EEEEEecCCceEECCCCCCHHHHH
Q 036924 185 TGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEK----GG------KIVAVSDISGAIKNSKGIDVPSLL 254 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~----G~------kvVaVsD~~G~iy~~~GlD~~~l~ 254 (295)
||-=+..++..+++..|.++++.||++.|.|..|-++|++|.+. |. +=+-+.|++|-+++.. =|+..-.
T Consensus 4 TaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~ 82 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHK 82 (255)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHH
T ss_pred hHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhh
Confidence 55556667788888889999999999999999999999999877 87 4445999999999766 3332222
Q ss_pred HHHHhcCCcccCCCCeeeCCCCcc-ccCceEEeccc-ccCCCC
Q 036924 255 KHVKEHRGVKGFSGGDSIDSNSIL-IEDCDVLIPAA-LGGVIN 295 (295)
Q Consensus 255 ~~~~~~g~~~~~~~~~~~~~~~~l-~~~~DvlipaA-~~~~I~ 295 (295)
....+... +.....+-.|.+ ..+.||||=++ ..+.+|
T Consensus 83 ~~~a~~~~----~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft 121 (255)
T PF03949_consen 83 KPFARKTN----PEKDWGSLLEAVKGAKPTVLIGLSGQGGAFT 121 (255)
T ss_dssp HHHHBSSS----TTT--SSHHHHHHCH--SEEEECSSSTTSS-
T ss_pred hhhhccCc----ccccccCHHHHHHhcCCCEEEEecCCCCcCC
Confidence 21111100 011112223444 66779999887 555543
No 56
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.38 E-value=0.0099 Score=55.44 Aligned_cols=73 Identities=18% Similarity=0.223 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHH--CCCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCccccC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGE--KGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIED 281 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~--~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l~~~ 281 (295)
++.+||+|+|+|++|+..++.|.+ .++++++|+|.+ .++..+..++.+... ..-+.++++ .+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~----------~~~a~~~a~~~g~~~-----~~~~~eell-~~ 67 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD----------PQRHADFIWGLRRPP-----PVVPLDQLA-TH 67 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC----------HHHHHHHHHhcCCCc-----ccCCHHHHh-cC
Confidence 456899999999999999999986 489999998875 233333333322111 112345565 46
Q ss_pred ceEEecccccC
Q 036924 282 CDVLIPAALGG 292 (295)
Q Consensus 282 ~DvlipaA~~~ 292 (295)
+|+++.|+...
T Consensus 68 ~D~Vvi~tp~~ 78 (271)
T PRK13302 68 ADIVVEAAPAS 78 (271)
T ss_pred CCEEEECCCcH
Confidence 89999998643
No 57
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.37 E-value=0.019 Score=54.11 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=45.7
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
...+|..||. ++|++.+.+++|++|+|+|- |.||+.+|.+|.++|+.|+ ++.++
T Consensus 137 ~~PcTp~avi----~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s~ 191 (284)
T PRK14179 137 MIPCTPAGIM----EMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHSR 191 (284)
T ss_pred CcCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECCC
Confidence 3578988874 55667799999999999999 9999999999999999987 66554
No 58
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.37 E-value=0.016 Score=50.77 Aligned_cols=54 Identities=31% Similarity=0.444 Sum_probs=45.9
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 184 ATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 184 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
-|++-.+..++..++++|.++++++++|.|. |.+|+.+++.|.+.|++|+.+ +.
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~-~R 60 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV-GR 60 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-cC
Confidence 3777777778888888899999999999996 999999999999999988744 44
No 59
>PRK12862 malic enzyme; Reviewed
Probab=96.33 E-value=0.02 Score=60.79 Aligned_cols=101 Identities=22% Similarity=0.246 Sum_probs=75.2
Q ss_pred CchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCC---EEEEEecCCceEECCC--CCCHHHHHHHH
Q 036924 183 AATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGG---KIVAVSDISGAIKNSK--GIDVPSLLKHV 257 (295)
Q Consensus 183 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~---kvVaVsD~~G~iy~~~--GlD~~~l~~~~ 257 (295)
.-||-=+..++..+++..|.++++.||+|.|.|..|.++|++|...|. +|+ +.|++|.++... +++..+. .+.
T Consensus 170 ~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~-~~D~~G~i~~~r~~~l~~~~~-~~a 247 (763)
T PRK12862 170 HGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIW-VTDIKGVVYEGRTELMDPWKA-RYA 247 (763)
T ss_pred ccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEE-EEcCCCeeeCCCCccccHHHH-HHh
Confidence 457777778888999988999999999999999999999999999998 565 999999999865 3543332 122
Q ss_pred HhcCCcccCCCCeeeCCCCccccCceEEecccccCCCC
Q 036924 258 KEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALGGVIN 295 (295)
Q Consensus 258 ~~~g~~~~~~~~~~~~~~~~l~~~~DvlipaA~~~~I~ 295 (295)
+++ + ..+-.|.+.. +||||=++-.|++|
T Consensus 248 ~~~----~-----~~~l~e~~~~-~~v~iG~s~~g~~~ 275 (763)
T PRK12862 248 QKT----D-----ARTLAEVIEG-ADVFLGLSAAGVLK 275 (763)
T ss_pred hhc----c-----cCCHHHHHcC-CCEEEEcCCCCCCC
Confidence 221 1 0123445544 89999888777664
No 60
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.31 E-value=0.015 Score=50.71 Aligned_cols=55 Identities=31% Similarity=0.431 Sum_probs=42.9
Q ss_pred CCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcH-HHHHHHHHHHHCCCEEEEEecCC
Q 036924 180 GRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGN-VGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 180 ~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
....+|++.++. +++....++++++|.|+|.|. +|..+|+.|.++|++|+ +++++
T Consensus 22 ~~~p~~~~a~v~----l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~-v~~r~ 77 (168)
T cd01080 22 GFIPCTPAGILE----LLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVT-VCHSK 77 (168)
T ss_pred CccCChHHHHHH----HHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEE-EEECC
Confidence 345677666554 455555679999999999998 59999999999999865 77765
No 61
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.30 E-value=0.018 Score=54.52 Aligned_cols=47 Identities=23% Similarity=0.463 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 192 AMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 192 ~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++.+.+.++. +.+++|+|+|.|.+|+.+++.|...|++.|.|+|.+
T Consensus 165 Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~ 211 (311)
T cd05213 165 AVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT 211 (311)
T ss_pred HHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34444444443 789999999999999999999998887666688775
No 62
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.26 E-value=0.014 Score=50.52 Aligned_cols=55 Identities=24% Similarity=0.319 Sum_probs=39.6
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCc-HHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFG-NVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
...+|..|+. ++|++.+.+++|++|+|+|-+ .||+.++.+|.++|+.|. +++++-
T Consensus 15 ~~PcTp~aii----~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt-~~h~~T 70 (160)
T PF02882_consen 15 FVPCTPLAII----ELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT-ICHSKT 70 (160)
T ss_dssp S--HHHHHHH----HHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE-EE-TTS
T ss_pred CcCCCHHHHH----HHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE-eccCCC
Confidence 3467877765 455667889999999999987 599999999999999997 788763
No 63
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.26 E-value=0.023 Score=56.25 Aligned_cols=84 Identities=18% Similarity=0.332 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCC
Q 036924 188 GVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFS 267 (295)
Q Consensus 188 Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~ 267 (295)
++..+.-+.+++.-.++++++|.|+|.|.+|.-+|+.|.++|.+-|.|+..+ .+...+..++.|
T Consensus 160 Si~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT----------~erA~~La~~~~------ 223 (414)
T COG0373 160 SISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRT----------LERAEELAKKLG------ 223 (414)
T ss_pred chHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCC----------HHHHHHHHHHhC------
Confidence 4445555555544445899999999999999999999999998877788875 344444444433
Q ss_pred CCeeeCCCCcc--ccCceEEecc
Q 036924 268 GGDSIDSNSIL--IEDCDVLIPA 288 (295)
Q Consensus 268 ~~~~~~~~~~l--~~~~Dvlipa 288 (295)
++.++-+++. -.++||+|-|
T Consensus 224 -~~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 224 -AEAVALEELLEALAEADVVISS 245 (414)
T ss_pred -CeeecHHHHHHhhhhCCEEEEe
Confidence 2333334443 3477777766
No 64
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.24 E-value=0.013 Score=55.73 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=44.9
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCc-HHHHHHHHHHHHCCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFG-NVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+|..|+. ++|++.+.+++|++|+|+|-| .||+.+|.+|.++|+.|+ +++++
T Consensus 139 ~PcTp~aii----~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~ 192 (301)
T PRK14194 139 TPCTPSGCL----RLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSR 192 (301)
T ss_pred CCCcHHHHH----HHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCC
Confidence 468877765 456667899999999999996 999999999999999987 67664
No 65
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=96.20 E-value=0.0099 Score=57.02 Aligned_cols=91 Identities=27% Similarity=0.409 Sum_probs=54.5
Q ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC-C-ceEECCCC---CC-HHHHHHHHHhcCCcc-cCC---CCe
Q 036924 201 GKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI-S-GAIKNSKG---ID-VPSLLKHVKEHRGVK-GFS---GGD 270 (295)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~-~-G~iy~~~G---lD-~~~l~~~~~~~g~~~-~~~---~~~ 270 (295)
|..+.|+||.|+|||++|+.+|+.|...|++|++ .|. . -.....+| .+ +++|++ +.--+. ..| ..+
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~-~d~~~~~~~~~~~~~~~~~~Ld~lL~---~sDiv~lh~PlT~eT~ 212 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIG-YDPYSPRERAGVDGVVGVDSLDELLA---EADILTLHLPLTPETR 212 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEE-ECCCCchhhhccccceecccHHHHHh---hCCEEEEcCCCCcchh
Confidence 3458899999999999999999999999999995 444 2 11222222 22 445544 221111 112 222
Q ss_pred -eeCCCCcccc-CceEEecccccCCCC
Q 036924 271 -SIDSNSILIE-DCDVLIPAALGGVIN 295 (295)
Q Consensus 271 -~~~~~~~l~~-~~DvlipaA~~~~I~ 295 (295)
.++.+++-.. +--+||-||-+.+++
T Consensus 213 g~i~~~~~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 213 GLINAEELAKMKPGAILINAARGGVVD 239 (324)
T ss_pred cccCHHHHhhCCCCeEEEECCCcceec
Confidence 2333333333 334999999887764
No 66
>PRK06932 glycerate dehydrogenase; Provisional
Probab=96.17 E-value=0.014 Score=55.68 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=31.5
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
++.|+||.|+|||++|+.+|+.|...|++|++..
T Consensus 144 ~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~ 177 (314)
T PRK06932 144 DVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAE 177 (314)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEEC
Confidence 5899999999999999999999999999999753
No 67
>PLN03139 formate dehydrogenase; Provisional
Probab=96.12 E-value=0.016 Score=56.91 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=32.2
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++.|+||.|+|+|++|+.+|+.|...|++|++ .|.+
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~-~d~~ 231 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-HDRL 231 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE-ECCC
Confidence 58999999999999999999999999999984 4543
No 68
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.07 E-value=0.016 Score=54.62 Aligned_cols=53 Identities=26% Similarity=0.307 Sum_probs=45.4
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcH-HHHHHHHHHHHCCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGN-VGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+|..|+. +++++.+.+++|++|+|+|-++ ||+.++.+|.++|+.|. +++++
T Consensus 139 ~PcTp~av~----~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt-v~hs~ 192 (285)
T PRK10792 139 RPCTPRGIM----TLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT-VCHRF 192 (285)
T ss_pred CCCCHHHHH----HHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE-EEECC
Confidence 468887765 4556678999999999999999 99999999999999887 78775
No 69
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.05 E-value=0.016 Score=54.69 Aligned_cols=53 Identities=30% Similarity=0.434 Sum_probs=45.5
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcH-HHHHHHHHHHHCCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGN-VGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+|.+|+. +++++.+.+++|++|+|+|-++ ||+-++.+|.++|+.|. +++++
T Consensus 144 ~PcTp~av~----~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-v~hs~ 197 (287)
T PRK14176 144 VPCTPHGVI----RALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS-VCHVF 197 (287)
T ss_pred CCCcHHHHH----HHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE-EEecc
Confidence 468888775 4556678999999999999999 99999999999999986 88875
No 70
>PRK06487 glycerate dehydrogenase; Provisional
Probab=96.05 E-value=0.016 Score=55.15 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=31.6
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
++.|+||.|.|||++|+.+|+.|...|++|++..
T Consensus 145 ~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~ 178 (317)
T PRK06487 145 ELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQ 178 (317)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEEC
Confidence 5899999999999999999999999999999654
No 71
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.02 E-value=0.0048 Score=54.01 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=26.4
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 208 RFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+|+|+|.|..|+.+|..+...|+.|+ +.|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVT-LYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEE-EE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEE-EEECC
Confidence 69999999999999999999999998 66664
No 72
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.98 E-value=0.018 Score=53.42 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=46.5
Q ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCe-eeCCCCccccCce
Q 036924 207 QRFVIQGFGNVGSWAARLIGEK--GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGD-SIDSNSILIEDCD 283 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~--G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~-~~~~~~~l~~~~D 283 (295)
+||+|+|+|++|+.+++.|.+. +.++++|+|++- +...+..++.+ .. .-+.++++ .++|
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~----------~~a~~~a~~~~-------~~~~~~~~ell-~~~D 63 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNL----------EKAENLASKTG-------AKACLSIDELV-EDVD 63 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCH----------HHHHHHHHhcC-------CeeECCHHHHh-cCCC
Confidence 5899999999999999998875 588999998862 23333322211 11 22345666 6899
Q ss_pred EEeccccc
Q 036924 284 VLIPAALG 291 (295)
Q Consensus 284 vlipaA~~ 291 (295)
+++.|+..
T Consensus 64 vVvi~a~~ 71 (265)
T PRK13304 64 LVVECASV 71 (265)
T ss_pred EEEEcCCh
Confidence 99999754
No 73
>PRK07574 formate dehydrogenase; Provisional
Probab=95.98 E-value=0.019 Score=56.31 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=31.5
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++.|+||.|+|+|++|+.+|+.|...|++|++ .|.
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~-~dr 223 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY-TDR 223 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE-ECC
Confidence 48999999999999999999999999999984 444
No 74
>PRK13243 glyoxylate reductase; Reviewed
Probab=95.95 E-value=0.012 Score=56.51 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=32.6
Q ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 201 GKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
|..+.|+||.|+|+|++|+.+|+.|...|++|++ .|.
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~-~d~ 181 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILY-YSR 181 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEE-ECC
Confidence 3458999999999999999999999999999984 454
No 75
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.91 E-value=0.051 Score=51.01 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 185 TGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-+.|+..+++. .+.++++++|.|.|.|.+|++++..|.+.|++=|.|.|.+
T Consensus 110 D~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 110 DWSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CHHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46677766653 3345788999999999999999999999998545588775
No 76
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.88 E-value=0.021 Score=55.50 Aligned_cols=56 Identities=25% Similarity=0.468 Sum_probs=44.2
Q ss_pred CCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 180 GRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 180 ~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+..--||.+..-++ ++..+.-+.||+++|.|||-||+.+|..|...|++|+ |++.+
T Consensus 186 DNrYGtgqS~~DgI---~RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~Vi-VtEvD 241 (420)
T COG0499 186 DNRYGTGQSLLDGI---LRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVI-VTEVD 241 (420)
T ss_pred ccccccchhHHHHH---HhhhceeecCceEEEecccccchHHHHHhhcCCCeEE-EEecC
Confidence 44445776655444 3444566899999999999999999999999999988 88876
No 77
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=95.87 E-value=0.013 Score=55.71 Aligned_cols=37 Identities=30% Similarity=0.532 Sum_probs=32.7
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.++.|+||.|+|||++|+.+|+.+...|++|++. |..
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~-d~~ 177 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYY-STS 177 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEE-CCC
Confidence 3589999999999999999999999999999954 543
No 78
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.82 E-value=0.088 Score=48.72 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 185 TGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-+.|...+++. .+...+++++.|.|.|.+|+.++..|.+.|++|+ |.+.+
T Consensus 100 D~~G~~~~l~~----~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~-v~~R~ 149 (270)
T TIGR00507 100 DGIGLVSDLER----LIPLRPNQRVLIIGAGGAARAVALPLLKADCNVI-IANRT 149 (270)
T ss_pred CHHHHHHHHHh----cCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 56676666543 3445678999999999999999999999998766 66653
No 79
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.75 E-value=0.019 Score=53.63 Aligned_cols=67 Identities=15% Similarity=0.070 Sum_probs=46.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHC---CCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeee-CCCCccccCc
Q 036924 207 QRFVIQGFGNVGSWAARLIGEK---GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSI-DSNSILIEDC 282 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~---G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~-~~~~~l~~~~ 282 (295)
.||+|+|||++|+.+++.|... ++.+++|.|++. +...+... . ...+ +.++++..++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~----------~~~~~~~~---~------~~~~~~l~~ll~~~~ 63 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA----------DLPPALAG---R------VALLDGLPGLLAWRP 63 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCH----------HHHHHhhc---c------CcccCCHHHHhhcCC
Confidence 6999999999999999998653 378998888742 12111111 1 1122 3467778899
Q ss_pred eEEecccccC
Q 036924 283 DVLIPAALGG 292 (295)
Q Consensus 283 DvlipaA~~~ 292 (295)
|++|+||-..
T Consensus 64 DlVVE~A~~~ 73 (267)
T PRK13301 64 DLVVEAAGQQ 73 (267)
T ss_pred CEEEECCCHH
Confidence 9999999654
No 80
>PLN02928 oxidoreductase family protein
Probab=95.73 E-value=0.017 Score=55.88 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=32.3
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
..+.|+||.|+|||++|+.+|+.|...|++|++. |.
T Consensus 155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~-dr 190 (347)
T PLN02928 155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLAT-RR 190 (347)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CC
Confidence 4589999999999999999999999999999854 54
No 81
>PRK06436 glycerate dehydrogenase; Provisional
Probab=95.64 E-value=0.02 Score=54.42 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=31.0
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
.+.|+||.|.|+|++|+.+|+.|...|++|++..
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~ 152 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYT 152 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEC
Confidence 4899999999999999999999999999999554
No 82
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=95.63 E-value=0.036 Score=47.51 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=29.5
Q ss_pred CEEEEEcCcHHHHHHHHHHH-HCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIG-EKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~-~~G~kvVaVsD~~ 239 (295)
.||+|-|||-+|+.+++.+. +....||+|.|..
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence 48999999999999999998 4569999999885
No 83
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.62 E-value=0.037 Score=52.48 Aligned_cols=53 Identities=21% Similarity=0.264 Sum_probs=44.7
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
-..+|.+|+.. +|++.+.+++|++|+|+| .|.||+.+|..|.+.|+.|+ |+++
T Consensus 137 ~~PcTp~ai~~----ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~~ 190 (296)
T PRK14188 137 LVPCTPLGCMM----LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAHS 190 (296)
T ss_pred CcCCCHHHHHH----HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EECC
Confidence 35789877654 555678899999999999 99999999999999999998 6654
No 84
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.59 E-value=0.09 Score=49.59 Aligned_cols=55 Identities=29% Similarity=0.373 Sum_probs=45.5
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
...+|.+|+. +++++.+.+++|++|+|+|= ..||+-++.+|.++++.|. ++.++.
T Consensus 135 ~~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-ichs~T 190 (282)
T PRK14169 135 VVASTPYGIM----ALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT-IAHSKT 190 (282)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EECCCC
Confidence 4578988765 45566789999999999995 6789999999999999987 787753
No 85
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.58 E-value=0.038 Score=52.18 Aligned_cols=54 Identities=33% Similarity=0.332 Sum_probs=45.5
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCc-HHHHHHHHHHHHCCCEEEEEecCC
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFG-NVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-..+|..|+. ++|++.+.+++|++|+|+|-| .||+.+|.+|.++|+.|. +++++
T Consensus 136 ~~PcTp~avi----~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt-v~hs~ 190 (285)
T PRK14191 136 FVPATPMGVM----RLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS-VCHIL 190 (285)
T ss_pred CCCCcHHHHH----HHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE-EEeCC
Confidence 3578887765 556667899999999999998 999999999999999987 77764
No 86
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.55 E-value=0.11 Score=48.25 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCC-CEEEEEecCC
Q 036924 185 TGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKG-GKIVAVSDIS 239 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G-~kvVaVsD~~ 239 (295)
.+.|...++++ ..+.++++++|.|.|.|.+|+.+++.|.+.| .+|+ |.+++
T Consensus 105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~-v~~R~ 156 (278)
T PRK00258 105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEIT-IVNRT 156 (278)
T ss_pred cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEE-EEeCC
Confidence 45565555542 2466789999999999999999999999999 4555 77764
No 87
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=95.51 E-value=0.025 Score=53.95 Aligned_cols=34 Identities=24% Similarity=0.138 Sum_probs=31.3
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
.++|+||.|+|+|++|+.+|+.|...|++|+++.
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~ 166 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWS 166 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4789999999999999999999999999998654
No 88
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.49 E-value=0.013 Score=58.06 Aligned_cols=67 Identities=22% Similarity=0.304 Sum_probs=44.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHC----------CCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCe-eeCC
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEK----------GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGD-SIDS 274 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~----------G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~-~~~~ 274 (295)
..+|+|.|+|+||+.+++.|.++ +.+|++|+|++.... .+++ +++.. .-+.
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~--~~~~----------------~~~~~~~~d~ 64 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD--RGVD----------------LPGILLTTDP 64 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc--cCCC----------------CcccceeCCH
Confidence 46899999999999999988653 478999999864221 1111 11111 1134
Q ss_pred CCcc-ccCceEEecccc
Q 036924 275 NSIL-IEDCDVLIPAAL 290 (295)
Q Consensus 275 ~~~l-~~~~DvlipaA~ 290 (295)
++++ ..+.||+++|+-
T Consensus 65 ~~ll~d~~iDvVve~tg 81 (426)
T PRK06349 65 EELVNDPDIDIVVELMG 81 (426)
T ss_pred HHHhhCCCCCEEEECCC
Confidence 5666 457899998863
No 89
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.48 E-value=0.095 Score=49.33 Aligned_cols=55 Identities=20% Similarity=0.275 Sum_probs=45.4
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
-..+|..|+. +++++.+.+++|++|+|+|= ..||+-++.+|.++|+.|. +++++.
T Consensus 137 ~~PcTp~av~----~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt-~chs~T 192 (278)
T PRK14172 137 FLPCTPNSVI----TLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT-ICHSKT 192 (278)
T ss_pred CcCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCCC
Confidence 3568887765 45666789999999999995 6799999999999999886 888753
No 90
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.48 E-value=0.032 Score=49.80 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++.++|+|.|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 788999999999999999999999998544488876
No 91
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.45 E-value=0.033 Score=47.64 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=26.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+++|+|++|+.+|+.|.++|+.|. +.|.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~-~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVT-VYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEE-EEESS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEE-eeccc
Confidence 589999999999999999999999987 55543
No 92
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.42 E-value=0.071 Score=45.14 Aligned_cols=52 Identities=23% Similarity=0.456 Sum_probs=42.6
Q ss_pred CchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 183 AATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 183 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..|..| +.+++++.|.+++|++|.|.|= ..||..++.+|.++|+.|. +++++
T Consensus 9 p~t~~a----~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~-~~~~~ 61 (140)
T cd05212 9 SPVAKA----VKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY-SCDWK 61 (140)
T ss_pred ccHHHH----HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EeCCC
Confidence 456555 4566677899999999999995 7899999999999999998 66764
No 93
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.40 E-value=0.038 Score=49.21 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++.++|.|.|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 688999999999999999999999998545588876
No 94
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=95.40 E-value=0.024 Score=49.37 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCce
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGA 241 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~ 241 (295)
|++++|+|+|||+-|..-|..|.+.|.+|+ |....++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~-Vglr~~s 38 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVI-VGLREGS 38 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEE-EEE-TTC
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEE-EEecCCC
Confidence 478999999999999999999999999998 7776654
No 95
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.36 E-value=0.028 Score=53.94 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=30.8
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEE
Q 036924 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaV 235 (295)
.++|++|+|+|+|++|+.+|+.|...|.+|++.
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~ 175 (330)
T PRK12480 143 PVKNMTVAIIGTGRIGAATAKIYAGFGATITAY 175 (330)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 589999999999999999999999999999854
No 96
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.34 E-value=0.02 Score=45.48 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=31.0
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++++|++|.|+|.|+||..-++.|.+.|++|+-||..
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3578999999999999999999999999999866655
No 97
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.34 E-value=0.075 Score=51.05 Aligned_cols=32 Identities=34% Similarity=0.618 Sum_probs=29.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCC--CEEEEEecC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKG--GKIVAVSDI 238 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G--~kvVaVsD~ 238 (295)
.||+|=|||-+|+.+++.+.+++ .+||||.|.
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~ 35 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL 35 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 58999999999999999999875 999999995
No 98
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=95.31 E-value=0.13 Score=43.97 Aligned_cols=32 Identities=31% Similarity=0.549 Sum_probs=28.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHH-CCCEEEEEecC
Q 036924 207 QRFVIQGFGNVGSWAARLIGE-KGGKIVAVSDI 238 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~-~G~kvVaVsD~ 238 (295)
++|+|.|||.+|+.+++.+.+ .+.++++|.|.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~ 33 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL 33 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 489999999999999998874 57999999884
No 99
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=95.28 E-value=0.029 Score=55.37 Aligned_cols=35 Identities=20% Similarity=0.387 Sum_probs=31.8
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
..+.|+||.|+|||++|+.+|+.+...|++|++..
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d 181 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYD 181 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 45899999999999999999999999999999643
No 100
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=95.25 E-value=0.05 Score=49.86 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=48.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCccccCceE
Q 036924 207 QRFVIQGFGNVGSWAARLIGEK--GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDV 284 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~--G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l~~~~Dv 284 (295)
++|.|+|+|++|..+++++.+- .++.++|.|.+. ++..+..+..+ .....+-++++ .+.|+
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~----------ek~~~~~~~~~------~~~~s~ide~~-~~~Dl 63 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDE----------EKAKELEASVG------RRCVSDIDELI-AEVDL 63 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCH----------HHHHHHHhhcC------CCccccHHHHh-hccce
Confidence 4799999999999999988643 599999999863 34444332221 11123445666 79999
Q ss_pred EecccccC
Q 036924 285 LIPAALGG 292 (295)
Q Consensus 285 lipaA~~~ 292 (295)
+++||..+
T Consensus 64 vVEaAS~~ 71 (255)
T COG1712 64 VVEAASPE 71 (255)
T ss_pred eeeeCCHH
Confidence 99998654
No 101
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=95.19 E-value=0.029 Score=53.71 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=31.9
Q ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHH-HCCCEEEEEecC
Q 036924 201 GKNIAGQRFVIQGFGNVGSWAARLIG-EKGGKIVAVSDI 238 (295)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~-~~G~kvVaVsD~ 238 (295)
|.++.|+||.|+|||++|+.+|+.|. ..|++|++ .|.
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~-~~~ 177 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILY-NAR 177 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEE-ECC
Confidence 34589999999999999999999997 88999984 443
No 102
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=95.14 E-value=0.07 Score=48.23 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=29.4
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
++++|.|.||+|..+|+.|...|+.|+ |+.+++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~r~ 34 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSSRG 34 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecCCC
Confidence 589999999999999999999999998 776653
No 103
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.14 E-value=0.078 Score=51.65 Aligned_cols=35 Identities=29% Similarity=0.420 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+.+.+|+|+|+|.+|+.+++.|...|++|+ +.|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~-v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVT-ILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEE-EEECC
Confidence 567899999999999999999999999866 66763
No 104
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.12 E-value=0.084 Score=50.73 Aligned_cols=32 Identities=34% Similarity=0.650 Sum_probs=28.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHCC----CEEEEEecCC
Q 036924 208 RFVIQGFGNVGSWAARLIGEKG----GKIVAVSDIS 239 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G----~kvVaVsD~~ 239 (295)
||+|.|||.+|+.++|.|.+.+ +.|++|.|..
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~ 36 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELA 36 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCC
Confidence 5899999999999999998764 8999998853
No 105
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=95.09 E-value=0.042 Score=52.78 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=30.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHC-CCEEEEEecCC
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDIS 239 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~-G~kvVaVsD~~ 239 (295)
..||+|.|+||+|+..++.+.+. ++.+|||.|.+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence 47999999999999999999765 89999999986
No 106
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.05 E-value=0.082 Score=47.35 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=47.3
Q ss_pred CCchHHHHHHHHHHH--H---HHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCCceEE
Q 036924 182 DAATGRGVLFAMEAL--L---NEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDISGAIK 243 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~--l---~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~G~iy 243 (295)
..+|.+||...++.. . +..|.+++|++|+|+|= ..||+-+|.+|.++|+.|. ++|++|..+
T Consensus 33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~~~~~ 99 (197)
T cd01079 33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDINGIQV 99 (197)
T ss_pred cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecCcccc
Confidence 468988887655532 0 01145899999999995 6689999999999999998 999887655
No 107
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.98 E-value=0.11 Score=51.40 Aligned_cols=37 Identities=24% Similarity=0.598 Sum_probs=31.5
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++.+++|+|.|.|.+|+.+++.|...|++-|.|++.+
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~ 215 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT 215 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 5789999999999999999999999998444477664
No 108
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=94.97 E-value=0.12 Score=52.65 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCC----------CCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 190 LFAMEALLNEHGK----------NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 190 ~~~~~~~l~~~g~----------~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+.++.++.+.++. ...+.||+|.|.|.+|..++..+...|++|+ +.|.+
T Consensus 139 y~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~-a~D~~ 197 (509)
T PRK09424 139 YRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVR-AFDTR 197 (509)
T ss_pred HHHHHHHHHHhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 4566666665543 2468999999999999999999999999866 67764
No 109
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=94.93 E-value=0.027 Score=52.59 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=28.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|++|..+|+.|...|..|+ +.|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~-~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVW-LLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEE-EEeCC
Confidence 589999999999999999999999887 55654
No 110
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.93 E-value=0.18 Score=47.26 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHcCC--CCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 185 TGRGVLFAMEALLNEHGK--NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~--~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-+.|...+++ +.+. ++++++|.|.|.|.+++.++..|.+.|++-|.|.+++
T Consensus 106 D~~G~~~~l~----~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 106 DWDGIAGALA----NIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred CHHHHHHHHH----hhCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4567666665 3442 4789999999999999999999999998656677764
No 111
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.93 E-value=0.055 Score=49.92 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=30.2
Q ss_pred CEEEEEcC-cHHHHHHHHHHHH-CCCEEEEEecCCc
Q 036924 207 QRFVIQGF-GNVGSWAARLIGE-KGGKIVAVSDISG 240 (295)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~-~G~kvVaVsD~~G 240 (295)
+||+|.|+ |++|+..++.+.+ .++++++++|.+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~ 37 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG 37 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 58999998 9999999999876 5799999999864
No 112
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.89 E-value=0.04 Score=47.46 Aligned_cols=34 Identities=32% Similarity=0.512 Sum_probs=28.1
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+...+|+|.|.|+||.++++.|...|++++ +.|.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~-~~d~ 51 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVV-VPDE 51 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEE-EEES
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEE-eccC
Confidence 567899999999999999999999999998 5555
No 113
>PLN02306 hydroxypyruvate reductase
Probab=94.87 E-value=0.043 Score=53.91 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=30.3
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHH-HCCCEEEEE
Q 036924 202 KNIAGQRFVIQGFGNVGSWAARLIG-EKGGKIVAV 235 (295)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~-~~G~kvVaV 235 (295)
.++.|+||.|+|||++|+.+|+.|. ..|++|++.
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~ 195 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4589999999999999999999985 789999854
No 114
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=94.85 E-value=0.21 Score=50.26 Aligned_cols=49 Identities=16% Similarity=0.347 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 185 TGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
-+.|+..+++ +.+.+++++++.|.|.|.+|+.++..|.+.|++|+ +.|.
T Consensus 315 D~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~-i~~R 363 (477)
T PRK09310 315 DGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELL-IFNR 363 (477)
T ss_pred CHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence 4566666654 45677899999999999999999999999999876 5555
No 115
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.84 E-value=0.26 Score=46.47 Aligned_cols=53 Identities=26% Similarity=0.388 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 185 TGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-|.|+..++++.. .+.+.++++++|.|.|-.+++++..|.+.|++=|.|.+++
T Consensus 107 D~~G~~~~L~~~~--~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt 159 (283)
T COG0169 107 DGIGFLRALKEFG--LPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT 159 (283)
T ss_pred CHHHHHHHHHhcC--CCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3556555444321 1245779999999999999999999999996433377764
No 116
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.83 E-value=0.061 Score=48.38 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++..+|+|+|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 788999999999999999999999998755588776
No 117
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.80 E-value=0.045 Score=52.70 Aligned_cols=32 Identities=22% Similarity=0.475 Sum_probs=30.2
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEE
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaV 235 (295)
++|+||+|+|+|++|+..|+.|.+.|.+|+..
T Consensus 14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~ 45 (335)
T PRK13403 14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVG 45 (335)
T ss_pred hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEE
Confidence 89999999999999999999999999999843
No 118
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=94.78 E-value=0.076 Score=48.80 Aligned_cols=36 Identities=19% Similarity=0.467 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++.++|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 678999999999999999999999997656688775
No 119
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.74 E-value=0.13 Score=47.92 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=28.4
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|++|..+|..|...|..|+ +.|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~-l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVL-LNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEE-EEeCC
Confidence 589999999999999999999999987 56653
No 120
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.72 E-value=0.033 Score=56.51 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=29.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|.+|+.+|..|...|+.|+ +.|.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~-l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVL-LYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 589999999999999999999999998 67764
No 121
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.69 E-value=0.066 Score=48.41 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++.+||+|.|.|.+|+++|+.|...|..-+.+.|.+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 678999999999999999999999998766788765
No 122
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=94.66 E-value=0.16 Score=50.40 Aligned_cols=47 Identities=19% Similarity=0.283 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 192 AMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 192 ~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++.+.+.+ .++++++|.|+|.|.+|+.+++.|.++|++-+.|+..+
T Consensus 168 Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt 214 (414)
T PRK13940 168 AITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT 214 (414)
T ss_pred HHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 334333333 34789999999999999999999999998766688775
No 123
>PRK08223 hypothetical protein; Validated
Probab=94.66 E-value=0.057 Score=51.06 Aligned_cols=36 Identities=22% Similarity=0.388 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++..+|+|+|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 678999999999999999999999998777788876
No 124
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.61 E-value=0.047 Score=50.07 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++.+|+|.|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 678899999999999999999999997666688765
No 125
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.59 E-value=0.051 Score=52.33 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEE
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVA 234 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVa 234 (295)
+++++|+|+|+|++|+.+|+.|.+.|.+|+.
T Consensus 15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv 45 (330)
T PRK05479 15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVVV 45 (330)
T ss_pred hCCCEEEEEeeHHHHHHHHHHHHHCCCEEEE
Confidence 7899999999999999999999999999873
No 126
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=94.58 E-value=0.1 Score=48.46 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=27.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEecC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEK-GGKIVAVSDI 238 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~-G~kvVaVsD~ 238 (295)
+||+|+|+|++|+.+++.|.+. +..+++|++.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~ 34 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVP 34 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEc
Confidence 5899999999999999998865 6888888854
No 127
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.57 E-value=0.036 Score=51.59 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=28.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|.+|..+|..|.+.|..|+ +.|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEE-EEeCC
Confidence 479999999999999999999999987 55654
No 128
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.56 E-value=0.056 Score=50.12 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=28.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|.+|..+|..|...|..|+ +.|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~-~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVV-MVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceE-EEeCC
Confidence 479999999999999999999999888 45654
No 129
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.55 E-value=0.084 Score=49.40 Aligned_cols=36 Identities=31% Similarity=0.620 Sum_probs=31.1
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++.+|+|.|.|.||+++|+.|.+.|..=+.+.|.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 688999999999999999999999995445577765
No 130
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.54 E-value=0.033 Score=56.45 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=28.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|..|+.+|..|...|..|+ +.|.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~-l~d~~ 37 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVL-LYDIR 37 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 589999999999999999999999998 66764
No 131
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.53 E-value=0.059 Score=51.92 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=32.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++++|+|+|.|.+|+++|+.|...|..-+.+.|.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 688999999999999999999999998666688876
No 132
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=94.52 E-value=0.058 Score=54.92 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=31.7
Q ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEE
Q 036924 201 GKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaV 235 (295)
|..+.|+||.|+|||++|+.+|+.|...|++|++.
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~ 167 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAY 167 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 34589999999999999999999999999999854
No 133
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.47 E-value=0.29 Score=46.57 Aligned_cols=54 Identities=26% Similarity=0.341 Sum_probs=43.8
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHC----CCEEEEEecCCc
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEK----GGKIVAVSDISG 240 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~----G~kvVaVsD~~G 240 (295)
..+|..|+. ++|++.+++++|++|+|+|= ..||+-++.+|.++ ++.|. ++.++-
T Consensus 137 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~T 195 (297)
T PRK14167 137 KPCTPHGIQ----KLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT-VCHSRT 195 (297)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE-EeCCCC
Confidence 468887765 55667789999999999995 67899999999988 78776 787753
No 134
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.45 E-value=0.11 Score=49.08 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=45.8
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCc-HHHHHHHHHHHHCCCEEEEEecCC
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFG-NVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-..+|..|+ .++|++.+.+++|++|+|+|-+ .||+-++.+|.++++.|. ++.++
T Consensus 136 ~~PcTp~av----i~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs~ 190 (281)
T PRK14183 136 FVPCTPLGV----MELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHIF 190 (281)
T ss_pred CCCCcHHHH----HHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 356887776 4566777899999999999987 899999999999999887 88775
No 135
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.38 E-value=0.2 Score=50.99 Aligned_cols=36 Identities=17% Similarity=0.186 Sum_probs=31.1
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
..+.||+|.|+|.+|..+++.+...|++|+ +.|.+.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~-v~d~~~ 197 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVR-AFDTRP 197 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCCH
Confidence 456899999999999999999999999976 667653
No 136
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=94.38 E-value=0.082 Score=51.00 Aligned_cols=31 Identities=26% Similarity=0.493 Sum_probs=27.0
Q ss_pred EEEEcCcHHHHHHHHHHHH-CCCEEEEEecCC
Q 036924 209 FVIQGFGNVGSWAARLIGE-KGGKIVAVSDIS 239 (295)
Q Consensus 209 vaIqGfGnVG~~~a~~L~~-~G~kvVaVsD~~ 239 (295)
|+|.|||.+|+.+++.+.+ .+.+||||+|.+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~ 32 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTS 32 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCC
Confidence 6899999999999999764 579999999953
No 137
>PLN00203 glutamyl-tRNA reductase
Probab=94.35 E-value=0.23 Score=50.68 Aligned_cols=48 Identities=25% Similarity=0.318 Sum_probs=37.0
Q ss_pred HHHHHHHHcCC-CCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 192 AMEALLNEHGK-NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 192 ~~~~~l~~~g~-~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++.+.+.++. ++.+++|.|+|.|.+|+.+++.|...|++-|.|.+.+
T Consensus 251 Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs 299 (519)
T PLN00203 251 AVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS 299 (519)
T ss_pred HHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 44444446664 5889999999999999999999999997544466654
No 138
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.34 E-value=0.24 Score=48.25 Aligned_cols=54 Identities=26% Similarity=0.318 Sum_probs=45.7
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-..+|..|+. ++|++.+.+++|++|+|+|= ..||+-++.+|.++++.|. ++.++
T Consensus 210 f~PCTp~avi----elL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT-icHs~ 264 (364)
T PLN02616 210 FVPCTPKGCI----ELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHSR 264 (364)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEE-EeCCC
Confidence 4578988864 56667799999999999995 6789999999999999887 78775
No 139
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.34 E-value=0.066 Score=45.94 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=31.8
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
++++|++|.|+|-|+||...++.|.+.|++|+-|+
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 56899999999999999999999999999998553
No 140
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.34 E-value=0.15 Score=49.29 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHC-CC-EEEEEecC
Q 036924 184 ATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEK-GG-KIVAVSDI 238 (295)
Q Consensus 184 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~-G~-kvVaVsD~ 238 (295)
.|.+-...+++.+.+.++.++++++|+|.|. |.+|+.+++.|.++ |. +++ +.++
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R 189 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR 189 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence 3666666778888888898999999999998 89999999999754 64 555 4554
No 141
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=94.33 E-value=0.098 Score=48.59 Aligned_cols=74 Identities=23% Similarity=0.247 Sum_probs=46.0
Q ss_pred CEEEEEc-CcHHHHHHHHHHHH-CCCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeC-CCCccccCce
Q 036924 207 QRFVIQG-FGNVGSWAARLIGE-KGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSID-SNSILIEDCD 283 (295)
Q Consensus 207 ~~vaIqG-fGnVG~~~a~~L~~-~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~-~~~~l~~~~D 283 (295)
+||+|.| +|.+|+.+++.+.+ .+++++++.|+...-. .|-|..++... ..+ +....+ .+++ ..++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~--~~~~~~~~~~~-------~~~-gv~~~~d~~~l-~~~~D 70 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL--QGTDAGELAGI-------GKV-GVPVTDDLEAV-ETDPD 70 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc--cCCCHHHhcCc-------CcC-CceeeCCHHHh-cCCCC
Confidence 5899999 79999999999875 6899999999532211 13344333211 011 122222 2333 45789
Q ss_pred EEeccccc
Q 036924 284 VLIPAALG 291 (295)
Q Consensus 284 vlipaA~~ 291 (295)
|+|+|+..
T Consensus 71 vVIdfT~p 78 (266)
T TIGR00036 71 VLIDFTTP 78 (266)
T ss_pred EEEECCCh
Confidence 99998743
No 142
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.32 E-value=0.16 Score=47.08 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=42.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCccccCceEEe
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLI 286 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l~~~~Dvli 286 (295)
++|+|+|.|++|+.+|+.|.++|.+|+ +.|.+ .+.+.+. .+.|.+... .+..+. -.+||++|
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~-~~d~~----------~~~~~~a-~~~g~~~~~-----~~~~~~-~~~aDlVi 62 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVY-GVSRR----------ESTCERA-IERGLVDEA-----STDLSL-LKDCDLVI 62 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEE-EEECC----------HHHHHHH-HHCCCcccc-----cCCHhH-hcCCCEEE
Confidence 479999999999999999999999887 44543 2233222 222332211 111232 35899999
Q ss_pred ccccc
Q 036924 287 PAALG 291 (295)
Q Consensus 287 paA~~ 291 (295)
.|...
T Consensus 63 lavp~ 67 (279)
T PRK07417 63 LALPI 67 (279)
T ss_pred EcCCH
Confidence 88764
No 143
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.26 E-value=0.27 Score=46.50 Aligned_cols=53 Identities=28% Similarity=0.397 Sum_probs=43.8
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHH----CCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGE----KGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~----~G~kvVaVsD~~ 239 (295)
..+|..|+. ++|++.+++++|++|+|+|= ..||+-++.+|.+ +++.|. +++++
T Consensus 137 ~PcTp~av~----~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt-~~hs~ 194 (286)
T PRK14184 137 RPCTPAGVM----TLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT-VCHSR 194 (286)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE-EEeCC
Confidence 478887764 55666789999999999995 6789999999998 789887 67765
No 144
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.25 E-value=0.04 Score=51.64 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=28.4
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.+|+|+|.|..|+..|..|...|..|+ +-|.+
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~~ 37 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVL-VFETT 37 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEE-EEECC
Confidence 389999999999999999999999988 66653
No 145
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=94.25 E-value=0.11 Score=49.95 Aligned_cols=39 Identities=31% Similarity=0.442 Sum_probs=33.8
Q ss_pred cCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 200 HGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 200 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++.++.|+|+.|.|+|.+|+.+|+.++-.|++|+ ..|.+
T Consensus 140 ~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~-y~~~~ 178 (324)
T COG1052 140 LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL-YYDRS 178 (324)
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEE-EECCC
Confidence 3567899999999999999999999998999998 45544
No 146
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.24 E-value=0.28 Score=50.04 Aligned_cols=55 Identities=31% Similarity=0.446 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHHHH------cCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 184 ATGRGVLFAMEALLNE------HGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 184 aTg~Gv~~~~~~~l~~------~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
--+.|+..+++..+.. .+.++++++|.|.|.|.+|+.++..|.++|++|+ |.+.+
T Consensus 351 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~-i~nR~ 411 (529)
T PLN02520 351 TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV-IANRT 411 (529)
T ss_pred ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 3567888888754432 2456889999999999999999999999999876 66663
No 147
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.23 E-value=0.14 Score=48.44 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=44.4
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+|..|+ .++|++.+.+++|++|+|+| ...||+-++.+|.++++.|. +++++
T Consensus 138 ~PcTp~av----~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt-~chs~ 191 (284)
T PRK14190 138 LPCTPHGI----LELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT-YCHSK 191 (284)
T ss_pred CCCCHHHH----HHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EEeCC
Confidence 46887776 45667779999999999999 47899999999999999987 77764
No 148
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.21 E-value=0.051 Score=50.62 Aligned_cols=32 Identities=28% Similarity=0.334 Sum_probs=27.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|.+|..+|..|.+.|..|+ +.|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~-l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVT-IYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEE-EEeCC
Confidence 489999999999999999999999987 55543
No 149
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.20 E-value=0.12 Score=48.57 Aligned_cols=54 Identities=28% Similarity=0.386 Sum_probs=45.3
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCc-HHHHHHHHHHHHCCCEEEEEecCC
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFG-NVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfG-nVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-..+|..|+. +++++.+.+++|++|+|.|.+ .||+.+|.+|..+|+.|. +++++
T Consensus 131 ~~PcTp~av~----~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt-v~hs~ 185 (279)
T PRK14178 131 FAPCTPNGIM----TLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT-ICHSK 185 (279)
T ss_pred CCCCCHHHHH----HHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE-EEecC
Confidence 3568888765 456667899999999999998 999999999999999887 67664
No 150
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=94.14 E-value=0.074 Score=54.17 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEE
Q 036924 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaV 235 (295)
..+.|+||.|+|||++|+.+|+.|...|++|++.
T Consensus 136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~ 169 (526)
T PRK13581 136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAY 169 (526)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 4588999999999999999999999999999854
No 151
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.05 E-value=0.063 Score=49.10 Aligned_cols=36 Identities=28% Similarity=0.587 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++..+|+|.|.|.||+++++.|...|..=+.+.|.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 578899999999999999999999997444477764
No 152
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.97 E-value=0.083 Score=47.18 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++++|.|+|.|.||...++.|.+.|++|+-|+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 46899999999999999999999999999998454
No 153
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=93.96 E-value=0.096 Score=50.04 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+++++|+|+|+||.|+.+|+.|.+.|.+|+...+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~ 35 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRK 35 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECc
Confidence 57899999999999999999999999887633333
No 154
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=93.92 E-value=0.23 Score=47.84 Aligned_cols=33 Identities=18% Similarity=0.419 Sum_probs=29.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHH-CCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGE-KGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~-~G~kvVaVsD~~ 239 (295)
.||+|.|||.+|+.+++.+.+ .++++++|+|++
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~ 35 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK 35 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 489999999999999998875 579999999964
No 155
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=93.89 E-value=0.13 Score=46.05 Aligned_cols=53 Identities=26% Similarity=0.270 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHH--HHCCCEEEEEecCC
Q 036924 186 GRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLI--GEKGGKIVAVSDIS 239 (295)
Q Consensus 186 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~G~kvVaVsD~~ 239 (295)
||=|...++.+-+.++.. ...+|+|.|.|++|+.+++.+ .+.|++++|+.|.+
T Consensus 65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 455655555544466666 567999999999999999864 35789999999875
No 156
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.87 E-value=0.13 Score=50.15 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++++|+|+|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 789999999999999999999999998666688875
No 157
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.85 E-value=0.18 Score=47.64 Aligned_cols=54 Identities=26% Similarity=0.361 Sum_probs=44.9
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
...+|.+|+. ++|++.+++++|++|+|+|= ..||+-++.+|.++++.|. ++.++
T Consensus 134 ~~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-ichs~ 188 (287)
T PRK14173 134 LEPCTPAGVV----RLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT-LAHSK 188 (287)
T ss_pred CCCCCHHHHH----HHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EeCCC
Confidence 3578887765 45667799999999999995 7799999999999999887 77775
No 158
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.83 E-value=0.089 Score=50.97 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++..+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 578999999999999999999999998767788865
No 159
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.82 E-value=0.18 Score=47.56 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=45.9
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
-..+|.+|+.. ++++.+.+++|++|+|+|= ..||+-++.+|.++++.|. +++++-
T Consensus 138 ~~PcTp~avi~----ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-~chs~T 193 (284)
T PRK14177 138 YLPCTPYGMVL----LLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT-LCHSKT 193 (284)
T ss_pred CCCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC
Confidence 35689888765 5566789999999999995 7799999999999999887 888753
No 160
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.82 E-value=0.19 Score=47.80 Aligned_cols=53 Identities=25% Similarity=0.316 Sum_probs=44.1
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+|.+|+. +++++.+++++|++|+|+|= ..||+-++.+|.++|+.|. ++.++
T Consensus 138 ~PcTp~aii----~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt-v~hs~ 191 (297)
T PRK14186 138 RSCTPAGVM----RLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT-IAHSR 191 (297)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence 467877664 55667799999999999995 6789999999999999987 77765
No 161
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.82 E-value=0.18 Score=47.58 Aligned_cols=54 Identities=24% Similarity=0.402 Sum_probs=44.8
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
..+|..|+. +++++.|.+++|++|+|+|- ..||+-++.+|.++++.|. ++.++.
T Consensus 137 ~PcTp~avi----~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-ichs~T 191 (284)
T PRK14170 137 VPCTPAGII----ELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT-IAHSRT 191 (284)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC
Confidence 468877764 55667899999999999996 5689999999999999887 787753
No 162
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.75 E-value=0.19 Score=47.39 Aligned_cols=53 Identities=21% Similarity=0.315 Sum_probs=44.2
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+|.+|+.. +|++.+.+++|++|+|+|= ..||+-++.+|.++++.|. ++.++
T Consensus 138 ~PcTp~aii~----lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt-~chs~ 191 (282)
T PRK14180 138 ESCTPKGIMT----MLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHRF 191 (282)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EEcCC
Confidence 5688887754 4556789999999999995 6789999999999999987 77775
No 163
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.75 E-value=0.1 Score=50.99 Aligned_cols=87 Identities=11% Similarity=0.232 Sum_probs=53.2
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC---------ceEECCCCCCHHHHHHHHHhcCCcccCCC----Ce
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS---------GAIKNSKGIDVPSLLKHVKEHRGVKGFSG----GD 270 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~---------G~iy~~~GlD~~~l~~~~~~~g~~~~~~~----~~ 270 (295)
++..+|+|+|.|.+|..+++.|...|..=+.+.|.+ -.+|+++-+...+....+++-..+...-. ..
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~ 118 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE 118 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence 578899999999999999999999997556688876 34566665543333332222111111101 11
Q ss_pred eeCCCCc--cccCceEEecccc
Q 036924 271 SIDSNSI--LIEDCDVLIPAAL 290 (295)
Q Consensus 271 ~~~~~~~--l~~~~DvlipaA~ 290 (295)
.++.+.+ +-.++|++|.|.-
T Consensus 119 ~i~~~~~~~~~~~~DlVid~~D 140 (370)
T PRK05600 119 RLTAENAVELLNGVDLVLDGSD 140 (370)
T ss_pred ecCHHHHHHHHhCCCEEEECCC
Confidence 2332222 1247999999863
No 164
>PRK08605 D-lactate dehydrogenase; Validated
Probab=93.75 E-value=0.093 Score=50.31 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=31.0
Q ss_pred CCCCCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEecC
Q 036924 201 GKNIAGQRFVIQGFGNVGSWAARLI-GEKGGKIVAVSDI 238 (295)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~kvVaVsD~ 238 (295)
+..+.|++|.|+|+|++|+.+|+.| ...|.+|++ .|.
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~-~d~ 178 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVA-YDP 178 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEE-ECC
Confidence 3458999999999999999999999 557899985 454
No 165
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.71 E-value=0.24 Score=44.71 Aligned_cols=38 Identities=26% Similarity=0.408 Sum_probs=34.8
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++++|++|+|+|-|.||..=+++|.+.|++|+-||+.-
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~ 45 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEF 45 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 45899999999999999999999999999999888774
No 166
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=93.69 E-value=0.2 Score=47.66 Aligned_cols=54 Identities=26% Similarity=0.300 Sum_probs=45.2
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-..+|..||. +++++.+++++|++|+|+|= ..||+-++.+|.++|+.|. ++.++
T Consensus 146 ~~PcTp~avi----~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt-vchs~ 200 (299)
T PLN02516 146 FLPCTPKGCL----ELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT-VVHSR 200 (299)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence 3578988854 45566789999999999995 6789999999999999887 88875
No 167
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.68 E-value=0.2 Score=47.45 Aligned_cols=54 Identities=20% Similarity=0.254 Sum_probs=45.3
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
..+|..|+ .+++++.+.+++|++|+|+|= ..||+-++.+|.++++.|. ++.++.
T Consensus 139 ~PcTp~av----~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt-ichs~T 193 (288)
T PRK14171 139 IPCTALGC----LAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVT-ICHSKT 193 (288)
T ss_pred cCCCHHHH----HHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC
Confidence 56888875 455667799999999999995 6789999999999999887 888764
No 168
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=93.64 E-value=0.19 Score=39.83 Aligned_cols=68 Identities=25% Similarity=0.241 Sum_probs=44.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCccc-cCce
Q 036924 207 QRFVIQGFGNVGSWAARLIGEK--GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILI-EDCD 283 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~--G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l~-~~~D 283 (295)
.||+|+|+|+.|+...+.+.+. +.++++|+|.+. +...+..++.+ +.. .-+.+++++ .++|
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~----------~~~~~~~~~~~-~~~-----~~~~~~ll~~~~~D 64 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP----------ERAEAFAEKYG-IPV-----YTDLEELLADEDVD 64 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH----------HHHHHHHHHTT-SEE-----ESSHHHHHHHTTES
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH----------HHHHHHHHHhc-ccc-----hhHHHHHHHhhcCC
Confidence 4899999999999888777655 689999999863 34443333322 111 223456664 4688
Q ss_pred EEecccc
Q 036924 284 VLIPAAL 290 (295)
Q Consensus 284 vlipaA~ 290 (295)
+++-|+.
T Consensus 65 ~V~I~tp 71 (120)
T PF01408_consen 65 AVIIATP 71 (120)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 8876654
No 169
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=93.64 E-value=0.13 Score=49.02 Aligned_cols=51 Identities=22% Similarity=0.185 Sum_probs=41.0
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCccc
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKG 265 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~ 265 (295)
.+..+|..+|.||.|.+.+..|...|++|+ |-|. +.++..++.++..++.+
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVt-V~dr----------~~~k~~~f~~~Ga~v~~ 83 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVT-VYDR----------TKDKCKEFQEAGARVAN 83 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEE-EEeC----------cHHHHHHHHHhchhhhC
Confidence 457899999999999999999999999998 6554 46677777766555544
No 170
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.63 E-value=0.21 Score=47.16 Aligned_cols=53 Identities=28% Similarity=0.328 Sum_probs=44.4
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+|..||.. ++++.+.+++|++|+|+|= ..||+-++.+|.++++.|. ++.++
T Consensus 137 ~PcTp~avi~----lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-~chs~ 190 (282)
T PRK14166 137 LPCTPLGVMK----LLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIK 190 (282)
T ss_pred cCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 4689877754 5556789999999999995 6789999999999999987 88875
No 171
>PLN02688 pyrroline-5-carboxylate reductase
Probab=93.57 E-value=0.27 Score=44.90 Aligned_cols=31 Identities=26% Similarity=0.248 Sum_probs=26.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCC----EEEEEe-cC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGG----KIVAVS-DI 238 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~----kvVaVs-D~ 238 (295)
+||+++|+|++|..+++.|.+.|. .|+ ++ |.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~-v~~~r 36 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRIS-TADDS 36 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEE-EEeCC
Confidence 579999999999999999999987 666 44 54
No 172
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.56 E-value=0.11 Score=46.59 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
++++|++|.|+|-|.||..-++.|.+.|++|+-|+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 35789999999999999999999999999998444
No 173
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.55 E-value=0.22 Score=47.32 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=45.4
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
..+|..|+. ++|++.+++++|++|+|+|= ..||+-++.+|.++++.|. +++++-
T Consensus 140 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-~chs~T 194 (294)
T PRK14187 140 IPCTPKGCL----YLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT-TVHSAT 194 (294)
T ss_pred cCcCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE-EeCCCC
Confidence 467888764 56677799999999999995 6789999999999999987 888753
No 174
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.51 E-value=0.07 Score=50.93 Aligned_cols=81 Identities=20% Similarity=0.347 Sum_probs=50.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCC-----HHHHHHHHHhcCCcccCC-CC--eeeC-CCC
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGID-----VPSLLKHVKEHRGVKGFS-GG--DSID-SNS 276 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD-----~~~l~~~~~~~g~~~~~~-~~--~~~~-~~~ 276 (295)
-++|+|+|.|..|+..|..++..|+.|+ +.|.+ ++.++ +.+.++...++|.+.+-. .. ..+. ..+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~-l~D~~-----~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVV-LKDIS-----PEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceE-EEeCC-----HHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 4699999999999999999999779988 77876 22222 111122222334443321 10 0122 223
Q ss_pred cc-ccCceEEecccccC
Q 036924 277 IL-IEDCDVLIPAALGG 292 (295)
Q Consensus 277 ~l-~~~~DvlipaA~~~ 292 (295)
+- -.+||+.|+|..||
T Consensus 77 ~~~l~~~DlVIEAv~E~ 93 (307)
T COG1250 77 LAALKDADLVIEAVVED 93 (307)
T ss_pred hhHhccCCEEEEecccc
Confidence 32 35899999999987
No 175
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.41 E-value=0.15 Score=50.84 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=35.0
Q ss_pred HHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 198 NEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 198 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.+++.++++++|+|.|.|.+|..+|+.|.++|++|+ ++|.+
T Consensus 8 ~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~-~~d~~ 48 (480)
T PRK01438 8 TSWHSDWQGLRVVVAGLGVSGFAAADALLELGARVT-VVDDG 48 (480)
T ss_pred hhcccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 345666789999999999999999999999999977 67653
No 176
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.38 E-value=0.27 Score=47.56 Aligned_cols=43 Identities=19% Similarity=0.396 Sum_probs=35.2
Q ss_pred HHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 196 LLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 196 ~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+|++.+.. .|.+|+|.|+|.+|..++++....|++|++++-+.
T Consensus 158 alk~~~~~-pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~ 200 (339)
T COG1064 158 ALKKANVK-PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSE 200 (339)
T ss_pred ehhhcCCC-CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 45544443 58899999999999999999999999999877653
No 177
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=93.31 E-value=0.17 Score=47.11 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=26.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 208 RFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+|+|+|+|++|+.+|+.|.+.|.+|+ +.|.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 58999999999999999999999987 45553
No 178
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.25 E-value=0.37 Score=35.91 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=35.2
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCCHHH
Q 036924 208 RFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPS 252 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD~~~ 252 (295)
||+|+|.|.+|..+|..|.+.|.+|. +.+.+..+. ..+|.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vt-li~~~~~~~--~~~~~~~ 42 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVT-LIERSDRLL--PGFDPDA 42 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEE-EEESSSSSS--TTSSHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEE-EEeccchhh--hhcCHHH
Confidence 68999999999999999999999997 777766665 5677654
No 179
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=93.25 E-value=0.27 Score=47.54 Aligned_cols=32 Identities=31% Similarity=0.544 Sum_probs=27.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHHC----CCEEEEEecC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEK----GGKIVAVSDI 238 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~----G~kvVaVsD~ 238 (295)
.||+|.|||.||+.+.|.|.+. ..++|||-|.
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~ 37 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL 37 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence 4899999999999999999874 5889988764
No 180
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.19 E-value=0.22 Score=46.98 Aligned_cols=54 Identities=28% Similarity=0.386 Sum_probs=45.6
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcH-HHHHHHHHHHHCCCEEEEEecCCc
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGN-VGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGn-VG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
..+|-+|+. .++++.+.++.|++++|+|-+| ||+-++.+|...++.|. |+.++.
T Consensus 136 ~PCTp~gi~----~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt-vcHs~T 190 (283)
T COG0190 136 LPCTPAGIM----TLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVT-VCHSRT 190 (283)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE-EEcCCC
Confidence 478988875 4566778999999999999766 79999999999999987 888864
No 181
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.16 E-value=0.29 Score=46.25 Aligned_cols=53 Identities=23% Similarity=0.339 Sum_probs=44.1
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+|..|+. +++++.+.+++|++|+|+|= ..||+-++.+|.++++.|. ++.++
T Consensus 137 ~PcTp~avi----~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt-ichs~ 190 (282)
T PRK14182 137 RPCTPAGVM----RMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVT-IAHSR 190 (282)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 467877765 45666789999999999995 6789999999999999876 78775
No 182
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=93.10 E-value=0.17 Score=45.17 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHH--HHCCCEEEEEecCCc
Q 036924 185 TGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLI--GEKGGKIVAVSDISG 240 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L--~~~G~kvVaVsD~~G 240 (295)
-||=|-+-.++..+.+|.+ +-..|+|+|.||.|++++.+- .+.|.+|+++-|.+.
T Consensus 64 ~GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~ 120 (211)
T COG2344 64 YGYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDP 120 (211)
T ss_pred CCccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCH
Confidence 4566666667766778877 556899999999999998654 367999999999874
No 183
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=93.09 E-value=0.11 Score=50.40 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=29.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
...+|+|+||||.|+..|+.|.++|..+++ +|+
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~-hsR 83 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLIC-HSR 83 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEe-cCc
Confidence 457999999999999999999999999984 443
No 184
>PRK07411 hypothetical protein; Validated
Probab=93.09 E-value=0.13 Score=50.50 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++..+|.|+|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567899999999999999999999998777788865
No 185
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=93.08 E-value=0.28 Score=45.64 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=27.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|+|++|+.+|+.|.+.|.+|+ +.|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 589999999999999999999999886 45553
No 186
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.07 E-value=0.13 Score=45.39 Aligned_cols=32 Identities=31% Similarity=0.540 Sum_probs=25.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
|+|+|+|.|-||..+|-.|+++|.+|++ .|.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g-~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIG-VDID 32 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEE-E-S-
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEE-EeCC
Confidence 6899999999999999999999999995 4554
No 187
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.06 E-value=0.25 Score=45.17 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=41.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEE--EEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeee-CCCCccccCce
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKI--VAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSI-DSNSILIEDCD 283 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kv--VaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~-~~~~~l~~~~D 283 (295)
+||.|+|+|++|+.+++.|.+.|..+ +.|+|.+ .+.+.+..++. ++.+.. ++.+++ .+||
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~----------~~~~~~l~~~~------~~~~~~~~~~~~~-~~aD 63 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRN----------AQIAARLAERF------PKVRIAKDNQAVV-DRSD 63 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCC----------HHHHHHHHHHc------CCceEeCCHHHHH-HhCC
Confidence 47999999999999999999887533 3345542 33443333322 122222 233443 4689
Q ss_pred EEecccc
Q 036924 284 VLIPAAL 290 (295)
Q Consensus 284 vlipaA~ 290 (295)
|++-|..
T Consensus 64 vVilav~ 70 (258)
T PRK06476 64 VVFLAVR 70 (258)
T ss_pred EEEEEeC
Confidence 9887765
No 188
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=93.05 E-value=0.056 Score=54.22 Aligned_cols=30 Identities=27% Similarity=0.409 Sum_probs=27.9
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEE
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIV 233 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvV 233 (295)
++|+||+|+|+|+.|+.-|.-|...|.+|+
T Consensus 34 LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 34 LKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred hCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 799999999999999998888888999887
No 189
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.04 E-value=0.6 Score=44.37 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=43.5
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHH----CCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGE----KGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~----~G~kvVaVsD~~ 239 (295)
..+|..|+ .+.+++.+++++|++|+|+|= ..||+-++.+|.+ +++.|. ++.++
T Consensus 139 ~PcTp~ai----l~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt-~~hs~ 196 (295)
T PRK14174 139 VSCTPYGI----LELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT-ICHSA 196 (295)
T ss_pred CCCCHHHH----HHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE-EEeCC
Confidence 56898876 566777789999999999995 6789999999987 688876 67664
No 190
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.03 E-value=0.11 Score=42.72 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=29.7
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.+||+|.|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999999998666688875
No 191
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.99 E-value=0.091 Score=50.09 Aligned_cols=54 Identities=20% Similarity=0.394 Sum_probs=42.9
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceE----ECCCCCCHHHHHHHHH
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAI----KNSKGIDVPSLLKHVK 258 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~i----y~~~GlD~~~l~~~~~ 258 (295)
|+|++|+|+|+|+=|.+-|..|.+.|..|+ |.=..|+. -.++||++..+.+..+
T Consensus 16 LkgK~iaIIGYGsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dGf~V~~v~ea~k 73 (338)
T COG0059 16 LKGKKVAIIGYGSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDGFKVYTVEEAAK 73 (338)
T ss_pred hcCCeEEEEecChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcCCEeecHHHHhh
Confidence 899999999999999999999999999976 76666654 3567887665555443
No 192
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.98 E-value=0.1 Score=50.05 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=28.7
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|.+|+..|..+...|+.|+ +.|.+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~-l~D~~ 39 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVV-AWDPA 39 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 589999999999999999999999998 66653
No 193
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=92.95 E-value=0.22 Score=46.49 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=32.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHC------C---CEEEEEecCCceEECCC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEK------G---GKIVAVSDISGAIKNSK 246 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~------G---~kvVaVsD~~G~iy~~~ 246 (295)
+...|+|.|.|+||+++...+... + +.||+|+|+.+.+...+
T Consensus 2 k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD 52 (364)
T KOG0455|consen 2 KKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKD 52 (364)
T ss_pred ccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccc
Confidence 346799999999999998776532 2 78999999988765443
No 194
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.92 E-value=0.28 Score=46.00 Aligned_cols=32 Identities=38% Similarity=0.539 Sum_probs=27.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|++|..+|..|.+.|..|+ +.|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~-~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVV-LIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEE-EEECC
Confidence 589999999999999999999999887 45543
No 195
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=92.87 E-value=0.2 Score=47.98 Aligned_cols=35 Identities=34% Similarity=0.665 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+.|+-++|-|||+||..+|..|.-.|++|+ |++.+
T Consensus 212 ~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Vi-vTEiD 246 (434)
T KOG1370|consen 212 IAGKVAVVCGYGDVGKGCAQALKGFGARVI-VTEID 246 (434)
T ss_pred ecccEEEEeccCccchhHHHHHhhcCcEEE-EeccC
Confidence 789999999999999999999999999998 88775
No 196
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=92.87 E-value=0.26 Score=46.23 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=27.2
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 208 RFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+|+|+|.|++|..+|+.|.+.|.+|+ +.|.+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~-v~d~~ 33 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQ-VFDVN 33 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 79999999999999999999999876 55553
No 197
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.87 E-value=0.19 Score=43.72 Aligned_cols=32 Identities=28% Similarity=0.385 Sum_probs=28.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 208 RFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
||+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998645588876
No 198
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=92.86 E-value=0.21 Score=40.48 Aligned_cols=73 Identities=29% Similarity=0.357 Sum_probs=43.5
Q ss_pred EEEEEc-CcHHHHHHHHHHHHC-CCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCcc-ccCceE
Q 036924 208 RFVIQG-FGNVGSWAARLIGEK-GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSIL-IEDCDV 284 (295)
Q Consensus 208 ~vaIqG-fGnVG~~~a~~L~~~-G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l-~~~~Dv 284 (295)
||+|.| .|.||+.++++|.++ .+.++.+..++. ..|..+..... ....+.... +...+.- -.++|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~----~~g~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~Dv 69 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR----SAGKPLSEVFP------HPKGFEDLS-VEDADPEELSDVDV 69 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT----TTTSBHHHTTG------GGTTTEEEB-EEETSGHHHTTESE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc----ccCCeeehhcc------cccccccee-EeecchhHhhcCCE
Confidence 799999 999999999999875 578888777653 24555444322 111111111 1111111 269999
Q ss_pred Eeccccc
Q 036924 285 LIPAALG 291 (295)
Q Consensus 285 lipaA~~ 291 (295)
++-|.-.
T Consensus 70 vf~a~~~ 76 (121)
T PF01118_consen 70 VFLALPH 76 (121)
T ss_dssp EEE-SCH
T ss_pred EEecCch
Confidence 9988643
No 199
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.79 E-value=0.16 Score=50.80 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++++|+|.|+|.-|..+|++|.++|++|+ ++|.+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~-~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQA-LTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEE-EEcCC
Confidence 468899999999999999999999999988 78875
No 200
>PLN02712 arogenate dehydrogenase
Probab=92.77 E-value=0.27 Score=51.65 Aligned_cols=31 Identities=29% Similarity=0.543 Sum_probs=27.8
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCEEEEE
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaV 235 (295)
+.++|+|+|+|++|+.+|+.|.+.|.+|+++
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~ 81 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAH 81 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEE
Confidence 4579999999999999999999999998754
No 201
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=92.74 E-value=0.29 Score=46.19 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEE
Q 036924 184 ATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIV 233 (295)
Q Consensus 184 aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvV 233 (295)
-|+|-.+--+.+..+.+|+++++.+|+|.|. |.+|+.+|+.|.-++.++.
T Consensus 145 ~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ 195 (351)
T COG5322 145 HTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKE 195 (351)
T ss_pred cchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEE
Confidence 4888777777777778999999999999998 9999999999998876665
No 202
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.74 E-value=0.39 Score=45.50 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=27.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
.++|+|+|.|++|..+|..|.+.|..|. +.+.
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~-~~~r 35 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVR-LWAR 35 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEE-EEeC
Confidence 4689999999999999999999999886 4444
No 203
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.73 E-value=0.42 Score=44.53 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=42.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCC----EEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeee-CCCCccccC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGG----KIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSI-DSNSILIED 281 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~----kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~-~~~~~l~~~ 281 (295)
++|+++|+||+|+.+++-|.+.|. .|+ ++|.+ .+.+.+..++.| .+.. ++.++. .+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~-v~~r~----------~~~~~~l~~~~g-------~~~~~~~~e~~-~~ 63 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQII-CSDLN----------VSNLKNASDKYG-------ITITTNNNEVA-NS 63 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEE-EECCC----------HHHHHHHHHhcC-------cEEeCCcHHHH-hh
Confidence 589999999999999999998884 344 55543 344444333222 2222 233443 48
Q ss_pred ceEEeccccc
Q 036924 282 CDVLIPAALG 291 (295)
Q Consensus 282 ~DvlipaA~~ 291 (295)
|||+|-|...
T Consensus 64 aDiIiLavkP 73 (272)
T PRK12491 64 ADILILSIKP 73 (272)
T ss_pred CCEEEEEeCh
Confidence 8999877543
No 204
>PLN02712 arogenate dehydrogenase
Probab=92.70 E-value=0.21 Score=52.45 Aligned_cols=38 Identities=24% Similarity=0.408 Sum_probs=32.7
Q ss_pred cCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 200 HGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 200 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++.++++++|+|+|+|++|+.+|+.|.+.|.+|++ .|.
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~-~dr 400 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLA-YSR 400 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEE-EEC
Confidence 35568899999999999999999999999999884 444
No 205
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=92.66 E-value=0.33 Score=46.95 Aligned_cols=52 Identities=8% Similarity=0.145 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 188 GVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 188 Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
++.++...+++.+ .++++++|.|+|.|.+|+-+++.|.++|++-|.|+..+-
T Consensus 157 Sv~s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 157 TIESVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CHHHHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3444445555655 458999999999999999999999999976566888764
No 206
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=92.62 E-value=0.1 Score=50.42 Aligned_cols=35 Identities=23% Similarity=0.391 Sum_probs=32.3
Q ss_pred cCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEE
Q 036924 200 HGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVA 234 (295)
Q Consensus 200 ~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVa 234 (295)
+|.++.|||++|.|||.+|+.+|+.+...|.++|+
T Consensus 140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~ 174 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIG 174 (406)
T ss_pred eeeEEeccEEEEeecccchHHHHHHHHhcCceEEe
Confidence 36679999999999999999999999999999995
No 207
>PRK07680 late competence protein ComER; Validated
Probab=92.56 E-value=0.39 Score=44.31 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=26.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCC---EEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGG---KIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~---kvVaVsD~~ 239 (295)
++|+|+|.|++|+.+++.|.+.|. .-|.|.|.+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~ 36 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRT 36 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence 479999999999999999999884 224466653
No 208
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.54 E-value=0.21 Score=49.24 Aligned_cols=32 Identities=31% Similarity=0.621 Sum_probs=28.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCC-CEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKG-GKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G-~kvVaVsD~~ 239 (295)
++|.|+|.|+||+.+|+.|++.| ..|. |+|.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEE-EEeCC
Confidence 58999999999999999999999 7877 78875
No 209
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=92.53 E-value=0.17 Score=45.86 Aligned_cols=29 Identities=34% Similarity=0.603 Sum_probs=27.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEE
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaV 235 (295)
++++|.|.|.||+.+|+.|.+.|..|+.|
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~I 29 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLI 29 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEE
Confidence 58999999999999999999999999854
No 210
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.47 E-value=0.38 Score=45.44 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=43.9
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHH--CCCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGE--KGGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~--~G~kvVaVsD~~ 239 (295)
..+|..|+.. ++++.+++++|++|+|+|= ..||+-++.+|.+ +++.|. ++.++
T Consensus 138 ~PcTp~av~~----ll~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVt-vchs~ 193 (284)
T PRK14193 138 LPCTPRGIVH----LLRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVT-LCHTG 193 (284)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEE-EeCCC
Confidence 4789887754 4556789999999999995 7799999999998 788886 88875
No 211
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.41 E-value=0.4 Score=48.43 Aligned_cols=32 Identities=22% Similarity=0.066 Sum_probs=28.4
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|++|+..|..|...|..|+ +.|.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~-v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVA-VFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEE-EEeCC
Confidence 489999999999999999999999987 66663
No 212
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=92.39 E-value=0.35 Score=46.05 Aligned_cols=35 Identities=23% Similarity=0.148 Sum_probs=29.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHH-HCCCEEEEEecCC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIG-EKGGKIVAVSDIS 239 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~-~~G~kvVaVsD~~ 239 (295)
+..||+|+|.|++|...+..+. ..+..+++|+|.+
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid 38 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGID 38 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence 4579999999999998666665 4579999999885
No 213
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.30 E-value=0.15 Score=48.70 Aligned_cols=37 Identities=32% Similarity=0.359 Sum_probs=30.5
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEecCCce
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGG-KIVAVSDISGA 241 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~-kvVaVsD~~G~ 241 (295)
++.+||+|+|.|+||+.+|..+...|. . +.+.|.+..
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~~~ 41 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIVKN 41 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCCc
Confidence 345799999999999999999998885 6 558888543
No 214
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.28 E-value=0.54 Score=43.58 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=27.0
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCC----CEEEEEecC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEKG----GKIVAVSDI 238 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G----~kvVaVsD~ 238 (295)
+.+||+++|.|++|+.+++.|.+.| .+|+ ++|.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~-v~~r 38 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQIT-VSNR 38 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEE-EECC
Confidence 4579999999999999999999987 4444 5554
No 215
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=92.18 E-value=0.81 Score=45.54 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=29.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHH-CCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGE-KGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~-~G~kvVaVsD~~ 239 (295)
.||+|-|||.+|+.++|.+.+ .+.+||+|-|..
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~ 119 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF 119 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC
Confidence 499999999999999999875 689999987753
No 216
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.18 E-value=0.45 Score=45.06 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=44.0
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHC----CCEEEEEecCCc
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEK----GGKIVAVSDISG 240 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~----G~kvVaVsD~~G 240 (295)
..+|..|+.. +|++.+++++|++|+|+|= ..||+-++.+|.++ ++.|. ++.++.
T Consensus 133 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVt-vchs~T 191 (287)
T PRK14181 133 IPCTPAGIIE----LLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVT-LLHSQS 191 (287)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEE-EeCCCC
Confidence 4688887754 4566789999999999995 67899999999998 78876 787753
No 217
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.10 E-value=0.41 Score=47.29 Aligned_cols=74 Identities=26% Similarity=0.371 Sum_probs=47.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC---------ceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCc
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS---------GAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSI 277 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~---------G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 277 (295)
.||+|+|+|-||.-+|-.++.+|++|+|+ |.+ |..|=.+ .+.+++++..-+.|.+. ..+.-+-
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~-DIn~~~Vd~ln~G~~~i~e-~~~~~~v~~~v~~g~lr------aTtd~~~ 81 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGV-DINQKKVDKLNRGESYIEE-PDLDEVVKEAVESGKLR------ATTDPEE 81 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeE-eCCHHHHHHHhCCcceeec-CcHHHHHHHHHhcCCce------EecChhh
Confidence 89999999999999999999999999985 432 4443221 34455444333444442 1122233
Q ss_pred cccCceEEeccc
Q 036924 278 LIEDCDVLIPAA 289 (295)
Q Consensus 278 l~~~~DvlipaA 289 (295)
+. +||++|=|-
T Consensus 82 l~-~~dv~iI~V 92 (436)
T COG0677 82 LK-ECDVFIICV 92 (436)
T ss_pred cc-cCCEEEEEe
Confidence 44 899887653
No 218
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=92.07 E-value=0.51 Score=46.56 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=28.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHC---CCEEEEEecC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEK---GGKIVAVSDI 238 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~---G~kvVaVsD~ 238 (295)
.||+|-|||-+|+.+.|.|.+. ...|++|-|.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~ 95 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDT 95 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCC
Confidence 6999999999999999999876 4789988774
No 219
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=92.05 E-value=0.4 Score=46.47 Aligned_cols=54 Identities=24% Similarity=0.245 Sum_probs=44.9
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
...+|..|+.. +|++.+.+++|++|+|+|= ..||+-++.+|.++++.|. ++.++
T Consensus 193 ~~PCTp~avi~----LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT-icHs~ 247 (345)
T PLN02897 193 FVSCTPKGCVE----LLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS-TVHAF 247 (345)
T ss_pred CcCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEE-EEcCC
Confidence 45789888754 4567789999999999995 6689999999999999886 77764
No 220
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=92.03 E-value=0.26 Score=48.42 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++..+|.|+|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 567899999999999999999999998766688865
No 221
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=92.01 E-value=0.42 Score=47.24 Aligned_cols=45 Identities=24% Similarity=0.454 Sum_probs=34.3
Q ss_pred HHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEecCC
Q 036924 193 MEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGG-KIVAVSDIS 239 (295)
Q Consensus 193 ~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~-kvVaVsD~~ 239 (295)
++.+.+.++ ++.+++|+|+|.|.+|+.+++.|...|+ +|+ |.+.+
T Consensus 168 v~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~-v~~rs 213 (417)
T TIGR01035 168 VELAERIFG-SLKGKKALLIGAGEMGELVAKHLLRKGVGKIL-IANRT 213 (417)
T ss_pred HHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHHCCCCEEE-EEeCC
Confidence 344444444 3789999999999999999999999994 554 66664
No 222
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.96 E-value=0.28 Score=48.21 Aligned_cols=35 Identities=23% Similarity=0.427 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++++|.|.|.|..|..+|++|.+.|++|+ ++|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~-~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVT-VNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 578999999999999999999999999987 67864
No 223
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.93 E-value=0.53 Score=43.02 Aligned_cols=32 Identities=31% Similarity=0.293 Sum_probs=25.7
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCC---CEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKG---GKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G---~kvVaVsD~~ 239 (295)
++|+|+|+|++|+.+++.|.+.| ..|. +.|.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~-v~~r~ 37 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDII-VSDPS 37 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEE-EEcCC
Confidence 58999999999999999999888 3443 55553
No 224
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.93 E-value=0.2 Score=47.19 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=28.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|.+|..+|..|.++|.+|+ +.|.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~-v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVR-LWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeE-EEeCC
Confidence 479999999999999999999999988 55654
No 225
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=91.88 E-value=0.56 Score=43.82 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=27.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|++|..+|..|.+.|..|. +.|.+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~-~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVT-LWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEE-EEECC
Confidence 479999999999999999999999875 55553
No 226
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=91.84 E-value=0.36 Score=45.65 Aligned_cols=32 Identities=22% Similarity=0.307 Sum_probs=28.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+||+++|+|+.|+..|+.|.+.|+.|. |.|.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~-v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVT-VYNRT 32 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEE-EEeCC
Confidence 489999999999999999999999987 67764
No 227
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.75 E-value=0.57 Score=43.95 Aligned_cols=50 Identities=22% Similarity=0.442 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 186 GRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 186 g~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+.|...+++ ..+.+++++++.|.|.|.+|++++..|.+.|++-|.|.+.+
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 566655554 34566889999999999999999999999999744477664
No 228
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=91.73 E-value=0.52 Score=44.16 Aligned_cols=66 Identities=21% Similarity=0.194 Sum_probs=43.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCC----CEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCccccCc
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKG----GKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDC 282 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G----~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l~~~~ 282 (295)
++|.++|+||+|+.++.-|.+.| ..|+ |++.+ .+.+.+..++.|. . ..++.+-+..++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~-v~~~~----------~e~~~~l~~~~g~------~-~~~~~~~~~~~a 63 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEII-VTNRS----------EEKRAALAAEYGV------V-TTTDNQEAVEEA 63 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEE-EeCCC----------HHHHHHHHHHcCC------c-ccCcHHHHHhhC
Confidence 58999999999999999999999 3555 88875 2343334443322 1 123333455678
Q ss_pred eEEecccc
Q 036924 283 DVLIPAAL 290 (295)
Q Consensus 283 DvlipaA~ 290 (295)
|+++.|--
T Consensus 64 dvv~LavK 71 (266)
T COG0345 64 DVVFLAVK 71 (266)
T ss_pred CEEEEEeC
Confidence 88887643
No 229
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=91.73 E-value=0.54 Score=44.17 Aligned_cols=33 Identities=39% Similarity=0.409 Sum_probs=27.2
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCC--EEEEEecCC
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEKGG--KIVAVSDIS 239 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~G~--kvVaVsD~~ 239 (295)
-++|+|+|+|++|..+++.|.+.|. +|+ +.|.+
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~-~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIV-GADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEE-EEECC
Confidence 3689999999999999999999885 555 55653
No 230
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.67 E-value=0.3 Score=46.03 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=29.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.+++|+|+|.|++|+.+|+.|.+.|..|. +.|++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVR-VWSRR 36 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 46899999999999999999999999987 56554
No 231
>PRK08507 prephenate dehydrogenase; Validated
Probab=91.64 E-value=0.43 Score=44.12 Aligned_cols=31 Identities=29% Similarity=0.304 Sum_probs=25.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCC--EEEEEecC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGG--KIVAVSDI 238 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~--kvVaVsD~ 238 (295)
++|+|+|+|++|+.+++.|.+.|. +|+ +.|.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~-~~d~ 33 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVY-GYDH 33 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEE-EEcC
Confidence 479999999999999999999885 454 3444
No 232
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=91.56 E-value=0.63 Score=43.86 Aligned_cols=51 Identities=24% Similarity=0.322 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 185 TGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
=+.|...+++ ..+.+++++++.|.|.|..+++++-.|.+.|++-|.|.+++
T Consensus 107 D~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 107 DGTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CHHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3566665554 45677899999999999999999999999998666688774
No 233
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=91.56 E-value=0.16 Score=53.84 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=49.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCC-----HHHHHHHHHhcCCcccCC------CCeeeCCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGID-----VPSLLKHVKEHRGVKGFS------GGDSIDSN 275 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD-----~~~l~~~~~~~g~~~~~~------~~~~~~~~ 275 (295)
++|+|+|.|.+|..+|..+...|+.|+ +.|.+. +.++ +.+.++...+.|.+.... .-+..+.-
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~-l~d~~~-----~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 409 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTV-LKDATP-----AGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY 409 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEE-EecCCH-----HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence 689999999999999999999999998 777652 2222 122222222344443210 01111111
Q ss_pred CccccCceEEecccccC
Q 036924 276 SILIEDCDVLIPAALGG 292 (295)
Q Consensus 276 ~~l~~~~DvlipaA~~~ 292 (295)
+-+ .+||++|+|..|+
T Consensus 410 ~~~-~~aDlViEAv~E~ 425 (737)
T TIGR02441 410 SGF-KNADMVIEAVFED 425 (737)
T ss_pred HHh-ccCCeehhhcccc
Confidence 222 5999999999886
No 234
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=91.50 E-value=0.39 Score=47.45 Aligned_cols=32 Identities=19% Similarity=0.412 Sum_probs=28.5
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|.||..+|..|.++|..|++ .|.+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~-~D~~ 35 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIG-VDIN 35 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEE-EeCC
Confidence 6899999999999999999999999984 4553
No 235
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.50 E-value=0.33 Score=47.76 Aligned_cols=36 Identities=22% Similarity=0.508 Sum_probs=32.1
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++++++|+|.|.|.+|..+|+.|.+.|++|+ ++|.+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~-~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVI-LTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 4678999999999999999999999999987 66664
No 236
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.41 E-value=0.7 Score=39.19 Aligned_cols=72 Identities=21% Similarity=0.314 Sum_probs=42.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCe-----eeCCC--Ccccc
Q 036924 208 RFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGD-----SIDSN--SILIE 280 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~-----~~~~~--~~l~~ 280 (295)
+|+|.|.||.|.++|..|.++|.+|. +...+ .+.+.++.+.+.....+++.+ .++.+ +.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~-l~~~~----------~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~-~ 68 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVT-LWGRD----------EEQIEEINETRQNPKYLPGIKLPENIKATTDLEEAL-E 68 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEE-EETSC----------HHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHH-T
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEE-EEecc----------HHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHh-C
Confidence 68999999999999999999998876 44443 234444444333222233221 22221 223 4
Q ss_pred CceEEeccccc
Q 036924 281 DCDVLIPAALG 291 (295)
Q Consensus 281 ~~DvlipaA~~ 291 (295)
++|++|-|...
T Consensus 69 ~ad~IiiavPs 79 (157)
T PF01210_consen 69 DADIIIIAVPS 79 (157)
T ss_dssp T-SEEEE-S-G
T ss_pred cccEEEecccH
Confidence 78998876543
No 237
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.33 E-value=0.31 Score=48.47 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+.+++|.|.|+|.-|..+|++|.++|++|. ++|.+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~ 46 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVT-AFDKK 46 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHHCCCEEE-EECCC
Confidence 567899999999999999999999999876 78864
No 238
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.33 E-value=0.2 Score=52.90 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=48.7
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCC-HHHHHHHHHhcCCcccCC-CC--eeeC-CCCcc-cc
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGID-VPSLLKHVKEHRGVKGFS-GG--DSID-SNSIL-IE 280 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD-~~~l~~~~~~~g~~~~~~-~~--~~~~-~~~~l-~~ 280 (295)
++|+|+|.|.+|..+|..+...|+.|+ +.|.+-...+ .|++ +.+.++...+.|.+..-. .. ..++ ..++- -.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d~~~~~l~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 391 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIV-MKDINQHSLD-LGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGFD 391 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEE-EEeCCHHHHH-HHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHhc
Confidence 589999999999999999999999998 7776521110 1111 112222222334332210 00 0111 11221 26
Q ss_pred CceEEecccccC
Q 036924 281 DCDVLIPAALGG 292 (295)
Q Consensus 281 ~~DvlipaA~~~ 292 (295)
+||++|+|..|+
T Consensus 392 ~aDlViEav~E~ 403 (714)
T TIGR02437 392 NVDIVVEAVVEN 403 (714)
T ss_pred CCCEEEEcCccc
Confidence 999999999886
No 239
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.32 E-value=0.59 Score=44.56 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=28.3
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCC--EEEEEecCC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEKGG--KIVAVSDIS 239 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G~--kvVaVsD~~ 239 (295)
+++||+|+|.|+||+.+|..|...|. .++ +.|.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~-L~D~~ 40 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELV-IIDIN 40 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence 56899999999999999999988885 444 77764
No 240
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.30 E-value=0.57 Score=44.58 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=43.1
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHC----CCEEEEEecCC
Q 036924 182 DAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEK----GGKIVAVSDIS 239 (295)
Q Consensus 182 ~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~----G~kvVaVsD~~ 239 (295)
..+|..||. ++|++.|.+++|++|+|+|= ..||+-++.+|.++ ++.|. ++.++
T Consensus 141 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVt-v~hs~ 198 (297)
T PRK14168 141 LPCTPAGIQ----EMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVT-IVHTR 198 (297)
T ss_pred cCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEE-EecCC
Confidence 468877765 45566799999999999994 77999999999988 67776 77775
No 241
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.27 E-value=0.21 Score=52.78 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=29.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|.+|..+|..+...|+.|+ +.|.+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~-l~d~~ 345 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVI-MKDIN 345 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEE-EEeCC
Confidence 589999999999999999999999998 77765
No 242
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=91.26 E-value=0.21 Score=46.25 Aligned_cols=36 Identities=25% Similarity=0.556 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++..+|+|.|.|.||+|+++.|.+-|..=+.+.|-+
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D 63 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMD 63 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecc
Confidence 678899999999999999999999996555566654
No 243
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.11 E-value=0.64 Score=44.14 Aligned_cols=55 Identities=27% Similarity=0.322 Sum_probs=44.2
Q ss_pred CCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC-cHHHHHHHHHHHHC----CCEEEEEecCCc
Q 036924 181 RDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF-GNVGSWAARLIGEK----GGKIVAVSDISG 240 (295)
Q Consensus 181 r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~----G~kvVaVsD~~G 240 (295)
-..+|..||. ++|++.+.+++|++|+|+|= ..||+-++.+|.++ ++.|. ++.++.
T Consensus 136 ~~PcTp~av~----~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~T 195 (293)
T PRK14185 136 FVSATPNGIL----ELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT-VCHSRS 195 (293)
T ss_pred CCCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE-EecCCC
Confidence 3578887765 45667789999999999995 67899999999988 57876 777754
No 244
>PRK14851 hypothetical protein; Provisional
Probab=91.08 E-value=0.34 Score=51.06 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++.+|+|.|.|.||+++++.|...|..=+-+.|-+
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 578999999999999999999999997655677765
No 245
>PRK08328 hypothetical protein; Provisional
Probab=91.07 E-value=0.31 Score=44.36 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++.+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 578899999999999999999999998666688864
No 246
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=91.03 E-value=0.34 Score=45.46 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=28.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|+|++|+.+|+.|.+.|.+|+ +.|.+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~-v~dr~ 32 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVV-GYDRN 32 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEE-EEECC
Confidence 479999999999999999999999986 56664
No 247
>PLN02256 arogenate dehydrogenase
Probab=90.90 E-value=0.59 Score=44.36 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
.+.++|+|+|+|++|+.+++.|.+.|.+|+++.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d 66 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATS 66 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEE
Confidence 477899999999999999999999998888543
No 248
>PRK07877 hypothetical protein; Provisional
Probab=90.89 E-value=0.29 Score=51.85 Aligned_cols=84 Identities=12% Similarity=0.233 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCC--EEEEEecCCc--------eEECCCCCCHHHHHHHHHhcCCcccCCCCe---
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGG--KIVAVSDISG--------AIKNSKGIDVPSLLKHVKEHRGVKGFSGGD--- 270 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~--kvVaVsD~~G--------~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~--- 270 (295)
++..+|+|.|.| ||+++|..|...|. +++ +.|.+- -+|..+-+-..++...+++-..+..+-..+
T Consensus 105 L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~-lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 105 LGRLRIGVVGLS-VGHAIAHTLAAEGLCGELR-LADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HhcCCEEEEEec-HHHHHHHHHHHccCCCeEE-EEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 688999999999 99999999999994 554 787652 123333333333333333222222221111
Q ss_pred -eeCCCCcc--ccCceEEeccc
Q 036924 271 -SIDSNSIL--IEDCDVLIPAA 289 (295)
Q Consensus 271 -~~~~~~~l--~~~~DvlipaA 289 (295)
.++.+.+- -.+|||+|+|.
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~ 204 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEEC 204 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECC
Confidence 22322221 24799999996
No 249
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=90.74 E-value=0.8 Score=43.05 Aligned_cols=51 Identities=25% Similarity=0.208 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 185 TGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
=+.|...+++. .+.++++++|.|.|.|-++++++..|.+.|++-|.|.+++
T Consensus 110 D~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 160 (283)
T PRK14027 110 DVSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD 160 (283)
T ss_pred CHHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 46677666653 3345778999999999999999999999998766688764
No 250
>PRK07340 ornithine cyclodeaminase; Validated
Probab=90.61 E-value=1.5 Score=41.56 Aligned_cols=107 Identities=18% Similarity=0.170 Sum_probs=58.5
Q ss_pred ccCccccCCCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHH-CCCEEEEEecCCceEECCC
Q 036924 168 VTGKPIDLGGSLGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGE-KGGKIVAVSDISGAIKNSK 246 (295)
Q Consensus 168 ~tGkp~~~GG~~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-~G~kvVaVsD~~G~iy~~~ 246 (295)
.||.|+.+ .+...-|+.=.+.+--.+.+.+.. ...++++|.|.|..|+..++.+.. .+.+-|.|.+.+
T Consensus 91 ~tG~p~a~---~d~~~lT~~RTaA~sala~~~La~-~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~------- 159 (304)
T PRK07340 91 ATGERLFL---LDGPTVTGRRTAAVSLLAARTLAP-APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT------- 159 (304)
T ss_pred CCCcEEEE---EcChhHHHHHHHHHHHHHHHHhCC-CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------
Confidence 37887642 222233333222222223333332 356899999999999999999965 676666677664
Q ss_pred CCCHHHHHHHHHhcCCcccCCCCeeeCCCCccccCceEEeccccc
Q 036924 247 GIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLIPAALG 291 (295)
Q Consensus 247 GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l~~~~DvlipaA~~ 291 (295)
.++..++.++-+.. ++ ....-+.++.+ .++||+|=|+..
T Consensus 160 ---~~~a~~~a~~~~~~-~~-~~~~~~~~~av-~~aDiVitaT~s 198 (304)
T PRK07340 160 ---AASAAAFCAHARAL-GP-TAEPLDGEAIP-EAVDLVVTATTS 198 (304)
T ss_pred ---HHHHHHHHHHHHhc-CC-eeEECCHHHHh-hcCCEEEEccCC
Confidence 33444443332211 11 11111223344 489999987754
No 251
>PRK06153 hypothetical protein; Provisional
Probab=90.53 E-value=0.17 Score=49.86 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=31.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++.||+|+|.|.+|++++..|.+.|..=+.+.|.+
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 578999999999999999999999997555588875
No 252
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.48 E-value=0.44 Score=47.76 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+.+++|.|.|+|..|..+|++|.++|++|+ ++|.+
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~ 47 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVV-VADDN 47 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence 678899999999999999999999999766 78864
No 253
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.45 E-value=0.95 Score=43.53 Aligned_cols=32 Identities=34% Similarity=0.416 Sum_probs=28.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 208 RFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+|+|.|.|.+|.-++..+.-.|+..|-++|.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~ 202 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRS 202 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 99999999999999988888997766677874
No 254
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=90.45 E-value=0.32 Score=43.20 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++.++|.|.|.|.+|..+++.|...|..=+.+.|.+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 678999999999999999999999998777788865
No 255
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=90.41 E-value=2.6 Score=39.46 Aligned_cols=50 Identities=8% Similarity=-0.001 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 185 TGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 185 Tg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-++|+..+++ ..+.+ .+++|.|.|.|..+++++..|.+.|++-|.|.+++
T Consensus 106 D~~Gf~~~L~----~~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~ 155 (272)
T PRK12550 106 DYIAIAKLLA----SYQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN 155 (272)
T ss_pred CHHHHHHHHH----hcCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4566666654 33554 35699999999999999999999998755577774
No 256
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.35 E-value=0.48 Score=42.38 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=26.9
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 207 QRFVIQG-FGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 207 ~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+||+|+| .|++|+.+++.|.+.|.+|+ +.+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSR 32 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEc
Confidence 4799997 99999999999999999887 4454
No 257
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.27 E-value=0.89 Score=42.94 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=27.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++|+|+|.|++|..++..|.+.|..|. +.+.
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~-l~~r 31 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVN-LWGR 31 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEE-EEec
Confidence 479999999999999999999998886 5554
No 258
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.19 E-value=0.45 Score=47.81 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
+++++|.|.|+|..|..+|++|.++|++|. ++|.+-
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLR-VADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EEcCCC
Confidence 567899999999999999999999999987 788753
No 259
>PRK05717 oxidoreductase; Validated
Probab=90.18 E-value=0.62 Score=41.70 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 202 KNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
.+++|+++.|.|- |.+|+++|+.|.++|++|+. .|.
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~-~~~ 42 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVL-ADL 42 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEE-EcC
Confidence 4588999999995 99999999999999999984 443
No 260
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.18 E-value=0.49 Score=47.62 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+++|+|.|+|..|..++++|...|++|+ ++|.+
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~-~~D~~ 44 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPT-VCDDD 44 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 467899999999999999999999999988 68854
No 261
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=90.14 E-value=1.2 Score=36.62 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=53.8
Q ss_pred CCCCCchHHHHHHHHHHHHHH-cCCCCCCCEEEEEc--------CcHHHHHHHHHHHHCCCEEEEEecCCceEE
Q 036924 179 LGRDAATGRGVLFAMEALLNE-HGKNIAGQRFVIQG--------FGNVGSWAARLIGEKGGKIVAVSDISGAIK 243 (295)
Q Consensus 179 ~~r~~aTg~Gv~~~~~~~l~~-~g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~G~kvVaVsD~~G~iy 243 (295)
.|+..+|-|....+.+.+.+. ....++...|-|.| .|.-...+.+.|++.|.+|+-|.|...--+
T Consensus 38 kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpiPh 111 (114)
T TIGR03628 38 ADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPH 111 (114)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 567889999998888888873 34567889999999 678788999999999999999999865433
No 262
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=90.13 E-value=0.46 Score=44.57 Aligned_cols=32 Identities=25% Similarity=0.465 Sum_probs=28.4
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|+|++|+.+|+.|.+.|..|+ |.|.+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~dr~ 32 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVV-GYDVN 32 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEE-EEECC
Confidence 379999999999999999999999987 67764
No 263
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.12 E-value=0.47 Score=47.04 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++++|.|.|+|.-|..+|++|.++|++|. ++|.+
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~-~~D~~ 41 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEVI-AWDDN 41 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EECCC
Confidence 578899999999999999999999999876 78864
No 264
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.05 E-value=0.4 Score=42.55 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=32.2
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++..+|.|.|.|.+|..+++.|...|.+=+.+.|.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 578899999999999999999999998766688765
No 265
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=90.05 E-value=0.43 Score=46.05 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++.++|+|+|.|.+|+.+|+.|...|..=+.+.|.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 678999999999999999999999998555688875
No 266
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.03 E-value=1 Score=41.91 Aligned_cols=30 Identities=20% Similarity=0.335 Sum_probs=25.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCC----CEEEEEe
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKG----GKIVAVS 236 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G----~kvVaVs 236 (295)
.+|+|+|+|++|+.+++.|.+.| .+|+.+.
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~ 35 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYS 35 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEe
Confidence 47999999999999999999888 5676443
No 267
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.99 E-value=0.56 Score=37.00 Aligned_cols=30 Identities=37% Similarity=0.529 Sum_probs=24.5
Q ss_pred EEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 209 FVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 209 vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
|+|.|+|.+|+.+++.|.+.+.+|+ +.|.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vv-vid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVV-VIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEE-EEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEE-EEECC
Confidence 6899999999999999999777888 45543
No 268
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=89.89 E-value=0.34 Score=51.16 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=27.8
Q ss_pred CEEEEEcCcHHHHHHHHHHH-HCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIG-EKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~-~~G~kvVaVsD~~ 239 (295)
++|+|+|.|.+|+.+|..+. ..|+.|+ +.|.+
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~-l~d~~ 337 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVR-IKDIN 337 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEE-EEeCC
Confidence 58999999999999999887 5899987 67764
No 269
>PRK04148 hypothetical protein; Provisional
Probab=89.75 E-value=0.73 Score=38.83 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.++++|+++|.| -|..+|+.|.+.|..|+| .|.+
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~Via-IDi~ 48 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIV-IDIN 48 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEE-EECC
Confidence 367899999999 888899999999999994 5664
No 270
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=89.52 E-value=0.57 Score=45.32 Aligned_cols=34 Identities=35% Similarity=0.492 Sum_probs=29.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHH-CCCEEEEEecCCc
Q 036924 207 QRFVIQGFGNVGSWAARLIGE-KGGKIVAVSDISG 240 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~-~G~kvVaVsD~~G 240 (295)
.||+|.|||.+|+..++.+.+ .+.++|+|.|...
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~ 40 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI 40 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC
Confidence 699999999999999999875 4799999999753
No 271
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=89.40 E-value=0.59 Score=43.16 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=26.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
++|+|+|.|++|..+|..|.+.|..|+.+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 479999999999999999999999987443
No 272
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.38 E-value=0.98 Score=44.28 Aligned_cols=45 Identities=27% Similarity=0.485 Sum_probs=34.5
Q ss_pred HHHHHHHcC-CCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 193 MEALLNEHG-KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 193 ~~~~l~~~g-~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++.+.+.++ .....+++.|.|+|.+|+.+++.|.+.|..|+ +.|.
T Consensus 217 l~~~~~~~~~~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~-vid~ 262 (453)
T PRK09496 217 IRAVMSEFGRLEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVK-LIER 262 (453)
T ss_pred HHHHHHHhCccCCCCCEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence 344444443 33567899999999999999999999999998 4454
No 273
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=89.35 E-value=1.5 Score=36.90 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=53.7
Q ss_pred CCCCCchHHHHHHHHHHHHH-HcCCCCCCCEEEEEc--------CcHHHHHHHHHHHHCCCEEEEEecCCceEE
Q 036924 179 LGRDAATGRGVLFAMEALLN-EHGKNIAGQRFVIQG--------FGNVGSWAARLIGEKGGKIVAVSDISGAIK 243 (295)
Q Consensus 179 ~~r~~aTg~Gv~~~~~~~l~-~~g~~l~g~~vaIqG--------fGnVG~~~a~~L~~~G~kvVaVsD~~G~iy 243 (295)
.|+..+|-|....+.+.+.+ .....++...|-|-| .|.-...+.+.|+..|.+|+.|.|...--+
T Consensus 45 kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiPh 118 (132)
T PRK09607 45 ADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIPH 118 (132)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 56778999998888888887 334667889999999 677788899999999999999999865433
No 274
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=89.31 E-value=0.71 Score=46.52 Aligned_cols=37 Identities=38% Similarity=0.578 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHC-----CCEEEEEecCCc
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEK-----GGKIVAVSDISG 240 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~-----G~kvVaVsD~~G 240 (295)
.+.++|+|-|||-+|+.++|.+.++ +.+||||-+..+
T Consensus 125 ~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~n 166 (477)
T PRK08289 125 IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIVVRKG 166 (477)
T ss_pred CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEecCCC
Confidence 5678999999999999999998764 689999977654
No 275
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.31 E-value=1.2 Score=42.18 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=29.4
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
..|.+|+|+|.|.||..+++++...|++|++++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 368899999999999999999999999988654
No 276
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.30 E-value=0.64 Score=45.90 Aligned_cols=35 Identities=14% Similarity=0.417 Sum_probs=31.5
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++++|.|.|.|..|..+|++|.++|++|+ ++|.+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~-~~d~~ 37 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVA-AYDAE 37 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 568899999999999999999999999987 67764
No 277
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.27 E-value=0.42 Score=45.57 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCC-CEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKG-GKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G-~kvVaVsD~~ 239 (295)
.+.++|+|+|.|+||+.++..|...| .. +.+-|.+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEECC
Confidence 35689999999999999999998888 56 4477875
No 278
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.20 E-value=0.63 Score=43.90 Aligned_cols=32 Identities=38% Similarity=0.501 Sum_probs=27.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCC--EEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGG--KIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~--kvVaVsD~~ 239 (295)
++|+|+|.|+||+.+|..|..+|. .|+ +.|.+
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~-l~D~~ 34 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELV-LIDIN 34 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEeCC
Confidence 489999999999999999999994 555 77775
No 279
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.18 E-value=0.38 Score=50.82 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=28.3
Q ss_pred CEEEEEcCcHHHHHHHHHHH-HCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIG-EKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~-~~G~kvVaVsD~~ 239 (295)
++|+|+|.|.+|..+|..+. ..|..|+ +.|.+
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~-l~d~~ 342 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVR-IKDIN 342 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEE-EEeCC
Confidence 68999999999999999998 7899988 67764
No 280
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=89.15 E-value=0.88 Score=49.86 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=31.1
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
..+++|+|+|.|..|..+|..|.++|++|+ |-|.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vt-v~E~ 414 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVT-AIDG 414 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEE-EEcc
Confidence 478999999999999999999999999998 6664
No 281
>PRK07060 short chain dehydrogenase; Provisional
Probab=88.93 E-value=0.87 Score=40.11 Aligned_cols=36 Identities=19% Similarity=0.458 Sum_probs=31.1
Q ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 202 KNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
.++++++++|.|. |.+|+++++.|.++|++|+. .++
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~-~~r 41 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVA-AAR 41 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEE-EeC
Confidence 3578899999997 89999999999999999885 444
No 282
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.86 E-value=0.67 Score=43.16 Aligned_cols=32 Identities=22% Similarity=0.382 Sum_probs=28.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|++|+.+|..|...|..|+ +.|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~-l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVT-IVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEE-EEeCC
Confidence 589999999999999999999999987 55654
No 283
>PRK08628 short chain dehydrogenase; Provisional
Probab=88.81 E-value=0.77 Score=41.01 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=31.3
Q ss_pred CCCCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEe
Q 036924 201 GKNIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 201 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVs 236 (295)
+.+++++++.|.| .|.+|+.+|+.|.++|++|+.++
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~ 38 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFG 38 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEc
Confidence 4568999999999 58999999999999999988543
No 284
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=88.78 E-value=0.88 Score=43.15 Aligned_cols=37 Identities=27% Similarity=0.583 Sum_probs=32.6
Q ss_pred CCCCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEec
Q 036924 201 GKNIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 201 g~~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVsD 237 (295)
|.+.+++||.|.| .|-+|+++++.|.++|++|+++.+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4567899999999 599999999999999999997654
No 285
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=88.76 E-value=1.7 Score=38.95 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=22.5
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEKG 229 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G 229 (295)
+.+||+|+|.|++|+.+++.|.+.+
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~ 27 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTS 27 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCC
Confidence 4679999999999999999998776
No 286
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.75 E-value=0.63 Score=46.24 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCcHHHHH-HHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSW-AARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~-~a~~L~~~G~kvVaVsD~~ 239 (295)
.++++|.|.|.|..|.. +|++|.++|++|. ++|.+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~-~~D~~ 40 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVS-GSDLK 40 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEE-EECCC
Confidence 45789999999999999 7999999999987 78875
No 287
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=88.72 E-value=0.67 Score=43.50 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=28.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|+|++|..+|+.|.+.|.+|+ +.|.+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~dr~ 32 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYDHD 32 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEE-EEECC
Confidence 479999999999999999999999987 45654
No 288
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.70 E-value=0.89 Score=40.63 Aligned_cols=35 Identities=17% Similarity=0.431 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++++++|.|.|. |.+|+.+++.|.++|++|+ +.++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~-~~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVI-LNGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEE-EEeC
Confidence 478999999995 9999999999999999988 4555
No 289
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.69 E-value=0.69 Score=45.39 Aligned_cols=34 Identities=35% Similarity=0.484 Sum_probs=29.8
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+.++|.|.|+|..|..+|+.|.++|++|+ ++|.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~-g~D~~ 35 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVI-GVDKS 35 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 45789999999999999999999999876 57764
No 290
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=88.67 E-value=0.88 Score=40.31 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=30.4
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++++.|.|- |.+|+++|+.|.++|++|+.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 478999999996 8999999999999999998654
No 291
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=88.65 E-value=0.82 Score=40.29 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=30.1
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEec
Q 036924 204 IAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 204 l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVsD 237 (295)
+++++|.|.| .|.+|+++++.|.++|++|+.++.
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 5788999999 699999999999999999986543
No 292
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=88.63 E-value=0.71 Score=38.21 Aligned_cols=32 Identities=25% Similarity=0.418 Sum_probs=27.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 208 RFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+|+|.|.|.+|+.+++.|...|..=+.+.|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998545588765
No 293
>PLN02206 UDP-glucuronate decarboxylase
Probab=88.58 E-value=0.77 Score=45.72 Aligned_cols=37 Identities=30% Similarity=0.465 Sum_probs=32.3
Q ss_pred cCCCCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEe
Q 036924 200 HGKNIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 200 ~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVs 236 (295)
+|+..+++||.|.| .|-||+++++.|.++|.+|+++.
T Consensus 113 ~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 113 LGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred cccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 45556789999999 59999999999999999999764
No 294
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=88.58 E-value=0.74 Score=42.98 Aligned_cols=35 Identities=31% Similarity=0.374 Sum_probs=30.3
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
.++.+|+|.|.|.||..+++++...|+++|.++|.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 35789999999999999999999999997766665
No 295
>PRK06046 alanine dehydrogenase; Validated
Probab=88.50 E-value=2.6 Score=40.25 Aligned_cols=35 Identities=20% Similarity=0.041 Sum_probs=29.6
Q ss_pred CCCEEEEEcCcHHHHHHHHHHH-HCCCEEEEEecCC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIG-EKGGKIVAVSDIS 239 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~-~~G~kvVaVsD~~ 239 (295)
.-++|+|+|.|..|++.++.|. ..+.+.|.|.|.+
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~ 163 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRT 163 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCC
Confidence 3479999999999999999887 4578899888875
No 296
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=88.50 E-value=1.6 Score=41.81 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
..|.+|+|.|.|.||..+++++...|++|++++++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~ 216 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS 216 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36889999999999999999999999998866544
No 297
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.42 E-value=0.6 Score=45.79 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=28.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|.||..+|..|.+.|.+|++ .|.+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~-~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTG-VDID 32 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEE-EECC
Confidence 4799999999999999999999999884 5654
No 298
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=88.37 E-value=0.62 Score=44.83 Aligned_cols=83 Identities=23% Similarity=0.385 Sum_probs=51.4
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc-----------eEECCCCCC-HHHHHHHHHhcCCcccCCC--C
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG-----------AIKNSKGID-VPSLLKHVKEHRGVKGFSG--G 269 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G-----------~iy~~~GlD-~~~l~~~~~~~g~~~~~~~--~ 269 (295)
+++.-|+|+|.|.||+|++..|.+.|.+=+-|.|-+. ++.+.=|.. +.-|.+|.. .+..+.. +
T Consensus 72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~s---kiaPw~eIda 148 (430)
T KOG2018|consen 72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFS---KIAPWCEIDA 148 (430)
T ss_pred hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHH---hhCccceecH
Confidence 7889999999999999999999999975555666432 111222332 122333333 2332211 1
Q ss_pred e-----eeCCCCccccCceEEeccc
Q 036924 270 D-----SIDSNSILIEDCDVLIPAA 289 (295)
Q Consensus 270 ~-----~~~~~~~l~~~~DvlipaA 289 (295)
. .-+.++++.-+.|.+++|.
T Consensus 149 r~~l~~~~s~edll~gnPdFvvDci 173 (430)
T KOG2018|consen 149 RNMLWTSSSEEDLLSGNPDFVVDCI 173 (430)
T ss_pred HHhhcCCCchhhhhcCCCCeEeEhh
Confidence 1 1244678888899999884
No 299
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=88.27 E-value=0.67 Score=44.82 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=29.0
Q ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEE
Q 036924 201 GKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIV 233 (295)
Q Consensus 201 g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvV 233 (295)
|-+++|+||.|.|||.+|+.+|+.|...|..+.
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~ 189 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFGCVIL 189 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhccceee
Confidence 456899999999999999999999999994444
No 300
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=88.22 E-value=1.1 Score=36.02 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=27.2
Q ss_pred EEEEEcC-cHHHHHHHHHHHH-CCCEEEEEecCC
Q 036924 208 RFVIQGF-GNVGSWAARLIGE-KGGKIVAVSDIS 239 (295)
Q Consensus 208 ~vaIqGf-GnVG~~~a~~L~~-~G~kvVaVsD~~ 239 (295)
|++|+|. |.+|..+++.|.+ .++++++|++++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~ 34 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA 34 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEech
Confidence 5899995 9999999999988 589999996653
No 301
>PRK14852 hypothetical protein; Provisional
Probab=88.20 E-value=0.64 Score=50.73 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=32.4
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
|+..+|+|+|.|.||+.+++.|...|..=+.+.|-+
T Consensus 330 L~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D 365 (989)
T PRK14852 330 LLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFD 365 (989)
T ss_pred HhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 889999999999999999999999997666678765
No 302
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=88.10 E-value=1.3 Score=41.77 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=27.0
Q ss_pred CEEEEEcCcHHHHHHHHHH-HHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLI-GEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L-~~~G~kvVaVsD~~ 239 (295)
.+|+|+|.|++|...+..+ ...++.+++|+|.+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d 35 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGID 35 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCC
Confidence 5899999999998765444 45689999999874
No 303
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=88.07 E-value=1.1 Score=43.14 Aligned_cols=32 Identities=31% Similarity=0.298 Sum_probs=28.7
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHC-CCEEEEEecC
Q 036924 207 QRFVIQGF-GNVGSWAARLIGEK-GGKIVAVSDI 238 (295)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~~-G~kvVaVsD~ 238 (295)
+||+|.|. |.||+.+++.|.++ +++++++++.
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~ 36 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR 36 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc
Confidence 69999997 99999999999876 7899999884
No 304
>PRK12828 short chain dehydrogenase; Provisional
Probab=87.85 E-value=0.96 Score=39.44 Aligned_cols=34 Identities=21% Similarity=0.489 Sum_probs=29.7
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
.++++++.|.|- |.+|+.+++.|.++|++|+.++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~ 38 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIG 38 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEe
Confidence 367899999985 9999999999999999988553
No 305
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=87.82 E-value=1.7 Score=40.97 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=25.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEE
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEKGGKIV 233 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~G~kvV 233 (295)
-++|+|.|.|.+|+++|+.|.++|..+.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~ 30 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVR 30 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEE
Confidence 3689999999999999999999998773
No 306
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=87.74 E-value=0.58 Score=45.25 Aligned_cols=67 Identities=28% Similarity=0.465 Sum_probs=39.0
Q ss_pred EEEEcCcHHHHHHHHHHHHCCC--EEEEEecCCceEECCCCCCHHHHHHHHHhc--CCcccCCCCeeeC---CCCcc--c
Q 036924 209 FVIQGFGNVGSWAARLIGEKGG--KIVAVSDISGAIKNSKGIDVPSLLKHVKEH--RGVKGFSGGDSID---SNSIL--I 279 (295)
Q Consensus 209 vaIqGfGnVG~~~a~~L~~~G~--kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~--g~~~~~~~~~~~~---~~~~l--~ 279 (295)
|.|.|.|.||+.+++.|.+..- +|+ |+|.+ .+++.+..++. ..+. ...++ .+++- -
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~-va~r~----------~~~~~~~~~~~~~~~~~----~~~~d~~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVT-VADRN----------PEKAERLAEKLLGDRVE----AVQVDVNDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEE-EEESS----------HHHHHHHHT--TTTTEE----EEE--TTTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEE-EEECC----------HHHHHHHHhhcccccee----EEEEecCCHHHHHHHH
Confidence 6799999999999999998874 555 88875 44555554431 1111 11122 22222 3
Q ss_pred cCceEEecccc
Q 036924 280 EDCDVLIPAAL 290 (295)
Q Consensus 280 ~~~DvlipaA~ 290 (295)
.+|||+|.|+-
T Consensus 66 ~~~dvVin~~g 76 (386)
T PF03435_consen 66 RGCDVVINCAG 76 (386)
T ss_dssp TTSSEEEE-SS
T ss_pred hcCCEEEECCc
Confidence 58999999874
No 307
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=87.72 E-value=0.69 Score=46.40 Aligned_cols=36 Identities=31% Similarity=0.519 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
..+++|+|.|+|.-|..++++|.++|++|+ |+|.+-
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~-v~D~~~ 40 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVT-VSDDRP 40 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEE-EEcCCC
Confidence 348999999999999999999999999998 888653
No 308
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=87.72 E-value=0.84 Score=42.89 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=27.5
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++|+++|.|++|+.+++.|.+.|..|+ |.|.
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~-v~~~ 31 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLH-VTTI 31 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEE-EEeC
Confidence 379999999999999999999999886 6665
No 309
>PRK06141 ornithine cyclodeaminase; Validated
Probab=87.70 E-value=3.1 Score=39.50 Aligned_cols=67 Identities=24% Similarity=0.251 Sum_probs=40.5
Q ss_pred ccCccccC-CCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHH-CCCEEEEEecCC
Q 036924 168 VTGKPIDL-GGSLGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGE-KGGKIVAVSDIS 239 (295)
Q Consensus 168 ~tGkp~~~-GG~~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~-~G~kvVaVsD~~ 239 (295)
-||.|+.+ -|..-..--||-.-+.+++.+ .. ...++|+|+|.|..|+..++.+.. ++.+=|.|.+.+
T Consensus 91 ~tG~p~ai~d~~~lT~~RTaa~sala~~~L----a~-~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs 159 (314)
T PRK06141 91 RTGEPLALVDGTELTARRTAAASALAASYL----AR-KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD 159 (314)
T ss_pred CCCCEEEEEcCcchhcchhHHHHHHHHHHh----CC-CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 37888652 333333334444444444443 22 356899999999999999986664 554444466654
No 310
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.53 E-value=2.2 Score=40.42 Aligned_cols=31 Identities=29% Similarity=0.404 Sum_probs=27.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCC-EEEEEecC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGG-KIVAVSDI 238 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~-kvVaVsD~ 238 (295)
++|+|+|.|+||..+|..|..+|. .|+ +.|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~Vv-lvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLV-LLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEE-EEeC
Confidence 589999999999999999999875 755 7787
No 311
>PRK07236 hypothetical protein; Provisional
Probab=87.52 E-value=1.1 Score=43.19 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNS 245 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~ 245 (295)
++..+|+|+|-|-+|..+|..|.+.|.+|+ |-|.......+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~-v~E~~~~~~~~ 44 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVD-VFERSPTELDG 44 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEE-EEecCCCCcCC
Confidence 556899999999999999999999999987 88865433333
No 312
>PRK06841 short chain dehydrogenase; Provisional
Probab=87.50 E-value=1.1 Score=39.74 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=30.0
Q ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVs 236 (295)
++++++|.|.| .|.+|+++|+.|.++|++|+.++
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~ 46 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLD 46 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 47899999999 59999999999999999988543
No 313
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=87.45 E-value=2.4 Score=39.72 Aligned_cols=35 Identities=20% Similarity=0.417 Sum_probs=31.6
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++++++.|.|. +.+|+.+|+.|+++|+.+|-|+-+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 57889999995 999999999999999999977765
No 314
>PRK09291 short chain dehydrogenase; Provisional
Probab=87.44 E-value=1.1 Score=39.96 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=27.7
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEec
Q 036924 206 GQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 206 g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD 237 (295)
++++.|.|- |.+|+++++.|.++|++|++++.
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 468899985 89999999999999999996543
No 315
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=87.42 E-value=0.6 Score=36.43 Aligned_cols=36 Identities=31% Similarity=0.285 Sum_probs=28.8
Q ss_pred CCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEecCCc
Q 036924 205 AGQRFVIQGFGNVGSWAARLI-GEKGGKIVAVSDISG 240 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L-~~~G~kvVaVsD~~G 240 (295)
+..+|+|+|.|+.|+.++..+ ...|++++++.|.+.
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~ 38 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP 38 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC
Confidence 356899999999999887433 467999999998763
No 316
>CHL00041 rps11 ribosomal protein S11
Probab=87.40 E-value=2.4 Score=34.81 Aligned_cols=66 Identities=21% Similarity=0.198 Sum_probs=51.2
Q ss_pred CCCCCchHHHHHHHHHHHHH-HcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEEC
Q 036924 179 LGRDAATGRGVLFAMEALLN-EHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKN 244 (295)
Q Consensus 179 ~~r~~aTg~Gv~~~~~~~l~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~ 244 (295)
.|....|-|....+.+.+++ .....++...|.|-|+|.=-..+.+.|.+.|.+|+-|.|....-+|
T Consensus 48 Kg~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~TpiphN 114 (116)
T CHL00041 48 KGARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPMPHN 114 (116)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 34556888877777777766 3345678899999999987788889999999999999998654443
No 317
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=87.34 E-value=0.73 Score=43.43 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=29.2
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEec
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD 237 (295)
...++|+|.|.|.+|..+|..|++.|..|+-++-
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r 36 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLR 36 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 3457999999999999999999999998885543
No 318
>PRK05309 30S ribosomal protein S11; Validated
Probab=87.19 E-value=2.4 Score=35.41 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=50.8
Q ss_pred CCCCCchHHHHHHHHHHHHH-HcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEE
Q 036924 179 LGRDAATGRGVLFAMEALLN-EHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIK 243 (295)
Q Consensus 179 ~~r~~aTg~Gv~~~~~~~l~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy 243 (295)
.+....|-|....+.+.+.+ .....++...|.|-|+|.=-..+.+.|...|.+|+.|.|....-|
T Consensus 52 Kg~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~I~D~Tpiph 117 (128)
T PRK05309 52 KGSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSIKDVTPIPH 117 (128)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 34557888887777777766 334557789999999998778888999999999999999865433
No 319
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.09 E-value=0.94 Score=44.71 Aligned_cols=31 Identities=39% Similarity=0.495 Sum_probs=28.5
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 208 RFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+|.|.|.|..|..+|++|.++|++|. ++|.+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~-~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVV-VSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence 79999999999999999999999876 78875
No 320
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.99 E-value=0.63 Score=44.83 Aligned_cols=50 Identities=28% Similarity=0.407 Sum_probs=37.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEE
Q 036924 179 LGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGG-KIVAV 235 (295)
Q Consensus 179 ~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~-kvVaV 235 (295)
++-.-+||||.+.-+ + .. -+|.+|||.|.|.||.++++-....|| +|+||
T Consensus 173 LgCGvsTG~GAa~~~---A---kv-~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgv 223 (375)
T KOG0022|consen 173 LGCGVSTGYGAAWNT---A---KV-EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGV 223 (375)
T ss_pred eeccccccchhhhhh---c---cc-CCCCEEEEEecchHHHHHHHhHHhcCcccEEEE
Confidence 455668999954322 1 22 368999999999999999988888885 78864
No 321
>PRK08618 ornithine cyclodeaminase; Validated
Probab=86.97 E-value=3.1 Score=39.66 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=41.1
Q ss_pred ccCccccC-CCCCCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHH-HCCCEEEEEecCC
Q 036924 168 VTGKPIDL-GGSLGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVGSWAARLIG-EKGGKIVAVSDIS 239 (295)
Q Consensus 168 ~tGkp~~~-GG~~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~-~~G~kvVaVsD~~ 239 (295)
.||.|+.+ .|..-...-||-.-+.+++. +.. ...++++|.|.|..|++.++.+. ..+++-|.|.|.+
T Consensus 93 ~tG~p~a~~d~~~lT~~RTaa~sala~~~----la~-~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~ 161 (325)
T PRK08618 93 ETGEVLAILDGTYLTQIRTGALSGVATKY----LAR-EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT 161 (325)
T ss_pred CCCceEEEEccchhhhhhHHHHHHHHHHH----hcC-CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC
Confidence 37777653 22222222333333333333 322 24679999999999998887765 4688888888775
No 322
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=86.93 E-value=2.6 Score=34.11 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=51.7
Q ss_pred CCCCCchHHHHHHHHHHHHH-HcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEEC
Q 036924 179 LGRDAATGRGVLFAMEALLN-EHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKN 244 (295)
Q Consensus 179 ~~r~~aTg~Gv~~~~~~~l~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~ 244 (295)
.+....|-|....+.+.+.+ .....++...|-+-|+|.=-..+.+.|.+.|.+|+-|.|....-||
T Consensus 35 kg~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~D~T~iphN 101 (108)
T TIGR03632 35 KGSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIKDVTPIPHN 101 (108)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCCC
Confidence 35567888887777777766 3345678889999999987788889999999999999998654443
No 323
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=86.88 E-value=1.5 Score=38.27 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
.++++++.|.|. |.+|+++++.|.+.|++|+.++..
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 457889999995 999999999999999999756543
No 324
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=86.86 E-value=1.4 Score=39.01 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=30.1
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++++++.|.|. |.+|+.+|+.|.++|++|+.+.+.
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~ 36 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGP 36 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCC
Confidence 46789999985 999999999999999999865543
No 325
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=86.79 E-value=1 Score=46.05 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
..|++|+|+|.|.+|..+|..|.++|++|+ |.|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~-v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVT-IFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 468999999999999999999999999977 6764
No 326
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=86.77 E-value=5 Score=34.58 Aligned_cols=49 Identities=24% Similarity=0.403 Sum_probs=31.8
Q ss_pred CchHHHHHHHHHHHHHHcCCCCCCCEEEEEcCcHHH---HHHHHHHHHCCCEEEE
Q 036924 183 AATGRGVLFAMEALLNEHGKNIAGQRFVIQGFGNVG---SWAARLIGEKGGKIVA 234 (295)
Q Consensus 183 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGfGnVG---~~~a~~L~~~G~kvVa 234 (295)
+..|++++..++..+ +.....+-+++.|-||=| ..+||+|.++|++|..
T Consensus 6 E~Ag~~~a~~i~~~~---~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 6 ENAGRAIAELIRKLF---GSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp HHHHHHHHHHHHHHS---TCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHh---cccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 346777776555544 222334455678997754 7889999999999874
No 327
>PRK07774 short chain dehydrogenase; Provisional
Probab=86.77 E-value=1.4 Score=39.06 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=29.0
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaV 235 (295)
++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~ 36 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVA 36 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 67899999996 999999999999999999854
No 328
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=86.73 E-value=2 Score=40.19 Aligned_cols=71 Identities=23% Similarity=0.172 Sum_probs=45.8
Q ss_pred CCCEEEEEcCcHHH-HHHHHHHHHCC--CEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCcccc-
Q 036924 205 AGQRFVIQGFGNVG-SWAARLIGEKG--GKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIE- 280 (295)
Q Consensus 205 ~g~~vaIqGfGnVG-~~~a~~L~~~G--~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l~~- 280 (295)
+-+||+|+|.|+.+ ...+..+.+.+ +.+++|+|++ .+.+.+..++.+.-. ..-+.+++++.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~----------~~~a~~~a~~~~~~~-----~~~~~~~ll~~~ 66 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRD----------PERAEAFAEEFGIAK-----AYTDLEELLADP 66 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCC----------HHHHHHHHHHcCCCc-----ccCCHHHHhcCC
Confidence 35799999999777 45667777765 6999999986 345555555543211 12244667754
Q ss_pred CceEEecccc
Q 036924 281 DCDVLIPAAL 290 (295)
Q Consensus 281 ~~DvlipaA~ 290 (295)
++|+++=|+.
T Consensus 67 ~iD~V~Iatp 76 (342)
T COG0673 67 DIDAVYIATP 76 (342)
T ss_pred CCCEEEEcCC
Confidence 3787776654
No 329
>PLN02240 UDP-glucose 4-epimerase
Probab=86.65 E-value=1.3 Score=41.54 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=30.4
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
.+++++|.|.|- |.+|+++++.|.+.|++|++++
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 467899999985 9999999999999999999765
No 330
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.58 E-value=0.98 Score=45.12 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=29.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-++++|+|.|+|.-|.+++++|. .|++|+ |+|.+
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~-~g~~v~-v~D~~ 37 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQ-NKYDVI-VYDDL 37 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHh-CCCEEE-EECCC
Confidence 35789999999999999999999 499987 88843
No 331
>PRK06949 short chain dehydrogenase; Provisional
Probab=86.54 E-value=1.5 Score=39.03 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=30.6
Q ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 202 KNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
.++++++|.|.|- |.+|+++++.|.++|++|+.++
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~ 40 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLAS 40 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 3478999999995 9999999999999999988553
No 332
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=86.40 E-value=2.3 Score=41.75 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=25.7
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|.|.||..+|..|+ .|+.|+ +.|.+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~Vi-gvD~d 31 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVV-ALDIL 31 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEE-EEECC
Confidence 47999999999999997776 499988 55654
No 333
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.39 E-value=1.1 Score=44.30 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=29.8
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+-+|+|.|.|..|..+|++|.++|++|+ ++|.+
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~ 38 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFA-VMDSR 38 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEE-EEeCC
Confidence 4589999999999999999999999986 79974
No 334
>PRK06138 short chain dehydrogenase; Provisional
Probab=86.33 E-value=1.3 Score=39.08 Aligned_cols=34 Identities=24% Similarity=0.553 Sum_probs=30.0
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 367899999996 9999999999999999998654
No 335
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=86.26 E-value=1.1 Score=41.59 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=26.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEE
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaV 235 (295)
++|+|.|.|++|..+|..|.+.|..|+.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~ 29 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFL 29 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEE
Confidence 47999999999999999999999888744
No 336
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.26 E-value=1.4 Score=38.77 Aligned_cols=34 Identities=21% Similarity=0.470 Sum_probs=29.5
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~ 36 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTD 36 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 367889999995 9999999999999999987543
No 337
>PRK06223 malate dehydrogenase; Reviewed
Probab=86.23 E-value=0.87 Score=42.71 Aligned_cols=32 Identities=38% Similarity=0.486 Sum_probs=26.9
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCC-EEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGG-KIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~-kvVaVsD~~ 239 (295)
+||+|+|.|+||+.+|..+...|. .|+ +.|.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~-L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVV-LFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEE-EEECC
Confidence 589999999999999999998874 555 66773
No 338
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=86.19 E-value=1.4 Score=37.15 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=28.0
Q ss_pred EEEEcC-cHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 209 FVIQGF-GNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 209 vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
|+|.|- |.+|+.+++.|.+.|++|++++-+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCc
Confidence 688995 9999999999999999999988664
No 339
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=86.12 E-value=1.3 Score=41.89 Aligned_cols=33 Identities=27% Similarity=0.545 Sum_probs=29.5
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++|.|.|- |-+|+++++.|.++|.+|++++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 46899999995 9999999999999999999764
No 340
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=86.07 E-value=1.3 Score=42.80 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=29.5
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 205 AGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 205 ~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++||.|.|- |.||+++++.|.++|.+|++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 5789999997 9999999999999999999775
No 341
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=86.03 E-value=1.1 Score=41.43 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=23.2
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEKG 229 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G 229 (295)
+..+|+|+|.|.+|+++++.|.+.|
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 5789999999999999999999875
No 342
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=86.02 E-value=1.5 Score=39.06 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=29.1
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaV 235 (295)
++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~ 37 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIA 37 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 67899999997 999999999999999999854
No 343
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=85.92 E-value=1.2 Score=46.46 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+++|+|+|.|..|..+|..|.++|++|+ |.|..
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~-V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVT-VYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEecC
Confidence 368999999999999999999999999987 67653
No 344
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.90 E-value=1.6 Score=38.53 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=30.0
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++++++.|.|. |.+|+.+++.|.++|++|+. .|.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~-~~r 37 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLAL-IDL 37 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EeC
Confidence 67899999997 99999999999999999874 444
No 345
>PRK12742 oxidoreductase; Provisional
Probab=85.89 E-value=1.7 Score=38.14 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=28.9
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaV 235 (295)
+++++|.|.|- |.+|+.+++.|.++|++|+.+
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 67899999995 999999999999999998854
No 346
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=85.88 E-value=1.5 Score=38.82 Aligned_cols=32 Identities=22% Similarity=0.413 Sum_probs=28.7
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEE
Q 036924 204 IAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 204 l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaV 235 (295)
+++++|.|.| .|.+|+++++.|.++|++|+.+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~ 34 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIA 34 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 4678999999 5999999999999999999854
No 347
>PRK09186 flagellin modification protein A; Provisional
Probab=85.82 E-value=1.5 Score=38.93 Aligned_cols=32 Identities=34% Similarity=0.587 Sum_probs=28.9
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaV 235 (295)
+++++|.|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 46899999996 899999999999999999865
No 348
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.81 E-value=1.1 Score=43.87 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=26.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEE
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaV 235 (295)
++|+|.|+|++|+.+++.|.+.|..|+.|
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vi 29 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVI 29 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 47999999999999999999999999855
No 349
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=85.76 E-value=1.1 Score=42.27 Aligned_cols=29 Identities=17% Similarity=0.510 Sum_probs=26.5
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEE
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaV 235 (295)
++|+|+|.|.+|..+|..|.+.|..|+.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~ 31 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLI 31 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999998844
No 350
>PRK08339 short chain dehydrogenase; Provisional
Probab=85.71 E-value=1.7 Score=39.52 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=30.9
Q ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 202 KNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
.+++++++.|.|. +.+|+.+|+.|.++|++|+ +.|.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~-~~~r 40 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVI-LLSR 40 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEE-EEeC
Confidence 4578999999996 7899999999999999988 4454
No 351
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.68 E-value=1.6 Score=38.32 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=29.3
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++|.|.|. |.+|+++++.|.++|++|+.++
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~ 36 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINS 36 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 57899999997 8899999999999999998553
No 352
>PRK06125 short chain dehydrogenase; Provisional
Probab=85.66 E-value=1.7 Score=38.88 Aligned_cols=36 Identities=28% Similarity=0.427 Sum_probs=30.7
Q ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 202 KNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
.+++++++.|.|. |.+|+.+++.|.++|++|+.+ ++
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~-~r 39 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLV-AR 39 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 3468899999997 789999999999999998854 44
No 353
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=85.65 E-value=1.6 Score=39.26 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=30.7
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
.+.++|.|.|. |.+|+.+++.|.+.|++|++++..
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecC
Confidence 56789999995 999999999999999999877643
No 354
>PRK06057 short chain dehydrogenase; Provisional
Probab=85.63 E-value=1.6 Score=39.05 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=29.5
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaV 235 (295)
+++++|.|.|- |.+|.++++.|.++|++|+.+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 78999999997 999999999999999999854
No 355
>PLN02427 UDP-apiose/xylose synthase
Probab=85.62 E-value=1.5 Score=42.18 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=31.6
Q ss_pred CCCCCCCEEEEEcC-cHHHHHHHHHHHHC-CCEEEEEe
Q 036924 201 GKNIAGQRFVIQGF-GNVGSWAARLIGEK-GGKIVAVS 236 (295)
Q Consensus 201 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~-G~kvVaVs 236 (295)
|..++.+||.|.|- |-+|+++++.|.++ |.+|+++.
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~ 46 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALD 46 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEe
Confidence 56688899999995 99999999999998 58999775
No 356
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.60 E-value=1.5 Score=41.40 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=31.4
Q ss_pred CCCCCCEEEEEcCc---HHHHHHHHHHHHCCCEEEEEec
Q 036924 202 KNIAGQRFVIQGFG---NVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 202 ~~l~g~~vaIqGfG---nVG~~~a~~L~~~G~kvVaVsD 237 (295)
.+++||++.|-|-| .+|+++|+.|.+.|++|| |.|
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vv-v~~ 41 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATIL-VGT 41 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEE-EEe
Confidence 46789999999996 899999999999999998 665
No 357
>PRK06523 short chain dehydrogenase; Provisional
Probab=85.59 E-value=1.6 Score=38.94 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=30.8
Q ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 202 KNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
.+++++++.|.|- |.+|+.+++.|.++|++|+.++
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 40 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTA 40 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEe
Confidence 3578999999995 8999999999999999998554
No 358
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.54 E-value=1.2 Score=45.43 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=31.0
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.+.++|+|+|.|--|..+|+.|++.|++|+ |-+.+
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~-VLEAR 47 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVL-VLEAR 47 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHcCCceE-EEecc
Confidence 456899999999999999999999999987 77654
No 359
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.53 E-value=1.7 Score=38.51 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=29.2
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEec
Q 036924 204 IAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 204 l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVsD 237 (295)
++++++.|.| .|.+|+++|+.|.++|++|+.+.+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 5678999998 699999999999999999985443
No 360
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=85.46 E-value=2.8 Score=39.94 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=33.9
Q ss_pred HHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 197 LNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 197 l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+...+....|.+|+|.|.|.||..+++++...|++|+.+++.
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~ 213 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS 213 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 344444447889999999999999999999999998876654
No 361
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=85.42 E-value=0.67 Score=43.60 Aligned_cols=56 Identities=29% Similarity=0.377 Sum_probs=46.3
Q ss_pred CchHHHHHHHHHHHHHHcCCCCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEecCCceE
Q 036924 183 AATGRGVLFAMEALLNEHGKNIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVSDISGAI 242 (295)
Q Consensus 183 ~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVsD~~G~i 242 (295)
.+|-.|++ ++|+++|+.+.|+++.|.| .=+||+-+|-+|+..|+.+-.+-|..=++
T Consensus 147 PcTP~gv~----eiL~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti 203 (309)
T KOG0089|consen 147 PCTPLGVV----EILERTGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTI 203 (309)
T ss_pred CCchHHHH----HHHHHhCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEEE
Confidence 68888875 5677889999999999999 68999999999999998877666655433
No 362
>PRK12829 short chain dehydrogenase; Provisional
Probab=85.42 E-value=1.5 Score=39.01 Aligned_cols=33 Identities=21% Similarity=0.428 Sum_probs=29.4
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
++++++.|.|. |.+|+++++.|.++|++|+.+.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 68899999996 9999999999999999987544
No 363
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=85.33 E-value=1.3 Score=42.78 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=28.5
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.+|+|+|-|-+|..+|..|++.|.+|+ |-|..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~-vle~~ 33 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVT-VFDRH 33 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEE-EEeCC
Confidence 389999999999999999999999986 77753
No 364
>PRK07806 short chain dehydrogenase; Provisional
Probab=85.31 E-value=1.9 Score=38.12 Aligned_cols=34 Identities=18% Similarity=0.422 Sum_probs=30.0
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEec
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD 237 (295)
++++++.|.|- |.+|+++++.|.++|++|++++.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 67899999995 99999999999999999986543
No 365
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=85.30 E-value=1.4 Score=42.58 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=28.2
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|-|-+|..+|..|++.|.+|+ |-|.+
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~-vle~~ 32 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVT-VIDRQ 32 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 479999999999999999999999976 77653
No 366
>PRK05867 short chain dehydrogenase; Provisional
Probab=85.30 E-value=1.8 Score=38.65 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=30.3
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+++++++.|.|- |.+|+++++.|.++|++|+. .+.
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~-~~r 41 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAI-AAR 41 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEE-EcC
Confidence 368899999996 89999999999999999884 444
No 367
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=85.28 E-value=1.5 Score=41.66 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEec
Q 036924 202 KNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD 237 (295)
+-++.++|.|.|- |-+|+++++.|.++|.+|+++..
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 3467899999995 99999999999999999997754
No 368
>PRK08703 short chain dehydrogenase; Provisional
Probab=85.23 E-value=1.8 Score=38.28 Aligned_cols=34 Identities=15% Similarity=0.407 Sum_probs=29.6
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 367899999995 9999999999999999988543
No 369
>PRK09072 short chain dehydrogenase; Provisional
Probab=85.21 E-value=1.8 Score=38.81 Aligned_cols=34 Identities=21% Similarity=0.520 Sum_probs=29.5
Q ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++++.|.| .|.+|+.+++.|.++|++|+.++
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 35788999999 49999999999999999988554
No 370
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=85.17 E-value=1.8 Score=38.92 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=31.5
Q ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 202 KNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
.+++++++.|.|. +.+|+++|+.|.++|++|+.++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 3478999999996 899999999999999999865443
No 371
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.14 E-value=1.6 Score=39.39 Aligned_cols=36 Identities=22% Similarity=0.389 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcCc---HHHHHHHHHHHHCCCEEEEEecCC
Q 036924 203 NIAGQRFVIQGFG---NVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 203 ~l~g~~vaIqGfG---nVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+++++++.|.|-+ .+|+.+|+.|.+.|++|+ +++.+
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~-l~~r~ 45 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELA-VTYLN 45 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEE-EEeCC
Confidence 4789999999975 699999999999999987 55553
No 372
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=85.13 E-value=1.1 Score=43.95 Aligned_cols=31 Identities=32% Similarity=0.706 Sum_probs=28.2
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 208 RFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+|.|.|+|..|..+|++|.++|++|. +||.+
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~-~sD~~ 31 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVT-VTDLK 31 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEE-EEeCC
Confidence 47899999999999999999999987 79975
No 373
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=85.11 E-value=0.47 Score=45.10 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=25.5
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
+||+|.|.|.||+.++-.|++.|..|+-+.
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~ 30 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLV 30 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEe
Confidence 589999999999999999999995555443
No 374
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.09 E-value=1.5 Score=40.09 Aligned_cols=34 Identities=18% Similarity=0.341 Sum_probs=29.8
Q ss_pred CCCCEEEEEcCc---HHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGFG---NVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGfG---nVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++++++.|.|-+ .+|+.+|+.|.+.|++|+ +++.
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~-~~~r 41 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELA-FTYQ 41 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEE-EecC
Confidence 678999999987 699999999999999998 4554
No 375
>PRK05875 short chain dehydrogenase; Provisional
Probab=85.08 E-value=1.9 Score=38.95 Aligned_cols=34 Identities=15% Similarity=0.316 Sum_probs=30.1
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 467899999996 8999999999999999988654
No 376
>PRK08818 prephenate dehydrogenase; Provisional
Probab=84.96 E-value=3 Score=40.86 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=27.6
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHC-CCEEEEEecC
Q 036924 205 AGQRFVIQGF-GNVGSWAARLIGEK-GGKIVAVSDI 238 (295)
Q Consensus 205 ~g~~vaIqGf-GnVG~~~a~~L~~~-G~kvVaVsD~ 238 (295)
...||+|+|+ |-+|+++|+.|.+. +.+|++ .|.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g-~D~ 37 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIG-HDP 37 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEE-EcC
Confidence 4679999999 99999999999864 788874 454
No 377
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=84.95 E-value=1.5 Score=40.54 Aligned_cols=32 Identities=25% Similarity=0.544 Sum_probs=28.7
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEe
Q 036924 205 AGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 205 ~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVs 236 (295)
++++|.|.| .|-+|+++++.|.++|.+|+++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 468999999 59999999999999999998665
No 378
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=84.94 E-value=1.5 Score=40.38 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=27.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
..|+|+|-|-.|..+|..|+++|.+|+ |-|.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~-i~E~~~ 34 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVT-IIERRP 34 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEE-EEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccc-cchhcc
Confidence 369999999999999999999999987 888753
No 379
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.73 E-value=1.7 Score=39.16 Aligned_cols=32 Identities=19% Similarity=0.491 Sum_probs=28.8
Q ss_pred CCCCEEEEEcCc---HHHHHHHHHHHHCCCEEEEE
Q 036924 204 IAGQRFVIQGFG---NVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 204 l~g~~vaIqGfG---nVG~~~a~~L~~~G~kvVaV 235 (295)
++++++.|.|-+ .+|+.+|+.|.+.|++|+.+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYT 39 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe
Confidence 688999999985 79999999999999999843
No 380
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=84.71 E-value=1.8 Score=39.44 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=31.3
Q ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEec
Q 036924 203 NIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 203 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD 237 (295)
.+++++|.|+|-|.|+..=++.|.+.|++|+-||-
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 47799999999999999989999999999986664
No 381
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.69 E-value=1.6 Score=42.90 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=31.3
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+.+++|.|.|+|.-|..++++|.+.|++|+ ++|.+
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~-~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPR-VIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 457899999999999999999999999987 68875
No 382
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=84.69 E-value=1.8 Score=42.74 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=38.3
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc-----------eEECCCCCCHHHHHHHHHhcCCc
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG-----------AIKNSKGIDVPSLLKHVKEHRGV 263 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G-----------~iy~~~GlD~~~l~~~~~~~g~~ 263 (295)
+||+|.|.|=||...+-.|++.|..||. .|.+- -||.|. +++|++.....|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~-vDid~~KV~~ln~g~~PI~Epg---Le~ll~~~~~~gRl 64 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVC-VDIDESKVELLNKGISPIYEPG---LEELLKENLASGRL 64 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEE-EeCCHHHHHHHhCCCCCCcCcc---HHHHHHhccccCcE
Confidence 6899999999999999999999999995 56542 255553 45666544444444
No 383
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=84.64 E-value=1.1 Score=46.66 Aligned_cols=33 Identities=36% Similarity=0.580 Sum_probs=28.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+|.|.|||.+|+.+++.|.++|.+++ +-|.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~d 432 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMT-VLDHD 432 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEE-EEECC
Confidence 3689999999999999999999999988 44654
No 384
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.62 E-value=2 Score=37.93 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=29.5
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+++++++|.|- |.+|+++++.|.++|++|+.+.++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r 37 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYAR 37 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 46789999996 899999999999999998854443
No 385
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=84.51 E-value=3.6 Score=33.30 Aligned_cols=64 Identities=25% Similarity=0.308 Sum_probs=50.2
Q ss_pred CCCCchHHHHHHHHHHHHHH-cCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEE
Q 036924 180 GRDAATGRGVLFAMEALLNE-HGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIK 243 (295)
Q Consensus 180 ~r~~aTg~Gv~~~~~~~l~~-~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy 243 (295)
+....|-+....+.+.+++. ....++...|-|-|+|.--..+.+.|...|.+|+-|.|....-+
T Consensus 36 ~~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~D~T~iph 100 (110)
T PF00411_consen 36 GARKSTPYAAQQAAEKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSITDVTPIPH 100 (110)
T ss_dssp TTCGSSHHHHHHHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEEEETT--S
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEEeecCCCC
Confidence 34467878777777777773 34557788999999999888999999999999999999865434
No 386
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=84.50 E-value=16 Score=37.61 Aligned_cols=116 Identities=20% Similarity=0.236 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcccCCCCCCCHHHHHHHHHHhchhcCCCCccccCccccCCCCCCCCCchHHHHHHHH
Q 036924 114 ISELERLTRVFTQKIHDLIGIHADVPAPDMGTGPQTMAWILDEYSKFHGHSPAVVTGKPIDLGGSLGRDAATGRGVLFAM 193 (295)
Q Consensus 114 ~~e~erl~r~f~~~l~~~iG~~~dipapDvgt~~~~m~w~~d~~~~~~g~~~~~~tGkp~~~GG~~~r~~aTg~Gv~~~~ 193 (295)
..|-..+...|+.++..-.|+..-|-=.|.++.-.- -+.+.|+.-.- ++. +--.-||-=+..++
T Consensus 234 g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~nAf--rlL~kYr~~~c----~FN----------DDIQGTaaValAgl 297 (582)
T KOG1257|consen 234 GKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANHNAF--RLLEKYRNKYC----MFN----------DDIQGTAAVALAGL 297 (582)
T ss_pred ccHHHHHHHHHHHHHHHHhCcceEEEehhccchhHH--HHHHHhccccc----eec----------ccccchhHHHHHHH
Confidence 345566889999999999999987777899875222 12344543211 111 11223655555677
Q ss_pred HHHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHH----HCC-------CEEEEEecCCceEECCC
Q 036924 194 EALLNEHGKNIAGQRFVIQGFGNVGSWAARLIG----EKG-------GKIVAVSDISGAIKNSK 246 (295)
Q Consensus 194 ~~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~----~~G-------~kvVaVsD~~G~iy~~~ 246 (295)
..+++..+.++++-++.++|.|..|.++|+++. +.| -+|- ..|++|-|....
T Consensus 298 laa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIw-lvD~~GLi~~~r 360 (582)
T KOG1257|consen 298 LAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIW-LVDSKGLITKGR 360 (582)
T ss_pred HHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEE-EEecCceeeccc
Confidence 788888899999999999999999999998875 345 3444 778888776443
No 387
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=84.50 E-value=1.3 Score=37.14 Aligned_cols=32 Identities=44% Similarity=0.644 Sum_probs=26.2
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHCC--CEEEEEecCC
Q 036924 207 QRFVIQGF-GNVGSWAARLIGEKG--GKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~~G--~kvVaVsD~~ 239 (295)
+||+|+|. |+||+++|..|...+ -.++ +.|.+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~-L~D~~ 35 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIV-LIDIN 35 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEE-EEESS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceE-EeccC
Confidence 58999999 999999999998876 3554 66664
No 388
>PRK07831 short chain dehydrogenase; Provisional
Probab=84.47 E-value=1.8 Score=38.90 Aligned_cols=34 Identities=38% Similarity=0.640 Sum_probs=29.2
Q ss_pred CCCCEEEEEcC-c-HHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGF-G-NVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGf-G-nVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++++++.|.|- | .+|+.+++.|.++|++|+ +.|.
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~~ 50 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISDI 50 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEeC
Confidence 56899999996 6 699999999999999987 5554
No 389
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=84.45 E-value=7.2 Score=36.43 Aligned_cols=41 Identities=27% Similarity=0.469 Sum_probs=32.9
Q ss_pred HHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 197 LNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 197 l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++..+. .+|.+|.|.|.|.+|+.+++++..+|++|+.++++
T Consensus 162 ~~~~~~-~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~ 202 (337)
T cd05283 162 LKRNGV-GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRS 202 (337)
T ss_pred HHhcCC-CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCC
Confidence 344443 46789999999999999999999999999866544
No 390
>PRK06753 hypothetical protein; Provisional
Probab=84.36 E-value=1.5 Score=41.67 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=28.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|+|+|-|.+|..+|..|.++|.+|+ |-|.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~-v~E~~ 32 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVK-VFEKN 32 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEE-EEecC
Confidence 479999999999999999999999987 77654
No 391
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=84.35 E-value=2 Score=35.53 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=26.3
Q ss_pred EEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 209 FVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 209 vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
|+|.|.|++|..+|-.|++.|..|.-++-+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999998855544
No 392
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=84.25 E-value=48 Score=33.24 Aligned_cols=140 Identities=16% Similarity=0.211 Sum_probs=82.9
Q ss_pred eccCCCCCCHHHHHHHHHHHHHHHHhhcCCCCcccCC-----CCCCCHHHHHHHHHHhchh---cCCC------CccccC
Q 036924 105 IGCNPVDLSISELERLTRVFTQKIHDLIGIHADVPAP-----DMGTGPQTMAWILDEYSKF---HGHS------PAVVTG 170 (295)
Q Consensus 105 I~~dP~~~s~~e~erl~r~f~~~l~~~iG~~~dipap-----Dvgt~~~~m~w~~d~~~~~---~g~~------~~~~tG 170 (295)
+.+.|...+ | -+|-.++..+-|....+..+ .-|-+-+|-+.+++.|..+ +... -+-...
T Consensus 132 lF~epSTRT-----R--~SFE~A~~~LGg~~i~l~~~~~ss~~kGESi~DTarvLs~y~D~IviR~~~~~~~~e~A~~s~ 204 (429)
T PRK11891 132 LFFEASTRT-----R--VSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPEQGSVAEFARATN 204 (429)
T ss_pred EeccCCchh-----H--HHHHHHHHHcCCeEEEeCCccccCCCCCCCHHHHHHHHHHhCCEEEEeCCchhHHHHHHHhCC
Confidence 345776543 2 27888888877766545322 2356677888888888542 1111 123467
Q ss_pred ccccCCCC-CCCCCchHHHHHHHHHHHHHHcCCCCCCCEEEEEcC---cHHHHHHHHHHHHC-CCEEEEEecCCceEECC
Q 036924 171 KPIDLGGS-LGRDAATGRGVLFAMEALLNEHGKNIAGQRFVIQGF---GNVGSWAARLIGEK-GGKIVAVSDISGAIKNS 245 (295)
Q Consensus 171 kp~~~GG~-~~r~~aTg~Gv~~~~~~~l~~~g~~l~g~~vaIqGf---GnVG~~~a~~L~~~-G~kvVaVsD~~G~iy~~ 245 (295)
.|+..+|. ...-+.-+..=.+++++-...+|..++|+||+++|- +||...++..+... |++|+ + ..|
T Consensus 205 vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~-l-------~~P 276 (429)
T PRK11891 205 LPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFT-L-------VSP 276 (429)
T ss_pred CCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEE-E-------ECC
Confidence 88887775 232233333334444432211122489999999998 59999999988876 99987 3 345
Q ss_pred CCCCH-HHHHHHHHh
Q 036924 246 KGIDV-PSLLKHVKE 259 (295)
Q Consensus 246 ~GlD~-~~l~~~~~~ 259 (295)
.|+++ +++.+..++
T Consensus 277 ~~~~~~~~~~~~~~~ 291 (429)
T PRK11891 277 PTLEMPAYIVEQISR 291 (429)
T ss_pred CccccCHHHHHHHHh
Confidence 56543 444444443
No 393
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=84.24 E-value=4.5 Score=38.51 Aligned_cols=36 Identities=22% Similarity=0.159 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.++++|+|+|-|++|..+|..|.+.|.+-|.|.+..
T Consensus 170 ~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 170 VEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 458999999999999999999998998734466543
No 394
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=84.24 E-value=3.4 Score=38.72 Aligned_cols=75 Identities=24% Similarity=0.262 Sum_probs=50.3
Q ss_pred CCEEEEEcC-cHHHHHHHHHHHHC-CCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCC-CCccccCc
Q 036924 206 GQRFVIQGF-GNVGSWAARLIGEK-GGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDS-NSILIEDC 282 (295)
Q Consensus 206 g~~vaIqGf-GnVG~~~a~~L~~~-G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~-~~~l~~~~ 282 (295)
.+||+|.|+ |.+|+.+++.+.+. ++.+++..|+.+... .|-|..++.. .+.+ +. .+.+ ..+...++
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~--~g~d~ge~~g----~~~~----gv-~v~~~~~~~~~~~ 70 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLS--LGSDAGELAG----LGLL----GV-PVTDDLLLVKADA 70 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccc--cccchhhhcc----cccc----Cc-eeecchhhcccCC
Confidence 368999999 99999999999865 599999999876533 2445544421 0111 11 2333 34447899
Q ss_pred eEEeccccc
Q 036924 283 DVLIPAALG 291 (295)
Q Consensus 283 DvlipaA~~ 291 (295)
||+|+-+..
T Consensus 71 DV~IDFT~P 79 (266)
T COG0289 71 DVLIDFTTP 79 (266)
T ss_pred CEEEECCCc
Confidence 999987654
No 395
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=84.17 E-value=1.6 Score=41.91 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=29.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.+|+|+|-|.+|..+|..|.+.|.+|+ |.|..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~-l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVA-VIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEE-EEcCC
Confidence 579999999999999999999999997 88854
No 396
>PRK05876 short chain dehydrogenase; Provisional
Probab=84.17 E-value=1.9 Score=39.47 Aligned_cols=35 Identities=23% Similarity=0.497 Sum_probs=30.3
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++++++.|.| .|.+|+++|+.|.++|++|+ ++|.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv-~~~r~ 39 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVV-LGDVD 39 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeCC
Confidence 6789999998 68999999999999999987 55553
No 397
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.16 E-value=2 Score=41.52 Aligned_cols=44 Identities=25% Similarity=0.403 Sum_probs=38.6
Q ss_pred HHHHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 195 ALLNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 195 ~~l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..|++.|.. .|++|.|.|.|.+|.-+.++-..+|++|++|+-++
T Consensus 172 spLk~~g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~ 215 (360)
T KOG0023|consen 172 SPLKRSGLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSS 215 (360)
T ss_pred ehhHHcCCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCc
Confidence 456777887 89999999999999999998889999999998774
No 398
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.15 E-value=1.9 Score=39.03 Aligned_cols=35 Identities=23% Similarity=0.436 Sum_probs=30.1
Q ss_pred CCCCCEEEEEcC---cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 203 NIAGQRFVIQGF---GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 203 ~l~g~~vaIqGf---GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+++++++.|.|- +.+|+.+|+.|.+.|++|+ +.+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~-~~~r 41 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLV-FTYA 41 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EecC
Confidence 468999999997 5899999999999999988 4444
No 399
>PLN00198 anthocyanidin reductase; Provisional
Probab=84.14 E-value=1.9 Score=40.48 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=30.0
Q ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVs 236 (295)
+.++++|.|.| .|-+|+++++.|.++|++|+++.
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 35688999999 79999999999999999997654
No 400
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=84.14 E-value=1.9 Score=38.32 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=29.7
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+++++|.|.|. |.+|.++++.|.+.|++|+. .|.
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~-~~r 44 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGATVIL-LGR 44 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCcEEE-EeC
Confidence 68899999984 89999999999999999985 444
No 401
>PLN02214 cinnamoyl-CoA reductase
Probab=84.13 E-value=1.9 Score=40.93 Aligned_cols=34 Identities=24% Similarity=0.522 Sum_probs=30.5
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEec
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD 237 (295)
+++++|.|.|. |-+|+++++.|.++|++|++++.
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r 42 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVR 42 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 57889999997 99999999999999999987653
No 402
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.05 E-value=1.2 Score=45.61 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=28.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
-.+.|.|+|++|+.+++.|.++|..++ +.|.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId~d 449 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIETS 449 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEECC
Confidence 478999999999999999999999998 55654
No 403
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=84.03 E-value=3.7 Score=38.73 Aligned_cols=34 Identities=26% Similarity=0.596 Sum_probs=28.6
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCE-EEEEecC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGK-IVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~k-vVaVsD~ 238 (295)
..|.+|+|.|.|.||..+++++...|++ |+ ++|.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi-~~~~ 202 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIV-CADV 202 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEE-EEeC
Confidence 3688999999999999999999999994 66 4443
No 404
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=83.91 E-value=2.5 Score=40.74 Aligned_cols=33 Identities=24% Similarity=0.588 Sum_probs=29.2
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEec
Q 036924 205 AGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 205 ~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD 237 (295)
.+++|.|.|. |-+|+|+++.|.++|++|.|...
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR 38 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVR 38 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEc
Confidence 5789999995 99999999999999999996443
No 405
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.90 E-value=1.5 Score=43.15 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=27.8
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++|.|.|+|.-|.++|++|+ +|+.|+ ++|.+
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~-~~D~~ 31 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVD-IFDDK 31 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEE-EEcCC
Confidence 47899999999999999999 999987 89854
No 406
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=83.84 E-value=2.2 Score=38.37 Aligned_cols=33 Identities=18% Similarity=0.410 Sum_probs=29.4
Q ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEE
Q 036924 203 NIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaV 235 (295)
+++++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~ 39 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNA 39 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 47889999999 5899999999999999999844
No 407
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=83.82 E-value=2.2 Score=39.62 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=30.2
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 205 AGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 205 ~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
.|++|.|.| .|-+|+++++.|.++|++|+++.+.
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 578999999 5999999999999999999877654
No 408
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=83.82 E-value=3.6 Score=38.82 Aligned_cols=41 Identities=27% Similarity=0.488 Sum_probs=32.9
Q ss_pred HHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEec
Q 036924 197 LNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGG-KIVAVSD 237 (295)
Q Consensus 197 l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~-kvVaVsD 237 (295)
+...+..-.+.+|.|.|.|.||+.+++++...|+ +|++++.
T Consensus 169 l~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~ 210 (361)
T cd08231 169 LDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDG 210 (361)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3444443378899999999999999999999999 8886653
No 409
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=83.82 E-value=1.6 Score=43.78 Aligned_cols=35 Identities=31% Similarity=0.424 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
...++|+|+|.|..|..+|+.|.+.|.+|+ |-+.+
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~-vfE~~ 42 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVV-VFERE 42 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEE-EEecC
Confidence 456899999999999999999999999988 77653
No 410
>PRK08264 short chain dehydrogenase; Validated
Probab=83.80 E-value=2 Score=37.75 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=28.7
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHCCC-EEEEEe
Q 036924 204 IAGQRFVIQG-FGNVGSWAARLIGEKGG-KIVAVS 236 (295)
Q Consensus 204 l~g~~vaIqG-fGnVG~~~a~~L~~~G~-kvVaVs 236 (295)
++++++.|.| .|.+|+++|+.|.++|+ +|+.++
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 5778999999 59999999999999999 877554
No 411
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=83.73 E-value=1.6 Score=41.22 Aligned_cols=31 Identities=23% Similarity=0.264 Sum_probs=27.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEec
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD 237 (295)
+||+|.|.|.||..++-.|.+.|..|+-|.-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r 33 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILR 33 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 5899999999999999999999998875544
No 412
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=83.68 E-value=5.4 Score=36.33 Aligned_cols=66 Identities=8% Similarity=-0.057 Sum_probs=52.8
Q ss_pred CCCCCchHHHHHHHHHHHHHH-cCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECC
Q 036924 179 LGRDAATGRGVLFAMEALLNE-HGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNS 245 (295)
Q Consensus 179 ~~r~~aTg~Gv~~~~~~~l~~-~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~ 245 (295)
.|.-..|.|....+.+.+++. ....++...|-|.|.|. =..+.+.|+..|.+|..|.|...--+|-
T Consensus 155 KGsKKsTpfAAQ~aae~aakka~~~GIk~V~V~vKGpGg-REtALRaL~~~GLkIt~I~DvTpiPHNG 221 (233)
T PTZ00090 155 RKKLQQSERCAYRIGENIAKKCRRLGIFAVDIKFRRIMR-VETVLQAFYANGLQVTQIIHEPRLPKCG 221 (233)
T ss_pred ccCccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeCCCh-HHHHHHHHHHCCCEEEEEEECCCCCcCC
Confidence 456678999988888888873 34567888999999995 4567788999999999999987666653
No 413
>PRK06196 oxidoreductase; Provisional
Probab=83.62 E-value=2.3 Score=39.66 Aligned_cols=36 Identities=17% Similarity=0.482 Sum_probs=31.2
Q ss_pred CCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 201 GKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 201 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
..++++++|.|.|- |.+|+++++.|.++|++|+.++
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPA 57 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 34578999999996 8999999999999999998544
No 414
>PRK08265 short chain dehydrogenase; Provisional
Probab=83.59 E-value=2.3 Score=38.33 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+++++++.|.|- |.+|+.+|+.|.++|++|+ +.|.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~-~~~r 38 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVA-IVDI 38 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEeC
Confidence 367899999995 9999999999999999988 4454
No 415
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.59 E-value=2.1 Score=39.12 Aligned_cols=34 Identities=15% Similarity=0.404 Sum_probs=29.6
Q ss_pred CCCCEEEEEcCc---HHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGFG---NVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGfG---nVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++++++.|.|-+ .+|+.+|+.|.+.|++|+ +.+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vi-l~~r 40 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTYQ 40 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEE-EEec
Confidence 678999999986 699999999999999987 5554
No 416
>PRK07890 short chain dehydrogenase; Provisional
Probab=83.58 E-value=2 Score=38.12 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=29.7
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++++++.|.|- |.+|+++|+.|.++|++|+ +.++
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~-~~~r 37 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVV-LAAR 37 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEE-EEeC
Confidence 57899999995 8999999999999999988 4554
No 417
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=83.58 E-value=4.3 Score=37.16 Aligned_cols=40 Identities=33% Similarity=0.513 Sum_probs=31.3
Q ss_pred HHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCE-EEEEecC
Q 036924 197 LNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGK-IVAVSDI 238 (295)
Q Consensus 197 l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~k-vVaVsD~ 238 (295)
+++.+. ..|.+|+|.|.|.||..+++++..+|++ |+++ |.
T Consensus 113 l~~~~~-~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~-~~ 153 (280)
T TIGR03366 113 LEAAGD-LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAA-DP 153 (280)
T ss_pred HHhccC-CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE-CC
Confidence 343333 3788999999999999999999999997 6654 54
No 418
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=83.57 E-value=1.6 Score=41.34 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=32.6
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++..+|.|.|.|.+|..+|+.|...|.+=+.+.|.+
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 577899999999999999999999998877788865
No 419
>PRK06194 hypothetical protein; Provisional
Probab=83.51 E-value=2.3 Score=38.70 Aligned_cols=34 Identities=35% Similarity=0.417 Sum_probs=29.3
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++++++.|.|- |.+|+++++.|.++|++|+. .|.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~-~~r 38 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVL-ADV 38 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEE-EeC
Confidence 56789999995 89999999999999999884 444
No 420
>PRK06172 short chain dehydrogenase; Provisional
Probab=83.44 E-value=2.2 Score=37.92 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
.++++++.|.|- |.+|+++++.|.++|++|+.+ ++
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~-~r 39 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVA-DR 39 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE-eC
Confidence 367899999995 899999999999999998854 44
No 421
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=83.39 E-value=2.2 Score=38.16 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=29.7
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaV 235 (295)
+++++++.|.|- |.+|+++++.|.++|++|+++
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 478999999995 789999999999999999865
No 422
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=83.37 E-value=2 Score=36.64 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=30.2
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 208 RFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
+++|.|.|+.|+.+++.|.+.|.+++++.|.+-
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~ 33 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNP 33 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCc
Confidence 478999999999999999999999999998763
No 423
>PRK12939 short chain dehydrogenase; Provisional
Probab=83.36 E-value=2.3 Score=37.39 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=29.1
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaV 235 (295)
++++++.|.|- |.+|+++++.|.++|++|+.+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 67899999995 999999999999999999865
No 424
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=83.35 E-value=3.9 Score=39.54 Aligned_cols=35 Identities=23% Similarity=0.440 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
..|.+|+|.|.|.||..++++....|++|+++.++
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 36889999999999999999999999998876543
No 425
>PRK07326 short chain dehydrogenase; Provisional
Probab=83.30 E-value=2.2 Score=37.40 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=28.1
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaV 235 (295)
++++++.|.|- |.+|+++++.|.++|++|+.+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~ 36 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAIT 36 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 45789999985 999999999999999998855
No 426
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=83.19 E-value=2.5 Score=37.61 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=30.9
Q ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 202 KNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
..++++++.|.|- |.+|+.+++.|.++|++|+.+ ++
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~-~r 43 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVN-GR 43 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE-eC
Confidence 3478999999995 899999999999999999854 44
No 427
>PRK07576 short chain dehydrogenase; Provisional
Probab=83.19 E-value=2.4 Score=38.35 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=30.0
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++++.|.|- |.+|+++++.|.++|++|+.+.
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~ 40 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVAS 40 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 368899999996 8999999999999999998553
No 428
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=83.16 E-value=2 Score=40.41 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=30.9
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEec
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD 237 (295)
++++++|.|.|- |-+|+++++.|.++|++|+++..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r 38 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIR 38 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEec
Confidence 467899999995 99999999999999999997653
No 429
>PRK08013 oxidoreductase; Provisional
Probab=83.11 E-value=1.8 Score=41.97 Aligned_cols=34 Identities=26% Similarity=0.195 Sum_probs=29.9
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG 240 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G 240 (295)
...|+|+|-|.+|..+|..|.+.|.+|+ |-|.+-
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~-viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVA-VLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEE-EEeCCC
Confidence 3579999999999999999999999987 888653
No 430
>CHL00194 ycf39 Ycf39; Provisional
Probab=83.07 E-value=2 Score=40.12 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=27.8
Q ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCEEEEEec
Q 036924 207 QRFVIQG-FGNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 207 ~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVsD 237 (295)
+||.|.| .|.+|+++++.|.++|.+|++++-
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEc
Confidence 4899999 599999999999999999998764
No 431
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=83.05 E-value=2.1 Score=41.43 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=30.0
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
...|+|+|-|.+|..+|..|++.|.+|+ |.|..
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~-l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVT-LLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEE-EEccC
Confidence 3579999999999999999999999987 88876
No 432
>PRK08017 oxidoreductase; Provisional
Probab=83.05 E-value=2.2 Score=37.91 Aligned_cols=30 Identities=23% Similarity=0.385 Sum_probs=27.1
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 207 QRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
++|.|.|. |.+|+.+++.|.++|++|+.++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 58999998 9999999999999999998654
No 433
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=82.90 E-value=4.5 Score=39.99 Aligned_cols=35 Identities=34% Similarity=0.546 Sum_probs=31.1
Q ss_pred CCCCCCEEEEEcC-----------------cHHHHHHHHHHHHCCCEEEEEe
Q 036924 202 KNIAGQRFVIQGF-----------------GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 202 ~~l~g~~vaIqGf-----------------GnVG~~~a~~L~~~G~kvVaVs 236 (295)
.+++|++|.|.|- |.+|.++|+.|.++|++|+.++
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 4589999999996 8899999999999999998554
No 434
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=82.88 E-value=2.6 Score=36.75 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=28.7
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++|+|.|- |.+|+++++.|.++|++|+.++
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~ 36 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYD 36 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 56789999995 9999999999999999987554
No 435
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=82.87 E-value=3 Score=37.37 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=30.3
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEec
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD 237 (295)
+++++++.|.|- |.+|+++|+.|.++|++|+.++.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 478999999995 89999999999999999985444
No 436
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=82.83 E-value=5.7 Score=33.32 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=48.0
Q ss_pred CchHHHHHHHHHHHHH-HcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 183 AATGRGVLFAMEALLN-EHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 183 ~aTg~Gv~~~~~~~l~-~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..|-|-...+.+.+.+ .+...++..-|.|.|+|.--..+.+.|+..|.+|.-|.|..
T Consensus 57 k~tpyAA~~aa~~aa~~a~e~Gi~~v~v~vkgpG~GreaAiraL~~ag~~i~~I~DvT 114 (129)
T COG0100 57 KSTPYAAQLAAEDAAKKAKEHGIKSVEVKVKGPGPGREAAIRALAAAGLKITRIEDVT 114 (129)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCccEEEEEEECCCCcHHHHHHHHHHccceEEEEEEcC
Confidence 7787877777776666 34455788899999999999999999999999999999975
No 437
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=82.78 E-value=2.7 Score=37.49 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=30.2
Q ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 203 NIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+++++++.|.| .|.+|+++++.|.++|++|+ +.++
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vv-l~~r 41 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEII-INDI 41 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEE-EEcC
Confidence 46789999998 48999999999999999998 4554
No 438
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=82.74 E-value=2.5 Score=37.71 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=29.4
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++++++.|.|- |.+|+++|+.|.++|++|+. .|.
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~-~~r 38 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVI-ADI 38 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEE-EcC
Confidence 56889999995 99999999999999999984 444
No 439
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.71 E-value=2.7 Score=38.94 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=29.7
Q ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Q 036924 202 KNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaV 235 (295)
..++++++.|.|- |.+|+++|+.|.++|++|+.+
T Consensus 36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~ 70 (293)
T PRK05866 36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAV 70 (293)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3467899999995 999999999999999999854
No 440
>PRK12937 short chain dehydrogenase; Provisional
Probab=82.68 E-value=2.8 Score=36.80 Aligned_cols=34 Identities=15% Similarity=0.260 Sum_probs=29.5
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEec
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD 237 (295)
++++++.|.|- |.+|+++|+.|.++|++++.+..
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 57889999995 99999999999999999885543
No 441
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=82.68 E-value=2.3 Score=41.01 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=28.5
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHC-CCEEEEEecCC
Q 036924 207 QRFVIQGF-GNVGSWAARLIGEK-GGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~~-G~kvVaVsD~~ 239 (295)
++|+|.|. |-||+.+++.|.++ ..+++++.+++
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~ 35 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSR 35 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccc
Confidence 48999998 99999999999976 78999876654
No 442
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.68 E-value=2.2 Score=38.16 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=29.3
Q ss_pred CCCCCEEEEEcC---cHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGF---GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGf---GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++++.|.|- |.+|..+++.|.++|++|+.++
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~ 38 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTY 38 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEc
Confidence 467899999996 4799999999999999998553
No 443
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=82.68 E-value=1.8 Score=47.42 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..|++|||+|.|..|..+|..|.++|++|+ |-|..
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~Vt-VfE~~ 338 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVT-VFEAF 338 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEE-EEeeC
Confidence 568999999999999999999999999988 77753
No 444
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.66 E-value=2.8 Score=36.59 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++.++|.|.|. |.+|+.+++.|.++|++|+.++.+
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 45689999985 999999999999999998765554
No 445
>PRK08291 ectoine utilization protein EutC; Validated
Probab=82.66 E-value=8.2 Score=36.82 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=28.1
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHH-CCCEEEEEecCC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGE-KGGKIVAVSDIS 239 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~-~G~kvVaVsD~~ 239 (295)
..++++|+|.|..|++.+..|.. .+.+-|.|.+.+
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~ 166 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD 166 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 45799999999999998888875 567777677664
No 446
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=82.66 E-value=1.8 Score=42.22 Aligned_cols=32 Identities=31% Similarity=0.514 Sum_probs=28.4
Q ss_pred CEEEEEcCcHHHHHHHHHHHHC-----CCEEEEEecC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEK-----GGKIVAVSDI 238 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~-----G~kvVaVsD~ 238 (295)
.||+|-|||-+|+.+.|.+.+. ...||||-|.
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~ 40 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDM 40 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCC
Confidence 5999999999999999998764 5899999884
No 447
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=82.60 E-value=1.7 Score=41.36 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=25.1
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEecCC
Q 036924 208 RFVIQGFGNVGSWAARLIGEKGG-KIVAVSDIS 239 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G~-kvVaVsD~~ 239 (295)
+|+|+|.|+||+.+|..|..++. .=+.+-|.+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 58999999999999999987774 323366763
No 448
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=82.58 E-value=1.9 Score=41.28 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=29.7
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
+...|+|+|.|.+|..+|..|.++|.+|+ |.|.+
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~G~~v~-liE~~ 39 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARAGASVA-LVAPE 39 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCeEE-EEeCC
Confidence 34579999999999999999999999987 77764
No 449
>PRK12746 short chain dehydrogenase; Provisional
Probab=82.57 E-value=2.9 Score=37.08 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=28.8
Q ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEE
Q 036924 203 NIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaV 235 (295)
+++++++.|.| .|.+|+++|+.|.++|++|+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 36788999999 5999999999999999998743
No 450
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=82.56 E-value=11 Score=36.02 Aligned_cols=108 Identities=9% Similarity=0.031 Sum_probs=62.7
Q ss_pred HHHHHHHhhcCCCCcccC--CCCCC-CHHHHHHHHHHhchhc---CCCC------ccccCccccCCCCCCCCCchHHHHH
Q 036924 123 VFTQKIHDLIGIHADVPA--PDMGT-GPQTMAWILDEYSKFH---GHSP------AVVTGKPIDLGGSLGRDAATGRGVL 190 (295)
Q Consensus 123 ~f~~~l~~~iG~~~dipa--pDvgt-~~~~m~w~~d~~~~~~---g~~~------~~~tGkp~~~GG~~~r~~aTg~Gv~ 190 (295)
+|-.++..+-|....+.. .+++. +.++.+.+.+.|...- .... .-....|+..+|+...-+.-+.-=.
T Consensus 60 SFe~A~~~LGg~~i~l~~~~~~~~~~~~~dt~~vls~~~D~iv~R~~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl 139 (311)
T PRK14804 60 SFEVAMTEMGGHGIYLDWMASNFQLSDIDLEARYLSRNVSVIMARLKKHEDLLVMKNGSQVPVINGCDNMFHPCQSLADI 139 (311)
T ss_pred HHHHHHHHcCCeEEEeCCCccccccccHHHHHHHHHhcCCEEEEeCCChHHHHHHHHHCCCCEEECCCCCCChHHHHHHH
Confidence 677777776665544433 22222 2234455555554321 1100 1124568877775532222222223
Q ss_pred HHHHHHHHHcCC-CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEE
Q 036924 191 FAMEALLNEHGK-NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIV 233 (295)
Q Consensus 191 ~~~~~~l~~~g~-~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvV 233 (295)
+++++ +.|. +++|+||+++|- +||...++..+...|+.|.
T Consensus 140 ~Ti~e---~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~ 181 (311)
T PRK14804 140 MTIAL---DSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLT 181 (311)
T ss_pred HHHHH---HhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEE
Confidence 34433 4564 689999999996 7999999999999999887
No 451
>PRK06398 aldose dehydrogenase; Validated
Probab=82.53 E-value=2.7 Score=37.93 Aligned_cols=34 Identities=12% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++++.|.|- |.+|+++|+.|.+.|++|+.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~ 37 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFD 37 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 478899999995 7999999999999999998544
No 452
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=82.47 E-value=2.4 Score=42.10 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=32.2
Q ss_pred cCCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 200 HGKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 200 ~g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+|+.-+.+||.|.|- |-||+++++.|.++|.+|+++.
T Consensus 114 ~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 114 VGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred cccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEe
Confidence 456667899999995 9999999999999999999764
No 453
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=82.47 E-value=2.6 Score=41.07 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=31.9
Q ss_pred CCCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 201 GKNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 201 g~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+...++++|.|.|- |.+|+++++.|.++|++|++++
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~ 91 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVA 91 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 45578899999996 9999999999999999999765
No 454
>PRK12831 putative oxidoreductase; Provisional
Probab=82.41 E-value=2.1 Score=42.74 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
-.+++|+|+|.|..|..+|..|.++|++|+ |.|.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~-v~e~ 171 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVT-IFEA 171 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEE-EEec
Confidence 468999999999999999999999999987 6664
No 455
>PLN02852 ferredoxin-NADP+ reductase
Probab=82.37 E-value=1.9 Score=43.79 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=30.7
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHH--CCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGE--KGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~--~G~kvVaVsD~~ 239 (295)
..+++|+|+|.|..|.++|+.|.+ .|++|+ |.|..
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vt-v~E~~ 60 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVD-IIERL 60 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEE-EEecC
Confidence 457899999999999999999986 799988 78765
No 456
>PRK06197 short chain dehydrogenase; Provisional
Probab=82.35 E-value=2.5 Score=39.16 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=30.6
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEec
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD 237 (295)
++++++|.|.|- |.+|+++|+.|.++|++|+.++.
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 478899999995 99999999999999999986543
No 457
>PRK06182 short chain dehydrogenase; Validated
Probab=82.32 E-value=2.6 Score=38.11 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=28.4
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 205 AGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 205 ~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++.|.|. |.+|+++++.|.++|++|++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAA 34 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 5789999995 9999999999999999998654
No 458
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=82.31 E-value=2.3 Score=41.44 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=29.7
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
...++|+|+| .|.+|+++|+.|.+.|..|. +.|.+
T Consensus 96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~-~~d~~ 131 (374)
T PRK11199 96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVR-ILEQD 131 (374)
T ss_pred cccceEEEEcCCChhhHHHHHHHHHCCCeEE-EeCCC
Confidence 3458999999 99999999999999999877 55653
No 459
>PRK09135 pteridine reductase; Provisional
Probab=82.17 E-value=3 Score=36.56 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=29.4
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEec
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSD 237 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD 237 (295)
.++++|.|.|. |.+|+++++.|.++|++|+.++-
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 45689999995 99999999999999999986653
No 460
>PRK07814 short chain dehydrogenase; Provisional
Probab=82.11 E-value=2.7 Score=37.88 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=30.0
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+++++++.|.|. |.+|+++++.|.++|++|+.+ ++
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~-~r 42 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIA-AR 42 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE-eC
Confidence 367899999996 679999999999999999854 44
No 461
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=82.10 E-value=2.9 Score=37.40 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=29.4
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaV 235 (295)
++++++|.|.|- |.+|+.+++.|.++|++|+.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 45 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIIT 45 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 478999999995 899999999999999999844
No 462
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=82.10 E-value=4.4 Score=37.84 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=31.1
Q ss_pred HHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCE-EEEEe
Q 036924 198 NEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGK-IVAVS 236 (295)
Q Consensus 198 ~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~k-vVaVs 236 (295)
+..+.. .|.+|+|.|.|.||..+++++...|++ |++++
T Consensus 157 ~~~~~~-~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~ 195 (339)
T cd08239 157 RRVGVS-GRDTVLVVGAGPVGLGALMLARALGAEDVIGVD 195 (339)
T ss_pred HhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 334433 588999999999999999999999999 88643
No 463
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=82.07 E-value=1.6 Score=45.18 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=28.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.+|+|.|||.+|+.+++.|.++|..++ +.|.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~d 432 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRIT-VLERD 432 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEE-EEECC
Confidence 589999999999999999999999998 56664
No 464
>PRK07062 short chain dehydrogenase; Provisional
Probab=82.06 E-value=2.9 Score=37.47 Aligned_cols=36 Identities=19% Similarity=0.298 Sum_probs=30.9
Q ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 202 KNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
.+++++++.|.|- +.+|+++++.|.++|++|+. .+.
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~-~~r 40 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAI-CGR 40 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEE-EeC
Confidence 4578999999996 78999999999999999984 444
No 465
>PRK07577 short chain dehydrogenase; Provisional
Probab=82.05 E-value=2.8 Score=36.68 Aligned_cols=32 Identities=9% Similarity=0.320 Sum_probs=28.5
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 205 AGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 205 ~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++.|.|. |.+|+++++.|.++|++|+.++
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~ 34 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIA 34 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 5688999986 8999999999999999999665
No 466
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=82.02 E-value=5.3 Score=37.36 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=30.6
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
-.|.+|.|.|. |.||..+++++..+|++|++++.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~ 185 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS 185 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 36889999997 999999999999999999876643
No 467
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=82.00 E-value=1.9 Score=43.45 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=28.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.+|+|+|.|+.|+++|+.|.++|.+|+ +-|.+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~-v~dr~ 33 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKIS-VYNRT 33 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEE-EEeCC
Confidence 479999999999999999999999976 55653
No 468
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=81.97 E-value=5 Score=38.16 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=30.4
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
-.|.+|.|.|. |.||..+++++..+|++|++++.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~ 192 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS 192 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC
Confidence 36889999999 999999999999999999876543
No 469
>PRK06847 hypothetical protein; Provisional
Probab=81.95 E-value=2.1 Score=40.58 Aligned_cols=33 Identities=24% Similarity=0.217 Sum_probs=29.1
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.++|+|+|.|..|..+|..|.+.|.+|+ |-|.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~-v~E~~ 36 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVD-LVEID 36 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEE-EEecC
Confidence 4689999999999999999999999987 76653
No 470
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=81.93 E-value=1.8 Score=41.78 Aligned_cols=31 Identities=39% Similarity=0.641 Sum_probs=27.3
Q ss_pred EEEEEcCcHHHHHHHHHHHHC---CCEEEEEecC
Q 036924 208 RFVIQGFGNVGSWAARLIGEK---GGKIVAVSDI 238 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~---G~kvVaVsD~ 238 (295)
||+|-|||-+|+.+.|.+.+. ..+||+|-|.
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~ 34 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL 34 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC
Confidence 689999999999999998765 6899999875
No 471
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.91 E-value=2.9 Score=38.97 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=31.2
Q ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 202 KNIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 202 ~~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
.+++++++.|.|- |.+|+++|+.|.++|++|+ +.|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv-~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVV-VNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EecC
Confidence 4588999999985 8899999999999999988 5554
No 472
>PRK07035 short chain dehydrogenase; Provisional
Probab=81.86 E-value=3 Score=37.06 Aligned_cols=34 Identities=21% Similarity=0.524 Sum_probs=29.8
Q ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++++.|.| .|.+|.++++.|.++|++|+.++
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 47789999998 59999999999999999998553
No 473
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=81.86 E-value=41 Score=31.94 Aligned_cols=125 Identities=17% Similarity=0.195 Sum_probs=75.9
Q ss_pred HHHHHHHhhcCCCCcccC-C----CCCCCHHHHHHHHHHhchh---cCCC------CccccCccccCCCCCC-CCCchHH
Q 036924 123 VFTQKIHDLIGIHADVPA-P----DMGTGPQTMAWILDEYSKF---HGHS------PAVVTGKPIDLGGSLG-RDAATGR 187 (295)
Q Consensus 123 ~f~~~l~~~iG~~~dipa-p----Dvgt~~~~m~w~~d~~~~~---~g~~------~~~~tGkp~~~GG~~~-r~~aTg~ 187 (295)
+|-.++..+-|....+.. . .-|-+-+|.+.+...|... +... -+-..+.|+..+|+.. .-+.-+.
T Consensus 56 SFe~A~~~LGg~~i~l~~~~~s~~~kgEsi~Dta~vls~y~D~iviR~~~~~~~~~~a~~s~vPVINa~~g~~~HPtQ~L 135 (301)
T TIGR00670 56 SFETAMKRLGGDVVNFSDSETSSVAKGETLADTIKTLSGYSDAIVIRHPLEGAARLAAEVSEVPVINAGDGSNQHPTQTL 135 (301)
T ss_pred HHHHHHHHcCCcEEEcCCCCcccCCCCcCHHHHHHHHHHhCCEEEEECCchhHHHHHHhhCCCCEEeCCCCCCCCcHHHH
Confidence 677777777665544433 2 2345567777777777432 1111 1233678888777632 2223333
Q ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEcC---cHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCC-HHHHHHHHHh
Q 036924 188 GVLFAMEALLNEHGKNIAGQRFVIQGF---GNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGID-VPSLLKHVKE 259 (295)
Q Consensus 188 Gv~~~~~~~l~~~g~~l~g~~vaIqGf---GnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD-~~~l~~~~~~ 259 (295)
.=.+++++ +.| +++|+||++.|- +||...++..+...|+.|. + ..|.|++ .+++.+..++
T Consensus 136 aDl~Ti~e---~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~-~-------~~P~~~~~~~~~~~~~~~ 199 (301)
T TIGR00670 136 LDLYTIYE---EFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVY-L-------ISPEELRMPKEILEELKA 199 (301)
T ss_pred HHHHHHHH---HhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEE-E-------ECCccccCCHHHHHHHHH
Confidence 33344443 345 589999999998 4999999999999999987 3 3455653 3455544433
No 474
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=81.83 E-value=2.1 Score=44.52 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=30.5
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.+++|+|+|.|..|..+|..|.++|++|+ |.|..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vt-v~e~~ 342 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVD-VFDRH 342 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEE-EEeCC
Confidence 68999999999999999999999999986 66653
No 475
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=81.82 E-value=2.2 Score=42.59 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=30.1
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
..+++|+|+|.|..|..+|..|.++|.+|+ |.|.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~-vie~ 174 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVT-VFER 174 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEE-EEec
Confidence 357899999999999999999999999987 6664
No 476
>PRK07856 short chain dehydrogenase; Provisional
Probab=81.79 E-value=3.2 Score=36.96 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=29.7
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++++.|.|- |.+|+.+++.|.++|++|+.++
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~ 37 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCG 37 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 478999999995 8999999999999999998543
No 477
>PRK11579 putative oxidoreductase; Provisional
Probab=81.75 E-value=2.5 Score=40.30 Aligned_cols=33 Identities=30% Similarity=0.434 Sum_probs=27.2
Q ss_pred CEEEEEcCcHHHH-HHHHHHHH-CCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGS-WAARLIGE-KGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~-~~a~~L~~-~G~kvVaVsD~~ 239 (295)
.||+|+|+|.+|. ..+..+.. .+++++||+|.+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~ 39 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSD 39 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCC
Confidence 6999999999997 45666654 479999999985
No 478
>PLN02858 fructose-bisphosphate aldolase
Probab=81.72 E-value=3 Score=47.50 Aligned_cols=63 Identities=24% Similarity=0.313 Sum_probs=0.0
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCceEECCCCCCHHHHHHHHHhcCCcccCCCCeeeCCCCccccCceEEe
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISGAIKNSKGIDVPSLLKHVKEHRGVKGFSGGDSIDSNSILIEDCDVLI 286 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G~iy~~~GlD~~~l~~~~~~~g~~~~~~~~~~~~~~~~l~~~~Dvli 286 (295)
++|.++|+|++|..+|+.|...|++|+ +.|.+ .+++.+..+. ++...+..+-+..+|||++
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~-v~dr~----------~~~~~~l~~~--------Ga~~~~s~~e~~~~aDvVi 385 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVC-GYDVY----------KPTLVRFENA--------GGLAGNSPAEVAKDVDVLV 385 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEE-EEeCC----------HHHHHHHHHc--------CCeecCCHHHHHhcCCEEE
Q ss_pred cc
Q 036924 287 PA 288 (295)
Q Consensus 287 pa 288 (295)
-|
T Consensus 386 ~~ 387 (1378)
T PLN02858 386 IM 387 (1378)
T ss_pred Ee
No 479
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=81.70 E-value=3.2 Score=37.07 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=30.2
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEecC
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
+++++++.|.|- |.+|+++|+.|.++|++|+. .++
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~-~~r 44 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVL-SAR 44 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEE-EeC
Confidence 468899999995 99999999999999999884 444
No 480
>PRK06914 short chain dehydrogenase; Provisional
Probab=81.69 E-value=3.1 Score=37.67 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=28.1
Q ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEe
Q 036924 205 AGQRFVIQG-FGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 205 ~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaVs 236 (295)
+++++.|.| .|.+|+++++.|.++|++|++++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~ 34 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATM 34 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEe
Confidence 567888988 59999999999999999998664
No 481
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=81.69 E-value=2.7 Score=40.38 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=28.4
Q ss_pred CEEEEEcC-cHHHHHHHHHHHHCC-CEEEEEecCC
Q 036924 207 QRFVIQGF-GNVGSWAARLIGEKG-GKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGf-GnVG~~~a~~L~~~G-~kvVaVsD~~ 239 (295)
+||+|.|. |-+|+.++++|.++. ++|+++++++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~ 35 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASP 35 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEECh
Confidence 48999995 999999999998876 7999997764
No 482
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=81.67 E-value=2.8 Score=36.94 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=28.4
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaV 235 (295)
++++++.|.|. |.+|+++++.|.++|++|+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 46889999994 999999999999999998854
No 483
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=81.67 E-value=2.2 Score=41.26 Aligned_cols=33 Identities=27% Similarity=0.187 Sum_probs=29.3
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
..+|+|+|.|.+|..+|..|.+.|.+|+ |.|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~-viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIA-VIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEE-EEcCC
Confidence 3579999999999999999999999986 88864
No 484
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.66 E-value=7.7 Score=38.12 Aligned_cols=33 Identities=21% Similarity=0.490 Sum_probs=29.8
Q ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Q 036924 203 NIAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 203 ~l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaV 235 (295)
.++++++.|.|- |.+|..+++.|.++|++|+.+
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~ 240 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCL 240 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 468899999997 999999999999999999854
No 485
>PRK05993 short chain dehydrogenase; Provisional
Probab=81.64 E-value=2.8 Score=38.21 Aligned_cols=32 Identities=22% Similarity=0.498 Sum_probs=28.0
Q ss_pred CCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEe
Q 036924 205 AGQRFVIQGF-GNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 205 ~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaVs 236 (295)
.+++|.|.|. |.+|+++|+.|.++|++|+.++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~ 35 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATC 35 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 3578999997 9999999999999999998543
No 486
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.62 E-value=2.8 Score=36.74 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=29.0
Q ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEE
Q 036924 203 NIAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 203 ~l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaV 235 (295)
+++++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~ 35 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGV 35 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEE
Confidence 36788999998 5899999999999999999854
No 487
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=81.61 E-value=2.1 Score=41.56 Aligned_cols=50 Identities=28% Similarity=0.294 Sum_probs=37.4
Q ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCCc---e-EECCCCCCHHHHHHH
Q 036924 206 GQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDISG---A-IKNSKGIDVPSLLKH 256 (295)
Q Consensus 206 g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~G---~-iy~~~GlD~~~l~~~ 256 (295)
...|+|+|.|..|+.+|..|.+.|++|+ |-|... + ..+..++....+.+.
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~Vl-vlEk~~~~G~k~~~~~~~~~~~l~~l 56 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVL-VLEKGSEPGAKPCCGGGLSPRALEEL 56 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEE-EEecCCCCCCCccccceechhhHHHh
Confidence 3579999999999999999999999998 777643 2 233455665555443
No 488
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=81.60 E-value=5.3 Score=37.53 Aligned_cols=35 Identities=31% Similarity=0.437 Sum_probs=29.0
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
..|.+|+|+|.|.+|..+++++...|+++|.++|+
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~ 193 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI 193 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 35789999999999999999999999985434443
No 489
>PRK10637 cysG siroheme synthase; Provisional
Probab=81.58 E-value=2.1 Score=42.83 Aligned_cols=35 Identities=20% Similarity=0.377 Sum_probs=31.6
Q ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 202 KNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 202 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
++++|++|.|+|-|+|+..=++.|.+.|++|+-||
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~vis 42 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNA 42 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEc
Confidence 46899999999999999998999999999998665
No 490
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=81.57 E-value=2.5 Score=38.88 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=28.0
Q ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 208 RFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 208 ~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.|+|+|-|-+|..+|..|++.|.+|+ |.|..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~-l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVT-LLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEE-EEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEE-EEeec
Confidence 38999999999999999999999998 77665
No 491
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=81.53 E-value=5.2 Score=37.80 Aligned_cols=32 Identities=25% Similarity=0.528 Sum_probs=28.9
Q ss_pred CCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEe
Q 036924 205 AGQRFVIQGFGNVGSWAARLIGEKGGKIVAVS 236 (295)
Q Consensus 205 ~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVs 236 (295)
.|.+|+|.|.|.+|..+++++...|++|+++.
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~ 197 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAID 197 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEc
Confidence 57899999999999999999999999988653
No 492
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.51 E-value=2.5 Score=38.82 Aligned_cols=35 Identities=17% Similarity=0.319 Sum_probs=29.9
Q ss_pred CCCCEEEEEcCc---HHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFG---NVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfG---nVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++++++.|.|-+ .+|+.+|+.|.+.|++|+ +++.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vi-l~~r~ 40 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELA-FTYLN 40 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EEecC
Confidence 578999999974 799999999999999988 55553
No 493
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=81.50 E-value=1.8 Score=43.97 Aligned_cols=32 Identities=31% Similarity=0.322 Sum_probs=28.6
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
.+|+++|.|++|+.+|+.|.++|++|+ |.|.+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~-V~NRt 38 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRT 38 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEE-EECCC
Confidence 479999999999999999999999987 66764
No 494
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=81.49 E-value=1.9 Score=45.14 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=32.9
Q ss_pred CCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecCC
Q 036924 204 IAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDIS 239 (295)
Q Consensus 204 l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~~ 239 (295)
++..||.|.|.|.+|..+|+.|...|.+=+.+.|.+
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 889999999999999999999999998777788865
No 495
>PRK06500 short chain dehydrogenase; Provisional
Probab=81.46 E-value=2.8 Score=36.90 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=28.8
Q ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEE
Q 036924 204 IAGQRFVIQGF-GNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 204 l~g~~vaIqGf-GnVG~~~a~~L~~~G~kvVaV 235 (295)
++++++.|.|- |.+|+++++.|.++|++|+.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAIT 36 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 57889999996 999999999999999999854
No 496
>PRK06545 prephenate dehydrogenase; Validated
Probab=81.45 E-value=1.9 Score=41.68 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=26.1
Q ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 207 QRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 207 ~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++|+|+|.|++|..+|+.|.+.|..+. +.|.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~-i~~~ 31 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVF-IIGY 31 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeE-EEEe
Confidence 479999999999999999999997665 4443
No 497
>PRK10206 putative oxidoreductase; Provisional
Probab=81.43 E-value=2.4 Score=40.65 Aligned_cols=33 Identities=9% Similarity=0.200 Sum_probs=24.3
Q ss_pred CEEEEEcCcHHHH-HHHHHH-HH-CCCEEEEEecCC
Q 036924 207 QRFVIQGFGNVGS-WAARLI-GE-KGGKIVAVSDIS 239 (295)
Q Consensus 207 ~~vaIqGfGnVG~-~~a~~L-~~-~G~kvVaVsD~~ 239 (295)
.||+|+|+|+.+. .-+..+ .. .++.|+||+|.+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~ 37 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRH 37 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCC
Confidence 4899999999775 233444 33 479999999985
No 498
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=81.39 E-value=1.2 Score=41.77 Aligned_cols=30 Identities=40% Similarity=0.490 Sum_probs=25.4
Q ss_pred EEEEcCcHHHHHHHHHHHHCCC-EEEEEecCC
Q 036924 209 FVIQGFGNVGSWAARLIGEKGG-KIVAVSDIS 239 (295)
Q Consensus 209 vaIqGfGnVG~~~a~~L~~~G~-kvVaVsD~~ 239 (295)
|+|+|.|+||..+|..|..+|. .|+ +.|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~-L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVV-LLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEE-EEeCC
Confidence 5899999999999999998875 665 77875
No 499
>PRK08226 short chain dehydrogenase; Provisional
Probab=81.37 E-value=2.8 Score=37.44 Aligned_cols=32 Identities=22% Similarity=0.560 Sum_probs=28.7
Q ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEE
Q 036924 204 IAGQRFVIQG-FGNVGSWAARLIGEKGGKIVAV 235 (295)
Q Consensus 204 l~g~~vaIqG-fGnVG~~~a~~L~~~G~kvVaV 235 (295)
++++++.|.| .|.+|+++++.|.++|++|+.+
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~ 36 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILL 36 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 5788999998 6899999999999999998855
No 500
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=81.34 E-value=6.4 Score=34.56 Aligned_cols=42 Identities=26% Similarity=0.443 Sum_probs=33.0
Q ss_pred HHHcCCCCCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEecC
Q 036924 197 LNEHGKNIAGQRFVIQGFGNVGSWAARLIGEKGGKIVAVSDI 238 (295)
Q Consensus 197 l~~~g~~l~g~~vaIqGfGnVG~~~a~~L~~~G~kvVaVsD~ 238 (295)
++....-.++.+|.|.|.|.+|+.+++++...|.+|++++.+
T Consensus 126 l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~ 167 (271)
T cd05188 126 LRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRS 167 (271)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC
Confidence 333333246889999999999999999999999999866543
Done!