Query 036925
Match_columns 639
No_of_seqs 193 out of 398
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:46:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03407 Nucleotid_trans: Nucl 100.0 3.9E-39 8.4E-44 321.0 19.7 205 153-378 2-212 (212)
2 cd02537 GT8_Glycogenin Glycoge 98.4 1.3E-05 2.9E-10 82.1 17.4 159 131-311 4-170 (240)
3 PLN00176 galactinol synthase 98.3 4.8E-05 1E-09 81.8 18.9 179 125-311 20-226 (333)
4 cd04194 GT8_A4GalT_like A4GalT 98.2 6.5E-05 1.4E-09 76.8 16.4 179 130-311 3-199 (248)
5 cd00505 Glyco_transf_8 Members 98.1 0.00016 3.5E-09 74.2 17.8 179 129-310 3-199 (246)
6 PF01501 Glyco_transf_8: Glyco 98.0 6.2E-05 1.3E-09 75.4 11.3 177 130-309 2-203 (250)
7 cd06914 GT8_GNT1 GNT1 is a fun 97.7 0.00095 2.1E-08 70.3 14.6 153 134-311 8-173 (278)
8 PF05637 Glyco_transf_34: gala 97.4 0.00022 4.7E-09 73.5 5.3 207 126-366 3-231 (239)
9 cd06431 GT8_LARGE_C LARGE cata 97.1 0.014 3.1E-07 61.5 16.0 180 129-311 4-208 (280)
10 PLN03181 glycosyltransferase; 97.1 0.0051 1.1E-07 67.4 12.2 149 124-311 126-308 (453)
11 cd06430 GT8_like_2 GT8_like_2 96.9 0.044 9.4E-07 58.6 16.8 228 129-380 4-267 (304)
12 PRK15171 lipopolysaccharide 1, 96.8 0.02 4.4E-07 61.9 13.7 179 128-310 26-227 (334)
13 PLN03182 xyloglucan 6-xylosylt 96.3 0.027 5.9E-07 61.7 11.1 103 201-311 182-307 (429)
14 COG1442 RfaJ Lipopolysaccharid 96.3 0.074 1.6E-06 57.4 13.9 182 130-312 5-203 (325)
15 PF10250 O-FucT: GDP-fucose pr 95.7 0.0076 1.6E-07 64.6 3.1 56 423-489 10-65 (351)
16 cd06432 GT8_HUGT1_C_like The C 95.5 0.47 1E-05 49.2 15.7 213 129-367 3-240 (248)
17 cd06429 GT8_like_1 GT8_like_1 94.6 0.82 1.8E-05 47.8 14.4 95 195-311 96-201 (257)
18 PF11051 Mannosyl_trans3: Mann 91.4 1.1 2.3E-05 47.1 9.6 96 130-235 4-112 (271)
19 PF03314 DUF273: Protein of un 90.2 1.2 2.7E-05 45.1 8.1 101 198-314 26-131 (222)
20 PLN02910 polygalacturonate 4-a 84.1 3.7 8.1E-05 47.7 8.4 114 189-306 450-580 (657)
21 PLN02829 Probable galacturonos 84.0 5.8 0.00013 46.2 9.9 107 198-308 442-564 (639)
22 KOG3849 GDP-fucose protein O-f 83.9 0.77 1.7E-05 48.1 2.7 25 426-450 44-68 (386)
23 PLN02659 Probable galacturonos 82.5 5.7 0.00012 45.5 9.0 112 191-305 321-455 (534)
24 PLN02870 Probable galacturonos 80.3 6.8 0.00015 44.9 8.6 105 198-305 328-454 (533)
25 PLN02867 Probable galacturonos 78.5 12 0.00025 43.2 9.8 115 191-308 322-459 (535)
26 PLN02523 galacturonosyltransfe 77.7 32 0.00068 39.9 12.9 104 199-306 363-482 (559)
27 PLN02742 Probable galacturonos 74.7 39 0.00084 39.0 12.6 108 197-308 337-460 (534)
28 PLN02769 Probable galacturonos 70.5 72 0.0016 37.6 13.6 36 198-235 437-473 (629)
29 cd02515 Glyco_transf_6 Glycosy 70.0 18 0.00039 38.2 8.0 117 96-230 7-140 (271)
30 PF13704 Glyco_tranf_2_4: Glyc 67.0 57 0.0012 28.0 9.5 80 140-230 5-88 (97)
31 PF00076 RRM_1: RNA recognitio 61.4 13 0.00028 29.3 4.1 50 547-596 6-61 (70)
32 PLN02718 Probable galacturonos 57.7 33 0.00072 40.1 7.8 103 199-305 404-525 (603)
33 cd06273 PBP1_GntR_like_1 This 45.2 2.6E+02 0.0056 27.8 11.4 97 117-216 19-117 (268)
34 KOG4748 Subunit of Golgi manno 44.2 27 0.00059 38.4 4.2 151 199-370 158-335 (364)
35 smart00362 RRM_2 RNA recogniti 44.0 44 0.00095 25.5 4.5 49 547-595 7-60 (72)
36 PF07905 PucR: Purine cataboli 42.3 1.1E+02 0.0025 27.9 7.6 61 123-183 39-108 (123)
37 cd05017 SIS_PGI_PMI_1 The memb 41.9 96 0.0021 28.0 6.9 60 124-184 41-100 (119)
38 PF04765 DUF616: Protein of un 41.0 61 0.0013 35.0 6.2 184 122-312 59-283 (305)
39 cd06299 PBP1_LacI_like_13 Liga 40.6 2.8E+02 0.006 27.6 10.8 95 118-216 20-117 (265)
40 cd06301 PBP1_rhizopine_binding 38.9 4.1E+02 0.0088 26.5 11.8 45 139-183 42-90 (272)
41 cd01543 PBP1_XylR Ligand-bindi 38.5 2.1E+02 0.0045 28.7 9.5 71 143-216 40-110 (265)
42 cd06296 PBP1_CatR_like Ligand- 36.3 4.1E+02 0.0088 26.4 11.3 73 140-216 42-118 (270)
43 cd06308 PBP1_sensor_kinase_lik 35.3 4.5E+02 0.0098 26.3 11.4 65 118-183 20-90 (270)
44 smart00360 RRM RNA recognition 34.3 64 0.0014 24.4 4.0 49 547-595 4-59 (71)
45 cd06283 PBP1_RegR_EndR_KdgR_li 34.3 4.2E+02 0.009 26.2 10.9 94 118-216 20-117 (267)
46 PF03467 Smg4_UPF3: Smg-4/UPF3 34.2 33 0.00072 33.9 2.8 53 546-598 14-79 (176)
47 cd06314 PBP1_tmGBP Periplasmic 30.9 5.1E+02 0.011 25.9 11.0 78 140-218 42-124 (271)
48 cd02071 MM_CoA_mut_B12_BD meth 30.2 2.6E+02 0.0057 25.4 7.9 64 117-180 40-108 (122)
49 cd06292 PBP1_LacI_like_10 Liga 28.1 4.9E+02 0.011 25.9 10.3 74 140-216 42-123 (273)
50 PF00532 Peripla_BP_1: Peripla 27.6 2.9E+02 0.0063 28.7 8.7 95 126-231 31-129 (279)
51 TIGR02417 fruct_sucro_rep D-fr 27.4 6E+02 0.013 26.3 11.1 86 126-216 90-179 (327)
52 PRK10703 DNA-binding transcrip 26.6 6.2E+02 0.013 26.4 11.1 41 142-182 104-147 (341)
53 cd06291 PBP1_Qymf_like Ligand 25.5 5.3E+02 0.012 25.5 9.9 84 127-216 30-113 (265)
54 cd06274 PBP1_FruR Ligand bindi 25.3 5.5E+02 0.012 25.5 10.0 86 127-216 30-117 (264)
55 TIGR01481 ccpA catabolite cont 24.8 5.1E+02 0.011 26.8 10.0 86 126-216 89-177 (329)
56 PRK13402 gamma-glutamyl kinase 24.7 9.8E+02 0.021 26.5 12.9 54 172-231 126-180 (368)
57 COG0263 ProB Glutamate 5-kinas 24.7 6.1E+02 0.013 28.2 10.5 88 139-232 83-183 (369)
58 cd06289 PBP1_MalI_like Ligand- 24.4 5.6E+02 0.012 25.2 9.8 72 142-216 44-118 (268)
59 cd01545 PBP1_SalR Ligand-bindi 24.0 6.8E+02 0.015 24.7 10.4 88 126-216 29-119 (270)
60 PRK11303 DNA-binding transcrip 23.7 7.6E+02 0.016 25.5 11.0 70 143-216 107-180 (328)
61 PF13477 Glyco_trans_4_2: Glyc 23.4 4.7E+02 0.01 23.3 8.3 49 131-181 3-51 (139)
62 cd01541 PBP1_AraR Ligand-bindi 23.0 6.8E+02 0.015 24.9 10.2 74 140-216 42-122 (273)
63 PF14259 RRM_6: RNA recognitio 22.8 1.2E+02 0.0026 24.0 3.8 49 547-595 6-60 (70)
64 cd06293 PBP1_LacI_like_11 Liga 22.6 7.1E+02 0.015 24.7 10.2 95 118-216 20-117 (269)
65 TIGR00524 eIF-2B_rel eIF-2B al 22.5 3.1E+02 0.0066 29.6 7.7 56 125-181 117-185 (303)
66 PRK05429 gamma-glutamyl kinase 22.4 5.6E+02 0.012 28.3 10.0 85 141-231 87-184 (372)
67 cd06300 PBP1_ABC_sugar_binding 22.1 7.9E+02 0.017 24.4 11.6 44 140-183 47-94 (272)
68 cd06313 PBP1_ABC_sugar_binding 22.1 8.2E+02 0.018 24.6 11.1 44 140-183 42-89 (272)
69 PTZ00489 glutamate 5-kinase; P 20.9 5.5E+02 0.012 27.0 9.1 85 141-231 83-180 (264)
70 cd06270 PBP1_GalS_like Ligand 20.0 8.6E+02 0.019 24.1 10.8 87 126-216 29-117 (268)
No 1
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [].
Probab=100.00 E-value=3.9e-39 Score=321.00 Aligned_cols=205 Identities=39% Similarity=0.667 Sum_probs=177.6
Q ss_pred CCCeEEEEEeCHHHHHHHHhCCCCeEecCCC---CCcCccCCCChHHHHHHHhHHHHHHHHHhcCCceEeeecceeEecC
Q 036925 153 GLSNILVGALDTKLVKALYWKGVPVFDMGSH---MSTMDVGWGSPTFHKMGREKAILIDSVLPFGFELLMCDTDMVWLKN 229 (639)
Q Consensus 153 Gv~n~lVvAlD~~t~~~c~~~Gvpcf~~~s~---~~~~~~~~Gs~~f~~m~~~K~~vl~~lL~~Gy~VL~sDvDVVWlrD 229 (639)
.++|++|+|+|+++++.|+++|++|+..... .......+|++.|++++|.|+.+++.+|++||+|+++|+||||+||
T Consensus 2 ~~~~~lv~a~D~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~L~~G~~vl~~D~Dvv~~~d 81 (212)
T PF03407_consen 2 LIDNFLVVALDEETYDALEELGPPCFYFPSDASESEDSAFRFGSKAFQKLTWLKPKVLLDLLELGYDVLFSDADVVWLRD 81 (212)
T ss_pred ccccEEEEEECHHHHHHHHhcCCCeEEEecccccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCCceEEecCCEEEecC
Confidence 4689999999999999999999998887653 3456788999999999999999999999999999999999999999
Q ss_pred CccccccCCCccEEeccCCCCCCccCcchhhhhhcCCcceeeEEEEecChHHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Q 036925 230 PLPYFARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGIFHWRPTESAKKFAKEWKEMILADDKIWDQNGFNELIR 309 (639)
Q Consensus 230 Plpyf~~~~~aDv~vSsD~~~~~~~dd~le~w~~~~~~~NtGf~~~R~T~~s~~f~~~W~~~l~~~~~~~DQ~afN~ll~ 309 (639)
|+++| .++++||++|+|+......+ +.+..+|+||||+|+|+++++|++.|.+.+...++.+||.+||.+++
T Consensus 82 p~~~~-~~~~~Di~~~~d~~~~~~~~-------~~~~~~n~G~~~~r~t~~~~~~~~~w~~~~~~~~~~~DQ~~~n~~l~ 153 (212)
T PF03407_consen 82 PLPYF-ENPDADILFSSDGWDGTNSD-------RNGNLVNTGFYYFRPTPRTIAFLEDWLERMAESPGCWDQQAFNELLR 153 (212)
T ss_pred cHHhh-ccCCCceEEecCCCcccchh-------hcCCccccceEEEecCHHHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999 34899999999987644221 12456799999999999999999999999988878899999999998
Q ss_pred hhcCCCCCCCccceeeccCceEEEeccccccCCCcchhhh-hhhhcC--CcceEEEEecccCCCchhHHHHH
Q 036925 310 RQLGPSVSEDSELVYAYDGNLKLGVLPASIFCSGHTYFVQ-AMYKQL--RLEPYAVHTTFQYAGTEGKRHRL 378 (639)
Q Consensus 310 ~~~~~~~~~~~~l~~a~~~~l~v~~Lp~~~F~nGh~yF~q-~l~~~~--~~~pyvVHan~~~~G~~~Kr~RL 378 (639)
+.... .+++++++||..+||||++||++ +.++.. +.+||+||+|| +.|.++|++||
T Consensus 154 ~~~~~------------~~~~~~~~L~~~~f~~g~~~f~~~~~~~~~~~~~~p~~vH~n~-~~g~~~K~~~~ 212 (212)
T PF03407_consen 154 EQAAR------------YGGLRVRFLPPSLFPNGHGYFCQSRDWAWVPTKNKPYIVHANC-CDGKEGKRQRF 212 (212)
T ss_pred hcccC------------CcCcEEEEeCHHHeeccccceeecchhhhhccccccceEEEcC-CCChHhHHhhC
Confidence 76421 14799999999999999999999 434333 57999999999 58999999986
No 2
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=98.39 E-value=1.3e-05 Score=82.10 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=101.7
Q ss_pred EEE-cchhhHHHHHHHHHHHHHcCCC-eEEEEE---eCHHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhHHH
Q 036925 131 MTF-GNYAFMDFILNWVQRLTDLGLS-NILVGA---LDTKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKAI 205 (639)
Q Consensus 131 VT~-~N~ay~df~~NWl~sl~r~Gv~-n~lVvA---lD~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~ 205 (639)
||+ +|.+|+.-+...+.|+++.+-+ +++|+. +.++..+.|++.|..+..................+...++.|+.
T Consensus 4 ~t~~~~~~Y~~~a~vl~~SL~~~~~~~~~~vl~~~~is~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~kl~ 83 (240)
T cd02537 4 VTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVEPIDPPDSANLLKRPRFKDTYTKLR 83 (240)
T ss_pred EEEecChhHHHHHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHHcCCEEEecCccCCcchhhhccchHHHHHhHHHH
Confidence 444 5679999999999999998643 344444 35677788888886655543211111110112355667788876
Q ss_pred HHHHHHhcCCc-eEeeecceeEecCCccccccCCCccEEeccCCCCCCccCcchhhhhhcCCcceeeEEEEecChHHHHH
Q 036925 206 LIDSVLPFGFE-LLMCDTDMVWLKNPLPYFARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGIFHWRPTESAKKF 284 (639)
Q Consensus 206 vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~~~~aDv~vSsD~~~~~~~dd~le~w~~~~~~~NtGf~~~R~T~~s~~f 284 (639)
+.. + ..|+ ||+.|+|++.++|.-+.|.. +..+....|.. | ...+|+|+|.++++...
T Consensus 84 ~~~-l--~~~drvlylD~D~~v~~~i~~Lf~~--~~~~~a~~d~~-----------~---~~~fNsGv~l~~~~~~~--- 141 (240)
T cd02537 84 LWN-L--TEYDKVVFLDADTLVLRNIDELFDL--PGEFAAAPDCG-----------W---PDLFNSGVFVLKPSEET--- 141 (240)
T ss_pred hcc-c--cccceEEEEeCCeeEccCHHHHhCC--CCceeeecccC-----------c---cccccceEEEEcCCHHH---
Confidence 554 3 2675 99999999999999888863 22233222321 1 24689999999996543
Q ss_pred HHHHHHHHHcCC--CCCchHHHHHHHHhh
Q 036925 285 AKEWKEMILADD--KIWDQNGFNELIRRQ 311 (639)
Q Consensus 285 ~~~W~~~l~~~~--~~~DQ~afN~ll~~~ 311 (639)
.+...+.+.... ...||.++|.+++..
T Consensus 142 ~~~~~~~~~~~~~~~~~DQdiLN~~~~~~ 170 (240)
T cd02537 142 FNDLLDALQDTPSFDGGDQGLLNSYFSDR 170 (240)
T ss_pred HHHHHHHHhccCCCCCCCHHHHHHHHcCC
Confidence 444455544332 457999999998643
No 3
>PLN00176 galactinol synthase
Probab=98.28 E-value=4.8e-05 Score=81.80 Aligned_cols=179 Identities=15% Similarity=0.214 Sum_probs=109.3
Q ss_pred CCCeEEEE--EcchhhHHHHHHHHHHHHHcCCCe-EEEEEeCH---HHHHHHHhCCCCeEecCCCC-CcCccCCCChHHH
Q 036925 125 QDNIIIMT--FGNYAFMDFILNWVQRLTDLGLSN-ILVGALDT---KLVKALYWKGVPVFDMGSHM-STMDVGWGSPTFH 197 (639)
Q Consensus 125 ~d~tVIVT--~~N~ay~df~~NWl~sl~r~Gv~n-~lVvAlD~---~t~~~c~~~Gvpcf~~~s~~-~~~~~~~Gs~~f~ 197 (639)
..+...|| .+|..|+.=+....+||++.|-++ ++|+..++ +..+.|++.|..+....... ......+. ..+.
T Consensus 20 ~~~~AyVT~L~~n~~Y~~Ga~vL~~SLr~~~s~~~lVvlVt~dVp~e~r~~L~~~g~~V~~V~~i~~~~~~~~~~-~~~~ 98 (333)
T PLN00176 20 PAKRAYVTFLAGNGDYVKGVVGLAKGLRKVKSAYPLVVAVLPDVPEEHRRILVSQGCIVREIEPVYPPENQTQFA-MAYY 98 (333)
T ss_pred cCceEEEEEEecCcchHHHHHHHHHHHHHhCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEecccCCcccccccc-cchh
Confidence 34566777 468899999999999999998654 66666643 66778888887655443211 11111222 2334
Q ss_pred HHHHhHHHHHHHHHhcCCc-eEeeecceeEecCCccccccCCCccEEeccCCCCCCccCc------------c-hhhhhh
Q 036925 198 KMGREKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFARYPDADILTSSDQVVPTVVDD------------R-LDIWQQ 263 (639)
Q Consensus 198 ~m~~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~~~~aDv~vSsD~~~~~~~dd------------~-le~w~~ 263 (639)
.+.+.|.++. .+. .|+ ||+.|+|++-++|--+.|.. ++.-+....|++.+....+ . .-.|..
T Consensus 99 ~i~~tKl~iw-~l~--~ydkvlyLDaD~lv~~nid~Lf~~-~~~~~aAV~dc~~~~~~~~~p~~~~~~c~~~~~~~~wp~ 174 (333)
T PLN00176 99 VINYSKLRIW-EFV--EYSKMIYLDGDIQVFENIDHLFDL-PDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVTWPA 174 (333)
T ss_pred hhhhhhhhhc-ccc--ccceEEEecCCEEeecChHHHhcC-CCcceEEEecccccccccccccccccccccchhhccchh
Confidence 5556677743 333 475 99999999999998888864 3323444555532100000 0 001211
Q ss_pred -----cCCcceeeEEEEecChHHHHHHHHHHHHHHcC--CCCCchHHHHHHHHhh
Q 036925 264 -----VGAAYNVGIFHWRPTESAKKFAKEWKEMILAD--DKIWDQNGFNELIRRQ 311 (639)
Q Consensus 264 -----~~~~~NtGf~~~R~T~~s~~f~~~W~~~l~~~--~~~~DQ~afN~ll~~~ 311 (639)
....+|+|+|.+.++..+. +...+.+... ....||+.+|.+++..
T Consensus 175 ~~g~~~~~yFNSGVlvinps~~~~---~~ll~~l~~~~~~~f~DQD~LN~~F~~~ 226 (333)
T PLN00176 175 ELGPPPPLYFNAGMFVFEPSLSTY---EDLLETLKITPPTPFAEQDFLNMFFRDI 226 (333)
T ss_pred hccCCCCCeEEeEEEEEEcCHHHH---HHHHHHHHhcCCCCCCCHHHHHHHHcCc
Confidence 1237999999999986553 3334444322 2357999999999753
No 4
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=98.16 E-value=6.5e-05 Score=76.81 Aligned_cols=179 Identities=12% Similarity=0.117 Sum_probs=106.3
Q ss_pred EEEEcchhhHHHHHHHHHHHHHcCC-C--eEEEEEeC--HHHHHHHHhC----CCCe--EecCCCCCcCccCCCChHHHH
Q 036925 130 IMTFGNYAFMDFILNWVQRLTDLGL-S--NILVGALD--TKLVKALYWK----GVPV--FDMGSHMSTMDVGWGSPTFHK 198 (639)
Q Consensus 130 IVT~~N~ay~df~~NWl~sl~r~Gv-~--n~lVvAlD--~~t~~~c~~~----Gvpc--f~~~s~~~~~~~~~Gs~~f~~ 198 (639)
||..+|..|+.-+..-+.|+.+..- . ++.|++.| ++..+.+++. +..+ +........ ......+.|..
T Consensus 3 I~~~~d~~y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~i~~~~~~-~~~~~~~~~~~ 81 (248)
T cd04194 3 IVFAIDDNYAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKYNSSIEFIKIDNDDFK-FFPATTDHISY 81 (248)
T ss_pred EEEEecHhhHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEcCHHHHh-cCCcccccccH
Confidence 6888999999999999999987653 2 45666654 5666666554 3322 222211000 01002344555
Q ss_pred HHHhHHHHHHHHHhcCCc-eEeeecceeEecCCcccccc-CCCccEEeccCCCCCCccCcc-hhhhhhcCCcceeeEEEE
Q 036925 199 MGREKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVVPTVVDDR-LDIWQQVGAAYNVGIFHW 275 (639)
Q Consensus 199 m~~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~~~~~dd~-le~w~~~~~~~NtGf~~~ 275 (639)
++..|+.+ -.++. +++ ||+.|+|++.++|.-+.|.. ..+.-+.+..|+......... ..........+|+|+|.+
T Consensus 82 ~~y~rl~l-~~ll~-~~~rvlylD~D~lv~~di~~L~~~~~~~~~~aa~~d~~~~~~~~~~~~~~~~~~~~yfNsGv~l~ 159 (248)
T cd04194 82 ATYYRLLI-PDLLP-DYDKVLYLDADIIVLGDLSELFDIDLGDNLLAAVRDPFIEQEKKRKRRLGGYDDGSYFNSGVLLI 159 (248)
T ss_pred HHHHHHHH-HHHhc-ccCEEEEEeCCEEecCCHHHHhcCCcCCCEEEEEecccHHHHHHHHhhcCCCcccceeeecchhe
Confidence 66666664 45666 786 99999999999999888853 123444555565321000000 000011245799999999
Q ss_pred ecCh-HHHHHHHHHHHHHHcCC---CCCchHHHHHHHHhh
Q 036925 276 RPTE-SAKKFAKEWKEMILADD---KIWDQNGFNELIRRQ 311 (639)
Q Consensus 276 R~T~-~s~~f~~~W~~~l~~~~---~~~DQ~afN~ll~~~ 311 (639)
..+. +...+.+.+.+.+.... ...||.++|.++.+.
T Consensus 160 nl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~~ 199 (248)
T cd04194 160 NLKKWREENITEKLLELIKEYGGRLIYPDQDILNAVLKDK 199 (248)
T ss_pred eHHHHHHhhhHHHHHHHHHhCCCceeeCChHHHHHHHhCC
Confidence 7653 23345555555554433 457999999998653
No 5
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=98.10 E-value=0.00016 Score=74.16 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=100.9
Q ss_pred EEEEEcchhhHHHHHHHHHHHHHcCCC--eEEEEEeC--HHHHHHHHhC----CCCeEecCCCCCc-CccCCCChHHHHH
Q 036925 129 IIMTFGNYAFMDFILNWVQRLTDLGLS--NILVGALD--TKLVKALYWK----GVPVFDMGSHMST-MDVGWGSPTFHKM 199 (639)
Q Consensus 129 VIVT~~N~ay~df~~NWl~sl~r~Gv~--n~lVvAlD--~~t~~~c~~~----Gvpcf~~~s~~~~-~~~~~Gs~~f~~m 199 (639)
++++.+|..|+.-+.--+.|+.+..-+ ++.|+..| ++..+.+... +..+-..+..... .......+.+...
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 82 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHVLTNPLSDTFKAALDNLRKLYNFNYELIPVDILDSVDSEHLKRPIKIV 82 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCCCeEEEEEEccccHHHHHHHHHHHhccCceEEEEeccccCcchhhhhcCccccc
Confidence 455566679999999999999877542 45555443 3444445432 2221111111111 0111111334455
Q ss_pred HHhHHHHHHHHHhcCCc-eEeeecceeEecCCccccccC-CCccEEeccCCCCCCccCcch---hhhhhcCCcceeeEEE
Q 036925 200 GREKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFARY-PDADILTSSDQVVPTVVDDRL---DIWQQVGAAYNVGIFH 274 (639)
Q Consensus 200 ~~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~~-~~aDv~vSsD~~~~~~~dd~l---e~w~~~~~~~NtGf~~ 274 (639)
+..|+. +-.++. .++ ||+.|+|++.++|.-+.|... .+.-+.+..|+..... .... ..+......+|+|+|.
T Consensus 83 ~y~RL~-i~~llp-~~~kvlYLD~D~iv~~di~~L~~~~l~~~~~aav~d~~~~~~-~~~~~~~~~~~~~~~yfNsGVml 159 (246)
T cd00505 83 TLTKLH-LPNLVP-DYDKILYVDADILVLTDIDELWDTPLGGQELAAAPDPGDRRE-GKYYRQKRSHLAGPDYFNSGVFV 159 (246)
T ss_pred eeHHHH-HHHHhh-ccCeEEEEcCCeeeccCHHHHhhccCCCCeEEEccCchhhhc-cchhhcccCCCCCCCceeeeeEE
Confidence 566665 556777 786 999999999999988888532 3344444455431000 0000 0011123479999999
Q ss_pred EecChH-HHHHHHHHHHHHHc---CCCCCchHHHHHHHHh
Q 036925 275 WRPTES-AKKFAKEWKEMILA---DDKIWDQNGFNELIRR 310 (639)
Q Consensus 275 ~R~T~~-s~~f~~~W~~~l~~---~~~~~DQ~afN~ll~~ 310 (639)
+..+.- -..+++...+.... .....||+++|.++.+
T Consensus 160 inl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~~~~ 199 (246)
T cd00505 160 VNLSKERRNQLLKVALEKWLQSLSSLSGGDQDLLNTFFKQ 199 (246)
T ss_pred EechHHHHHHHHHHHHHHHHhhcccCccCCcHHHHHHHhc
Confidence 988765 24444444443322 2356899999999965
No 6
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=97.95 E-value=6.2e-05 Score=75.44 Aligned_cols=177 Identities=13% Similarity=0.081 Sum_probs=99.8
Q ss_pred EEEEcchhhHHHHHHHHHHHHHcCC--CeE-EEEEe---CHHHHHHHHhCCCCe-----EecCCC-CC--cCccCCCChH
Q 036925 130 IMTFGNYAFMDFILNWVQRLTDLGL--SNI-LVGAL---DTKLVKALYWKGVPV-----FDMGSH-MS--TMDVGWGSPT 195 (639)
Q Consensus 130 IVT~~N~ay~df~~NWl~sl~r~Gv--~n~-lVvAl---D~~t~~~c~~~Gvpc-----f~~~s~-~~--~~~~~~Gs~~ 195 (639)
|+..+|..|+.-+..-+.|+.+..- .++ +.+.. .++..+.+++.+... +..... .. ..........
T Consensus 2 i~~~~d~~y~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (250)
T PF01501_consen 2 IVLACDDNYLEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRH 81 (250)
T ss_dssp EEEECSGGGHHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTC
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhccccccc
Confidence 7889999999999999999999875 343 22222 345566665544321 111110 00 0011122344
Q ss_pred HHHHHHhHHHHHHHHHhcCCc-eEeeecceeEecCCccccccC-CCccEEeccCCC-----CCCccCcchhhhhhcCCcc
Q 036925 196 FHKMGREKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFARY-PDADILTSSDQV-----VPTVVDDRLDIWQQVGAAY 268 (639)
Q Consensus 196 f~~m~~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~~-~~aDv~vSsD~~-----~~~~~dd~le~w~~~~~~~ 268 (639)
+..++..|..+- ++| ..|+ ||+.|+|++.++|.-+.|... .+.-+.+..|.. ...... ...........+
T Consensus 82 ~~~~~~~rl~i~-~ll-~~~drilyLD~D~lv~~dl~~lf~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~f 158 (250)
T PF01501_consen 82 FSPATFARLFIP-DLL-PDYDRILYLDADTLVLGDLDELFDLDLQGKYLAAVEDESFDNFPNKRFPF-SERKQPGNKPYF 158 (250)
T ss_dssp GGGGGGGGGGHH-HHS-TTSSEEEEE-TTEEESS-SHHHHC---TTSSEEEEE----HHHHTSTTSS-EEECESTTTTSE
T ss_pred ccHHHHHHhhhH-HHH-hhcCeEEEEcCCeeeecChhhhhcccchhhhccccccchhhhhhhcccch-hhcccCcccccc
Confidence 566677787644 454 6776 999999999999998888632 222333333410 000000 000001124689
Q ss_pred eeeEEEEecChHHH-HHHHHHHHHHHcCC---CCCchHHHHHHHH
Q 036925 269 NVGIFHWRPTESAK-KFAKEWKEMILADD---KIWDQNGFNELIR 309 (639)
Q Consensus 269 NtGf~~~R~T~~s~-~f~~~W~~~l~~~~---~~~DQ~afN~ll~ 309 (639)
|+|+|.+..+.-.. .+.+.+...+.... ...||.++|.++.
T Consensus 159 NsGv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DQ~~ln~~~~ 203 (250)
T PF01501_consen 159 NSGVMLFNPSKWRKENILQKLIEWLEQNGMKLGFPDQDILNIVFY 203 (250)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHHHTTTT-SSCHHHHHHHHHT
T ss_pred cCcEEEEeechhhhhhhhhhhhhhhhhcccccCcCchHHHhhhcc
Confidence 99999998876544 34455555544333 3689999999985
No 7
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family. N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
Probab=97.65 E-value=0.00095 Score=70.29 Aligned_cols=153 Identities=16% Similarity=0.170 Sum_probs=91.9
Q ss_pred cchhhHHHHHHHHHHHHHcCCCe-EEEEEeCH---HHHHH-------HHhCCCCeEecCCCCCcCccCCCChHHHHHHHh
Q 036925 134 GNYAFMDFILNWVQRLTDLGLSN-ILVGALDT---KLVKA-------LYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGRE 202 (639)
Q Consensus 134 ~N~ay~df~~NWl~sl~r~Gv~n-~lVvAlD~---~t~~~-------c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~ 202 (639)
+|.+|+.-++--.++|++.|-++ ++|+..+. ...+. +.+-|+.+...+...... +++.|.. ++.
T Consensus 8 Tn~~YL~gAlvL~~sLr~~gs~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~~~----~~~~~~~-~~t 82 (278)
T cd06914 8 TNADYLCNALILFEQLRRLGSKAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIASG----GDAYWAK-SLT 82 (278)
T ss_pred cChhHHHHHHHHHHHHHHhCCCCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccCCC----CCccHHH-HHH
Confidence 48999999999999999999744 44444322 22111 122344443333221111 3344443 366
Q ss_pred HHHHHHHHHhcCCc-eEeeecceeEecCCccccccCCCccEEeccCCCCCCccCcchhhhhhcCCcceeeEEEEecChHH
Q 036925 203 KAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGIFHWRPTESA 281 (639)
Q Consensus 203 K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~~~~aDv~vSsD~~~~~~~dd~le~w~~~~~~~NtGf~~~R~T~~s 281 (639)
|+.+... ..|+ ||+.|+|++-++|--+.|.. +...-+..-+. +..+|+|+|.+.++...
T Consensus 83 Kl~~~~l---~~y~kvlyLDaD~l~~~~ideLf~~-~~~~~~Aap~~----------------~~~FNSGvmvi~ps~~~ 142 (278)
T cd06914 83 KLRAFNQ---TEYDRIIYFDSDSIIRHPMDELFFL-PNYIKFAAPRA----------------YWKFASHLMVIKPSKEA 142 (278)
T ss_pred HHHhccc---cceeeEEEecCChhhhcChHHHhcC-CcccceeeecC----------------cceecceeEEEeCCHHH
Confidence 7665543 3576 99999999999998777753 21111111110 12699999999998755
Q ss_pred -HHHHHHHHHHHHcCCCCCchHHHHHHHHhh
Q 036925 282 -KKFAKEWKEMILADDKIWDQNGFNELIRRQ 311 (639)
Q Consensus 282 -~~f~~~W~~~l~~~~~~~DQ~afN~ll~~~ 311 (639)
.++++...+......+..||+++|.++.+.
T Consensus 143 ~~~l~~~~~~~~~~~~~~~DQdiLN~~~~~~ 173 (278)
T cd06914 143 FKELMTEILPAYLNKKNEYDMDLINEEFYNS 173 (278)
T ss_pred HHHHHHHHHHhcccCCCCCChHHHHHHHhCC
Confidence 333333333332233578999999999754
No 8
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=97.37 E-value=0.00022 Score=73.53 Aligned_cols=207 Identities=15% Similarity=0.139 Sum_probs=31.8
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeCHHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhHHH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALDTKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKAI 205 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~ 205 (639)
.+.||||..|..=-+ +..|-.+++..++. .=.++|+..|+-++...... +-. .-...+|.|+.
T Consensus 3 ~~vvivt~~d~~~~~---------~~~~~~~~~~~~~~-Nr~~Ya~~HgY~~~~~~~~~------~~~-~~~~~~W~K~~ 65 (239)
T PF05637_consen 3 PKVVIVTASDFESCD---------KPSGDWSYLKKSIQ-NRVDYARRHGYDLYYRNIQE------YDD-PERPGSWAKIP 65 (239)
T ss_dssp ----------------------------------------HHHHHHHHT-EEEEE-S--------S---SHHHHHHTHHH
T ss_pred ccccccccccccccc---------cccccccccchhHH-HHHHHHHhcCCEEEEEChHH------cCC-CCCChhhHHHH
Confidence 367788887754221 22232223333332 23566778888776632210 000 12234599999
Q ss_pred HHHHHHhcC--C-ceEeeecceeEecCCcc---ccccCCCccEE-------eccCCCCCC----ccCcchhhhhhcCCcc
Q 036925 206 LIDSVLPFG--F-ELLMCDTDMVWLKNPLP---YFARYPDADIL-------TSSDQVVPT----VVDDRLDIWQQVGAAY 268 (639)
Q Consensus 206 vl~~lL~~G--y-~VL~sDvDVVWlrDPlp---yf~~~~~aDv~-------vSsD~~~~~----~~dd~le~w~~~~~~~ 268 (639)
+|++.+..= + =|++.|.|++.+.-=++ ++.+...-|-. +.-+....+ ..++..-.-.+....+
T Consensus 66 ~lr~~m~~~P~~~wv~~lD~Dali~n~~~~L~~~il~p~~L~~~~~r~~~~~p~~~~~~~~~~~~~~~~~li~t~d~~gL 145 (239)
T PF05637_consen 66 ALRAAMKKYPEAEWVWWLDSDALIMNPDFSLEEHILSPSRLDSLLLRDVPIVPPDSIIKTYSVIDGNDIHLIITQDWNGL 145 (239)
T ss_dssp HHHHHHHH-TT-SEEEEE-TTEEE--------------------------------------------------------
T ss_pred HHHHHHHhCCCCCEEEEEcCCeEEEecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999642 2 39999999877642222 22110000000 000110000 0000000001123569
Q ss_pred eeeEEEEecChHHHHHHHHHHHHHHcCC-----CCCchHHHHHHHHhhcCCCCCCCccceeeccCceEEEeccccccCCC
Q 036925 269 NVGIFHWRPTESAKKFAKEWKEMILADD-----KIWDQNGFNELIRRQLGPSVSEDSELVYAYDGNLKLGVLPASIFCSG 343 (639)
Q Consensus 269 NtGf~~~R~T~~s~~f~~~W~~~l~~~~-----~~~DQ~afN~ll~~~~~~~~~~~~~l~~a~~~~l~v~~Lp~~~F~nG 343 (639)
|+|+|++|.++-++.|++.|.+.+.... ...||.||-.+++.+... .-++.++|...|-+.
T Consensus 146 NtGsFliRns~ws~~fLd~w~~~~~~~~~~~~~~~~EQsAl~~ll~~~~~~--------------~~~~~~vpq~~~nsy 211 (239)
T PF05637_consen 146 NTGSFLIRNSPWSRDFLDAWADPLYRNYDWDQLEFDEQSALEHLLQWHPEI--------------LSKVALVPQRWFNSY 211 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc--------------ccccccccccccccc
Confidence 9999999999999999999998654332 246999999999764311 235668888777332
Q ss_pred cchhhhhhhhcCCcceEEEEecc
Q 036925 344 HTYFVQAMYKQLRLEPYAVHTTF 366 (639)
Q Consensus 344 h~yF~q~l~~~~~~~pyvVHan~ 366 (639)
. .-... ..-....++||..-
T Consensus 212 ~-~~~~~--~~~~~GDfvvhfaG 231 (239)
T PF05637_consen 212 P-EDECN--YQYKEGDFVVHFAG 231 (239)
T ss_dssp -----------------------
T ss_pred c-ccccc--cccccccccccccc
Confidence 1 11111 12234578999873
No 9
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=97.13 E-value=0.014 Score=61.52 Aligned_cols=180 Identities=16% Similarity=0.298 Sum_probs=90.3
Q ss_pred EEEEEcchhhHHHHHHHHHHHHHcCCC--eEEEEEe--CHHHHHHHHhC----CCCeEecCCCCCcCccCC-CChHHHHH
Q 036925 129 IIMTFGNYAFMDFILNWVQRLTDLGLS--NILVGAL--DTKLVKALYWK----GVPVFDMGSHMSTMDVGW-GSPTFHKM 199 (639)
Q Consensus 129 VIVT~~N~ay~df~~NWl~sl~r~Gv~--n~lVvAl--D~~t~~~c~~~----Gvpcf~~~s~~~~~~~~~-Gs~~f~~m 199 (639)
+||+.+ .+|.+.+.+.+.|+-...-. ++-|+.- .++..+.+.+. +................+ .+..|...
T Consensus 4 ~iv~~~-~~y~~~~~~~i~Sil~n~~~~~~fhii~d~~s~~~~~~l~~~~~~~~~~i~f~~i~~~~~~~~~~~~~~~s~~ 82 (280)
T cd06431 4 AIVCAG-YNASRDVVTLVKSVLFYRRNPLHFHLITDEIARRILATLFQTWMVPAVEVSFYNAEELKSRVSWIPNKHYSGI 82 (280)
T ss_pred EEEEcc-CCcHHHHHHHHHHHHHcCCCCEEEEEEECCcCHHHHHHHHHhccccCcEEEEEEhHHhhhhhccCcccchhhH
Confidence 566777 99999999999998655322 3444443 23444555432 222211111000011111 11223222
Q ss_pred -HHhHHHHHHHHHhcCCc-eEeeecceeEecCCcccccc---CCCccEEeccCCCC----CCccCcchhhhhhcCCccee
Q 036925 200 -GREKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFAR---YPDADILTSSDQVV----PTVVDDRLDIWQQVGAAYNV 270 (639)
Q Consensus 200 -~~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~---~~~aDv~vSsD~~~----~~~~dd~le~w~~~~~~~Nt 270 (639)
+..|+ ++-++|..-++ ||+.|+|+|...|..+.+.. ..+.-++...+... ..... .-..|...+..+|+
T Consensus 83 y~y~RL-~ip~llp~~~dkvLYLD~Diiv~~di~eL~~~~~~~~~~~~~a~v~~~~~~~~~~~~~-~~~~~~~~~~yFNs 160 (280)
T cd06431 83 YGLMKL-VLTEALPSDLEKVIVLDTDITFATDIAELWKIFHKFTGQQVLGLVENQSDWYLGNLWK-NHRPWPALGRGFNT 160 (280)
T ss_pred HHHHHH-HHHHhchhhcCEEEEEcCCEEEcCCHHHHHHHhhhcCCCcEEEEeccchhhhhhhhhh-ccCCCcccccceee
Confidence 23454 35567765565 99999999999999887743 11222322222110 00000 00011112347999
Q ss_pred eEEEEecCh-HHHHHHHHHHHHHH------cCCCCCchHHHHHHHHhh
Q 036925 271 GIFHWRPTE-SAKKFAKEWKEMIL------ADDKIWDQNGFNELIRRQ 311 (639)
Q Consensus 271 Gf~~~R~T~-~s~~f~~~W~~~l~------~~~~~~DQ~afN~ll~~~ 311 (639)
|+|++--.. +-..+.+.|..... ......||+++|.++.+.
T Consensus 161 GVmlinL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~DQDiLN~v~~~~ 208 (280)
T cd06431 161 GVILLDLDKLRKMKWESMWRLTAERELMSMLSTSLADQDIFNAVIKQN 208 (280)
T ss_pred eeeeeeHHHHHhhCHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHcCC
Confidence 999884421 11223344433221 123568999999999654
No 10
>PLN03181 glycosyltransferase; Provisional
Probab=97.09 E-value=0.0051 Score=67.36 Aligned_cols=149 Identities=19% Similarity=0.237 Sum_probs=88.8
Q ss_pred cCCCeEEEEEcc-----hhh-----HHHHHHHHHHHHHcCCCeEEEEEeCHHHHHHHHhCCCCeEecCCCCCcCccCCCC
Q 036925 124 VQDNIIIMTFGN-----YAF-----MDFILNWVQRLTDLGLSNILVGALDTKLVKALYWKGVPVFDMGSHMSTMDVGWGS 193 (639)
Q Consensus 124 A~d~tVIVT~~N-----~ay-----~df~~NWl~sl~r~Gv~n~lVvAlD~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs 193 (639)
++.+.||||..+ ..+ ..+++|=+.-.+++|+..++.-+. .. ..
T Consensus 126 ~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~---------------------Ld---~~--- 178 (453)
T PLN03181 126 AEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNAL---------------------LH---PK--- 178 (453)
T ss_pred CCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccc---------------------cC---cc---
Confidence 567999999977 223 344455555567777665433220 00 00
Q ss_pred hHHHHHHHhHHHHHHHHHhcC--Cc-eEeeecceeEecCCccc--cccCCCccEEeccCCCCCCccCcchhhhhhcCCcc
Q 036925 194 PTFHKMGREKAILIDSVLPFG--FE-LLMCDTDMVWLKNPLPY--FARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAY 268 (639)
Q Consensus 194 ~~f~~m~~~K~~vl~~lL~~G--y~-VL~sDvDVVWlrDPlpy--f~~~~~aDv~vSsD~~~~~~~dd~le~w~~~~~~~ 268 (639)
....|.|+-+|+.++..- .+ +++.|.|++.+ ||--- +.++.+..+++- ++ +..... .+.-..+
T Consensus 179 ---~p~~WaKipalRaAM~a~PeAEWfWWLDsDALIM-Np~~sLPl~ry~~~NLvvh--g~-p~~vy~-----~qdw~Gl 246 (453)
T PLN03181 179 ---MNSYWAKLPVVRAAMLAHPEAEWIWWVDSDAVFT-DMDFKLPLHRYRDHNLVVH--GW-PKLIYE-----KRSWTAL 246 (453)
T ss_pred ---CchhhhHHHHHHHHHHHCCCceEEEEecCCceee-cCCCCCCHhhcCCcccccc--CC-cccccc-----ccccccc
Confidence 123588999999877653 33 99999999776 55211 223444443321 11 000000 0112569
Q ss_pred eeeEEEEecChHHHHHHHHHHHHHHc-------------------CCCCCchHHHHHHHHhh
Q 036925 269 NVGIFHWRPTESAKKFAKEWKEMILA-------------------DDKIWDQNGFNELIRRQ 311 (639)
Q Consensus 269 NtGf~~~R~T~~s~~f~~~W~~~l~~-------------------~~~~~DQ~afN~ll~~~ 311 (639)
|+|.|++|+++=+..|++.|..+--. .....||.|+--+|-.+
T Consensus 247 N~GsFLIRNcqWSl~LLDaWa~Mgp~~p~~~~~G~~l~~~l~~r~~~eaDDQsaLvyll~~~ 308 (453)
T PLN03181 247 NAGVFLIRNCQWSLDFMDAWASMGPASPEYAKWGKILRSTFKDKLFPESDDQSALVYLLYKH 308 (453)
T ss_pred ceeeeEEecCHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhCCCCCCCccchHHHHHHHHhc
Confidence 99999999999999999999984110 12356888887777554
No 11
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=96.87 E-value=0.044 Score=58.58 Aligned_cols=228 Identities=14% Similarity=0.175 Sum_probs=113.8
Q ss_pred EEEEEcchhhHHHHHHHHHHHHHcCCC--eEEEEEeC---HHHHHHHHhC---CCCeEecC---CCCCcC-ccCCCChHH
Q 036925 129 IIMTFGNYAFMDFILNWVQRLTDLGLS--NILVGALD---TKLVKALYWK---GVPVFDMG---SHMSTM-DVGWGSPTF 196 (639)
Q Consensus 129 VIVT~~N~ay~df~~NWl~sl~r~Gv~--n~lVvAlD---~~t~~~c~~~---Gvpcf~~~---s~~~~~-~~~~Gs~~f 196 (639)
+||+..|. .+-+++-+.|+-...-. ++-|++-| ++..+.+++. +...+... ...+.. ...| ++.|
T Consensus 4 ~vv~~g~~--~~~~~~~lkSil~~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~w-s~l~ 80 (304)
T cd06430 4 AVVACGER--LEETLTMLKSAIVFSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEW-KKLF 80 (304)
T ss_pred EEEEcCCc--HHHHHHHHHHHHHhCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhh-hhcc
Confidence 34555555 57788888888554422 46777766 2333334332 11111111 112221 1233 2333
Q ss_pred HHHHHhHHHHHHHHHhcCC-ceEeeecceeEecCCcccccc---CCCccEEecc-CCCCCC-ccCcchh--hhhhcCCcc
Q 036925 197 HKMGREKAILIDSVLPFGF-ELLMCDTDMVWLKNPLPYFAR---YPDADILTSS-DQVVPT-VVDDRLD--IWQQVGAAY 268 (639)
Q Consensus 197 ~~m~~~K~~vl~~lL~~Gy-~VL~sDvDVVWlrDPlpyf~~---~~~aDv~vSs-D~~~~~-~~dd~le--~w~~~~~~~ 268 (639)
...+..|+. +-++|. -+ .||+.|+||+.++|-.+.+.. ..+.-+.... |..... .-..... .+. ....+
T Consensus 81 ~~~~y~RL~-ip~lLp-~~dkvLYLD~Dii~~~dI~eL~~~~~df~~~~~aA~v~e~~~~~~~~~~~~~~~~~~-~~~gF 157 (304)
T cd06430 81 KPCAAQRLF-LPSLLP-DVDSLLYVDTDILFLRPVEEIWSFLKKFNSTQLAAMAPEHEEPNIGWYNRFARHPYY-GKTGV 157 (304)
T ss_pred cHHHHHHHH-HHHHhh-hhceEEEeccceeecCCHHHHHHHHhhcCCCeEEEEEecccccchhhhhhhcccCcc-ccccc
Confidence 334444444 455666 45 499999999999998776642 1221122221 211000 0000000 000 01249
Q ss_pred eeeEEEEecCh-H-----------HHHHHHHHHHHHHcCC---CCCchHHHHHHHHhhcCCCCCCCccceeeccCceEEE
Q 036925 269 NVGIFHWRPTE-S-----------AKKFAKEWKEMILADD---KIWDQNGFNELIRRQLGPSVSEDSELVYAYDGNLKLG 333 (639)
Q Consensus 269 NtGf~~~R~T~-~-----------s~~f~~~W~~~l~~~~---~~~DQ~afN~ll~~~~~~~~~~~~~l~~a~~~~l~v~ 333 (639)
|+|+|++-=+. + ...+.+.|.+.+.+.. ...||++||.++.+.. -++.
T Consensus 158 NSGVmLmNL~~wR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~DQDiLN~v~~~~p-----------------~~~~ 220 (304)
T cd06430 158 NSGVMLMNLTRMRRKYFKNDMTPVGLRWEEILMPLYKKYKLKITWGDQDLINIIFHHNP-----------------EMLY 220 (304)
T ss_pred ccceeeeeHHHHHhhhcccccchhhhhHHHHHHHHHHhcccCCCCCCHHHHHHHHcCCC-----------------CeEE
Confidence 99999985433 1 1334556666665443 3579999999996431 2456
Q ss_pred ecccc-ccCCCcchhhhhhhhcCCcceEEEEecccCCCchhHHHHHHH
Q 036925 334 VLPAS-IFCSGHTYFVQAMYKQLRLEPYAVHTTFQYAGTEGKRHRLRE 380 (639)
Q Consensus 334 ~Lp~~-~F~nGh~yF~q~l~~~~~~~pyvVHan~~~~G~~~Kr~RLRe 380 (639)
.||.. -|...|+.|...-..+...++-++|.|=+.. ...|..-+|.
T Consensus 221 ~Lp~~wN~~~d~~~y~~~~~~~~~~~~~~~H~n~~~~-~~~~~~~f~~ 267 (304)
T cd06430 221 VFPCHWNYRPDHCMYGSNCKAAEEEGVFILHGNRGVY-HSDKQPAFRA 267 (304)
T ss_pred EcCccccCCccceeecccccccccccceEEEcCCCCC-CCccchHHHH
Confidence 67753 2333444332221112335799999996423 3445444554
No 12
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=96.77 E-value=0.02 Score=61.90 Aligned_cols=179 Identities=10% Similarity=0.002 Sum_probs=93.1
Q ss_pred eEEEEEcchhhHHHHHHHHHHHHHcCCC---eEEEEE--eCHHHHHHHHhC----CCCe--EecCCCCCcCccCCCChHH
Q 036925 128 IIIMTFGNYAFMDFILNWVQRLTDLGLS---NILVGA--LDTKLVKALYWK----GVPV--FDMGSHMSTMDVGWGSPTF 196 (639)
Q Consensus 128 tVIVT~~N~ay~df~~NWl~sl~r~Gv~---n~lVvA--lD~~t~~~c~~~----Gvpc--f~~~s~~~~~~~~~Gs~~f 196 (639)
.=||..+|.+|+.-+.--+.|+-...-+ ++-|+. ++++..+.+.+. +..+ +........ +. -.+..+
T Consensus 26 i~Iv~~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~~~i~~~~id~~~~~-~~-~~~~~~ 103 (334)
T PRK15171 26 LDIAYGIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYNTRINIYLINCERLK-SL-PSTKNW 103 (334)
T ss_pred eeEEEECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEEeCHHHHh-CC-cccCcC
Confidence 4488889999999999999998654322 344444 344554544332 3322 222211000 00 012234
Q ss_pred HHHHHhHHHHHHHHHhcCCc-eEeeecceeEecCCcccccc-CCCccEEec-cCCCCCCccCcchhh--hhh-cCCccee
Q 036925 197 HKMGREKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFAR-YPDADILTS-SDQVVPTVVDDRLDI--WQQ-VGAAYNV 270 (639)
Q Consensus 197 ~~m~~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~-~~~aDv~vS-sD~~~~~~~dd~le~--w~~-~~~~~Nt 270 (639)
...+..|+. +-++|...++ ||+.|+|+|-.+|-.+.+.. ..+.-+... .|+...- ....... ... ....+|+
T Consensus 104 s~atY~Rl~-ip~llp~~~dkvLYLD~Diiv~~dl~~L~~~dl~~~~~aav~~d~~~~~-~~~~~~~l~~~~~~~~YFNs 181 (334)
T PRK15171 104 TYATYFRFI-IADYFIDKTDKVLYLDADIACKGSIKELIDLDFAENEIAAVVAEGDAEW-WSKRAQSLQTPGLASGYFNS 181 (334)
T ss_pred CHHHHHHHH-HHHhhhhhcCEEEEeeCCEEecCCHHHHHhccCCCCeEEEEEeccchhH-HHHHHHhcCCccccccceec
Confidence 455556654 4456655675 99999999999998887753 111112222 2321000 0000000 000 1236999
Q ss_pred eEEEEecCh-HHHHHHHHHHHHHHcC-----CCCCchHHHHHHHHh
Q 036925 271 GIFHWRPTE-SAKKFAKEWKEMILAD-----DKIWDQNGFNELIRR 310 (639)
Q Consensus 271 Gf~~~R~T~-~s~~f~~~W~~~l~~~-----~~~~DQ~afN~ll~~ 310 (639)
|+|++--.. +-..+.+++.+.+... -...||++||.++.+
T Consensus 182 GVlliNl~~wRe~~i~~k~~~~l~~~~~~~~~~~~DQDiLN~~~~~ 227 (334)
T PRK15171 182 GFLLINIPAWAQENISAKAIEMLADPEIVSRITHLDQDVLNILLAG 227 (334)
T ss_pred ceEEEcHHHHHHhhHHHHHHHHHhccccccceeecChhHHHHHHcC
Confidence 999985422 2222334444444322 134699999999964
No 13
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=96.34 E-value=0.027 Score=61.72 Aligned_cols=103 Identities=18% Similarity=0.198 Sum_probs=68.5
Q ss_pred HhHHHHHHHHHhcC--Cc-eEeeecceeEecCCcc-ccccCCCccEEeccCCCCCCccCcchhhhhhcCCcceeeEEEEe
Q 036925 201 REKAILIDSVLPFG--FE-LLMCDTDMVWLKNPLP-YFARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGIFHWR 276 (639)
Q Consensus 201 ~~K~~vl~~lL~~G--y~-VL~sDvDVVWlrDPlp-yf~~~~~aDv~vSsD~~~~~~~dd~le~w~~~~~~~NtGf~~~R 276 (639)
|.|+.+|+.++... .+ +++.|.|++.+.-.+. =+.+|.+.++++- ++...+-. .+.-..+|+|+|++|
T Consensus 182 WaKlpaLR~aM~~~PeaEWiWWLDsDALImNmsfelPlery~~~NlVih--g~~~~l~~------~kdW~GLNtGsFLIR 253 (429)
T PLN03182 182 WAKLPLLRKLMLAHPEVEWIWWMDSDALFTDMTFEIPLEKYEGYNLVIH--GWDELVYD------QKSWIGLNTGSFLIR 253 (429)
T ss_pred hhHHHHHHHHHHHCCCceEEEEecCCceeecCCCCCCHhHcCCcCeeec--cchhhhee------ccccCccceeeEEEE
Confidence 89999999998764 33 8999999998753322 1334455554432 11100000 001246899999999
Q ss_pred cChHHHHHHHHHHHHHH-----------------c--CCCCCchHHHHHHHHhh
Q 036925 277 PTESAKKFAKEWKEMIL-----------------A--DDKIWDQNGFNELIRRQ 311 (639)
Q Consensus 277 ~T~~s~~f~~~W~~~l~-----------------~--~~~~~DQ~afN~ll~~~ 311 (639)
.++=++.|++.|..+-- . .....||.|+--+|..+
T Consensus 254 NcqWSldlLDaWa~mgp~~~~~~~~g~~l~~~l~~rp~~eaDDQSAlvyLl~~~ 307 (429)
T PLN03182 254 NCQWSLDLLDAWAPMGPKGPIRDEAGKILTAELKGRPAFEADDQSALVYLLLTQ 307 (429)
T ss_pred cCHHHHHHHHHHHhcCCCCchhhhHHHHHHHhhcCCCCCCcccHHHHHHHHHhc
Confidence 99999999999987521 1 12367999999999765
No 14
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=96.27 E-value=0.074 Score=57.37 Aligned_cols=182 Identities=15% Similarity=0.087 Sum_probs=101.8
Q ss_pred EEEEcchhhHHHHHHHHHHHHHcC----CC-eEEEEEeCHHHHHHHHhC----CCCeEecCCCCC-cCccCCCChHHHHH
Q 036925 130 IMTFGNYAFMDFILNWVQRLTDLG----LS-NILVGALDTKLVKALYWK----GVPVFDMGSHMS-TMDVGWGSPTFHKM 199 (639)
Q Consensus 130 IVT~~N~ay~df~~NWl~sl~r~G----v~-n~lVvAlD~~t~~~c~~~----Gvpcf~~~s~~~-~~~~~~Gs~~f~~m 199 (639)
||-.+|.+|+.=+...+.|+-... ++ ++++.-++++-.+.+++. +........... -.+..--++.|..|
T Consensus 5 Iv~a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~~i~~~~id~~~~~~~~~~~~~~s~~ 84 (325)
T COG1442 5 IAFAFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKSFIVLEVIDIEPFLDYPPFTKRFSKM 84 (325)
T ss_pred EEEEcccccchhHHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhccceeeEEEechhhhcccccccchHHH
Confidence 677889999988888888874442 22 567777788888777654 222111111110 01111135778888
Q ss_pred HHhHHHHHHHHHhcCCceEeeecceeEecCCcccccc-CCCccEEeccCCCCCCccC--cchhhhhhcCCcceeeEEEEe
Q 036925 200 GREKAILIDSVLPFGFELLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVVPTVVD--DRLDIWQQVGAAYNVGIFHWR 276 (639)
Q Consensus 200 ~~~K~~vl~~lL~~Gy~VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~~~~~d--d~le~w~~~~~~~NtGf~~~R 276 (639)
+..|.- +-++....=.+|++|+|||..+|=-+.|.. ..+.-+.+..|........ ...+.-...+..+|+|++++-
T Consensus 85 v~~R~f-iadlf~~~dK~lylD~Dvi~~g~l~~lf~~~~~~~~~aaV~D~~~~~~~~~~~~~~~~~~~~~yFNaG~llin 163 (325)
T COG1442 85 VLVRYF-LADLFPQYDKMLYLDVDVIFCGDLSELFFIDLEEYYLAAVRDVFSHYMKEGALRLEKGDLEGSYFNAGVLLIN 163 (325)
T ss_pred HHHHHH-HHHhccccCeEEEEecCEEEcCcHHHHHhcCCCcceEEEEeehhhhhhhhhhhHhhhcccccccCccceeeeh
Confidence 888876 556777775599999999999997666542 2233333334432210000 000001113567999999873
Q ss_pred cC-hHHHHHHHHHHHHHHcC---CCCCchHHHHHHHHhhc
Q 036925 277 PT-ESAKKFAKEWKEMILAD---DKIWDQNGFNELIRRQL 312 (639)
Q Consensus 277 ~T-~~s~~f~~~W~~~l~~~---~~~~DQ~afN~ll~~~~ 312 (639)
-- =+-..+.+...+.+... -...||+++|.+++...
T Consensus 164 l~~W~~~~i~~k~i~~~~~~~~~~~~~DQdiLN~i~~~~~ 203 (325)
T COG1442 164 LKLWREENIFEKLIELLKDKENDLLYPDQDILNMIFEDRV 203 (325)
T ss_pred HHHHHHhhhHHHHHHHHhccccccCCccccHHHHHHHhhh
Confidence 21 11111222222222111 23469999999997654
No 15
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=95.66 E-value=0.0076 Score=64.64 Aligned_cols=56 Identities=29% Similarity=0.460 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCeeecCCcceeccccccCCCCccCCcccccCccCCCCcccchhhhhhc
Q 036925 423 VNYQMKQIRTALAIASVLNRTLVMPPLWCRLDRLWFPHPGVLEGTMTRQPFLCPLDHVFEVNVMLQQ 489 (639)
Q Consensus 423 ~~~ql~q~r~alAlA~~l~RtLVlP~~~C~cd~~W~~~~~~~~g~~~~~Pf~CPlDhv~~~~~~~~~ 489 (639)
.|.|+.++++|+++|++|||||||||+.=. ..|.... ....+ |.+.+|+++.|.+.
T Consensus 10 fnNQr~~~~~a~~~A~~LnRTLVLPp~~~~--~~~~~~~-----~~~~i----pf~~~fD~~~l~~~ 65 (351)
T PF10250_consen 10 FNNQRMGFENAVVFAKALNRTLVLPPFIKH--YHWKDQS-----KQRHI----PFSDFFDVEHLRKF 65 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHT-EEE--EEEEE--SSSS---------EEEE----EHHHHB-HHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEcCCcccc--ccccccc-----ccccc----ChhhhccHHHHHHH
Confidence 567999999999999999999999998322 4453321 11233 55679999998764
No 16
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=95.53 E-value=0.47 Score=49.21 Aligned_cols=213 Identities=10% Similarity=0.043 Sum_probs=102.6
Q ss_pred EEEEEcchhhHHHHHHHHHHHHHcCCC--eEEEEE--eCHHHHHHHHh----CCCCeEecCCCCCcCccCCCChHHHHHH
Q 036925 129 IIMTFGNYAFMDFILNWVQRLTDLGLS--NILVGA--LDTKLVKALYW----KGVPVFDMGSHMSTMDVGWGSPTFHKMG 200 (639)
Q Consensus 129 VIVT~~N~ay~df~~NWl~sl~r~Gv~--n~lVvA--lD~~t~~~c~~----~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~ 200 (639)
|+++.++..|...+...+.|+-...-. ++-|+. +.++-.+.+.+ .|..........+..-....... +.+.
T Consensus 3 i~~~~~~~~y~~~~~v~l~Sll~nn~~~~~fyil~~~is~e~~~~l~~~~~~~~~~i~~i~i~~~~~~~~~~~~~-~~~~ 81 (248)
T cd06432 3 IFSVASGHLYERFLRIMMLSVMKNTKSPVKFWFIKNFLSPQFKEFLPEMAKEYGFEYELVTYKWPRWLHKQTEKQ-RIIW 81 (248)
T ss_pred EEEEcCcHHHHHHHHHHHHHHHHcCCCCEEEEEEeCCCCHHHHHHHHHHHHHhCCceEEEEecChhhhhcccccc-hhHH
Confidence 455577788999889999998665322 233333 34444444432 24332111111000000000001 1121
Q ss_pred HhHHHHHHHHHhcCCc-eEeeecceeEecCCcccccc-CCCccEEeccCCCCCCccC-cch---hhhh---hcCCcceee
Q 036925 201 REKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVVPTVVD-DRL---DIWQ---QVGAAYNVG 271 (639)
Q Consensus 201 ~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~~~~~d-d~l---e~w~---~~~~~~NtG 271 (639)
..+..++..+|...++ ||+.|+|+|...|=.+.+.. ..++=+.+..|+....... ..+ +.|. .....+|+|
T Consensus 82 ~y~rL~~~~lLP~~vdkvLYLD~Dilv~~dL~eL~~~dl~~~~~Aav~d~~~~~~~~~~~~~~~~~~~~~l~~~~YfNSG 161 (248)
T cd06432 82 GYKILFLDVLFPLNVDKVIFVDADQIVRTDLKELMDMDLKGAPYGYTPFCDSRKEMDGFRFWKQGYWKSHLRGRPYHISA 161 (248)
T ss_pred HHHHHHHHHhhhhccCEEEEEcCCceecccHHHHHhcCcCCCeEEEeeccccchhcccchhhhhhhhhhhcCCCCcccee
Confidence 1233444458887775 99999999999876665542 2233223333431100000 000 0011 112368999
Q ss_pred EEEEecCh-HHHHHHHHHHH---HHHcCC---CCCchHHHHHHHHhhcCCCCCCCccceeeccCceEEEeccccccCCCc
Q 036925 272 IFHWRPTE-SAKKFAKEWKE---MILADD---KIWDQNGFNELIRRQLGPSVSEDSELVYAYDGNLKLGVLPASIFCSGH 344 (639)
Q Consensus 272 f~~~R~T~-~s~~f~~~W~~---~l~~~~---~~~DQ~afN~ll~~~~~~~~~~~~~l~~a~~~~l~v~~Lp~~~F~nGh 344 (639)
+|++-=.. +-..+-+.|.+ .+.... ..+||+++|.++.+. ++..||...
T Consensus 162 VmliNL~~wR~~~i~~~~~~~~~~l~~~~~~l~~~DQDiLN~v~~~~-------------------~i~~Lp~~w----- 217 (248)
T cd06432 162 LYVVDLKRFRRIAAGDRLRGQYQQLSQDPNSLANLDQDLPNNMQHQV-------------------PIFSLPQEW----- 217 (248)
T ss_pred eEEEeHHHHHHHhHHHHHHHHHHHHhcCCCccccCCchhhHHHhccC-------------------CeEECChHH-----
Confidence 99873211 11222333333 222222 347999999998431 356777652
Q ss_pred chhhhhh-hhcCCcceEEEEeccc
Q 036925 345 TYFVQAM-YKQLRLEPYAVHTTFQ 367 (639)
Q Consensus 345 ~yF~q~l-~~~~~~~pyvVHan~~ 367 (639)
.| +..+ ++..+.++-++|.-+.
T Consensus 218 ~~-~~~~~~~~~~~~~~~~~~~~~ 240 (248)
T cd06432 218 LW-CETWCSDESKKKAKTIDLCNN 240 (248)
T ss_pred HH-HHHHhcccccCccceeecccC
Confidence 22 2222 2334567888888774
No 17
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=94.64 E-value=0.82 Score=47.84 Aligned_cols=95 Identities=12% Similarity=0.132 Sum_probs=55.2
Q ss_pred HHHHHHHhHHHHHHHHHhcCC-ceEeeecceeEecCCcccccc-CCCccEEeccCCCCCCccCcchhhhhhcCCcceeeE
Q 036925 195 TFHKMGREKAILIDSVLPFGF-ELLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGI 272 (639)
Q Consensus 195 ~f~~m~~~K~~vl~~lL~~Gy-~VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~~~~~dd~le~w~~~~~~~NtGf 272 (639)
.+..++..|..+ -++|. .+ .||+.|+|+|-.+|=.+.+.. ..+.-+.+-.| .+|+|+
T Consensus 96 ~~s~~~y~Rl~i-p~llp-~~~kvlYLD~Dviv~~dl~eL~~~dl~~~~~aav~d-------------------yfNsGV 154 (257)
T cd06429 96 YISLLNFARFYL-PELFP-KLEKVIYLDDDVVVQKDLTELWNTDLGGGVAGAVET-------------------SWNPGV 154 (257)
T ss_pred ccCHHHHHHHHH-HHHhh-hhCeEEEEeCCEEEeCCHHHHhhCCCCCCEEEEEhh-------------------hcccce
Confidence 344555666653 34444 24 499999999999998777743 11111111111 479999
Q ss_pred EEEec-----ChHHHHHHHHHHHHHHcC----CCCCchHHHHHHHHhh
Q 036925 273 FHWRP-----TESAKKFAKEWKEMILAD----DKIWDQNGFNELIRRQ 311 (639)
Q Consensus 273 ~~~R~-----T~~s~~f~~~W~~~l~~~----~~~~DQ~afN~ll~~~ 311 (639)
|++-- ..-+.+++ .|++..... ....||+++|.++.+.
T Consensus 155 ~linl~~wr~~~i~~~~~-~~~~~~~~~~~~~~~~~dqd~ln~~~~~~ 201 (257)
T cd06429 155 NVVNLTEWRRQNVTETYE-KWMELNQEEEVTLWKLITLPPGLIVFYGL 201 (257)
T ss_pred EEEeHHHHHhccHHHHHH-HHHHHhhhcccchhhcCCccHHHHHccCe
Confidence 98744 33343433 454433221 2345899999888543
No 18
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=91.45 E-value=1.1 Score=47.13 Aligned_cols=96 Identities=20% Similarity=0.253 Sum_probs=57.2
Q ss_pred EEEEcchhhHHHHHHHHHHHHHcCCC--eEEEEE----eCHHHHHHHHh------CCCCeEecCCCCCcCccCCCChHHH
Q 036925 130 IMTFGNYAFMDFILNWVQRLTDLGLS--NILVGA----LDTKLVKALYW------KGVPVFDMGSHMSTMDVGWGSPTFH 197 (639)
Q Consensus 130 IVT~~N~ay~df~~NWl~sl~r~Gv~--n~lVvA----lD~~t~~~c~~------~Gvpcf~~~s~~~~~~~~~Gs~~f~ 197 (639)
||+.+...+..++...|..|+++|-+ ==|+.+ ++++..+.+.. .++.|.......... ...+.|.
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~~~---~~~~~~~ 80 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLPDQDVWFVDASCVIDPDYLGKS---FSKKGFQ 80 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhhhhhhheecceEEeeccccccc---cccCCch
Confidence 34444448888989999999999842 235555 56666666655 333444333211110 0101221
Q ss_pred HHHHhHHHHHHHHHhcCC-ceEeeecceeEecCCccccc
Q 036925 198 KMGREKAILIDSVLPFGF-ELLMCDTDMVWLKNPLPYFA 235 (639)
Q Consensus 198 ~m~~~K~~vl~~lL~~Gy-~VL~sDvDVVWlrDPlpyf~ 235 (639)
.|+. .++-.=+ +||+.|+|+|-++||-.+|+
T Consensus 81 ----~K~l---A~l~ssFeevllLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 81 ----NKWL---ALLFSSFEEVLLLDADNVPLVDPEKLFE 112 (271)
T ss_pred ----hhhh---hhhhCCcceEEEEcCCcccccCHHHHhc
Confidence 3332 2333444 49999999999999999994
No 19
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=90.17 E-value=1.2 Score=45.09 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=70.9
Q ss_pred HHHHhHHHHHHHHHhcCCceEeeecceeEecCCcccccc--CCCccEEeccCCCCCCccCcchhhhhhcCCcceeeEEEE
Q 036925 198 KMGREKAILIDSVLPFGFELLMCDTDMVWLKNPLPYFAR--YPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGIFHW 275 (639)
Q Consensus 198 ~m~~~K~~vl~~lL~~Gy~VL~sDvDVVWlrDPlpyf~~--~~~aDv~vSsD~~~~~~~dd~le~w~~~~~~~NtGf~~~ 275 (639)
....+|--++..+|..==-||+.|+||.- -||--.++. .+.+||.+- |.+ -.| .+.+|-|++
T Consensus 26 d~fFrRHCvva~~L~~~~~vlflDaDigV-vNp~~~iEefid~~~Di~fy-dR~---------~n~-----Ei~agsYlv 89 (222)
T PF03314_consen 26 DKFFRRHCVVAKILPEYDWVLFLDADIGV-VNPNRRIEEFIDEGYDIIFY-DRF---------FNW-----EIAAGSYLV 89 (222)
T ss_pred hHHHHHHHHHHHHhccCCEEEEEcCCcee-ecCcccHHHhcCCCCcEEEE-ecc---------cch-----hhhhcccee
Confidence 34556777788888743349999999854 477533222 467888763 322 223 478999999
Q ss_pred ecChHHHHHHHHHHHHHHcCCC---CCchHHHHHHHHhhcCC
Q 036925 276 RPTESAKKFAKEWKEMILADDK---IWDQNGFNELIRRQLGP 314 (639)
Q Consensus 276 R~T~~s~~f~~~W~~~l~~~~~---~~DQ~afN~ll~~~~~~ 314 (639)
|+|+.++.|++.|.+.=..-|. ..|-.|+...|.+...|
T Consensus 90 kNT~~~~~fl~~~a~~E~~lP~sfhGtDNGAlH~~L~e~l~P 131 (222)
T PF03314_consen 90 KNTEYSRDFLKEWADYEFKLPNSFHGTDNGALHIFLAEKLFP 131 (222)
T ss_pred eCCHHHHHHHHHHhhhCccCCCccccCccHHHHHHHHHHhCc
Confidence 9999999999999987322232 46999999998877654
No 20
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase
Probab=84.12 E-value=3.7 Score=47.73 Aligned_cols=114 Identities=14% Similarity=0.266 Sum_probs=64.1
Q ss_pred cCCCChHHHHH-HHhHHHHHHHHHhcCC-ceEeeecceeEecCCcccccc-CCCccEEeccCCCCCCccCcchhhhh---
Q 036925 189 VGWGSPTFHKM-GREKAILIDSVLPFGF-ELLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVVPTVVDDRLDIWQ--- 262 (639)
Q Consensus 189 ~~~Gs~~f~~m-~~~K~~vl~~lL~~Gy-~VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~~~~~dd~le~w~--- 262 (639)
..+..+.|..+ +..|.. |-+++. .+ .||+.|.|||-.+|-.+.+.. ..+.-+.+..|+...-......-.|.
T Consensus 450 ~k~r~p~ylS~lnY~Rf~-LPelLp-~l~KVLYLD~DVVV~gDLseLw~iDL~g~v~AAVedc~~~f~r~~~ylnfs~P~ 527 (657)
T PLN02910 450 LKYRNPKYLSMLNHLRFY-LPEVYP-KLEKILFLDDDIVVQKDLTPLWSIDMQGMVNGAVETCKESFHRFDKYLNFSNPK 527 (657)
T ss_pred cccCCcchhhHHHHHHHH-HHHHhh-hcCeEEEEeCCEEecCchHHHHhCCcCCceEEEecccchhhhhhhhhhccCChh
Confidence 34444555444 344444 555666 34 499999999999998877643 22333333344421100000000010
Q ss_pred ------hcCCcceeeEEEE-----ecChHHHHHHHHHHHHHHcCCCCCchHHHHH
Q 036925 263 ------QVGAAYNVGIFHW-----RPTESAKKFAKEWKEMILADDKIWDQNGFNE 306 (639)
Q Consensus 263 ------~~~~~~NtGf~~~-----R~T~~s~~f~~~W~~~l~~~~~~~DQ~afN~ 306 (639)
...-..|+|++++ |-..-+. .++.|++. ..+...|||.++|-
T Consensus 528 i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe-~ye~w~el-n~~~~L~dqgsLPp 580 (657)
T PLN02910 528 ISENFDPNACGWAFGMNMFDLKEWRKRNITG-IYHYWQDL-NEDRTLWKLGSLPP 580 (657)
T ss_pred hhhccCCCCceeecccEEEeHHHHHHhhHHH-HHHHHHHh-cccccccccCCCCh
Confidence 1123567899987 4444444 67888875 35567899999994
No 21
>PLN02829 Probable galacturonosyltransferase
Probab=84.01 E-value=5.8 Score=46.22 Aligned_cols=107 Identities=11% Similarity=0.207 Sum_probs=60.8
Q ss_pred HHHHhHHHHHHHHHhcCC-ceEeeecceeEecCCcccccc-CCCccEEeccCCCCCCccCcchhh---------hhhcCC
Q 036925 198 KMGREKAILIDSVLPFGF-ELLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVVPTVVDDRLDI---------WQQVGA 266 (639)
Q Consensus 198 ~m~~~K~~vl~~lL~~Gy-~VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~~~~~dd~le~---------w~~~~~ 266 (639)
.++..|.. |-+++. .+ .|||.|.|||-.+|-.+.+.. ..+.-+.+..|+...-........ +.....
T Consensus 442 ~lnY~Rfy-LPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~~f~r~~~~l~fs~p~i~~~Fn~~~C 519 (639)
T PLN02829 442 ILNHLRFY-LPEIFP-KLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGESFHRFDRYLNFSNPLISKNFDPHAC 519 (639)
T ss_pred HHHHHHHH-HHHHhc-ccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchhhhhhhhhhhhccchHhhhccCCccc
Confidence 34445544 445666 45 499999999999998887653 223333333444211000000000 001123
Q ss_pred cceeeEEEE-----ecChHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 036925 267 AYNVGIFHW-----RPTESAKKFAKEWKEMILADDKIWDQNGFNELI 308 (639)
Q Consensus 267 ~~NtGf~~~-----R~T~~s~~f~~~W~~~l~~~~~~~DQ~afN~ll 308 (639)
.+|+|+|++ |...-+..+ ..|++. ..+...|||.++|-+|
T Consensus 520 yFNSGVmVINL~~WRe~nITe~y-~~wm~~-n~~r~L~dlgaLPp~L 564 (639)
T PLN02829 520 GWAYGMNVFDLDEWKRQNITEVY-HSWQKL-NHDRQLWKLGTLPPGL 564 (639)
T ss_pred ceecceEEEeHHHHHHhChHHHH-HHHHHH-ccCCccccccCCChHH
Confidence 589999976 555555554 578754 3455779999999765
No 22
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.94 E-value=0.77 Score=48.06 Aligned_cols=25 Identities=48% Similarity=0.672 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhCCeeecCCcc
Q 036925 426 QMKQIRTALAIASVLNRTLVMPPLW 450 (639)
Q Consensus 426 ql~q~r~alAlA~~l~RtLVlP~~~ 450 (639)
|..++--.||.|++||||||||++-
T Consensus 44 QaDhFLGsLAFAKaLnRTL~lPpwi 68 (386)
T KOG3849|consen 44 QADHFLGSLAFAKALNRTLVLPPWI 68 (386)
T ss_pred hHHHHHHHHHHHHHhcccccCCcch
Confidence 5566666899999999999999983
No 23
>PLN02659 Probable galacturonosyltransferase
Probab=82.46 E-value=5.7 Score=45.53 Aligned_cols=112 Identities=14% Similarity=0.257 Sum_probs=57.7
Q ss_pred CCChHHHHH-HHhHHHHHHHHHhcCCc-eEeeecceeEecCCcccccc-CCCccEEeccCCCCCCcc--Ccchhh-----
Q 036925 191 WGSPTFHKM-GREKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVVPTVV--DDRLDI----- 260 (639)
Q Consensus 191 ~Gs~~f~~m-~~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~~~~~--dd~le~----- 260 (639)
+..+.|..| +..|+. +-+++. .++ ||+.|.|||-.+|=.+.+.. ..+.=+.+..|+...... ......
T Consensus 321 ~~~p~ylS~~nY~RL~-IPeLLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkv~AAVeDc~~~d~~~~~~~~~~yL~~s 398 (534)
T PLN02659 321 ALSPKYNSVMNHIRIH-LPELFP-SLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGEDKFVMSKKLKSYLNFS 398 (534)
T ss_pred cCCccceeHHHHHHHH-HHHHhh-hcCeEEEeeCCEEEcCchHHHHhCCCCCcEEEEeeccccccchhhhHHHHHhhccc
Confidence 345555544 455554 445565 354 99999999999997776642 122222222333110000 000000
Q ss_pred -------hhhcCCcceeeEEEE-----ecChHHHHHHHHHHHHH-HcCCCCCchHHHH
Q 036925 261 -------WQQVGAAYNVGIFHW-----RPTESAKKFAKEWKEMI-LADDKIWDQNGFN 305 (639)
Q Consensus 261 -------w~~~~~~~NtGf~~~-----R~T~~s~~f~~~W~~~l-~~~~~~~DQ~afN 305 (639)
.......+|+|++++ |...-+.++ ..|++.. ..+-..|||+++|
T Consensus 399 ~p~i~~yFn~~~cYfNsGVlLINLk~WRe~nITek~-l~~l~~n~~~~l~l~DQdaLp 455 (534)
T PLN02659 399 HPLIAKNFDPNECAWAYGMNIFDLEAWRKTNISSTY-HHWLEENLKSDLSLWQLGTLP 455 (534)
T ss_pred chhhhhccCccccceecceeEeeHHHHHhcChHHHH-HHHHHhcccccccccccccch
Confidence 000123678899976 554445443 3444332 1234568999996
No 24
>PLN02870 Probable galacturonosyltransferase
Probab=80.35 E-value=6.8 Score=44.92 Aligned_cols=105 Identities=12% Similarity=0.257 Sum_probs=55.2
Q ss_pred HHHHhHHHHHHHHHhcCC-ceEeeecceeEecCCcccccc-CCCccEEeccCCCCCC--ccCcchhh------------h
Q 036925 198 KMGREKAILIDSVLPFGF-ELLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVVPT--VVDDRLDI------------W 261 (639)
Q Consensus 198 ~m~~~K~~vl~~lL~~Gy-~VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~~~--~~dd~le~------------w 261 (639)
.+...|+. +-+++. -+ .||+.|.|||-.+|-.+.+.. ..+.=+.+-.|+.... .....+.. .
T Consensus 328 ~lny~Rl~-LPelLP-~LdKVLYLD~DVVVqgDLseLw~iDL~gkviaAVeDc~~~~~~~~~~~~~~YfNfs~p~i~~~f 405 (533)
T PLN02870 328 LLNHLRIY-LPELFP-NLDKVVFLDDDVVIQRDLSPLWDIDLGGKVNGAVETCRGEDEWVMSKRFRNYFNFSHPLIAKNL 405 (533)
T ss_pred HHHHHHHH-HHHHhh-hcCeEEEEeCCEEecCcHHHHhhCCCCCceEEEEccccccchhhhhhhhhhhcccccchhhccc
Confidence 34455554 445555 35 499999999999998887753 2222222223431100 00000000 0
Q ss_pred hhcCCcceeeEEEE-----ecChHHHHHHHHHHHH-HHcCCCCCchHHHH
Q 036925 262 QQVGAAYNVGIFHW-----RPTESAKKFAKEWKEM-ILADDKIWDQNGFN 305 (639)
Q Consensus 262 ~~~~~~~NtGf~~~-----R~T~~s~~f~~~W~~~-l~~~~~~~DQ~afN 305 (639)
....-..|+|++++ |...-+.++ ..|++. ...+-..|||+++|
T Consensus 406 d~~~cyfNSGVlLINL~~WRe~nITek~-~~~l~~n~~~~l~l~DQdaLp 454 (533)
T PLN02870 406 DPEECAWAYGMNIFDLRAWRKTNIRETY-HSWLKENLKSNLTMWKLGTLP 454 (533)
T ss_pred CcccceeeccchhccHHHHHHcChHHHH-HHHHHhhhhcCceeccccccc
Confidence 01123578999965 555555444 344433 22234679999996
No 25
>PLN02867 Probable galacturonosyltransferase
Probab=78.55 E-value=12 Score=43.18 Aligned_cols=115 Identities=14% Similarity=0.229 Sum_probs=59.9
Q ss_pred CCChHHHH-HHHhHHHHHHHHHhcCCc-eEeeecceeEecCCcccccc-CCCccEEeccCCCCCCc--cCcchhh-----
Q 036925 191 WGSPTFHK-MGREKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVVPTV--VDDRLDI----- 260 (639)
Q Consensus 191 ~Gs~~f~~-m~~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~~~~--~dd~le~----- 260 (639)
...+.|.. ++..|+. |-+++. .++ ||+.|.|||-.+|-.+.+.. ..+.-+..-.|...... ....+..
T Consensus 322 ~~~pkylS~lnYlRfl-IPeLLP-~LdKVLYLD~DVVVqgDLseLwdiDL~gkviaAV~D~~c~~~~~~~~~~~~YlNfs 399 (535)
T PLN02867 322 ALSPSCLSLLNHLRIY-IPELFP-DLNKIVFLDDDVVVQHDLSSLWELDLNGKVVGAVVDSWCGDNCCPGRKYKDYLNFS 399 (535)
T ss_pred hcChhhhhHHHHHHHH-HHHHhh-ccCeEEEecCCEEEcCchHHHHhCcCCCCeEEEEeccccccccccchhhhhhcccc
Confidence 34455554 4556555 555666 354 99999999999998777753 11211222222110000 0000000
Q ss_pred -------hhhcCCcceeeEEEE-----ecChHHHHHHHHHHHHHHc-CCCCCchHHHHHHH
Q 036925 261 -------WQQVGAAYNVGIFHW-----RPTESAKKFAKEWKEMILA-DDKIWDQNGFNELI 308 (639)
Q Consensus 261 -------w~~~~~~~NtGf~~~-----R~T~~s~~f~~~W~~~l~~-~~~~~DQ~afN~ll 308 (639)
.......+|+|++.+ |...-+.+ +..|++.-.. ....|||+++|..|
T Consensus 400 np~i~~~~~p~~cYFNSGVmLINL~~WRe~nITek-~~~~Le~n~~~~~~l~dqd~LN~~L 459 (535)
T PLN02867 400 HPLISSNLDQERCAWLYGMNVFDLKAWRRTNITEA-YHKWLKLSLNSGLQLWQPGALPPAL 459 (535)
T ss_pred chhhhccCCCCCcceecceeeeeHHHHHHhcHHHH-HHHHHHhchhcccccccccccchHH
Confidence 001133689999987 44433333 3455554221 24679999999744
No 26
>PLN02523 galacturonosyltransferase
Probab=77.74 E-value=32 Score=39.88 Aligned_cols=104 Identities=11% Similarity=0.200 Sum_probs=55.5
Q ss_pred HHHhHHHHHHHHHhcCCc-eEeeecceeEecCCcccccc-CCCccEEeccCCCCCCccCcchhhhh--hcCCccee----
Q 036925 199 MGREKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVVPTVVDDRLDIWQ--QVGAAYNV---- 270 (639)
Q Consensus 199 m~~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~~~~~dd~le~w~--~~~~~~Nt---- 270 (639)
.+..|+. |-+++.. ++ ||+.|.|||-.+|-.+.+.. ..+.=+.+..|+............+. .....+|+
T Consensus 363 ~ny~Rf~-IPeLLP~-ldKVLYLD~DVVVq~DLseLw~iDL~gkv~aAVeDc~~~~~r~~~~ln~s~p~i~~yFNs~aC~ 440 (559)
T PLN02523 363 LNHLRFY-LPEMYPK-LHRILFLDDDVVVQKDLTGLWKIDMDGKVNGAVETCFGSFHRYAQYLNFSHPLIKEKFNPKACA 440 (559)
T ss_pred HHHHHHH-HHHHhcc-cCeEEEEeCCEEecCCHHHHHhCcCCCceEEEehhhhhHHHHHHHhhcccchhhhhCcCCCccc
Confidence 3445544 4456663 54 99999999999998877742 12221223344421000000000000 00123555
Q ss_pred ---eEEEE-----ecChHHHHHHHHHHHHHHcCCCCCchHHHHH
Q 036925 271 ---GIFHW-----RPTESAKKFAKEWKEMILADDKIWDQNGFNE 306 (639)
Q Consensus 271 ---Gf~~~-----R~T~~s~~f~~~W~~~l~~~~~~~DQ~afN~ 306 (639)
|++++ |...-+.++ ..|.+. ..+...|||.++|-
T Consensus 441 wnsGVmlINL~~WRe~nITek~-~~w~~l-n~~~~l~DqdaLpp 482 (559)
T PLN02523 441 WAYGMNIFDLDAWRREKCTEQY-HYWQNL-NENRTLWKLGTLPP 482 (559)
T ss_pred ccCCcEEEeHHHHHHhchHHHH-HHHHHh-ccccccccccccch
Confidence 99976 555555554 566653 44567899999973
No 27
>PLN02742 Probable galacturonosyltransferase
Probab=74.73 E-value=39 Score=39.02 Aligned_cols=108 Identities=14% Similarity=0.244 Sum_probs=61.7
Q ss_pred HHHHHhHHHHHHHHHhcCC-ceEeeecceeEecCCcccccc-CCCccEEeccCCCC------CCcc-Ccch--hhhhhcC
Q 036925 197 HKMGREKAILIDSVLPFGF-ELLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVV------PTVV-DDRL--DIWQQVG 265 (639)
Q Consensus 197 ~~m~~~K~~vl~~lL~~Gy-~VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~------~~~~-dd~l--e~w~~~~ 265 (639)
...+..|.. +-+++.. + .||+.|+|||..+|-.+.+.. ..+.=+.+..||.. .... .++. +......
T Consensus 337 s~~~y~R~~-lP~llp~-l~KvlYLD~DvVV~~DL~eL~~~DL~~~viaAVedC~~~f~ry~~yLnfS~p~i~~~f~~~a 414 (534)
T PLN02742 337 SMLNHLRFY-IPEIYPA-LEKVVFLDDDVVVQKDLTPLFSIDLHGNVNGAVETCLETFHRYHKYLNFSHPLISSHFDPDA 414 (534)
T ss_pred cHHHHHHHH-HHHHhhc-cCeEEEEeCCEEecCChHHHhcCCCCCCEEEEeCchhhhhhhhhhhhcccchhhhccCCCCc
Confidence 344556655 4445553 4 599999999999998877753 22333344445510 0000 0000 0000112
Q ss_pred CcceeeEEEE-----ecChHHHHHHHHHHHHHHcCCCCCchHHHHHHH
Q 036925 266 AAYNVGIFHW-----RPTESAKKFAKEWKEMILADDKIWDQNGFNELI 308 (639)
Q Consensus 266 ~~~NtGf~~~-----R~T~~s~~f~~~W~~~l~~~~~~~DQ~afN~ll 308 (639)
-..|+|++.+ |...-+. .++.|.+. ..+...|||.++|-++
T Consensus 415 C~fNsGV~ViDL~~WRe~nITe-~~~~w~e~-n~~~~l~d~gaLpp~L 460 (534)
T PLN02742 415 CGWAFGMNVFDLVAWRKANVTA-IYHYWQEQ-NVDRTLWKLGTLPPGL 460 (534)
T ss_pred cccccCcEEEeHHHHHhhcHHH-HHHHHHHh-ccccccccccccchHH
Confidence 3579999976 4444444 66788865 3455789999999764
No 28
>PLN02769 Probable galacturonosyltransferase
Probab=70.45 E-value=72 Score=37.63 Aligned_cols=36 Identities=8% Similarity=0.233 Sum_probs=26.0
Q ss_pred HHHHhHHHHHHHHHhcCC-ceEeeecceeEecCCccccc
Q 036925 198 KMGREKAILIDSVLPFGF-ELLMCDTDMVWLKNPLPYFA 235 (639)
Q Consensus 198 ~m~~~K~~vl~~lL~~Gy-~VL~sDvDVVWlrDPlpyf~ 235 (639)
.++..|+. |-+++. .+ .|||.|.|||-.+|-.+.+.
T Consensus 437 ~~nh~Rfy-IPELLP-~LdKVLYLD~DVVVqgDLseLw~ 473 (629)
T PLN02769 437 VFSHSHFL-LPEIFK-KLKKVVVLDDDVVVQRDLSFLWN 473 (629)
T ss_pred HHHHHHHH-HHHHhh-hcCeEEEEeCCEEecCcHHHHhc
Confidence 34455554 555666 34 59999999999999888775
No 29
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=69.95 E-value=18 Score=38.22 Aligned_cols=117 Identities=10% Similarity=0.218 Sum_probs=68.9
Q ss_pred CCCccCC--CCCCCCCCcccchHHHHHHHhcC--CCe-EEEEEcchhhHHHHHHHHHHHHHc---CCC-eEEEEEeCHHH
Q 036925 96 KPIWEVP--QTKRLPSLKSFQLTKELVEQRVQ--DNI-IIMTFGNYAFMDFILNWVQRLTDL---GLS-NILVGALDTKL 166 (639)
Q Consensus 96 ~~~w~~p--~~~~~P~~~~~~L~r~L~~~~A~--d~t-VIVT~~N~ay~df~~NWl~sl~r~---Gv~-n~lVvAlD~~t 166 (639)
..+|.-| -.. ..+++++++.-+ |=+ =|+.++-..|..|+..+++|..+. |.+ ++.|.+-+...
T Consensus 7 ~T~W~APivweg--------tf~~~~l~~~y~~~n~tIgl~vfatGkY~~f~~~F~~SAEk~Fm~g~~v~YyVFTD~~~~ 78 (271)
T cd02515 7 VTPWLAPIVWEG--------TFNPDVLDEYYRKQNITIGLTVFAVGKYTEFLERFLESAEKHFMVGYRVIYYIFTDKPAA 78 (271)
T ss_pred ecCccCceeecC--------cCCHHHHHHHHHhcCCEEEEEEEEeccHHHHHHHHHHHHHHhccCCCeeEEEEEeCCccc
Confidence 4478877 222 245677777653 333 344556677889999999999888 443 46666554444
Q ss_pred HHHHH---hCCCCeEecCCCCCcCccCCCChHHHHHHHhHHHHHHHHHh----cCCc-eEeeecceeEecCC
Q 036925 167 VKALY---WKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKAILIDSVLP----FGFE-LLMCDTDMVWLKNP 230 (639)
Q Consensus 167 ~~~c~---~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~vl~~lL~----~Gy~-VL~sDvDVVWlrDP 230 (639)
+...+ .+.+.++.... .. .|..++..|...+....+ ..+| +++.|+|+++.++=
T Consensus 79 ~p~v~lg~~r~~~V~~v~~-----~~-----~W~~~sl~Rm~~~~~~~~~~~~~e~DYlF~~dvd~~F~~~i 140 (271)
T cd02515 79 VPEVELGPGRRLTVLKIAE-----ES-----RWQDISMRRMKTLADHIADRIGHEVDYLFCMDVDMVFQGPF 140 (271)
T ss_pred CcccccCCCceeEEEEecc-----cc-----CCcHHHHHHHHHHHHHHHHhhcccCCEEEEeeCCceEeecC
Confidence 33222 12334444321 12 344455556666655544 3566 77789999987763
No 30
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=67.00 E-value=57 Score=27.96 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHhC-CCCeEecCCCCCcCccCCCChHHHHHHHhHHHHHHHHHhcCCc
Q 036925 140 DFILNWVQRLTDLGLSNILVGAL--DTKLVKALYWK-GVPVFDMGSHMSTMDVGWGSPTFHKMGREKAILIDSVLPFGFE 216 (639)
Q Consensus 140 df~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~~-Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~vl~~lL~~Gy~ 216 (639)
+++..|+.+..++|+++++|+-- ++.+.+.|.+. ++.++.... .+.. ...++.+.+. ++.. ..+.+
T Consensus 5 ~~L~~wl~~~~~lG~d~i~i~d~~s~D~t~~~l~~~~~v~i~~~~~-------~~~~-~~~~~~~~~~-~~~~--~~~~d 73 (97)
T PF13704_consen 5 DYLPEWLAHHLALGVDHIYIYDDGSTDGTREILRALPGVGIIRWVD-------PYRD-ERRQRAWRNA-LIER--AFDAD 73 (97)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCCccHHHHHHhCCCcEEEEeCC-------Cccc-hHHHHHHHHH-HHHh--CCCCC
Confidence 57889999999999999777543 35678888764 443333221 1211 1122222221 2221 12555
Q ss_pred -eEeeecceeEecCC
Q 036925 217 -LLMCDTDMVWLKNP 230 (639)
Q Consensus 217 -VL~sDvDVVWlrDP 230 (639)
+++.|+|=++.-++
T Consensus 74 Wvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 74 WVLFLDADEFLVPPP 88 (97)
T ss_pred EEEEEeeeEEEecCC
Confidence 99999998777665
No 31
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=61.39 E-value=13 Score=29.27 Aligned_cols=50 Identities=24% Similarity=0.460 Sum_probs=40.8
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC-----cc-ccccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS-----MK-NAFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~-----~~-~~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.+..+.-+++.. .. -+|-.|.+.+.+++.-+.++.
T Consensus 6 lp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g 61 (70)
T PF00076_consen 6 LPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNG 61 (70)
T ss_dssp ETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCC
Confidence 899999999999999999987766643 12 268899999999888777764
No 32
>PLN02718 Probable galacturonosyltransferase
Probab=57.73 E-value=33 Score=40.13 Aligned_cols=103 Identities=8% Similarity=0.196 Sum_probs=55.5
Q ss_pred HHHhHHHHHHHHHhcCC-ceEeeecceeEecCCcccccc-CCCccEEeccCCCCCCccCcchh---hhh---------hc
Q 036925 199 MGREKAILIDSVLPFGF-ELLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVVPTVVDDRLD---IWQ---------QV 264 (639)
Q Consensus 199 m~~~K~~vl~~lL~~Gy-~VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~~~~~dd~le---~w~---------~~ 264 (639)
++..|+. +-+++.. + .||+.|+|||..+|-.+.+.- ..+.-+.+-.||.........+. .+. ..
T Consensus 404 ~~y~Rl~-ipellp~-l~KvLYLD~DvVV~~DL~eL~~iDl~~~v~aaVedC~~~~~~~~~~~~~lnfs~p~i~~~fn~~ 481 (603)
T PLN02718 404 LNHARFY-LPDIFPG-LNKIVLFDHDVVVQRDLSRLWSLDMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAKKFDPK 481 (603)
T ss_pred HHHHHHH-HHHHhcc-cCEEEEEECCEEecCCHHHHhcCCCCCcEEEEeccccccccchhhhhhhhhccchhhhcccCCC
Confidence 3444554 3345553 4 499999999999998887642 22322333345432100000000 010 01
Q ss_pred CCcceeeEEEE-----ecChHHHHHHHHHHHHHHcCCCCCchHHHH
Q 036925 265 GAAYNVGIFHW-----RPTESAKKFAKEWKEMILADDKIWDQNGFN 305 (639)
Q Consensus 265 ~~~~NtGf~~~-----R~T~~s~~f~~~W~~~l~~~~~~~DQ~afN 305 (639)
.-..|+|++.+ |...-+.. +..|++.- .....|||.++|
T Consensus 482 ~CyfNsGVlLIDLk~WReenITe~-~~~~l~~n-~~~~l~dqdaLp 525 (603)
T PLN02718 482 ACTWAFGMNLFDLEEWRRQKLTSV-YHKYLQLG-VKRPLWKAGSLP 525 (603)
T ss_pred ccccccceEEEeHHHHHhcChHHH-HHHHHHhc-cCccccCccccc
Confidence 23578999976 44444444 45566542 234679999998
No 33
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=45.18 E-value=2.6e+02 Score=27.83 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=51.2
Q ss_pred HHHHHHhcCCCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHhCCCCeEecCCCCCcCccCCCCh
Q 036925 117 KELVEQRVQDNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL--DTKLVKALYWKGVPVFDMGSHMSTMDVGWGSP 194 (639)
Q Consensus 117 r~L~~~~A~d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~ 194 (639)
+.+.+...+.+.-++...+..-.+...+-++.+...+++-++++.. ++...+.+.+.|+|++............+=..
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~l~~~~iPvv~~~~~~~~~~~~~v~~ 98 (268)
T cd06273 19 QAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHSPALLDLLARRGVPYVATWNYSPDSPYPCVGF 98 (268)
T ss_pred HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEcCCCCCCCCCEEEe
Confidence 3444444445533333322222233445566666668887777654 56777888889999887654222111222222
Q ss_pred HHHHHHHhHHHHHHHHHhcCCc
Q 036925 195 TFHKMGREKAILIDSVLPFGFE 216 (639)
Q Consensus 195 ~f~~m~~~K~~vl~~lL~~Gy~ 216 (639)
++.+.+.. ++..+++.|+.
T Consensus 99 d~~~~~~~---~~~~l~~~g~~ 117 (268)
T cd06273 99 DNREAGRL---AARHLIALGHR 117 (268)
T ss_pred ChHHHHHH---HHHHHHHCCCC
Confidence 33344333 34555667865
No 34
>KOG4748 consensus Subunit of Golgi mannosyltransferase complex [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=44.23 E-value=27 Score=38.39 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=86.3
Q ss_pred HHHhHHHHHHHHHhcCCc---eEeeecceeEecCCcc----cccc-------CC-CccEEeccCC--CCC-CccCcchhh
Q 036925 199 MGREKAILIDSVLPFGFE---LLMCDTDMVWLKNPLP----YFAR-------YP-DADILTSSDQ--VVP-TVVDDRLDI 260 (639)
Q Consensus 199 m~~~K~~vl~~lL~~Gy~---VL~sDvDVVWlrDPlp----yf~~-------~~-~aDv~vSsD~--~~~-~~~dd~le~ 260 (639)
..|.|+.+|++.+..=-+ +.+.|.|.+.+.-=+. .+.. .+ +.-.+..... ..+ +.-.+-.+.
T Consensus 158 ~~W~KiP~Ir~tM~kyP~AeWIWWlD~DAlimn~~lsL~~~ilk~~~L~~~l~~nd~~~~~~~n~~~~~~~~~~~d~~~~ 237 (364)
T KOG4748|consen 158 GVWAKLPAIRQTMLKYPDAEWIWWLDQDALIMNPDLSLQDHILKPENLVTHLLRNDQKSINPLNIFRLRPRTPSLDDLED 237 (364)
T ss_pred chhHHhHHHHHHHHHCCCCcEEEEecccchhhCcccchhHHhcCHHHHHHhhccccccccccCCccccccccccccchhh
Confidence 358888888888876544 7888888866531111 1111 11 1111111110 000 000111222
Q ss_pred hh----hcCCcceeeEEEEecChHHHHHHHHHHHHHHcCC--CCCchHHHHHHHHhhcCCCCCCCccceeeccCceEEEe
Q 036925 261 WQ----QVGAAYNVGIFHWRPTESAKKFAKEWKEMILADD--KIWDQNGFNELIRRQLGPSVSEDSELVYAYDGNLKLGV 334 (639)
Q Consensus 261 w~----~~~~~~NtGf~~~R~T~~s~~f~~~W~~~l~~~~--~~~DQ~afN~ll~~~~~~~~~~~~~l~~a~~~~l~v~~ 334 (639)
|. +....+|+|=+++|.++-++.+++.|-+-+..+. ...+|.++-.++..+.-. -=.+++
T Consensus 238 ~~~ii~qD~nG~naGSfLirns~~~~~llD~w~dp~l~~~~~~~~Eq~al~~~~e~h~~l--------------~~~vgi 303 (364)
T KOG4748|consen 238 IAFIIPQDCNGINAGSFLIRNSEWGRLLLDAWNDPLLYELLWGQKEQDALGHFLENHPQL--------------HSHVGI 303 (364)
T ss_pred hceecccCCCCccccceEEecCccchhHHHhccCHHHHhhccchHHHHHHHHHHhhchhh--------------hhheee
Confidence 21 1234599999999999999999999988654432 456999999999765411 014567
Q ss_pred ccccc---cCCCcchhhhhhhhcCCcceEEEEecccCCC
Q 036925 335 LPASI---FCSGHTYFVQAMYKQLRLEPYAVHTTFQYAG 370 (639)
Q Consensus 335 Lp~~~---F~nGh~yF~q~l~~~~~~~pyvVHan~~~~G 370 (639)
||... |++|+-.+ . -...++++|+-- |.+
T Consensus 304 lp~r~ins~~~~~~~~-----g-~~egdlvvhFaG-C~~ 335 (364)
T KOG4748|consen 304 LPLRYINSYPNGAPGY-----G-YEEGDLVVHFAG-CYV 335 (364)
T ss_pred ccHHHHhcCCCCCCCC-----c-cccCCeEEEecc-ccc
Confidence 77654 55555322 1 123589999885 533
No 35
>smart00362 RRM_2 RNA recognition motif.
Probab=44.03 E-value=44 Score=25.48 Aligned_cols=49 Identities=24% Similarity=0.466 Sum_probs=36.6
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc----c-ccccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM----K-NAFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~----~-~~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.|+.+..++-+.+..- . -+|-.|.+...+++.-+.+.
T Consensus 7 l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~ 60 (72)
T smart00362 7 LPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALN 60 (72)
T ss_pred CCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhC
Confidence 6889999999999999887665555322 2 36888999988887765554
No 36
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=42.30 E-value=1.1e+02 Score=27.94 Aligned_cols=61 Identities=10% Similarity=0.246 Sum_probs=46.1
Q ss_pred hcCCCeEEEEEcchhh---HHHHHHHHHHHHHcCCCeEEEE------EeCHHHHHHHHhCCCCeEecCCC
Q 036925 123 RVQDNIIIMTFGNYAF---MDFILNWVQRLTDLGLSNILVG------ALDTKLVKALYWKGVPVFDMGSH 183 (639)
Q Consensus 123 ~A~d~tVIVT~~N~ay---~df~~NWl~sl~r~Gv~n~lVv------AlD~~t~~~c~~~Gvpcf~~~s~ 183 (639)
..+.+++++|.+-.-. .+.+.++++.+.+.|+.-+.|- .+.+++.+.|.+.++|.+.++..
T Consensus 39 ~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~~ 108 (123)
T PF07905_consen 39 WLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPWE 108 (123)
T ss_pred hCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCCC
Confidence 3677888888755322 2357899999999887654442 46799999999999999998754
No 37
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=41.86 E-value=96 Score=27.98 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=48.5
Q ss_pred cCCCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeCHHHHHHHHhCCCCeEecCCCC
Q 036925 124 VQDNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALDTKLVKALYWKGVPVFDMGSHM 184 (639)
Q Consensus 124 A~d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD~~t~~~c~~~Gvpcf~~~s~~ 184 (639)
...+.+++.+...+.-.-+..-++.+++.|++ ++.++-+.+..+.|.+.|.+++.++.+.
T Consensus 41 ~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~-iI~IT~~~~l~~~~~~~~~~~~~~p~~~ 100 (119)
T cd05017 41 VDRKTLVIAVSYSGNTEETLSAVEQAKERGAK-IVAITSGGKLLEMAREHGVPVIIIPKGL 100 (119)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCE-EEEEeCCchHHHHHHHcCCcEEECCCCC
Confidence 45678888899999888888889999999974 5666667788888888899999987654
No 38
>PF04765 DUF616: Protein of unknown function (DUF616); InterPro: IPR006852 The entry represents a protein of unknown function. The function of is unknown although a number of the members are thought to be glycosyltransferases.
Probab=40.99 E-value=61 Score=34.99 Aligned_cols=184 Identities=14% Similarity=0.154 Sum_probs=100.4
Q ss_pred HhcCCCeEEEEEcchhhHHHHHH--HHHHHHHcCCCeEEEEEeCHHHHHHHHhCCCC-eEecCCCC----CcCccCCCCh
Q 036925 122 QRVQDNIIIMTFGNYAFMDFILN--WVQRLTDLGLSNILVGALDTKLVKALYWKGVP-VFDMGSHM----STMDVGWGSP 194 (639)
Q Consensus 122 ~~A~d~tVIVT~~N~ay~df~~N--Wl~sl~r~Gv~n~lVvAlD~~t~~~c~~~Gvp-cf~~~s~~----~~~~~~~Gs~ 194 (639)
...+=+ |+|.++-.+=.|.+.. -+.....-.+. .++-.|+++.+.+++.|.. .-....+. .-....+.+.
T Consensus 59 ~m~~c~-vvV~saIFG~yD~l~qP~~i~~~s~~~vc--f~mF~D~~t~~~l~~~~~~~~~~~~ig~WrIv~v~~lp~~d~ 135 (305)
T PF04765_consen 59 YMEKCR-VVVYSAIFGNYDKLRQPKNISEYSKKNVC--FFMFVDEETLKSLESEGHIPDENKKIGIWRIVVVKNLPYDDP 135 (305)
T ss_pred HHhcCC-EEEEEEecCCCccccCchhhCHHHhcCcc--EEEEEehhhHHHHHhcCCccccccccCceEEEEecCCCCcch
Confidence 333444 7777777665554321 01111111222 4556799999999886532 10000000 0001111111
Q ss_pred HHHHHHHhHHHHHHHHHhcCCc-eEeeecceeEecCCccccccC---CCccEEeccCCCCCCc-----------------
Q 036925 195 TFHKMGREKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFARY---PDADILTSSDQVVPTV----------------- 253 (639)
Q Consensus 195 ~f~~m~~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~~---~~aDv~vSsD~~~~~~----------------- 253 (639)
.+..+-++++-..+=-.|+ -|++|+-+....||+.++.++ .++|+.++.=.....+
T Consensus 136 ---rr~~r~~K~lpHrlfp~y~ySIWID~ki~L~~Dp~~lie~~l~~~~~~~Ai~~H~~R~cvyeEa~a~~~~~k~~~~~ 212 (305)
T PF04765_consen 136 ---RRNGRIPKLLPHRLFPNYDYSIWIDGKIQLIVDPLLLIERFLWRKNADIAISKHPERNCVYEEAEACKRLGKYDPER 212 (305)
T ss_pred ---hhcCcccceeccccCCCCceEEEEeeeEEEecCHHHHHHHHHhcCCCcEEEeCCCCcccHHHHHHHHHHhcCCChHH
Confidence 1111224444444444565 789999999999998776653 5788888632221110
Q ss_pred c--------CcchhhhhhcC-----CcceeeEEEEecChHHHHHHHHHHHHHHcCCCCCchHHHHHHHHhhc
Q 036925 254 V--------DDRLDIWQQVG-----AAYNVGIFHWRPTESAKKFAKEWKEMILADDKIWDQNGFNELIRRQL 312 (639)
Q Consensus 254 ~--------dd~le~w~~~~-----~~~NtGf~~~R~T~~s~~f~~~W~~~l~~~~~~~DQ~afN~ll~~~~ 312 (639)
. .+++..|.... ...-+++++=+.|+.+..|+..|-+.+.+. ...||-.|+-++.+..
T Consensus 213 I~~Qm~~Y~~eGlp~~s~~k~~l~s~v~E~~iIiR~H~~~~nlf~clWfnEv~rf-s~RDQLSF~Yv~wk~~ 283 (305)
T PF04765_consen 213 IDEQMEFYKQEGLPPWSPAKLPLPSDVPEGNIIIRKHNPMSNLFMCLWFNEVERF-SPRDQLSFPYVLWKLG 283 (305)
T ss_pred HHHHHHHHHHcCCCcccccccccccCCccceEEEecCCchhHHHHHHHHHHHhcC-CCcccchHHHHHHHhC
Confidence 0 01222221101 122466777677888888999999988665 4589999999987653
No 39
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=40.57 E-value=2.8e+02 Score=27.55 Aligned_cols=95 Identities=9% Similarity=0.101 Sum_probs=50.7
Q ss_pred HHHHHhcCCCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHhCCCCeEecCCCCCcCccC-CCCh
Q 036925 118 ELVEQRVQDNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL--DTKLVKALYWKGVPVFDMGSHMSTMDVG-WGSP 194 (639)
Q Consensus 118 ~L~~~~A~d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~~Gvpcf~~~s~~~~~~~~-~Gs~ 194 (639)
.+.+...+.|.-++.+....-.+-...-++.+...+++-+|+... +...++.+.+.|+|++............ .++.
T Consensus 20 gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~~~~~~~~~~~~~v~~d 99 (265)
T cd06299 20 AIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSAEQLEDLLKRGIPVVFVDREITGSPIPFVTSD 99 (265)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCChHHHHHHHhCCCCEEEEecccCCCCCCEEEEC
Confidence 333333444444444322222233345566677788988888765 3345788888999988776543221111 1222
Q ss_pred HHHHHHHhHHHHHHHHHhcCCc
Q 036925 195 TFHKMGREKAILIDSVLPFGFE 216 (639)
Q Consensus 195 ~f~~m~~~K~~vl~~lL~~Gy~ 216 (639)
.+ .. --..+..+++.|+.
T Consensus 100 ~~-~~---~~~~~~~l~~~g~~ 117 (265)
T cd06299 100 PQ-PG---MTEAVSLLVALGHK 117 (265)
T ss_pred cH-HH---HHHHHHHHHHcCCC
Confidence 22 22 12345667778864
No 40
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=38.92 E-value=4.1e+02 Score=26.50 Aligned_cols=45 Identities=27% Similarity=0.390 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEEeCH----HHHHHHHhCCCCeEecCCC
Q 036925 139 MDFILNWVQRLTDLGLSNILVGALDT----KLVKALYWKGVPVFDMGSH 183 (639)
Q Consensus 139 ~df~~NWl~sl~r~Gv~n~lVvAlD~----~t~~~c~~~Gvpcf~~~s~ 183 (639)
.+-..+-+..+...+++-++|.+.|. +..+.+.+.|+|++.....
T Consensus 42 ~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~~~~ 90 (272)
T cd06301 42 VATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANAAGIPLVYVNRR 90 (272)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHHCCCeEEEecCC
Confidence 34455667777777899888887663 4556778889998876543
No 41
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.46 E-value=2.1e+02 Score=28.72 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=44.3
Q ss_pred HHHHHHHHHcCCCeEEEEEeCHHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhHHHHHHHHHhcCCc
Q 036925 143 LNWVQRLTDLGLSNILVGALDTKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKAILIDSVLPFGFE 216 (639)
Q Consensus 143 ~NWl~sl~r~Gv~n~lVvAlD~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~vl~~lL~~Gy~ 216 (639)
..-++.+...+++-+++...+++..+.+.+.++|++............+=..++.+.+.. ++..+++.|+.
T Consensus 40 ~~~~~~l~~~~vdGiI~~~~~~~~~~~l~~~~~PvV~~~~~~~~~~~~~v~~d~~~~g~~---~~~~l~~~g~~ 110 (265)
T cd01543 40 QEPLRWLKDWQGDGIIARIDDPEMAEALQKLGIPVVDVSGSREKPGIPRVTTDNAAIGRM---AAEHFLERGFR 110 (265)
T ss_pred hhhhhhccccccceEEEECCCHHHHHHHhhCCCCEEEEeCccCCCCCCEEeeCHHHHHHH---HHHHHHHCCCc
Confidence 445555666678888887778888888888999987775432222222222334444432 45667788875
No 42
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.33 E-value=4.1e+02 Score=26.40 Aligned_cols=73 Identities=19% Similarity=0.288 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeC--HHHHHHHHhCCCCeEecCCCCCc-CccC-CCChHHHHHHHhHHHHHHHHHhcCC
Q 036925 140 DFILNWVQRLTDLGLSNILVGALD--TKLVKALYWKGVPVFDMGSHMST-MDVG-WGSPTFHKMGREKAILIDSVLPFGF 215 (639)
Q Consensus 140 df~~NWl~sl~r~Gv~n~lVvAlD--~~t~~~c~~~Gvpcf~~~s~~~~-~~~~-~Gs~~f~~m~~~K~~vl~~lL~~Gy 215 (639)
+-....++.+...+++-+++.+.| ....+.+.+.|+|++........ .... .++.. ...+.. ....+++.|+
T Consensus 42 ~~~~~~i~~l~~~~~dgiii~~~~~~~~~~~~~~~~~ipvV~i~~~~~~~~~~~~v~~d~-~~~~~~---a~~~l~~~g~ 117 (270)
T cd06296 42 SPERQWVERLSARRTDGVILVTPELTSAQRAALRRTGIPFVVVDPAGDPDADVPSVGATN-WAGGLA---ATEHLLELGH 117 (270)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHhcCCCCEEEEecccCCCCCCCEEEeCc-HHHHHH---HHHHHHHcCC
Confidence 444567777877788888777654 45577788889999887643211 1222 23333 333332 2445666787
Q ss_pred c
Q 036925 216 E 216 (639)
Q Consensus 216 ~ 216 (639)
.
T Consensus 118 ~ 118 (270)
T cd06296 118 R 118 (270)
T ss_pred C
Confidence 4
No 43
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=35.30 E-value=4.5e+02 Score=26.25 Aligned_cols=65 Identities=14% Similarity=0.244 Sum_probs=38.6
Q ss_pred HHHHHhcCC-C-eEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC----HHHHHHHHhCCCCeEecCCC
Q 036925 118 ELVEQRVQD-N-IIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD----TKLVKALYWKGVPVFDMGSH 183 (639)
Q Consensus 118 ~L~~~~A~d-~-tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD----~~t~~~c~~~Gvpcf~~~s~ 183 (639)
.+.+..++. + .+++..++... +--.+.++.+...+++-+++...+ .+..+.+.+.|+|++.....
T Consensus 20 ~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~ 90 (270)
T cd06308 20 EIQREASNYPDVELIIADAADDN-SKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYRAGIPVILLDRK 90 (270)
T ss_pred HHHHHHHhcCCcEEEEEcCCCCH-HHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHHCCCCEEEeCCC
Confidence 333334442 3 45554443333 233466777777788877777655 33456677889999877653
No 44
>smart00360 RRM RNA recognition motif.
Probab=34.26 E-value=64 Score=24.37 Aligned_cols=49 Identities=22% Similarity=0.463 Sum_probs=35.7
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc------c-ccccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM------K-NAFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~------~-~~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++++..+.-+++... . -+|--|.+...+.+.-+.+.
T Consensus 4 l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~ 59 (71)
T smart00360 4 LPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALN 59 (71)
T ss_pred CCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcC
Confidence 5888999999999998876555544322 2 36888999988887766554
No 45
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=34.26 E-value=4.2e+02 Score=26.15 Aligned_cols=94 Identities=12% Similarity=0.228 Sum_probs=50.3
Q ss_pred HHHHHhcCCC-eEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC--HHHHHHHHhCCCCeEecCCCCCcCccC-CCC
Q 036925 118 ELVEQRVQDN-IIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD--TKLVKALYWKGVPVFDMGSHMSTMDVG-WGS 193 (639)
Q Consensus 118 ~L~~~~A~d~-tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD--~~t~~~c~~~Gvpcf~~~s~~~~~~~~-~Gs 193 (639)
.+.+.....+ .+++...+.. .+-...-+..+...+++-+++...| ....+.+.+.|+|++............ .+.
T Consensus 20 ~i~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~~dgiii~~~~~~~~~l~~~~~~~ipvV~~~~~~~~~~~~~v~~ 98 (267)
T cd06283 20 GIEDVCRAHGYQVLVCNSDND-PEKEKEYLESLLAYQVDGLIVNPTGNNKELYQRLAKNGKPVVLVDRKIPELGVDTVTL 98 (267)
T ss_pred HHHHHHHHcCCEEEEEcCCCC-HHHHHHHHHHHHHcCcCEEEEeCCCCChHHHHHHhcCCCCEEEEcCCCCCCCCCEEEe
Confidence 3333333333 4444444322 2333345555666788888877654 445677888899988776543222222 233
Q ss_pred hHHHHHHHhHHHHHHHHHhcCCc
Q 036925 194 PTFHKMGREKAILIDSVLPFGFE 216 (639)
Q Consensus 194 ~~f~~m~~~K~~vl~~lL~~Gy~ 216 (639)
..+ +.+. .+...+++.|+.
T Consensus 99 d~~-~~g~---~~~~~l~~~g~~ 117 (267)
T cd06283 99 DNY-EAAK---EAVDHLIEKGYE 117 (267)
T ss_pred ccH-HHHH---HHHHHHHHcCCC
Confidence 333 3332 345566777864
No 46
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=34.17 E-value=33 Score=33.90 Aligned_cols=53 Identities=26% Similarity=0.380 Sum_probs=37.4
Q ss_pred EeCCCCCHHHHHHhhcc-cCCc---eEEEe--C-------CccccccCCCcHHHHHHHHHHhcccc
Q 036925 546 RFPRHSSEETFKTVFSS-FKDV---KVINF--S-------SMKNAFLNFTDKTREERFRRRVKRYV 598 (639)
Q Consensus 546 ~~~~~~~~~~l~~~l~~-~~~~---~vl~~--~-------~~~~~f~gf~d~~~~~~f~~~~~~~~ 598 (639)
.||+++|++++.+.+++ +.+. ...++ + ..-+++-.|.+......|.++++.++
T Consensus 14 ~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~ 79 (176)
T PF03467_consen 14 RLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHV 79 (176)
T ss_dssp EE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEE
T ss_pred CCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcE
Confidence 39999999999999988 7666 44442 1 11357778999999999999987643
No 47
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=30.94 E-value=5.1e+02 Score=25.90 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCH----HHHHHHHhCCCCeEecCCCCCc-CccCCCChHHHHHHHhHHHHHHHHHhcC
Q 036925 140 DFILNWVQRLTDLGLSNILVGALDT----KLVKALYWKGVPVFDMGSHMST-MDVGWGSPTFHKMGREKAILIDSVLPFG 214 (639)
Q Consensus 140 df~~NWl~sl~r~Gv~n~lVvAlD~----~t~~~c~~~Gvpcf~~~s~~~~-~~~~~Gs~~f~~m~~~K~~vl~~lL~~G 214 (639)
+--..-++.+...+++-+++...|. +.++.+.+ |+|++........ ....+-..+..+.+..=...+.+.+..|
T Consensus 42 ~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~~~g 120 (271)
T cd06314 42 NAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAAA-GIKLITTDSDAPDSGRYVYIGTDNYAAGRTAGEIMKKALPGG 120 (271)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHHhc-CCCEEEecCCCCccceeEEEccChHHHHHHHHHHHHHHcCCC
Confidence 3345566667777899888888774 44555656 9998887643322 1122222344455555455555545557
Q ss_pred CceE
Q 036925 215 FELL 218 (639)
Q Consensus 215 y~VL 218 (639)
.+++
T Consensus 121 ~~~~ 124 (271)
T cd06314 121 GKVA 124 (271)
T ss_pred CEEE
Confidence 7643
No 48
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=30.25 E-value=2.6e+02 Score=25.44 Aligned_cols=64 Identities=22% Similarity=0.188 Sum_probs=44.3
Q ss_pred HHHHHHhc--CCCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe---CHHHHHHHHhCCCCeEec
Q 036925 117 KELVEQRV--QDNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL---DTKLVKALYWKGVPVFDM 180 (639)
Q Consensus 117 r~L~~~~A--~d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl---D~~t~~~c~~~Gvpcf~~ 180 (639)
+++++.+. .-..|.++..+..+...+..++..+++.|.+++.|++- =++..+.+.+.|+..+..
T Consensus 40 e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~ 108 (122)
T cd02071 40 EEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEIFG 108 (122)
T ss_pred HHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEC
Confidence 35555543 33678888888899999999999999998755332222 344567788899865543
No 49
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.14 E-value=4.9e+02 Score=25.89 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEe--CHH-----HHHHHHhCCCCeEecCCCCCc-CccCCCChHHHHHHHhHHHHHHHHH
Q 036925 140 DFILNWVQRLTDLGLSNILVGAL--DTK-----LVKALYWKGVPVFDMGSHMST-MDVGWGSPTFHKMGREKAILIDSVL 211 (639)
Q Consensus 140 df~~NWl~sl~r~Gv~n~lVvAl--D~~-----t~~~c~~~Gvpcf~~~s~~~~-~~~~~Gs~~f~~m~~~K~~vl~~lL 211 (639)
+--...++.+...+++-++|... +.. .++.+.+.|+|++........ ....+-..++.+.+.. +...++
T Consensus 42 ~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~~~~~~~~~~~~V~~d~~~~~~~---~~~~l~ 118 (273)
T cd06292 42 VSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNGRAPPPLKVPHVSTDDALAMRL---AVRHLV 118 (273)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEcCCCCCCCCCCEEEECcHHHHHH---HHHHHH
Confidence 33445667777778888777642 333 367788899998887653322 2222222334444433 455666
Q ss_pred hcCCc
Q 036925 212 PFGFE 216 (639)
Q Consensus 212 ~~Gy~ 216 (639)
+.|+.
T Consensus 119 ~~g~~ 123 (273)
T cd06292 119 ALGHR 123 (273)
T ss_pred HCCCc
Confidence 78886
No 50
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=27.61 E-value=2.9e+02 Score=28.72 Aligned_cols=95 Identities=11% Similarity=0.150 Sum_probs=57.2
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeCH--HHHHHHHhCCCCeEecCCCCCcC-ccCCCChHHHHHHHh
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALDT--KLVKALYWKGVPVFDMGSHMSTM-DVGWGSPTFHKMGRE 202 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD~--~t~~~c~~~Gvpcf~~~s~~~~~-~~~~Gs~~f~~m~~~ 202 (639)
+-.+++..++.. .+.- +.++.+...+++-+|+..... +.+..+.+.|+|++......... ...+-.-+..+.+.
T Consensus 31 Gy~l~l~~t~~~-~~~e-~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~a~~- 107 (279)
T PF00532_consen 31 GYQLLLCNTGDD-EEKE-EYIELLLQRRVDGIILASSENDDEELRRLIKSGIPVVLIDRYIDNPEGVPSVYIDNYEAGY- 107 (279)
T ss_dssp TCEEEEEEETTT-HHHH-HHHHHHHHTTSSEEEEESSSCTCHHHHHHHHTTSEEEEESS-SCTTCTSCEEEEEHHHHHH-
T ss_pred CCEEEEecCCCc-hHHH-HHHHHHHhcCCCEEEEecccCChHHHHHHHHcCCCEEEEEeccCCcccCCEEEEcchHHHH-
Confidence 345555555544 3444 999999999999988887643 35566666699988876542222 22211122223322
Q ss_pred HHHHHHHHHhcCCceEeeecc-eeEecCCc
Q 036925 203 KAILIDSVLPFGFELLMCDTD-MVWLKNPL 231 (639)
Q Consensus 203 K~~vl~~lL~~Gy~VL~sDvD-VVWlrDPl 231 (639)
.+.+.|++.|+. . +.++..|.
T Consensus 108 --~a~~~Li~~Gh~------~~I~~i~~~~ 129 (279)
T PF00532_consen 108 --EATEYLIKKGHR------RPIAFIGGPE 129 (279)
T ss_dssp --HHHHHHHHTTCC------STEEEEEEST
T ss_pred --HHHHHHHhcccC------CeEEEEecCc
Confidence 568889999996 3 45555553
No 51
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=27.43 E-value=6e+02 Score=26.34 Aligned_cols=86 Identities=14% Similarity=0.157 Sum_probs=48.8
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe---CHHHHHHHHhCCCCeEecCCCCCcCccC-CCChHHHHHHH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL---DTKLVKALYWKGVPVFDMGSHMSTMDVG-WGSPTFHKMGR 201 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl---D~~t~~~c~~~Gvpcf~~~s~~~~~~~~-~Gs~~f~~m~~ 201 (639)
+-.+++..++.. .+-....+..+...+++-+++... +.+.++.+.+.|+|++............ .+...+...
T Consensus 90 gy~~~i~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~dn~~~~-- 166 (327)
T TIGR02417 90 GYQLLIACSDDN-PDQEKVVIENLLARQVDALIVASCMPPEDAYYQKLQNEGLPVVALDRSLDDEHFCSVISDDVDAA-- 166 (327)
T ss_pred CCEEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHHHhcCCCEEEEccccCCCCCCEEEeCcHHHH--
Confidence 334555444322 233345566677778888777654 3466777888899988775432221111 233333322
Q ss_pred hHHHHHHHHHhcCCc
Q 036925 202 EKAILIDSVLPFGFE 216 (639)
Q Consensus 202 ~K~~vl~~lL~~Gy~ 216 (639)
-.++..+++.|+.
T Consensus 167 --~~~~~~L~~~G~~ 179 (327)
T TIGR02417 167 --AELIERLLSQHAD 179 (327)
T ss_pred --HHHHHHHHHCCCC
Confidence 1356778889985
No 52
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=26.58 E-value=6.2e+02 Score=26.41 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=29.9
Q ss_pred HHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHh-CCCCeEecCC
Q 036925 142 ILNWVQRLTDLGLSNILVGAL--DTKLVKALYW-KGVPVFDMGS 182 (639)
Q Consensus 142 ~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~-~Gvpcf~~~s 182 (639)
..+.+..+...+++-+++.+. +++..+.+.+ .|+|++....
T Consensus 104 ~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~iPvV~~d~ 147 (341)
T PRK10703 104 QRAYLSMLAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDW 147 (341)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHhcCCCCEEEEec
Confidence 356667777778888877664 5667788877 7999987654
No 53
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=25.49 E-value=5.3e+02 Score=25.52 Aligned_cols=84 Identities=12% Similarity=0.182 Sum_probs=48.2
Q ss_pred CeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeCHHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhHHHH
Q 036925 127 NIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALDTKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKAIL 206 (639)
Q Consensus 127 ~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~v 206 (639)
-.+++..++.. .+--..-++.+...+++-+++...|... +.+.+.|+|++....... ....+-..++...+. .+
T Consensus 30 ~~~~~~~~~~~-~~~~~~~i~~~~~~~~dgiii~~~~~~~-~~~~~~gipvv~~~~~~~-~~~~~V~~d~~~~g~---~~ 103 (265)
T cd06291 30 YKLILCNSDND-PEKEREYLEMLRQNQVDGIIAGTHNLGI-EEYENIDLPIVSFDRYLS-ENIPIVSSDNYEGGR---LA 103 (265)
T ss_pred CeEEEecCCcc-HHHHHHHHHHHHHcCCCEEEEecCCcCH-HHHhcCCCCEEEEeCCCC-CCCCeEeechHHHHH---HH
Confidence 34555544432 2333455666777788888888777553 466778999888765432 222332223334443 34
Q ss_pred HHHHHhcCCc
Q 036925 207 IDSVLPFGFE 216 (639)
Q Consensus 207 l~~lL~~Gy~ 216 (639)
...+++.|+.
T Consensus 104 ~~~l~~~g~~ 113 (265)
T cd06291 104 AEELIERGCK 113 (265)
T ss_pred HHHHHHcCCc
Confidence 5566677875
No 54
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=25.34 E-value=5.5e+02 Score=25.47 Aligned_cols=86 Identities=12% Similarity=0.014 Sum_probs=47.6
Q ss_pred CeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC--HHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhHH
Q 036925 127 NIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD--TKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKA 204 (639)
Q Consensus 127 ~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD--~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~ 204 (639)
-.+++..++.. .+-...-++.+...+++-+++.+.+ ...++.+.+.|+|++............+-..++.+.+..
T Consensus 30 ~~~~~~~~~~~-~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~~~~V~~d~~~~g~~-- 106 (264)
T cd06274 30 YQLLIACSDDD-PETERETVETLIARQVDALIVAGSLPPDDPYYLCQKAGLPVVALDRPGDPSRFPSVVSDNRDGAAE-- 106 (264)
T ss_pred CEEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEcCCCCchHHHHHHHhcCCCEEEecCccCCCCCCEEEEccHHHHHH--
Confidence 34555544332 2333456666777789888888764 333677888999988775533221112111233333332
Q ss_pred HHHHHHHhcCCc
Q 036925 205 ILIDSVLPFGFE 216 (639)
Q Consensus 205 ~vl~~lL~~Gy~ 216 (639)
+...+++.|+.
T Consensus 107 -~~~~l~~~g~~ 117 (264)
T cd06274 107 -LTRELLAAPPE 117 (264)
T ss_pred -HHHHHHHCCCC
Confidence 24556667874
No 55
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=24.81 E-value=5.1e+02 Score=26.84 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=46.4
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHhCCCCeEecCCCCCcCccC-CCChHHHHHHHh
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL--DTKLVKALYWKGVPVFDMGSHMSTMDVG-WGSPTFHKMGRE 202 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~~Gvpcf~~~s~~~~~~~~-~Gs~~f~~m~~~ 202 (639)
+-.+++...+.. .+-..+-++.+...+++-+|+... ++...+.+.+.|+|++............ -+...+ ..+.
T Consensus 89 g~~~~i~~~~~~-~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~-~~~~- 165 (329)
T TIGR01481 89 KYNIILSNSDED-PEKEVQVLNTLLSKQVDGIIFMGGTITEKLREEFSRSPVPVVLAGTVDKENELPSVNIDYK-QATK- 165 (329)
T ss_pred CCEEEEEeCCCC-HHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHhcCCCEEEEecCCCCCCCCEEEECcH-HHHH-
Confidence 334555444332 233345566677778888777643 5566677888899987664322111111 122233 2222
Q ss_pred HHHHHHHHHhcCCc
Q 036925 203 KAILIDSVLPFGFE 216 (639)
Q Consensus 203 K~~vl~~lL~~Gy~ 216 (639)
.++..+++.|+.
T Consensus 166 --~a~~~L~~~G~~ 177 (329)
T TIGR01481 166 --EAVGELIAKGHK 177 (329)
T ss_pred --HHHHHHHHCCCC
Confidence 245567788875
No 56
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=24.75 E-value=9.8e+02 Score=26.49 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=28.6
Q ss_pred hCC-CCeEecCCCCCcCccCCCChHHHHHHHhHHHHHHHHHhcCCceEeeecceeEecCCc
Q 036925 172 WKG-VPVFDMGSHMSTMDVGWGSPTFHKMGREKAILIDSVLPFGFELLMCDTDMVWLKNPL 231 (639)
Q Consensus 172 ~~G-vpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~vl~~lL~~Gy~VL~sDvDVVWlrDPl 231 (639)
+.| +|++.-....+.....+|+.+.. ..++...++...=++++|+|=|+-.||.
T Consensus 126 ~~g~IPIinenD~v~~~el~~GdnD~l------Aa~vA~~l~Ad~LiilTDVdGvy~~dP~ 180 (368)
T PRK13402 126 ERGILPIINENDAVTTDRLKVGDNDNL------SAMVAALADADTLIILSDIDGLYDQNPR 180 (368)
T ss_pred HCCcEEEEeCCCcEeecccccCChHHH------HHHHHHHhCCCEEEEEecCCeEEeCCCC
Confidence 344 36665322222233445554432 2234445556666777888888877774
No 57
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=24.73 E-value=6.1e+02 Score=28.19 Aligned_cols=88 Identities=19% Similarity=0.337 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCC--eEEEEEeCH----------HHHHHHHhCCC-CeEecCCCCCcCccCCCChHHHHHHHhHHH
Q 036925 139 MDFILNWVQRLTDLGLS--NILVGALDT----------KLVKALYWKGV-PVFDMGSHMSTMDVGWGSPTFHKMGREKAI 205 (639)
Q Consensus 139 ~df~~NWl~sl~r~Gv~--n~lVvAlD~----------~t~~~c~~~Gv-pcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~ 205 (639)
.-++.-|-..+.+.|+. .+|+-.-|- .|.+.|.++|+ |.+.-..........+|+.+.. -.
T Consensus 83 ~~Lm~~y~~~f~~~g~~v~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~L------sA 156 (369)
T COG0263 83 VRLMQLYEELFARYGIKVGQILLTRDDFSDRRRYLNARNTLSALLELGVVPIINENDTVATEEIKFGDNDTL------SA 156 (369)
T ss_pred HHHHHHHHHHHHhcCCeeeEEEeehhhhhhHHHHHHHHHHHHHHHHCCceeeecCCCceeeeeeeecCCchH------HH
Confidence 46778888889999863 455544442 24455556674 7777655455566778887743 34
Q ss_pred HHHHHHhcCCceEeeecceeEecCCcc
Q 036925 206 LIDSVLPFGFELLMCDTDMVWLKNPLP 232 (639)
Q Consensus 206 vl~~lL~~Gy~VL~sDvDVVWlrDPlp 232 (639)
++..+.++..=||+||+|=.+-.||..
T Consensus 157 ~VA~lv~ADlLvlLsDiDGLyd~nPr~ 183 (369)
T COG0263 157 LVAILVGADLLVLLSDIDGLYDANPRT 183 (369)
T ss_pred HHHHHhCCCEEEEEEccCcccCCCCCC
Confidence 456677888889999999999999953
No 58
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.44 E-value=5.6e+02 Score=25.22 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCCeEEEEEeCH---HHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhHHHHHHHHHhcCCc
Q 036925 142 ILNWVQRLTDLGLSNILVGALDT---KLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKAILIDSVLPFGFE 216 (639)
Q Consensus 142 ~~NWl~sl~r~Gv~n~lVvAlD~---~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~vl~~lL~~Gy~ 216 (639)
-..-++.+...+++-+++.+.+. +..+.+.+.|+|++............+-..++.+.+.. +...+++.|+.
T Consensus 44 ~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~~---~~~~l~~~g~~ 118 (268)
T cd06289 44 QEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESGIPVVLVAREVAGAPFDYVGPDNAAGARL---ATEHLISLGHR 118 (268)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhcCCCEEEEeccCCCCCCCEEeecchHHHHH---HHHHHHHCCCC
Confidence 34455666677888888877653 34566778899987765432211222212223333222 34556677864
No 59
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=23.99 E-value=6.8e+02 Score=24.71 Aligned_cols=88 Identities=13% Similarity=0.105 Sum_probs=51.3
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC---HHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHh
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD---TKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGRE 202 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD---~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~ 202 (639)
+-.+++...+..........++.+...+++-+++...+ .+..+.+.+.|+|++............+-.-++.+.+..
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i~~~~~~~~~~~V~~d~~~~g~~ 108 (270)
T cd01545 29 GYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVPYVRIAPGTPDPDSPCVRIDDRAAARE 108 (270)
T ss_pred CCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhcCCCEEEEecCCCCCCCCeEEeccHHHHHH
Confidence 44566665665444455666777777788887776543 345677788999998775433221222212344455443
Q ss_pred HHHHHHHHHhcCCc
Q 036925 203 KAILIDSVLPFGFE 216 (639)
Q Consensus 203 K~~vl~~lL~~Gy~ 216 (639)
..+.+++.|+.
T Consensus 109 ---a~~~l~~~g~~ 119 (270)
T cd01545 109 ---MTRHLIDLGHR 119 (270)
T ss_pred ---HHHHHHHCCCc
Confidence 44556667875
No 60
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=23.66 E-value=7.6e+02 Score=25.52 Aligned_cols=70 Identities=16% Similarity=0.281 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCCeEEEEEe---CHHHHHHHHhCCCCeEecCCCCCcCcc-CCCChHHHHHHHhHHHHHHHHHhcCCc
Q 036925 143 LNWVQRLTDLGLSNILVGAL---DTKLVKALYWKGVPVFDMGSHMSTMDV-GWGSPTFHKMGREKAILIDSVLPFGFE 216 (639)
Q Consensus 143 ~NWl~sl~r~Gv~n~lVvAl---D~~t~~~c~~~Gvpcf~~~s~~~~~~~-~~Gs~~f~~m~~~K~~vl~~lL~~Gy~ 216 (639)
.+-++.+...+++-+|+... +.+.++.+.+.|+|++........... ...+..+.. +. .+...+++.|+.
T Consensus 107 ~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~v~~~~~~~~~~~V~~d~~~~-~~---~a~~~L~~~G~r 180 (328)
T PRK11303 107 MRCAEHLLQRQVDALIVSTSLPPEHPFYQRLQNDGLPIIALDRALDREHFTSVVSDDQDD-AE---MLAESLLKFPAE 180 (328)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCChHHHHHHHhcCCCEEEECCCCCCCCCCEEEeCCHHH-HH---HHHHHHHHCCCC
Confidence 34566666778887777643 355677777889998877543222111 122333332 22 256777888975
No 61
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=23.37 E-value=4.7e+02 Score=23.28 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=32.6
Q ss_pred EEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeCHHHHHHHHhCCCCeEecC
Q 036925 131 MTFGNYAFMDFILNWVQRLTDLGLSNILVGALDTKLVKALYWKGVPVFDMG 181 (639)
Q Consensus 131 VT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD~~t~~~c~~~Gvpcf~~~ 181 (639)
+-++|.. ..+..+|+..+++.|.+ +.|++++.+.-+.....|+..+..+
T Consensus 3 l~i~~~~-~~~~~~~~~~L~~~g~~-V~ii~~~~~~~~~~~~~~i~~~~~~ 51 (139)
T PF13477_consen 3 LLIGNTP-STFIYNLAKELKKRGYD-VHIITPRNDYEKYEIIEGIKVIRLP 51 (139)
T ss_pred EEEecCc-HHHHHHHHHHHHHCCCE-EEEEEcCCCchhhhHhCCeEEEEec
Confidence 3344433 34688999999999986 5666776665444456777766664
No 62
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=23.02 E-value=6.8e+02 Score=24.92 Aligned_cols=74 Identities=11% Similarity=0.155 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeC-------HHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhHHHHHHHHHh
Q 036925 140 DFILNWVQRLTDLGLSNILVGALD-------TKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKAILIDSVLP 212 (639)
Q Consensus 140 df~~NWl~sl~r~Gv~n~lVvAlD-------~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~vl~~lL~ 212 (639)
+--..-++.+...+++-+++...+ ...++.+.+.|+|++............+-..++.+.+.. +...+++
T Consensus 42 ~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~~~~V~~D~~~~g~~---~~~~l~~ 118 (273)
T cd01541 42 ERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFINASYEELNFPSLVLDDEKGGYK---ATEYLIE 118 (273)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHHHCCCCEEEEecCCCCCCCCEEEECcHHHHHH---HHHHHHH
Confidence 334556777777888888776543 355677888899988765432111222222233333332 2445567
Q ss_pred cCCc
Q 036925 213 FGFE 216 (639)
Q Consensus 213 ~Gy~ 216 (639)
.|+.
T Consensus 119 ~G~~ 122 (273)
T cd01541 119 LGHR 122 (273)
T ss_pred cCCc
Confidence 7875
No 63
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=22.77 E-value=1.2e+02 Score=24.03 Aligned_cols=49 Identities=22% Similarity=0.463 Sum_probs=34.2
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-C----cc-ccccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-S----MK-NAFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-~----~~-~~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.+..+.=+++. + .. -+|-.|.+.+.+.++-+...
T Consensus 6 lp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~ 60 (70)
T PF14259_consen 6 LPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLN 60 (70)
T ss_dssp STTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCC
Confidence 89999999999999998654333332 2 12 37889999998887766554
No 64
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.61 E-value=7.1e+02 Score=24.72 Aligned_cols=95 Identities=9% Similarity=0.000 Sum_probs=51.7
Q ss_pred HHHHHhcCCC-eEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHhCCCCeEecCCCCCcCccCCCCh
Q 036925 118 ELVEQRVQDN-IIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL--DTKLVKALYWKGVPVFDMGSHMSTMDVGWGSP 194 (639)
Q Consensus 118 ~L~~~~A~d~-tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~ 194 (639)
.+.+...+.+ .|++...+. -.+--..-++.+...+++-+++... +.+....+.+.|+|++............+=..
T Consensus 20 gi~~~~~~~gy~v~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~pvV~i~~~~~~~~~~~V~~ 98 (269)
T cd06293 20 AVEEEADARGLSLVLCATRN-RPERELTYLRWLDTNHVDGLIFVTNRPDDGALAKLINSYGNIVLVDEDVPGAKVPKVFC 98 (269)
T ss_pred HHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHhcCCCEEEECCCCCCCCCCEEEE
Confidence 3333333444 455554443 2233345667777888988877754 45556667778999888765332212222122
Q ss_pred HHHHHHHhHHHHHHHHHhcCCc
Q 036925 195 TFHKMGREKAILIDSVLPFGFE 216 (639)
Q Consensus 195 ~f~~m~~~K~~vl~~lL~~Gy~ 216 (639)
++...+.. ....+++.|+.
T Consensus 99 d~~~~~~~---~~~~L~~~G~~ 117 (269)
T cd06293 99 DNEQGGRL---ATRHLARAGHR 117 (269)
T ss_pred CCHHHHHH---HHHHHHHCCCc
Confidence 33333332 45566778875
No 65
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=22.46 E-value=3.1e+02 Score=29.57 Aligned_cols=56 Identities=20% Similarity=0.117 Sum_probs=35.7
Q ss_pred CCCeEEEEEcchhhH-----HHHHHHHHHHHHcCCCeEEEEEeC--------HHHHHHHHhCCCCeEecC
Q 036925 125 QDNIIIMTFGNYAFM-----DFILNWVQRLTDLGLSNILVGALD--------TKLVKALYWKGVPVFDMG 181 (639)
Q Consensus 125 ~d~tVIVT~~N~ay~-----df~~NWl~sl~r~Gv~n~lVvAlD--------~~t~~~c~~~Gvpcf~~~ 181 (639)
.++.+|+|.+|++.+ .-++..+....+.|.+ +-|++.+ ..+.+.|.+.|++|....
T Consensus 117 ~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~g~~-~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~ 185 (303)
T TIGR00524 117 KDGDTVLTHCNAGALATSDYGTALGVIRSAWEDGKR-IRVIACETRPRNQGSRLTAWELMQDGIDVTLIT 185 (303)
T ss_pred cCCCEEEEecCCccccccCcchHHHHHHHHHHcCCc-eEEEECCCCCccchHHHHHHHHHHCCCCEEEEC
Confidence 578899999998544 4566677777777743 4444443 234556666677766553
No 66
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=22.44 E-value=5.6e+02 Score=28.28 Aligned_cols=85 Identities=14% Similarity=0.319 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeCH------------HHHHHHHhCC-CCeEecCCCCCcCccCCCChHHHHHHHhHHHHH
Q 036925 141 FILNWVQRLTDLGLSNILVGALDT------------KLVKALYWKG-VPVFDMGSHMSTMDVGWGSPTFHKMGREKAILI 207 (639)
Q Consensus 141 f~~NWl~sl~r~Gv~n~lVvAlD~------------~t~~~c~~~G-vpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~vl 207 (639)
+...|...+++.|++..=+...+. .+.+.+-+.| +|++............+|+.+.. ..++
T Consensus 87 L~~~~~~~l~~~gi~~~qil~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~------Aa~l 160 (372)
T PRK05429 87 LMQAYEELFARYGITVAQILLTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTL------SALV 160 (372)
T ss_pred HHHHHHHHHHHCCCCEEEEEeehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHH------HHHH
Confidence 334566667788876533323331 3333344455 47775322222223345655533 2234
Q ss_pred HHHHhcCCceEeeecceeEecCCc
Q 036925 208 DSVLPFGFELLMCDTDMVWLKNPL 231 (639)
Q Consensus 208 ~~lL~~Gy~VL~sDvDVVWlrDPl 231 (639)
-..|....=++++|+|=|+-.||-
T Consensus 161 A~~l~Ad~LiilTDVdGVy~~dP~ 184 (372)
T PRK05429 161 ANLVEADLLILLTDVDGLYTADPR 184 (372)
T ss_pred HHHcCCCEEEEecCCCeeEcCCCC
Confidence 455566666889999999988884
No 67
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=22.13 E-value=7.9e+02 Score=24.44 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCH----HHHHHHHhCCCCeEecCCC
Q 036925 140 DFILNWVQRLTDLGLSNILVGALDT----KLVKALYWKGVPVFDMGSH 183 (639)
Q Consensus 140 df~~NWl~sl~r~Gv~n~lVvAlD~----~t~~~c~~~Gvpcf~~~s~ 183 (639)
+-..+-+..+...+++-+++.+.|. +.++.+.+.|+|++.....
T Consensus 47 ~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~~~ 94 (272)
T cd06300 47 AQQIADIRNLIAQGVDAIIINPASPTALNPVIEEACEAGIPVVSFDGT 94 (272)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEecC
Confidence 3344666666667888888888773 3567778889998876543
No 68
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=22.12 E-value=8.2e+02 Score=24.63 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeCH----HHHHHHHhCCCCeEecCCC
Q 036925 140 DFILNWVQRLTDLGLSNILVGALDT----KLVKALYWKGVPVFDMGSH 183 (639)
Q Consensus 140 df~~NWl~sl~r~Gv~n~lVvAlD~----~t~~~c~~~Gvpcf~~~s~ 183 (639)
+-....+..+...+++-+++.+.|. +.++.+.+.|+|++.....
T Consensus 42 ~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~ 89 (272)
T cd06313 42 VKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGTL 89 (272)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCCC
Confidence 3344566667778888888877763 3456777889999887654
No 69
>PTZ00489 glutamate 5-kinase; Provisional
Probab=20.89 E-value=5.5e+02 Score=27.04 Aligned_cols=85 Identities=16% Similarity=0.305 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcCCCe--EEEEEeCH----------HHHHHHHhCCC-CeEecCCCCCcCccCCCChHHHHHHHhHHHHH
Q 036925 141 FILNWVQRLTDLGLSN--ILVGALDT----------KLVKALYWKGV-PVFDMGSHMSTMDVGWGSPTFHKMGREKAILI 207 (639)
Q Consensus 141 f~~NWl~sl~r~Gv~n--~lVvAlD~----------~t~~~c~~~Gv-pcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~vl 207 (639)
+..-|...+.+.|+.+ +++.+.|- ++.+.+-+.|+ |++.-....+..+..+|+.+.. ..++
T Consensus 83 L~~~y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~l------Aa~l 156 (264)
T PTZ00489 83 LMHMYYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRL------SALV 156 (264)
T ss_pred HHHHHHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHH------HHHH
Confidence 3334666677778755 44444443 33444556675 7765432223333456665432 2234
Q ss_pred HHHHhcCCceEeeecceeEecCCc
Q 036925 208 DSVLPFGFELLMCDTDMVWLKNPL 231 (639)
Q Consensus 208 ~~lL~~Gy~VL~sDvDVVWlrDPl 231 (639)
...++.-.=++++|+|=|+-+||-
T Consensus 157 A~~l~Ad~LiilTDVdGVy~~dP~ 180 (264)
T PTZ00489 157 AHHFKADLLVILSDIDGYYTENPR 180 (264)
T ss_pred HHHhCCCEEEEeeccCeeEcCCCC
Confidence 455666667999999999999984
No 70
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=20.03 E-value=8.6e+02 Score=24.09 Aligned_cols=87 Identities=10% Similarity=0.099 Sum_probs=47.4
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC--HHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD--TKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREK 203 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD--~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K 203 (639)
+-.+++..++.. .+--..-+..+...+++-++|.+.+ ....+.+.+.|+|++............+-..++.+.+.
T Consensus 29 g~~~~~~~~~~~-~~~~~~~i~~~~~~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~~~~v~~d~~~~~~-- 105 (268)
T cd06270 29 GKHLIITAGHHS-AEKEREAIEFLLERRCDALILHSKALSDDELIELAAQVPPLVLINRHIPGLADRCIWLDNEQGGY-- 105 (268)
T ss_pred CCEEEEEeCCCc-hHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHhhCCCCEEEEeccCCCCCCCeEEECcHHHHH--
Confidence 334555444432 2223345566666788888887754 33468888899998776543321111111223344433
Q ss_pred HHHHHHHHhcCCc
Q 036925 204 AILIDSVLPFGFE 216 (639)
Q Consensus 204 ~~vl~~lL~~Gy~ 216 (639)
.+++.+++.|+.
T Consensus 106 -~~~~~l~~~g~~ 117 (268)
T cd06270 106 -LATEHLIELGHR 117 (268)
T ss_pred -HHHHHHHHCCCc
Confidence 245566677875
Done!