Query 036925
Match_columns 639
No_of_seqs 193 out of 398
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 11:04:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ll2_A Glycogenin-1; protein-s 97.9 9.6E-05 3.3E-09 78.0 14.3 158 130-310 7-173 (333)
2 3u2u_A Glycogenin-1, GN-1, GN1 97.7 0.00039 1.3E-08 71.2 14.2 158 129-310 6-174 (263)
3 3tzt_A Glycosyl transferase fa 97.6 0.00085 2.9E-08 68.8 14.8 177 130-309 8-202 (276)
4 1g9r_A Glycosyl transferase; a 97.3 0.002 6.7E-08 67.0 13.6 177 130-310 3-198 (311)
5 4ap5_A GDP-fucose protein O-fu 95.0 0.029 1E-06 60.4 6.8 73 394-491 21-97 (408)
6 3zy2_A Putative GDP-fucose pro 89.6 0.19 6.4E-06 53.2 3.4 26 426-451 23-48 (362)
7 1uw4_A UPF3X; nonsense mediate 77.7 3.3 0.00011 35.4 5.4 52 546-597 8-68 (91)
8 2l08_A Regulator of nonsense t 60.1 5.5 0.00019 34.5 3.0 50 547-596 17-75 (97)
9 3e61_A Putative transcriptiona 58.6 50 0.0017 31.7 10.2 85 126-216 38-123 (277)
10 1why_A Hypothetical protein ri 57.1 14 0.00048 30.4 5.1 50 547-596 25-75 (97)
11 2cpj_A Non-POU domain-containi 55.8 14 0.00048 30.5 4.8 50 547-596 23-73 (99)
12 1wg1_A KIAA1579 protein, homol 52.9 16 0.00054 29.6 4.6 48 547-595 13-61 (88)
13 3jy6_A Transcriptional regulat 51.8 94 0.0032 29.8 10.9 87 126-216 37-124 (276)
14 3o74_A Fructose transport syst 50.6 62 0.0021 30.8 9.3 87 126-216 32-121 (272)
15 2cq2_A Hypothetical protein LO 50.1 24 0.00081 31.1 5.5 72 547-622 35-107 (114)
16 2la4_A Nuclear and cytoplasmic 47.7 23 0.00079 29.2 4.9 49 547-595 35-84 (101)
17 3r27_A HnRNP L, heterogeneous 46.9 21 0.00073 30.7 4.6 50 547-596 29-79 (100)
18 2dnq_A RNA-binding protein 4B; 45.8 23 0.0008 28.5 4.6 48 547-596 16-64 (90)
19 2cqh_A IGF-II mRNA-binding pro 44.9 15 0.00051 29.9 3.2 49 547-595 16-65 (93)
20 1whx_A Hypothetical protein ri 44.3 27 0.00092 29.8 4.9 49 547-595 18-67 (111)
21 3tb6_A Arabinose metabolism tr 44.2 99 0.0034 29.7 9.7 87 126-216 45-138 (298)
22 2jvo_A Nucleolar protein 3; nu 43.2 29 0.00098 29.5 4.9 48 547-596 39-87 (108)
23 2ytc_A PRE-mRNA-splicing facto 42.9 22 0.00075 28.2 3.9 48 547-594 20-68 (85)
24 2cpd_A Apobec-1 stimulating pr 42.3 23 0.00079 29.1 4.1 50 547-596 23-73 (99)
25 1wex_A Hypothetical protein (r 41.5 28 0.00096 29.7 4.5 48 547-594 23-71 (104)
26 1x4a_A Splicing factor, argini 41.0 35 0.0012 28.5 5.1 50 547-596 30-83 (109)
27 2ad9_A Polypyrimidine tract-bi 40.9 31 0.0011 30.4 4.9 49 547-595 39-88 (119)
28 2dgu_A Heterogeneous nuclear r 40.8 24 0.00082 29.3 4.0 48 547-596 19-67 (103)
29 1x4g_A Nucleolysin TIAR; struc 40.7 24 0.00083 29.6 4.0 50 547-596 33-83 (109)
30 2dgv_A HnRNP M, heterogeneous 39.2 30 0.001 27.8 4.2 50 547-596 16-70 (92)
31 2xnq_A Nuclear polyadenylated 38.9 39 0.0013 27.9 5.0 48 547-596 30-79 (97)
32 2fc9_A NCL protein; structure 38.9 20 0.0007 29.5 3.2 49 547-595 23-74 (101)
33 2d9p_A Polyadenylate-binding p 38.6 34 0.0012 28.2 4.6 50 547-596 23-77 (103)
34 1wf1_A RNA-binding protein RAL 38.0 36 0.0012 28.6 4.7 48 547-596 35-84 (110)
35 2cqc_A Arginine/serine-rich sp 37.7 36 0.0012 27.4 4.5 49 547-595 23-78 (95)
36 3uug_A Multiple sugar-binding 37.6 1.9E+02 0.0067 28.2 10.9 90 126-216 33-132 (330)
37 2e5h_A Zinc finger CCHC-type a 37.4 40 0.0014 27.2 4.7 49 547-595 24-79 (94)
38 2cq1_A PTB-like protein L; RRM 37.3 35 0.0012 28.9 4.5 48 547-594 23-71 (101)
39 2fc8_A NCL protein; structure 37.1 43 0.0015 27.4 5.0 50 547-596 23-76 (102)
40 2kvi_A Nuclear polyadenylated 36.8 37 0.0013 27.8 4.5 47 547-595 18-66 (96)
41 2fep_A Catabolite control prot 36.3 2.4E+02 0.0082 27.1 11.2 87 126-216 46-134 (289)
42 2cqb_A Peptidyl-prolyl CIS-tra 36.3 45 0.0015 27.3 4.9 49 547-595 20-75 (102)
43 3k4h_A Putative transcriptiona 36.3 1.4E+02 0.0049 28.5 9.4 74 140-216 56-132 (292)
44 2hvz_A Splicing factor, argini 36.3 34 0.0011 28.1 4.1 50 547-596 8-59 (101)
45 3egc_A Putative ribose operon 36.2 99 0.0034 29.8 8.3 87 126-216 38-126 (291)
46 2cph_A RNA binding motif prote 36.0 44 0.0015 27.6 4.9 48 547-594 23-78 (107)
47 2dgt_A RNA-binding protein 30; 35.8 40 0.0014 27.2 4.5 49 547-596 18-66 (92)
48 1fo8_A Alpha-1,3-mannosyl-glyc 35.5 1.3E+02 0.0045 31.3 9.4 106 128-236 5-122 (343)
49 2x1f_A MRNA 3'-END-processing 35.5 45 0.0015 27.1 4.8 49 547-595 10-65 (96)
50 1wf0_A TDP-43, TAR DNA-binding 35.5 38 0.0013 27.1 4.2 43 547-589 13-57 (88)
51 2cq3_A RNA-binding protein 9; 35.4 47 0.0016 27.3 5.0 49 547-595 23-76 (103)
52 1fjc_A Nucleolin RBD2, protein 34.6 23 0.00078 28.8 2.8 49 547-595 24-74 (96)
53 1p27_B RNA-binding protein 8A; 34.3 51 0.0017 27.2 5.0 49 547-595 31-86 (106)
54 2dnz_A Probable RNA-binding pr 34.2 51 0.0018 26.5 4.9 50 547-596 13-69 (95)
55 1x4e_A RNA binding motif, sing 34.1 57 0.0019 25.7 5.1 49 547-595 13-68 (85)
56 2cpz_A CUG triplet repeat RNA- 33.6 49 0.0017 27.9 4.8 50 547-596 33-89 (115)
57 1sjq_A Polypyrimidine tract-bi 33.3 35 0.0012 29.5 3.8 48 547-594 24-72 (105)
58 3hcw_A Maltose operon transcri 33.3 1.3E+02 0.0044 29.2 8.6 73 141-216 56-132 (295)
59 3huu_A Transcription regulator 33.2 1.3E+02 0.0044 29.3 8.6 87 126-216 57-145 (305)
60 2do4_A Squamous cell carcinoma 33.2 43 0.0015 27.4 4.3 49 547-595 25-79 (100)
61 4fxv_A ELAV-like protein 1; RN 33.1 44 0.0015 27.8 4.4 49 547-595 27-82 (99)
62 2wbr_A GW182, gawky, LD47780P; 32.8 32 0.0011 29.2 3.4 49 547-595 15-64 (89)
63 3l49_A ABC sugar (ribose) tran 32.4 3E+02 0.01 26.1 11.1 86 126-216 35-126 (291)
64 3ioh_A Histo-blood group ABO s 32.2 54 0.0018 33.8 5.6 116 96-229 31-163 (298)
65 2dnh_A Bruno-like 5, RNA bindi 32.1 48 0.0016 27.3 4.5 50 547-596 23-78 (105)
66 1x4d_A Matrin 3; structural ge 32.0 37 0.0013 29.0 3.7 49 547-595 23-73 (102)
67 3md1_A Nuclear and cytoplasmic 32.0 51 0.0017 25.7 4.4 49 547-595 9-64 (83)
68 3bs9_A Nucleolysin TIA-1 isofo 32.0 51 0.0018 26.0 4.5 49 547-595 14-69 (87)
69 3d8u_A PURR transcriptional re 31.9 2.1E+02 0.0071 27.0 9.7 87 126-216 33-121 (275)
70 4a8x_A RNA-binding protein wit 31.7 49 0.0017 26.1 4.3 49 547-595 12-68 (88)
71 2err_A Ataxin-2-binding protei 31.4 52 0.0018 27.7 4.6 49 547-595 37-90 (109)
72 2cpf_A RNA binding motif prote 31.2 41 0.0014 27.4 3.8 49 547-595 13-71 (98)
73 1x5u_A Splicing factor 3B subu 31.2 52 0.0018 27.1 4.5 49 547-595 23-78 (105)
74 2fy1_A RNA-binding motif prote 31.1 54 0.0019 28.0 4.8 49 547-595 15-69 (116)
75 2dnp_A RNA-binding protein 14; 31.1 49 0.0017 26.5 4.2 48 547-595 17-64 (90)
76 3brq_A HTH-type transcriptiona 30.7 3.5E+02 0.012 25.6 12.2 87 126-216 51-140 (296)
77 3lqv_A PRE-mRNA branch site pr 30.6 63 0.0022 27.1 5.1 50 547-596 16-69 (115)
78 2hhc_A NODZ, nodulation fucosy 30.2 32 0.0011 35.1 3.6 32 424-455 16-48 (330)
79 2dgs_A DAZ-associated protein 30.1 68 0.0023 26.1 5.0 46 547-592 18-70 (99)
80 3mdf_A Peptidyl-prolyl CIS-tra 29.7 61 0.0021 25.4 4.5 49 547-595 15-70 (85)
81 2ku7_A MLL1 PHD3-CYP33 RRM chi 29.6 52 0.0018 28.5 4.4 49 547-595 71-126 (140)
82 1x5s_A Cold-inducible RNA-bind 29.3 64 0.0022 26.4 4.8 50 547-596 20-76 (102)
83 1x4c_A Splicing factor, argini 29.0 52 0.0018 27.5 4.2 49 547-595 23-71 (108)
84 1nu4_A U1A RNA binding domain; 29.0 53 0.0018 26.5 4.2 50 547-596 16-73 (97)
85 2hzc_A Splicing factor U2AF 65 29.0 42 0.0014 26.5 3.4 45 547-591 14-70 (87)
86 2ywk_A Putative RNA-binding pr 28.9 54 0.0018 26.4 4.2 49 547-595 24-78 (95)
87 3p5t_L Cleavage and polyadenyl 28.6 1E+02 0.0034 24.7 5.8 50 547-596 9-67 (90)
88 1whv_A Poly(A)-specific ribonu 28.0 58 0.002 28.3 4.2 49 545-594 21-69 (100)
89 1iqt_A AUF1, heterogeneous nuc 27.8 34 0.0012 26.3 2.6 44 547-590 7-57 (75)
90 2dgp_A Bruno-like 4, RNA bindi 27.8 55 0.0019 27.0 4.1 50 547-596 21-77 (106)
91 1x4f_A Matrin 3; structural ge 27.6 53 0.0018 28.6 4.0 48 547-594 33-82 (112)
92 1x4h_A RNA-binding protein 28; 27.6 68 0.0023 26.6 4.7 49 547-595 23-78 (111)
93 2lxi_A RNA-binding protein 10; 27.4 29 0.00098 28.4 2.2 48 547-594 9-64 (91)
94 2j5v_A Glutamate 5-kinase; pro 27.1 5.3E+02 0.018 26.8 12.5 61 165-231 119-180 (367)
95 1whw_A Hypothetical protein ri 27.1 68 0.0023 26.0 4.5 49 547-595 16-71 (99)
96 2lkz_A RNA-binding protein 5; 26.7 25 0.00087 29.4 1.7 50 547-596 17-75 (95)
97 3dbi_A Sugar-binding transcrip 26.7 3.2E+02 0.011 26.9 10.4 86 126-216 93-182 (338)
98 2dnm_A SRP46 splicing factor; 26.5 1.3E+02 0.0045 24.5 6.3 50 547-596 21-77 (103)
99 3beg_B Splicing factor, argini 26.2 68 0.0023 27.3 4.5 49 547-595 24-72 (115)
100 3d2w_A TAR DNA-binding protein 26.2 62 0.0021 26.3 4.0 43 547-589 19-63 (89)
101 2cqi_A Nucleolysin TIAR; RNA r 26.2 59 0.002 26.7 4.0 49 547-595 23-76 (103)
102 2mss_A Protein (musashi1); RNA 26.1 53 0.0018 25.2 3.5 44 547-590 7-57 (75)
103 1uaw_A Mouse-musashi-1; RNP-ty 25.9 53 0.0018 25.2 3.4 48 547-594 8-62 (77)
104 3kke_A LACI family transcripti 25.8 1.6E+02 0.0054 28.7 7.8 85 126-216 45-132 (303)
105 3gv0_A Transcriptional regulat 25.8 2.4E+02 0.0082 27.0 9.1 68 146-216 59-128 (288)
106 2do0_A HnRNP M, heterogeneous 25.7 69 0.0023 26.8 4.4 49 547-595 23-77 (114)
107 1h2v_Z 20 kDa nuclear CAP bind 25.6 71 0.0024 28.5 4.7 49 547-595 47-102 (156)
108 2kxn_B Transformer-2 protein h 25.6 86 0.0029 27.4 5.1 49 547-595 54-109 (129)
109 2e5j_A Methenyltetrahydrofolat 25.6 57 0.002 26.6 3.7 49 547-595 27-77 (97)
110 3h5t_A Transcriptional regulat 25.2 1.2E+02 0.0042 30.5 7.0 93 121-216 96-190 (366)
111 3ex7_B RNA-binding protein 8A; 25.2 82 0.0028 26.8 4.9 49 547-595 30-85 (126)
112 1oo0_B CG8781-PA, drosophila Y 25.1 86 0.0029 26.0 4.9 49 547-595 34-89 (110)
113 2o20_A Catabolite control prot 24.9 2.9E+02 0.0098 27.2 9.6 87 126-216 93-181 (332)
114 1p1t_A Cleavage stimulation fa 24.9 69 0.0023 26.2 4.1 49 547-595 16-71 (104)
115 2dnl_A Cytoplasmic polyadenyla 24.5 82 0.0028 26.6 4.7 53 547-599 16-77 (114)
116 2cqd_A RNA-binding region cont 24.3 55 0.0019 27.6 3.5 49 547-595 25-80 (116)
117 2jrs_A RNA-binding protein 39; 24.3 74 0.0025 26.8 4.3 50 547-596 34-90 (108)
118 2div_A TRNA selenocysteine ass 24.2 67 0.0023 26.1 3.9 49 547-595 17-73 (99)
119 2e6i_A Tyrosine-protein kinase 24.0 78 0.0027 25.3 4.0 39 599-639 23-64 (64)
120 2cq0_A Eukaryotic translation 23.7 66 0.0023 26.4 3.8 49 547-595 23-78 (103)
121 3qk7_A Transcriptional regulat 23.6 1.5E+02 0.0051 28.8 7.0 86 126-216 40-127 (294)
122 3ulh_A THO complex subunit 4; 23.5 81 0.0028 25.9 4.4 49 547-595 37-91 (107)
123 1fxl_A Paraneoplastic encephal 23.4 74 0.0025 27.8 4.3 49 547-595 10-65 (167)
124 1x5t_A Splicing factor 3B subu 23.3 57 0.0019 26.3 3.3 49 547-595 13-69 (96)
125 1x5o_A RNA binding motif, sing 23.2 84 0.0029 26.2 4.5 50 547-596 33-88 (114)
126 1dbq_A Purine repressor; trans 23.0 4.5E+02 0.015 24.8 10.3 87 126-216 37-127 (289)
127 3s8s_A Histone-lysine N-methyl 22.9 99 0.0034 26.2 4.9 49 547-595 14-69 (110)
128 1x5p_A Negative elongation fac 22.9 83 0.0028 25.6 4.2 47 550-596 24-71 (97)
129 1fje_B Nucleolin RBD12, protei 22.8 74 0.0025 28.4 4.3 49 547-595 107-157 (175)
130 2dgo_A Cytotoxic granule-assoc 22.5 85 0.0029 26.3 4.4 49 547-595 23-78 (115)
131 2kt5_A RNA and export factor-b 22.5 81 0.0028 26.9 4.3 49 547-595 43-97 (124)
132 2cqg_A TDP-43, TAR DNA-binding 22.4 66 0.0023 26.4 3.6 46 547-592 23-75 (103)
133 2dhg_A TRNA selenocysteine ass 22.4 75 0.0026 26.0 3.9 50 547-596 17-73 (104)
134 2fvy_A D-galactose-binding per 22.3 4.9E+02 0.017 24.8 10.6 65 118-183 23-93 (309)
135 2e44_A Insulin-like growth fac 22.1 99 0.0034 24.8 4.6 49 547-595 23-75 (96)
136 3s7r_A Heterogeneous nuclear r 22.0 67 0.0023 25.4 3.4 45 547-591 19-70 (87)
137 3e3m_A Transcriptional regulat 21.9 4.7E+02 0.016 26.0 10.6 86 126-216 100-188 (355)
138 1b7f_A Protein (SXL-lethal pro 21.9 82 0.0028 27.6 4.3 49 547-595 11-66 (168)
139 2ek1_A RNA-binding protein 12; 21.7 59 0.002 26.2 3.0 49 547-595 23-78 (95)
140 2cq4_A RNA binding motif prote 21.7 87 0.003 26.2 4.2 48 547-595 33-87 (114)
141 3bil_A Probable LACI-family tr 21.6 3.5E+02 0.012 27.0 9.5 87 126-216 96-185 (348)
142 2c0n_A A197; thermophil protei 21.5 63 0.0022 31.5 3.6 67 165-246 16-88 (203)
143 3ia7_A CALG4; glycosysltransfe 21.4 5.5E+02 0.019 25.5 11.1 54 127-182 6-59 (402)
144 2cqp_A RNA-binding protein 12; 21.2 1E+02 0.0036 24.8 4.5 49 547-595 23-78 (98)
145 3m9w_A D-xylose-binding peripl 21.2 4.1E+02 0.014 25.6 9.8 87 126-216 32-124 (313)
146 2khc_A Testis-specific RNP-typ 21.0 70 0.0024 26.9 3.5 49 547-595 48-103 (118)
147 4f25_A Polyadenylate-binding p 20.8 96 0.0033 26.2 4.4 49 547-595 13-66 (115)
148 2e5g_A U6 snRNA-specific termi 20.8 1E+02 0.0035 24.8 4.3 46 547-592 16-63 (94)
149 1qg8_A Protein (spore coat pol 20.6 4.4E+02 0.015 24.5 9.6 108 128-245 4-124 (255)
150 2dgw_A Probable RNA-binding pr 20.5 92 0.0031 24.8 4.0 45 547-592 18-68 (91)
151 2dis_A Unnamed protein product 20.4 61 0.0021 26.8 2.9 48 547-594 16-72 (109)
152 3kjx_A Transcriptional regulat 20.4 4.2E+02 0.014 26.1 9.8 94 118-216 89-186 (344)
No 1
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=97.92 E-value=9.6e-05 Score=78.03 Aligned_cols=158 Identities=17% Similarity=0.123 Sum_probs=97.9
Q ss_pred EEEEcchhhHHHHHHHHHHHHHcCCC-eEEEEEeC---HHHHHHHHhCCCCeEecCCCCCcCccCC--CChHHHHHHHhH
Q 036925 130 IMTFGNYAFMDFILNWVQRLTDLGLS-NILVGALD---TKLVKALYWKGVPVFDMGSHMSTMDVGW--GSPTFHKMGREK 203 (639)
Q Consensus 130 IVT~~N~ay~df~~NWl~sl~r~Gv~-n~lVvAlD---~~t~~~c~~~Gvpcf~~~s~~~~~~~~~--Gs~~f~~m~~~K 203 (639)
|+..+|..|+.-+.-.+.|+++.+-+ .++|+..| ++..+.|++.+..+.............. ....+...++.|
T Consensus 7 vt~~~d~~Yl~~a~vl~~SL~~~~s~~~l~vlv~~~is~~~~~~L~~~~~~v~~v~~l~~~~~~~~~~~~~~~~~~t~~K 86 (333)
T 1ll2_A 7 VTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELGVTLTK 86 (333)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGGHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHhCCEEEEEeecCCcchhhcccccccchHHHHHH
Confidence 34457999999999999999999753 45555543 6777778877765544432111000000 000112355666
Q ss_pred HHHHHHHHhcCCc-eEeeecceeEecCCccccccCCCccEEeccCCCCCCccCcchhhhhhcCCcceeeEEEEecChHHH
Q 036925 204 AILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGIFHWRPTESAK 282 (639)
Q Consensus 204 ~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~~~~aDv~vSsD~~~~~~~dd~le~w~~~~~~~NtGf~~~R~T~~s~ 282 (639)
+.+.. + ..|+ ||+.|+|++.++|+-+.|.. + .+....|. .| ...+|+|+|.++++...
T Consensus 87 l~i~~-l--~~ydrvlYLDaD~lv~~di~eLf~~-~--~~aAv~d~-----------~~---~~~fNsGvmlin~~~~~- 145 (333)
T 1ll2_A 87 LHCWS-L--TQYSKCVFMDADTLVLANIDDLFER-E--ELSAAPDP-----------GW---PDCFNSGVFVYQPSVET- 145 (333)
T ss_dssp GGGGG-C--TTCSEEEEECTTEEECSCCGGGGGS-C--SSEEEECS-----------SS---TTSEEEEEEEECCCHHH-
T ss_pred HHHhH-h--cCCCeEEEEeCCEEeccCHHHHhCC-C--ceeEEecC-----------CC---CcceeeeEEEEeCCHHH-
Confidence 66443 2 3565 99999999999999998863 2 23222231 12 24699999999997433
Q ss_pred HHHHHHHHHHHcCC--CCCchHHHHHHHHh
Q 036925 283 KFAKEWKEMILADD--KIWDQNGFNELIRR 310 (639)
Q Consensus 283 ~f~~~W~~~l~~~~--~~~DQ~afN~ll~~ 310 (639)
++.+.+.+.... ...||.++|.++.+
T Consensus 146 --~~~l~~~~~~~~~~~~~DQ~~LN~~f~~ 173 (333)
T 1ll2_A 146 --YNQLLHVASEQGSFDGGDQGLLNTFFNS 173 (333)
T ss_dssp --HHHHHHHHHHTCCTTSSHHHHHHHHTTT
T ss_pred --HHHHHHHHHhcCCCCCCCHHHHHHHHHh
Confidence 455555544322 34699999998853
No 2
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=97.71 E-value=0.00039 Score=71.19 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=98.5
Q ss_pred EEEEE-cchhhHHHHHHHHHHHHHcCCCe-EEEEE---eCHHHHHHHHhCCCCeEecCCCCCcCc--c-CCCChHHHHHH
Q 036925 129 IIMTF-GNYAFMDFILNWVQRLTDLGLSN-ILVGA---LDTKLVKALYWKGVPVFDMGSHMSTMD--V-GWGSPTFHKMG 200 (639)
Q Consensus 129 VIVT~-~N~ay~df~~NWl~sl~r~Gv~n-~lVvA---lD~~t~~~c~~~Gvpcf~~~s~~~~~~--~-~~Gs~~f~~m~ 200 (639)
..||. +|..|+.-+.-.+.|+++.|-+. ++|+. ++++..+.|++.|..+........... . ..+...+ ..+
T Consensus 6 AyvTl~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~~-~~~ 84 (263)
T 3u2u_A 6 AFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPEL-GVT 84 (263)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTTG-GGG
T ss_pred EEEEEEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcch-hHH
Confidence 34444 68999999999999999998643 44444 356778888888776655432111000 0 0111122 245
Q ss_pred HhHHHHHHHHHhcCCc-eEeeecceeEecCCccccccCCCccEEeccCCCCCCccCcchhhhhhcCCcceeeEEEEecCh
Q 036925 201 REKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFARYPDADILTSSDQVVPTVVDDRLDIWQQVGAAYNVGIFHWRPTE 279 (639)
Q Consensus 201 ~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~~~~aDv~vSsD~~~~~~~dd~le~w~~~~~~~NtGf~~~R~T~ 279 (639)
+.|+.+.. ++ .|+ ||+.|+|++.++|.-+.|.. + .+....|. .| ...+|+|+|.+.++.
T Consensus 85 ~~kl~~~~-l~--~~~~vlylD~D~~v~~~~~~Lf~~-~--~~aA~~d~-----------~~---~~~fNsGv~li~p~~ 144 (263)
T 3u2u_A 85 LTKLHCWS-LT--QYSKCVFMDADTLVLANIDDLFDR-E--ELSAAPDP-----------GW---PDCFNSGVFVYQPSV 144 (263)
T ss_dssp GGGGGGGG-CT--TCSEEEEECTTEEECSCCGGGGGS-C--SSEEEECT-----------TS---TTSEEEEEEEECCCH
T ss_pred hHHHHhcc-cc--CcceEEEEcCCEeeccCHHHHhCC-C--cceEeccC-----------CC---CccccCeEEEEcccH
Confidence 56655443 33 476 99999999999999888853 2 23333331 12 246899999999874
Q ss_pred HHHHHHHHHHHHHHc--CCCCCchHHHHHHHHh
Q 036925 280 SAKKFAKEWKEMILA--DDKIWDQNGFNELIRR 310 (639)
Q Consensus 280 ~s~~f~~~W~~~l~~--~~~~~DQ~afN~ll~~ 310 (639)
.. .+...+.+.. .-...||+++|.++..
T Consensus 145 ~~---~~~l~~~~~~~~~~~~~DQd~LN~~f~~ 174 (263)
T 3u2u_A 145 ET---YNQLLHLASEQGSFDGGDQGILNTFFSS 174 (263)
T ss_dssp HH---HHHHHHHHHHHCCTTSSHHHHHHHHTTT
T ss_pred HH---HHHHHHHHHhcCCCCcccHHHHHHHhcc
Confidence 33 3444444332 2245799999999954
No 3
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=97.59 E-value=0.00085 Score=68.79 Aligned_cols=177 Identities=10% Similarity=0.015 Sum_probs=90.8
Q ss_pred EEEEcchhhHHHHHHHHHHHHHcCC-Ce--EEEEEe--CHHHHHHHHh----CCCCe--EecCCCCCcCccCCCChHHHH
Q 036925 130 IMTFGNYAFMDFILNWVQRLTDLGL-SN--ILVGAL--DTKLVKALYW----KGVPV--FDMGSHMSTMDVGWGSPTFHK 198 (639)
Q Consensus 130 IVT~~N~ay~df~~NWl~sl~r~Gv-~n--~lVvAl--D~~t~~~c~~----~Gvpc--f~~~s~~~~~~~~~Gs~~f~~ 198 (639)
|+..+|..|+..+...+.|+.+.+- .+ +.|+.- +++..+.+.+ .|... +........ .. -.++.|..
T Consensus 8 I~~~~d~~Y~~~~~v~i~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~~~~~-~~-~~~~~~s~ 85 (276)
T 3tzt_A 8 LLLTLDENYIPQMKVLMTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATDDLFS-FA-KVTDRYPK 85 (276)
T ss_dssp EEEECCGGGHHHHHHHHHHHHHHSTTCCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC---------------CH
T ss_pred EEEEeCHhHHHHHHHHHHHHHHhCCCCceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCHHHHh-cC-ccccccCH
Confidence 6788999999999999999988865 23 334443 3454444433 34322 222211100 00 01123434
Q ss_pred HHHhHHHHHHHHHhcCCc-eEeeecceeEecCCcccccc-CCCccEEeccCCCCCCccC-cchhhhhhcCCcceeeEEEE
Q 036925 199 MGREKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVVPTVVD-DRLDIWQQVGAAYNVGIFHW 275 (639)
Q Consensus 199 m~~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~~~~~d-d~le~w~~~~~~~NtGf~~~ 275 (639)
.+..|.. +-.++...++ ||+.|+|++.++|..+.|.. ..+.-+.+..|+....... -...........+|+|+|.+
T Consensus 86 ~~~~rl~-~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~~~~~~~~~~l~~~~~yfNsGV~li 164 (276)
T 3tzt_A 86 EMYYRLL-AGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTDMANNVNRIRLGTDTDYYNSGLLLI 164 (276)
T ss_dssp HHHHHHT-HHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC--------------------CEEEEEEEE
T ss_pred HHHHHHH-HHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccchHHHHHHHhcCCCCCCeEEeeEEEE
Confidence 5555554 4556665665 99999999999999888853 2334455555653210000 00000111136799999999
Q ss_pred ecCh-HHHHHHHHHHHHHHcCC---CCCchHHHHHHHH
Q 036925 276 RPTE-SAKKFAKEWKEMILADD---KIWDQNGFNELIR 309 (639)
Q Consensus 276 R~T~-~s~~f~~~W~~~l~~~~---~~~DQ~afN~ll~ 309 (639)
..+. +-..+.+.+.+.+.... ...||+++|.++.
T Consensus 165 nl~~~R~~~~~~~~~~~~~~~~~~~~~~DQd~LN~~f~ 202 (276)
T 3tzt_A 165 NLKRAREEIDPDEIFSFVEDNHMNLLLPDQDILNAMYG 202 (276)
T ss_dssp EHHHHHHHCCHHHHHHHHHHC--------CHHHHHHHG
T ss_pred EHHHHHhhhHHHHHHHHHHhccccccCCChhHHHHHHh
Confidence 7753 11122333334333332 3579999999985
No 4
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=97.33 E-value=0.002 Score=66.96 Aligned_cols=177 Identities=12% Similarity=0.050 Sum_probs=96.0
Q ss_pred EEEEcchhhHHHHHHHHHHH-HHcCCC--eEEEEEeC--HHHHHHHHhC----CCCeEe--cCCCCCcCccCCCChHHHH
Q 036925 130 IMTFGNYAFMDFILNWVQRL-TDLGLS--NILVGALD--TKLVKALYWK----GVPVFD--MGSHMSTMDVGWGSPTFHK 198 (639)
Q Consensus 130 IVT~~N~ay~df~~NWl~sl-~r~Gv~--n~lVvAlD--~~t~~~c~~~----Gvpcf~--~~s~~~~~~~~~Gs~~f~~ 198 (639)
|+..+|..|+..+...+.|+ .+..-. ++.|++.| ++..+.+.+. |..+.. ............ ...+..
T Consensus 3 I~~~~d~~Y~~~~~vli~Sl~l~~~~~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~s~ 81 (311)
T 1g9r_A 3 IVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLN-IRHISI 81 (311)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHTCTTSCCEEEEEESSCCHHHHHHHHHHSGGGTTTEEEEECCGGGGTTSCCC-CTTCCG
T ss_pred EEEECCHhHHHHHHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHHHcCCEEEEEEcCHHHHhcCccc-cccCCH
Confidence 56678999999999999999 544322 34555544 6666666553 443322 221100000000 112223
Q ss_pred HHHhHHHHHHHHHhcCCc-eEeeecceeEecCCcccccc-CCCccEEeccCCCCCCccC--cchhhhhhcCCcceeeEEE
Q 036925 199 MGREKAILIDSVLPFGFE-LLMCDTDMVWLKNPLPYFAR-YPDADILTSSDQVVPTVVD--DRLDIWQQVGAAYNVGIFH 274 (639)
Q Consensus 199 m~~~K~~vl~~lL~~Gy~-VL~sDvDVVWlrDPlpyf~~-~~~aDv~vSsD~~~~~~~d--d~le~w~~~~~~~NtGf~~ 274 (639)
.+..|.. +-.++. .++ ||+.|+|++.++|.-+.|+. ..+.-+.+..|+....... ..+ ........+|+|+|.
T Consensus 82 ~~y~Rl~-l~~ll~-~~~kvlyLD~D~iv~~di~eL~~~~l~~~~~aav~d~~~~~~~~~~~~~-~~~~~~~yfNsGv~l 158 (311)
T 1g9r_A 82 TTYARLK-LGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKI-GMADGEYYFNAGVLL 158 (311)
T ss_dssp GGGGGGG-HHHHCC-SCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHHTSTTHHHHT-TCCTTSCCEEEEEEE
T ss_pred HHHHHHH-HHHHhh-hcCEEEEEcCCeEeccCHHHHhccCCCCcEEEEEeccchhhhHHHHHhc-CCCCCCceEeeeeee
Confidence 4455554 345554 565 99999999999999888853 2334444444532100000 000 000123479999999
Q ss_pred EecCh----HHHHHHHHHHHHHHcCCCCCchHHHHHHHHh
Q 036925 275 WRPTE----SAKKFAKEWKEMILADDKIWDQNGFNELIRR 310 (639)
Q Consensus 275 ~R~T~----~s~~f~~~W~~~l~~~~~~~DQ~afN~ll~~ 310 (639)
+..+. ...+-+.+|.+.....-...||..+|.++.+
T Consensus 159 inl~~~r~~~~~~~~~~~~~~~~~~~~~~DQd~lN~~f~~ 198 (311)
T 1g9r_A 159 INLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDILNGLFKG 198 (311)
T ss_dssp ECHHHHTTSCHHHHHHHHHHHHTTTCSSHHHHHHHHHHTT
T ss_pred eeHHHHHhcchHHHHHHHHHhccCcCccCCcCHHHHHHcC
Confidence 97752 1112233444432222345699999988753
No 5
>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A*
Probab=95.02 E-value=0.029 Score=60.38 Aligned_cols=73 Identities=22% Similarity=0.378 Sum_probs=50.7
Q ss_pred CCCeeEeccCCCccccccCcchhhhHHHHHHHHHHHHHHHHHHHHHhCCe----eecCCcceeccccccCCCCccCCccc
Q 036925 394 PGGFLSFKPFIPKSLLLDGKHDLESHFALVNYQMKQIRTALAIASVLNRT----LVMPPLWCRLDRLWFPHPGVLEGTMT 469 (639)
Q Consensus 394 p~~~Lt~d~~~P~~~l~~~~~~i~~h~~~~~~ql~q~r~alAlA~~l~Rt----LVlP~~~C~cd~~W~~~~~~~~g~~~ 469 (639)
..|||.||++.+.. -|.|...+..++++|+.|||| |||||+ |.. ..|..+.. ..+
T Consensus 21 ~~rYl~y~~~~g~G---------------fn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw-~~~-~h~~~~~~----~~~ 79 (408)
T 4ap5_A 21 RRRYLLYDVNPPEG---------------FNLRRDVYIRIASLLKTLLKTEEWVLVLPPW-GRL-YHWQSPDI----HQV 79 (408)
T ss_dssp CCEEEEECCCTTCC---------------HHHHHHHHHHHHHHHHHHHTTSCEEEEECCB-CCS-CGGGSTTS----CCC
T ss_pred ccceEEecCCCCCc---------------ccHHHHHHHHHHHHHHHHhCcCCcEEEeCCC-ccc-ccccCCcc----cce
Confidence 45899999875422 245888888888999999999 999998 322 34544321 223
Q ss_pred ccCccCCCCcccchhhhhhcCC
Q 036925 470 RQPFLCPLDHVFEVNVMLQQLP 491 (639)
Q Consensus 470 ~~Pf~CPlDhv~~~~~~~~~~p 491 (639)
++ |.+.+|+++.|.+..|
T Consensus 80 ~i----pf~~fFDv~~L~~~vp 97 (408)
T 4ap5_A 80 RI----PWSEFFDLPSLNKNIP 97 (408)
T ss_dssp SB----CGGGTBCHHHHHTTSC
T ss_pred ec----cHHHhcCHHHHHhhCC
Confidence 34 4567999999877554
No 6
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=89.57 E-value=0.19 Score=53.19 Aligned_cols=26 Identities=42% Similarity=0.549 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhCCeeecCCcce
Q 036925 426 QMKQIRTALAIASVLNRTLVMPPLWC 451 (639)
Q Consensus 426 ql~q~r~alAlA~~l~RtLVlP~~~C 451 (639)
|..++==+||.|+.|||||||||+-=
T Consensus 23 QadhfLG~LafAk~lnRTLvlPpwi~ 48 (362)
T 3zy2_A 23 QVDQFLGVLAFAKALDRTLVLPNFIE 48 (362)
T ss_dssp HHHHHHHHHHHHHHHTCEEECCCEEE
T ss_pred HHHHHHHHHHHHHhhCceEecCcccc
Confidence 77778889999999999999999944
No 7
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=77.68 E-value=3.3 Score=35.40 Aligned_cols=52 Identities=21% Similarity=0.432 Sum_probs=41.8
Q ss_pred EeCCCCCHHHHHHhhcccCCceEEEeC---------CccccccCCCcHHHHHHHHHHhccc
Q 036925 546 RFPRHSSEETFKTVFSSFKDVKVINFS---------SMKNAFLNFTDKTREERFRRRVKRY 597 (639)
Q Consensus 546 ~~~~~~~~~~l~~~l~~~~~~~vl~~~---------~~~~~f~gf~d~~~~~~f~~~~~~~ 597 (639)
.||+++|++++.+.|+++..+--..|- ..-++.-.|.+.+....|.++++.+
T Consensus 8 rLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~ 68 (91)
T 1uw4_A 8 RLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGY 68 (91)
T ss_dssp EECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCc
Confidence 499999999999999998876656661 1135677889999999999999853
No 8
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=60.15 E-value=5.5 Score=34.51 Aligned_cols=50 Identities=18% Similarity=0.340 Sum_probs=38.6
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEe---------CCccccccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINF---------SSMKNAFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~---------~~~~~~f~gf~d~~~~~~f~~~~~~ 596 (639)
|||++|++++.+.|+++...-=..| ....+++-.|.+.+.-..|.++++.
T Consensus 17 LPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 17 LPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp CCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT
T ss_pred CCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 9999999999999999776322222 1123678889999999999999875
No 9
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=58.56 E-value=50 Score=31.70 Aligned_cols=85 Identities=8% Similarity=0.063 Sum_probs=51.3
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeCHHHHH-HHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhHH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALDTKLVK-ALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKA 204 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD~~t~~-~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~ 204 (639)
+-.+++..++.. .+-..+.++.+...+++-+|+...+.+..+ .+.+.|+|++.......... +-..+....+..
T Consensus 38 g~~~~~~~~~~~-~~~~~~~~~~l~~~~~dgiIi~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~--~V~~D~~~~g~~-- 112 (277)
T 3e61_A 38 GYQVLIGNSDND-IKKAQGYLATFVSHNCTGMISTAFNENIIENTLTDHHIPFVFIDRINNEHN--GISTNHFKGGQL-- 112 (277)
T ss_dssp TCCEEEEECTTC-HHHHHHHHHHHHHTTCSEEEECGGGHHHHHHHHHHC-CCEEEGGGCC-----------HHHHHHH--
T ss_pred CCEEEEEeCCCC-HHHHHHHHHHHHhCCCCEEEEecCChHHHHHHHHcCCCCEEEEeccCCCCC--eEEechHHHHHH--
Confidence 444555554443 233345667777789999999889999999 99999999988765443222 222333444333
Q ss_pred HHHHHHHhcCCc
Q 036925 205 ILIDSVLPFGFE 216 (639)
Q Consensus 205 ~vl~~lL~~Gy~ 216 (639)
++..|++.|+.
T Consensus 113 -a~~~L~~~G~~ 123 (277)
T 3e61_A 113 -QAEVVRKGKGK 123 (277)
T ss_dssp -HHHHHHHTTCC
T ss_pred -HHHHHHHCCCC
Confidence 45667778986
No 10
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.11 E-value=14 Score=30.37 Aligned_cols=50 Identities=10% Similarity=0.269 Sum_probs=40.4
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|-.+.-+++..-.+ +|-.|.+.+.|++.-+.+..
T Consensus 25 lp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g 75 (97)
T 1why_A 25 LGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRG 75 (97)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCC
Confidence 899999999999999999877777754444 68889999888877666653
No 11
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=55.80 E-value=14 Score=30.52 Aligned_cols=50 Identities=16% Similarity=0.339 Sum_probs=40.4
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|-.+.-+++..-.+ +|--|.+.+.|++.-+.+..
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g 73 (99)
T 2cpj_A 23 LPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDN 73 (99)
T ss_dssp CCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCC
Confidence 799999999999999998877777654444 68899999888877666653
No 12
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=52.91 E-value=16 Score=29.59 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=37.3
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.+ .+.=+++....+ +|--|.+.+.+++--+.+.
T Consensus 13 Lp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~ 61 (88)
T 1wg1_A 13 LPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFH 61 (88)
T ss_dssp CCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhC
Confidence 89999999999999998 665556643344 6889999988887666554
No 13
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=51.81 E-value=94 Score=29.78 Aligned_cols=87 Identities=9% Similarity=0.164 Sum_probs=52.2
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC-HHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhHH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD-TKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKA 204 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD-~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~ 204 (639)
+-.+++..++.. .+--...+..+...+++-+|+...+ .+..+.+.+.|+|++............+-..+....+..
T Consensus 37 g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~-- 113 (276)
T 3jy6_A 37 GYIGVLFDANAD-IEREKTLLRAIGSRGFDGLILQSFSNPQTVQEILHQQMPVVSVDREMDACPWPQVVTDNFEAAKA-- 113 (276)
T ss_dssp TCEEEEEECTTC-HHHHHHHHHHHHTTTCSEEEEESSCCHHHHHHHHTTSSCEEEESCCCTTCSSCEEECCHHHHHHH--
T ss_pred CCEEEEEeCCCC-HHHHHHHHHHHHhCCCCEEEEecCCcHHHHHHHHHCCCCEEEEecccCCCCCCEEEEChHHHHHH--
Confidence 334444444432 2333456677777789988888776 567777888999998876543322222222233344333
Q ss_pred HHHHHHHhcCCc
Q 036925 205 ILIDSVLPFGFE 216 (639)
Q Consensus 205 ~vl~~lL~~Gy~ 216 (639)
++..|++.|+.
T Consensus 114 -a~~~L~~~G~~ 124 (276)
T 3jy6_A 114 -ATTAFRQQGYQ 124 (276)
T ss_dssp -HHHHHHTTTCC
T ss_pred -HHHHHHHcCCC
Confidence 45667788986
No 14
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=50.62 E-value=62 Score=30.76 Aligned_cols=87 Identities=14% Similarity=0.087 Sum_probs=52.6
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC---HHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHh
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD---TKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGRE 202 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD---~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~ 202 (639)
+-.+++..++.. .+-..+.++.+...+++-+++...+ .+..+.+.+.|+|++............+-..+....+..
T Consensus 32 g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~ 110 (272)
T 3o74_A 32 GYQLLIASSDDQ-PDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRLDPAHFCSVISDDRDASRQ 110 (272)
T ss_dssp TCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCCCTTTCEEEEECHHHHHHH
T ss_pred CCEEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHHcCCCEEEEccCCCccccCEEEEchHHHHHH
Confidence 445555554432 2333456667777789888887765 567788899999998876543322222222233333332
Q ss_pred HHHHHHHHHhcCCc
Q 036925 203 KAILIDSVLPFGFE 216 (639)
Q Consensus 203 K~~vl~~lL~~Gy~ 216 (639)
.+..+++.|+.
T Consensus 111 ---a~~~L~~~G~~ 121 (272)
T 3o74_A 111 ---LAASLLSSAPR 121 (272)
T ss_dssp ---HHHHHHTTCCS
T ss_pred ---HHHHHHHCCCc
Confidence 45677888985
No 15
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=50.07 E-value=24 Score=31.11 Aligned_cols=72 Identities=10% Similarity=0.038 Sum_probs=47.0
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhccccceeeeccCCCCceeeeecccCCCC
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVKRYVGIWCCVDSHTPGHIYYDMYWDEKP 622 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~~~~~~wCC~~~~~~g~~~y~~~~~~~~ 622 (639)
|+...++++|++.+++|-.+.-+.+..-.+ +|--|.+.+.|++--+.|.. ....|... .|..-|-=|....|
T Consensus 35 L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG--~~~~~~lg--~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 35 LGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNG--KEVVDDLG--QKITLYLNFVEKVQ 107 (114)
T ss_dssp GGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTT--CEEECTTS--CEEECEEEEESCCC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCC--CEEccccC--CCcEEEEEecccCc
Confidence 677889999999999999877777654344 68889998877755555543 23323222 24545544555455
No 16
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=47.73 E-value=23 Score=29.17 Aligned_cols=49 Identities=12% Similarity=0.262 Sum_probs=38.3
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|..+.-+++....+ +|--|.+.+.+++.-+.+.
T Consensus 35 lp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 84 (101)
T 2la4_A 35 IPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALA 84 (101)
T ss_dssp CCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhC
Confidence 799999999999999987766666543344 6889999988887666654
No 17
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=46.90 E-value=21 Score=30.66 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=38.2
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...|+++|.+++++|-.++=+.+-..++ +|--|.+.+.|.+--+.++.
T Consensus 29 Lp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~ 79 (100)
T 3r27_A 29 LIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAAD 79 (100)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcC
Confidence 799999999999999998776555533344 78899999888766555543
No 18
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.84 E-value=23 Score=28.54 Aligned_cols=48 Identities=27% Similarity=0.528 Sum_probs=38.0
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|-.+.-+++. .+ +|--|.+.+.|++.-+.+..
T Consensus 16 lp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g 64 (90)
T 2dnq_A 16 LPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHH 64 (90)
T ss_dssp CCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcC
Confidence 79999999999999999877666654 33 68889999888876666653
No 19
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.88 E-value=15 Score=29.87 Aligned_cols=49 Identities=12% Similarity=0.189 Sum_probs=37.1
Q ss_pred eCCCCCHHHHHHhhcccCC-ceEEEeCCccccccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKD-VKVINFSSMKNAFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~-~~vl~~~~~~~~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|.. +..+.+.+---+|-.|.+.+.|++.-+.+.
T Consensus 16 Lp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 65 (93)
T 2cqh_A 16 LSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLS 65 (93)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHcc
Confidence 8999999999999999877 554444332236889999988887666664
No 20
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=44.32 E-value=27 Score=29.77 Aligned_cols=49 Identities=14% Similarity=0.247 Sum_probs=39.8
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.+++|-.+.-+.+....+ +|--|.+.+.|++--+.+.
T Consensus 18 Lp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~ 67 (111)
T 1whx_A 18 LPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLA 67 (111)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhC
Confidence 899999999999999999887777765554 7888999988876555554
No 21
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=44.20 E-value=99 Score=29.69 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=51.3
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC-------HHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD-------TKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHK 198 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD-------~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~ 198 (639)
+-.+++..++.. .+--.+-+..+...+++-+|+...| .+.++.+.+.|+|++............+-..+..+
T Consensus 45 g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~ 123 (298)
T 3tb6_A 45 GYSMLLTSTNNN-PDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINASYAELAAPSFTLDDVK 123 (298)
T ss_dssp TCEEEEEECTTC-HHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSCCTTCSSCEEEECHHH
T ss_pred CCEEEEEeCCCC-hHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecCcCCCCCCEEEeCcHH
Confidence 344555544432 2333556667777889988887754 36778888999999887654332222222223334
Q ss_pred HHHhHHHHHHHHHhcCCc
Q 036925 199 MGREKAILIDSVLPFGFE 216 (639)
Q Consensus 199 m~~~K~~vl~~lL~~Gy~ 216 (639)
.+.. .+..|++.|+.
T Consensus 124 ~~~~---a~~~L~~~G~~ 138 (298)
T 3tb6_A 124 GGMM---AAEHLLSLGHT 138 (298)
T ss_dssp HHHH---HHHHHHHTTCC
T ss_pred HHHH---HHHHHHHCCCC
Confidence 4332 45566778876
No 22
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=43.18 E-value=29 Score=29.49 Aligned_cols=48 Identities=21% Similarity=0.447 Sum_probs=38.1
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|..+.-+.+. .+ +|-.|.+.+.|++.-+.+..
T Consensus 39 Lp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g 87 (108)
T 2jvo_A 39 FPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHG 87 (108)
T ss_dssp SCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCC
Confidence 79999999999999998876666554 44 68889999888877666653
No 23
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.92 E-value=22 Score=28.16 Aligned_cols=48 Identities=17% Similarity=0.373 Sum_probs=37.9
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHh
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRV 594 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~ 594 (639)
||...++++|.+.++.+..+.-+++..-.+ +|-.|.+.+.|++--+.+
T Consensus 20 l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 20 LGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp CTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHh
Confidence 899999999999999998776666654444 688899998887665555
No 24
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.35 E-value=23 Score=29.12 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=36.5
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.|+.|..-+|..+.-..+ +|-.|.+.+.|++.-+.+..
T Consensus 23 Lp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (99)
T 2cpd_A 23 LMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNG 73 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCC
Confidence 799999999999999993333434333344 68889999888876666653
No 25
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=41.49 E-value=28 Score=29.67 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=37.3
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHh
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRV 594 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~ 594 (639)
||...++++|.+.+++|-.++-+.+..-.+ +|--|.+.+.|++--+.+
T Consensus 23 Lp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l 71 (104)
T 1wex_A 23 LCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFA 71 (104)
T ss_dssp CCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHh
Confidence 799999999999999998877666533344 788999998777655544
No 26
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=41.02 E-value=35 Score=28.52 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=39.3
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc---cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM---KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~---~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.|+.|-.+.-+++... .+ +|--|.+.+.|++.-+.+..
T Consensus 30 Lp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 83 (109)
T 1x4a_A 30 LPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 83 (109)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 7999999999999999988777776432 22 58889999888877666653
No 27
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.94 E-value=31 Score=30.44 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=36.7
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|++.+++|-.+.=+.+-.-.+ +|--|.+.+.|++--+.++
T Consensus 39 Lp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~ 88 (119)
T 2ad9_A 39 LPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYT 88 (119)
T ss_dssp CCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhc
Confidence 899999999999999988766554432344 7889999987776555443
No 28
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=40.80 E-value=24 Score=29.30 Aligned_cols=48 Identities=19% Similarity=0.374 Sum_probs=38.5
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCcc-ccccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMK-NAFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~-~~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|-.+.-+++. . -+|-.|.+.+.|++.-+.+..
T Consensus 19 l~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g 67 (103)
T 2dgu_A 19 LANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNG 67 (103)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCC
Confidence 89999999999999999887666654 3 368889999888877666654
No 29
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.65 E-value=24 Score=29.62 Aligned_cols=50 Identities=16% Similarity=0.283 Sum_probs=39.4
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|..+.-+++..-.+ +|-.|.+.+.|++.-+.+..
T Consensus 33 l~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g 83 (109)
T 1x4g_A 33 IASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 83 (109)
T ss_dssp CSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCC
Confidence 899999999999999998776666644344 68899999888876666643
No 30
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=39.23 E-value=30 Score=27.81 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=36.7
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC---Cc-cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS---SM-KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~---~~-~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|-.+.-+++. +. .+ +|-.|.+.+.|++.-+.+..
T Consensus 16 lp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g 70 (92)
T 2dgv_A 16 LPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNG 70 (92)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 79999999999999988766555442 11 22 58889999888876666553
No 31
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=38.88 E-value=39 Score=27.93 Aligned_cols=48 Identities=19% Similarity=0.366 Sum_probs=38.8
Q ss_pred eCC-CCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPR-HSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~-~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||. ..++++|.+.++.|..+.-+++. .+ +|-.|.+.+.|++.-+.+..
T Consensus 30 Lp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g 79 (97)
T 2xnq_A 30 LPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQ 79 (97)
T ss_dssp CCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCC
Confidence 787 99999999999999988777774 44 68889999888876665543
No 32
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.87 E-value=20 Score=29.51 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=37.9
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc--cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM--KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~--~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|..++++.-.+- .+ +|-.|.+.+.|++.-+.+.
T Consensus 23 Lp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 74 (101)
T 2fc9_A 23 LSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 74 (101)
T ss_dssp CCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTS
T ss_pred CCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 7999999999999999998876654222 22 6889999988886666554
No 33
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.62 E-value=34 Score=28.21 Aligned_cols=50 Identities=14% Similarity=0.296 Sum_probs=37.5
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC---Cc-cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS---SM-KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~---~~-~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|-.+.-+++. +. .+ +|--|.+.+.|++.-+.+..
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 77 (103)
T 2d9p_A 23 LDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 77 (103)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCC
Confidence 89999999999999998876555543 12 23 68889999888876666553
No 34
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=37.99 E-value=36 Score=28.57 Aligned_cols=48 Identities=15% Similarity=0.244 Sum_probs=38.4
Q ss_pred eCCC-CCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRH-SSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~-~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||.. .++++|.+.|+.|-.+.-+++ ..+ +|-.|.+.+.|++.-+.+..
T Consensus 35 l~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g 84 (110)
T 1wf1_A 35 LNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENG 84 (110)
T ss_dssp CCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTT
T ss_pred CCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCC
Confidence 7888 999999999999888777777 333 68889999888877666653
No 35
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.66 E-value=36 Score=27.40 Aligned_cols=49 Identities=16% Similarity=0.379 Sum_probs=36.9
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|-.+.-+++. +. .+ +|--|.+.+.|++.-+.+.
T Consensus 23 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (95)
T 2cqc_A 23 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 78 (95)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 79999999999999998876555552 11 22 6888999988887666554
No 36
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=37.58 E-value=1.9e+02 Score=28.18 Aligned_cols=90 Identities=14% Similarity=0.198 Sum_probs=51.1
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC----HHHHHHHHhCCCCeEecCCCCCc-CccC-CCChHHHHH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD----TKLVKALYWKGVPVFDMGSHMST-MDVG-WGSPTFHKM 199 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD----~~t~~~c~~~Gvpcf~~~s~~~~-~~~~-~Gs~~f~~m 199 (639)
+=.+++..++.. .+--.+-++.+...+++-+++...| ....+.+.+.|+|++........ .... +-..+..+.
T Consensus 33 g~~~~~~~~~~~-~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~V~~D~~~~ 111 (330)
T 3uug_A 33 GYKTDLQYADDD-IPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLIRNSGDVSYYATFDNFQV 111 (330)
T ss_dssp TCEEEEEECTTC-HHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCCCSCTTCCEEEEECHHHH
T ss_pred CCEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCCCCCCceeEEEEeCHHHH
Confidence 334555554432 2233455666666789988888877 34577888999999887654432 1221 222344455
Q ss_pred HHhHHHHHHHHHh----cCCc
Q 036925 200 GREKAILIDSVLP----FGFE 216 (639)
Q Consensus 200 ~~~K~~vl~~lL~----~Gy~ 216 (639)
+..=...+.+.+. .|+.
T Consensus 112 g~~a~~~l~~~~~~~~~~G~~ 132 (330)
T 3uug_A 112 GVLQATSITDKLGLKDGKGPF 132 (330)
T ss_dssp HHHHHHHHHHHHTGGGTCCCE
T ss_pred HHHHHHHHHHHhcccCCCCce
Confidence 5544444444443 6873
No 37
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.36 E-value=40 Score=27.15 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=37.4
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC------ccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS------MKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~------~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|-.+.-+++.. ..+ +|--|.+.+.|++.-+.+.
T Consensus 24 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 79 (94)
T 2e5h_A 24 LPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAIN 79 (94)
T ss_dssp CCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcC
Confidence 899999999999999998776666632 122 6888999988886665554
No 38
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.33 E-value=35 Score=28.91 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=36.3
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHh
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRV 594 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~ 594 (639)
||...++++|.+++++|-.+.=+.+-.-.+ +|--|.+.+.|++--+.+
T Consensus 23 Lp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l 71 (101)
T 2cq1_A 23 LPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYY 71 (101)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHh
Confidence 799999999999999998875554433344 688899998777655444
No 39
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.07 E-value=43 Score=27.43 Aligned_cols=50 Identities=16% Similarity=0.366 Sum_probs=39.0
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc---cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM---KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~---~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.|+.+.+++++.-... .+ +|--|.+.+.|++.-+.+..
T Consensus 23 Lp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 2fc8_A 23 LSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMED 76 (102)
T ss_dssp CCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCC
Confidence 8999999999999999987777765322 23 68899999888876666553
No 40
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=36.85 E-value=37 Score=27.76 Aligned_cols=47 Identities=19% Similarity=0.349 Sum_probs=38.0
Q ss_pred eCC-CCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPR-HSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~-~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||. ..++++|.+.++.|-.+.-+++. .+ +|-.|.+.+.|++.-+.+.
T Consensus 18 lp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~ 66 (96)
T 2kvi_A 18 LPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECES 66 (96)
T ss_dssp STTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHT
T ss_pred CCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcC
Confidence 787 99999999999999887777774 44 6888999988887666554
No 41
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=36.32 E-value=2.4e+02 Score=27.13 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=49.5
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL--DTKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREK 203 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K 203 (639)
+-.+++..++.. .+-..+.++.+...+++-+|+... +.+..+.+.+.|+|++............+-..+..+.+..
T Consensus 46 g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~- 123 (289)
T 2fep_A 46 KYNIILSNSDQN-MEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAIDYEQAIYD- 123 (289)
T ss_dssp TCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHSSSCEEEESCCCTTCCSCEEECCHHHHHHH-
T ss_pred CCEEEEEeCCCC-HHHHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHhcCCCEEEEccccCCCCCCEEEECcHHHHHH-
Confidence 344555544432 223345566677778888877664 5667788888999988876533221222222233333332
Q ss_pred HHHHHHHHhcCCc
Q 036925 204 AILIDSVLPFGFE 216 (639)
Q Consensus 204 ~~vl~~lL~~Gy~ 216 (639)
+...|++.|+.
T Consensus 124 --a~~~L~~~G~~ 134 (289)
T 2fep_A 124 --AVKLLVDKGHT 134 (289)
T ss_dssp --HHHHHHHTTCS
T ss_pred --HHHHHHHCCCC
Confidence 45566778875
No 42
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.32 E-value=45 Score=27.35 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=37.6
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----C-ccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----S-MKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~-~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.|+.|-.+.-+++. + ..+ +|-.|.+.+.|++--+.+.
T Consensus 20 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2cqb_A 20 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 75 (102)
T ss_dssp CCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 89999999999999998877666662 1 123 6889999988887665554
No 43
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=36.31 E-value=1.4e+02 Score=28.54 Aligned_cols=74 Identities=12% Similarity=0.223 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHcCCCeEEEEEeC--HHHHHHHHhCCCCeEecCCCCCcCc-cCCCChHHHHHHHhHHHHHHHHHhcCCc
Q 036925 140 DFILNWVQRLTDLGLSNILVGALD--TKLVKALYWKGVPVFDMGSHMSTMD-VGWGSPTFHKMGREKAILIDSVLPFGFE 216 (639)
Q Consensus 140 df~~NWl~sl~r~Gv~n~lVvAlD--~~t~~~c~~~Gvpcf~~~s~~~~~~-~~~Gs~~f~~m~~~K~~vl~~lL~~Gy~ 216 (639)
+...+.++.+...+++-+|+...+ .+..+.+.+.|+|++.......... ..+-..+....+.. ++..+++.|+.
T Consensus 56 ~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~---a~~~L~~~G~~ 132 (292)
T 3k4h_A 56 EIFNGVVKMVQGRQIGGIILLYSRENDRIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAARE---VAEYLISLGHK 132 (292)
T ss_dssp HHHHHHHHHHHTTCCCEEEESCCBTTCHHHHHHHHTTCCEEEESCCSSCTTTSCEEECCHHHHHHH---HHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECcHHHHHH---HHHHHHHCCCc
Confidence 344556677777788887776543 5677888899999988765432221 22222233333332 45567778886
No 44
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=36.26 E-value=34 Score=28.15 Aligned_cols=50 Identities=16% Similarity=0.296 Sum_probs=38.0
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC-ccc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS-MKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~-~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|-.+.-+++.. ..+ +|-.|.+.+.|++--+.+..
T Consensus 8 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g 59 (101)
T 2hvz_A 8 LGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDG 59 (101)
T ss_dssp CCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCC
Confidence 789999999999999987766665532 243 68899999888876665543
No 45
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=36.19 E-value=99 Score=29.83 Aligned_cols=87 Identities=7% Similarity=0.087 Sum_probs=49.0
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC--HHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD--TKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREK 203 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD--~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K 203 (639)
+-.+++..++.. .+-...-++.+...+++-+|+...+ .+..+.+.+.|+|++............+-..+....+..
T Consensus 38 g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~- 115 (291)
T 3egc_A 38 GYSVLLANTAED-IVREREAVGQFFERRVDGLILAPSEGEHDYLRTELPKTFPIVAVNRELRIPGCGAVLSENVRGART- 115 (291)
T ss_dssp TCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEECCCSSCCHHHHHSSCTTSCEEEESSCCCCTTCEEEEECHHHHHHH-
T ss_pred CCEEEEEeCCCC-HHHHHHHHHHHHHCCCCEEEEeCCCCChHHHHHhhccCCCEEEEecccCCCCCCEEEECcHHHHHH-
Confidence 344444444332 2233455666677788888877764 566677777899988776543322222222233344332
Q ss_pred HHHHHHHHhcCCc
Q 036925 204 AILIDSVLPFGFE 216 (639)
Q Consensus 204 ~~vl~~lL~~Gy~ 216 (639)
++..|++.|+.
T Consensus 116 --a~~~L~~~G~~ 126 (291)
T 3egc_A 116 --AVEYLIARGHT 126 (291)
T ss_dssp --HHHHHHHTTCC
T ss_pred --HHHHHHHcCCC
Confidence 45566677875
No 46
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=36.05 E-value=44 Score=27.60 Aligned_cols=48 Identities=17% Similarity=0.477 Sum_probs=38.3
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc-------cc-cccCCCcHHHHHHHHHHh
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM-------KN-AFLNFTDKTREERFRRRV 594 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~-------~~-~f~gf~d~~~~~~f~~~~ 594 (639)
||...++++|.+.|+.|-.+.-+++..- .+ +|--|.+.+.|++.-+.+
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 23 IPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 8999999999999999988776766322 22 588899998888777666
No 47
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.80 E-value=40 Score=27.17 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=38.0
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccccccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKNAFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|-.+.-+++..- -+|-.|.+.+.|++.-+.+..
T Consensus 18 Lp~~~t~~~l~~~F~~~G~v~~v~~~~~-~afV~f~~~~~a~~A~~~l~g 66 (92)
T 2dgt_A 18 ISPTCTNQELRAKFEEYGPVIECDIVKD-YAFVHMERAEDAVEAIRGLDN 66 (92)
T ss_dssp CCSSCCHHHHHHHHHTTSCCCEEEECSS-EEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEECC-EEEEEECCHHHHHHHHHHhCC
Confidence 7999999999999999987766666421 468889999888876666653
No 48
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=35.48 E-value=1.3e+02 Score=31.32 Aligned_cols=106 Identities=9% Similarity=0.069 Sum_probs=66.2
Q ss_pred eEEEEEcchhhHHHHHHHHHHHHHcC--C-CeEEEEEeCH---HHHHHHHhCCCCeEec--C-CCC-CcCccCCCChHHH
Q 036925 128 IIIMTFGNYAFMDFILNWVQRLTDLG--L-SNILVGALDT---KLVKALYWKGVPVFDM--G-SHM-STMDVGWGSPTFH 197 (639)
Q Consensus 128 tVIVT~~N~ay~df~~NWl~sl~r~G--v-~n~lVvAlD~---~t~~~c~~~Gvpcf~~--~-s~~-~~~~~~~Gs~~f~ 197 (639)
.|+|.+.|.. + +..-++++.+.. . +..+|++-|. ++.+.++..+.++-.. + .+. ...+...|.++|.
T Consensus 5 pViI~~yNRp--~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~~~~~vi~~~~~~I~~~~~~d~~~~~~~~~N~g~~~y~ 81 (343)
T 1fo8_A 5 PILVIACDRS--T-VRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY 81 (343)
T ss_dssp CEEEEESSCT--T-HHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHH
T ss_pred cEEEEECCcH--H-HHHHHHHHHhcCCCcCCcEEEEEECCCCHHHHHHHHHcCCceEEEEcCCccccccchhhcCcccch
Confidence 4788889988 5 777888887764 3 2356777654 5666666654332221 1 111 1123344555666
Q ss_pred HHHHhHHHHHHHHHh--cCCceEeeecceeEecCCcccccc
Q 036925 198 KMGREKAILIDSVLP--FGFELLMCDTDMVWLKNPLPYFAR 236 (639)
Q Consensus 198 ~m~~~K~~vl~~lL~--~Gy~VL~sDvDVVWlrDPlpyf~~ 236 (639)
++...-...+..+.+ .+=.|++.|-|++.-.|-+.||..
T Consensus 82 ~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~ 122 (343)
T 1fo8_A 82 KIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHH
Confidence 665554555555555 444599999999998888888864
No 49
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=35.48 E-value=45 Score=27.14 Aligned_cols=49 Identities=22% Similarity=0.307 Sum_probs=37.8
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC-----c-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS-----M-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~-----~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|..+.-+++.. . .+ +|-.|.+.+.|++.-+.+.
T Consensus 10 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 65 (96)
T 2x1f_A 10 IPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 65 (96)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 789999999999999998776666631 1 22 6788999988887666655
No 50
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.46 E-value=38 Score=27.10 Aligned_cols=43 Identities=21% Similarity=0.435 Sum_probs=34.3
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC-ccc-cccCCCcHHHHHH
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS-MKN-AFLNFTDKTREER 589 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~-~~~-~f~gf~d~~~~~~ 589 (639)
||...++++|.+.++.|-.+.-+++.. ..+ +|--|.+.+.|++
T Consensus 13 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~ 57 (88)
T 1wf0_A 13 CTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQS 57 (88)
T ss_dssp CCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHH
Confidence 799999999999999998877776642 233 6888999987763
No 51
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=35.36 E-value=47 Score=27.31 Aligned_cols=49 Identities=16% Similarity=0.436 Sum_probs=37.0
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC----Cccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS----SMKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~----~~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.|+.|-.+.-+++. +..+ +|--|.+.+.|++.-+.+.
T Consensus 23 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cq3_A 23 IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 76 (103)
T ss_dssp CCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhC
Confidence 79999999999999998876655552 1133 6888999988886666554
No 52
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=34.59 E-value=23 Score=28.84 Aligned_cols=49 Identities=14% Similarity=0.353 Sum_probs=38.1
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCcc-c-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMK-N-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~-~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.+.+++++.-++.. + +|-.|.+.+.|++--+.+.
T Consensus 24 L~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 74 (96)
T 1fjc_A 24 LSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQ 74 (96)
T ss_dssp CCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 79999999999999999888888444333 2 6888999988876655554
No 53
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=34.31 E-value=51 Score=27.20 Aligned_cols=49 Identities=12% Similarity=0.330 Sum_probs=37.2
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|..+.-+++. +. .+ +|-.|.+.+.|++.-+.+.
T Consensus 31 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 86 (106)
T 1p27_B 31 VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 86 (106)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc
Confidence 79999999999999998876666552 11 23 6888999988887666554
No 54
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.25 E-value=51 Score=26.51 Aligned_cols=50 Identities=18% Similarity=0.371 Sum_probs=37.7
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc------cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM------KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~------~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.+-.+.-+++..- .+ +|--|.+.+.|++.-+.+..
T Consensus 13 lp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 69 (95)
T 2dnz_A 13 LHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNG 69 (95)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCC
Confidence 7999999999999999987766655211 22 68889999888876665553
No 55
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.08 E-value=57 Score=25.68 Aligned_cols=49 Identities=8% Similarity=0.230 Sum_probs=36.9
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC-----c-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS-----M-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~-----~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.+..+.-+++.. . .+ +|--|.+.+.+++.-+.+.
T Consensus 13 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (85)
T 1x4e_A 13 LQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK 68 (85)
T ss_dssp CCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc
Confidence 899999999999999998776665521 1 22 5778999988877666554
No 56
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=33.58 E-value=49 Score=27.89 Aligned_cols=50 Identities=12% Similarity=0.321 Sum_probs=37.0
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.|+.|-.+.-+++. +. .+ +|--|.+.+.+++.-+.+..
T Consensus 33 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 89 (115)
T 2cpz_A 33 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG 89 (115)
T ss_dssp CCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCC
Confidence 89999999999999988765544442 11 12 68899999988877666653
No 57
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.35 E-value=35 Score=29.52 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=36.1
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHh
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRV 594 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~ 594 (639)
||...++++|++++++|-.++=+.+-.-.+ +|--|.+.+.|++--+.+
T Consensus 24 Lp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l 72 (105)
T 1sjq_A 24 LPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYY 72 (105)
T ss_dssp CCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHh
Confidence 799999999999999988765555433344 688899988777555544
No 58
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=33.27 E-value=1.3e+02 Score=29.22 Aligned_cols=73 Identities=10% Similarity=0.071 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCCeEEEEEeC--HHHHHHHHhCCCCeEecCCCCCcC--ccCCCChHHHHHHHhHHHHHHHHHhcCCc
Q 036925 141 FILNWVQRLTDLGLSNILVGALD--TKLVKALYWKGVPVFDMGSHMSTM--DVGWGSPTFHKMGREKAILIDSVLPFGFE 216 (639)
Q Consensus 141 f~~NWl~sl~r~Gv~n~lVvAlD--~~t~~~c~~~Gvpcf~~~s~~~~~--~~~~Gs~~f~~m~~~K~~vl~~lL~~Gy~ 216 (639)
-....+..+...+++-+|+...+ ++..+.+.+.|+|++......... ...+-..+....+. .++..|++.|+.
T Consensus 56 ~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~---~a~~~L~~~G~~ 132 (295)
T 3hcw_A 56 LMDEVYKMIKQRMVDAFILLYSKENDPIKQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNILASE---NLTRHVIEQGVD 132 (295)
T ss_dssp HHHHHHHHHHTTCCSEEEESCCCTTCHHHHHHHHTTCCEEEESCCCSSGGGGSCEEEECHHHHHH---HHHHHHHHHCCS
T ss_pred HHHHHHHHHHhCCcCEEEEcCcccChHHHHHHHhCCCCEEEECCCCccccCCceEEecCcHHHHH---HHHHHHHHcCCc
Confidence 33456677777888888776543 466778889999998876543322 22222222333333 245566778986
No 59
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=33.20 E-value=1.3e+02 Score=29.34 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=49.8
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL--DTKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREK 203 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K 203 (639)
+-.+++..++.. .+-....+..+...+++-+|+... +++..+.+.+.|+|++............+-..+....+..
T Consensus 57 g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~- 134 (305)
T 3huu_A 57 GYSTRMTVSENS-GDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQ- 134 (305)
T ss_dssp TCEEEECCCSSH-HHHHHHHHHHHHTTCCSEEEESSCBTTCHHHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHHHH-
T ss_pred CCEEEEEeCCCC-hHHHHHHHHHHHhCCCCEEEEeCCcCCcHHHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHHHH-
Confidence 334444333322 233355667777778888877754 3567788889999998876543221122222233333332
Q ss_pred HHHHHHHHhcCCc
Q 036925 204 AILIDSVLPFGFE 216 (639)
Q Consensus 204 ~~vl~~lL~~Gy~ 216 (639)
++..|++.|+.
T Consensus 135 --a~~~L~~~G~~ 145 (305)
T 3huu_A 135 --LTQYLYHLGHR 145 (305)
T ss_dssp --HHHHHHHTTCC
T ss_pred --HHHHHHHCCCC
Confidence 45667788885
No 60
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.15 E-value=43 Score=27.39 Aligned_cols=49 Identities=12% Similarity=0.352 Sum_probs=36.8
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC----c-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS----M-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~----~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|-.+.-+++.. . .+ +|-.|.+.+.|++.-+.+.
T Consensus 25 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 79 (100)
T 2do4_A 25 LPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMD 79 (100)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhC
Confidence 799999999999999988765555521 1 23 6888999988887666654
No 61
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=33.09 E-value=44 Score=27.82 Aligned_cols=49 Identities=18% Similarity=0.448 Sum_probs=35.9
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEe---C--Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINF---S--SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~---~--~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...|+++|.+.++.|-.+.=+++ . +. .+ +|-.|.+.+.|++--+.+.
T Consensus 27 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 82 (99)
T 4fxv_A 27 LPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN 82 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC
Confidence 8999999999999998876554444 1 22 22 6888999988876655554
No 62
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=32.77 E-value=32 Score=29.16 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=40.9
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
|+...|+++|++++..|-.++=+++--.++ +|.-|.+.++|++--+.|.
T Consensus 15 L~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln 64 (89)
T 2wbr_A 15 LTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALN 64 (89)
T ss_dssp CCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhc
Confidence 789999999999999888877777755566 6999999988887777665
No 63
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=32.42 E-value=3e+02 Score=26.14 Aligned_cols=86 Identities=13% Similarity=0.110 Sum_probs=49.4
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC----HHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD----TKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGR 201 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD----~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~ 201 (639)
+-.+++..++.. .+-..+-++.+...+++-+++...| .+..+.+.+.|+|++........ ...+-..+..+.+.
T Consensus 35 g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~-~~~~V~~D~~~~g~ 112 (291)
T 3l49_A 35 GGTAIALDAGRN-DQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTATPH-AINNTTSNNYSIGA 112 (291)
T ss_dssp TCEEEEEECTTC-HHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCCTT-CSEEEEECHHHHHH
T ss_pred CCEEEEEcCCCC-HHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCCCC-cCceEecChHHHHH
Confidence 334444444432 2334556677777899988888877 45567778899999887654322 11121223334433
Q ss_pred hHHHHHHHHHh--cCCc
Q 036925 202 EKAILIDSVLP--FGFE 216 (639)
Q Consensus 202 ~K~~vl~~lL~--~Gy~ 216 (639)
. +...+++ .|+.
T Consensus 113 ~---~~~~l~~~~~g~~ 126 (291)
T 3l49_A 113 E---LALQMVADLGGKG 126 (291)
T ss_dssp H---HHHHHHHHHTTCE
T ss_pred H---HHHHHHHHcCCCc
Confidence 3 3455566 6774
No 64
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=32.24 E-value=54 Score=33.76 Aligned_cols=116 Identities=13% Similarity=0.258 Sum_probs=66.8
Q ss_pred CCCccCC--CCCCCCCCcccchHHHHHHHhc--CCCeE-EEEEcchhhHHHHHHHHHHHHHc---CCC-eEEEEEeCHHH
Q 036925 96 KPIWEVP--QTKRLPSLKSFQLTKELVEQRV--QDNII-IMTFGNYAFMDFILNWVQRLTDL---GLS-NILVGALDTKL 166 (639)
Q Consensus 96 ~~~w~~p--~~~~~P~~~~~~L~r~L~~~~A--~d~tV-IVT~~N~ay~df~~NWl~sl~r~---Gv~-n~lVvAlD~~t 166 (639)
..+|.-| -.. ..+++++++.- .|=|| ++.++-..|..|+..+++|..+. |.+ ++.|++-+.+.
T Consensus 31 ~T~WlAPivWeg--------tf~~~il~~~y~~~n~tIGl~vfA~GkY~~fl~~Fl~SAek~Fm~g~~V~YYVFTD~~~~ 102 (298)
T 3ioh_A 31 VTPWLAPIVWEG--------TFNIDILNEQFRLQNTTIGLTVFAIKKYVAFLKLFLETAEKHFMVGHRVHYYVFTDQPAA 102 (298)
T ss_dssp BCTTSCBEECTT--------SCCHHHHHHHHHHTTCEEEEEEEECGGGGGGHHHHHHHHHHHBSTTSEEEEEEEESCGGG
T ss_pred ccCCcCcEeEcC--------cCCHHHHHHHHHHhCCcEEEEEEEeCcHHHHHHHHHHhHHHhccCCceEEEEEEeCChhh
Confidence 5678888 222 23456766643 34444 34456677888999999999887 543 46666554432
Q ss_pred HHHHH---hCCCCeEecCCCCCcCccCCCChHHHHHHHhHHHHHHHHHh----cCCc-eEeeecceeEecC
Q 036925 167 VKALY---WKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKAILIDSVLP----FGFE-LLMCDTDMVWLKN 229 (639)
Q Consensus 167 ~~~c~---~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~vl~~lL~----~Gy~-VL~sDvDVVWlrD 229 (639)
.-... .+.+.++... ....|...+..|..++....+ .-+| +++.|+|+++..+
T Consensus 103 vP~v~l~~~r~~~V~~v~----------~~~~Wqd~sm~Rm~~i~~~~~~~~~~EvDyLfc~dvd~~F~~~ 163 (298)
T 3ioh_A 103 VPRVTLGTGRQLSVLEVR----------AYKRWQDVSMRRMEMISDFCERRFLSEVDYLVCVDVDMEFRDH 163 (298)
T ss_dssp SCCCCCCTTEEEEEEECC----------CCSSHHHHHHHHHHHHHHHHHHTHHHHCSEEEEEESSEEECSC
T ss_pred CCccccCCCCeEEEEEec----------cccCCccccHHHHHHHHHHHHHHHhhcCCEEEEecCCCeeccC
Confidence 21100 0111122111 234566666677777766554 3356 7788999988765
No 65
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=32.06 E-value=48 Score=27.32 Aligned_cols=50 Identities=20% Similarity=0.309 Sum_probs=36.9
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc-----cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM-----KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~-----~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.|+.|-.+.-+++..- .+ +|--|.+.+.|++--+.+..
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 78 (105)
T 2dnh_A 23 LNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHG 78 (105)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcC
Confidence 7999999999999999876555544211 23 68889999888866665653
No 66
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=32.03 E-value=37 Score=29.01 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=37.5
Q ss_pred eCC-CCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPR-HSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~-~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||. ..+++||.+++++|-.+.=+.+-.-.+ +|--|.+.+.|++--+.++
T Consensus 23 Lp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~ 73 (102)
T 1x4d_A 23 FQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYT 73 (102)
T ss_dssp CCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHc
Confidence 899 999999999999998766555533333 7888999988876655554
No 67
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=32.00 E-value=51 Score=25.74 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=36.0
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.+..+.-+++. +. .+ +|--|.+.+.|++.-+.+.
T Consensus 9 lp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 9 LNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp CCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc
Confidence 79999999999999998765544442 11 22 6888999988887666554
No 68
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=31.98 E-value=51 Score=25.97 Aligned_cols=49 Identities=14% Similarity=0.262 Sum_probs=36.9
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.+..+.-+++. +. .+ +|--|.+.+.|++.-+.+.
T Consensus 14 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 69 (87)
T 3bs9_A 14 LSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 69 (87)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 79999999999999998876555552 11 22 5788999988887666665
No 69
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=31.90 E-value=2.1e+02 Score=27.04 Aligned_cols=87 Identities=9% Similarity=0.177 Sum_probs=49.4
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL--DTKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREK 203 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K 203 (639)
+-.+++..++.. .+-..+.++.+...+++-+++... +++..+.+.+.|+|++............+-..+..+.+..
T Consensus 33 g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~- 110 (275)
T 3d8u_A 33 GYQLLLGYSDYS-IEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEASNTPVLEIAELSSKASYLNIGVDHFEVGKA- 110 (275)
T ss_dssp SCEECCEECTTC-HHHHHHHHHHHHTSCCCCEEEESSCCCHHHHHHHHHHTCCEEEESSSCSSSSSEEECBCHHHHHHH-
T ss_pred CCEEEEEcCCCC-HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEeeccCCCCCCEEEEChHHHHHH-
Confidence 334555444322 233345667777778888887765 4567778888899988775433221221212233333332
Q ss_pred HHHHHHHHhcCCc
Q 036925 204 AILIDSVLPFGFE 216 (639)
Q Consensus 204 ~~vl~~lL~~Gy~ 216 (639)
+...+++.|+.
T Consensus 111 --a~~~L~~~G~~ 121 (275)
T 3d8u_A 111 --CTRHLIEQGFK 121 (275)
T ss_dssp --HHHHHHTTTCC
T ss_pred --HHHHHHHCCCC
Confidence 45667788975
No 70
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=31.75 E-value=49 Score=26.06 Aligned_cols=49 Identities=18% Similarity=0.501 Sum_probs=37.7
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC-------ccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS-------MKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~-------~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|..+.-+++.. ..+ +|--|.+.+.|++--+.+.
T Consensus 12 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (88)
T 4a8x_A 12 LTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD 68 (88)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC
Confidence 799999999999999998776666621 233 6888999988886666554
No 71
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.42 E-value=52 Score=27.68 Aligned_cols=49 Identities=16% Similarity=0.415 Sum_probs=36.8
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC----ccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS----MKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~----~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|..+.-+++.. ..+ +|-.|.+.+.|++.-+.+.
T Consensus 37 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~ 90 (109)
T 2err_A 37 IPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLH 90 (109)
T ss_dssp CCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcC
Confidence 799999999999999987765555531 133 5778999988887666554
No 72
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.22 E-value=41 Score=27.36 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=36.2
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC---C-----c-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS---S-----M-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~---~-----~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|-.+.-+++. . . .+ +|--|.+.+.|++--+.+.
T Consensus 13 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~ 71 (98)
T 2cpf_A 13 LNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ 71 (98)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC
Confidence 89999999999999998876555553 1 1 22 6888999988876555554
No 73
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=31.20 E-value=52 Score=27.11 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=37.4
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc------cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM------KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~------~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|-.+.-+++..- .+ +|--|.+.+.+++.-+.+.
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (105)
T 1x5u_A 23 LDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD 78 (105)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC
Confidence 7999999999999999987766666321 12 5778999988886666554
No 74
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=31.12 E-value=54 Score=28.01 Aligned_cols=49 Identities=16% Similarity=0.371 Sum_probs=36.8
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc-----cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM-----KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~-----~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|..+.-+.+..- .+ +|-.|.+.+.|++--+.+.
T Consensus 15 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~ 69 (116)
T 2fy1_A 15 LNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69 (116)
T ss_dssp CTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 8999999999999999877666555321 23 6888999988886655554
No 75
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.12 E-value=49 Score=26.53 Aligned_cols=48 Identities=8% Similarity=0.165 Sum_probs=37.4
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccccccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKNAFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|-.+.-+++..- -+|-.|.+.+.|++--+.+.
T Consensus 17 lp~~~t~~~l~~~F~~~G~v~~~~~~~~-~afV~f~~~~~a~~A~~~l~ 64 (90)
T 2dnp_A 17 VSAACTSQELRSLFERRGRVIECDVVKD-YAFVHMEKEADAKAAIAQLN 64 (90)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEECSS-CEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEEEECC-EEEEEECCHHHHHHHHHHhC
Confidence 8999999999999999888666665421 36788999988887666555
No 76
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=30.66 E-value=3.5e+02 Score=25.58 Aligned_cols=87 Identities=9% Similarity=0.080 Sum_probs=48.0
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHh-CCCCeEecCCCCCcCccCCCChHHHHHHHh
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL--DTKLVKALYW-KGVPVFDMGSHMSTMDVGWGSPTFHKMGRE 202 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~-~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~ 202 (639)
+-.+++...+.. .+-..+.++.+...+++-+|+... +.+..+.+.+ .|+|++............+-..+..+.+.
T Consensus 51 g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~- 128 (296)
T 3brq_A 51 GRQLLLADGKHS-AEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSF- 128 (296)
T ss_dssp TCEEEEECCTTS-HHHHHHHHHHHHHTTCSEEEEECSSSCHHHHHHHHHTCSSCEEEESCCCSSSGGGEECCCHHHHHH-
T ss_pred CCEEEEEeCCCC-HHHHHHHHHHHHhcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEccccCCCCCCEEEEchHHHHH-
Confidence 344554433322 223345566666778888887765 4567778888 89998877643322111111123333333
Q ss_pred HHHHHHHHHhcCCc
Q 036925 203 KAILIDSVLPFGFE 216 (639)
Q Consensus 203 K~~vl~~lL~~Gy~ 216 (639)
.+...+++.|+.
T Consensus 129 --~a~~~l~~~G~~ 140 (296)
T 3brq_A 129 --NAVAELINAGHQ 140 (296)
T ss_dssp --HHHHHHHHTTCC
T ss_pred --HHHHHHHHCCCc
Confidence 234566677875
No 77
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=30.61 E-value=63 Score=27.10 Aligned_cols=50 Identities=12% Similarity=0.317 Sum_probs=38.0
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC---Cccc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS---SMKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~---~~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|..+.-+++. ...+ +|--|.+.+.|++--+.+..
T Consensus 16 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 69 (115)
T 3lqv_A 16 LPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSG 69 (115)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCC
Confidence 79999999999999998877666662 2233 68889999888766665543
No 78
>2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A*
Probab=30.17 E-value=32 Score=35.11 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhCCeeecCCc-ceeccc
Q 036925 424 NYQMKQIRTALAIASVLNRTLVMPPL-WCRLDR 455 (639)
Q Consensus 424 ~~ql~q~r~alAlA~~l~RtLVlP~~-~C~cd~ 455 (639)
-.||-|+-.|+++|..+||+|++-.. +|+|+.
T Consensus 16 GNqm~~~a~a~~~A~~t~r~l~vd~~~~~y~~~ 48 (330)
T 2hhc_A 16 GDCLWSLASAWSYAQRTGRTLVIDWRGSCYVEQ 48 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEECBTCTTCSS
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEECCCcccCCC
Confidence 44899999999999999999988644 577765
No 79
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.15 E-value=68 Score=26.09 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=35.7
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHH
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRR 592 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~ 592 (639)
||...++++|.+.|+.|..+.-+++- +. .+ +|--|.+.+.+++.-+
T Consensus 18 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 18 IPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp CCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH
Confidence 79999999999999999877666662 11 23 6888999988876655
No 80
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=29.70 E-value=61 Score=25.37 Aligned_cols=49 Identities=14% Similarity=0.316 Sum_probs=37.4
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC----Cc--cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS----SM--KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~----~~--~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.+++|..+.-+++. +- .+ +|--|.+.+.|++--+.+.
T Consensus 15 l~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 70 (85)
T 3mdf_A 15 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 70 (85)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC
Confidence 89999999999999999877666662 11 22 6888999988876665554
No 81
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=29.57 E-value=52 Score=28.48 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=37.7
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC------ccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS------MKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~------~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.|+.|..+.-+++.. ..+ +|-.|.+.+.|++.-+.+.
T Consensus 71 lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 126 (140)
T 2ku7_A 71 LAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 126 (140)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 899999999999999998877776621 123 6888999988886655554
No 82
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.31 E-value=64 Score=26.35 Aligned_cols=50 Identities=12% Similarity=0.303 Sum_probs=37.9
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC------ccc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS------MKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~------~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.|+.|-.+.-+++.. ..+ +|--|.+.+.|++--+.+..
T Consensus 20 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 76 (102)
T 1x5s_A 20 LSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNG 76 (102)
T ss_dssp CCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCC
Confidence 799999999999999887776666632 122 68889999888876666553
No 83
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.04 E-value=52 Score=27.54 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=36.8
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccccccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKNAFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|-.+.-+++..---+|--|.+.+.|++--+.+.
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~ 71 (108)
T 1x4c_A 23 LPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLD 71 (108)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHC
Confidence 8999999999999999987665555322226888999888876555554
No 84
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=29.01 E-value=53 Score=26.52 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=38.5
Q ss_pred eCCCCCHHHHH----HhhcccCCceEEEeCC---ccc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFK----TVFSSFKDVKVINFSS---MKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~----~~l~~~~~~~vl~~~~---~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|. +.++.|..+.-+++.. ..+ +|--|.+.+.|++.-+.+..
T Consensus 16 Lp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 16 LNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp CCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 79999999999 9999998877777652 123 67789999888876666653
No 85
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=28.98 E-value=42 Score=26.51 Aligned_cols=45 Identities=24% Similarity=0.337 Sum_probs=33.2
Q ss_pred eCCCCCHHHHHHhhccc----C-------CceEEEeCCccc-cccCCCcHHHHHHHH
Q 036925 547 FPRHSSEETFKTVFSSF----K-------DVKVINFSSMKN-AFLNFTDKTREERFR 591 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~----~-------~~~vl~~~~~~~-~f~gf~d~~~~~~f~ 591 (639)
||...++++|.+.++.+ . .+.-+++..-.+ +|--|.+.+.+++.-
T Consensus 14 Lp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~ 70 (87)
T 2hzc_A 14 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM 70 (87)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH
Confidence 79999999999999988 4 444444443344 688899998777554
No 86
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=28.93 E-value=54 Score=26.38 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=36.2
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC---Cc--cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS---SM--KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~---~~--~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.+-.+.-+++. +- .+ +|--|.+.+.+++--+.+.
T Consensus 24 lp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 78 (95)
T 2ywk_A 24 LEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLN 78 (95)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 79999999999999998766555542 11 22 5788999988887666554
No 87
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=28.62 E-value=1e+02 Score=24.70 Aligned_cols=50 Identities=12% Similarity=0.278 Sum_probs=34.4
Q ss_pred eCCCCCHHHHHHhhcccC--C---ceEEEe--CCc-cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFK--D---VKVINF--SSM-KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~--~---~~vl~~--~~~-~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.+. . ++++.= ++. .+ +|--|.+.+.+++--+.+..
T Consensus 9 L~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g 67 (90)
T 3p5t_L 9 LTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK 67 (90)
T ss_dssp CCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG
T ss_pred CCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC
Confidence 788999999999998877 3 444432 222 23 68899999888866555553
No 88
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=27.96 E-value=58 Score=28.26 Aligned_cols=49 Identities=16% Similarity=0.379 Sum_probs=38.5
Q ss_pred EEeCCCCCHHHHHHhhcccCCceEEEeCCccccccCCCcHHHHHHHHHHh
Q 036925 545 LRFPRHSSEETFKTVFSSFKDVKVINFSSMKNAFLNFTDKTREERFRRRV 594 (639)
Q Consensus 545 ~~~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~f~gf~d~~~~~~f~~~~ 594 (639)
+.+|+.++..||.+++++|.++. |.+-+-.-+|..|.+++.+..--+.+
T Consensus 21 l~FP~ewKt~DI~~lFs~fggv~-I~WidDTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 21 VTFPKEWKTSDLYQLFSAFGNIQ-ISWIDDTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp EECCTTCCHHHHHHHHTTTCSCC-CEEEETTEEEEECSCHHHHHHHHHHH
T ss_pred EeCChhhhhHHHHHHhhccCCEE-EEEEcCCeEEEEecCHHHHHHHHHhc
Confidence 46899999999999999999774 44445556899999998886544444
No 89
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=27.84 E-value=34 Score=26.30 Aligned_cols=44 Identities=18% Similarity=0.511 Sum_probs=32.5
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHH
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERF 590 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f 590 (639)
||...++++|.+.++.+..+.-+++. +. .+ +|-.|.+.+.+++-
T Consensus 7 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A 57 (75)
T 1iqt_A 7 LSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI 57 (75)
T ss_dssp CCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHH
Confidence 78999999999999988776655552 11 22 57788888777644
No 90
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=27.80 E-value=55 Score=26.97 Aligned_cols=50 Identities=22% Similarity=0.479 Sum_probs=37.7
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC-----c-cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS-----M-KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~-----~-~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|-.+.-+++.. . .+ +|--|.+.+.|++--+.+..
T Consensus 21 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 77 (106)
T 2dgp_A 21 IPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHE 77 (106)
T ss_dssp CCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 799999999999999887766666532 1 23 68889999888876666653
No 91
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.62 E-value=53 Score=28.64 Aligned_cols=48 Identities=15% Similarity=0.280 Sum_probs=36.1
Q ss_pred eCCC-CCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHh
Q 036925 547 FPRH-SSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRV 594 (639)
Q Consensus 547 ~~~~-~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~ 594 (639)
||.. .++++|.+++++|-.+.=+.+-...+ +|--|.+.+.|++--+.+
T Consensus 33 Lp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l 82 (112)
T 1x4f_A 33 LPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHC 82 (112)
T ss_dssp CCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHh
Confidence 7886 99999999999988765555533344 799999998777655544
No 92
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.58 E-value=68 Score=26.56 Aligned_cols=49 Identities=22% Similarity=0.358 Sum_probs=38.2
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.|+.|-.+.-+++. +. .+ +|--|.+.+.|++.-+.+.
T Consensus 23 Lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 23 LSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 89999999999999999877666663 11 23 6888999988887766664
No 93
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=27.43 E-value=29 Score=28.45 Aligned_cols=48 Identities=17% Similarity=0.412 Sum_probs=34.0
Q ss_pred eCCCCCHHHHHHhhcccC----CceEEEeC--Cc-cc-cccCCCcHHHHHHHHHHh
Q 036925 547 FPRHSSEETFKTVFSSFK----DVKVINFS--SM-KN-AFLNFTDKTREERFRRRV 594 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~----~~~vl~~~--~~-~~-~f~gf~d~~~~~~f~~~~ 594 (639)
||...|+++|++.++++- +++|+.=. +. .+ +|-.|.+.+.|++.-+.+
T Consensus 9 Lp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 9 LPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 899999999999998764 45444322 22 23 688899998887654444
No 94
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=27.09 E-value=5.3e+02 Score=26.80 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=25.8
Q ss_pred HHHHHHHhCC-CCeEecCCCCCcCccCCCChHHHHHHHhHHHHHHHHHhcCCceEeeecceeEecCCc
Q 036925 165 KLVKALYWKG-VPVFDMGSHMSTMDVGWGSPTFHKMGREKAILIDSVLPFGFELLMCDTDMVWLKNPL 231 (639)
Q Consensus 165 ~t~~~c~~~G-vpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~vl~~lL~~Gy~VL~sDvDVVWlrDPl 231 (639)
.+.+.+-+.| +|++.-..........+|+.+.. ..++...|++..=++++|+|=|+-.||.
T Consensus 119 ~~i~~LL~~g~IPIv~end~v~~~el~~gd~D~l------Aa~vA~~l~Ad~LiilTDVdGvy~~dP~ 180 (367)
T 2j5v_A 119 DTLRALLDNNVVPVINENDAVATAEIKVGDNDNL------SALAAILAGADKLLLLTDQKGLYTADPR 180 (367)
T ss_dssp HHHHHHHHTTCEEEEEECTTSCCGGGCCCSHHHH------HHHHHHHHTCSEEEEEECC---------
T ss_pred HHHHHHHHCCCEEEECCCCceecccccCCCHHHH------HHHHHHhcCCCEEEEeecCCceECCCCC
Confidence 3444444555 46664332222223445655543 2233445556556788888888877773
No 95
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.06 E-value=68 Score=26.01 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=37.6
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|-.+.-+++. +. .+ +|--|.+.+.|++--+.+.
T Consensus 16 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 71 (99)
T 1whw_A 16 LSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVD 71 (99)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhC
Confidence 79999999999999999877666663 21 23 6888999988886655554
No 96
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=26.73 E-value=25 Score=29.42 Aligned_cols=50 Identities=14% Similarity=0.364 Sum_probs=36.0
Q ss_pred eCCCCCHHHHHHhhcccCCceE--EEe-----CCc-cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKV--INF-----SSM-KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~v--l~~-----~~~-~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||+..|+++|.+.|++|-.+.| +++ ++. ++ +|--|.+.+.|++--+.++.
T Consensus 17 L~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng 75 (95)
T 2lkz_A 17 IAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQS 75 (95)
T ss_dssp CCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHS
T ss_pred CCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcC
Confidence 8999999999999999874222 232 122 23 58899999888877666654
No 97
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=26.65 E-value=3.2e+02 Score=26.87 Aligned_cols=86 Identities=9% Similarity=0.063 Sum_probs=45.7
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC---HHHHHHHHhCCCCeEecCCCCCcCccCC-CChHHHHHHH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD---TKLVKALYWKGVPVFDMGSHMSTMDVGW-GSPTFHKMGR 201 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD---~~t~~~c~~~Gvpcf~~~s~~~~~~~~~-Gs~~f~~m~~ 201 (639)
+-.+++..++.. .+--...++.+...+++-+|+...+ +...+.+.+.|+|++............+ +...+ ..+.
T Consensus 93 g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~-~~~~ 170 (338)
T 3dbi_A 93 GRQLLLADGKHS-AEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVWCDHK-QTSF 170 (338)
T ss_dssp TCEEEEEECTTS-HHHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSCCSSSGGGEECBCHH-HHHH
T ss_pred CCEEEEEeCCCC-hHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCCCCCCCCCEEEEChH-HHHH
Confidence 334444443322 2333445666777788887776643 2345566778899877654432222211 22233 3332
Q ss_pred hHHHHHHHHHhcCCc
Q 036925 202 EKAILIDSVLPFGFE 216 (639)
Q Consensus 202 ~K~~vl~~lL~~Gy~ 216 (639)
..+..|++.|+.
T Consensus 171 ---~a~~~L~~~G~~ 182 (338)
T 3dbi_A 171 ---NAVAELINAGHQ 182 (338)
T ss_dssp ---HHHHHHHHTTCC
T ss_pred ---HHHHHHHHCCCC
Confidence 245667778875
No 98
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.45 E-value=1.3e+02 Score=24.45 Aligned_cols=50 Identities=16% Similarity=0.377 Sum_probs=37.8
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC-----c-cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS-----M-KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~-----~-~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.|+.|..+.-+++.. . .+ +|--|.+.+.|++--+.+..
T Consensus 21 Lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 77 (103)
T 2dnm_A 21 LTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDG 77 (103)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCC
Confidence 799999999999999998876666631 1 22 68888898888766665543
No 99
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=26.20 E-value=68 Score=27.27 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=36.8
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCccccccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMKNAFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.+-.+.-+.+-.---+|--|.+.+.|++--+.|.
T Consensus 24 Lp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~ 72 (115)
T 3beg_B 24 LPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLD 72 (115)
T ss_dssp CCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhC
Confidence 8999999999999999987665555322226888899888876655554
No 100
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=26.19 E-value=62 Score=26.29 Aligned_cols=43 Identities=16% Similarity=0.386 Sum_probs=33.9
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC-ccc-cccCCCcHHHHHH
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS-MKN-AFLNFTDKTREER 589 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~-~~~-~f~gf~d~~~~~~ 589 (639)
||...|+++|.+.++.|..+.=+++.. ..+ +|-.|.+.+.|++
T Consensus 19 Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 19 CTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS 63 (89)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH
Confidence 899999999999999998766666532 234 5888999987773
No 101
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.15 E-value=59 Score=26.68 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=36.6
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC----ccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS----MKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~----~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|-.+.-+++.. -.+ +|-.|.+.+.|++--+.+.
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cqi_A 23 LSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMN 76 (103)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHT
T ss_pred CCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhC
Confidence 799999999999999987765554421 123 5888999988887666554
No 102
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=26.13 E-value=53 Score=25.19 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=32.8
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHH
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERF 590 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f 590 (639)
||...++++|.+.++.+..+.-+++. +. .+ +|-.|.+.+.+++.
T Consensus 7 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a 57 (75)
T 2mss_A 7 LSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV 57 (75)
T ss_dssp CCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHH
Confidence 79999999999999998776655552 11 22 57789998777654
No 103
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.88 E-value=53 Score=25.21 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=34.1
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHh
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRV 594 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~ 594 (639)
||...++++|.+.++.+..+.-+++. +. .+ +|-.|.+.+.+++.-+.+
T Consensus 8 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 62 (77)
T 1uaw_A 8 LSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62 (77)
T ss_dssp CCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhC
Confidence 79999999999999987655444431 11 22 688899998887655544
No 104
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=25.81 E-value=1.6e+02 Score=28.69 Aligned_cols=85 Identities=13% Similarity=0.148 Sum_probs=48.9
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeCH--H-HHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHh
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALDT--K-LVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGRE 202 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD~--~-t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~ 202 (639)
+-.+++..++..- +--...+..+...+++-+|+...+. + ..+.+.+ |+|++........ ...+-..+..+.+..
T Consensus 45 g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~-~iPvV~i~~~~~~-~~~~V~~D~~~~g~~ 121 (303)
T 3kke_A 45 STDVLLGQIDAPP-RGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVLE-GVPAVTINSRVPG-RVGSVILDDQKGGGI 121 (303)
T ss_dssp TCCEEEEECCSTT-HHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHHT-TSCEEEESCCCTT-CCCEEEECHHHHHHH
T ss_pred CCEEEEEeCCCCh-HHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHhC-CCCEEEECCcCCC-CCCEEEECcHHHHHH
Confidence 4445555544322 2234566677777888888876543 3 6777778 9998887654433 222222233334332
Q ss_pred HHHHHHHHHhcCCc
Q 036925 203 KAILIDSVLPFGFE 216 (639)
Q Consensus 203 K~~vl~~lL~~Gy~ 216 (639)
.+..|++.|+.
T Consensus 122 ---a~~~L~~~G~~ 132 (303)
T 3kke_A 122 ---ATEHLITLGHS 132 (303)
T ss_dssp ---HHHHHHHTTCC
T ss_pred ---HHHHHHHCCCC
Confidence 45566778886
No 105
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=25.80 E-value=2.4e+02 Score=27.03 Aligned_cols=68 Identities=9% Similarity=0.135 Sum_probs=41.0
Q ss_pred HHHHHHcCCCeEEEEEe--CHHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhHHHHHHHHHhcCCc
Q 036925 146 VQRLTDLGLSNILVGAL--DTKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKAILIDSVLPFGFE 216 (639)
Q Consensus 146 l~sl~r~Gv~n~lVvAl--D~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~vl~~lL~~Gy~ 216 (639)
+..+...+++-+|+... +.+..+.+.+.|+|++............+-..+..+.+.. ++..|++.|+.
T Consensus 59 ~~~l~~~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g~~---a~~~L~~~G~~ 128 (288)
T 3gv0_A 59 RYILETGSADGVIISKIEPNDPRVRFMTERNMPFVTHGRSDMGIEHAFHDFDNEAYAYE---AVERLAQCGRK 128 (288)
T ss_dssp HHHHHHTCCSEEEEESCCTTCHHHHHHHHTTCCEEEESCCCSSCCCEEEEECHHHHHHH---HHHHHHHTTCC
T ss_pred HHHHHcCCccEEEEecCCCCcHHHHHHhhCCCCEEEECCcCCCCCCcEEEeCcHHHHHH---HHHHHHHCCCC
Confidence 33455678888877654 3467788889999998876543222222222233333332 46667788986
No 106
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.67 E-value=69 Score=26.76 Aligned_cols=49 Identities=12% Similarity=0.077 Sum_probs=35.7
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEe---CCc--cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINF---SSM--KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~---~~~--~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|-.+.-+++ .+- .+ +|--|.+.+.+++--+.+.
T Consensus 23 lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 77 (114)
T 2do0_A 23 LDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 77 (114)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 7999999999999998876544433 221 22 5888999988886666554
No 107
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=25.65 E-value=71 Score=28.49 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=37.1
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.|+.|-.+.-+++. +. .+ +|--|.+.+.|++.-+.+.
T Consensus 47 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 102 (156)
T 1h2v_Z 47 LSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 79999999999999998876655551 22 22 5888999988887666554
No 108
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=25.58 E-value=86 Score=27.40 Aligned_cols=49 Identities=16% Similarity=0.379 Sum_probs=37.6
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.|+.|..+.-+++. +. .+ +|-.|.+.+.|++.-+.+.
T Consensus 54 Lp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln 109 (129)
T 2kxn_B 54 LSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 109 (129)
T ss_dssp CTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 89999999999999998877666652 11 23 6888999988887666554
No 109
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.57 E-value=57 Score=26.57 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=35.8
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEe-CCccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINF-SSMKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~-~~~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|..+.+-.. ....+ +|-.|.+.+.|++--+.+.
T Consensus 27 L~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 77 (97)
T 2e5j_A 27 LPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQ 77 (97)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhC
Confidence 7999999999999999887643222 22233 6888999988876655554
No 110
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=25.20 E-value=1.2e+02 Score=30.47 Aligned_cols=93 Identities=11% Similarity=0.089 Sum_probs=55.1
Q ss_pred HHhcCCCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHH
Q 036925 121 EQRVQDNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL--DTKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHK 198 (639)
Q Consensus 121 ~~~A~d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~ 198 (639)
++.+.+-.+++..++....+-....++.+...+++-+|+... +.+..+.+.+.|+|++............+-..+...
T Consensus 96 ~~~a~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~ 175 (366)
T 3h5t_A 96 AQAAGDTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVAKGDPHIDAIRARGLPAVIADQPAREEGMPFIAPNNRK 175 (366)
T ss_dssp HHHSSSCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESCCTTCHHHHHHHHHTCCEEEESSCCSCTTCCEEEECHHH
T ss_pred HHHHhhCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecCCCChHHHHHHHHCCCCEEEECCccCCCCCCEEEeChHH
Confidence 344556667777666332111234566677788988888765 456778888899999887653322222222223333
Q ss_pred HHHhHHHHHHHHHhcCCc
Q 036925 199 MGREKAILIDSVLPFGFE 216 (639)
Q Consensus 199 m~~~K~~vl~~lL~~Gy~ 216 (639)
.+. .++..|+++|+.
T Consensus 176 ~~~---~a~~~L~~~G~r 190 (366)
T 3h5t_A 176 AIA---PAAQALIDAGHR 190 (366)
T ss_dssp HTH---HHHHHHHHTTCC
T ss_pred HHH---HHHHHHHHCCCC
Confidence 333 356677788987
No 111
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=25.15 E-value=82 Score=26.83 Aligned_cols=49 Identities=12% Similarity=0.330 Sum_probs=37.8
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.|+.|-.+.-+++. +. .+ +|--|.+.+.|++--+.+.
T Consensus 30 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 85 (126)
T 3ex7_B 30 VHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 85 (126)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 79999999999999999887766662 11 22 5888999988887666554
No 112
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=25.11 E-value=86 Score=25.99 Aligned_cols=49 Identities=12% Similarity=0.325 Sum_probs=37.7
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc------cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM------KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~------~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.|+.|..+.-+++..- .+ +|-.|.+.+.|++.-+.+.
T Consensus 34 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 89 (110)
T 1oo0_B 34 IHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 89 (110)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 7999999999999999988776666311 23 5778999988887666554
No 113
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=24.94 E-value=2.9e+02 Score=27.23 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=46.1
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL--DTKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREK 203 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K 203 (639)
+-.+++..++.. .+-..+.++.+...+++-+|+... +.+..+.+.+.|+|++............+-..+....+.
T Consensus 93 g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~-- 169 (332)
T 2o20_A 93 KYNMILANSDND-VEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSVNIDYHLAAY-- 169 (332)
T ss_dssp TCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEECSSCCCHHHHHHHHHHCCCEEEESCCCTTSCSCEEECCHHHHHH--
T ss_pred CCEEEEEECCCC-hHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEccccCCCCCCEEEeChHHHHH--
Confidence 344555544332 222344566666677887777653 456677777788998776543222111111122333332
Q ss_pred HHHHHHHHhcCCc
Q 036925 204 AILIDSVLPFGFE 216 (639)
Q Consensus 204 ~~vl~~lL~~Gy~ 216 (639)
..+..|++.|+.
T Consensus 170 -~a~~~L~~~G~~ 181 (332)
T 2o20_A 170 -QSTKKLIDSGNK 181 (332)
T ss_dssp -HHHHHHHHTTCS
T ss_pred -HHHHHHHHCCCC
Confidence 245566777875
No 114
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.88 E-value=69 Score=26.20 Aligned_cols=49 Identities=22% Similarity=0.390 Sum_probs=35.5
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|..+.-+++. +. .+ +|--|.+.+.|++--+.+.
T Consensus 16 lp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 71 (104)
T 1p1t_A 16 IPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN 71 (104)
T ss_dssp CCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS
T ss_pred CCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 79999999999999988765544442 11 23 6888999988876555544
No 115
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.48 E-value=82 Score=26.59 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=38.6
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC-------c-cc-cccCCCcHHHHHHHHHHhccccc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS-------M-KN-AFLNFTDKTREERFRRRVKRYVG 599 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~-------~-~~-~f~gf~d~~~~~~f~~~~~~~~~ 599 (639)
||...++++|.+.++.|-.+.+..... . .+ +|--|.+.+.|++--+.+..+.+
T Consensus 16 Lp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G 77 (114)
T 2dnl_A 16 LPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDG 77 (114)
T ss_dssp CCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCC
Confidence 899999999999999999888332221 1 23 68889999888876666643333
No 116
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.34 E-value=55 Score=27.61 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=36.4
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc------cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM------KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~------~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.|+.|-.+.-+++..- .+ +|-.|.+.+.|++.-+.+.
T Consensus 25 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~ 80 (116)
T 2cqd_A 25 LPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN 80 (116)
T ss_dssp CCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSS
T ss_pred CCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCC
Confidence 8999999999999999987766666321 22 6888999988876544443
No 117
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=24.30 E-value=74 Score=26.76 Aligned_cols=50 Identities=16% Similarity=0.400 Sum_probs=37.2
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|..+.-+++. +. .+ +|-.|.+.+.|++.-+.+..
T Consensus 34 Lp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g 90 (108)
T 2jrs_A 34 LHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 90 (108)
T ss_dssp CCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 79999999999999998876555542 11 22 68889999888876665543
No 118
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.19 E-value=67 Score=26.08 Aligned_cols=49 Identities=14% Similarity=0.343 Sum_probs=34.8
Q ss_pred eCCCCCHHHHHHhhcccCCce----EEEeC--Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVK----VINFS--SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~----vl~~~--~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.+..+. |+.-. +. .+ +|-.|.+.+.|++.-+.+.
T Consensus 17 Lp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 73 (99)
T 2div_A 17 LEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN 73 (99)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHc
Confidence 799999999999999876544 33322 12 22 6888999988886655554
No 119
>2e6i_A Tyrosine-protein kinase ITK/TSK; BTK, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.99 E-value=78 Score=25.25 Aligned_cols=39 Identities=31% Similarity=0.750 Sum_probs=26.4
Q ss_pred cee-eecc--CCCCceeeeecccCCCCCCccCCCCCCCCCCCCC
Q 036925 599 GIW-CCVD--SHTPGHIYYDMYWDEKPDWKPIPPQTPGDDHLPW 639 (639)
Q Consensus 599 ~~w-CC~~--~~~~g~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (639)
+.| ||.. ...+|+--|+-+-|. .=||+||...++-.|+|
T Consensus 23 GkW~CC~q~~k~a~GC~~~~~~~~~--~~kplPp~P~~~~rp~~ 64 (64)
T 2e6i_A 23 GKWRCCSQLEKLATGCAQYDPTKNA--SKKPLPPTPEDNRRPLW 64 (64)
T ss_dssp SSBSSSCCSCTTCCCCEECCSSSSS--CCCCCCCCCCCSCCCCC
T ss_pred CeECCCCCCCccCCCCcccccCCCc--ccCCCCcCccccccCCC
Confidence 345 6653 247999999987773 34889877555555776
No 120
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.68 E-value=66 Score=26.38 Aligned_cols=49 Identities=20% Similarity=0.412 Sum_probs=36.7
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|-.+.-+++. +. .+ +|--|.+.+.|++.-+.+.
T Consensus 23 lp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (103)
T 2cq0_A 23 LSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS 78 (103)
T ss_dssp CCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC
Confidence 79999999999999998776555552 11 22 6888999988886666554
No 121
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=23.60 E-value=1.5e+02 Score=28.75 Aligned_cols=86 Identities=9% Similarity=0.113 Sum_probs=49.9
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC--HHHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD--TKLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREK 203 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD--~~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K 203 (639)
+-.+++..++. .+-....+..+...+++-+|+...+ .+..+.+.+.|+|++............+-..+..+.+..
T Consensus 40 g~~~~~~~~~~--~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~- 116 (294)
T 3qk7_A 40 GLDLLLIPDEP--GEKYQSLIHLVETRRVDALIVAHTQPEDFRLQYLQKQNFPFLALGRSHLPKPYAWFDFDNHAGASL- 116 (294)
T ss_dssp TCEEEEEEECT--TCCCHHHHHHHHHTCCSEEEECSCCSSCHHHHHHHHTTCCEEEESCCCCSSCCEEEEECHHHHHHH-
T ss_pred CCEEEEEeCCC--hhhHHHHHHHHHcCCCCEEEEeCCCCChHHHHHHHhCCCCEEEECCCCCCCCCCEEEcChHHHHHH-
Confidence 44555555553 2223345566667788888877653 467788889999988876543222222212233333332
Q ss_pred HHHHHHHHhcCCc
Q 036925 204 AILIDSVLPFGFE 216 (639)
Q Consensus 204 ~~vl~~lL~~Gy~ 216 (639)
.+..|++.|+.
T Consensus 117 --a~~~L~~~G~~ 127 (294)
T 3qk7_A 117 --AVKRLLELGHQ 127 (294)
T ss_dssp --HHHHHHHTTCC
T ss_pred --HHHHHHHCCCc
Confidence 45567778986
No 122
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=23.50 E-value=81 Score=25.94 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=35.4
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEe---CC-c-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINF---SS-M-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~---~~-~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|..+.=+++ .+ . .+ +|--|.+.+.|++--+.+.
T Consensus 37 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 91 (107)
T 3ulh_A 37 LDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 91 (107)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 7999999999999998876544333 21 1 22 5888999988886666554
No 123
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=23.36 E-value=74 Score=27.80 Aligned_cols=49 Identities=18% Similarity=0.479 Sum_probs=37.1
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.+..+.-+++. +. .+ +|-.|.+.+.|++.-+.+.
T Consensus 10 lp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 65 (167)
T 1fxl_A 10 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 65 (167)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcC
Confidence 89999999999999998776555442 11 13 6888999998887766655
No 124
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.27 E-value=57 Score=26.30 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=35.1
Q ss_pred eCCCCCHHHHHHhhcccCCceEE-EeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVI-NFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl-~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|-.+.-+ ++. +. .+ +|--|.+.+.|++.-+.+.
T Consensus 13 Lp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 69 (96)
T 1x5t_A 13 LDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 69 (96)
T ss_dssp CCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC
Confidence 89999999999999988765333 331 11 22 6888999988886655554
No 125
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.19 E-value=84 Score=26.24 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=37.0
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC----Cc-cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS----SM-KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~----~~-~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++.|-.+.-+++. +. .+ +|--|.+.+.+++.-+.+..
T Consensus 33 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 88 (114)
T 1x5o_A 33 LPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNG 88 (114)
T ss_dssp CCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBT
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 79999999999999988765555442 11 22 68889999888877666653
No 126
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=23.00 E-value=4.5e+02 Score=24.83 Aligned_cols=87 Identities=11% Similarity=0.055 Sum_probs=47.6
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC--HHHHHHHHh-CCCCeEecCCCCCcCc-cCCCChHHHHHHH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD--TKLVKALYW-KGVPVFDMGSHMSTMD-VGWGSPTFHKMGR 201 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD--~~t~~~c~~-~Gvpcf~~~s~~~~~~-~~~Gs~~f~~m~~ 201 (639)
+-.+++...+. -.+-..+.++.+...+++-+|+...+ +...+.+.+ .|+|++.......... ..+-..+....+.
T Consensus 37 g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~l~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~~~ 115 (289)
T 1dbq_A 37 GYTLILGNAWN-NLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGY 115 (289)
T ss_dssp TCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECSSCCSSSCEEEEECHHHHHH
T ss_pred CCeEEEEcCCC-ChHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhccCCCEEEEccCCCccCcCCEEEeCcHHHHH
Confidence 33455544332 22334455667777788888877665 456677766 7999887754332222 1111223333333
Q ss_pred hHHHHHHHHHhcCCc
Q 036925 202 EKAILIDSVLPFGFE 216 (639)
Q Consensus 202 ~K~~vl~~lL~~Gy~ 216 (639)
. ++..+++.|+.
T Consensus 116 ~---~~~~L~~~G~~ 127 (289)
T 1dbq_A 116 M---AGRYLIERGHR 127 (289)
T ss_dssp H---HHHHHHHTTCC
T ss_pred H---HHHHHHHCCCC
Confidence 2 45556677875
No 127
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=22.93 E-value=99 Score=26.24 Aligned_cols=49 Identities=12% Similarity=0.200 Sum_probs=36.4
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEe---C--Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINF---S--SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~---~--~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.+++|-.+.=+++ . +- .+ +|--|.+.+.|++--+.+.
T Consensus 14 L~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~ln 69 (110)
T 3s8s_A 14 LNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLH 69 (110)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 7999999999999999877554444 1 11 23 5888999988886666665
No 128
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.86 E-value=83 Score=25.56 Aligned_cols=47 Identities=13% Similarity=0.322 Sum_probs=36.3
Q ss_pred CCCHHHHHHhhcccCCceEEEeCCccc-cccCCCcHHHHHHHHHHhcc
Q 036925 550 HSSEETFKTVFSSFKDVKVINFSSMKN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 550 ~~~~~~l~~~l~~~~~~~vl~~~~~~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
..++++|.+.++.|-.+.-+++....+ +|--|.+.+.|++.-+.+..
T Consensus 24 ~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g 71 (97)
T 1x5p_A 24 DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNG 71 (97)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCC
Confidence 788999999999998877777754444 68889999888876666543
No 129
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=22.84 E-value=74 Score=28.35 Aligned_cols=49 Identities=16% Similarity=0.374 Sum_probs=38.4
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++++.+++++..++. .+ +|--|.+.+.|++--+.+.
T Consensus 107 lp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 107 LSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp CCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 7899999999999999999988822222 23 6889999988887666654
No 130
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=22.54 E-value=85 Score=26.26 Aligned_cols=49 Identities=18% Similarity=0.307 Sum_probs=36.3
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.|+.|-.+.-+++. +. .+ +|--|.+.+.|++--+.+.
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (115)
T 2dgo_A 23 LSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 78 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 79999999999999988776555542 11 22 6888999988886655554
No 131
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=22.53 E-value=81 Score=26.91 Aligned_cols=49 Identities=14% Similarity=0.202 Sum_probs=36.3
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC-----ccc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS-----MKN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~-----~~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|..+.-+++.. ..+ +|-.|.+.+.|++--+.+.
T Consensus 43 lp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 97 (124)
T 2kt5_A 43 LDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK 97 (124)
T ss_dssp CCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcC
Confidence 799999999999999887665555521 122 5788999988886666554
No 132
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.45 E-value=66 Score=26.36 Aligned_cols=46 Identities=24% Similarity=0.507 Sum_probs=33.6
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHH
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRR 592 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~ 592 (639)
||...++++|.+.++.|-.+.-+++. +. .+ +|--|.+.+.+++--+
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 23 LPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH
Confidence 89999999999999998776555441 11 22 6888999987775433
No 133
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.42 E-value=75 Score=26.03 Aligned_cols=50 Identities=14% Similarity=0.291 Sum_probs=36.0
Q ss_pred eCCCCCHHHHHHhhcc-cCCceEEEe---C-Cc-cc-cccCCCcHHHHHHHHHHhcc
Q 036925 547 FPRHSSEETFKTVFSS-FKDVKVINF---S-SM-KN-AFLNFTDKTREERFRRRVKR 596 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~-~~~~~vl~~---~-~~-~~-~f~gf~d~~~~~~f~~~~~~ 596 (639)
||...++++|.+.++. |-.+.-+++ . +. .+ +|-.|.+.+.|++--+.+..
T Consensus 17 Lp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 73 (104)
T 2dhg_A 17 LTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQG 73 (104)
T ss_dssp CCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccC
Confidence 8999999999999998 776554444 1 21 22 57889999888866655543
No 134
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=22.34 E-value=4.9e+02 Score=24.77 Aligned_cols=65 Identities=11% Similarity=0.147 Sum_probs=39.4
Q ss_pred HHHHHhcCCC--eEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeCH----HHHHHHHhCCCCeEecCCC
Q 036925 118 ELVEQRVQDN--IIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALDT----KLVKALYWKGVPVFDMGSH 183 (639)
Q Consensus 118 ~L~~~~A~d~--tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD~----~t~~~c~~~Gvpcf~~~s~ 183 (639)
.+.+...+.+ .+++..++.. .+-..+.++.+...+++-+|+...+. +..+.+.+.|+|++.....
T Consensus 23 gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 93 (309)
T 2fvy_A 23 AIEQDAKAAPDVQLLMNDSQND-QSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 93 (309)
T ss_dssp HHHHHHHTCTTEEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSC
T ss_pred HHHHHHHhcCCeEEEEecCCCC-HHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCC
Confidence 3333333444 4554444322 23334556677777888888877654 4567778889998877643
No 135
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.12 E-value=99 Score=24.84 Aligned_cols=49 Identities=10% Similarity=0.244 Sum_probs=36.2
Q ss_pred eCCCCCHHHHHHhhcccCCceEE-Ee-CCcc--ccccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVI-NF-SSMK--NAFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl-~~-~~~~--~~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|..+.-+ .+ .... .+|--|.+.+.+++--+.+.
T Consensus 23 lp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~ 75 (96)
T 2e44_A 23 IPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLN 75 (96)
T ss_dssp ECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhC
Confidence 89999999999999988776555 23 2211 28888999988876655554
No 136
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=21.95 E-value=67 Score=25.37 Aligned_cols=45 Identities=20% Similarity=0.380 Sum_probs=33.2
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHH
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFR 591 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~ 591 (639)
||...++++|.+.++.|..+.-+++. +. .+ +|--|.+.+.+++--
T Consensus 19 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~ 70 (87)
T 3s7r_A 19 LSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL 70 (87)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH
Confidence 89999999999999998776555542 11 22 677899988777543
No 137
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=21.94 E-value=4.7e+02 Score=25.97 Aligned_cols=86 Identities=9% Similarity=0.126 Sum_probs=46.9
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHhCCCCeEecCCCCCcCcc-CCCChHHHHHHHh
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL--DTKLVKALYWKGVPVFDMGSHMSTMDV-GWGSPTFHKMGRE 202 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~~Gvpcf~~~s~~~~~~~-~~Gs~~f~~m~~~ 202 (639)
+-.+++..++.. .+-....+..+...+++-+|+... +++..+.+.+.|+|++........... .-+...+. .+.
T Consensus 100 g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~-~~~- 176 (355)
T 3e3m_A 100 GLQLLLGYTAYS-PEREEQLVETMLRRRPEAMVLSYDGHTEQTIRLLQRASIPIVEIWEKPAHPIGHTVGFSNER-AAY- 176 (355)
T ss_dssp TCEEEEEECTTC-HHHHHHHHHHHHHTCCSEEEEECSCCCHHHHHHHHHCCSCEEEESSCCSSCSSEEEECCHHH-HHH-
T ss_pred CCEEEEEeCCCC-hHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHhCCCCEEEECCccCCCCCCEEEeChHH-HHH-
Confidence 344555544432 223345566666778888777664 456677788889998876322111111 11223332 222
Q ss_pred HHHHHHHHHhcCCc
Q 036925 203 KAILIDSVLPFGFE 216 (639)
Q Consensus 203 K~~vl~~lL~~Gy~ 216 (639)
.++..|+++|+.
T Consensus 177 --~a~~~L~~~G~r 188 (355)
T 3e3m_A 177 --DMTNALLARGFR 188 (355)
T ss_dssp --HHHHHHHHTTCC
T ss_pred --HHHHHHHHCCCC
Confidence 245667778886
No 138
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=21.88 E-value=82 Score=27.64 Aligned_cols=49 Identities=14% Similarity=0.346 Sum_probs=37.5
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCc------cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSM------KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~------~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.+..+.-+++..- .+ +|-.|.+.+.|++.-+.+.
T Consensus 11 lp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 66 (168)
T 1b7f_A 11 LPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLN 66 (168)
T ss_dssp CCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcC
Confidence 8999999999999999887665555311 12 6888999988887766554
No 139
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=21.73 E-value=59 Score=26.15 Aligned_cols=49 Identities=10% Similarity=0.220 Sum_probs=35.7
Q ss_pred eCCCCCHHHHHHhhcccCC---ceEEEeCCc---cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKD---VKVINFSSM---KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~---~~vl~~~~~---~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.+.. ++++.-... .+ +|--|.+.+.+++.-+.+.
T Consensus 23 lp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (95)
T 2ek1_A 23 MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (95)
T ss_dssp CCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 7999999999999988755 445543322 22 6888999988887666554
No 140
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.71 E-value=87 Score=26.20 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=35.8
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeC-----Cc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFS-----SM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~-----~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.|+.|..+.-+++. +. .+ +|--|.+.+.+++.- .+.
T Consensus 33 lp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 87 (114)
T 2cq4_A 33 LAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT 87 (114)
T ss_dssp CCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT
T ss_pred CCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC
Confidence 79999999999999999877666663 12 22 577888888777655 443
No 141
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=21.55 E-value=3.5e+02 Score=26.98 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=44.0
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeC--HHHHHHHHhCCCCeEecCCCCCc-CccCCCChHHHHHHHh
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALD--TKLVKALYWKGVPVFDMGSHMST-MDVGWGSPTFHKMGRE 202 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD--~~t~~~c~~~Gvpcf~~~s~~~~-~~~~~Gs~~f~~m~~~ 202 (639)
+-.+++..++.. .+-..+.+..+...+++-+|+...+ ++..+.+.+.|+|++........ ....+-..+..+.+.
T Consensus 96 g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~~V~~D~~~~~~- 173 (348)
T 3bil_A 96 GLATIITNSNED-ATTMSGSLEFLTSHGVDGIICVPNEECANQLEDLQKQGMPVVLVDRELPGDSTIPTATSNPQPGIA- 173 (348)
T ss_dssp TCCEEEEECTTC-HHHHHHHHHHHHHTTCSCEEECCCGGGHHHHHHHHHC-CCEEEESSCCSCC-CCCEEEEECHHHHH-
T ss_pred CCEEEEEeCCCC-HHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHhCCCCEEEEcccCCCCCCCCEEEeChHHHHH-
Confidence 334555444322 2233445666666778877776653 45666777788888776543222 111111122223322
Q ss_pred HHHHHHHHHhcCCc
Q 036925 203 KAILIDSVLPFGFE 216 (639)
Q Consensus 203 K~~vl~~lL~~Gy~ 216 (639)
.++..|+++|+.
T Consensus 174 --~a~~~L~~~G~~ 185 (348)
T 3bil_A 174 --AAVELLAHNNAL 185 (348)
T ss_dssp --HHHHHHHHTTCC
T ss_pred --HHHHHHHHCCCC
Confidence 244556677875
No 142
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=21.51 E-value=63 Score=31.47 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCCeEecCCCCCcCccCCCChHHHHHHHhHHHHHHHHHh-cCCc-eEeeecceeEec-CCcc---ccccCC
Q 036925 165 KLVKALYWKGVPVFDMGSHMSTMDVGWGSPTFHKMGREKAILIDSVLP-FGFE-LLMCDTDMVWLK-NPLP---YFARYP 238 (639)
Q Consensus 165 ~t~~~c~~~Gvpcf~~~s~~~~~~~~~Gs~~f~~m~~~K~~vl~~lL~-~Gy~-VL~sDvDVVWlr-DPlp---yf~~~~ 238 (639)
.....|.+.|++...... -..+++.|-.++.++|+ .||+ +++.|+|||=+. ||-. ++ ..
T Consensus 16 ~l~~~l~~~gi~~~l~~~-------------~SlI~raRN~lv~~Fl~~~~~dhllfIDAD~~~I~FdPe~V~rLl--~~ 80 (203)
T 2c0n_A 16 PLIDFLVKNDIEYVILSR-------------RNHVAVQREIALDMFLEMKDYDTLAFLDEDVVPIEIDFQKVEAKF--NE 80 (203)
T ss_dssp HHHHHHHHTTCCEEEECC-------------CSCHHHHHHHHHHHHHHCTTCCEEEEECTTEEEEECCHHHHHHHH--HH
T ss_pred HHHHHHHhCCCeEEEEcc-------------ccchHHHHHHHHHHHHhcCCCCEEEEEeCCCCccccCHHHHHHHH--hC
Confidence 455667788888765432 01355678888888777 6987 999999965555 5532 33 24
Q ss_pred CccEEecc
Q 036925 239 DADILTSS 246 (639)
Q Consensus 239 ~aDv~vSs 246 (639)
++||++.+
T Consensus 81 g~DVV~Gs 88 (203)
T 2c0n_A 81 GYDVVCGY 88 (203)
T ss_dssp TCSEEEEE
T ss_pred CCCEEEEE
Confidence 78887743
No 143
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=21.38 E-value=5.5e+02 Score=25.45 Aligned_cols=54 Identities=17% Similarity=0.100 Sum_probs=37.4
Q ss_pred CeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeCHHHHHHHHhCCCCeEecCC
Q 036925 127 NIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALDTKLVKALYWKGVPVFDMGS 182 (639)
Q Consensus 127 ~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD~~t~~~c~~~Gvpcf~~~s 182 (639)
+.++++....+..--+......|++.|.+ +.|++ -....+..+..|+.++..+.
T Consensus 6 ~il~~~~~~~Ghv~~~~~La~~L~~~Ghe-V~v~~-~~~~~~~~~~~G~~~~~~~~ 59 (402)
T 3ia7_A 6 HILFANVQGHGHVYPSLGLVSELARRGHR-ITYVT-TPLFADEVKAAGAEVVLYKS 59 (402)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHTTCE-EEEEE-CHHHHHHHHHTTCEEEECCC
T ss_pred EEEEEeCCCCcccccHHHHHHHHHhCCCE-EEEEc-CHHHHHHHHHcCCEEEeccc
Confidence 45566666566666667788888888964 44544 45566777889998887764
No 144
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.21 E-value=1e+02 Score=24.80 Aligned_cols=49 Identities=10% Similarity=0.248 Sum_probs=36.4
Q ss_pred eCCCCCHHHHHHhhcccCCc---eEEEeCCc---cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDV---KVINFSSM---KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~---~vl~~~~~---~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.+..+ +++.-... .+ +|--|.+.+.+++--+.+.
T Consensus 23 Lp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (98)
T 2cqp_A 23 MPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (98)
T ss_dssp CCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 79999999999999887654 45554322 23 6888999988887666655
No 145
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=21.15 E-value=4.1e+02 Score=25.64 Aligned_cols=87 Identities=11% Similarity=0.150 Sum_probs=51.1
Q ss_pred CCeEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEeCH----HHHHHHHhCCCCeEecCCCCCcCcc-CCCChHHHHHH
Q 036925 126 DNIIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGALDT----KLVKALYWKGVPVFDMGSHMSTMDV-GWGSPTFHKMG 200 (639)
Q Consensus 126 d~tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAlD~----~t~~~c~~~Gvpcf~~~s~~~~~~~-~~Gs~~f~~m~ 200 (639)
+=.+++..++.. .+--.+.++.+...+++-+++...|. +..+.+.+.|+|++........... .+-..+....+
T Consensus 32 g~~~~~~~~~~~-~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g 110 (313)
T 3m9w_A 32 GAKVFVQSANGN-EETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMINDADIDFYISFDNEKVG 110 (313)
T ss_dssp SCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCCTTSCCSEEEEECHHHHH
T ss_pred CCEEEEECCCCC-HHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcCCCCCceEEEecCHHHHH
Confidence 334555444332 23334566777777899888888764 5678888899999887654433222 12222333444
Q ss_pred HhHHHHHHHHH-hcCCc
Q 036925 201 REKAILIDSVL-PFGFE 216 (639)
Q Consensus 201 ~~K~~vl~~lL-~~Gy~ 216 (639)
.. ....++ +.|+.
T Consensus 111 ~~---a~~~L~~~~G~~ 124 (313)
T 3m9w_A 111 EL---QAKALVDIVPQG 124 (313)
T ss_dssp HH---HHHHHHHHCSSE
T ss_pred HH---HHHHHHHhCCCC
Confidence 33 344555 67876
No 146
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=21.02 E-value=70 Score=26.93 Aligned_cols=49 Identities=14% Similarity=0.324 Sum_probs=37.0
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCC-----c-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSS-----M-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~-----~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.|+.|..+.-+++.. . .+ +|-.|.+.+.+++.-+.+.
T Consensus 48 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 103 (118)
T 2khc_A 48 LPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN 103 (118)
T ss_dssp SCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcC
Confidence 799999999999999998776666631 1 22 5778899988886655554
No 147
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=20.84 E-value=96 Score=26.24 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=35.6
Q ss_pred eCCCCCHHHHHHhhcccCCc---eEEEeCCc-cc-cccCCCcHHHHHHHHHHhc
Q 036925 547 FPRHSSEETFKTVFSSFKDV---KVINFSSM-KN-AFLNFTDKTREERFRRRVK 595 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~---~vl~~~~~-~~-~f~gf~d~~~~~~f~~~~~ 595 (639)
||...++++|.+.++.|-.+ +|+.=.+. .+ +|--|.+.+.|++--+.+.
T Consensus 13 Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~ 66 (115)
T 4f25_A 13 LDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 66 (115)
T ss_dssp CCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcC
Confidence 89999999999999988664 44433332 23 6889999988876655554
No 148
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.78 E-value=1e+02 Score=24.85 Aligned_cols=46 Identities=22% Similarity=0.298 Sum_probs=34.3
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEeCCcc--ccccCCCcHHHHHHHHH
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINFSSMK--NAFLNFTDKTREERFRR 592 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~~~~~--~~f~gf~d~~~~~~f~~ 592 (639)
||...++++|.+.++.|-.+.-+...... -+|-.|.+.+.+++--+
T Consensus 16 l~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~ 63 (94)
T 2e5g_A 16 FPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS 63 (94)
T ss_dssp CCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh
Confidence 79999999999999999876655443333 36778888877775544
No 149
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=20.64 E-value=4.4e+02 Score=24.47 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=54.7
Q ss_pred eEEEEEcchhhHHHHHHHHHHHHHcCCCeE-EEEE---eCHHHHHHHHhC----CCCeEecCCCC-CcCccCCCChHHHH
Q 036925 128 IIIMTFGNYAFMDFILNWVQRLTDLGLSNI-LVGA---LDTKLVKALYWK----GVPVFDMGSHM-STMDVGWGSPTFHK 198 (639)
Q Consensus 128 tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~-lVvA---lD~~t~~~c~~~----Gvpcf~~~s~~-~~~~~~~Gs~~f~~ 198 (639)
.||+.+-|.. +.+...+.|+.+....++ +|+. -++++.+.+++. ++.++..+... ......-|
T Consensus 4 SViIp~yn~~--~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~G------ 75 (255)
T 1qg8_A 4 SVIMTSYNKS--DYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRFYQSDISGVKERTEKTR------ 75 (255)
T ss_dssp EEEEEESSCT--TTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEEEECCCCSHHHHHSSCH------
T ss_pred EEEEEcCCCH--HHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHhhcCCEEEEecccccccccccccC------
Confidence 3666666765 777888888877665553 2333 235677777654 23233221000 00000111
Q ss_pred HHHhHHHHHHHHHhcCCceEeeecceeEecCCcc----ccccCCCccEEec
Q 036925 199 MGREKAILIDSVLPFGFELLMCDTDMVWLKNPLP----YFARYPDADILTS 245 (639)
Q Consensus 199 m~~~K~~vl~~lL~~Gy~VL~sDvDVVWlrDPlp----yf~~~~~aDv~vS 245 (639)
....+-..+.. ..|==+++.|.|.+|..|=+. .|...++++++.+
T Consensus 76 ~~~a~N~gi~~--a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~ 124 (255)
T 1qg8_A 76 YAALINQAIEM--AEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYS 124 (255)
T ss_dssp HHHHHHHHHHH--CCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHH--cCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEe
Confidence 11112222221 246559999999999555343 3334567777654
No 150
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.53 E-value=92 Score=24.81 Aligned_cols=45 Identities=11% Similarity=0.261 Sum_probs=32.9
Q ss_pred eCCCCCHHHHHHhhcccCCceEEEe---CCc--cc-cccCCCcHHHHHHHHH
Q 036925 547 FPRHSSEETFKTVFSSFKDVKVINF---SSM--KN-AFLNFTDKTREERFRR 592 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~~~vl~~---~~~--~~-~f~gf~d~~~~~~f~~ 592 (639)
||...++++|.+.++.+ .+.=+++ .+- .+ +|-.|.+.+.+++--+
T Consensus 18 Lp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 18 APFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH
Confidence 79999999999999988 5544443 111 22 6888999987776555
No 151
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.43 E-value=61 Score=26.84 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=35.3
Q ss_pred eCCCCCHHHHHHhhcccCC-ceEEEeC-------Cccc-cccCCCcHHHHHHHHHHh
Q 036925 547 FPRHSSEETFKTVFSSFKD-VKVINFS-------SMKN-AFLNFTDKTREERFRRRV 594 (639)
Q Consensus 547 ~~~~~~~~~l~~~l~~~~~-~~vl~~~-------~~~~-~f~gf~d~~~~~~f~~~~ 594 (639)
||...++++|.+.|+.+-. +.=+.+. ...+ +|-.|.+.+.|++--+.+
T Consensus 16 Lp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 72 (109)
T 2dis_A 16 IPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKL 72 (109)
T ss_dssp CCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTT
T ss_pred CCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHh
Confidence 7999999999999998865 5555553 1233 688899998887655554
No 152
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=20.36 E-value=4.2e+02 Score=26.14 Aligned_cols=94 Identities=15% Similarity=0.217 Sum_probs=51.3
Q ss_pred HHHHHhcCCC-eEEEEEcchhhHHHHHHHHHHHHHcCCCeEEEEEe--CHHHHHHHHhCCCCeEecC-CCCCcCccCCCC
Q 036925 118 ELVEQRVQDN-IIIMTFGNYAFMDFILNWVQRLTDLGLSNILVGAL--DTKLVKALYWKGVPVFDMG-SHMSTMDVGWGS 193 (639)
Q Consensus 118 ~L~~~~A~d~-tVIVT~~N~ay~df~~NWl~sl~r~Gv~n~lVvAl--D~~t~~~c~~~Gvpcf~~~-s~~~~~~~~~Gs 193 (639)
.+.+...+.+ .+++..++.. .+-....++.+...+++-+|+... +.+..+.+.+.|+|++... .........-+.
T Consensus 89 gi~~~a~~~g~~~~~~~~~~~-~~~~~~~i~~l~~~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~ 167 (344)
T 3kjx_A 89 GINQVLEDTELQPVVGVTDYL-PEKEEKVLYEMLSWRPSGVIIAGLEHSEAARAMLDAAGIPVVEIMDSDGKPVDAMVGI 167 (344)
T ss_dssp HHHHHHTSSSSEEEEEECTTC-HHHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHHCSSCEEEEEECSSCCSSEEEEE
T ss_pred HHHHHHHHCCCEEEEEeCCCC-HHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHhCCCCEEEEeCCCCCCCCCEEEE
Confidence 3333333333 4555544432 233345667777778998888765 4567788889999987763 211111111122
Q ss_pred hHHHHHHHhHHHHHHHHHhcCCc
Q 036925 194 PTFHKMGREKAILIDSVLPFGFE 216 (639)
Q Consensus 194 ~~f~~m~~~K~~vl~~lL~~Gy~ 216 (639)
.. ...+. ..+..|++.|+.
T Consensus 168 D~-~~~~~---~a~~~L~~~G~~ 186 (344)
T 3kjx_A 168 SH-RRAGR---EMAQAILKAGYR 186 (344)
T ss_dssp CH-HHHHH---HHHHHHHHHTCC
T ss_pred Cc-HHHHH---HHHHHHHHCCCC
Confidence 23 33332 345567778986
Done!