BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036926
         (168 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2J0A|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe
 pdb|2J0B|A Chain A, Structure Of The Catalytic Domain Of Mouse Manic Fringe In
           Complex With Udp And Manganese
          Length = 280

 Score = 29.3 bits (64), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 85  DLEMEDTTKRLRQACFKANYKKRKFMGTMMGPMVSTSSCSSRHHHQVLLDADIA-YDEYQ 143
           DL ++    R+RQ  F       + +   +GP +  + CS+ H H  L     A +D + 
Sbjct: 31  DLLLDTWVSRIRQQTFIFTDSPDERLQERLGPHLVVTQCSAEHSHPALSCKMAAEFDAFL 90

Query: 144 ITG 146
           ++G
Sbjct: 91  VSG 93


>pdb|2FEA|A Chain A, Crystal Structure Of Mtnx Phosphatase From Bacillus
           Subtilis At 2.00 A Resolution
 pdb|2FEA|B Chain B, Crystal Structure Of Mtnx Phosphatase From Bacillus
           Subtilis At 2.00 A Resolution
          Length = 236

 Score = 28.1 bits (61), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 12  TKAAK--ELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQ 56
            +AAK  +L      L   CRE N+   P++    ++  I+NV+E+Q
Sbjct: 176 VEAAKLSDLCFARDYLLNECREQNLNHLPYQDFYEIRKEIENVKEVQ 222


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.130    0.372 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,154,913
Number of Sequences: 62578
Number of extensions: 130030
Number of successful extensions: 266
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 7
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)