BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036926
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M9U9|RKD1_ARATH Protein RKD1 OS=Arabidopsis thaliana GN=RKD1 PE=3 SV=1
Length = 269
Score = 163 bits (412), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 81/119 (68%), Positives = 99/119 (83%), Gaps = 2/119 (1%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQT-EG 59
ETIS YFYMPIT+AA+ELN+GLTLLKKRCREL I+RWPHRKLMSLQ LI NV+EL+ EG
Sbjct: 131 ETISLYFYMPITQAARELNIGLTLLKKRCRELGIKRWPHRKLMSLQKLISNVKELEKMEG 190
Query: 60 EGSEERLREALGILERERKLIEERPDLEMEDTTKRLRQACFKANYKKRKFMGTMMGPMV 118
E +E++LR AL LE+E+K IE+ PDL+ ED TKRLRQACFKAN+K+++ G M P+
Sbjct: 191 EENEDKLRNALEKLEKEKKTIEKLPDLKFEDKTKRLRQACFKANHKRKRRSG-MSTPIT 248
>sp|Q9CA66|RKD2_ARATH Protein RKD2 OS=Arabidopsis thaliana GN=RKD2 PE=2 SV=1
Length = 298
Score = 157 bits (398), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/105 (71%), Positives = 91/105 (86%), Gaps = 1/105 (0%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQT-EG 59
ET+S+YFYMPIT+AA LNVGLTLLK+RCREL IRRWPHRKLMSL TLI NV+ELQ EG
Sbjct: 138 ETVSRYFYMPITQAAIALNVGLTLLKRRCRELGIRRWPHRKLMSLNTLISNVKELQKMEG 197
Query: 60 EGSEERLREALGILERERKLIEERPDLEMEDTTKRLRQACFKANY 104
E + E+L++AL +LE+E++ IE+ PDLE +D TKRLRQACFKAN+
Sbjct: 198 EENAEKLQDALEMLEKEKRTIEDLPDLEFKDKTKRLRQACFKANH 242
>sp|Q9FGD1|RKD3_ARATH Protein RKD3 OS=Arabidopsis thaliana GN=RKD3 PE=3 SV=1
Length = 277
Score = 152 bits (385), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/114 (64%), Positives = 88/114 (77%), Gaps = 2/114 (1%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQEL--QTE 58
E + QYFYMPITKAAKELN+G+TLLKKRCREL I RWPHRKL SL LI N+++L T+
Sbjct: 162 EMMKQYFYMPITKAAKELNIGVTLLKKRCRELGIPRWPHRKLTSLNALIANLKDLLGNTK 221
Query: 59 GEGSEERLREALGILERERKLIEERPDLEMEDTTKRLRQACFKANYKKRKFMGT 112
G + +LR AL +LE E+K+IEE PDLE D TKRLRQACFKA YK+R+ +
Sbjct: 222 GRTPKSKLRNALELLEMEKKMIEEVPDLEFGDKTKRLRQACFKAKYKRRRLFSS 275
>sp|Q9LVU8|RKD4_ARATH Protein RKD4 OS=Arabidopsis thaliana GN=RKD4 PE=3 SV=1
Length = 256
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/109 (61%), Positives = 80/109 (73%), Gaps = 9/109 (8%)
Query: 3 ISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGEGS 62
I Q+F PI KAAKELNVGLT+LKKRCREL I RWPHRKL SL +LIKN++ + G
Sbjct: 153 IKQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSLNSLIKNLKNV-----GM 207
Query: 63 EERLREALGILERERKLIEERPDLEMEDTTKRLRQACFKANYKKRKFMG 111
EE ++ LE R LIE+ PD E+ D TK+LRQACFKANYK+RK +G
Sbjct: 208 EEEVKN----LEEHRFLIEQEPDAELSDGTKKLRQACFKANYKRRKSLG 252
>sp|O81791|RKD5_ARATH Protein RKD5 OS=Arabidopsis thaliana GN=RKD5 PE=3 SV=1
Length = 370
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 12/113 (10%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGE 60
E +S+YF + I +A++ L VGLT+LKK+CRE I RWPHRK+ SL LI +LQ E E
Sbjct: 245 EELSKYFDLTIVEASRNLKVGLTVLKKKCREFGIPRWPHRKIKSLDCLI---HDLQREAE 301
Query: 61 GSEERLREALGI--------LERERKLIEERPDLEMEDTTKRLRQACFKANYK 105
+E+ EA + LE E++ I +RP +E+ TK+ RQ FK ++
Sbjct: 302 KQQEK-NEAAAMAVAKKQEKLETEKRNIVKRPFMEIGIETKKFRQENFKKRHR 353
>sp|Q9M1B0|NLP9_ARATH Protein NLP9 OS=Arabidopsis thaliana GN=NLP9 PE=2 SV=1
Length = 894
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%)
Query: 2 TISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGEG 61
+ QYF + AAK L V T LK+ CR+ I RWP RK+ + ++ +Q + +G
Sbjct: 540 VLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKVNRSLRKIQTVLDSVQG 599
Query: 62 SEERLR 67
E L+
Sbjct: 600 VEGGLK 605
>sp|Q7X9B9|NLP2_ARATH Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3
Length = 963
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRK-------LMSLQTLIKNVQ 53
E + QYF + AAK + V T LK+ CR+ I RWP RK L LQ +I +VQ
Sbjct: 652 EVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQ 711
Query: 54 ELQ 56
+Q
Sbjct: 712 GVQ 714
>sp|Q9SFW8|NLP5_ARATH Protein NLP5 OS=Arabidopsis thaliana GN=NLP5 PE=2 SV=1
Length = 808
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGE 60
+ + QYF + AAK + V T LK+ CR+ I+RWP RK+ + ++ +Q + E
Sbjct: 553 DVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKVGHSLQKIQRVIDSVE 612
Query: 61 G 61
G
Sbjct: 613 G 613
>sp|Q8H111|NLP1_ARATH Protein NLP1 OS=Arabidopsis thaliana GN=NLP1 PE=2 SV=1
Length = 909
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGE 60
E + QYF + AAK + V T LK+ CR+ I RWP RK+ + +K +Q + +
Sbjct: 612 EVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIMRWPSRKIKKVGHSLKKLQLVMDSVQ 671
Query: 61 GSEERLR 67
G++ ++
Sbjct: 672 GAQGSIQ 678
>sp|Q9SVF1|NLP3_ARATH Protein NLP3 OS=Arabidopsis thaliana GN=NLP3 PE=2 SV=1
Length = 767
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGE 60
+T+ Q+F + AAK + V T LK+ CR+ I RWP RK+ + ++ +Q + E
Sbjct: 502 DTLRQHFAGSLKDAAKNIGVCPTTLKRICRQNGISRWPSRKIKKVGHSLRKLQVVMDSVE 561
Query: 61 GSEERLREA 69
G + L A
Sbjct: 562 GVQGSLHLA 570
>sp|Q9LE38|NLP4_ARATH Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1
Length = 844
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGE 60
+ + QYF + AAK + V T LK+ CR+ I+RWP RK+ + ++ +Q + +
Sbjct: 562 DVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKVGHSLQKIQRVIDSVQ 621
Query: 61 G 61
G
Sbjct: 622 G 622
>sp|Q5NB82|NLP3_ORYSJ Protein NLP3 OS=Oryza sativa subsp. japonica GN=NLP3 PE=3 SV=1
Length = 938
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGE 60
+ + QYF + AAK L V T +K+ CR+ I RWP RK+ + + ++++ +
Sbjct: 602 DVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKQVIESVQ 661
Query: 61 GSE 63
GS+
Sbjct: 662 GSD 664
>sp|Q0JC27|NLP2_ORYSJ Protein NLP2 OS=Oryza sativa subsp. japonica GN=NLP2 PE=2 SV=2
Length = 936
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGE 60
+ + +YF + AAK L V T LK+ CR I RWP RK+ + +K +Q +
Sbjct: 571 DVLRKYFSGSLKDAAKSLGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVINSVH 630
Query: 61 GSEERLR 67
G + L+
Sbjct: 631 GVDRSLQ 637
>sp|Q84TH9|NLP7_ARATH Protein NLP7 OS=Arabidopsis thaliana GN=NLP7 PE=1 SV=2
Length = 959
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGE 60
+ + QYF + AAK L V T +K+ CR+ I RWP RK+ + I ++ + +
Sbjct: 595 DVLQQYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSITKLKRVIESVQ 654
Query: 61 GSE 63
G++
Sbjct: 655 GTD 657
>sp|Q8RWY4|NLP6_ARATH Protein NLP6 OS=Arabidopsis thaliana GN=NLP6 PE=2 SV=2
Length = 841
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGE 60
E + QYF + AAK L V T +K+ CR+ I RWP RK+ + + ++ + +
Sbjct: 560 EVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLTRLKHVIDSVQ 619
Query: 61 GSEERL 66
G++ L
Sbjct: 620 GADGSL 625
>sp|Q10S83|NLP1_ORYSJ Protein NLP1 OS=Oryza sativa subsp. japonica GN=NLP1 PE=2 SV=1
Length = 942
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGE 60
+ + ++F + +AAK L V T LK+ CR+ I RWP RK+ + +K +Q +
Sbjct: 626 QDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKVGHSLKKLQMVIDSVH 685
Query: 61 GSE 63
G E
Sbjct: 686 GPE 688
>sp|O22864|NLP8_ARATH Protein NLP8 OS=Arabidopsis thaliana GN=NLP8 PE=2 SV=1
Length = 947
Score = 38.1 bits (87), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 20/92 (21%)
Query: 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGEGSEER 65
YF+ P T LK+ CR+ I RWP RK+ + ++ +Q + +G E
Sbjct: 624 YFFCPTT------------LKRICRQHGIMRWPSRKINKVNRSLRKIQTVLDSVQGVEGG 671
Query: 66 LR--EALGILERERKLIEERPDLEMEDTTKRL 95
L+ A G + I RP ++ DT K L
Sbjct: 672 LKFDSATG------EFIAVRPFIQEIDTQKGL 697
>sp|P53397|OGG1_YEAST N-glycosylase/DNA lyase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=OGG1 PE=1 SV=1
Length = 376
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 61 GSEERLRE------ALGILERERKLIEERPDLEMEDTTKRLRQACFKANYK--KRKFMG- 111
+E +LRE A I+E RKL+ ++ + + T L+ C A Y+ + M
Sbjct: 176 ATEAKLRELGFGYRAKYIIETARKLVNDKAEANITSDTTYLQSICKDAQYEDVREHLMSY 235
Query: 112 TMMGPMVSTSSCSSRHHHQVLLDAD-----IAYDEYQITGNED 149
+GP V+ C H ++ D IA +YQI+ N++
Sbjct: 236 NGVGPKVADCVCLMGLHMDGIVPVDVHVSRIAKRDYQISANKN 278
>sp|Q60675|LAMA2_MOUSE Laminin subunit alpha-2 OS=Mus musculus GN=Lama2 PE=1 SV=1
Length = 3106
Score = 33.9 bits (76), Expect = 0.44, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 33 NIRRWPHRKLMSLQTLIKNV------QELQTEGEGSEERLREALGILERERKLIEERPDL 86
N + R L LQ I + ++LQT+ E +E+ L A G+L+R KL E P
Sbjct: 1701 NQDKTAERNLEELQKEIDRMLKELRSKDLQTQKEVAEDELVAAEGLLKRVNKLFGE-PRA 1759
Query: 87 EMEDTTKRLRQACFKANYKKR 107
+ ED K L+Q A YK +
Sbjct: 1760 QNEDMEKDLQQKL--AEYKNK 1778
>sp|B7G7Y7|FEN1_PHATC Flap endonuclease 1 OS=Phaeodactylum tricornutum (strain CCAP
1055/1) GN=FEN1 PE=3 SV=1
Length = 421
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 64 ERLREALGILERERKLIEERPDLEMEDTTKRLRQACFKANYKKRKFMGTMMGPMVSTSSC 123
E+ + AL + E + E+ + +KRL +A K N RK + T+MG V T+ C
Sbjct: 110 EKAQAALAVASEEGNVEEQ------DKQSKRLVRAGTKENEDCRKLL-TLMGVPVVTAPC 162
Query: 124 SSRHHHQVLLDADIAYDEYQITGNEDLEEM 153
+ L A + Y TG ED++ +
Sbjct: 163 EAEAQAAALCKAGLVY----ATGTEDMDAL 188
>sp|B7IE23|PNP_THEAB Polyribonucleotide nucleotidyltransferase OS=Thermosipho africanus
(strain TCF52B) GN=pnp PE=3 SV=1
Length = 697
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 16/73 (21%)
Query: 46 QTLIKNVQELQTEGEGSEERLREALGI---LERERKLIEER--------PDLEMEDTTKR 94
+TLI +E+ SEE LR+ L I LER KL E R D+EMED K
Sbjct: 239 ETLIGKFEEMI-----SEEELRDKLLIKEKLERSAKLKEYRDQILEKIFEDVEMEDDEKI 293
Query: 95 LRQACFKANYKKR 107
L+++ K + +R
Sbjct: 294 LQESLLKEYFDER 306
>sp|Q9NRY4|RHG35_HUMAN Rho GTPase-activating protein 35 OS=Homo sapiens GN=ARHGAP35 PE=1
SV=3
Length = 1499
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 23 TLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGEGSEERLREALGILERERKL-IE 81
++K R E NI PH I+N+ + Q+ G G+ LER RK+ I
Sbjct: 1093 AVVKPRNEEENIYSVPHDSTQGKIITIRNINKAQSNGSGNGSDSEMDTSSLERGRKVSIV 1152
Query: 82 ERPDLEMEDTTKRLRQACFKANY 104
+P L T+ R A ++ ++
Sbjct: 1153 SKPVLYRTRCTRLGRFASYRTSF 1175
>sp|Q2UDY8|PAN1_ASPOR Actin cytoskeleton-regulatory complex protein pan1 OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=pan1 PE=3 SV=1
Length = 1473
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
Query: 28 RCRELNIRRWPHRKLMSLQTLIKNVQELQTEGEGSEERLREALGIL-ERERKLIEERPDL 86
R RE +R + L+ L + VQ+ + + + ++ R EA + E+E KL +R +L
Sbjct: 1078 RKREEEFQREKEAQEARLRALQEQVQQGKIKKQEAKRRKEEADRLAKEQEAKLTVQRAEL 1137
Query: 87 EMEDTTKRLRQACFKANYKKRKFMGTMMGPMVSTSSCSSRHHHQVLLDADIA 138
EM +R RQ + + GP T S+ Q+L + DIA
Sbjct: 1138 EM--AKERERQLQLELEALDEESSSDEEGPENITPQHSTPGQSQILPEVDIA 1187
>sp|Q15UM1|SYM_PSEA6 Methionine--tRNA ligase OS=Pseudoalteromonas atlantica (strain T6c
/ ATCC BAA-1087) GN=metG PE=3 SV=1
Length = 675
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 124 SSRHHHQVLLDADIAYDEYQITGNEDLEEMGSL 156
+ HHQ LLD + YD Y +T +++ +E+ L
Sbjct: 77 TREEHHQDLLDFFVEYDNYHVTHSDENKELSEL 109
>sp|Q98P28|Y9637_RHILO UPF0229 protein mll9637 OS=Rhizobium loti (strain MAFF303099)
GN=mll9637 PE=3 SV=1
Length = 436
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 12 TKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGEGSEER-----L 66
+ A +NVG T+ R + +RR K L + + + EL+ + + R L
Sbjct: 154 SGAPTNINVGRTMRNSHGRRIALRR---PKQAELDAIARQIAELEAKPASALVRERIAAL 210
Query: 67 REALGILERERKLI 80
REAL LER RK I
Sbjct: 211 REALDRLERRRKRI 224
>sp|Q54KD0|Y7407_DICDI TPR repeat-containing protein DDB_G0287407 OS=Dictyostelium
discoideum GN=DDB_G0287407 PE=4 SV=1
Length = 1663
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
Query: 21 GLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGEGSEERLREALGILERERKLI 80
G +L +CREL I + + + + + + + S+ + R AL I +ER
Sbjct: 1128 GAEVLYNKCRELYINNSQNIEAAKVDRAMGRMYLTMGQNDKSDSKFRLALSIYTKERG-- 1185
Query: 81 EERPDLEMEDTTKRLRQACFKANYKKRKFMGTMMGPMVSTSSCSSRHHHQVLLDADIAY 139
+ D+E+ T L N K ++ ++ C S++ VLL ADIAY
Sbjct: 1186 --QEDIEVAITLNLL--GTLATNRCKFDEAKQILNQAMNI--CESKYESNVLLIADIAY 1238
>sp|B8FS78|RLMN_DESHD Probable dual-specificity RNA methyltransferase RlmN
OS=Desulfitobacterium hafniense (strain DCB-2 / DSM
10664) GN=rlmN PE=3 SV=1
Length = 357
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 20/117 (17%)
Query: 25 LKKRCRELNIRRWPHRKLMSL--QTLIKNVQELQTEGEGSEERLREALGILERERKLIEE 82
L + C EL + ++ R++ Q ++N +EL+ G G ++L+E L L+ RK+ E+
Sbjct: 17 LTQHCAELGLPKFRGRQVFQWVQQKAVQNWEELRNIGAGDRQKLQEGL-FLQPLRKVREQ 75
Query: 83 RPDLEMEDTTKRLRQA-------CFKANYKKRK-------FMGTMMGPMVSTSSCSS 125
+ + T K L + C +Y +RK + T +G V + C++
Sbjct: 76 ---IAQDGTRKFLFRCADGETLECVLMDYDRRKNRDRHTVCVSTQIGCAVGCAFCAT 129
>sp|P83509|RHG35_CANFA Rho GTPase-activating protein 35 OS=Canis familiaris GN=ARHGAP35 PE=2
SV=1
Length = 1500
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 23 TLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGEGSEERLREALGILERERKL-IE 81
++K R E NI PH I+N+ + Q+ G G+ LER RK+ I
Sbjct: 1094 AVVKPRNEEENIYSVPHDSTQGKIITIRNINKAQSNGSGNGSDSEMDTSSLERGRKVSIV 1153
Query: 82 ERPDLEMEDTTKRLRQACFKANY 104
+P L ++ R A ++ ++
Sbjct: 1154 SKPVLYRTRCSRLGRFASYRTSF 1176
>sp|A2BYH9|ATPX_PROM5 ATP synthase subunit b' OS=Prochlorococcus marinus (strain MIT
9515) GN=atpG PE=3 SV=1
Length = 153
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 3 ISQYFYMPITKAA--KELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGE 60
++ F+ P+ K +E V +++ + + + + L LQ+ Q++ ++ E
Sbjct: 35 LNSLFFKPVGKVVEKREKFVSNNIMEAKNKLSEVEKLEADLLSQLQSARSEAQKIVSDAE 94
Query: 61 GSEERL-REALGILERERKLIEERPDLEMEDTTKRLRQACFK 101
++L +EAL + E +E+ LE+E+ T R FK
Sbjct: 95 NESDKLYKEALELANNEANASKEKARLEIENQTSSARDQLFK 136
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,871,474
Number of Sequences: 539616
Number of extensions: 2081280
Number of successful extensions: 9183
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 9043
Number of HSP's gapped (non-prelim): 204
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)