Query 036926
Match_columns 168
No_of_seqs 151 out of 221
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 11:05:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036926.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036926hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2o3f_A Putative HTH-type trans 96.5 0.0014 4.7E-08 48.1 2.9 37 6-42 37-73 (111)
2 3e7l_A Transcriptional regulat 96.3 0.0035 1.2E-07 41.4 3.7 29 7-35 31-59 (63)
3 1g2h_A Transcriptional regulat 96.1 0.0044 1.5E-07 40.9 3.3 27 9-35 34-60 (61)
4 3iwf_A Transcription regulator 95.9 0.0026 9E-08 46.6 1.8 35 5-39 32-66 (107)
5 1umq_A Photosynthetic apparatu 95.4 0.012 4.2E-07 41.7 3.5 29 7-35 53-81 (81)
6 1tc3_C Protein (TC3 transposas 95.3 0.014 4.6E-07 34.1 2.9 25 8-32 21-45 (51)
7 1eto_A FIS, factor for inversi 94.8 0.025 8.5E-07 41.1 3.8 29 7-35 70-98 (98)
8 1ntc_A Protein (nitrogen regul 94.8 0.009 3.1E-07 42.0 1.4 28 7-34 63-90 (91)
9 1jko_C HIN recombinase, DNA-in 94.8 0.013 4.3E-07 34.9 1.8 27 8-34 21-47 (52)
10 1j9i_A GPNU1 DBD;, terminase s 93.8 0.029 9.8E-07 37.1 2.1 30 9-42 3-32 (68)
11 2x48_A CAG38821; archeal virus 92.9 0.065 2.2E-06 33.2 2.5 24 8-31 31-54 (55)
12 2jn6_A Protein CGL2762, transp 92.6 0.22 7.6E-06 34.2 5.2 29 8-36 23-51 (97)
13 3lsg_A Two-component response 92.4 0.11 3.9E-06 35.7 3.6 32 8-39 19-51 (103)
14 2k9s_A Arabinose operon regula 92.4 0.13 4.3E-06 35.8 3.8 38 8-45 20-58 (107)
15 2jml_A DNA binding domain/tran 92.3 0.11 3.8E-06 35.3 3.3 28 8-35 5-32 (81)
16 3oou_A LIN2118 protein; protei 91.7 0.15 5E-06 35.5 3.4 29 8-36 21-50 (108)
17 3mkl_A HTH-type transcriptiona 91.2 0.19 6.3E-06 35.8 3.6 28 8-35 23-50 (120)
18 3mn2_A Probable ARAC family tr 90.9 0.18 6.1E-06 35.0 3.2 34 8-41 18-52 (108)
19 2o8x_A Probable RNA polymerase 90.3 0.26 8.9E-06 31.2 3.3 26 6-31 29-54 (70)
20 3oio_A Transcriptional regulat 90.2 0.24 8.2E-06 34.7 3.4 28 8-35 23-51 (113)
21 1r8d_A Transcription activator 90.2 0.96 3.3E-05 32.2 6.6 27 8-35 2-28 (109)
22 2xi8_A Putative transcription 90.0 0.38 1.3E-05 29.5 3.9 28 3-30 9-36 (66)
23 2p7v_B Sigma-70, RNA polymeras 89.8 0.24 8.1E-06 32.1 2.9 24 8-31 25-48 (68)
24 2vz4_A Tipal, HTH-type transcr 89.7 0.65 2.2E-05 33.1 5.4 27 8-35 1-27 (108)
25 1y6u_A XIS, excisionase from t 89.6 0.3 1E-05 33.5 3.4 28 7-34 15-43 (70)
26 1u78_A TC3 transposase, transp 89.5 1.1 3.7E-05 31.5 6.4 25 8-32 22-46 (141)
27 3hug_A RNA polymerase sigma fa 89.2 0.34 1.2E-05 33.1 3.5 25 6-30 51-75 (92)
28 2elh_A CG11849-PA, LD40883P; s 88.8 0.31 1.1E-05 33.4 3.0 25 8-32 38-62 (87)
29 2glo_A Brinker CG9653-PA; prot 88.7 0.3 1E-05 31.1 2.7 21 11-31 28-48 (59)
30 1xsv_A Hypothetical UPF0122 pr 88.6 0.55 1.9E-05 34.0 4.4 25 6-30 39-63 (113)
31 2jpc_A SSRB; DNA binding prote 88.4 0.38 1.3E-05 30.0 3.0 28 7-34 12-43 (61)
32 1bl0_A Protein (multiple antib 88.2 0.35 1.2E-05 34.8 3.1 28 8-35 27-55 (129)
33 1ku3_A Sigma factor SIGA; heli 87.7 0.48 1.6E-05 31.0 3.3 24 8-31 30-53 (73)
34 2b5a_A C.BCLI; helix-turn-heli 87.6 0.64 2.2E-05 29.6 3.8 28 3-30 18-45 (77)
35 3b7h_A Prophage LP1 protein 11 87.6 0.71 2.4E-05 29.4 4.0 28 3-30 15-42 (78)
36 3fmy_A HTH-type transcriptiona 87.5 0.38 1.3E-05 31.5 2.7 38 2-42 18-55 (73)
37 2r1j_L Repressor protein C2; p 87.3 0.45 1.5E-05 29.4 2.8 28 3-30 13-40 (68)
38 1z4h_A TORI, TOR inhibition pr 87.2 0.37 1.3E-05 31.7 2.5 27 9-35 11-37 (66)
39 1uxc_A FRUR (1-57), fructose r 87.2 0.46 1.6E-05 31.7 3.0 24 9-32 1-24 (65)
40 1zug_A Phage 434 CRO protein; 86.9 0.52 1.8E-05 29.4 3.0 29 2-30 10-38 (71)
41 3o9x_A Uncharacterized HTH-typ 86.9 0.39 1.3E-05 34.6 2.7 38 2-42 78-115 (133)
42 3omt_A Uncharacterized protein 86.8 0.51 1.8E-05 30.2 3.0 29 3-31 16-44 (73)
43 3bs3_A Putative DNA-binding pr 86.8 0.89 3E-05 28.8 4.2 28 3-30 18-45 (76)
44 1y7y_A C.AHDI; helix-turn-heli 86.6 0.87 3E-05 28.6 4.0 28 3-30 21-48 (74)
45 1adr_A P22 C2 repressor; trans 86.4 0.77 2.6E-05 29.0 3.7 28 3-30 13-40 (76)
46 1r69_A Repressor protein CI; g 86.4 0.57 2E-05 29.1 3.0 28 3-30 9-36 (69)
47 3s8q_A R-M controller protein; 86.4 0.88 3E-05 29.6 4.0 30 3-34 19-48 (82)
48 3t76_A VANU, transcriptional r 86.3 1.1 3.6E-05 31.3 4.7 30 2-31 31-60 (88)
49 1x3u_A Transcriptional regulat 86.1 0.74 2.5E-05 29.9 3.5 29 6-34 29-61 (79)
50 2wiu_B HTH-type transcriptiona 85.6 0.72 2.5E-05 30.1 3.3 28 3-30 20-47 (88)
51 2kpj_A SOS-response transcript 85.6 1.1 3.7E-05 30.2 4.3 28 3-30 17-44 (94)
52 2k9q_A Uncharacterized protein 85.5 0.6 2.1E-05 30.2 2.8 29 2-30 9-37 (77)
53 1fse_A GERE; helix-turn-helix 85.3 0.76 2.6E-05 29.2 3.2 24 7-30 25-48 (74)
54 3gpv_A Transcriptional regulat 85.3 2.4 8.2E-05 32.0 6.5 32 8-40 16-47 (148)
55 1pdn_C Protein (PRD paired); p 85.3 0.64 2.2E-05 31.8 3.0 25 8-32 33-57 (128)
56 2ef8_A C.ECOT38IS, putative tr 85.1 0.68 2.3E-05 29.9 3.0 29 2-30 17-45 (84)
57 1tty_A Sigma-A, RNA polymerase 85.1 0.75 2.6E-05 31.2 3.3 23 8-30 38-60 (87)
58 3bd1_A CRO protein; transcript 85.0 0.98 3.4E-05 29.5 3.7 32 2-34 6-37 (79)
59 1je8_A Nitrate/nitrite respons 84.7 0.82 2.8E-05 30.9 3.3 24 6-29 34-57 (82)
60 2lfw_A PHYR sigma-like domain; 84.4 0.74 2.5E-05 33.9 3.2 27 5-31 106-132 (157)
61 1jhg_A Trp operon repressor; c 84.3 0.68 2.3E-05 34.1 3.0 24 9-32 59-82 (101)
62 3gbg_A TCP pilus virulence reg 84.3 0.79 2.7E-05 36.0 3.5 28 8-35 185-212 (276)
63 2ewt_A BLDD, putative DNA-bind 84.2 1.9 6.5E-05 26.9 4.7 28 3-30 16-45 (71)
64 3ulq_B Transcriptional regulat 83.9 1 3.6E-05 31.3 3.7 28 7-34 43-74 (90)
65 3qq6_A HTH-type transcriptiona 83.8 0.82 2.8E-05 30.2 3.0 30 2-31 17-46 (78)
66 1b0n_A Protein (SINR protein); 83.8 1.4 4.7E-05 30.0 4.2 40 2-43 8-48 (111)
67 2a6c_A Helix-turn-helix motif; 83.1 0.94 3.2E-05 30.1 3.0 28 3-30 26-53 (83)
68 3f6w_A XRE-family like protein 83.1 1.5 5.2E-05 28.4 4.0 28 3-30 22-49 (83)
69 3kz3_A Repressor protein CI; f 83.0 1.9 6.4E-05 28.1 4.5 28 3-30 20-47 (80)
70 2rn7_A IS629 ORFA; helix, all 83.0 0.54 1.9E-05 32.7 1.9 25 9-33 31-55 (108)
71 3op9_A PLI0006 protein; struct 82.9 1.6 5.5E-05 30.2 4.3 29 3-31 17-45 (114)
72 3c57_A Two component transcrip 82.6 1 3.6E-05 31.2 3.2 25 6-30 40-64 (95)
73 3gp4_A Transcriptional regulat 82.5 1.4 4.7E-05 33.3 4.1 28 8-36 2-29 (142)
74 1p4w_A RCSB; solution structur 82.4 1.1 3.9E-05 31.9 3.4 29 7-35 48-80 (99)
75 2ppx_A AGR_C_3184P, uncharacte 82.4 0.97 3.3E-05 31.0 3.0 29 2-30 37-65 (99)
76 1q06_A Transcriptional regulat 82.1 2.8 9.5E-05 31.1 5.6 25 9-34 1-25 (135)
77 3eus_A DNA-binding protein; st 81.9 1.2 4E-05 29.9 3.2 30 3-34 22-51 (86)
78 2eby_A Putative HTH-type trans 81.8 1.1 3.7E-05 31.1 3.1 28 3-30 19-46 (113)
79 2cw1_A SN4M; lambda CRO fold, 81.8 1.2 4.2E-05 30.0 3.2 23 10-32 15-37 (65)
80 1lmb_3 Protein (lambda repress 81.6 1.8 6.2E-05 28.6 4.0 27 4-30 26-52 (92)
81 2ict_A Antitoxin HIGA; helix-t 81.2 1.3 4.3E-05 29.7 3.1 28 3-30 16-43 (94)
82 1s7o_A Hypothetical UPF0122 pr 81.1 1.3 4.4E-05 32.2 3.4 25 7-31 37-61 (113)
83 3qao_A LMO0526 protein, MERR-l 80.8 3.8 0.00013 33.6 6.5 27 8-35 3-29 (249)
84 1x57_A Endothelial differentia 80.6 1.5 5.2E-05 29.2 3.4 30 2-31 20-49 (91)
85 1k78_A Paired box protein PAX5 80.5 1.2 4E-05 32.3 3.0 25 8-32 48-72 (149)
86 2pij_A Prophage PFL 6 CRO; tra 80.2 1.6 5.5E-05 27.4 3.2 26 5-31 11-36 (67)
87 1zx4_A P1 PARB, plasmid partit 80.1 18 0.00063 29.0 10.2 69 7-85 23-105 (192)
88 3neu_A LIN1836 protein; struct 79.9 1.2 4.2E-05 32.4 2.9 25 8-32 36-61 (125)
89 2p5k_A Arginine repressor; DNA 79.8 1.8 6.1E-05 27.0 3.3 28 7-34 18-50 (64)
90 1qgp_A Protein (double strande 79.6 1.2 4E-05 30.4 2.6 25 8-32 31-55 (77)
91 2rnj_A Response regulator prot 79.4 1.1 3.8E-05 30.4 2.4 29 6-34 42-74 (91)
92 3i4p_A Transcriptional regulat 79.4 1.4 4.7E-05 33.1 3.2 30 3-32 12-41 (162)
93 2l49_A C protein; P2 bacteriop 79.1 1.5 5.2E-05 29.3 3.0 29 2-30 11-39 (99)
94 2hin_A GP39, repressor protein 78.6 1.7 5.9E-05 29.8 3.1 32 3-35 6-37 (71)
95 1i3j_A I-TEVI, intron-associat 78.5 1.5 5.1E-05 33.1 3.0 30 7-39 82-111 (116)
96 1neq_A DNA-binding protein NER 78.4 0.88 3E-05 30.8 1.6 24 7-30 21-44 (74)
97 3mlf_A Transcriptional regulat 78.3 1.8 6.1E-05 30.7 3.3 29 2-30 30-58 (111)
98 2l8n_A Transcriptional repress 78.0 1 3.5E-05 30.2 1.8 24 8-31 9-32 (67)
99 2cob_A LCOR protein; MLR2, KIA 78.0 2.1 7.3E-05 30.0 3.5 35 9-43 31-67 (70)
100 1qbj_A Protein (double-strande 77.1 1.7 5.9E-05 30.2 2.9 25 8-32 27-51 (81)
101 3frw_A Putative Trp repressor 76.9 1.8 6.1E-05 32.5 3.0 33 8-40 58-90 (107)
102 2k27_A Paired box protein PAX- 76.6 1.2 4.2E-05 32.7 2.1 25 8-32 41-65 (159)
103 3g5g_A Regulatory protein; tra 76.5 1.9 6.5E-05 30.0 3.0 28 3-30 36-63 (99)
104 1rzs_A Antirepressor, regulato 76.4 1.1 3.9E-05 28.8 1.7 21 9-29 11-31 (61)
105 1d5y_A ROB transcription facto 76.3 1.4 4.7E-05 34.8 2.4 42 8-49 19-61 (292)
106 2p5v_A Transcriptional regulat 76.2 2 6.7E-05 31.9 3.2 30 3-32 19-48 (162)
107 3kxa_A NGO0477 protein, putati 75.9 2.3 7.9E-05 31.6 3.5 29 3-31 76-104 (141)
108 3kor_A Possible Trp repressor; 75.8 1.9 6.6E-05 32.8 3.0 33 8-40 75-107 (119)
109 4fe7_A Xylose operon regulator 75.8 2.1 7.2E-05 35.7 3.6 29 8-36 321-350 (412)
110 3t72_q RNA polymerase sigma fa 75.7 2.2 7.6E-05 30.5 3.2 24 8-31 39-62 (99)
111 1nd9_A Translation initiation 75.6 1.5 5.3E-05 26.4 2.0 25 10-34 4-28 (49)
112 3trb_A Virulence-associated pr 75.5 2.1 7.3E-05 30.4 3.1 28 3-30 22-49 (104)
113 3cec_A Putative antidote prote 75.3 2.1 7.1E-05 29.3 2.8 28 3-30 26-53 (104)
114 3vk0_A NHTF, transcriptional r 75.3 3 0.0001 29.2 3.7 28 3-30 29-56 (114)
115 1u8b_A ADA polyprotein; protei 75.2 2.2 7.4E-05 30.6 3.0 28 8-35 93-121 (133)
116 1u78_A TC3 transposase, transp 74.9 3 0.0001 29.2 3.7 27 8-34 77-105 (141)
117 3ivp_A Putative transposon-rel 74.6 2.6 8.8E-05 29.8 3.3 29 2-30 19-47 (126)
118 2e1c_A Putative HTH-type trans 74.5 2.2 7.7E-05 32.6 3.2 30 3-32 36-65 (171)
119 2pn6_A ST1022, 150AA long hypo 74.5 2.4 8.2E-05 30.8 3.2 30 3-32 12-41 (150)
120 2ao9_A Phage protein; structur 74.4 2.3 7.9E-05 33.4 3.2 24 8-31 48-71 (155)
121 4ghj_A Probable transcriptiona 74.1 2.3 8E-05 30.3 3.0 30 2-33 43-72 (101)
122 2ke4_A CDC42-interacting prote 74.0 4.9 0.00017 29.3 4.7 59 38-103 13-82 (98)
123 2zhg_A Redox-sensitive transcr 74.0 2.6 8.7E-05 32.2 3.4 31 8-40 11-41 (154)
124 2cyy_A Putative HTH-type trans 73.8 2.5 8.7E-05 30.9 3.2 30 3-32 16-45 (151)
125 2ia0_A Putative HTH-type trans 73.7 2.4 8.3E-05 32.3 3.2 30 3-32 26-55 (171)
126 3f52_A CLP gene regulator (CLG 73.3 2.6 9E-05 29.3 3.0 28 3-30 36-63 (117)
127 2w7n_A TRFB transcriptional re 72.9 2.8 9.7E-05 30.7 3.2 21 8-28 34-54 (101)
128 2heo_A Z-DNA binding protein 1 72.6 2.3 8E-05 27.9 2.5 24 9-32 26-49 (67)
129 2wus_R RODZ, putative uncharac 72.5 2.9 9.9E-05 30.2 3.2 28 3-30 15-42 (112)
130 4ham_A LMO2241 protein; struct 72.4 2.3 7.8E-05 31.0 2.6 25 8-32 37-62 (134)
131 1i1g_A Transcriptional regulat 72.4 2.9 0.0001 29.8 3.2 25 8-32 18-42 (141)
132 2auw_A Hypothetical protein NE 72.4 2.5 8.4E-05 33.7 3.0 37 2-40 97-133 (170)
133 2o38_A Hypothetical protein; a 72.3 2.7 9.1E-05 30.6 3.0 28 3-30 48-75 (120)
134 2kfs_A Conserved hypothetical 72.3 2.4 8.4E-05 33.3 2.9 26 9-34 32-57 (148)
135 2d1h_A ST1889, 109AA long hypo 71.9 2.5 8.6E-05 28.0 2.6 25 8-32 36-60 (109)
136 1hlv_A CENP-B, major centromer 71.8 2.9 9.9E-05 29.5 3.0 23 9-31 26-48 (131)
137 2ev1_A Hypothetical protein RV 71.6 3.1 0.00011 34.5 3.5 29 10-38 80-108 (222)
138 2dbb_A Putative HTH-type trans 71.6 3.3 0.00011 30.1 3.3 28 5-32 20-47 (151)
139 2jvl_A TRMBF1; coactivator, he 71.5 2.9 0.0001 29.3 3.0 28 3-30 42-71 (107)
140 2htj_A P fimbrial regulatory p 70.5 3.4 0.00012 27.4 2.9 24 8-31 14-37 (81)
141 2bnm_A Epoxidase; oxidoreducta 69.6 3.2 0.00011 31.1 3.0 30 2-31 17-46 (198)
142 1r8e_A Multidrug-efflux transp 69.6 7.5 0.00026 30.7 5.3 25 9-34 6-30 (278)
143 3hot_A Transposable element ma 68.9 4.3 0.00015 32.7 3.8 30 6-35 84-113 (345)
144 2og0_A Excisionase; protein-DN 68.8 3 0.0001 27.2 2.3 26 9-34 3-30 (52)
145 3ihu_A Transcriptional regulat 68.8 2.9 9.9E-05 32.4 2.6 26 7-32 38-63 (222)
146 2cg4_A Regulatory protein ASNC 68.7 3.8 0.00013 29.9 3.2 26 7-32 21-46 (152)
147 3lfp_A CSP231I C protein; tran 68.7 4.5 0.00015 27.3 3.3 28 3-30 9-40 (98)
148 2p5t_A Putative transcriptiona 68.6 1 3.5E-05 33.5 0.0 32 2-35 8-39 (158)
149 1hqc_A RUVB; extended AAA-ATPa 67.4 2.3 7.8E-05 33.7 1.8 24 11-34 267-290 (324)
150 1oyi_A Double-stranded RNA-bin 67.1 3.6 0.00012 29.2 2.6 25 8-32 30-54 (82)
151 2cfx_A HTH-type transcriptiona 67.0 4.3 0.00015 29.5 3.1 28 5-32 16-43 (144)
152 2gxg_A 146AA long hypothetical 66.8 28 0.00097 23.9 7.3 25 8-32 50-74 (146)
153 3geu_A Intercellular adhesion 66.1 32 0.0011 24.2 7.7 34 6-52 21-54 (189)
154 3tqn_A Transcriptional regulat 65.4 4.3 0.00015 28.8 2.8 23 10-32 35-57 (113)
155 2b0l_A GTP-sensing transcripti 65.2 4.4 0.00015 28.8 2.8 23 10-32 45-67 (102)
156 1y9q_A Transcriptional regulat 65.2 4.4 0.00015 30.3 3.0 29 3-31 19-47 (192)
157 1q1h_A TFE, transcription fact 65.2 4.4 0.00015 27.9 2.8 25 8-32 33-57 (110)
158 1y0u_A Arsenical resistance op 64.8 5.2 0.00018 27.0 3.0 25 8-32 43-67 (96)
159 3fym_A Putative uncharacterize 64.8 4.8 0.00016 29.3 3.0 29 2-30 10-38 (130)
160 2jt1_A PEFI protein; solution 64.2 4.7 0.00016 27.8 2.7 24 7-30 23-46 (77)
161 1hw1_A FADR, fatty acid metabo 64.1 4.5 0.00016 31.3 2.9 25 8-32 30-55 (239)
162 2ovg_A Phage lambda CRO; trans 64.1 5.1 0.00017 26.8 2.8 22 10-31 15-36 (66)
163 3cuo_A Uncharacterized HTH-typ 64.0 4.6 0.00016 26.6 2.6 25 8-32 38-62 (99)
164 2w25_A Probable transcriptiona 63.8 5.4 0.00019 29.0 3.2 26 7-32 20-45 (150)
165 1sfx_A Conserved hypothetical 63.2 6.4 0.00022 25.9 3.2 26 7-32 33-58 (109)
166 1on2_A Transcriptional regulat 62.8 5.7 0.0002 28.2 3.1 33 8-40 22-58 (142)
167 2l0k_A Stage III sporulation p 62.7 4.6 0.00016 28.9 2.5 23 8-30 20-42 (93)
168 3r0a_A Putative transcriptiona 62.4 4.8 0.00016 28.9 2.6 24 9-32 43-66 (123)
169 3by6_A Predicted transcription 62.2 4.9 0.00017 29.3 2.6 23 10-32 37-59 (126)
170 1ub9_A Hypothetical protein PH 61.5 5.6 0.00019 26.1 2.6 25 8-32 30-54 (100)
171 1v4r_A Transcriptional repress 60.7 4.4 0.00015 27.9 2.1 26 8-33 34-60 (102)
172 2ek5_A Predicted transcription 60.7 6.4 0.00022 28.9 3.1 26 8-33 27-53 (129)
173 2hsg_A Glucose-resistance amyl 60.5 5.8 0.0002 31.4 3.0 24 9-32 3-26 (332)
174 2x4h_A Hypothetical protein SS 60.2 6.6 0.00023 27.6 3.0 25 8-32 31-55 (139)
175 2jrt_A Uncharacterized protein 59.5 8.7 0.0003 27.5 3.5 25 8-32 49-73 (95)
176 1qpz_A PURA, protein (purine n 59.4 6.5 0.00022 31.4 3.1 23 10-32 2-24 (340)
177 1pm6_A Excisionase; antiparall 59.0 7.2 0.00025 27.0 2.9 26 9-34 3-30 (72)
178 3sxy_A Transcriptional regulat 58.9 5.7 0.0002 30.6 2.6 25 8-32 35-59 (218)
179 2di3_A Bacterial regulatory pr 58.7 6.4 0.00022 30.7 2.9 25 8-32 27-52 (239)
180 2lkp_A Transcriptional regulat 58.5 7.6 0.00026 26.9 3.0 25 8-32 45-69 (119)
181 3hh0_A Transcriptional regulat 58.4 8.7 0.0003 28.9 3.5 26 8-34 4-29 (146)
182 3c7j_A Transcriptional regulat 58.4 6.5 0.00022 31.2 2.9 33 8-40 49-85 (237)
183 3b73_A PHIH1 repressor-like pr 57.4 5.8 0.0002 29.0 2.3 26 7-32 26-53 (111)
184 2y75_A HTH-type transcriptiona 57.3 8.3 0.00028 27.4 3.1 25 8-32 26-50 (129)
185 3nrv_A Putative transcriptiona 56.1 8.6 0.00029 26.9 3.0 26 8-33 54-79 (148)
186 2nnn_A Probable transcriptiona 55.5 9.9 0.00034 26.1 3.2 26 8-33 52-77 (140)
187 3kjx_A Transcriptional regulat 55.2 6.8 0.00023 31.3 2.6 21 9-29 11-31 (344)
188 2dg6_A Putative transcriptiona 55.1 11 0.00038 30.6 3.9 25 9-34 1-25 (222)
189 1ixc_A CBNR, LYSR-type regulat 55.1 7.6 0.00026 29.3 2.7 26 9-34 16-45 (294)
190 3kkc_A TETR family transcripti 54.7 4.7 0.00016 28.2 1.4 36 19-54 29-65 (177)
191 3h5t_A Transcriptional regulat 54.6 6.3 0.00022 31.8 2.3 22 9-30 10-31 (366)
192 2l1p_A DNA-binding protein SAT 54.2 18 0.00062 26.1 4.4 38 8-45 32-69 (83)
193 2oqg_A Possible transcriptiona 54.2 11 0.00037 25.6 3.2 25 8-32 34-58 (114)
194 3hhg_A Transcriptional regulat 54.0 8.1 0.00028 29.4 2.7 27 8-34 17-47 (306)
195 2h09_A Transcriptional regulat 53.9 9.8 0.00033 27.4 3.0 33 8-40 54-90 (155)
196 3qp6_A CVIR transcriptional re 53.8 11 0.00038 30.4 3.7 28 7-34 211-242 (265)
197 3bdn_A Lambda repressor; repre 53.5 7.7 0.00026 29.8 2.6 28 3-30 25-52 (236)
198 3bro_A Transcriptional regulat 52.8 11 0.00037 26.0 3.0 25 8-32 50-74 (141)
199 3cta_A Riboflavin kinase; stru 52.8 8.8 0.0003 30.0 2.8 26 8-33 27-52 (230)
200 2fjr_A Repressor protein CI; g 52.6 13 0.00043 27.7 3.5 22 10-31 22-43 (189)
201 2a61_A Transcriptional regulat 52.6 11 0.00037 26.1 3.0 26 8-33 47-72 (145)
202 3tgn_A ADC operon repressor AD 52.5 10 0.00036 26.3 2.9 30 9-38 52-85 (146)
203 2esn_A Probable transcriptiona 52.1 9 0.00031 29.3 2.7 27 8-34 24-54 (310)
204 3bdd_A Regulatory protein MARR 52.0 11 0.00038 25.8 3.0 25 8-32 45-69 (142)
205 3fxq_A LYSR type regulator of 51.9 9.8 0.00033 29.2 2.9 27 8-34 16-46 (305)
206 3szp_A Transcriptional regulat 51.8 9.4 0.00032 28.5 2.7 21 8-28 15-35 (291)
207 3nrg_A TETR family transcripti 51.7 59 0.002 23.1 7.0 36 17-52 28-64 (217)
208 2oa4_A SIR5; structure, struct 51.7 11 0.00037 27.7 2.9 25 8-32 50-74 (101)
209 2fbh_A Transcriptional regulat 51.7 12 0.0004 25.9 3.0 25 8-32 52-76 (146)
210 2guz_B Mitochondrial import in 51.6 13 0.00044 25.0 3.1 15 9-23 1-15 (65)
211 1ku9_A Hypothetical protein MJ 51.6 9.5 0.00032 26.3 2.6 25 8-32 41-65 (152)
212 2hr3_A Probable transcriptiona 51.6 12 0.00042 26.0 3.2 25 8-32 50-74 (147)
213 3bpv_A Transcriptional regulat 51.4 13 0.00043 25.5 3.2 26 7-32 42-67 (138)
214 3qkx_A Uncharacterized HTH-typ 51.4 5.7 0.0002 27.8 1.4 34 19-52 25-59 (188)
215 4hku_A LMO2814 protein, TETR t 51.0 50 0.0017 23.4 6.5 42 11-52 12-58 (178)
216 3jth_A Transcription activator 51.0 10 0.00034 25.4 2.6 25 8-32 36-60 (98)
217 2hs5_A Putative transcriptiona 50.9 9.1 0.00031 30.2 2.6 33 8-40 51-87 (239)
218 2ofy_A Putative XRE-family tra 50.6 11 0.00036 24.5 2.5 21 10-30 29-49 (86)
219 1vz0_A PARB, chromosome partit 50.4 12 0.00041 30.2 3.3 29 6-34 132-160 (230)
220 3ppb_A Putative TETR family tr 50.1 6.2 0.00021 27.6 1.4 34 19-52 26-60 (195)
221 4a0z_A Transcription factor FA 49.9 11 0.00039 29.6 3.1 34 4-37 22-55 (190)
222 1j5y_A Transcriptional regulat 49.1 11 0.00039 28.6 2.9 26 9-34 37-65 (187)
223 2h8r_A Hepatocyte nuclear fact 49.1 11 0.00036 31.4 2.8 28 3-30 39-66 (221)
224 2pg4_A Uncharacterized protein 49.0 8.9 0.0003 25.7 2.0 23 8-30 30-53 (95)
225 2qvo_A Uncharacterized protein 48.9 12 0.00042 25.1 2.7 24 9-32 31-54 (95)
226 4ev0_A Transcription regulator 48.8 12 0.00041 27.4 2.8 39 7-45 162-203 (216)
227 2rek_A Putative TETR-family tr 48.8 13 0.00044 26.6 3.0 23 5-28 33-55 (199)
228 3eco_A MEPR; mutlidrug efflux 48.7 11 0.00038 26.0 2.6 25 8-32 47-71 (139)
229 2fa5_A Transcriptional regulat 48.1 14 0.00047 26.2 3.0 25 8-32 63-87 (162)
230 3j20_O 30S ribosomal protein S 48.1 19 0.00065 28.1 4.0 27 17-45 28-54 (148)
231 3zym_A Phosphatidylinositol-bi 47.3 18 0.00062 30.6 4.1 52 3-54 226-294 (310)
232 3dv8_A Transcriptional regulat 47.3 14 0.00048 27.0 3.0 40 7-46 168-210 (220)
233 1r1u_A CZRA, repressor protein 47.2 14 0.00048 25.3 2.9 24 8-31 39-62 (106)
234 2fbi_A Probable transcriptiona 46.9 14 0.00047 25.4 2.8 25 8-32 50-74 (142)
235 1lj9_A Transcriptional regulat 46.6 12 0.00043 25.8 2.5 25 8-32 43-67 (144)
236 1z0x_A Transcriptional regulat 46.4 22 0.00076 26.8 4.1 37 19-55 23-60 (220)
237 3c3w_A Two component transcrip 46.3 19 0.00065 27.0 3.7 28 8-35 164-195 (225)
238 3cjn_A Transcriptional regulat 46.3 13 0.00043 26.5 2.6 25 8-32 66-90 (162)
239 2eth_A Transcriptional regulat 46.2 16 0.00056 25.8 3.2 25 8-32 58-82 (154)
240 3k2z_A LEXA repressor; winged 45.9 15 0.00051 28.1 3.1 25 8-32 24-48 (196)
241 3bqz_B HTH-type transcriptiona 45.8 17 0.00057 25.5 3.1 22 6-27 20-41 (194)
242 3h5o_A Transcriptional regulat 45.7 4.3 0.00015 32.4 0.0 23 9-31 5-27 (339)
243 2qww_A Transcriptional regulat 45.7 13 0.00044 26.1 2.5 25 8-32 55-79 (154)
244 3cdh_A Transcriptional regulat 45.6 17 0.00058 25.6 3.2 25 8-32 57-81 (155)
245 2fmy_A COOA, carbon monoxide o 45.3 16 0.00055 27.0 3.1 40 7-46 166-209 (220)
246 3oop_A LIN2960 protein; protei 45.1 14 0.00047 25.8 2.6 26 8-33 51-76 (143)
247 3knw_A Putative transcriptiona 45.0 15 0.0005 26.2 2.7 22 6-27 32-53 (212)
248 1sfu_A 34L protein; protein/Z- 44.9 15 0.00052 25.8 2.7 39 13-57 19-58 (75)
249 3dkw_A DNR protein; CRP-FNR, H 44.8 16 0.00054 26.9 3.0 26 7-32 177-202 (227)
250 2qwt_A Transcriptional regulat 44.7 16 0.00056 26.3 3.0 20 8-27 32-51 (196)
251 3lhq_A Acrab operon repressor 44.5 15 0.00052 26.1 2.7 22 6-27 32-53 (220)
252 3n0r_A Response regulator; sig 44.5 17 0.0006 29.3 3.4 28 3-30 122-149 (286)
253 3f1b_A TETR-like transcription 44.2 17 0.00059 25.5 3.0 33 7-52 33-65 (203)
254 1j1v_A Chromosomal replication 44.2 22 0.00075 25.0 3.5 28 4-31 42-70 (94)
255 1xn7_A Hypothetical protein YH 44.1 17 0.00057 25.0 2.8 27 4-30 12-38 (78)
256 3qkx_A Uncharacterized HTH-typ 44.0 15 0.00052 25.5 2.7 25 5-29 25-49 (188)
257 3cwr_A Transcriptional regulat 44.0 17 0.00056 25.7 2.9 36 6-54 35-70 (208)
258 3on2_A Probable transcriptiona 44.0 77 0.0026 21.9 7.4 35 18-52 28-63 (199)
259 3bja_A Transcriptional regulat 43.9 11 0.00036 25.9 1.8 25 8-32 47-71 (139)
260 1uly_A Hypothetical protein PH 43.9 15 0.00051 28.6 2.9 25 8-32 33-57 (192)
261 3ppb_A Putative TETR family tr 43.9 16 0.00055 25.5 2.8 25 5-29 26-50 (195)
262 2ijl_A AGR_C_4647P, molybdenum 43.9 16 0.00055 27.5 2.9 26 9-34 39-68 (135)
263 4aci_A HTH-type transcriptiona 43.7 15 0.0005 26.0 2.6 22 6-27 32-53 (191)
264 3rd3_A Probable transcriptiona 43.7 79 0.0027 21.9 8.5 33 7-52 29-61 (197)
265 3on4_A Transcriptional regulat 43.5 17 0.00059 25.3 2.9 34 6-52 28-61 (191)
266 2fu4_A Ferric uptake regulatio 43.5 20 0.00067 23.3 3.0 24 7-30 32-60 (83)
267 3fzv_A Probable transcriptiona 43.4 9.3 0.00032 29.0 1.5 28 8-35 18-49 (306)
268 3egq_A TETR family transcripti 43.3 17 0.00058 25.3 2.8 34 6-52 22-55 (170)
269 1ft9_A Carbon monoxide oxidati 43.1 18 0.00061 26.9 3.1 36 7-42 162-200 (222)
270 2rdp_A Putative transcriptiona 43.0 20 0.00068 24.9 3.2 25 8-32 56-80 (150)
271 3isp_A HTH-type transcriptiona 42.9 13 0.00044 28.5 2.3 27 8-34 20-50 (303)
272 1zk8_A Transcriptional regulat 42.9 8.6 0.00029 27.1 1.2 34 19-52 25-59 (183)
273 3bj6_A Transcriptional regulat 42.9 15 0.00052 25.6 2.5 25 8-32 54-78 (152)
274 3f1b_A TETR-like transcription 42.8 10 0.00034 26.8 1.6 25 11-35 19-47 (203)
275 3kp7_A Transcriptional regulat 42.8 15 0.00051 25.9 2.5 33 8-40 51-83 (151)
276 2zcw_A TTHA1359, transcription 42.6 17 0.00057 26.6 2.8 39 7-45 145-186 (202)
277 2qtq_A Transcriptional regulat 42.6 19 0.00066 25.5 3.1 22 6-27 34-55 (213)
278 3b02_A Transcriptional regulat 42.6 16 0.00055 26.6 2.7 39 7-45 138-179 (195)
279 3o60_A LIN0861 protein; PSI, M 42.6 9.1 0.00031 28.3 1.3 42 11-52 24-71 (185)
280 3e97_A Transcriptional regulat 42.5 18 0.00062 26.8 3.0 40 7-46 174-216 (231)
281 3pqk_A Biofilm growth-associat 42.5 17 0.00057 24.6 2.6 25 8-32 36-60 (102)
282 3dew_A Transcriptional regulat 42.3 18 0.00063 25.3 2.9 34 6-52 26-59 (206)
283 2rnn_A E3 SUMO-protein ligase 42.3 1.1E+02 0.0037 23.0 8.7 33 20-57 40-72 (114)
284 3pas_A TETR family transcripti 42.2 15 0.00051 25.6 2.4 22 6-27 26-47 (195)
285 3kkc_A TETR family transcripti 42.1 14 0.00048 25.7 2.2 24 5-28 29-52 (177)
286 2wv0_A YVOA, HTH-type transcri 41.9 17 0.00057 28.9 2.9 25 8-32 33-58 (243)
287 1s3j_A YUSO protein; structura 41.9 16 0.00055 25.6 2.5 25 8-32 51-75 (155)
288 2g7s_A Transcriptional regulat 41.8 19 0.00065 25.0 2.9 22 6-27 26-47 (194)
289 2gau_A Transcriptional regulat 41.8 21 0.00072 26.5 3.3 39 7-45 179-220 (232)
290 1ylf_A RRF2 family protein; st 41.7 18 0.00063 26.6 2.9 24 9-32 31-54 (149)
291 3fm5_A Transcriptional regulat 41.5 16 0.00054 25.7 2.5 33 8-40 54-86 (150)
292 2kko_A Possible transcriptiona 41.4 16 0.00055 25.3 2.5 25 8-32 38-62 (108)
293 2dk5_A DNA-directed RNA polyme 41.3 19 0.00063 25.3 2.7 25 8-32 36-60 (91)
294 3vpr_A Transcriptional regulat 41.2 19 0.00067 25.5 2.9 22 6-27 21-42 (190)
295 3hsr_A HTH-type transcriptiona 41.2 15 0.00052 25.6 2.3 26 8-33 50-75 (140)
296 3gzi_A Transcriptional regulat 41.2 12 0.00043 26.8 1.9 32 8-52 37-68 (218)
297 2pex_A Transcriptional regulat 41.1 17 0.00058 25.6 2.6 26 8-33 61-86 (153)
298 1r1t_A Transcriptional repress 41.1 20 0.00068 25.6 3.0 25 8-32 59-83 (122)
299 1sfu_A 34L protein; protein/Z- 41.0 19 0.00065 25.3 2.7 24 8-31 29-52 (75)
300 2zcm_A Biofilm operon icaabcd 41.0 21 0.0007 25.4 3.0 33 7-52 26-58 (192)
301 2opt_A Actii protein; helical 40.9 34 0.0012 26.5 4.5 36 19-54 23-59 (234)
302 3lwj_A Putative TETR-family tr 40.8 20 0.00067 25.4 2.9 20 7-26 31-50 (202)
303 1pb6_A Hypothetical transcript 40.8 21 0.00072 25.4 3.0 32 8-52 38-69 (212)
304 3la7_A Global nitrogen regulat 40.7 20 0.00068 27.3 3.1 26 7-32 192-217 (243)
305 3e6c_C CPRK, cyclic nucleotide 40.7 20 0.00068 27.2 3.1 49 7-57 176-227 (250)
306 2dg7_A Putative transcriptiona 40.5 19 0.00066 25.6 2.8 26 5-30 24-49 (195)
307 1u2w_A CADC repressor, cadmium 40.5 17 0.0006 25.7 2.6 25 8-32 56-80 (122)
308 2w48_A Sorbitol operon regulat 40.4 20 0.00068 29.4 3.2 28 8-35 21-51 (315)
309 1tns_A MU-transposase; DNA-bin 40.4 13 0.00045 25.9 1.8 33 9-44 5-39 (76)
310 3bwg_A Uncharacterized HTH-typ 40.3 20 0.00068 28.4 3.1 25 8-32 28-53 (239)
311 3kz9_A SMCR; transcriptional r 40.2 10 0.00034 26.8 1.2 32 8-52 37-68 (206)
312 2zkz_A Transcriptional repress 39.9 19 0.00064 24.6 2.6 28 8-35 41-68 (99)
313 3oou_A LIN2118 protein; protei 39.7 25 0.00087 23.9 3.2 28 8-35 70-99 (108)
314 3mky_B Protein SOPB; partition 39.6 19 0.00067 29.1 3.0 33 3-35 37-69 (189)
315 3ctp_A Periplasmic binding pro 39.5 6.2 0.00021 31.3 0.0 25 9-33 3-27 (330)
316 2o20_A Catabolite control prot 39.5 6.2 0.00021 31.3 0.0 23 9-31 6-28 (332)
317 2jj7_A Hemolysin II regulatory 39.4 19 0.00064 25.3 2.6 36 6-54 25-60 (186)
318 3fiw_A Putative TETR-family tr 39.4 39 0.0013 25.4 4.5 36 19-54 42-78 (211)
319 3ech_A MEXR, multidrug resista 39.4 19 0.00065 25.0 2.6 26 8-33 51-76 (142)
320 4ich_A Transcriptional regulat 39.2 6.3 0.00022 31.4 0.0 26 2-27 37-62 (311)
321 2k9l_A RNA polymerase sigma fa 39.2 25 0.00087 23.7 3.1 26 4-29 44-69 (76)
322 2fq4_A Transcriptional regulat 39.2 21 0.00071 25.6 2.8 34 6-52 30-63 (192)
323 3vp5_A Transcriptional regulat 39.1 11 0.00038 27.2 1.3 34 19-52 29-63 (189)
324 3bru_A Regulatory protein, TET 39.0 1E+02 0.0035 21.9 8.3 21 6-26 48-68 (222)
325 1c9b_A General transcription f 39.0 22 0.00074 27.2 3.1 25 8-32 159-183 (207)
326 3gzi_A Transcriptional regulat 39.0 20 0.00069 25.7 2.7 26 11-36 22-51 (218)
327 2d6y_A Putative TETR family re 39.0 24 0.00081 25.7 3.1 34 6-52 26-59 (202)
328 1zk8_A Transcriptional regulat 39.0 18 0.00061 25.4 2.4 23 5-27 25-47 (183)
329 3dpj_A Transcription regulator 38.8 22 0.00074 25.1 2.8 22 6-27 26-47 (194)
330 3d0s_A Transcriptional regulat 38.7 23 0.00079 26.2 3.1 25 8-32 177-201 (227)
331 2q24_A Putative TETR family tr 38.7 23 0.00078 25.2 3.0 19 8-26 34-52 (194)
332 3dbi_A Sugar-binding transcrip 38.6 6.5 0.00022 31.2 0.0 22 9-30 4-25 (338)
333 3he0_A Transcriptional regulat 38.6 11 0.00039 26.5 1.3 34 19-52 28-62 (196)
334 1jye_A Lactose operon represso 38.6 6.5 0.00022 31.6 0.0 24 9-32 4-27 (349)
335 3edp_A LIN2111 protein; APC883 38.5 21 0.00072 28.3 3.0 25 8-32 32-57 (236)
336 1pb6_A Hypothetical transcript 38.4 13 0.00044 26.5 1.6 25 11-35 23-51 (212)
337 2bv6_A MGRA, HTH-type transcri 38.4 15 0.00051 25.5 1.9 24 9-32 52-75 (142)
338 3dcf_A Transcriptional regulat 38.4 22 0.00075 25.3 2.8 19 8-26 51-69 (218)
339 3kz9_A SMCR; transcriptional r 38.3 21 0.00072 25.1 2.7 25 11-35 22-50 (206)
340 1jgs_A Multiple antibiotic res 38.3 26 0.00091 23.9 3.2 25 8-32 48-72 (138)
341 1deq_A Fibrinogen (alpha chain 38.3 50 0.0017 29.7 5.6 78 60-143 105-182 (390)
342 3nfi_A DNA-directed RNA polyme 38.2 19 0.00066 29.4 2.8 29 6-34 175-203 (237)
343 3f3x_A Transcriptional regulat 38.1 21 0.00072 24.8 2.6 31 10-40 52-82 (144)
344 1sgm_A Putative HTH-type trans 38.0 17 0.00058 25.3 2.1 34 19-52 23-58 (191)
345 3vp5_A Transcriptional regulat 37.9 20 0.00068 25.9 2.6 24 5-28 29-52 (189)
346 2nyx_A Probable transcriptiona 37.9 20 0.00069 26.0 2.6 25 8-32 59-83 (168)
347 4aya_A DNA-binding protein inh 37.8 48 0.0016 24.3 4.6 55 31-85 20-85 (97)
348 3loc_A HTH-type transcriptiona 37.8 19 0.00065 25.5 2.4 23 5-27 35-57 (212)
349 3aqt_A Bacterial regulatory pr 37.5 15 0.00051 27.7 1.9 41 12-52 52-97 (245)
350 3cjd_A Transcriptional regulat 37.3 12 0.00041 27.3 1.2 42 11-52 17-63 (198)
351 3jvd_A Transcriptional regulat 37.2 7.1 0.00024 31.3 0.0 22 9-30 7-28 (333)
352 1z91_A Organic hydroperoxide r 37.1 19 0.00063 25.0 2.2 25 8-32 54-78 (147)
353 3col_A Putative transcription 36.9 20 0.00069 25.0 2.4 32 8-52 30-61 (196)
354 3g3z_A NMB1585, transcriptiona 36.8 29 0.00098 24.1 3.2 25 8-32 45-69 (145)
355 3s5r_A Transcriptional regulat 36.7 23 0.00078 25.3 2.7 22 6-27 28-49 (216)
356 2rae_A Transcriptional regulat 36.6 27 0.00092 24.9 3.1 25 6-30 35-59 (207)
357 3bil_A Probable LACI-family tr 36.4 7.4 0.00025 31.4 0.0 23 9-31 9-31 (348)
358 3c2b_A Transcriptional regulat 36.4 27 0.00092 25.2 3.1 36 6-54 33-68 (221)
359 2zb9_A Putative transcriptiona 36.4 25 0.00086 25.4 2.9 22 6-27 41-62 (214)
360 1jhf_A LEXA repressor; LEXA SO 36.3 29 0.00098 26.2 3.3 23 7-29 22-47 (202)
361 2o7t_A Transcriptional regulat 36.2 24 0.00083 25.2 2.8 21 6-26 26-46 (199)
362 3dcf_A Transcriptional regulat 36.0 13 0.00046 26.5 1.3 41 12-52 37-82 (218)
363 3nxc_A HTH-type protein SLMA; 36.0 13 0.00044 26.6 1.2 34 19-52 42-76 (212)
364 2dg7_A Putative transcriptiona 35.9 15 0.0005 26.2 1.5 38 11-48 12-54 (195)
365 3e3m_A Transcriptional regulat 35.9 7.6 0.00026 31.2 0.0 22 9-30 13-34 (355)
366 3qbm_A TETR transcriptional re 35.9 20 0.00068 25.1 2.2 33 7-52 26-58 (199)
367 2dg8_A Putative TETR-family tr 35.9 17 0.00059 26.0 1.9 34 19-52 26-60 (193)
368 3eup_A Transcriptional regulat 35.9 17 0.00058 25.6 1.9 34 6-52 29-62 (204)
369 3mvp_A TETR/ACRR transcription 35.9 26 0.0009 24.9 2.9 33 7-52 45-77 (217)
370 2hxo_A Putative TETR-family tr 35.9 82 0.0028 24.1 6.0 44 11-54 21-69 (237)
371 3cjd_A Transcriptional regulat 35.7 24 0.00082 25.6 2.7 26 5-30 29-54 (198)
372 2frh_A SARA, staphylococcal ac 35.7 19 0.00064 25.3 2.1 25 8-32 53-77 (127)
373 3nqo_A MARR-family transcripti 35.7 26 0.00089 26.2 3.0 26 8-33 57-82 (189)
374 3he0_A Transcriptional regulat 35.7 21 0.00072 25.0 2.3 23 5-27 28-50 (196)
375 3nxc_A HTH-type protein SLMA; 35.7 21 0.00072 25.4 2.4 24 5-28 42-65 (212)
376 2wte_A CSA3; antiviral protein 35.6 24 0.00083 28.6 3.0 25 8-32 166-190 (244)
377 1tbx_A ORF F-93, hypothetical 35.6 25 0.00085 23.4 2.6 25 8-32 22-50 (99)
378 3b81_A Transcriptional regulat 35.6 20 0.00069 25.3 2.2 34 19-52 28-62 (203)
379 2k02_A Ferrous iron transport 35.5 22 0.00075 25.1 2.4 28 5-32 13-40 (87)
380 3boq_A Transcriptional regulat 35.4 14 0.00049 26.1 1.4 23 8-30 62-84 (160)
381 2ras_A Transcriptional regulat 35.2 22 0.00074 25.6 2.4 34 6-52 29-62 (212)
382 3ic7_A Putative transcriptiona 35.1 4.4 0.00015 29.5 -1.4 24 10-33 37-60 (126)
383 3jw4_A Transcriptional regulat 35.1 14 0.00048 25.9 1.3 31 8-38 57-91 (148)
384 3bqy_A Putative TETR family tr 34.9 24 0.00084 26.5 2.7 33 8-53 22-54 (209)
385 2eh3_A Transcriptional regulat 34.9 24 0.00083 24.8 2.6 21 6-26 20-40 (179)
386 3f0c_A TETR-molecule A, transc 34.9 26 0.0009 25.0 2.8 33 7-52 30-62 (216)
387 3eet_A Putative GNTR-family tr 34.7 25 0.00086 28.6 2.9 25 8-32 52-77 (272)
388 1z7u_A Hypothetical protein EF 34.6 33 0.0011 23.8 3.2 25 8-32 35-60 (112)
389 3frq_A Repressor protein MPHR( 34.6 24 0.00084 25.0 2.6 22 6-27 26-47 (195)
390 1r71_A Transcriptional repress 34.6 33 0.0011 26.9 3.5 27 8-34 52-78 (178)
391 3ljl_A Transcriptional regulat 34.5 23 0.00079 24.9 2.4 20 7-26 33-52 (156)
392 3fx3_A Cyclic nucleotide-bindi 34.4 25 0.00086 26.1 2.7 38 7-45 175-217 (237)
393 1rr7_A Middle operon regulator 34.4 34 0.0012 25.5 3.4 28 6-33 90-117 (129)
394 3rh2_A Hypothetical TETR-like 34.3 28 0.00097 25.0 2.9 21 7-27 22-42 (212)
395 4b8x_A SCO5413, possible MARR- 34.2 24 0.00081 25.4 2.5 25 9-33 52-76 (147)
396 4fx0_A Probable transcriptiona 34.1 28 0.00095 25.2 2.8 25 9-33 53-77 (148)
397 3k0l_A Repressor protein; heli 34.1 27 0.00092 25.0 2.7 25 8-32 60-84 (162)
398 3bhq_A Transcriptional regulat 33.9 29 0.001 25.1 2.9 22 6-27 30-51 (211)
399 3t8r_A Staphylococcus aureus C 33.6 26 0.0009 25.8 2.6 24 9-32 29-52 (143)
400 2wui_A MEXZ, transcriptional r 33.5 28 0.00095 25.3 2.7 34 6-52 29-62 (210)
401 2xdn_A HTH-type transcriptiona 33.4 25 0.00086 25.4 2.5 34 19-52 28-62 (210)
402 3e6m_A MARR family transcripti 33.3 1.2E+02 0.004 21.4 6.1 25 8-32 67-91 (161)
403 3mnl_A KSTR, transcriptional r 33.1 25 0.00085 24.8 2.4 32 8-52 40-71 (203)
404 3mz1_A Putative transcriptiona 32.9 9.2 0.00031 28.6 0.0 22 9-30 13-34 (300)
405 3e7q_A Transcriptional regulat 32.9 1.3E+02 0.0043 21.1 7.6 23 5-27 31-53 (215)
406 2dg8_A Putative TETR-family tr 32.8 30 0.001 24.7 2.8 24 5-28 26-49 (193)
407 2i10_A Putative TETR transcrip 32.6 34 0.0012 24.8 3.1 34 6-52 29-62 (202)
408 3crj_A Transcription regulator 32.6 26 0.00089 25.4 2.4 34 6-52 32-65 (199)
409 3df8_A Possible HXLR family tr 32.5 31 0.0011 24.2 2.8 23 10-32 44-67 (111)
410 2hyt_A TETR-family transcripti 32.3 30 0.001 24.8 2.7 34 19-52 29-63 (197)
411 1al3_A Cys regulon transcripti 32.0 9.7 0.00033 29.8 0.0 26 9-34 17-46 (324)
412 4hku_A LMO2814 protein, TETR t 31.9 20 0.00069 25.6 1.7 23 5-27 24-46 (178)
413 3npi_A TETR family regulatory 31.9 28 0.00095 26.2 2.6 23 6-28 36-58 (251)
414 3k69_A Putative transcription 31.9 21 0.00073 27.1 1.9 24 9-32 29-52 (162)
415 3f6o_A Probable transcriptiona 31.9 24 0.00081 24.7 2.1 24 8-31 31-54 (118)
416 1t33_A Putative transcriptiona 31.8 39 0.0013 24.4 3.3 19 9-27 32-50 (224)
417 2id3_A Putative transcriptiona 31.8 34 0.0012 25.2 3.1 34 7-53 59-92 (225)
418 1qsd_A Protein (beta-tubulin b 31.8 1.5E+02 0.005 21.6 6.4 74 15-102 3-76 (106)
419 3vib_A MTRR; helix-turn-helix 31.7 30 0.001 24.9 2.7 33 7-52 29-61 (210)
420 1vi0_A Transcriptional regulat 31.7 31 0.0011 25.1 2.7 22 6-27 26-47 (206)
421 4hbl_A Transcriptional regulat 31.6 32 0.0011 24.2 2.7 25 8-32 55-79 (149)
422 2xpw_A Tetracycline repressor 31.2 25 0.00085 26.4 2.2 34 6-52 21-54 (207)
423 3u2r_A Regulatory protein MARR 31.1 23 0.0008 25.5 2.0 25 8-32 62-86 (168)
424 2ibd_A Possible transcriptiona 31.0 33 0.0011 24.7 2.8 32 8-52 34-65 (204)
425 3nrg_A TETR family transcripti 30.9 17 0.00058 26.0 1.2 23 5-27 30-52 (217)
426 1mkm_A ICLR transcriptional re 30.9 36 0.0012 26.8 3.2 25 8-32 23-47 (249)
427 4fcy_A Transposase; rnaseh, DD 30.9 30 0.001 29.9 2.9 22 11-32 55-76 (529)
428 3lwf_A LIN1550 protein, putati 30.9 33 0.0011 26.1 2.9 24 9-32 45-68 (159)
429 2np5_A Transcriptional regulat 30.8 35 0.0012 24.7 2.9 33 6-51 27-59 (203)
430 1ic8_A Hepatocyte nuclear fact 30.8 33 0.0011 27.4 3.0 24 6-29 41-64 (194)
431 2v57_A TETR family transcripti 30.7 34 0.0012 24.0 2.7 21 7-27 31-51 (190)
432 2jsc_A Transcriptional regulat 30.5 21 0.00071 25.1 1.6 24 9-32 35-58 (118)
433 2h9b_A HTH-type transcriptiona 30.4 11 0.00037 29.3 0.0 26 9-34 16-45 (312)
434 2gqq_A Leucine-responsive regu 30.4 3.2 0.00011 30.9 -2.9 26 6-31 25-50 (163)
435 2f07_A YVDT; helix-turn-helix, 30.4 33 0.0011 24.7 2.7 21 7-27 29-49 (197)
436 2obp_A Putative DNA-binding pr 30.4 39 0.0013 24.2 3.0 25 8-32 36-60 (96)
437 4aik_A Transcriptional regulat 30.4 38 0.0013 24.5 3.1 24 9-32 47-70 (151)
438 3nnr_A Transcriptional regulat 30.3 35 0.0012 24.9 2.9 34 19-52 22-56 (228)
439 2pz9_A Putative regulatory pro 30.3 31 0.0011 25.4 2.6 22 6-27 48-69 (226)
440 3ewt_E Tumor necrosis factor r 30.3 35 0.0012 19.5 2.2 23 10-34 3-25 (25)
441 3fiw_A Putative TETR-family tr 30.2 25 0.00087 26.5 2.1 24 5-28 42-65 (211)
442 3anp_C Transcriptional repress 30.1 33 0.0011 24.6 2.7 22 6-27 27-48 (204)
443 2f2e_A PA1607; transcription f 30.1 37 0.0013 24.9 2.9 25 8-32 37-61 (146)
444 2y2z_A SIM16, SIMR, putative r 30.1 57 0.0019 25.9 4.3 37 19-55 44-81 (267)
445 3onq_A Regulator of polyketide 30.0 31 0.0011 28.1 2.7 29 2-30 201-231 (262)
446 4dyq_A Gene 1 protein; GP1, oc 29.9 34 0.0012 25.2 2.7 25 8-32 28-53 (140)
447 3hta_A EBRA repressor; TETR fa 29.9 38 0.0013 24.9 3.0 34 6-52 46-79 (217)
448 1nr3_A MTH0916, DNA-binding pr 29.8 1.9 6.4E-05 31.1 -4.2 26 4-30 2-27 (122)
449 3g7r_A Putative transcriptiona 29.8 35 0.0012 25.0 2.8 21 6-26 53-73 (221)
450 2opt_A Actii protein; helical 29.8 37 0.0013 26.3 3.1 26 5-30 23-48 (234)
451 2g7g_A RHA04620, putative tran 29.6 28 0.00097 26.1 2.3 34 8-54 29-62 (213)
452 2oer_A Probable transcriptiona 29.5 36 0.0012 24.8 2.8 23 5-27 41-63 (214)
453 3bni_A Putative TETR-family tr 29.5 20 0.00067 26.7 1.3 32 8-52 63-94 (229)
454 3bqy_A Putative TETR family tr 29.5 18 0.00063 27.2 1.2 39 11-55 7-49 (209)
455 3r4k_A Transcriptional regulat 29.3 30 0.001 27.7 2.5 32 8-39 21-56 (260)
456 1rkt_A Protein YFIR; transcrip 29.3 30 0.001 25.0 2.3 34 6-52 30-63 (205)
457 3cdl_A Transcriptional regulat 29.1 33 0.0011 24.7 2.5 33 7-52 28-60 (203)
458 2fd5_A Transcriptional regulat 28.8 25 0.00087 24.6 1.8 34 19-52 24-58 (180)
459 2nx4_A Transcriptional regulat 28.8 36 0.0012 24.4 2.6 32 7-51 29-60 (194)
460 4dnn_A Protein quaking, MQKI, 28.8 32 0.0011 23.2 2.1 33 69-101 6-47 (56)
461 3hrs_A Metalloregulator SCAR; 28.7 39 0.0013 26.3 3.0 33 8-40 20-56 (214)
462 2k48_A Nucleoprotein; viral pr 28.7 41 0.0014 25.3 2.9 37 49-85 34-70 (107)
463 3q0w_A HTH-type transcriptiona 28.7 1.7E+02 0.0059 21.4 8.9 21 6-26 62-82 (236)
464 2oi8_A Putative regulatory pro 28.7 31 0.0011 25.7 2.3 35 19-53 33-68 (216)
465 2guh_A Putative TETR-family tr 28.7 40 0.0014 24.9 3.0 21 7-27 58-78 (214)
466 2hyj_A Putative TETR-family tr 28.7 32 0.0011 24.9 2.4 21 6-26 30-50 (200)
467 2iu5_A DHAS, YCEG, HTH-type dh 28.5 22 0.00076 25.4 1.4 37 18-54 29-66 (195)
468 3s2w_A Transcriptional regulat 28.4 1.5E+02 0.0053 20.7 7.0 26 8-33 64-89 (159)
469 2hoe_A N-acetylglucosamine kin 28.4 36 0.0012 28.4 2.9 26 7-32 32-57 (380)
470 3bni_A Putative TETR-family tr 28.2 1.8E+02 0.006 21.3 8.4 25 11-35 48-76 (229)
471 3ccy_A Putative TETR-family tr 28.2 25 0.00085 25.2 1.7 35 18-52 30-65 (203)
472 2xrn_A HTH-type transcriptiona 28.2 36 0.0012 26.8 2.8 25 8-32 21-45 (241)
473 2g7l_A TETR-family transcripti 28.2 33 0.0011 26.7 2.5 37 19-55 36-73 (243)
474 1uth_A LYSR-type regulatory pr 28.1 12 0.00042 29.1 0.0 22 9-30 29-50 (315)
475 1xd7_A YWNA; structural genomi 28.0 40 0.0014 24.6 2.8 23 10-32 25-47 (145)
476 1xwr_A Regulatory protein CII; 28.0 19 0.00065 26.1 1.0 24 5-28 20-43 (97)
477 1bia_A BIRA bifunctional prote 27.9 37 0.0013 28.2 2.9 28 8-35 19-49 (321)
478 3jsj_A Putative TETR-family tr 27.9 40 0.0014 23.7 2.7 31 9-52 29-59 (190)
479 3f8m_A GNTR-family protein tra 27.8 40 0.0014 26.8 3.0 24 9-32 36-60 (248)
480 2g7u_A Transcriptional regulat 27.7 41 0.0014 26.7 3.0 24 8-31 29-52 (257)
481 3lof_A Heat shock 70 kDa prote 27.7 1.6E+02 0.0053 20.5 6.0 61 43-103 12-79 (113)
482 1b9m_A Protein (mode); DNA-bin 27.7 37 0.0013 26.4 2.7 26 9-34 35-64 (265)
483 1z6r_A MLC protein; transcript 27.7 43 0.0015 27.9 3.3 28 5-32 27-54 (406)
484 2gen_A Probable transcriptiona 27.5 39 0.0013 24.3 2.7 19 8-26 27-45 (197)
485 2qib_A TETR-family transcripti 27.4 41 0.0014 24.9 2.8 32 8-52 33-64 (231)
486 2hxi_A Putative transcriptiona 27.4 38 0.0013 26.2 2.7 34 19-52 46-80 (241)
487 3aqt_A Bacterial regulatory pr 27.3 26 0.0009 26.3 1.7 23 5-27 63-85 (245)
488 3bjb_A Probable transcriptiona 27.3 41 0.0014 24.5 2.8 32 8-52 42-73 (207)
489 2yve_A Transcriptional regulat 27.1 41 0.0014 24.0 2.7 34 19-52 21-55 (185)
490 1b4a_A Arginine repressor; hel 27.1 60 0.0021 24.8 3.8 35 4-38 15-54 (149)
491 2fxa_A Protease production reg 27.1 40 0.0014 25.9 2.8 25 8-32 62-86 (207)
492 1ui5_A A-factor receptor homol 27.0 42 0.0015 24.6 2.8 21 6-26 27-47 (215)
493 2h98_A HTH-type transcriptiona 27.0 13 0.00045 29.1 0.0 22 9-30 16-37 (313)
494 2w53_A Repressor, SMet; antibi 26.9 35 0.0012 24.7 2.3 32 7-51 30-61 (219)
495 1z0x_A Transcriptional regulat 26.6 33 0.0011 25.8 2.2 24 5-28 23-46 (220)
496 2hzt_A Putative HTH-type trans 26.6 53 0.0018 22.5 3.1 24 8-31 27-51 (107)
497 2g3b_A Putative TETR-family tr 26.5 40 0.0014 24.6 2.6 22 6-27 21-42 (208)
498 3k6t_A Female germline-specifi 26.4 70 0.0024 21.7 3.5 37 69-105 9-51 (60)
499 2iai_A Putative transcriptiona 26.3 36 0.0012 25.1 2.3 34 19-52 47-81 (230)
500 1z05_A Transcriptional regulat 26.3 45 0.0015 28.3 3.2 29 5-33 50-78 (429)
No 1
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=96.53 E-value=0.0014 Score=48.12 Aligned_cols=37 Identities=8% Similarity=0.167 Sum_probs=32.5
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhh
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKL 42 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKl 42 (168)
..++++.+.|++.|||.+++-|.||++|...|+-=|.
T Consensus 37 ~~~~si~elA~~~~vS~aTv~Rf~kklG~~gf~efk~ 73 (111)
T 2o3f_A 37 AIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXM 73 (111)
T ss_dssp HHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHhcCHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 3579999999999999999999999999988875443
No 2
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=96.33 E-value=0.0035 Score=41.36 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=26.4
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
++-.+.+||+.||||.++|.+.++++||.
T Consensus 31 ~~gn~~~aA~~LGisr~tL~rklkk~gi~ 59 (63)
T 3e7l_A 31 YDYDLKRTAEEIGIDLSNLYRKIKSLNIR 59 (63)
T ss_dssp TTTCHHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHHhCCC
Confidence 45678899999999999999999999995
No 3
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=96.10 E-value=0.0044 Score=40.86 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=24.7
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 9 MPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
--..+||+.||||.++|.+..+++||.
T Consensus 34 gn~~~aA~~LGIsr~tL~rklkk~gi~ 60 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIANKLKQYGIG 60 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHHHHTTTCC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 367899999999999999999999984
No 4
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=95.93 E-value=0.0026 Score=46.65 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=31.0
Q ss_pred hhccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCc
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPH 39 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~ 39 (168)
...++++.+.|++.|||.+++-|.||++|...|+-
T Consensus 32 ~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~e 66 (107)
T 3iwf_A 32 KVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNE 66 (107)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHH
T ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHH
Confidence 34589999999999999999999999999976654
No 5
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=95.41 E-value=0.012 Score=41.68 Aligned_cols=29 Identities=17% Similarity=0.182 Sum_probs=25.8
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
++--+.+||+.|||+.++|.++.+++||.
T Consensus 53 ~~GN~s~AA~~LGISR~TLyrKLkk~gi~ 81 (81)
T 1umq_A 53 CDRNVSETARRLNMHRRTLQRILAKRSPR 81 (81)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHTSSCC
T ss_pred hCCCHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 45568899999999999999999999983
No 6
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=95.27 E-value=0.014 Score=34.08 Aligned_cols=25 Identities=0% Similarity=0.139 Sum_probs=22.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+++..++|+.||||.+++++..+++
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 6899999999999999999998765
No 7
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=94.84 E-value=0.025 Score=41.06 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=25.9
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
++--+.+||+.|||+.++|.++.+++||.
T Consensus 70 ~~gn~~~AA~~LGIsR~TL~rkLkk~gi~ 98 (98)
T 1eto_A 70 TLGNQTRAALMMGINRGTLRKKLKKYGMN 98 (98)
T ss_dssp TTTCHHHHHHHHTSCHHHHHHHHHHTTCC
T ss_pred hCCCHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 45568899999999999999999999983
No 8
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=94.82 E-value=0.009 Score=41.99 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=24.9
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
++--+.+||+.||||.++|.++.+++||
T Consensus 63 ~~gn~~~aA~~LGIsr~tL~rklkk~~i 90 (91)
T 1ntc_A 63 TQGHKQEAARLLGWGAATLTAKLKELGM 90 (91)
T ss_dssp TTTCTTHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCcCHHHHHHHHHHhCc
Confidence 3556789999999999999999999987
No 9
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=94.80 E-value=0.013 Score=34.95 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=24.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
++++.++|+.||||.+++.+..+++|+
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHccc
Confidence 589999999999999999999988885
No 10
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=93.82 E-value=0.029 Score=37.11 Aligned_cols=30 Identities=7% Similarity=0.127 Sum_probs=24.6
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhh
Q 036926 9 MPITKAAKELNVGLTLLKKRCRELNIRRWPHRKL 42 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKl 42 (168)
|...|||+.||||.+||.+..++ |+ |+.+.
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~-G~---P~~~~ 32 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ-GM---PVLRG 32 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT-TC---CCSSC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC-CC---CeEee
Confidence 67899999999999999887665 87 66554
No 11
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=92.86 E-value=0.065 Score=33.21 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=21.6
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
++++.++|+.||||.+++++..++
T Consensus 31 g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 31 GYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHh
Confidence 789999999999999999998753
No 12
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=92.63 E-value=0.22 Score=34.17 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=25.4
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRR 36 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~R 36 (168)
+.++.++|+.+|||.++|.+..++++...
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~~~~~g 51 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIKYGSNH 51 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred CChHHHHHHHHCcCHHHHHHHHHHHhhcC
Confidence 68999999999999999999998876533
No 13
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=92.44 E-value=0.11 Score=35.72 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=27.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc-CCCCCCc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL-NIRRWPH 39 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l-GI~RWP~ 39 (168)
.+++.+.|+.+|||.+.|.+.+++. |+.---|
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~~~ 51 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDY 51 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHSSCHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHH
Confidence 5789999999999999999999998 9853333
No 14
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=92.44 E-value=0.13 Score=35.83 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=29.6
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc-CCCCCCchhhhcH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL-NIRRWPHRKLMSL 45 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l-GI~RWP~RKlkSL 45 (168)
.+++.+.|+.+|||.+.|.|++++. |+.---|.....+
T Consensus 20 ~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl 58 (107)
T 2k9s_A 20 NFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRI 58 (107)
T ss_dssp SCCHHHHHHHTTSCHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4789999999999999999999986 9854444333333
No 15
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=92.30 E-value=0.11 Score=35.30 Aligned_cols=28 Identities=14% Similarity=0.136 Sum_probs=25.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
.+++.|+|+.+||++.+|+...++.|+.
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~~gl~ 32 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERRYGFP 32 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHHTCCS
T ss_pred cccHHHHHHHHCcCHHHHHHHHHhCCCC
Confidence 4789999999999999999999987864
No 16
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=91.65 E-value=0.15 Score=35.55 Aligned_cols=29 Identities=7% Similarity=0.099 Sum_probs=26.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc-CCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL-NIRR 36 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l-GI~R 36 (168)
.+++.+.|+.+|||.+.|.|.+++. |+.-
T Consensus 21 ~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~ 50 (108)
T 3oou_A 21 GMSLKTLGNDFHINAVYLGQLFQKEMGEHF 50 (108)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHSSCH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 5789999999999999999999988 9853
No 17
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=91.18 E-value=0.19 Score=35.76 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=25.9
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
.+++.+.|+.+|||.+.|.|.+++.|+.
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~fk~~G~s 50 (120)
T 3mkl_A 23 EWTLARIASELLMSPSLLKKKLREEETS 50 (120)
T ss_dssp CCCHHHHHHHTTCCHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcCCC
Confidence 5789999999999999999999999874
No 18
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=90.93 E-value=0.18 Score=35.03 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=28.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc-CCCCCCchh
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL-NIRRWPHRK 41 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l-GI~RWP~RK 41 (168)
.+++.+.|+.+|||.+.|.|.+++. |+.---|..
T Consensus 18 ~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~ 52 (108)
T 3mn2_A 18 PITIEKLTALTGISSRGIFKAFQRSRGYSPMAFAK 52 (108)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHhCcCHHHHHH
Confidence 4789999999999999999999987 985433333
No 19
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=90.27 E-value=0.26 Score=31.17 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=22.4
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
+.+++..|+|..||||..+++++.++
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~r 54 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVAR 54 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34899999999999999999877654
No 20
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=90.24 E-value=0.24 Score=34.73 Aligned_cols=28 Identities=11% Similarity=0.073 Sum_probs=25.7
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc-CCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL-NIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l-GI~ 35 (168)
.+++.+.|+.+|||.+.|.|++++. |+.
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~fk~~~G~s 51 (113)
T 3oio_A 23 PLSTDDIAYYVGVSRRQLERLFKQYLGTV 51 (113)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 4789999999999999999999998 884
No 21
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=90.16 E-value=0.96 Score=32.19 Aligned_cols=27 Identities=11% Similarity=0.143 Sum_probs=23.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
.+++.|+|+.+|||+.+|....+ .|+-
T Consensus 2 ~~~i~e~A~~~gvs~~tLR~ye~-~Gll 28 (109)
T 1r8d_A 2 KYQVKQVAEISGVSIRTLHHYDN-IELL 28 (109)
T ss_dssp CBCHHHHHHHHSCCHHHHHHHHH-TTSS
T ss_pred CccHHHHHHHHCcCHHHHHHHHH-CCCC
Confidence 47899999999999999998876 5753
No 22
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=90.03 E-value=0.38 Score=29.54 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=24.7
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++.-.++.+.++|+.+||+.+++.++.+
T Consensus 9 ~r~~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 9 IREKKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4566789999999999999999999876
No 23
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=89.79 E-value=0.24 Score=32.05 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=21.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
+++..|+|+.||||..+++.+-++
T Consensus 25 g~s~~eIA~~lgis~~tV~~~~~r 48 (68)
T 2p7v_B 25 DYTLEEVGKQFDVTRERIRQIEAK 48 (68)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 899999999999999988876543
No 24
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=89.68 E-value=0.65 Score=33.10 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=23.4
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
.+++.|+|+.+|||+.+|....+. |+-
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~-Gll 27 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDI-GLL 27 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH-TSS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHC-CCC
Confidence 378999999999999999988776 753
No 25
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=89.65 E-value=0.3 Score=33.48 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=25.1
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHc-CC
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCREL-NI 34 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~l-GI 34 (168)
..|+++|||.-||||.++|.++.++. +.
T Consensus 15 ~~LTi~EaAeylgIg~~~l~~L~~~~~~~ 43 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAEENKNA 43 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHHHCTTC
T ss_pred ceeCHHHHHHHHCcCHHHHHHHHHcCCCC
Confidence 45789999999999999999999996 44
No 26
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=89.50 E-value=1.1 Score=31.52 Aligned_cols=25 Identities=0% Similarity=0.139 Sum_probs=22.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
++++.++|+.||||.+++.+..+++
T Consensus 22 G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 22 NVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 6899999999999999999988764
No 27
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=89.20 E-value=0.34 Score=33.07 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=21.9
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
+-+++..|+|+.||||..++|.+.+
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4489999999999999999997654
No 28
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=88.78 E-value=0.31 Score=33.39 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=19.9
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+.++.++|+.|||+.++|.+..+++
T Consensus 38 g~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 38 GESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5788888999999888888776543
No 29
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=88.66 E-value=0.3 Score=31.13 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=18.4
Q ss_pred HHHHHHHcCCChhHHHHHHHH
Q 036926 11 ITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 11 i~eAAr~LgVs~T~LKr~CR~ 31 (168)
+.++|+.+||+.++|.+..++
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 889999999999999887664
No 30
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=88.59 E-value=0.55 Score=34.00 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=21.2
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
+-+++..|+|+.||||.++++++.+
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~~l~ 63 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYDNIR 63 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4589999999999999998886544
No 31
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=88.40 E-value=0.38 Score=29.96 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=21.8
Q ss_pred ccCcHHHHHHHcCCChhHHHH----HHHHcCC
Q 036926 7 FYMPITKAAKELNVGLTLLKK----RCRELNI 34 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr----~CR~lGI 34 (168)
-+++.+|+|+.||||..+++. ..+++|+
T Consensus 12 ~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 12 EGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp TSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 478999999999999877664 4445555
No 32
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=88.16 E-value=0.35 Score=34.84 Aligned_cols=28 Identities=7% Similarity=0.047 Sum_probs=25.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc-CCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL-NIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l-GI~ 35 (168)
.+.+.++|+.+|||.+.|.|++++. |+.
T Consensus 27 ~~sl~~lA~~~~~S~~~l~r~fk~~~G~s 55 (129)
T 1bl0_A 27 PLSLEKVSERSGYSKWHLQRMFKKETGHS 55 (129)
T ss_dssp CCCCHHHHHHSSSCHHHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 3788999999999999999999987 984
No 33
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=87.66 E-value=0.48 Score=30.96 Aligned_cols=24 Identities=4% Similarity=0.014 Sum_probs=20.9
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
+++..|+|..||||..+++.+.++
T Consensus 30 ~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 30 EHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 799999999999999998876543
No 34
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=87.59 E-value=0.64 Score=29.55 Aligned_cols=28 Identities=14% Similarity=-0.014 Sum_probs=24.4
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++.-.++.+.++|+.+||+.+++.++.+
T Consensus 18 ~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 18 IRTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 4556789999999999999999999865
No 35
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=87.58 E-value=0.71 Score=29.38 Aligned_cols=28 Identities=7% Similarity=0.065 Sum_probs=24.5
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++.-.++.+.+.|+.+||+.+++.++.+
T Consensus 15 ~r~~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 15 LITQQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4556789999999999999999999875
No 36
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=87.53 E-value=0.38 Score=31.52 Aligned_cols=38 Identities=11% Similarity=0.200 Sum_probs=29.8
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhh
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKL 42 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKl 42 (168)
.++.-.++++.+.|+.+|||.+++.++-+ |- +-|-...
T Consensus 18 ~~R~~~gltq~elA~~~gvs~~tis~~E~--G~-~~p~~~~ 55 (73)
T 3fmy_A 18 KVRKKLSLTQKEASEIFGGGVNAFSRYEK--GN-AXPHPST 55 (73)
T ss_dssp HHHHHTTCCHHHHHHHHCSCTTHHHHHHT--TS-SCCCHHH
T ss_pred HHHHHcCCCHHHHHHHhCcCHHHHHHHHc--CC-CCCCHHH
Confidence 35677899999999999999999999865 54 3465433
No 37
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=87.34 E-value=0.45 Score=29.38 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=24.5
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++...++.+.++|+.+||+.+++.++.+
T Consensus 13 ~r~~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 13 RRKKLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 4566789999999999999999999865
No 38
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=87.22 E-value=0.37 Score=31.68 Aligned_cols=27 Identities=11% Similarity=0.211 Sum_probs=23.5
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 9 MPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
+.+.|+|+.||||.+++.+.+++-.+|
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~g~fP 37 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSGDLP 37 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCCCC
Confidence 678999999999999999999875454
No 39
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=87.15 E-value=0.46 Score=31.72 Aligned_cols=24 Identities=17% Similarity=0.034 Sum_probs=21.3
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+++.|+|+.+|||.+++-+++..-
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGK 24 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 478999999999999999999743
No 40
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=86.89 E-value=0.52 Score=29.42 Aligned_cols=29 Identities=14% Similarity=-0.043 Sum_probs=25.1
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.++...++.+.+.|+.+||+.+++.++-+
T Consensus 10 ~~r~~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 10 KRRIALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 34566789999999999999999999865
No 41
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=86.86 E-value=0.39 Score=34.57 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=30.4
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhh
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKL 42 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKl 42 (168)
.++.-.+|.+.++|+.||||.+++.++-+ |. +-|-...
T Consensus 78 ~~R~~~glsq~~la~~~g~s~~~i~~~E~--g~-~~p~~~~ 115 (133)
T 3o9x_A 78 KVRKKLSLTQKEASEIFGGGVNAFSRYEK--GN-AQPHPST 115 (133)
T ss_dssp HHHHHTTCCHHHHHHHHCSCTTHHHHHHH--TS-SCCCHHH
T ss_pred HHHHHcCCCHHHHHHHHCCCHHHHHHHHC--CC-CCCCHHH
Confidence 36778899999999999999999999876 54 3465444
No 42
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=86.85 E-value=0.51 Score=30.17 Aligned_cols=29 Identities=14% Similarity=0.027 Sum_probs=25.0
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
++.--++.+.+.|+.+||+.+++.++.+-
T Consensus 16 ~r~~~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 16 VLAEKGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HHHHHTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45566899999999999999999998763
No 43
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=86.84 E-value=0.89 Score=28.77 Aligned_cols=28 Identities=7% Similarity=0.035 Sum_probs=24.4
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++...++.+.++|+.+||+.+++.++.+
T Consensus 18 ~r~~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 18 VLAEKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4556789999999999999999998865
No 44
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=86.63 E-value=0.87 Score=28.57 Aligned_cols=28 Identities=7% Similarity=-0.136 Sum_probs=24.1
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++...++.+.++|+.+||+.+++.++.+
T Consensus 21 ~r~~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 21 LRTAKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4556689999999999999999999864
No 45
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=86.44 E-value=0.77 Score=28.97 Aligned_cols=28 Identities=11% Similarity=0.043 Sum_probs=24.4
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++..-++.+.++|+.+||+.+++.++.+
T Consensus 13 ~r~~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 13 RRKKLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4556689999999999999999999865
No 46
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=86.43 E-value=0.57 Score=29.05 Aligned_cols=28 Identities=4% Similarity=-0.047 Sum_probs=24.5
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++...++.+.++|+.+||+.+++.++.+
T Consensus 9 ~r~~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 9 KRIQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4566789999999999999999999865
No 47
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=86.39 E-value=0.88 Score=29.59 Aligned_cols=30 Identities=20% Similarity=-0.047 Sum_probs=25.5
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
++.--++.+.+.|+.+||+.+++.++- .|-
T Consensus 19 ~R~~~glsq~~lA~~~gis~~~i~~~e--~g~ 48 (82)
T 3s8q_A 19 IRLEKGMTQEDLAYKSNLDRTYISGIE--RNS 48 (82)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHH--TTC
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHH--CCC
Confidence 456678999999999999999999985 465
No 48
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=86.35 E-value=1.1 Score=31.28 Aligned_cols=30 Identities=10% Similarity=-0.003 Sum_probs=25.8
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHHH
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
+++.--++.+.+.|+.+|||.+++.++.+-
T Consensus 31 ~lR~~~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 31 KLLIDRDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 345667899999999999999999999873
No 49
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=86.11 E-value=0.74 Score=29.86 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=22.4
Q ss_pred hccCcHHHHHHHcCCChhHHHHH----HHHcCC
Q 036926 6 YFYMPITKAAKELNVGLTLLKKR----CRELNI 34 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~----CR~lGI 34 (168)
+.+++.+|+|+.||||..+++.. .+++++
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 45899999999999998777654 445554
No 50
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=85.56 E-value=0.72 Score=30.13 Aligned_cols=28 Identities=11% Similarity=0.038 Sum_probs=24.9
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++...++.+.++|+.+||+.+++.++.+
T Consensus 20 ~r~~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 20 VRQQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4556789999999999999999999887
No 51
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=85.56 E-value=1.1 Score=30.25 Aligned_cols=28 Identities=14% Similarity=0.125 Sum_probs=24.7
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++...++.+.++|+.+||+.+++.++.+
T Consensus 17 ~r~~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 17 YIAKSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp HHTTSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 4566789999999999999999999876
No 52
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=85.49 E-value=0.6 Score=30.24 Aligned_cols=29 Identities=10% Similarity=0.049 Sum_probs=25.1
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.++..-++.+.+.|+.+||+.+++.++.+
T Consensus 9 ~~r~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 9 VERIRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 35566789999999999999999999875
No 53
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=85.32 E-value=0.76 Score=29.24 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=19.3
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
-+++..|+|+.||||.+++++..+
T Consensus 25 ~g~s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 25 QDKTTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHH
Confidence 478999999999999877665443
No 54
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=85.31 E-value=2.4 Score=31.99 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=24.7
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCch
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHR 40 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~R 40 (168)
.++|.|+|+.+||++.+|...-+ .|+-.=|.|
T Consensus 16 ~~~I~evA~~~gvs~~tLR~Ye~-~Gll~p~~r 47 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIRYYDK-QGLFPFLQR 47 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHH-TTCCTTCEE
T ss_pred ceeHHHHHHHHCcCHHHHHHHHH-CCCCCCCcC
Confidence 47899999999999999987765 464333544
No 55
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=85.25 E-value=0.64 Score=31.81 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=22.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
++++.++|+.||||.+++.+..+++
T Consensus 33 g~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 33 GIRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999999887764
No 56
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=85.14 E-value=0.68 Score=29.90 Aligned_cols=29 Identities=10% Similarity=-0.003 Sum_probs=25.1
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.++...++.+.++|+.+||+.+++.++.+
T Consensus 17 ~~r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 17 KLRKEASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 35566799999999999999999999865
No 57
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=85.06 E-value=0.75 Score=31.24 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=20.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
+++..|+|..||||..+++.+-+
T Consensus 38 ~~s~~EIA~~lgis~~tV~~~~~ 60 (87)
T 1tty_A 38 PKTLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Confidence 69999999999999988887644
No 58
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=84.96 E-value=0.98 Score=29.51 Aligned_cols=32 Identities=9% Similarity=0.036 Sum_probs=27.1
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
+++...+ .+.+.|+.+||+.+++-++.+--.+
T Consensus 6 ~~r~~~g-sq~~lA~~lgvs~~~is~~e~g~~~ 37 (79)
T 3bd1_A 6 IAINKLG-SVSALAASLGVRQSAISNWRARGRV 37 (79)
T ss_dssp HHHHHHS-SHHHHHHHHTCCHHHHHHHHHHTCC
T ss_pred HHHHHhC-CHHHHHHHHCCCHHHHHHHHHCCCC
Confidence 3566778 9999999999999999999886545
No 59
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=84.68 E-value=0.82 Score=30.86 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=20.0
Q ss_pred hccCcHHHHHHHcCCChhHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRC 29 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~C 29 (168)
+-+++.+|+|+.||||..+++...
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l 57 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHV 57 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 458999999999999998776544
No 60
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=84.42 E-value=0.74 Score=33.90 Aligned_cols=27 Identities=15% Similarity=0.006 Sum_probs=22.7
Q ss_pred hhccCcHHHHHHHcCCChhHHHHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
-+-+++.+|+|..||||..++|.+-.+
T Consensus 106 ~~~g~s~~EIA~~lgis~~tV~~~l~r 132 (157)
T 2lfw_A 106 AMEGFSPEDAAYLIEVDTSEVETLVTE 132 (157)
T ss_dssp SSSCCCHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345899999999999999999976543
No 61
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=84.34 E-value=0.68 Score=34.13 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=21.4
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+++.|+|+.||||.+++-|+-|-+
T Consensus 59 ~TQREIA~~lGiS~stISRi~r~L 82 (101)
T 1jhg_A 59 MSQRELKNELGAGIATITRGSNSL 82 (101)
T ss_dssp SCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhhhHHHHHH
Confidence 899999999999999999886554
No 62
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=84.28 E-value=0.79 Score=36.04 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=25.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
.+++.+.|+.+|||++.|.|.+++.|+.
T Consensus 185 ~~sl~~lA~~~~~S~~~l~r~fk~~G~t 212 (276)
T 3gbg_A 185 NWRWADICGELRTNRMILKKELESRGVK 212 (276)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHcCCC
Confidence 4789999999999999999999998875
No 63
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=84.22 E-value=1.9 Score=26.89 Aligned_cols=28 Identities=7% Similarity=-0.012 Sum_probs=24.4
Q ss_pred hhhhccCcHHHHHHHcC--CChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELN--VGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~Lg--Vs~T~LKr~CR 30 (168)
++.-.++.+.+.|+.+| |+.+++.++-+
T Consensus 16 ~r~~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 16 IRTQQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HHHHTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 45567899999999999 99999998866
No 64
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=83.91 E-value=1 Score=31.31 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=22.7
Q ss_pred ccCcHHHHHHHcCCChhHH----HHHHHHcCC
Q 036926 7 FYMPITKAAKELNVGLTLL----KKRCRELNI 34 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~L----Kr~CR~lGI 34 (168)
-+++.+|+|+.||||..++ +++.+++|+
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3789999999999998664 566677777
No 65
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=83.83 E-value=0.82 Score=30.16 Aligned_cols=30 Identities=13% Similarity=0.078 Sum_probs=25.7
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHHH
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
+++.--+|.+.++|+.+||+.+++.++.+-
T Consensus 17 ~~R~~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 17 QYRKEKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 356667899999999999999999998753
No 66
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=83.76 E-value=1.4 Score=29.98 Aligned_cols=40 Identities=15% Similarity=0.013 Sum_probs=29.8
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHHHcC-CCCCCchhhh
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCRELN-IRRWPHRKLM 43 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR~lG-I~RWP~RKlk 43 (168)
.++...++.+.+.|+.+|||.+++.++.+ | ....+...+.
T Consensus 8 ~~r~~~gltq~~lA~~~gis~~~i~~~e~--g~~~~p~~~~l~ 48 (111)
T 1b0n_A 8 QYRKEKGYSLSELAEKAGVAKSYLSSIER--NLQTNPSIQFLE 48 (111)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHT--TCCSCCCHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHc--CCCCCCCHHHHH
Confidence 35566799999999999999999999875 5 4333333333
No 67
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=83.10 E-value=0.94 Score=30.06 Aligned_cols=28 Identities=21% Similarity=0.017 Sum_probs=24.6
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++...++.+.++|+.+||+.+++.++.+
T Consensus 26 ~r~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 26 HLRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4566789999999999999999999876
No 68
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=83.09 E-value=1.5 Score=28.39 Aligned_cols=28 Identities=11% Similarity=-0.012 Sum_probs=24.6
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++.--++++.++|+.+||+.+++.++-+
T Consensus 22 ~R~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 22 ARSAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4556789999999999999999999875
No 69
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=83.00 E-value=1.9 Score=28.10 Aligned_cols=28 Identities=7% Similarity=0.110 Sum_probs=24.0
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++.-.++.+.+.|+.+||+.+++.++.+
T Consensus 20 ~r~~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 20 KKNELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3455689999999999999999998864
No 70
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=83.00 E-value=0.54 Score=32.68 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=22.1
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 9 MPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.++.++|+.+||+.++|.+..+++.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6899999999999999998888754
No 71
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=82.94 E-value=1.6 Score=30.23 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=25.7
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
++.-.++.+.+.|+.+|||.+++.++.+-
T Consensus 17 ~r~~~glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 17 LKKEHGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 55667999999999999999999999873
No 72
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=82.58 E-value=1 Score=31.16 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=20.5
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
+-+++.+|+|+.||||..+++...+
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~ 64 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVS 64 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4589999999999999987765543
No 73
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=82.51 E-value=1.4 Score=33.27 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=23.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRR 36 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~R 36 (168)
.++|.|+|+.+||++.+|...-+. |+-.
T Consensus 2 ~~~I~e~A~~~gvs~~tLR~Ye~~-GLl~ 29 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYERI-GLIP 29 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHH-TSSC
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHC-CCCC
Confidence 478999999999999999988777 6433
No 74
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=82.41 E-value=1.1 Score=31.86 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=23.4
Q ss_pred ccCcHHHHHHHcCCChhHH----HHHHHHcCCC
Q 036926 7 FYMPITKAAKELNVGLTLL----KKRCRELNIR 35 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~L----Kr~CR~lGI~ 35 (168)
-+++.+|+|+.||||..++ +++.+++|+.
T Consensus 48 ~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4889999999999998764 5666777873
No 75
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=82.38 E-value=0.97 Score=30.96 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=24.9
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.++...++.+.+.|+.+||+.+++.++-+
T Consensus 37 ~~R~~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 37 IIRRALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 35666799999999999999999999844
No 76
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=82.12 E-value=2.8 Score=31.10 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.4
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 9 MPITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
|+|.|+|+.+||++.+|...-+. |+
T Consensus 1 ~~I~e~A~~~gvs~~tLR~ye~~-Gl 25 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEK-GL 25 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHT-TC
T ss_pred CCHHHHHHHHCcCHHHHHHHHHC-CC
Confidence 57899999999999999987664 64
No 77
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=81.89 E-value=1.2 Score=29.87 Aligned_cols=30 Identities=10% Similarity=-0.065 Sum_probs=25.5
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
++.-.++++.+.|+.+|||.+++.++- .|-
T Consensus 22 ~R~~~gltq~elA~~~gis~~~is~~E--~G~ 51 (86)
T 3eus_A 22 ARLDAGLTQADLAERLDKPQSFVAKVE--TRE 51 (86)
T ss_dssp HHHHTTCCHHHHHHHTTCCHHHHHHHH--TTS
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHH--CCC
Confidence 456679999999999999999999985 454
No 78
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=81.80 E-value=1.1 Score=31.09 Aligned_cols=28 Identities=14% Similarity=0.055 Sum_probs=25.2
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++...++++.+.|+.+||+.+++.++.+
T Consensus 19 ~r~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 19 YLEPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 5667899999999999999999999876
No 79
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=81.78 E-value=1.2 Score=29.98 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=21.3
Q ss_pred cHHHHHHHcCCChhHHHHHHHHc
Q 036926 10 PITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+.+||+.|||+.+++-+.||..
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~ 37 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRG 37 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHhc
Confidence 88999999999999999999864
No 80
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=81.58 E-value=1.8 Score=28.55 Aligned_cols=27 Identities=7% Similarity=0.078 Sum_probs=23.8
Q ss_pred hhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 4 SQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 4 ~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
+.-.++.+.+.|+.+||+.+++.++.+
T Consensus 26 R~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 26 KNELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 455699999999999999999999875
No 81
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=81.18 E-value=1.3 Score=29.74 Aligned_cols=28 Identities=4% Similarity=0.078 Sum_probs=24.6
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++...++.+.+.|+.+||+.+++.++.+
T Consensus 16 ~r~~~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 16 SLDELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HHHHHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 4556789999999999999999999876
No 82
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=81.11 E-value=1.3 Score=32.19 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=21.7
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
-+++..|+|+.||||.++++++.++
T Consensus 37 ~g~s~~EIA~~lgiS~~tV~~~l~r 61 (113)
T 1s7o_A 37 DDYSLAEIADEFGVSRQAVYDNIKR 61 (113)
T ss_dssp TCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4899999999999999998876654
No 83
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=80.84 E-value=3.8 Score=33.56 Aligned_cols=27 Identities=19% Similarity=0.208 Sum_probs=23.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
.++|.|+|+.+|||+.+|.-.-+ .|+-
T Consensus 3 ~~tI~evA~~~gvs~~TLRyYe~-~GLL 29 (249)
T 3qao_A 3 AMQIKELAELTGVSVRTLHHYDK-IGLL 29 (249)
T ss_dssp CBCHHHHHHHHCCCHHHHHHHHH-TTSS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH-CCCC
Confidence 47899999999999999987766 7753
No 84
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=80.61 E-value=1.5 Score=29.17 Aligned_cols=30 Identities=10% Similarity=-0.074 Sum_probs=25.6
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHHH
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
.++...++.+.+.|+.+||+.+++.++.+-
T Consensus 20 ~~r~~~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 20 QGRQSKGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp HHHHTTTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 355667899999999999999999998763
No 85
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=80.54 E-value=1.2 Score=32.31 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=22.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
++++.++|+.||||.+++.+..+++
T Consensus 48 G~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 48 GVRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999999887764
No 86
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=80.15 E-value=1.6 Score=27.38 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=22.1
Q ss_pred hhccCcHHHHHHHcCCChhHHHHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
.-.+ .+.++|+.|||+.+++-+..|-
T Consensus 11 ~~~g-s~~~~A~~lgis~~~vs~~~~~ 36 (67)
T 2pij_A 11 EEHG-TQSALAAALGVNQSAISQMVRA 36 (67)
T ss_dssp HHTC-CHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHcC-CHHHHHHHHCcCHHHHHHHHcC
Confidence 3446 8999999999999999999863
No 87
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=80.13 E-value=18 Score=29.03 Aligned_cols=69 Identities=7% Similarity=0.020 Sum_probs=42.4
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHc--------------CCCCCCchhhhcHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCREL--------------NIRRWPHRKLMSLQTLIKNVQELQTEGEGSEERLREALGI 72 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~l--------------GI~RWP~RKlkSL~~li~~l~~~~~~g~~s~~~l~~ai~~ 72 (168)
-++.+.|+|+.||||.+++-|.-... |+ .+.-+..|.++.+.+ ......+.+.++.
T Consensus 23 ~g~tQ~eIA~~lGiSr~~VSR~L~~A~~~~~lv~lfp~~~~l---s~p~~~~L~k~~~~l-------~~~~~~l~eLi~~ 92 (192)
T 1zx4_A 23 DGMSQKDIAAKEGLSQAKVTRALQAASAPEELVALFPVQSEL---TFSDYKTLCAVGDEM-------GNKNLEFDQLIQN 92 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHTSCHHHHTTCSCGGGC---CHHHHHHHHHHHHHT-------TTCHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHHHhccchhhHHHcCCcccC---ccchHHHHHHHHHHh-------hhcCCCHHHHHHH
Confidence 47999999999999999888865443 33 233444444333322 1223345566777
Q ss_pred HHHHHHHHhhCCC
Q 036926 73 LERERKLIEERPD 85 (168)
Q Consensus 73 Lerek~lIee~P~ 85 (168)
+..+...+.+..+
T Consensus 93 ~~~~i~~~~~~~~ 105 (192)
T 1zx4_A 93 ISPEINDILSINE 105 (192)
T ss_dssp HHHHHHHHHHC-C
T ss_pred HHHHHHHHhhccc
Confidence 7777777655544
No 88
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=79.93 E-value=1.2 Score=32.37 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=22.0
Q ss_pred cCc-HHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMP-ITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lP-i~eAAr~LgVs~T~LKr~CR~l 32 (168)
.|| ..+.|+.||||.+++.+..++|
T Consensus 36 ~Lps~~~La~~~~vSr~tvr~Al~~L 61 (125)
T 3neu_A 36 KLPSVREMGVKLAVNPNTVSRAYQEL 61 (125)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 577 9999999999999999887765
No 89
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=79.82 E-value=1.8 Score=27.01 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=25.4
Q ss_pred ccCcHHHHHHHc-----CCChhHHHHHHHHcCC
Q 036926 7 FYMPITKAAKEL-----NVGLTLLKKRCRELNI 34 (168)
Q Consensus 7 F~lPi~eAAr~L-----gVs~T~LKr~CR~lGI 34 (168)
-++.+.|.|+.| |||.+|+.|--.++|+
T Consensus 18 ~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg~ 50 (64)
T 2p5k_A 18 EIETQDELVDMLKQDGYKVTQATVSRDIKELHL 50 (64)
T ss_dssp CCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCC
Confidence 378899999999 9999999999998885
No 90
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=79.57 E-value=1.2 Score=30.44 Aligned_cols=25 Identities=8% Similarity=0.001 Sum_probs=20.7
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.++..|.|+.|||+.+++.+.-.+|
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~~L~~L 55 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINRVLYSL 55 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4788999999999999888876654
No 91
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=79.43 E-value=1.1 Score=30.45 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=22.4
Q ss_pred hccCcHHHHHHHcCCChhHHHHH----HHHcCC
Q 036926 6 YFYMPITKAAKELNVGLTLLKKR----CRELNI 34 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~----CR~lGI 34 (168)
+-+++.+|+|+.||||..++|.. .+++|+
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 45899999999999998776654 445555
No 92
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=79.41 E-value=1.4 Score=33.06 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=26.3
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
|+.-.-+|..+.|+.||+|.+++.++-++|
T Consensus 12 L~~~~~~s~~~la~~lg~s~~tv~~rl~~L 41 (162)
T 3i4p_A 12 LQEDSTLAVADLAKKVGLSTTPCWRRIQKM 41 (162)
T ss_dssp HTTCSCSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 455677899999999999999999988877
No 93
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=79.06 E-value=1.5 Score=29.34 Aligned_cols=29 Identities=14% Similarity=0.016 Sum_probs=24.7
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.++...++.+.+.|+.+||+.+++.++.+
T Consensus 11 ~~r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 11 LMRKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHHHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 35566799999999999999999988755
No 94
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=78.55 E-value=1.7 Score=29.77 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=25.4
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
+-.+|+ .+.++|+.||||..++-+..+..+||
T Consensus 6 ai~~~G-~~~~lA~~lGVs~~aVs~W~~g~~iP 37 (71)
T 2hin_A 6 LVRHFG-DVEKAAVGVGVTPGAVYQWLQAGEIP 37 (71)
T ss_dssp HHHHHS-SHHHHHHHHTSCHHHHHHHHHHTSCC
T ss_pred HHHHHC-CHHHHHHHHCCCHHHHHHHHhCCCCC
Confidence 344554 38999999999999999887667786
No 95
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=78.47 E-value=1.5 Score=33.07 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=24.3
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCc
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIRRWPH 39 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~ 39 (168)
+.-.+.|||+.||++.+++.++|.. ..||-
T Consensus 82 ~f~S~~eAar~lg~s~~ti~~~~~~---~k~~~ 111 (116)
T 1i3j_A 82 IFDCAADAARHFKISSGLVTYRVKS---DKWNW 111 (116)
T ss_dssp EESSHHHHHHHHTCCHHHHHHHHHC---TTCCE
T ss_pred EEcCHHHHHHHHCCCchhHHHHHhc---CCCCC
Confidence 4457899999999999999999964 35663
No 96
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=78.41 E-value=0.88 Score=30.81 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=21.4
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
-++.+.+.|+.+|||.++|.+.+.
T Consensus 21 ~glT~~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANALE 44 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 478999999999999999998755
No 97
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=78.27 E-value=1.8 Score=30.67 Aligned_cols=29 Identities=3% Similarity=0.074 Sum_probs=25.6
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.++.-.++.+.++|+.+|||.+++.++-+
T Consensus 30 ~~R~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 30 ELRTDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 35667799999999999999999999876
No 98
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=78.04 E-value=1 Score=30.20 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=21.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
.+++.|+|+.+|||.+++-+.+..
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln~ 32 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALMN 32 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTTC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHcC
Confidence 468999999999999999988753
No 99
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=77.99 E-value=2.1 Score=30.01 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=30.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcC--CCCCCchhhh
Q 036926 9 MPITKAAKELNVGLTLLKKRCRELN--IRRWPHRKLM 43 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~lG--I~RWP~RKlk 43 (168)
|.+..||+..||..+||-.+.+... +.+=|+|+|+
T Consensus 31 mS~~~Aak~yGVP~sTL~~RVk~~~~~~~~~~~~~~~ 67 (70)
T 2cob_A 31 MSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMK 67 (70)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHHHTTTTSSCCCSCCC
T ss_pred ccHHHHHHHhCCChHHHHHHHHhhcccccCCcccccC
Confidence 8899999999999999987777665 6888888875
No 100
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=77.15 E-value=1.7 Score=30.24 Aligned_cols=25 Identities=8% Similarity=0.001 Sum_probs=20.4
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.++..+.|++|||+.+++.+.-.+|
T Consensus 27 ~~t~~eLA~~Lgvsr~tV~~~L~~L 51 (81)
T 1qbj_A 27 ATTAHDLSGKLGTPKKEINRVLYSL 51 (81)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4788999999999998888766554
No 101
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=76.86 E-value=1.8 Score=32.52 Aligned_cols=33 Identities=9% Similarity=-0.001 Sum_probs=26.9
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCch
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHR 40 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~R 40 (168)
+++..++|+.+|+|.+++.|..|.+.-.-=.||
T Consensus 58 G~SyreIa~~tG~StaTIsRv~r~L~~g~~gy~ 90 (107)
T 3frw_A 58 KRTYLDISEKTGASTATISRVNRSLNYGNDGYE 90 (107)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHHHHHHSCSHHH
T ss_pred CCCHHHHHHHHCccHHHHHHHHHHHHccChHHH
Confidence 689999999999999999999887765333344
No 102
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=76.64 E-value=1.2 Score=32.71 Aligned_cols=25 Identities=12% Similarity=0.042 Sum_probs=23.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
++++.++|+.||||.+++.+..+++
T Consensus 41 G~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 41 GVRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp TCCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999999999875
No 103
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=76.51 E-value=1.9 Score=30.02 Aligned_cols=28 Identities=21% Similarity=0.007 Sum_probs=24.5
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++.--++.+.+.|+.+||+.+++.++-+
T Consensus 36 ~R~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 36 IRLEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4566789999999999999999999864
No 104
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=76.40 E-value=1.1 Score=28.81 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=19.2
Q ss_pred CcHHHHHHHcCCChhHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRC 29 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~C 29 (168)
+.+.+.|+.||||.+++-+.+
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 589999999999999998876
No 105
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=76.29 E-value=1.4 Score=34.85 Aligned_cols=42 Identities=7% Similarity=-0.007 Sum_probs=31.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc-CCCCCCchhhhcHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL-NIRRWPHRKLMSLQTLI 49 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l-GI~RWP~RKlkSL~~li 49 (168)
.+.+.+.|+.+|+|...|.|++++. |++--=|.+...|.+..
T Consensus 19 ~~~~~~la~~~~~s~~~l~r~f~~~~g~s~~~~~~~~Rl~~a~ 61 (292)
T 1d5y_A 19 PLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSA 61 (292)
T ss_dssp SCCCHHHHTTTSSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5789999999999999999999987 88533333333343333
No 106
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=76.17 E-value=2 Score=31.87 Aligned_cols=30 Identities=7% Similarity=0.118 Sum_probs=24.4
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
|+....+|..|.|+.||+|.+++.++.++|
T Consensus 19 L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 48 (162)
T 2p5v_A 19 LQENGRLTNVELSERVALSPSPCLRRLKQL 48 (162)
T ss_dssp HHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 445556899999999999999988877654
No 107
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=75.93 E-value=2.3 Score=31.62 Aligned_cols=29 Identities=7% Similarity=-0.046 Sum_probs=25.6
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
++.-.++++.++|+.+|||.+++.++-+-
T Consensus 76 ~R~~~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 76 LRMKKGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HHHHTTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 55678999999999999999999999763
No 108
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=75.85 E-value=1.9 Score=32.84 Aligned_cols=33 Identities=9% Similarity=-0.022 Sum_probs=26.6
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCch
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHR 40 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~R 40 (168)
+++..|+|+++|+|.+|+-|..|.+.-.-=-||
T Consensus 75 G~syreIA~~~g~S~aTIsRv~r~L~~g~~gy~ 107 (119)
T 3kor_A 75 GYTYATIEQESGASTATISRVKRSLQWGNDAYT 107 (119)
T ss_dssp TCCHHHHHHHHCCCHHHHHHHHHHHHSSCSHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHhcCChHHH
Confidence 689999999999999999999887765333333
No 109
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=75.81 E-value=2.1 Score=35.66 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=26.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc-CCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL-NIRR 36 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l-GI~R 36 (168)
.+.+.+.|+.+|+|.+.|.|++++. |+.-
T Consensus 321 ~~~~~~~a~~~~~s~~~l~r~f~~~~g~s~ 350 (412)
T 4fe7_A 321 GIKVDQVLDAVGISRSNLEKRFKEEVGETI 350 (412)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHSSCH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 5789999999999999999999988 9853
No 110
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=75.71 E-value=2.2 Score=30.55 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=21.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
+++..|+|..||||..++|.+-++
T Consensus 39 ~~s~~EIA~~lgiS~~tVr~~~~r 62 (99)
T 3t72_q 39 DYTLEEVGKQFDVTRERIRQIEAK 62 (99)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 599999999999999999887643
No 111
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=75.59 E-value=1.5 Score=26.43 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.8
Q ss_pred cHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 10 PITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
.+.+.|++||++.-.|-....+.||
T Consensus 4 rv~~lAkel~~~~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQFADAGI 28 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHHHHHTS
T ss_pred cHHHHHHHHCcCHHHHHHHHHHcCC
Confidence 4678999999999999999999998
No 112
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=75.45 E-value=2.1 Score=30.36 Aligned_cols=28 Identities=14% Similarity=0.059 Sum_probs=24.8
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++.-.++.+.+.|+.+|||.+++-++.+
T Consensus 22 lr~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 22 LGFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp HHHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 5566799999999999999999999875
No 113
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=75.27 E-value=2.1 Score=29.27 Aligned_cols=28 Identities=14% Similarity=0.083 Sum_probs=24.4
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++.-.++.+.+.|+.+|||.+++-++.+
T Consensus 26 ~r~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 26 ILDDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4556789999999999999999999865
No 114
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=75.26 E-value=3 Score=29.18 Aligned_cols=28 Identities=11% Similarity=-0.032 Sum_probs=24.5
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++.--++.+.++|+.+||+.+++.++-+
T Consensus 29 ~R~~~gltq~elA~~~gis~~~is~~E~ 56 (114)
T 3vk0_A 29 FRVNKGWSQEELARQCGLDRTYVSAVER 56 (114)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4566789999999999999999999865
No 115
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=75.16 E-value=2.2 Score=30.63 Aligned_cols=28 Identities=7% Similarity=0.119 Sum_probs=24.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHH-cCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRE-LNIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~-lGI~ 35 (168)
++++.++|..+|+|.+.|-|.+++ .|+.
T Consensus 93 ~~sl~~lA~~~g~S~~~f~r~Fk~~~G~t 121 (133)
T 1u8b_A 93 PVTLEALADQVAMSPFHLHRLFKATTGMT 121 (133)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 589999999999999999999965 5664
No 116
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=74.86 E-value=3 Score=29.22 Aligned_cols=27 Identities=7% Similarity=0.067 Sum_probs=23.7
Q ss_pred cCcHHHHHHHcC--CChhHHHHHHHHcCC
Q 036926 8 YMPITKAAKELN--VGLTLLKKRCRELNI 34 (168)
Q Consensus 8 ~lPi~eAAr~Lg--Vs~T~LKr~CR~lGI 34 (168)
.+...++|.+|| ||.+++.++.+++|+
T Consensus 77 ~~s~~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 77 CKTARDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CCCHHHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHCCCccHHHHHHHHHHCCC
Confidence 367889999999 899999999999998
No 117
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=74.57 E-value=2.6 Score=29.77 Aligned_cols=29 Identities=3% Similarity=-0.043 Sum_probs=24.7
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.++.--++.+.+.|+.+|||.+++.++-+
T Consensus 19 ~~R~~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 19 EARKKQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 35566799999999999999999988764
No 118
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=74.52 E-value=2.2 Score=32.56 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=24.7
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
|+..-.+|..|.|++||+|.+++.++.++|
T Consensus 36 L~~~~~~s~~eLA~~lglS~~tv~~rl~~L 65 (171)
T 2e1c_A 36 LQNDGKAPLREISKITGLAESTIHERIRKL 65 (171)
T ss_dssp HHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344457899999999999999998887754
No 119
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=74.49 E-value=2.4 Score=30.76 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=24.2
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
|+....+|..+.|+.||+|.+++.++.++|
T Consensus 12 L~~~~~~~~~ela~~lg~s~~tv~~~l~~L 41 (150)
T 2pn6_A 12 LQYNAKYSLDEIAREIRIPKATLSYRIKKL 41 (150)
T ss_dssp HTTCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344456899999999999999988877654
No 120
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=74.36 E-value=2.3 Score=33.42 Aligned_cols=24 Identities=21% Similarity=0.107 Sum_probs=21.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
++++.++|+.||||.++|.+.-++
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHc
Confidence 589999999999999999877664
No 121
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=74.11 E-value=2.3 Score=30.33 Aligned_cols=30 Identities=7% Similarity=-0.043 Sum_probs=25.8
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.++.--+|.+.+.|+.+|||.+++.++ +.|
T Consensus 43 ~~R~~~glTQ~eLA~~~gvs~~~is~~--E~G 72 (101)
T 4ghj_A 43 QARLNRDLTQSEVAEIAGIARKTVLNA--EKG 72 (101)
T ss_dssp HHHHHTTCCHHHHHHHHTSCHHHHHHH--HTT
T ss_pred HHHHHcCCCHHHHHHHcCCCHHHHHHH--HCC
Confidence 356677999999999999999999988 557
No 122
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=74.01 E-value=4.9 Score=29.31 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=42.7
Q ss_pred CchhhhcHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCCC-C----------CcHHHHHHHHHHHHHh
Q 036926 38 PHRKLMSLQTLIKNVQELQTEGEGSEERLREALGILERERKLIEERPDL-E----------MEDTTKRLRQACFKAN 103 (168)
Q Consensus 38 P~RKlkSL~~li~~l~~~~~~g~~s~~~l~~ai~~Lerek~lIee~P~~-~----------L~~~tKrlRQa~FK~~ 103 (168)
|.|+.++|...|..|+.-.. +.....+-|++-+.+..+||.+ + ....+.+|+...||..
T Consensus 13 peqRkkkL~~Ki~el~~ei~-------ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q 82 (98)
T 2ke4_A 13 PEQQRKRLQQQLEERSRELQ-------KEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYE 82 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999988876443 2233456678888999999976 2 2236788888888863
No 123
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=74.00 E-value=2.6 Score=32.18 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=24.7
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCch
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHR 40 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~R 40 (168)
.++|.|+|+.+||++.+|...-+. |+-. |.|
T Consensus 11 ~~~i~e~A~~~gvs~~TLR~ye~~-Gll~-p~r 41 (154)
T 2zhg_A 11 LLTPGEVAKRSGVAVSALHFYESK-GLIT-SIR 41 (154)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHT-TSSC-CEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHc-CCCC-ccc
Confidence 378999999999999999887665 6433 544
No 124
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=73.78 E-value=2.5 Score=30.91 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=24.0
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
|+..-.+|..+.|+.||+|.+++.++.++|
T Consensus 16 L~~~~~~s~~ela~~lg~s~~tv~~~l~~L 45 (151)
T 2cyy_A 16 LQNDGKAPLREISKITGLAESTIHERIRKL 45 (151)
T ss_dssp HHHCTTCCHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344456899999999999999988877654
No 125
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=73.72 E-value=2.4 Score=32.30 Aligned_cols=30 Identities=13% Similarity=0.228 Sum_probs=24.5
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
|+..-.+|..+.|+.||+|.+++.++.++|
T Consensus 26 L~~~~~~s~~eLA~~lglS~~tv~~~l~~L 55 (171)
T 2ia0_A 26 LKKDARLTISELSEQLKKPESTIHFRIKKL 55 (171)
T ss_dssp HHHCTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344456899999999999999988887754
No 126
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=73.34 E-value=2.6 Score=29.26 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=24.1
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++.--++.+.++|+.+|||.+++.++-+
T Consensus 36 ~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 36 FRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp HHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4556689999999999999999999864
No 127
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=72.90 E-value=2.8 Score=30.67 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=17.8
Q ss_pred cCcHHHHHHHcCCChhHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKR 28 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~ 28 (168)
++++.|+|++||||.+++-|.
T Consensus 34 g~tQ~eIA~~lGiSR~~Vsrl 54 (101)
T 2w7n_A 34 GKPQATFATSLGLTRGAVSQA 54 (101)
T ss_dssp CCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
Confidence 899999999999998766543
No 128
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=72.61 E-value=2.3 Score=27.90 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=20.7
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
++..|.|+.|||+.+++-+....|
T Consensus 26 ~s~~eLA~~lglsr~tv~~~l~~L 49 (67)
T 2heo_A 26 VAIFQLVKKCQVPKKTLNQVLYRL 49 (67)
T ss_dssp EEHHHHHHHHCSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 778999999999999988877654
No 129
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=72.54 E-value=2.9 Score=30.19 Aligned_cols=28 Identities=14% Similarity=0.024 Sum_probs=25.0
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++.--++.+.++|+.+||+.++|.++-+
T Consensus 15 ~R~~~glSq~eLA~~~gis~~~is~iE~ 42 (112)
T 2wus_R 15 KREERRITLLDASLFTNINPSKLKRIEE 42 (112)
T ss_dssp HHHTTTCCHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 5667799999999999999999999865
No 130
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=72.44 E-value=2.3 Score=31.03 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.4
Q ss_pred cCc-HHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMP-ITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lP-i~eAAr~LgVs~T~LKr~CR~l 32 (168)
-|| ..+.|+.||||.|++.+..++|
T Consensus 37 ~LPser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 37 KILSIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHCCCHHHHHHHHHHH
Confidence 465 7799999999999999988865
No 131
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=72.38 E-value=2.9 Score=29.80 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.6
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+|..+.|+.||||.+++.++.++|
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L 42 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKAL 42 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5799999999999999998877654
No 132
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=72.36 E-value=2.5 Score=33.67 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=29.4
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCch
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHR 40 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~R 40 (168)
+++.-.++++.++|+.||||.+++-+.-+ |...-|.-
T Consensus 97 ~lR~~~glTQ~elA~~LGvsr~tis~yE~--G~r~iP~~ 133 (170)
T 2auw_A 97 DWMHRNNLSLTTAAEALGISRRMVSYYRT--AHKIIPRT 133 (170)
T ss_dssp HHHHHTTCCHHHHHHHHTSCHHHHHHHHT--TSSCCCHH
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHc--CCCCCCHH
Confidence 46777899999999999999999988754 65445543
No 133
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=72.34 E-value=2.7 Score=30.60 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=24.6
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++...++.+.++|+.+||+.+++-++.+
T Consensus 48 ~R~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 48 VIDRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4566789999999999999999999865
No 134
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=72.27 E-value=2.4 Score=33.31 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.1
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 9 MPITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
|++.|+|+.|||+.+++.++-|+--+
T Consensus 32 LTv~EVAe~LgVs~srV~~LIr~G~L 57 (148)
T 2kfs_A 32 YDLPRVAELLGVPVSKVAQQLREGHL 57 (148)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHTTSC
T ss_pred EcHHHHHHHhCCCHHHHHHHHHCCCc
Confidence 68899999999999999999986544
No 135
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=71.91 E-value=2.5 Score=27.99 Aligned_cols=25 Identities=12% Similarity=0.161 Sum_probs=22.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.|||+.+++.+..+.|
T Consensus 36 ~~t~~ela~~l~is~~tv~~~l~~L 60 (109)
T 2d1h_A 36 PITSEELADIFKLSKTTVENSLKKL 60 (109)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5789999999999999999988877
No 136
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=71.82 E-value=2.9 Score=29.52 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=18.8
Q ss_pred CcHHHHHHHcCCChhHHHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
....++|+.|||+.++|.++.+.
T Consensus 26 ~~~~~~A~~~gvs~stl~~~~~~ 48 (131)
T 1hlv_A 26 LRKGEIARRFNIPPSTLSTILKN 48 (131)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CcHHHHHHHhCCCHHHHHHHHhc
Confidence 33459999999999999888765
No 137
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=71.56 E-value=3.1 Score=34.53 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=27.5
Q ss_pred cHHHHHHHcCCChhHHHHHHHHcCCCCCC
Q 036926 10 PITKAAKELNVGLTLLKKRCRELNIRRWP 38 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR~lGI~RWP 38 (168)
++.++|+..||++.++.+..|.+|+++-+
T Consensus 80 T~~eVAe~aGv~~e~~rr~wRalGfp~~~ 108 (222)
T 2ev1_A 80 SAREISENYGVDLELLQRVQRAVGLARVD 108 (222)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHCCCCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHhCCCCCC
Confidence 89999999999999999999999998875
No 138
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=71.56 E-value=3.3 Score=30.10 Aligned_cols=28 Identities=18% Similarity=0.166 Sum_probs=23.0
Q ss_pred hhccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
..-.+|..+.|+.||+|.+++.++.++|
T Consensus 20 ~~~~~s~~ela~~lg~s~~tv~~~l~~L 47 (151)
T 2dbb_A 20 ENSRLTYRELADILNTTRQRIARRIDKL 47 (151)
T ss_dssp HCTTCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3345899999999999999988877753
No 139
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=71.53 E-value=2.9 Score=29.27 Aligned_cols=28 Identities=18% Similarity=-0.001 Sum_probs=23.8
Q ss_pred hhh--hccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQ--YFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~--yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++. ..++.+.+.|+.+||+.+++.++-+
T Consensus 42 ~R~~~~~glsq~elA~~~gis~~~is~~E~ 71 (107)
T 2jvl_A 42 GRQKFEPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp HHTTSSSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 445 6789999999999999999988754
No 140
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=70.46 E-value=3.4 Score=27.36 Aligned_cols=24 Identities=13% Similarity=-0.198 Sum_probs=20.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
.+...|.|+.||||.+++.+....
T Consensus 14 ~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 14 GGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478999999999999988876654
No 141
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=69.59 E-value=3.2 Score=31.10 Aligned_cols=30 Identities=10% Similarity=-0.118 Sum_probs=26.0
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHHH
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
.+++-.++.+.+.|+.+|||.++|.++.+-
T Consensus 17 ~~r~~~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 17 DRREQVKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 356677999999999999999999998764
No 142
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=69.58 E-value=7.5 Score=30.72 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.7
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 9 MPITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
++|.|+|+.+|||..+|+..-+. |+
T Consensus 6 ~~i~e~a~~~gvs~~tlr~y~~~-gl 30 (278)
T 1r8e_A 6 YSIGEVSKLANVSIKALRYYDKI-DL 30 (278)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHT-TS
T ss_pred EeHHHHHHHHCcCHHHHHHHHHC-CC
Confidence 68999999999999999877655 75
No 143
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=68.89 E-value=4.3 Score=32.73 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=27.0
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
.-+....+.|.+||||.+++.|+.+++|+.
T Consensus 84 ~~~~t~~~ia~~l~vs~~tV~r~L~~~g~~ 113 (345)
T 3hot_A 84 DDAQTQKQLAEQLEVSQQAVSNRLREMGKI 113 (345)
T ss_dssp CSCCCHHHHHHHTTSCHHHHHHHHHHTTCE
T ss_pred CccchHHHHHHHHCCCHHHHHHHHHHhCCe
Confidence 346788999999999999999999999984
No 144
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=68.83 E-value=3 Score=27.21 Aligned_cols=26 Identities=15% Similarity=0.228 Sum_probs=24.1
Q ss_pred CcHHHHHHHc--CCChhHHHHHHHHcCC
Q 036926 9 MPITKAAKEL--NVGLTLLKKRCRELNI 34 (168)
Q Consensus 9 lPi~eAAr~L--gVs~T~LKr~CR~lGI 34 (168)
+|+.|.|+.+ .+|.+||.|.+|+-.|
T Consensus 3 ltl~EwA~~~~~~~s~~Tl~r~ar~G~I 30 (52)
T 2og0_A 3 LTLQEWNARQRRPRSLETVRRWVRESRI 30 (52)
T ss_dssp EEHHHHHHTSSSCCCHHHHHHHHHTTCE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCC
Confidence 6899999999 7899999999999887
No 145
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=68.78 E-value=2.9 Score=32.38 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=22.8
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
=-||..+.|+.||||.|++....++|
T Consensus 38 ~~L~E~~La~~lgVSRtpVREAl~~L 63 (222)
T 3ihu_A 38 QRLVETDLVAHFGVGRNSVREALQRL 63 (222)
T ss_dssp CEECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHCCCHHHHHHHHHHH
Confidence 35889999999999999999888765
No 146
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=68.73 E-value=3.8 Score=29.86 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=22.0
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
=.+|..+.|+.||+|.+++.++.++|
T Consensus 21 ~~~s~~ela~~lg~s~~tv~~~l~~L 46 (152)
T 2cg4_A 21 ARTAYAELAKQFGVSPETIHVRVEKM 46 (152)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35899999999999999988877654
No 147
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=68.71 E-value=4.5 Score=27.29 Aligned_cols=28 Identities=4% Similarity=-0.124 Sum_probs=23.7
Q ss_pred hhhhccCcHHHHHHHcCCChhH----HHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTL----LKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~----LKr~CR 30 (168)
++.--++.+.+.|+.+||+.++ +.++-+
T Consensus 9 ~R~~~glsq~~lA~~~gis~~~~~~~is~~E~ 40 (98)
T 3lfp_A 9 ARLRAGISQEKLGVLAGIDEASASARMNQYEK 40 (98)
T ss_dssp HHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCCCcchhhhHHHHHHC
Confidence 4566789999999999999999 777754
No 148
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=68.64 E-value=1 Score=33.50 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=0.0
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
.++..-++.+.+.|+.||||.+++.++ +.|..
T Consensus 8 ~~R~~~gltq~elA~~lgis~~~vs~~--e~G~~ 39 (158)
T 2p5t_A 8 SLRKTHDLTQLEFARIVGISRNSLSRY--ENGTS 39 (158)
T ss_dssp ----------------------------------
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHH--HCCCC
Confidence 456677899999999999999999998 55653
No 149
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=67.39 E-value=2.3 Score=33.68 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHcCC
Q 036926 11 ITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 11 i~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
+.+||+.||++.++|.+..++++|
T Consensus 267 ~~~~a~~lgi~~~tl~~~l~~~~i 290 (324)
T 1hqc_A 267 LATLATALSEDPGTLEEVHEPYLI 290 (324)
T ss_dssp HHHHHHHTTSCHHHHHHHTHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHhHHHH
Confidence 899999999999999998887665
No 150
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=67.15 E-value=3.6 Score=29.22 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=20.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+++..|.|++|||+.+++.++-..|
T Consensus 30 g~sa~eLAk~LgiSk~aVr~~L~~L 54 (82)
T 1oyi_A 30 GATAAQLTRQLNMEKREVNKALYDL 54 (82)
T ss_dssp TEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4788999999999998887766544
No 151
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=67.05 E-value=4.3 Score=29.47 Aligned_cols=28 Identities=11% Similarity=0.284 Sum_probs=23.9
Q ss_pred hhccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
..=.+|..|.|+.||+|.+++.++.++|
T Consensus 16 ~~~~~s~~ela~~lg~s~~tv~~~l~~L 43 (144)
T 2cfx_A 16 KDSRLSMRELGRKIKLSPPSVTERVRQL 43 (144)
T ss_dssp HCSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3345899999999999999999888876
No 152
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=66.79 E-value=28 Score=23.92 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=19.4
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 50 ~~~~~ela~~l~~s~~tvs~~l~~L 74 (146)
T 2gxg_A 50 PKTMAYLANRYFVTQSAITASVDKL 74 (146)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCchhHHHHHHHH
Confidence 5678999999999988776666544
No 153
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=66.08 E-value=32 Score=24.20 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=21.9
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-.+++.++|++.|||.++| |+...+.+.++..+
T Consensus 21 ~~~~ti~~IA~~agvs~~t~-------------Y~~F~sK~~L~~~~ 54 (189)
T 3geu_A 21 YDGTTLDDIAKSVNIKKASL-------------YYHFDSKKSIYEQS 54 (189)
T ss_dssp HHHCCHHHHHHHTTCCHHHH-------------TTTCSSHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHH-------------HHHhCCHHHHHHHH
Confidence 44566777777777777766 56666666665554
No 154
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=65.44 E-value=4.3 Score=28.80 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=19.7
Q ss_pred cHHHHHHHcCCChhHHHHHHHHc
Q 036926 10 PITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+..+.|+.||||.+++.+..++|
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L 57 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSL 57 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 48899999999999998887655
No 155
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=65.20 E-value=4.4 Score=28.79 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.1
Q ss_pred cHHHHHHHcCCChhHHHHHHHHc
Q 036926 10 PITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+..+.|+.||||.+++.+..++|
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L 67 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKL 67 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 78899999999999998887764
No 156
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=65.18 E-value=4.4 Score=30.34 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=25.1
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
++.--++.+.++|+.+|||.+++.++-+-
T Consensus 19 ~r~~~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 19 LRKSRGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp HHHHTTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45667899999999999999999998763
No 157
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=65.16 E-value=4.4 Score=27.91 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.++..+.|+.||||.+++.+..+.|
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L 57 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLL 57 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3789999999999999998887754
No 158
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=64.79 E-value=5.2 Score=27.04 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=20.6
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+...+.|+.|||+.+++.+..+.|
T Consensus 43 ~~~~~eLa~~l~is~~tv~~~L~~L 67 (96)
T 1y0u_A 43 GRSEEEIMQTLSLSKKQLDYHLKVL 67 (96)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4678999999999999988876643
No 159
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=64.79 E-value=4.8 Score=29.34 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=24.8
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
+++.--++.+.+.|+.+|||.+++.++=+
T Consensus 10 ~~R~~~gltq~elA~~~gis~~~is~iE~ 38 (130)
T 3fym_A 10 GRRERLGMTLTELEQRTGIKREMLVHIEN 38 (130)
T ss_dssp HHHHHTTCCHHHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 35667799999999999999999999843
No 160
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=64.20 E-value=4.7 Score=27.81 Aligned_cols=24 Identities=4% Similarity=-0.031 Sum_probs=18.8
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
+-....|+|+.||||.+++.+--.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 556699999999999887665544
No 161
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=64.10 E-value=4.5 Score=31.26 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.8
Q ss_pred cCc-HHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMP-ITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lP-i~eAAr~LgVs~T~LKr~CR~l 32 (168)
-|| ..+.|+.||||.|++...-+.|
T Consensus 30 ~LPsE~eLa~~~gVSR~tVReAL~~L 55 (239)
T 1hw1_A 30 ILPAERELSELIGVTRTTLREVLQRL 55 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 576 8999999999999999887765
No 162
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=64.08 E-value=5.1 Score=26.76 Aligned_cols=22 Identities=27% Similarity=0.244 Sum_probs=19.8
Q ss_pred cHHHHHHHcCCChhHHHHHHHH
Q 036926 10 PITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR~ 31 (168)
.+.+||++|||+.+.+-+..|.
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir~ 36 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIHA 36 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHHh
Confidence 7889999999999999998873
No 163
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=64.01 E-value=4.6 Score=26.61 Aligned_cols=25 Identities=0% Similarity=-0.039 Sum_probs=20.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 38 ~~s~~ela~~l~is~~tvs~~l~~L 62 (99)
T 3cuo_A 38 GTSAGELTRITGLSASATSQHLARM 62 (99)
T ss_dssp SEEHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4678999999999998888877654
No 164
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=63.81 E-value=5.4 Score=28.97 Aligned_cols=26 Identities=15% Similarity=0.262 Sum_probs=22.1
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
=.++..+.|+.||+|.+++.++.++|
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L 45 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRL 45 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35899999999999999988877754
No 165
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=63.20 E-value=6.4 Score=25.85 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.2
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
=.+++.+.|+.|||+.+++.+..++|
T Consensus 33 ~~~s~~ela~~l~is~~tv~~~l~~L 58 (109)
T 1sfx_A 33 GGMRVSEIARELDLSARFVRDRLKVL 58 (109)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 35788999999999998888877754
No 166
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=62.76 E-value=5.7 Score=28.16 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=25.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc---C-CCCCCch
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL---N-IRRWPHR 40 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l---G-I~RWP~R 40 (168)
.+++.++|+.|||+.+++.+..++| | |.|=|++
T Consensus 22 ~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~~ 58 (142)
T 1on2_A 22 YARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYR 58 (142)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeCc
Confidence 5789999999999999887777644 4 4455544
No 167
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=62.74 E-value=4.6 Score=28.89 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.+++.++|+.+|||.+|+-|...
T Consensus 20 ~~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 20 KKTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 37999999999999999988764
No 168
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=62.40 E-value=4.8 Score=28.93 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=20.9
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+++.|.|+.||++.+++.|....|
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L 66 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKL 66 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 789999999999999988887653
No 169
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=62.15 E-value=4.9 Score=29.26 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=19.9
Q ss_pred cHHHHHHHcCCChhHHHHHHHHc
Q 036926 10 PITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+..+.|+.||||.+++.+..++|
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 68899999999999998877654
No 170
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=61.51 E-value=5.6 Score=26.15 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.++..++|+.|||+.+++-+..++|
T Consensus 30 ~~~~~ela~~l~is~~tvs~~l~~L 54 (100)
T 1ub9_A 30 KAPFSQIQKVLDLTPGNLDSHIRVL 54 (100)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4788999999999999988877755
No 171
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=60.75 E-value=4.4 Score=27.88 Aligned_cols=26 Identities=8% Similarity=0.183 Sum_probs=22.1
Q ss_pred cC-cHHHHHHHcCCChhHHHHHHHHcC
Q 036926 8 YM-PITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 8 ~l-Pi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.+ +..+.|+.||||.+++.+..+.|-
T Consensus 34 ~lps~~eLa~~~~vSr~tvr~al~~L~ 60 (102)
T 1v4r_A 34 TLPSVADIRAQFGVAAKTVSRALAVLK 60 (102)
T ss_dssp BCCCHHHHHHHSSSCTTHHHHHTTTTT
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35 589999999999999999887664
No 172
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=60.70 E-value=6.4 Score=28.87 Aligned_cols=26 Identities=8% Similarity=-0.052 Sum_probs=21.8
Q ss_pred cC-cHHHHHHHcCCChhHHHHHHHHcC
Q 036926 8 YM-PITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 8 ~l-Pi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
-| +..+.|+.||||.|++.+..+.|-
T Consensus 27 ~LPse~~La~~~gvSr~tVr~Al~~L~ 53 (129)
T 2ek5_A 27 RVPSTNELAAFHRINPATARNGLTLLV 53 (129)
T ss_dssp CBCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35 488999999999999998877664
No 173
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=60.55 E-value=5.8 Score=31.42 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=20.4
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++++|++.|||.+|+-|.-...
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~~ 26 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNGN 26 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTTC
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Confidence 578999999999999998877643
No 174
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=60.21 E-value=6.6 Score=27.64 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=20.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 31 ~~s~~ela~~l~is~~tv~~~l~~L 55 (139)
T 2x4h_A 31 GAKINRIAKDLKIAPSSVFEEVSHL 55 (139)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCChHHHHHHHHHH
Confidence 4689999999999998887776654
No 175
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=59.48 E-value=8.7 Score=27.49 Aligned_cols=25 Identities=4% Similarity=-0.028 Sum_probs=22.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.|||+..||+.+.|.+..+.+
T Consensus 49 ~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 49 LITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp SSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 5789999999999999999988876
No 176
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=59.44 E-value=6.5 Score=31.36 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=19.6
Q ss_pred cHHHHHHHcCCChhHHHHHHHHc
Q 036926 10 PITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+++++|++.|||.+|+-|.-...
T Consensus 2 ti~diA~~agVS~~TVSrvLn~~ 24 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINKT 24 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHCCCHHHHHHHHcCc
Confidence 68999999999999998877643
No 177
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=58.96 E-value=7.2 Score=27.02 Aligned_cols=26 Identities=15% Similarity=0.228 Sum_probs=24.3
Q ss_pred CcHHHHHHHc--CCChhHHHHHHHHcCC
Q 036926 9 MPITKAAKEL--NVGLTLLKKRCRELNI 34 (168)
Q Consensus 9 lPi~eAAr~L--gVs~T~LKr~CR~lGI 34 (168)
+++.|.|+.+ .+|..||.|.+|+-.|
T Consensus 3 lTl~EwA~~~~~~~s~~Tl~r~ar~G~I 30 (72)
T 1pm6_A 3 LTLQEWNARQRRPRSLETVRRWVRESRI 30 (72)
T ss_dssp EEHHHHHHHSSSCCCHHHHHHHHHHTCE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCC
Confidence 6899999999 7899999999999888
No 178
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=58.93 E-value=5.7 Score=30.58 Aligned_cols=25 Identities=12% Similarity=0.304 Sum_probs=21.9
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
-++..+.|+.||||.|++....++|
T Consensus 35 ~L~e~~La~~lgVSRtpVREAL~~L 59 (218)
T 3sxy_A 35 KLNVRELSEKLGISFTPVRDALLQL 59 (218)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHH
T ss_pred EeCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4688999999999999998888765
No 179
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=58.68 E-value=6.4 Score=30.73 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=20.9
Q ss_pred cCc-HHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMP-ITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lP-i~eAAr~LgVs~T~LKr~CR~l 32 (168)
-|| ..+.|+.||||.|++...-+.|
T Consensus 27 ~LpsE~~La~~lgVSRtpVREAL~~L 52 (239)
T 2di3_A 27 HLPSERALSETLGVSRSSLREALRVL 52 (239)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 576 6799999999999988777654
No 180
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=58.50 E-value=7.6 Score=26.90 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=21.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+.+.++|+.|||+.+++-+..++|
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~L 69 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVL 69 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4788999999999999887777655
No 181
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=58.38 E-value=8.7 Score=28.93 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=23.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
.++|.|+|+.+|||+.+|...-+. |+
T Consensus 4 ~~tI~evA~~~Gvs~~tLR~ye~~-GL 29 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRALRYYDKI-NL 29 (146)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHT-TS
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHC-CC
Confidence 478999999999999999988777 64
No 182
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=58.37 E-value=6.5 Score=31.19 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=25.9
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc---C-CCCCCch
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL---N-IRRWPHR 40 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l---G-I~RWP~R 40 (168)
.++..+.|+.||||.|++.+-.+.| | |.+-|++
T Consensus 49 ~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~~ 85 (237)
T 3c7j_A 49 ALRQQELATLFGVSRMPVREALRQLEAQSLLRVETHK 85 (237)
T ss_dssp BCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred eeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 5789999999999999998887764 3 4445555
No 183
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=57.45 E-value=5.8 Score=29.03 Aligned_cols=26 Identities=8% Similarity=0.022 Sum_probs=22.9
Q ss_pred ccCcHHHHHHHc--CCChhHHHHHHHHc
Q 036926 7 FYMPITKAAKEL--NVGLTLLKKRCREL 32 (168)
Q Consensus 7 F~lPi~eAAr~L--gVs~T~LKr~CR~l 32 (168)
=-++..+.|+.+ |||.+++.++|++|
T Consensus 26 g~~s~~eLA~~l~~giS~~aVs~rL~~L 53 (111)
T 3b73_A 26 GNGSPKELEDRDEIRISKSSVSRRLKKL 53 (111)
T ss_dssp SCBCHHHHHTSTTCCSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 367899999999 99999999999864
No 184
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=57.26 E-value=8.3 Score=27.41 Aligned_cols=25 Identities=16% Similarity=0.141 Sum_probs=21.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.++..+.|+.+||+.+++.++.+.|
T Consensus 26 ~~s~~ela~~~~i~~~~v~~il~~L 50 (129)
T 2y75_A 26 PTSLKSIAQTNNLSEHYLEQLVSPL 50 (129)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3789999999999999999988755
No 185
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=56.09 E-value=8.6 Score=26.90 Aligned_cols=26 Identities=12% Similarity=0.231 Sum_probs=21.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.+++.++|+.|||+.+++-+..++|-
T Consensus 54 ~~t~~ela~~l~~~~~tvs~~l~~Le 79 (148)
T 3nrv_A 54 DCSVQKISDILGLDKAAVSRTVKKLE 79 (148)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57889999999999888877776553
No 186
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=55.52 E-value=9.9 Score=26.05 Aligned_cols=26 Identities=12% Similarity=0.143 Sum_probs=20.9
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.+++.++|+.|||+.+++-+..++|-
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~ 77 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLD 77 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57889999999999888777776553
No 187
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=55.21 E-value=6.8 Score=31.29 Aligned_cols=21 Identities=5% Similarity=0.112 Sum_probs=17.8
Q ss_pred CcHHHHHHHcCCChhHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRC 29 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~C 29 (168)
..++++|++.|||.+|+-|.-
T Consensus 11 ~ti~diA~~agVS~~TVSr~L 31 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVL 31 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHH
Confidence 579999999999999887653
No 188
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=55.10 E-value=11 Score=30.58 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.4
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 9 MPITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
|.|.|+|+.+||++.+|+...++ |+
T Consensus 1 ~~IgevA~~~Gvs~~TLRyYE~~-GL 25 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYYLRE-GL 25 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHH-TS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHC-CC
Confidence 57999999999999999998887 64
No 189
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=55.07 E-value=7.6 Score=29.30 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=19.8
Q ss_pred CcHHHHHHHcCCChhHHHHHHH----HcCC
Q 036926 9 MPITKAAKELNVGLTLLKKRCR----ELNI 34 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR----~lGI 34 (168)
-.+..||++||||.+++-+.-+ ++|+
T Consensus 16 gs~s~AA~~L~isq~avS~~i~~LE~~lg~ 45 (294)
T 1ixc_A 16 GNMAAAAKRLHVSQPPITRQMQALEADLGV 45 (294)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHhCCCcchHHHHHHHHHHHHCC
Confidence 4678999999999988755444 5664
No 190
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=54.75 E-value=4.7 Score=28.24 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=20.9
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNVQE 54 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l~~ 54 (168)
|+..++++.+|++.||.+ ==|+-..+.+.++..+-+
T Consensus 29 G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 65 (177)
T 3kkc_A 29 DYSKITVQDVIGLANVGRSTFYSHYESKEVLLKELCE 65 (177)
T ss_dssp CTTTCCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHHH
T ss_pred ChhHhhHHHHHHHhCCcHhhHHHHcCCHHHHHHHHHH
Confidence 555555555555555532 126777777777766533
No 191
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=54.61 E-value=6.3 Score=31.77 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=18.1
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.+++++|++.|||.+|+-|.-+
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn 31 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYN 31 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHC
Confidence 4689999999999998866543
No 192
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=54.19 E-value=18 Score=26.07 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=28.9
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSL 45 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL 45 (168)
++.+.+.|+..||+.++|-.+-+---.|.=|+|.-+-+
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG~~~PsL~~kIAk~f 69 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNSTYYANVSAAKCQEF 69 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTCSSCCCCCSHHHHHH
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcCCCCCCchHHHHHHH
Confidence 89999999999999999998876544555555444433
No 193
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=54.18 E-value=11 Score=25.57 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=21.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.++..+.|+.|||+.+++.+..++|
T Consensus 34 ~~~~~ela~~l~is~~tv~~~l~~L 58 (114)
T 2oqg_A 34 DQSASSLATRLPVSRQAIAKHLNAL 58 (114)
T ss_dssp CBCHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4788999999999999988877654
No 194
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=54.05 E-value=8.1 Score=29.36 Aligned_cols=27 Identities=15% Similarity=0.277 Sum_probs=20.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHH----HHcCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRC----RELNI 34 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~C----R~lGI 34 (168)
+-.+..||++||||.++|-+.- .++|+
T Consensus 17 ~gs~t~AA~~L~isq~avS~~i~~LE~~lg~ 47 (306)
T 3hhg_A 17 SGSFSRAAEQLAMANSAVSRIVKRLEEKLGV 47 (306)
T ss_dssp SSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 4567899999999998765544 35564
No 195
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=53.87 E-value=9.8 Score=27.41 Aligned_cols=33 Identities=24% Similarity=0.231 Sum_probs=24.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc---C-CCCCCch
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL---N-IRRWPHR 40 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l---G-I~RWP~R 40 (168)
.+.+.++|+.|||+.+++.+..++| | |.|-|.+
T Consensus 54 ~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~~ 90 (155)
T 2h09_A 54 EARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWR 90 (155)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETTT
T ss_pred CcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 5788999999999998888777654 4 3444543
No 196
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=53.82 E-value=11 Score=30.38 Aligned_cols=28 Identities=21% Similarity=0.055 Sum_probs=22.6
Q ss_pred ccCcHHHHHHHcCCChhHH----HHHHHHcCC
Q 036926 7 FYMPITKAAKELNVGLTLL----KKRCRELNI 34 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~L----Kr~CR~lGI 34 (168)
-+++.+|+|+.||||..++ +++.+++|+
T Consensus 211 ~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 211 RGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3788999999999998665 556677777
No 197
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=53.48 E-value=7.7 Score=29.79 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=23.8
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++...++.+.+.|+.+||+.+++.+..+
T Consensus 25 ~r~~~g~t~~~lA~~~gis~~~i~~~~~ 52 (236)
T 3bdn_A 25 KKNELGLSQESVADKMGMGQSGVGALFN 52 (236)
T ss_dssp HTTTTTCCSHHHHHHHTSCHHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4455688999999999999999998765
No 198
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=52.85 E-value=11 Score=25.97 Aligned_cols=25 Identities=4% Similarity=-0.015 Sum_probs=19.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~L 74 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRM 74 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHH
Confidence 4788999999999988766665544
No 199
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=52.84 E-value=8.8 Score=29.99 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=21.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.+.+.+||+.|||+.+++-+..++|-
T Consensus 27 ~~s~s~aA~~L~isq~avSr~I~~LE 52 (230)
T 3cta_A 27 YLTSSKLADMLGISQQSASRIIIDLE 52 (230)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 36799999999999999888877653
No 200
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=52.59 E-value=13 Score=27.66 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.3
Q ss_pred cHHHHHHHcCCChhHHHHHHHH
Q 036926 10 PITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR~ 31 (168)
.+.+.|+.+|||.+++.+.-+.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 8999999999999999998773
No 201
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=52.58 E-value=11 Score=26.13 Aligned_cols=26 Identities=12% Similarity=0.009 Sum_probs=21.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.+++.++|+.|||+.+++-+..++|-
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~L~ 72 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKRLE 72 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 57889999999999988877776553
No 202
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=52.53 E-value=10 Score=26.31 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=22.7
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc---C-CCCCC
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL---N-IRRWP 38 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l---G-I~RWP 38 (168)
+++.+.|+.|||+.+++-+...+| | |.|-|
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 789999999999998888777654 5 45555
No 203
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=52.08 E-value=9 Score=29.34 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=20.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHH----HcCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCR----ELNI 34 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR----~lGI 34 (168)
+-.+..||++||||.++|-+.-+ ++|+
T Consensus 24 ~gs~s~AA~~L~isq~avS~~I~~LE~~lg~ 54 (310)
T 2esn_A 24 HRNVGTAASELAISASAFSHALGRLRQGLDD 54 (310)
T ss_dssp HSSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHhhCC
Confidence 34678999999999987755544 5675
No 204
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=51.98 E-value=11 Score=25.84 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=20.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~L 69 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKLL 69 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5788999999999998777666644
No 205
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=51.89 E-value=9.8 Score=29.24 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=20.4
Q ss_pred cCcHHHHHHHcCCChhHHHHHHH----HcCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCR----ELNI 34 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR----~lGI 34 (168)
+-.+..||++||||.+++-+.-+ ++|+
T Consensus 16 ~gs~t~AA~~L~isq~avS~~i~~LE~~lg~ 46 (305)
T 3fxq_A 16 VGSLRAAAQLLHLSQPALSAAIQQLEDELKA 46 (305)
T ss_dssp HSCHHHHHHHTTCCHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 34678999999999987765554 5675
No 206
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=51.79 E-value=9.4 Score=28.46 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=16.6
Q ss_pred cCcHHHHHHHcCCChhHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKR 28 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~ 28 (168)
+-.+..||++||||.++|-+.
T Consensus 15 ~~s~t~AA~~L~isq~avS~~ 35 (291)
T 3szp_A 15 NGSYTSTSKKTMIPVATITRR 35 (291)
T ss_dssp HSSHHHHHHHHTCCHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHH
Confidence 346789999999999877544
No 207
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=51.72 E-value=59 Score=23.05 Aligned_cols=36 Identities=3% Similarity=-0.070 Sum_probs=27.0
Q ss_pred HcCCChhHHHHHHHHcCC-CCCCchhhhcHHHHHHHH
Q 036926 17 ELNVGLTLLKKRCRELNI-RRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 17 ~LgVs~T~LKr~CR~lGI-~RWP~RKlkSL~~li~~l 52 (168)
+-|+.-+++..+|++.|| +.=-|+.+.+-+.++..+
T Consensus 28 ~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~ 64 (217)
T 3nrg_A 28 QNDYDSVSINRITERAGIAKGSFYQYFADKKDCYLYL 64 (217)
T ss_dssp HSCGGGCCHHHHHHHHTCCTTGGGGTCSSHHHHHHHH
T ss_pred hcCcccCCHHHHHHHhCCcHHHHHHHcCCHHHHHHHH
Confidence 457777888888888887 445688888888887665
No 208
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=51.67 E-value=11 Score=27.74 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=22.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.++..|||+..|||.+++.+.+|.+
T Consensus 50 ~lS~~EAa~ry~Is~~ei~~W~r~y 74 (101)
T 2oa4_A 50 LITLAEAKQTYGLSDEEFNSWVSAL 74 (101)
T ss_dssp TCCHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 6889999999999999999888765
No 209
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=51.66 E-value=12 Score=25.89 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=20.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 52 ~~t~~~la~~l~~s~~~vs~~l~~L 76 (146)
T 2fbh_A 52 SPTQRELAQSVGVEGPTLARLLDGL 76 (146)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCChhhHHHHHHHH
Confidence 5688999999999988777776644
No 210
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=51.61 E-value=13 Score=24.99 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=13.2
Q ss_pred CcHHHHHHHcCCChh
Q 036926 9 MPITKAAKELNVGLT 23 (168)
Q Consensus 9 lPi~eAAr~LgVs~T 23 (168)
|+..||..-|||+.+
T Consensus 1 mt~~EA~~ILgv~~~ 15 (65)
T 2guz_B 1 MTLDESCKILNIEES 15 (65)
T ss_dssp CCHHHHHHHTTCCGG
T ss_pred CCHHHHHHHhCCCCC
Confidence 578899999999987
No 211
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=51.60 E-value=9.5 Score=26.27 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=20.6
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.||++.+++-+...+|
T Consensus 41 ~~t~~ela~~l~~~~stvs~~l~~L 65 (152)
T 1ku9_A 41 PLTISDIMEELKISKGNVSMSLKKL 65 (152)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4788999999999998877777654
No 212
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=51.58 E-value=12 Score=25.96 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=20.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 50 ~~~~~~la~~l~i~~~~vs~~l~~L 74 (147)
T 2hr3_A 50 DVTPSELAAAERMRSSNLAALLREL 74 (147)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCChhhHHHHHHHH
Confidence 5789999999999998877766654
No 213
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=51.40 E-value=13 Score=25.53 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=20.2
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
=.+++.+.|+.|||+.+++-+..++|
T Consensus 42 ~~~~~~ela~~l~~s~~tvs~~l~~L 67 (138)
T 3bpv_A 42 PGIKQDELATFFHVDKGTIARTLRRL 67 (138)
T ss_dssp TTCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 35788999999999988777666544
No 214
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=51.40 E-value=5.7 Score=27.77 Aligned_cols=34 Identities=12% Similarity=0.071 Sum_probs=19.6
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l 52 (168)
|+..++++.+|++.||.+ =-|+...|.+.++..+
T Consensus 25 G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 59 (188)
T 3qkx_A 25 GLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQF 59 (188)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHH
Confidence 555555555555555532 2366677777776554
No 215
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=51.04 E-value=50 Score=23.43 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=29.0
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCC-CCCCchhhhcHHHHHHHH
Q 036926 11 ITKAAKEL----NVGLTLLKKRCRELNI-RRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 11 i~eAAr~L----gVs~T~LKr~CR~lGI-~RWP~RKlkSL~~li~~l 52 (168)
|-+||.+| |..-|++..+|++.|| +.=-|+-+.|-+.++..+
T Consensus 12 Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~a~ 58 (178)
T 4hku_A 12 ILNMAEKIIYEKGMEKTTLYDIASNLNVTHAALYKHYRNKEDLFQKL 58 (178)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccccHHHHHHHhCcCHhHHHHHCCCHHHHHHHH
Confidence 34555554 7777777777777777 445688888888776654
No 216
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=51.03 E-value=10 Score=25.42 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=20.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+...|.|+.|||+.+++.+.-+.|
T Consensus 36 ~~~~~ela~~l~is~~tvs~~L~~L 60 (98)
T 3jth_A 36 ELSVGELCAKLQLSQSALSQHLAWL 60 (98)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4678999999999999887776643
No 217
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=50.88 E-value=9.1 Score=30.24 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=25.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcC----CCCCCch
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELN----IRRWPHR 40 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lG----I~RWP~R 40 (168)
-|+..+.|+.||||.|++...-++|- |..-|+|
T Consensus 51 ~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 87 (239)
T 2hs5_A 51 RLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNR 87 (239)
T ss_dssp EECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred EeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 46899999999999999888777653 3444554
No 218
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=50.64 E-value=11 Score=24.45 Aligned_cols=21 Identities=14% Similarity=0.197 Sum_probs=19.3
Q ss_pred cHHHHHHHcCCChhHHHHHHH
Q 036926 10 PITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR 30 (168)
.+.+.|+.+||+.+++.++-+
T Consensus 29 sq~~lA~~~gis~~~is~~E~ 49 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIET 49 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHc
Confidence 789999999999999999865
No 219
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=50.45 E-value=12 Score=30.16 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=23.9
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
-|+++..++|+.||+|.+++.+.-|=+++
T Consensus 132 ~~g~t~~~iA~~lG~s~~~V~~~l~l~~l 160 (230)
T 1vz0_A 132 EMGLTQEEVARRVGKARSTVANALRLLQL 160 (230)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHGGGS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHcC
Confidence 36889999999999999999887655543
No 220
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=50.09 E-value=6.2 Score=27.64 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=17.6
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l 52 (168)
|+..+++..+|++.||.+ =-|+.+.+.+.++..+
T Consensus 26 G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 60 (195)
T 3ppb_A 26 GFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQL 60 (195)
T ss_dssp CSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHH
Confidence 555555555555555422 1255566666665554
No 221
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=49.89 E-value=11 Score=29.58 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=28.9
Q ss_pred hhhccCcHHHHHHHcCCChhHHHHHHHHcCCCCC
Q 036926 4 SQYFYMPITKAAKELNVGLTLLKKRCRELNIRRW 37 (168)
Q Consensus 4 ~~yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RW 37 (168)
.+.=.+...|.|+.||||..|+.|=-.+|+|+-+
T Consensus 22 ~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~l 55 (190)
T 4a0z_A 22 DSNPFITDHELSDLFQVSIQTIRLDRTYLNIPEL 55 (190)
T ss_dssp HHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCCH
T ss_pred HHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcch
Confidence 3344578899999999999999999999999654
No 222
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=49.10 E-value=11 Score=28.65 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.7
Q ss_pred CcHHHHHHHcCCChhHHHHHHH---HcCC
Q 036926 9 MPITKAAKELNVGLTLLKKRCR---ELNI 34 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR---~lGI 34 (168)
++..+.|+.||||.+++.|.-. +.|+
T Consensus 37 ~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~ 65 (187)
T 1j5y_A 37 VSGAQLAEELSVSRQVIVQDIAYLRSLGY 65 (187)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 8999999999999988887664 4565
No 223
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=49.07 E-value=11 Score=31.35 Aligned_cols=28 Identities=11% Similarity=0.118 Sum_probs=25.2
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
...+.++++.++|+.+|||.+.+-++-+
T Consensus 39 ~r~~~gltQ~evA~~tGISqS~ISq~e~ 66 (221)
T 2h8r_A 39 YMQQHNIPQREVVDVTGLNQSHLSQHLN 66 (221)
T ss_dssp HHHHHTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHhCCCHHHHHHHHh
Confidence 4567799999999999999999999986
No 224
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=48.97 E-value=8.9 Score=25.71 Aligned_cols=23 Identities=9% Similarity=-0.074 Sum_probs=17.9
Q ss_pred cCcHHHHHHHcCCChhH-HHHHHH
Q 036926 8 YMPITKAAKELNVGLTL-LKKRCR 30 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~-LKr~CR 30 (168)
.+++.+.|+.|||+.++ +-+..+
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~ 53 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKD 53 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHH
Confidence 57889999999999888 554444
No 225
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=48.89 E-value=12 Score=25.12 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=19.1
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+++.+.|+.|||+.+++-+...+|
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~L 54 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKF 54 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 678899999999988877766544
No 226
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=48.83 E-value=12 Score=27.37 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=28.3
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHH---HcCCCCCCchhhhcH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCR---ELNIRRWPHRKLMSL 45 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR---~lGI~RWP~RKlkSL 45 (168)
+.+|..+.|..||++..++-|..+ +-|+=+.-++++.=+
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 203 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEVR 203 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEe
Confidence 568999999999999987777665 457655555655433
No 227
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=48.79 E-value=13 Score=26.60 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=17.5
Q ss_pred hhccCcHHHHHHHcCCChhHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKR 28 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~ 28 (168)
.| +..+.++|++.|||..+|-+.
T Consensus 33 G~-~~s~~~Ia~~agvs~~t~Y~~ 55 (199)
T 2rek_A 33 GA-DASLEEIARRAGVGSATLHRH 55 (199)
T ss_dssp GG-GCCHHHHHHHHTCCHHHHHHH
T ss_pred CC-CCCHHHHHHHhCCchHHHHHH
Confidence 45 788888888888888887543
No 228
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=48.66 E-value=11 Score=26.00 Aligned_cols=25 Identities=20% Similarity=0.101 Sum_probs=20.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.+||+.+++-+..++|
T Consensus 47 ~~t~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3eco_A 47 GLTQNDIAKALQRTGPTVSNLLRNL 71 (139)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHH
Confidence 5678899999999988887777655
No 229
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=48.15 E-value=14 Score=26.25 Aligned_cols=25 Identities=4% Similarity=0.050 Sum_probs=20.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 63 ~~t~~ela~~l~is~~tvs~~l~~L 87 (162)
T 2fa5_A 63 GSSASEVSDRTAMDKVAVSRAVARL 87 (162)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5788899999999988877776655
No 230
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.11 E-value=19 Score=28.07 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=21.4
Q ss_pred HcCCChhHHHHHHHHcCCCCCCchhhhcH
Q 036926 17 ELNVGLTLLKKRCRELNIRRWPHRKLMSL 45 (168)
Q Consensus 17 ~LgVs~T~LKr~CR~lGI~RWP~RKlkSL 45 (168)
--|||.++=+.+|+++||. |..++..|
T Consensus 28 I~GIG~~~A~~I~~~~gid--~~~r~g~L 54 (148)
T 3j20_O 28 IKGIGINFATMVCRVAGLD--PFMKAGYL 54 (148)
T ss_dssp STTCCHHHHHHHHHHHTCC--SSSCTTBC
T ss_pred ccCcCHHHHHHHHHHhCCC--CCceeccC
Confidence 4599999999999999995 44555544
No 231
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=47.33 E-value=18 Score=30.63 Aligned_cols=52 Identities=19% Similarity=0.320 Sum_probs=30.6
Q ss_pred hhhhccCcHHHHHHHcCCCh---------hHHHHHHHHcCCCC--------CCchhhhcHHHHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGL---------TLLKKRCRELNIRR--------WPHRKLMSLQTLIKNVQE 54 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~---------T~LKr~CR~lGI~R--------WP~RKlkSL~~li~~l~~ 54 (168)
|..||.|+-.+|.+.|.|-. ..+-+.|+.+||.| =|-.++..++..|+.+..
T Consensus 226 Le~ffem~~~da~~al~iykrf~~Q~e~L~~Fy~~ck~l~l~~~~iP~L~~~p~d~l~~lq~~i~ev~~ 294 (310)
T 3zym_A 226 LEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDRGDISGSGSGHMDRVRNLQSEVEGVKN 294 (310)
T ss_dssp HHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------------CHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccchHHHHHHHHHHHHHH
Confidence 56799999999999997743 44667899999744 334445555555444443
No 232
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=47.31 E-value=14 Score=27.05 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=30.0
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHH---HcCCCCCCchhhhcHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCR---ELNIRRWPHRKLMSLQ 46 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR---~lGI~RWP~RKlkSL~ 46 (168)
+.+|..+.|..||++..++-|.-+ +-|+-+.-++++.=++
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d 210 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITILD 210 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESC
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEeC
Confidence 478999999999999877766654 5577777666665444
No 233
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=47.25 E-value=14 Score=25.34 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=19.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
.+.+.++|+.|||+.+++.+.-+.
T Consensus 39 ~~~~~ela~~l~is~stvs~~L~~ 62 (106)
T 1r1u_A 39 EASVGHISHQLNLSQSNVSHQLKL 62 (106)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 367899999999999888776554
No 234
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=46.89 E-value=14 Score=25.40 Aligned_cols=25 Identities=12% Similarity=-0.048 Sum_probs=19.4
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+...+|
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~L 74 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARL 74 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHH
Confidence 4678999999999988776666544
No 235
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=46.62 E-value=12 Score=25.83 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=19.4
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 43 ~~t~~~la~~l~~s~~~vs~~l~~L 67 (144)
T 1lj9_A 43 GIIQEKIAELIKVDRTTAARAIKRL 67 (144)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 4678899999999988777666544
No 236
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=46.39 E-value=22 Score=26.76 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=23.2
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNVQEL 55 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l~~~ 55 (168)
|+..+++..+|++.||.+ =-|+.+++.+.++..+-+.
T Consensus 23 G~~~~s~~~IA~~aGvs~~tlY~~F~sK~~Ll~av~~~ 60 (220)
T 1z0x_A 23 TLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEA 60 (220)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHcCCCHHHHHHhcCCHHHHHHHHHHH
Confidence 555566666666666532 2377788888887776443
No 237
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=46.32 E-value=19 Score=27.01 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=22.3
Q ss_pred cCcHHHHHHHcCCChhH----HHHHHHHcCCC
Q 036926 8 YMPITKAAKELNVGLTL----LKKRCRELNIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~----LKr~CR~lGI~ 35 (168)
+++.+++|+.||+|..| ++++.+++|+.
T Consensus 164 g~s~~eIa~~l~is~~TV~~hi~~l~~KL~~~ 195 (225)
T 3c3w_A 164 GLTNKQIADRMFLAEKTVKNYVSRLLAKLGME 195 (225)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCC
Confidence 57889999999999874 55677788873
No 238
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=46.29 E-value=13 Score=26.54 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=20.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 66 ~~t~~ela~~l~is~~tvs~~l~~L 90 (162)
T 3cjn_A 66 GLPIGTLGIFAVVEQSTLSRALDGL 90 (162)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHH
Confidence 4678999999999988877777655
No 239
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=46.23 E-value=16 Score=25.83 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=20.4
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~L 82 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSL 82 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5788999999999988877776655
No 240
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=45.92 E-value=15 Score=28.09 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=18.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
..++.|.|+.||++.+++.++-++|
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~L 48 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIAL 48 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHH
Confidence 4678888888888887776655544
No 241
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=45.78 E-value=17 Score=25.53 Aligned_cols=22 Identities=14% Similarity=-0.103 Sum_probs=14.3
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-.+.+.++|++.|||.++|-+
T Consensus 20 ~~~~ti~~Ia~~agvs~~t~Y~ 41 (194)
T 3bqz_B 20 YNATTTGEIVKLSESSKGNLYY 41 (194)
T ss_dssp TTTCCHHHHHHHTTCCHHHHHH
T ss_pred CccCCHHHHHHHhCCCchhHHH
Confidence 4456677777777777776643
No 242
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=45.75 E-value=4.3 Score=32.36 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
.+++++|+++|||.+|+-|.-+.
T Consensus 5 ~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 5 VTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46899999999999998877653
No 243
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=45.66 E-value=13 Score=26.13 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=20.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 55 ~~t~~eLa~~l~~~~~tvs~~l~~L 79 (154)
T 2qww_A 55 GISVADLTKRLIITGSSAAANVDGL 79 (154)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4678999999999988877777654
No 244
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=45.61 E-value=17 Score=25.62 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=19.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 57 ~~t~~ela~~l~i~~~tvs~~l~~L 81 (155)
T 3cdh_A 57 AMMITRLAKLSLMEQSRMTRIVDQM 81 (155)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4678899999999988777776654
No 245
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=45.32 E-value=16 Score=26.99 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=29.1
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHH---HcCCCCCC-chhhhcHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCR---ELNIRRWP-HRKLMSLQ 46 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR---~lGI~RWP-~RKlkSL~ 46 (168)
+.++..+.|..||++..++-|..+ +-|+-... ++++.=++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~~i~i~d 209 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGILERVNQRTLLLKD 209 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEESSSSEEEESC
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEcCCCEEEEcC
Confidence 468899999999999877766654 45766665 66665443
No 246
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=45.11 E-value=14 Score=25.76 Aligned_cols=26 Identities=8% Similarity=-0.106 Sum_probs=20.4
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.+++.+.|+.|||+.+++-+...+|-
T Consensus 51 ~~t~~eLa~~l~~~~~~vs~~l~~L~ 76 (143)
T 3oop_A 51 PISQKEIALWTKKDTPTVNRIVDVLL 76 (143)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 56788999999999888877766553
No 247
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=44.96 E-value=15 Score=26.24 Aligned_cols=22 Identities=9% Similarity=0.027 Sum_probs=13.9
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-.+.+.++|++.|||..+|-+
T Consensus 32 ~~~~ti~~IA~~agvs~~t~Y~ 53 (212)
T 3knw_A 32 FVGVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp STTCCHHHHHHHHTCCHHHHHH
T ss_pred CccCCHHHHHHHhCCChHHHHH
Confidence 3456666777777777666643
No 248
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=44.85 E-value=15 Score=25.80 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHHHHcCCCh-hHHHHHHHHcCCCCCCchhhhcHHHHHHHHHHHhh
Q 036926 13 KAAKELNVGL-TLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQT 57 (168)
Q Consensus 13 eAAr~LgVs~-T~LKr~CR~lGI~RWP~RKlkSL~~li~~l~~~~~ 57 (168)
.|-..|+.+- |+.+.+.|+||+++ +..++.+-.|+.-+.
T Consensus 19 ~~i~~L~~~~~~Ta~~IAkkLg~sK------~~vNr~LY~L~kkG~ 58 (75)
T 1sfu_A 19 KEVLSLNTNDYTTAISLSNRLKINK------KKINQQLYKLQKEDT 58 (75)
T ss_dssp HHHHTSCTTCEECHHHHHHHTTCCH------HHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCcchHHHHHHHHHCCCH------HHHHHHHHHHHHCCC
Confidence 3445778887 88888888888864 456777777777554
No 249
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=44.84 E-value=16 Score=26.92 Aligned_cols=26 Identities=12% Similarity=0.094 Sum_probs=21.5
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+.+|..+.|..||++..++-|..+++
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l 202 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRL 202 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 45789999999999999888776654
No 250
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=44.75 E-value=16 Score=26.34 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=14.4
Q ss_pred cCcHHHHHHHcCCChhHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr 27 (168)
.+.+.++|++.|||..+|-+
T Consensus 32 ~~t~~~IA~~agvs~~tlY~ 51 (196)
T 2qwt_A 32 GVPMDEIARRAGVGAGTVYR 51 (196)
T ss_dssp TSCHHHHHHHTTSCHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHH
Confidence 67777777777777777643
No 251
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=44.50 E-value=15 Score=26.05 Aligned_cols=22 Identities=9% Similarity=-0.074 Sum_probs=15.8
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-.+.+.++|++.|||..+|-+
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~ 53 (220)
T 3lhq_A 32 VSATSLAEIANAAGVTRGAIYW 53 (220)
T ss_dssp STTCCHHHHHHHHTCCHHHHHH
T ss_pred cccCCHHHHHHHhCCCceeehh
Confidence 4457777888888888777744
No 252
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=44.48 E-value=17 Score=29.28 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=23.0
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
|+.+-+++..|+|..||++..++|....
T Consensus 122 L~~~eg~s~~EIA~~lgis~~tVks~l~ 149 (286)
T 3n0r_A 122 LTALEGFTPTEAAQILDCDFGEVERLIG 149 (286)
T ss_dssp HHHTTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred EEeeCCCCHHHHHHHhCcCHHHHHHHHH
Confidence 4456689999999999999988876544
No 253
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=44.24 E-value=17 Score=25.55 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=18.8
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
-++++.++|++.|||..+| |+.+.+.+.++..+
T Consensus 33 ~~~ti~~Ia~~agvs~~t~-------------Y~~F~sK~~L~~~~ 65 (203)
T 3f1b_A 33 HETSMDAIAAKAEISKPML-------------YLYYGSKDELFAAC 65 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHH-------------HHHCCSHHHHHHHH
T ss_pred ccccHHHHHHHhCCchHHH-------------HHHhCCHHHHHHHH
Confidence 3455555555555555555 55566666665544
No 254
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=44.21 E-value=22 Score=25.04 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=23.3
Q ss_pred hhhccCcHHHHHHHc-CCChhHHHHHHHH
Q 036926 4 SQYFYMPITKAAKEL-NVGLTLLKKRCRE 31 (168)
Q Consensus 4 ~~yF~lPi~eAAr~L-gVs~T~LKr~CR~ 31 (168)
+.+++++..++++.| |...|++-..|++
T Consensus 42 r~~t~~Sl~~IG~~fggrdHsTV~ha~~k 70 (94)
T 1j1v_A 42 KELTNHSLPEIGDAFGGRDHTTVLHACRK 70 (94)
T ss_dssp HHHSCCCHHHHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 456788999999999 7898888888876
No 255
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=44.10 E-value=17 Score=25.00 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=20.7
Q ss_pred hhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 4 SQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 4 ~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
...=.+...|.|+.||||..++.|--.
T Consensus 12 ~~~g~vsv~eLa~~l~VS~~TIRrdL~ 38 (78)
T 1xn7_A 12 ALRGRMEAAQISQTLNTPQPMINAMLQ 38 (78)
T ss_dssp HHSCSBCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 334467889999999999988876443
No 256
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=44.05 E-value=15 Score=25.52 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=21.3
Q ss_pred hhccCcHHHHHHHcCCChhHHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKRC 29 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~C 29 (168)
.|-...+.++|++.|||..+|-+..
T Consensus 25 G~~~~ti~~Ia~~agvs~~t~Y~~F 49 (188)
T 3qkx_A 25 GLNQLSMLKLAKEANVAAGTIYLYF 49 (188)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHHHS
T ss_pred CcccCCHHHHHHHhCCCcchHHHHc
Confidence 4557999999999999999998753
No 257
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=44.01 E-value=17 Score=25.69 Aligned_cols=36 Identities=22% Similarity=0.105 Sum_probs=21.9
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQE 54 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l~~ 54 (168)
|-++.+.++|++.|||..+| |+-+.|.+.++..+-+
T Consensus 35 ~~~~ti~~Ia~~agvs~~t~-------------Y~~F~sK~~L~~~~~~ 70 (208)
T 3cwr_A 35 AAAMTMEGVASEAGIAKKTL-------------YRFASGRADLIGLLVE 70 (208)
T ss_dssp GGGCCHHHHHHHHTCCHHHH-------------HHHCSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHhCCCHHHH-------------HHHcCCHHHHHHHHHH
Confidence 34566666666666666665 4556666666666543
No 258
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=43.97 E-value=77 Score=21.90 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=23.4
Q ss_pred cCCChhHHHHHHHHcCC-CCCCchhhhcHHHHHHHH
Q 036926 18 LNVGLTLLKKRCRELNI-RRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 18 LgVs~T~LKr~CR~lGI-~RWP~RKlkSL~~li~~l 52 (168)
-|+..+++..+|++.|| +.==|+-+.+.+.++..+
T Consensus 28 ~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~ 63 (199)
T 3on2_A 28 DGVDGLSLRQLAREAGVSHAAPSKHFRDRQALLDAL 63 (199)
T ss_dssp HCGGGCCHHHHHHHTC-----CCCSSSSHHHHHHHH
T ss_pred cChhhhhHHHHHHHhCCChHHHHHHhCCHHHHHHHH
Confidence 37777888888888887 345577788877776654
No 259
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=43.91 E-value=11 Score=25.85 Aligned_cols=25 Identities=4% Similarity=0.112 Sum_probs=17.7
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 47 ~~~~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3bja_A 47 KVSMSKLIENMGCVPSNMTTMIQRM 71 (139)
T ss_dssp SEEHHHHHHHCSSCCTTHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHH
Confidence 4577888888888877666655543
No 260
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=43.91 E-value=15 Score=28.63 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.4
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.++..+.|+.||||.+++.++.++|
T Consensus 33 ~~s~~eLA~~lglS~stv~~~l~~L 57 (192)
T 1uly_A 33 EMTISQLSEILGKTPQTIYHHIEKL 57 (192)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5789999999999999888877643
No 261
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=43.90 E-value=16 Score=25.47 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=21.5
Q ss_pred hhccCcHHHHHHHcCCChhHHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKRC 29 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~C 29 (168)
.|-.+.+.++|++.|||.++|-+..
T Consensus 26 G~~~~tv~~Ia~~agvs~~t~Y~~F 50 (195)
T 3ppb_A 26 GFHGTSTATIAREAGVATGTLFHHF 50 (195)
T ss_dssp CSTTSCHHHHHHHHTCCHHHHHHHC
T ss_pred CcccCCHHHHHHHhCCChhHHHHHc
Confidence 4557899999999999999998753
No 262
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=43.87 E-value=16 Score=27.48 Aligned_cols=26 Identities=8% Similarity=0.031 Sum_probs=18.7
Q ss_pred CcHHHHHHHcCCChhHHHHHH----HHcCC
Q 036926 9 MPITKAAKELNVGLTLLKKRC----RELNI 34 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~C----R~lGI 34 (168)
-.+..||+.||||.+++-+.- .++|+
T Consensus 39 gS~s~AA~~L~iSqsavS~~I~~LE~~lG~ 68 (135)
T 2ijl_A 39 GSISAAGRAMDMSYRRAWLLVDALNHMFRQ 68 (135)
T ss_dssp SCHHHHHHHTTCCHHHHHHHHHHHHHHBSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 367899999999988765443 34554
No 263
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=43.74 E-value=15 Score=25.97 Aligned_cols=22 Identities=5% Similarity=-0.023 Sum_probs=16.4
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-...+.++|++.|||..+|-+
T Consensus 32 ~~~~t~~~IA~~agvs~~t~Y~ 53 (191)
T 4aci_A 32 YEGATVRRLEEATGKSRGAIFH 53 (191)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHH
T ss_pred cccCCHHHHHHHHCCCchHHHH
Confidence 4457788888888888888744
No 264
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=43.68 E-value=79 Score=21.91 Aligned_cols=33 Identities=6% Similarity=-0.055 Sum_probs=18.9
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
-...+.++|++.|||..+| |+-+.+-+.++..+
T Consensus 29 ~~~t~~~IA~~agvs~~tl-------------Y~~F~sK~~L~~~~ 61 (197)
T 3rd3_A 29 SGVGLNEILQSAGVPKGSF-------------YHYFKSKEQFGQAL 61 (197)
T ss_dssp TTCCHHHHHHHHTCCHHHH-------------TTTCSCHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChhhH-------------HHHcCCHHHHHHHH
Confidence 3455666666666666555 55556666655443
No 265
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=43.54 E-value=17 Score=25.31 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=20.0
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-...+.++|++.|||..+| |+.+.+-+.++..+
T Consensus 28 ~~~~t~~~IA~~agvs~~t~-------------Y~~F~sK~~L~~~~ 61 (191)
T 3on4_A 28 YNAFSFKDIATAINIKTASI-------------HYHFPSKEDLGVAV 61 (191)
T ss_dssp GGGCCHHHHHHHHTCCHHHH-------------HHHCSSHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCcchh-------------hhcCCCHHHHHHHH
Confidence 33466666666666666666 45556666665543
No 266
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=43.45 E-value=20 Score=23.33 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=19.6
Q ss_pred ccCcHHHHHHHc-----CCChhHHHHHHH
Q 036926 7 FYMPITKAAKEL-----NVGLTLLKKRCR 30 (168)
Q Consensus 7 F~lPi~eAAr~L-----gVs~T~LKr~CR 30 (168)
-++.+.|+++.| +||.+|+-|.-.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~ 60 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLN 60 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHH
Confidence 368899999999 999988877654
No 267
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=43.42 E-value=9.3 Score=29.01 Aligned_cols=28 Identities=7% Similarity=0.255 Sum_probs=19.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHH----HHcCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRC----RELNIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~C----R~lGI~ 35 (168)
+-.+..||++||||.+++-+.- .++|++
T Consensus 18 ~~s~s~AA~~L~isq~avS~~i~~LE~~lg~~ 49 (306)
T 3fzv_A 18 CGSVAEASRKLYIAQPSISTAVKGLEESFGVQ 49 (306)
T ss_dssp SSSHHHHHHHHTCCC-CHHHHHHHHHHHC-CC
T ss_pred hCCHHHHHHHhCCCchHHHHHHHHHHHHhCCe
Confidence 4567899999999987665544 467863
No 268
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=43.27 E-value=17 Score=25.27 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=21.6
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-.+.+.++|++.|||..+| |+.+.+-+.++..+
T Consensus 22 ~~~~t~~~Ia~~agvs~~t~-------------Y~~F~sK~~L~~~~ 55 (170)
T 3egq_A 22 PHEVSIEEIAREAKVSKSLI-------------FYHFESKQKLLEEA 55 (170)
T ss_dssp GGGCCHHHHHHHHTSCHHHH-------------HHHCSSHHHHHHHH
T ss_pred CccCcHHHHHHHhCCCchhH-------------HHHcCCHHHHHHHH
Confidence 34567777777777777776 44556666665554
No 269
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=43.14 E-value=18 Score=26.85 Aligned_cols=36 Identities=6% Similarity=-0.087 Sum_probs=27.3
Q ss_pred ccCcHHHHHHHcCCChhHHHHHH---HHcCCCCCCchhh
Q 036926 7 FYMPITKAAKELNVGLTLLKKRC---RELNIRRWPHRKL 42 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~C---R~lGI~RWP~RKl 42 (168)
+.++..+.|..||++..++-|.. ++-|+-..-++++
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i 200 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRGH 200 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTTC
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCce
Confidence 45899999999999986665554 4557767777773
No 270
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=43.01 E-value=20 Score=24.93 Aligned_cols=25 Identities=0% Similarity=0.104 Sum_probs=20.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~L 80 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRM 80 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHH
Confidence 5688899999999988777776655
No 271
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=42.88 E-value=13 Score=28.46 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=19.6
Q ss_pred cCcHHHHHHHcCCChhHHHHHH----HHcCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRC----RELNI 34 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~C----R~lGI 34 (168)
+-.+..||++||||.+++-+.- .++|+
T Consensus 20 ~gs~s~AA~~L~isq~avS~~i~~LE~~lg~ 50 (303)
T 3isp_A 20 LGSFDAAAERLHVTPSAVSQRIKSLEQQVGQ 50 (303)
T ss_dssp HTCHHHHHTTTTCCHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHhCC
Confidence 3467899999999988765544 35564
No 272
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=42.86 E-value=8.6 Score=27.09 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=17.6
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l 52 (168)
|+..+++..+|++.||.+ =-|+-+.+.+.++..+
T Consensus 25 G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 59 (183)
T 1zk8_A 25 GVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNL 59 (183)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHH
T ss_pred CccccCHHHHHHHcCCCchHHHHHcCCHHHHHHHH
Confidence 444555555555555422 1256666666665554
No 273
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=42.85 E-value=15 Score=25.60 Aligned_cols=25 Identities=8% Similarity=0.091 Sum_probs=18.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.|||+.+++-+..++|
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~L 78 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEV 78 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4678888888888887777666654
No 274
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=42.81 E-value=10 Score=26.82 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=20.4
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCC
Q 036926 11 ITKAAKEL----NVGLTLLKKRCRELNIR 35 (168)
Q Consensus 11 i~eAAr~L----gVs~T~LKr~CR~lGI~ 35 (168)
|-+||.+| |+..+++..+|++.||.
T Consensus 19 Il~aa~~l~~~~G~~~~ti~~Ia~~agvs 47 (203)
T 3f1b_A 19 MLDAAVDVFSDRGFHETSMDAIAAKAEIS 47 (203)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHhCCc
Confidence 44566555 99999999999999995
No 275
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=42.75 E-value=15 Score=25.88 Aligned_cols=33 Identities=9% Similarity=0.137 Sum_probs=24.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCch
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHR 40 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~R 40 (168)
.+++.+.|+.|||+.+++-+...+|-=..|=.|
T Consensus 51 ~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 51 ALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp CBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 578899999999998888777776544444443
No 276
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=42.65 E-value=17 Score=26.60 Aligned_cols=39 Identities=13% Similarity=-0.059 Sum_probs=27.4
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHH---HcCCCCCCchhhhcH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCR---ELNIRRWPHRKLMSL 45 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR---~lGI~RWP~RKlkSL 45 (168)
+.+|..+.|..||++..++-|..+ +-|+-..-++++.=+
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 186 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLL 186 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEEe
Confidence 458899999999999877766554 457645555655443
No 277
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=42.62 E-value=19 Score=25.52 Aligned_cols=22 Identities=9% Similarity=0.134 Sum_probs=13.4
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-..++.++|++.|||..+|-+
T Consensus 34 ~~~~t~~~Ia~~agvs~~t~Y~ 55 (213)
T 2qtq_A 34 VVDISLSELSLRSGLNSALVKY 55 (213)
T ss_dssp SSCCCHHHHHHHHCCCHHHHHH
T ss_pred cccccHHHHHHHhCCChhhHhH
Confidence 3356666666666666666643
No 278
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=42.61 E-value=16 Score=26.62 Aligned_cols=39 Identities=10% Similarity=-0.049 Sum_probs=27.2
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHH---HcCCCCCCchhhhcH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCR---ELNIRRWPHRKLMSL 45 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR---~lGI~RWP~RKlkSL 45 (168)
+.++..+.|..||++..++-|..+ +-|+-..-++++.=+
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 179 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRREGLIATAYRRVYLL 179 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEEC
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEe
Confidence 457899999999999877766554 447545555655443
No 279
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=42.56 E-value=9.1 Score=28.33 Aligned_cols=42 Identities=12% Similarity=0.161 Sum_probs=25.3
Q ss_pred HHHHHHHc-----CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHH
Q 036926 11 ITKAAKEL-----NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNV 52 (168)
Q Consensus 11 i~eAAr~L-----gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l 52 (168)
|.+||.+| |+.-++++.+|++.||.| =-|+-.++.+.++..+
T Consensus 24 I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y~~F~~K~~L~~~~ 71 (185)
T 3o60_A 24 LYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHKEIIQVIEVQ 71 (185)
T ss_dssp HHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHH
T ss_pred HHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 34455554 566666666666666643 2466677777776654
No 280
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=42.53 E-value=18 Score=26.82 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=30.0
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHH---HcCCCCCCchhhhcHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCR---ELNIRRWPHRKLMSLQ 46 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR---~lGI~RWP~RKlkSL~ 46 (168)
+.+|..+.|..||+++.++-|.-+ +-|+-+.-++++.=++
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d 216 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVTLLD 216 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEESC
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEEEeC
Confidence 457899999999999877766654 5587677777775443
No 281
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=42.46 E-value=17 Score=24.56 Aligned_cols=25 Identities=12% Similarity=0.286 Sum_probs=21.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.++..|.|+.|||+.+++-+.-+.|
T Consensus 36 ~~~~~ela~~l~is~~tvs~~L~~L 60 (102)
T 3pqk_A 36 EFSVGELEQQIGIGQPTLSQQLGVL 60 (102)
T ss_dssp CBCHHHHHHHHTCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3678999999999999888777665
No 282
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=42.32 E-value=18 Score=25.31 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=21.5
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-.+.+.++|++.|||..+| |+-+.+.+.++..+
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~-------------Y~~F~sK~~L~~~~ 59 (206)
T 3dew_A 26 FYGVSIRELAQAAGASISMI-------------SYHFGGKEGLYAAV 59 (206)
T ss_dssp GGGCCHHHHHHHHTCCHHHH-------------HHHSCHHHHHHHHH
T ss_pred cccCcHHHHHHHhCCCHHHH-------------HHHcCCHHHHHHHH
Confidence 34566777777777777666 44555666666554
No 283
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=42.26 E-value=1.1e+02 Score=23.03 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=21.5
Q ss_pred CChhHHHHHHHHcCCCCCCchhhhcHHHHHHHHHHHhh
Q 036926 20 VGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQT 57 (168)
Q Consensus 20 Vs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l~~~~~ 57 (168)
.-+..||.+||.+|++-. -+| .-+++.|++...
T Consensus 40 LtVaELK~~cr~~GL~~s-GkK----aeLi~RI~~yl~ 72 (114)
T 2rnn_A 40 LKVSELKDICRSVSFPVS-GRK----AVLQDLIRNFLQ 72 (114)
T ss_dssp CCHHHHHHHHHHTTCCTT-SCH----HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCcC-CcH----HHHHHHHHHHHH
Confidence 667889999999998421 134 345555555543
No 284
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=42.23 E-value=15 Score=25.62 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=15.1
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-...+.++|++.|||..+|-+
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~Y~ 47 (195)
T 3pas_A 26 FSATSVGKIAKAAGLSPATLYI 47 (195)
T ss_dssp HHHCCHHHHHHHHTSCHHHHHH
T ss_pred hHhcCHHHHHHHhCCCchHHHH
Confidence 4456777777777777777643
No 285
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=42.13 E-value=14 Score=25.70 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.3
Q ss_pred hhccCcHHHHHHHcCCChhHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKR 28 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~ 28 (168)
.|-...+.++|++.|||.++|-+.
T Consensus 29 G~~~~tv~~Ia~~agvs~~t~Y~~ 52 (177)
T 3kkc_A 29 DYSKITVQDVIGLANVGRSTFYSH 52 (177)
T ss_dssp CTTTCCHHHHHHHHCCCHHHHTTT
T ss_pred ChhHhhHHHHHHHhCCcHhhHHHH
Confidence 455889999999999999998653
No 286
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=41.95 E-value=17 Score=28.94 Aligned_cols=25 Identities=12% Similarity=0.256 Sum_probs=20.5
Q ss_pred cCc-HHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMP-ITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lP-i~eAAr~LgVs~T~LKr~CR~l 32 (168)
-+| ..+.|+.+|||.+++.+....|
T Consensus 33 ~lPse~~La~~~~vSr~tvr~Al~~L 58 (243)
T 2wv0_A 33 PLPSEREYAEQFGISRMTVRQALSNL 58 (243)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 354 7899999999999998877654
No 287
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=41.93 E-value=16 Score=25.59 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=20.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.++|+.|||+.+++-+..++|
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~L 75 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADRL 75 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4678899999999988877777654
No 288
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=41.84 E-value=19 Score=25.04 Aligned_cols=22 Identities=5% Similarity=0.137 Sum_probs=14.1
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-.+.+.++|++.|||..+|-+
T Consensus 26 ~~~~ti~~Ia~~agvs~~t~Y~ 47 (194)
T 2g7s_A 26 YNSFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHH
T ss_pred cccCCHHHHHHHhCCCchHHHH
Confidence 3456667777777777766643
No 289
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=41.76 E-value=21 Score=26.49 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=27.1
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHH---HcCCCCCCchhhhcH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCR---ELNIRRWPHRKLMSL 45 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR---~lGI~RWP~RKlkSL 45 (168)
+.+|..+.|..||++..++-|.-+ +-|+-..-++++.=+
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 220 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKII 220 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEES
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEEEe
Confidence 468899999999999877666554 446545555555444
No 290
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=41.74 E-value=18 Score=26.60 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=20.9
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
++..+.|+.+||+...|.++..+|
T Consensus 31 ~~~~~iA~~~~i~~~~l~kil~~L 54 (149)
T 1ylf_A 31 CTSDYMAESVNTNPVVIRKIMSYL 54 (149)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 789999999999999999887644
No 291
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=41.52 E-value=16 Score=25.72 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=24.9
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCch
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHR 40 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~R 40 (168)
.+++.+.|+.|||+.+++-+...+|-=..|=.|
T Consensus 54 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r 86 (150)
T 3fm5_A 54 GVNQRGVAATMGLDPSQIVGLVDELEERGLVVR 86 (150)
T ss_dssp CCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEe
Confidence 368899999999999988888877644444333
No 292
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=41.42 E-value=16 Score=25.32 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=19.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.++..|.|+.|||+.+++.+.-+.|
T Consensus 38 ~~s~~eLa~~lgis~stvs~~L~~L 62 (108)
T 2kko_A 38 ERAVEAIATATGMNLTTASANLQAL 62 (108)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3578899999999988887665543
No 293
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=41.30 E-value=19 Score=25.29 Aligned_cols=25 Identities=20% Similarity=0.092 Sum_probs=20.9
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
++.+++.|+.+|++.+++-++..+|
T Consensus 36 gi~qkeLa~~~~l~~~tvt~iLk~L 60 (91)
T 2dk5_A 36 GIWSRDVRYKSNLPLTEINKILKNL 60 (91)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5889999999999998877776655
No 294
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=41.23 E-value=19 Score=25.53 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=15.8
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-+.++.++|++.|||..+|-+
T Consensus 21 ~~~~s~~~IA~~agvsk~t~Y~ 42 (190)
T 3vpr_A 21 YEATSVQDLAQALGLSKAALYH 42 (190)
T ss_dssp STTCCHHHHHHHHTCCHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHHH
Confidence 4457778888888888777744
No 295
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=41.21 E-value=15 Score=25.64 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=18.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.+++.+.|+.|||+.+++-+...++-
T Consensus 50 ~~t~~eLa~~l~~~~~tvs~~l~~L~ 75 (140)
T 3hsr_A 50 KLNIKKLGERVFLDSGTLTPLLKKLE 75 (140)
T ss_dssp EEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 45677888888888777776666543
No 296
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=41.19 E-value=12 Score=26.83 Aligned_cols=32 Identities=16% Similarity=0.119 Sum_probs=17.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
+..+.++|++.|||..+| |+.+.+-+.++..+
T Consensus 37 ~~t~~~IA~~agvs~~t~-------------Y~~F~sK~~L~~~~ 68 (218)
T 3gzi_A 37 QVSIREIASLAGTDPGLI-------------RYYFGSKEKLFSTM 68 (218)
T ss_dssp CCCHHHHHHHHTSCTHHH-------------HHHHSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHH-------------HHHcCCHHHHHHHH
Confidence 455555555555555555 45555555555443
No 297
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=41.14 E-value=17 Score=25.57 Aligned_cols=26 Identities=12% Similarity=0.161 Sum_probs=20.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.+++.+.|+.|||+.+++-+..++|-
T Consensus 61 ~~t~~ela~~l~~s~~tvs~~l~~Le 86 (153)
T 2pex_A 61 ERSVSEIGERLYLDSATLTPLLKRLQ 86 (153)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 46788899999999888777766553
No 298
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=41.14 E-value=20 Score=25.65 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=20.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+...++|+.|||+.+++-+.-+.|
T Consensus 59 ~~s~~ela~~lgis~stvs~~L~~L 83 (122)
T 1r1t_A 59 ELCVGDLAQAIGVSESAVSHQLRSL 83 (122)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4678899999999998887766544
No 299
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=41.03 E-value=19 Score=25.29 Aligned_cols=24 Identities=8% Similarity=0.221 Sum_probs=19.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
..|..++|++||++.+...|.-..
T Consensus 29 ~~Ta~~IAkkLg~sK~~vNr~LY~ 52 (75)
T 1sfu_A 29 YTTAISLSNRLKINKKKINQQLYK 52 (75)
T ss_dssp EECHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHHCCCHHHHHHHHHH
Confidence 367888999999999988876543
No 300
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=41.02 E-value=21 Score=25.36 Aligned_cols=33 Identities=9% Similarity=0.049 Sum_probs=20.1
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
-+.++.++|++.|||..+| |+.+.|-+.++..+
T Consensus 26 ~~~t~~~IA~~agvs~~tl-------------Y~~F~sK~~L~~av 58 (192)
T 2zcm_A 26 DGTTLDDISKSVNIKKASL-------------YYHYDNKEEIYRKS 58 (192)
T ss_dssp TTCCHHHHHHHTTCCHHHH-------------HHHTCCHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHH-------------HHHCCCHHHHHHHH
Confidence 3566666666666666666 55555666665544
No 301
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=40.91 E-value=34 Score=26.53 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=20.1
Q ss_pred CCChhHHHHHHHHcCCC-CCCchhhhcHHHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIR-RWPHRKLMSLQTLIKNVQE 54 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~-RWP~RKlkSL~~li~~l~~ 54 (168)
|+.-+++.++|+++||. .=-|+-+.+.+.++..+-+
T Consensus 23 G~~~~S~r~IA~~aGvs~~tlY~hF~~K~~Ll~~~~~ 59 (234)
T 2opt_A 23 GLDALSMRRLAQELKTGHASLYAHVGNRDELLDLVFD 59 (234)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHH
T ss_pred CccccCHHHHHHHHCCChhHHHHHcCCHHHHHHHHHH
Confidence 55555555555555542 1236667777777766544
No 302
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=40.80 E-value=20 Score=25.43 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=13.2
Q ss_pred ccCcHHHHHHHcCCChhHHH
Q 036926 7 FYMPITKAAKELNVGLTLLK 26 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LK 26 (168)
-...+.++|++.|||..+|-
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y 50 (202)
T 3lwj_A 31 YNTSIRDIIALSEVGTGTFY 50 (202)
T ss_dssp TTCCHHHHHHHHCSCHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHH
Confidence 35667777777777776664
No 303
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=40.78 E-value=21 Score=25.40 Aligned_cols=32 Identities=22% Similarity=0.040 Sum_probs=18.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
.+.+.++|++.|||..+| |+.+.+-+.++..+
T Consensus 38 ~~s~~~Ia~~agvs~~t~-------------Y~~F~sK~~L~~~~ 69 (212)
T 1pb6_A 38 GTRLEQIAELAGVSKTNL-------------LYYFPSKEALYIAV 69 (212)
T ss_dssp TCCHHHHHHHTTSCHHHH-------------HHHSSSHHHHHHHH
T ss_pred hhhHHHHHHHHCCChhHH-------------HHhCCCHHHHHHHH
Confidence 455555555555555555 55566666665554
No 304
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=40.74 E-value=20 Score=27.25 Aligned_cols=26 Identities=8% Similarity=0.098 Sum_probs=21.7
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+.++..+.|..||++..++-|..+++
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L 217 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDL 217 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHH
Confidence 46788999999999999988877654
No 305
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=40.69 E-value=20 Score=27.19 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=34.8
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHH---HcCCCCCCchhhhcHHHHHHHHHHHhh
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCR---ELNIRRWPHRKLMSLQTLIKNVQELQT 57 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR---~lGI~RWP~RKlkSL~~li~~l~~~~~ 57 (168)
+.+|..+.|..||++..++-|.-+ +-||-+.-.+++.=++ .+.|++...
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i~d--~~~L~~~a~ 227 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYN--LGELKHLSE 227 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEESC--HHHHHHHHT
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEEec--HHHHHHHHc
Confidence 467999999999999987776655 4587677777766553 344555544
No 306
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=40.54 E-value=19 Score=25.58 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=19.9
Q ss_pred hhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.|-.+.+.++|++.|||..+|-+...
T Consensus 24 G~~~~t~~~Ia~~agvs~~t~Y~~F~ 49 (195)
T 2dg7_A 24 GYDNVTVTDIAERAGLTRRSYFRYFP 49 (195)
T ss_dssp CGGGCCHHHHHHHTTCCHHHHHHHCS
T ss_pred CccccCHHHHHHHhCCCHHHHHHHcC
Confidence 35568888888888888888877654
No 307
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=40.53 E-value=17 Score=25.70 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=20.7
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.++..++|+.|||+.+++-+.-+.|
T Consensus 56 ~~s~~eLa~~l~is~stvs~~L~~L 80 (122)
T 1u2w_A 56 ELCVCDIANILGVTIANASHHLRTL 80 (122)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4678999999999999888777653
No 308
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=40.38 E-value=20 Score=29.42 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=23.5
Q ss_pred cCcHHHHHHHcCCChhHHHHH---HHHcCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKR---CRELNIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~---CR~lGI~ 35 (168)
.+.+.|.|+.||||..++.|- +++.|+-
T Consensus 21 ~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v 51 (315)
T 2w48_A 21 DMTQAQIARELGIYRTTISRLLKRGREQGIV 51 (315)
T ss_dssp CCCHHHHHHHTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcE
Confidence 688999999999999888875 5677864
No 309
>1tns_A MU-transposase; DNA-binding protein; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1tnt_A
Probab=40.37 E-value=13 Score=25.91 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=24.3
Q ss_pred CcHHHHHHH--cCCChhHHHHHHHHcCCCCCCchhhhc
Q 036926 9 MPITKAAKE--LNVGLTLLKKRCRELNIRRWPHRKLMS 44 (168)
Q Consensus 9 lPi~eAAr~--LgVs~T~LKr~CR~lGI~RWP~RKlkS 44 (168)
+..+|.|.. |..+...+.+++++-| |++|+...
T Consensus 5 ~ta~ELa~l~gLP~s~~gi~~~A~re~---W~~R~r~G 39 (76)
T 1tns_A 5 VSPKELANLPGLPKTSAGVIYVAKKQG---WQNRTRAG 39 (76)
T ss_dssp ECHHHHTTCSSSCSSHHHHHHHHHTTC---CCCCCCTT
T ss_pred CcHHHHhcCCCCCCCHHHHHHHHHHcC---Ccceeccc
Confidence 456677766 6677777888888765 99998764
No 310
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=40.29 E-value=20 Score=28.35 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=20.6
Q ss_pred cCc-HHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMP-ITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lP-i~eAAr~LgVs~T~LKr~CR~l 32 (168)
-+| ..+.|+++|||.+++.+....|
T Consensus 28 ~lPse~~La~~~~vSr~tvr~Al~~L 53 (239)
T 3bwg_A 28 KLPVLETLMAQFEVSKSTITKSLELL 53 (239)
T ss_dssp BCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 464 8899999999999998876644
No 311
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=40.21 E-value=10 Score=26.79 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=17.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
++.+.++|++.|||..+| |+-+.|-+.++..+
T Consensus 37 ~~s~~~Ia~~agvs~~t~-------------Y~~F~sK~~L~~~~ 68 (206)
T 3kz9_A 37 RGGHADIAEIAQVSVATV-------------FNYFPTREDLVDEV 68 (206)
T ss_dssp SCCHHHHHHHHTSCHHHH-------------HHHCCSHHHHHHHH
T ss_pred cccHHHHHHHhCCCHHHH-------------HHHcCCHHHHHHHH
Confidence 355555555555555554 45556666655443
No 312
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=39.94 E-value=19 Score=24.60 Aligned_cols=28 Identities=7% Similarity=0.126 Sum_probs=23.7
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
.++..|+|+.||++.+++-+.-+.|-=.
T Consensus 41 ~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 41 ALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4678999999999999999888877644
No 313
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=39.68 E-value=25 Score=23.87 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=22.2
Q ss_pred cCcHHHHHHHcCC-ChhHHHHHHHH-cCCC
Q 036926 8 YMPITKAAKELNV-GLTLLKKRCRE-LNIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgV-s~T~LKr~CR~-lGI~ 35 (168)
++|+.++|..+|. +.+.+-|.+++ .|+.
T Consensus 70 ~~si~~IA~~~Gf~~~s~F~r~Fk~~~G~t 99 (108)
T 3oou_A 70 KDNLTIIAGKSGYTDMAYFYRQFKKHTGET 99 (108)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHSSC
T ss_pred CCCHHHHHHHcCCCChHHHHHHHHHHhCcC
Confidence 6899999999999 47888777765 5664
No 314
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=39.65 E-value=19 Score=29.14 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=27.6
Q ss_pred hhhhccCcHHHHHHHcCCChhHHHHHHHHcCCC
Q 036926 3 ISQYFYMPITKAAKELNVGLTLLKKRCRELNIR 35 (168)
Q Consensus 3 l~~yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~ 35 (168)
|..+|...+++.|+.+|||.+.+-|.-.-..+|
T Consensus 37 L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A~LP 69 (189)
T 3mky_B 37 LQNEFAGNISALADAENISRKIITRCINTAKLP 69 (189)
T ss_dssp HHTTTTTCHHHHHHHHTSCHHHHHHHHHHHHSC
T ss_pred HhcCcccCHHHHHHHHCCCHHHHHHHHHHhcCC
Confidence 457889999999999999999998876655554
No 315
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=39.54 E-value=6.2 Score=31.32 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 9 MPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.+++++|++.|||.+|+-|.-...+
T Consensus 3 ~ti~diA~~agVS~~TVSrvln~~~ 27 (330)
T 3ctp_A 3 ANIREIAKRAGISIATVSRHLNNTG 27 (330)
T ss_dssp -------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHcCCC
Confidence 3689999999999999988776543
No 316
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=39.52 E-value=6.2 Score=31.34 Aligned_cols=23 Identities=13% Similarity=0.185 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
.+++++|++.|||.+|+-|.-..
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 46899999999999988776554
No 317
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=39.43 E-value=19 Score=25.34 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=23.3
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQE 54 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l~~ 54 (168)
|-.+.+.++|++.|||..+| |+.+.+-+.++..+-+
T Consensus 25 ~~~~t~~~IA~~agvs~~tl-------------Y~~F~sK~~L~~~~~~ 60 (186)
T 2jj7_A 25 YEGTSIQEIAKEAKVNVAMA-------------SYYFNGKENLYYEVFK 60 (186)
T ss_dssp HHHCCHHHHHHHHTSCHHHH-------------HHHHSSHHHHHHHHHH
T ss_pred CccCCHHHHHHHhCCChhhh-------------hhhcCCHHHHHHHHHH
Confidence 44577788888888888777 4455555666555433
No 318
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=39.38 E-value=39 Score=25.43 Aligned_cols=36 Identities=6% Similarity=0.096 Sum_probs=21.1
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNVQE 54 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l~~ 54 (168)
|+.-+++..+|++.||.+ =-|+.+.+.+.++..+-+
T Consensus 42 G~~~~s~~~IA~~aGvs~~tlY~~F~~K~~L~~a~~~ 78 (211)
T 3fiw_A 42 GLDGVSTRRLAKRLGVEQPSLYWYFRTKRDLLTAMAQ 78 (211)
T ss_dssp CGGGCCHHHHHHHHTSCTHHHHTTCSSHHHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHH
Confidence 555555555555555522 236777777888776643
No 319
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=39.37 E-value=19 Score=25.03 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=17.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.+++.+.|+.|||+.+++-+...+|-
T Consensus 51 ~~t~~eLa~~l~~~~~tvs~~l~~L~ 76 (142)
T 3ech_A 51 GLNLQDLGRQMCRDKALITRKIRELE 76 (142)
T ss_dssp TCCHHHHHHHHC---CHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 57888999999999877777666553
No 320
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=39.24 E-value=6.3 Score=31.35 Aligned_cols=26 Identities=12% Similarity=-0.029 Sum_probs=0.0
Q ss_pred hhhhhccCcHHHHHHHcCCChhHHHH
Q 036926 2 TISQYFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 2 ~l~~yF~lPi~eAAr~LgVs~T~LKr 27 (168)
.+++--++.+.+.|+.+|||.+++.+
T Consensus 37 ~~r~~~g~t~~~la~~~g~s~~~is~ 62 (311)
T 4ich_A 37 GLIHSRPGAQREFAAAIGLDESKLSK 62 (311)
T ss_dssp --------------------------
T ss_pred HHHHHCCCCHHHHHHHhCCCHHHHHH
Confidence 35566789999999999988765443
No 321
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=39.23 E-value=25 Score=23.66 Aligned_cols=26 Identities=12% Similarity=0.184 Sum_probs=21.5
Q ss_pred hhhccCcHHHHHHHcCCChhHHHHHH
Q 036926 4 SQYFYMPITKAAKELNVGLTLLKKRC 29 (168)
Q Consensus 4 ~~yF~lPi~eAAr~LgVs~T~LKr~C 29 (168)
..||..|+.++|..|||+...+.+.-
T Consensus 44 ~GYL~~~l~eia~~l~~~~~eve~vL 69 (76)
T 2k9l_A 44 KGFLSKSVEEISDVLRCSVEELEKVR 69 (76)
T ss_dssp SSTTCCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCCHHHHHHHH
Confidence 47999999999999999987665543
No 322
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=39.22 E-value=21 Score=25.60 Aligned_cols=34 Identities=9% Similarity=0.097 Sum_probs=20.4
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-...+.++|++.|||..+| |+.+.|-+.++..+
T Consensus 30 ~~~~t~~~IA~~agvsk~tl-------------Y~~F~sKe~L~~~~ 63 (192)
T 2fq4_A 30 FKAVTVDKIAERAKVSKATI-------------YKWWPNKAAVVMDG 63 (192)
T ss_dssp TTTCCHHHHHHHHTCCHHHH-------------HHHCSSHHHHHHHH
T ss_pred cccccHHHHHHHcCCCHHHH-------------HHHCCCHHHHHHHH
Confidence 33556666666666666555 56666667776543
No 323
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=39.09 E-value=11 Score=27.25 Aligned_cols=34 Identities=15% Similarity=0.040 Sum_probs=20.1
Q ss_pred CCChhHHHHHHHHcCCCCC-CchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRRW-PHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~RW-P~RKlkSL~~li~~l 52 (168)
|+..+++..+|++.||.+= =|+-..+.+.++..+
T Consensus 29 G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~ 63 (189)
T 3vp5_A 29 SFHEAKIMHIVKALDIPRGSFYQYFEDLKDAYFYV 63 (189)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred CcccccHHHHHHHhCCChHHHHHHCCCHHHHHHHH
Confidence 6666666666666666432 256666666666554
No 324
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=39.04 E-value=1e+02 Score=21.91 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=12.8
Q ss_pred hccCcHHHHHHHcCCChhHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLK 26 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LK 26 (168)
|-.+.+.++|++.|||..+|-
T Consensus 48 ~~~~t~~~IA~~aGvs~~t~Y 68 (222)
T 3bru_A 48 YSSVGVDEILKAARVPKGSFY 68 (222)
T ss_dssp TTTCCHHHHHHHHTCCHHHHH
T ss_pred CCcCcHHHHHHHhCCCcchhh
Confidence 335666666666666666663
No 325
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=39.03 E-value=22 Score=27.24 Aligned_cols=25 Identities=8% Similarity=0.029 Sum_probs=22.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
..++.++|...||+..+++++++++
T Consensus 159 ~~~~~~i~~~~~v~~~tI~~~~~~l 183 (207)
T 1c9b_A 159 KRTQKEIGDIAGVADVTIRQSYRLI 183 (207)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 5678999999999999999999876
No 326
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=39.01 E-value=20 Score=25.68 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=21.7
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCCC
Q 036926 11 ITKAAKEL----NVGLTLLKKRCRELNIRR 36 (168)
Q Consensus 11 i~eAAr~L----gVs~T~LKr~CR~lGI~R 36 (168)
|-+||.+| |+.-+++..+|++.||.+
T Consensus 22 Il~aA~~l~~~~G~~~~t~~~IA~~agvs~ 51 (218)
T 3gzi_A 22 LILAARNLFIERPYAQVSIREIASLAGTDP 51 (218)
T ss_dssp HHHHHHHHHHTSCCSCCCHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHCCCCcCCHHHHHHHhCCCH
Confidence 44677666 999999999999999954
No 327
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=39.01 E-value=24 Score=25.69 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=20.3
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-+..+.++|++.|||..+| |+.+.|-+.++..+
T Consensus 26 ~~~~s~~~IA~~aGvs~~ti-------------Y~~F~sKe~L~~~v 59 (202)
T 2d6y_A 26 IAGARIDRIAAEARANKQLI-------------YAYYGNKGELFASV 59 (202)
T ss_dssp TTSCCHHHHHHHHTCCHHHH-------------HHHHSSHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHH-------------HHHcCCHHHHHHHH
Confidence 33566666666666666665 55566666665544
No 328
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=38.99 E-value=18 Score=25.39 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=19.9
Q ss_pred hhccCcHHHHHHHcCCChhHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr 27 (168)
.|-+.++.++|++.|||..+|-+
T Consensus 25 G~~~~t~~~Ia~~agvs~~t~Y~ 47 (183)
T 1zk8_A 25 GVQEVTLASLAQTLGVRSPSLYN 47 (183)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHTT
T ss_pred CccccCHHHHHHHcCCCchHHHH
Confidence 45579999999999999999865
No 329
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=38.75 E-value=22 Score=25.11 Aligned_cols=22 Identities=0% Similarity=-0.005 Sum_probs=14.3
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-.+.+.++|++.|||..+|-+
T Consensus 26 ~~~~t~~~IA~~Agvs~~tly~ 47 (194)
T 3dpj_A 26 FAQTSFVDISAAVGISRGNFYY 47 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHH
T ss_pred cccCCHHHHHHHHCCChHHHHH
Confidence 4456677777777777766644
No 330
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=38.74 E-value=23 Score=26.16 Aligned_cols=25 Identities=8% Similarity=0.089 Sum_probs=20.7
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.++..+.|..||++..++-|.-+++
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l 201 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADF 201 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHH
Confidence 4789999999999998887776654
No 331
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=38.69 E-value=23 Score=25.24 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=11.6
Q ss_pred cCcHHHHHHHcCCChhHHH
Q 036926 8 YMPITKAAKELNVGLTLLK 26 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LK 26 (168)
+..+.++|++.|||..+|-
T Consensus 34 ~~s~~~IA~~agvs~~tlY 52 (194)
T 2q24_A 34 DAHLERIAREAGVGSGTLY 52 (194)
T ss_dssp TCCHHHHHHHTTCCHHHHH
T ss_pred CCCHHHHHHHhCCChHHHH
Confidence 3566666666666666653
No 332
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=38.64 E-value=6.5 Score=31.21 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.+++++|++.|||.+|+-|.-+
T Consensus 4 ~ti~diA~~agVS~~TVSrvln 25 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLS 25 (338)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHC
Confidence 4689999999999998876644
No 333
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=38.62 E-value=11 Score=26.46 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=19.0
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l 52 (168)
|+..+++..+|++.||.+ =-|+.+.+.+.++..+
T Consensus 28 G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 62 (196)
T 3he0_A 28 GFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEV 62 (196)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHH
Confidence 555555555555555522 3356666666666554
No 334
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=38.59 E-value=6.5 Score=31.62 Aligned_cols=24 Identities=8% Similarity=0.130 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++++|+..|||.+|+-|.-...
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~~ 27 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQA 27 (349)
T ss_dssp ------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCC
Confidence 478999999999999987765543
No 335
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=38.55 E-value=21 Score=28.29 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=19.8
Q ss_pred cCc-HHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMP-ITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lP-i~eAAr~LgVs~T~LKr~CR~l 32 (168)
-|| ..+.|+.+|||.+++.+.-..|
T Consensus 32 ~lPse~~La~~~~vSr~tvr~Al~~L 57 (236)
T 3edp_A 32 LMPNETALQEIYSSSRTTIRRAVDLL 57 (236)
T ss_dssp --CCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 464 8899999999999998887654
No 336
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=38.41 E-value=13 Score=26.53 Aligned_cols=25 Identities=20% Similarity=0.088 Sum_probs=20.5
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCC
Q 036926 11 ITKAAKEL----NVGLTLLKKRCRELNIR 35 (168)
Q Consensus 11 i~eAAr~L----gVs~T~LKr~CR~lGI~ 35 (168)
|-+||.+| |+..+++..+|++.||.
T Consensus 23 Il~aa~~l~~~~G~~~~s~~~Ia~~agvs 51 (212)
T 1pb6_A 23 ILSAALDTFSQFGFHGTRLEQIAELAGVS 51 (212)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCcchhhHHHHHHHHCCC
Confidence 44566555 99999999999999995
No 337
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=38.39 E-value=15 Score=25.45 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=15.6
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+++.+.|+.|||+.+++-+..++|
T Consensus 52 ~~~~ela~~l~~~~~tvs~~l~~L 75 (142)
T 2bv6_A 52 VNVKKVVTELALDTGTVSPLLKRM 75 (142)
T ss_dssp EEHHHHHHHTTCCTTTHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHH
Confidence 566777777777776655555543
No 338
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=38.36 E-value=22 Score=25.32 Aligned_cols=19 Identities=5% Similarity=0.057 Sum_probs=11.8
Q ss_pred cCcHHHHHHHcCCChhHHH
Q 036926 8 YMPITKAAKELNVGLTLLK 26 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LK 26 (168)
.+.+.++|++.|||..+|-
T Consensus 51 ~~tv~~Ia~~agvs~~t~Y 69 (218)
T 3dcf_A 51 ATSLDDIADRIGFTKPAIY 69 (218)
T ss_dssp TCCHHHHHHHHTCCHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHH
Confidence 4566666666666666663
No 339
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=38.33 E-value=21 Score=25.08 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=20.5
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCC
Q 036926 11 ITKAAKEL----NVGLTLLKKRCRELNIR 35 (168)
Q Consensus 11 i~eAAr~L----gVs~T~LKr~CR~lGI~ 35 (168)
|-+||.+| |+..+++..+|++.||.
T Consensus 22 Il~aa~~l~~~~G~~~~s~~~Ia~~agvs 50 (206)
T 3kz9_A 22 LMEIALEVFARRGIGRGGHADIAEIAQVS 50 (206)
T ss_dssp HHHHHHHHHHHSCCSSCCHHHHHHHHTSC
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHhCCC
Confidence 44566555 99999999999999994
No 340
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=38.31 E-value=26 Score=23.91 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=17.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.||++.+++-+..++|
T Consensus 48 ~~~~~~la~~l~~~~~tvs~~l~~L 72 (138)
T 1jgs_A 48 CITPVELKKVLSVDLGALTRMLDRL 72 (138)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCChHHHHHHHHHH
Confidence 4567778888888877766665544
No 341
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.29 E-value=50 Score=29.68 Aligned_cols=78 Identities=8% Similarity=0.212 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHhhhhhhhccccCCCcccccCCCCccccccchhhhhhh
Q 036926 60 EGSEERLREALGILERERKLIEERPDLEMEDTTKRLRQACFKANYKKRKFMGTMMGPMVSTSSCSSRHHHQVLLDADIAY 139 (168)
Q Consensus 60 ~~s~~~l~~ai~~Lerek~lIee~P~~~L~~~tKrlRQa~FK~~yk~Rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (168)
++++..+.+..+.|+++...|.++=+..|. .++.||..+=+..=+=.|+-..- ..--.+|+.+-.+ .++-.|||
T Consensus 105 ~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~I---d~c~~~C~~sC~~--~l~~~vD~ 178 (390)
T 1deq_A 105 NNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDI---DIKIRSCKGSCSR--ALEHKVDL 178 (390)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH---HHHhcccccccch--hhhhhccH
Confidence 345556666777888888888887777777 78888877555443333332211 2223445544444 66777888
Q ss_pred hHHh
Q 036926 140 DEYQ 143 (168)
Q Consensus 140 ~~~~ 143 (168)
+.|.
T Consensus 179 e~ye 182 (390)
T 1deq_A 179 EDYK 182 (390)
T ss_pred HHHH
Confidence 8886
No 342
>3nfi_A DNA-directed RNA polymerase I subunit RPA49; winged helix, transcription, DNA binding, DN protein; HET: MSE PE4; 1.90A {Saccharomyces cerevisiae} PDB: 3nfh_A
Probab=38.21 E-value=19 Score=29.39 Aligned_cols=29 Identities=31% Similarity=0.306 Sum_probs=26.7
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
-|-..+...|+.|+++...+...+|++|-
T Consensus 175 nf~vd~~~La~DLkl~~~~l~~~fr~lGc 203 (237)
T 3nfi_A 175 NFIVEITPLAHELNLKPSKVVSLFRVLGA 203 (237)
T ss_dssp TTEEEHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CCccCHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 46778999999999999999999999995
No 343
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=38.10 E-value=21 Score=24.80 Aligned_cols=31 Identities=13% Similarity=0.137 Sum_probs=22.0
Q ss_pred cHHHHHHHcCCChhHHHHHHHHcCCCCCCch
Q 036926 10 PITKAAKELNVGLTLLKKRCRELNIRRWPHR 40 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR~lGI~RWP~R 40 (168)
++.++|+.||++.+++-+...+|==..|-.|
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r 82 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRR 82 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEe
Confidence 6888899999998888777776543344433
No 344
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=37.98 E-value=17 Score=25.35 Aligned_cols=34 Identities=12% Similarity=-0.043 Sum_probs=18.4
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhh-cHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLM-SLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlk-SL~~li~~l 52 (168)
|+..+++..+|++.||.+ =-|+.+. |.+.++..+
T Consensus 23 G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~ 58 (191)
T 1sgm_A 23 GYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEA 58 (191)
T ss_dssp CTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHH
T ss_pred CccccCHHHHHHHHCCCchhHHHHccccHHHHHHHH
Confidence 555555555555555532 2366677 366665544
No 345
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=37.89 E-value=20 Score=25.88 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=20.7
Q ss_pred hhccCcHHHHHHHcCCChhHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKR 28 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~ 28 (168)
.|-++.+.++|++.|||..+|-+.
T Consensus 29 G~~~~ti~~Ia~~agvs~~t~Y~~ 52 (189)
T 3vp5_A 29 SFHEAKIMHIVKALDIPRGSFYQY 52 (189)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CcccccHHHHHHHhCCChHHHHHH
Confidence 355889999999999999998764
No 346
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=37.86 E-value=20 Score=25.98 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=18.9
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.|||+.+++-+...+|
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~L 83 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRL 83 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4678888888888887777666654
No 347
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=37.85 E-value=48 Score=24.30 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=33.5
Q ss_pred HcCCCCC------CchhhhcHHHHHHHHHHHhhcCCC----CH-HHHHHHHHHHHHHHHHHhhCCC
Q 036926 31 ELNIRRW------PHRKLMSLQTLIKNVQELQTEGEG----SE-ERLREALGILERERKLIEERPD 85 (168)
Q Consensus 31 ~lGI~RW------P~RKlkSL~~li~~l~~~~~~g~~----s~-~~l~~ai~~Lerek~lIee~P~ 85 (168)
.++|.|| |-++++.+|...+.|+...+.... +. +-++.++.-+..-..++...|.
T Consensus 20 s~~i~R~k~~~~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~ 85 (97)
T 4aya_A 20 SLGISRSKTPVDDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK 85 (97)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5677788 777889999999999988773221 22 4566677777766777777664
No 348
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=37.82 E-value=19 Score=25.53 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=16.8
Q ss_pred hhccCcHHHHHHHcCCChhHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr 27 (168)
.|-+..+.++|++.|||..+|-+
T Consensus 35 G~~~~s~~~IA~~aGvs~~tlY~ 57 (212)
T 3loc_A 35 GFHGTRLEQIAELAGVSKTNLLY 57 (212)
T ss_dssp HHHHCCHHHHHHHHTSCHHHHHH
T ss_pred CcccCCHHHHHHHHCcCHHHHhh
Confidence 34467788888888888877754
No 349
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=37.50 E-value=15 Score=27.75 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=26.5
Q ss_pred HHHHHHc----CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHH
Q 036926 12 TKAAKEL----NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNV 52 (168)
Q Consensus 12 ~eAAr~L----gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l 52 (168)
-+||.+| |+..+++..+|++.||.+ ==|+.+.+.+.++..+
T Consensus 52 l~aA~~lf~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~~v 97 (245)
T 3aqt_A 52 ITSARTLMAERGVDNVGIAEITEGANIGTGTFYNYFPDREQLLQAV 97 (245)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHH
T ss_pred HHHHHHHHHhcCcccCcHHHHHHHhCCChHHHHHHcCCHHHHHHHH
Confidence 3455444 777777777777777633 3377777777776654
No 350
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=37.25 E-value=12 Score=27.32 Aligned_cols=42 Identities=12% Similarity=0.087 Sum_probs=27.9
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCC-CCCchhhhcHHHHHHHH
Q 036926 11 ITKAAKEL----NVGLTLLKKRCRELNIR-RWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 11 i~eAAr~L----gVs~T~LKr~CR~lGI~-RWP~RKlkSL~~li~~l 52 (168)
|-+||.+| |+..+++..+|++.||. .=+|+-+.+.+.++..+
T Consensus 17 Il~aA~~l~~e~G~~~~s~~~IA~~agvs~~t~Y~hF~~Ke~Ll~al 63 (198)
T 3cjd_A 17 LIDLAEAQIEAEGLASLRARELARQADCAVGAIYTHFQDLNALTLEV 63 (198)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhcCHHHHHHHhCCCccHHHHHhCCHHHHHHHH
Confidence 34455444 66667777777777763 35688888888887665
No 351
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=37.25 E-value=7.1 Score=31.29 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.+++++|++.|||.+|+-|.-.
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln 28 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALS 28 (333)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 4689999999999999887765
No 352
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=37.10 E-value=19 Score=25.01 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=17.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.|||+.+++-+..++|
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L 78 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRM 78 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHH
Confidence 4567888888888887666655543
No 353
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=36.94 E-value=20 Score=24.95 Aligned_cols=32 Identities=25% Similarity=0.238 Sum_probs=18.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
.+.+.++|++.|||..+| |+-..|.+.++..+
T Consensus 30 ~~ti~~Ia~~agvs~~t~-------------Y~~F~sK~~L~~~~ 61 (196)
T 3col_A 30 GVSTTKVAKRVGIAQSNV-------------YLYFKNKQALIDSV 61 (196)
T ss_dssp GCCHHHHHHHHTSCHHHH-------------HTTCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHH-------------HHHhCCHHHHHHHH
Confidence 455566666666665555 45555555555443
No 354
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=36.80 E-value=29 Score=24.12 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=20.5
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.||++.+++-+...+|
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~L 69 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTL 69 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5788999999999988887776655
No 355
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=36.68 E-value=23 Score=25.27 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=14.8
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-.+.+.++|++.|||..+|-+
T Consensus 28 ~~~~ti~~Ia~~agvs~~t~Y~ 49 (216)
T 3s5r_A 28 IAATTMAEIAASVGVNPAMIHY 49 (216)
T ss_dssp TTTCCHHHHHHTTTCCHHHHHH
T ss_pred cccCCHHHHHHHHCCCHHHHHH
Confidence 4456777777777777777643
No 356
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=36.59 E-value=27 Score=24.88 Aligned_cols=25 Identities=8% Similarity=0.060 Sum_probs=18.3
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
|-.+.+.++|++.|||..+|-+...
T Consensus 35 ~~~~ti~~Ia~~agvs~~t~Y~~F~ 59 (207)
T 2rae_A 35 FDATSVDEVAEASGIARRTLFRYFP 59 (207)
T ss_dssp TTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred cccCCHHHHHHHhCCCcchHhhhCC
Confidence 4467788888888888887776543
No 357
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=36.42 E-value=7.4 Score=31.37 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
.+++++|++.|||.+|+-|.-..
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 57899999999999998776654
No 358
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=36.42 E-value=27 Score=25.17 Aligned_cols=36 Identities=11% Similarity=0.006 Sum_probs=22.8
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQE 54 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l~~ 54 (168)
|-...+.++|++.|||..+| |+-+.+-+.++..+-+
T Consensus 33 ~~~~s~~~IA~~agvs~~t~-------------Y~~F~sKe~L~~~~~~ 68 (221)
T 3c2b_A 33 EKALTTSGLARAANCSKESL-------------YKWFGDRDGLLAAMIT 68 (221)
T ss_dssp GGGCCHHHHHHHHTCCHHHH-------------HHHHSSHHHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHH-------------HHhCCCHHHHHHHHHH
Confidence 33456666666666666665 6667777777776644
No 359
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=36.39 E-value=25 Score=25.35 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=14.3
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-.+.+.++|++.|||..+|-+
T Consensus 41 ~~~~t~~~IA~~agvs~~t~Y~ 62 (214)
T 2zb9_A 41 TAQLTFERVARVSGVSKTTLYK 62 (214)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHH
T ss_pred cccCCHHHHHHHHCCCHHHHHH
Confidence 4456677777777777766643
No 360
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=36.34 E-value=29 Score=26.21 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=18.1
Q ss_pred ccC--cHHHHHHHcCCC-hhHHHHHH
Q 036926 7 FYM--PITKAAKELNVG-LTLLKKRC 29 (168)
Q Consensus 7 F~l--Pi~eAAr~LgVs-~T~LKr~C 29 (168)
.++ .+.|.|+.|||+ .+++.+.-
T Consensus 22 ~g~~ps~~elA~~lgiss~~tv~~~~ 47 (202)
T 1jhf_A 22 TGMPPTRAEIAQRLGFRSPNAAEEHL 47 (202)
T ss_dssp HSSCCCHHHHHHHTTCSSHHHHHHHH
T ss_pred hCCCccHHHHHHHhCCCChHHHHHHH
Confidence 477 789999999998 78776543
No 361
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=36.24 E-value=24 Score=25.20 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=12.5
Q ss_pred hccCcHHHHHHHcCCChhHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLK 26 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LK 26 (168)
|-...+.++|++.|||..+|-
T Consensus 26 ~~~~t~~~IA~~agvs~~tlY 46 (199)
T 2o7t_A 26 HDSLTMENIAEQAGVGVATLY 46 (199)
T ss_dssp GGGCCHHHHHHHHTCCHHHHH
T ss_pred CccCCHHHHHHHhCCCHHHHH
Confidence 345566666666666666653
No 362
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=36.03 E-value=13 Score=26.46 Aligned_cols=41 Identities=17% Similarity=0.095 Sum_probs=29.9
Q ss_pred HHHHHHc----CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHH
Q 036926 12 TKAAKEL----NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNV 52 (168)
Q Consensus 12 ~eAAr~L----gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l 52 (168)
-+||.+| |+..+++..+|++.||.+ =-|+-+.+.+.++..+
T Consensus 37 l~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~ 82 (218)
T 3dcf_A 37 IKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAI 82 (218)
T ss_dssp HHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 4556554 999999999999999954 3466666766666554
No 363
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=35.99 E-value=13 Score=26.55 Aligned_cols=34 Identities=9% Similarity=0.031 Sum_probs=15.8
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l 52 (168)
|+..+++..+|++.||.+ ==|+...+-+.++..+
T Consensus 42 G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 76 (212)
T 3nxc_A 42 GSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSL 76 (212)
T ss_dssp ----CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHH
T ss_pred ChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHH
Confidence 445555555555555522 1255566666665544
No 364
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=35.95 E-value=15 Score=26.23 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=25.7
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCCC-CCchhhhcHHHH
Q 036926 11 ITKAAKEL----NVGLTLLKKRCRELNIRR-WPHRKLMSLQTL 48 (168)
Q Consensus 11 i~eAAr~L----gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~l 48 (168)
|-+||.+| |+..+++..+|++.||.+ =-|+-+.|.+.+
T Consensus 12 Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L 54 (195)
T 2dg7_A 12 LKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKREV 54 (195)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTTGG
T ss_pred HHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHHcCCHHHH
Confidence 34555554 999999999999999954 234444444443
No 365
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=35.94 E-value=7.6 Score=31.21 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.+++++|++.|||.+|+-|.-+
T Consensus 13 ~ti~diA~~agVS~~TVSr~Ln 34 (355)
T 3e3m_A 13 VTMRDVAKAAGVSRMTVSRALK 34 (355)
T ss_dssp ----------------------
T ss_pred CcHHHHHHHhCCCHHHHHHHHC
Confidence 4689999999999998876554
No 366
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=35.91 E-value=20 Score=25.14 Aligned_cols=33 Identities=12% Similarity=-0.012 Sum_probs=18.6
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
-...+.++|++.|||..+| |+.+++-+.++..+
T Consensus 26 ~~~t~~~IA~~agvs~~t~-------------Y~~F~sK~~L~~~~ 58 (199)
T 3qbm_A 26 AGTAISDIMAATGLEKGGI-------------YRHFESKEQLALAA 58 (199)
T ss_dssp TTCCHHHHHHHHTCCHHHH-------------HTTCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhCCCccHH-------------HHhCCCHHHHHHHH
Confidence 3455666666666666555 45555555555443
No 367
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=35.90 E-value=17 Score=25.98 Aligned_cols=34 Identities=3% Similarity=0.120 Sum_probs=15.8
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l 52 (168)
|+.-+++..+|++.||.+ =-|+-+.+.+.++..+
T Consensus 26 G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~ 60 (193)
T 2dg8_A 26 GIARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREA 60 (193)
T ss_dssp CGGGCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHH
T ss_pred ChhhccHHHHHHHhCCCchhhheeCCCHHHHHHHH
Confidence 444444444444444422 1245555555555443
No 368
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=35.90 E-value=17 Score=25.62 Aligned_cols=34 Identities=6% Similarity=-0.017 Sum_probs=21.8
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-.+.+.++|++.|||..+| |+-+.|-+.++..+
T Consensus 29 ~~~~ti~~IA~~agvs~~t~-------------Y~~F~sK~~L~~~~ 62 (204)
T 3eup_A 29 LAGTSLTDLTEATNLTKGSI-------------YGNFENKEAVAIAA 62 (204)
T ss_dssp HHHCCHHHHHHHHTCCHHHH-------------TTTSSSHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCcHHH-------------HHhCCCHHHHHHHH
Confidence 44567777777777777766 55566666665544
No 369
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=35.89 E-value=26 Score=24.87 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=19.1
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
-++.+.++|++.|||..+| |+.+.+.+.++..+
T Consensus 45 ~~~t~~~Ia~~agvs~~t~-------------Y~~F~sK~~L~~~~ 77 (217)
T 3mvp_A 45 FNVTTNEIAKKADVSVGTL-------------YAYFASKEDILTAL 77 (217)
T ss_dssp GGCCHHHHHHHHTSCHHHH-------------HHHCSSHHHHHHHH
T ss_pred cccCHHHHHHHhCCChhHH-------------HHHcCCHHHHHHHH
Confidence 3455555555555555555 55666666666554
No 370
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=35.88 E-value=82 Score=24.12 Aligned_cols=44 Identities=16% Similarity=0.060 Sum_probs=29.6
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCC-CCCchhhhcHHHHHHHHHH
Q 036926 11 ITKAAKEL----NVGLTLLKKRCRELNIR-RWPHRKLMSLQTLIKNVQE 54 (168)
Q Consensus 11 i~eAAr~L----gVs~T~LKr~CR~lGI~-RWP~RKlkSL~~li~~l~~ 54 (168)
|.+||.+| |+..+++.++|+++||. .=-|+-+.+-+.++..+-+
T Consensus 21 Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~~~~ 69 (237)
T 2hxo_A 21 IVGAAVELLDTVGERGLTFRALAERLATGPGAIYWHITGKAELLGAATD 69 (237)
T ss_dssp HHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHHhcCCHHHHHHHHHH
Confidence 34455444 77777777777777773 3458888888888776543
No 371
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=35.75 E-value=24 Score=25.63 Aligned_cols=26 Identities=4% Similarity=0.074 Sum_probs=22.2
Q ss_pred hhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.|-.+.+.++|++.|||..+|-+...
T Consensus 29 G~~~~s~~~IA~~agvs~~t~Y~hF~ 54 (198)
T 3cjd_A 29 GLASLRARELARQADCAVGAIYTHFQ 54 (198)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred ChhhcCHHHHHHHhCCCccHHHHHhC
Confidence 46689999999999999999987643
No 372
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=35.75 E-value=19 Score=25.28 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=17.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.|||+.+++-+...+|
T Consensus 53 ~~t~~eLa~~l~~~~~tvs~~l~~L 77 (127)
T 2frh_A 53 EYYLKDIINHLNYKQPQVVKAVKIL 77 (127)
T ss_dssp EEEHHHHHHHSSSHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3567788888888877766655543
No 373
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=35.73 E-value=26 Score=26.18 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=22.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.+++.+.|+.|||+.+++-+..++|-
T Consensus 57 ~~t~~eLa~~l~is~~tvs~~l~~Le 82 (189)
T 3nqo_A 57 ETTLNNIARKMGTSKQNINRLVANLE 82 (189)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 58899999999999988888877653
No 374
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=35.69 E-value=21 Score=25.04 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=20.2
Q ss_pred hhccCcHHHHHHHcCCChhHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr 27 (168)
.|-...+.++|++.|||..+|-+
T Consensus 28 G~~~~tv~~Ia~~agvs~~t~Y~ 50 (196)
T 3he0_A 28 GFQGLSMQKLANEAGVAAGTIYR 50 (196)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHHT
T ss_pred CcccCCHHHHHHHhCCCcchHHH
Confidence 45679999999999999999875
No 375
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=35.68 E-value=21 Score=25.38 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=18.2
Q ss_pred hhccCcHHHHHHHcCCChhHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKR 28 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~ 28 (168)
.|-.+.+.++|++.|||..+|-+.
T Consensus 42 G~~~~t~~~Ia~~agvs~~t~Y~~ 65 (212)
T 3nxc_A 42 GSQRITTAKLAASVGVSEAALYRH 65 (212)
T ss_dssp ----CCHHHHHHHTTSCHHHHHTT
T ss_pred ChhhcCHHHHHHHhCCChhHHHHH
Confidence 466799999999999999998763
No 376
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=35.64 E-value=24 Score=28.62 Aligned_cols=25 Identities=32% Similarity=0.216 Sum_probs=21.9
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.|.|+.||++.+++-|+..+|
T Consensus 166 ~~s~~eLA~~lglsksTv~r~L~~L 190 (244)
T 2wte_A 166 GTGITELAKMLDKSEKTLINKIAEL 190 (244)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6789999999999999998887755
No 377
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=35.62 E-value=25 Score=23.37 Aligned_cols=25 Identities=8% Similarity=-0.005 Sum_probs=19.2
Q ss_pred cCcHHHH----HHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKA----AKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eA----Ar~LgVs~T~LKr~CR~l 32 (168)
.+.+.+. |+.|||+.+++-+..++|
T Consensus 22 ~~~~~el~~~la~~l~is~~tvs~~l~~L 50 (99)
T 1tbx_A 22 GIATYDLYKKVNAEFPMSTATFYDAKKFL 50 (99)
T ss_dssp TCBHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4667787 888899988887776654
No 378
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=35.56 E-value=20 Score=25.28 Aligned_cols=34 Identities=15% Similarity=-0.031 Sum_probs=16.3
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l 52 (168)
|+..+++..+|++.||.+ =-|+.+.|.+.++..+
T Consensus 28 G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 62 (203)
T 3b81_A 28 GYENTTLAFIINKLGISKGALYHYFSSKEECADAA 62 (203)
T ss_dssp CSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHH
T ss_pred CcccCcHHHHHHHhCCCchhHHHHcCCHHHHHHHH
Confidence 444444444444444421 2255566666665544
No 379
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=35.53 E-value=22 Score=25.14 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=21.3
Q ss_pred hhccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
..=.+...|.|+.||||..++.|--.+|
T Consensus 13 ~~g~vsv~eLA~~l~VS~~TIRrDL~~L 40 (87)
T 2k02_A 13 LQGRMEAKQLSARLQTPQPLIDAMLERM 40 (87)
T ss_dssp HSCSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HcCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 3345788999999999999887765443
No 380
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=35.38 E-value=14 Score=26.07 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=13.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.+++.+.|+.|||+.+++-+...
T Consensus 62 ~~~~~ela~~l~i~~~tvs~~l~ 84 (160)
T 3boq_A 62 GLSMGKLSGALKVTNGNVSGLVN 84 (160)
T ss_dssp CEEHHHHHHHCSSCCSCHHHHHH
T ss_pred CCCHHHHHHHHCCChhhHHHHHH
Confidence 35566667777766655444443
No 381
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=35.23 E-value=22 Score=25.57 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=19.5
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-...+.++|++.|||..+| |+-+.|-+.++..+
T Consensus 29 ~~~~s~~~IA~~agvs~~t~-------------Y~~F~sK~~L~~~v 62 (212)
T 2ras_A 29 GAGLTLSELAARAGISQANL-------------SRYFETREDLMEAI 62 (212)
T ss_dssp SSCCCHHHHHHHHTSCHHHH-------------TTTCSSHHHHHHHH
T ss_pred cccCcHHHHHHHhCCCHHHH-------------HHHcCCHHHHHHHH
Confidence 33455666666666666555 55666666665443
No 382
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=35.14 E-value=4.4 Score=29.47 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=19.2
Q ss_pred cHHHHHHHcCCChhHHHHHHHHcC
Q 036926 10 PITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
+..+.|+.||||.|++.+..++|-
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L~ 60 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYLQ 60 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 477899999999999998888653
No 383
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=35.07 E-value=14 Score=25.94 Aligned_cols=31 Identities=13% Similarity=-0.033 Sum_probs=16.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc---C-CCCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL---N-IRRWP 38 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l---G-I~RWP 38 (168)
.+++.+.|+.|||+.+++-+...+| | |.|-|
T Consensus 57 ~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~ 91 (148)
T 3jw4_A 57 GIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRI 91 (148)
T ss_dssp CCCHHHHHHC------CHHHHHHHHHHTTSBCCC-
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeC
Confidence 5788889999999876666665544 3 55554
No 384
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=34.94 E-value=24 Score=26.54 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=18.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQ 53 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l~ 53 (168)
.+.+.++|+++||+..+| |+-+.+.+.++..+-
T Consensus 22 ~~s~~~IA~~aGvs~~tl-------------Y~hf~~K~~Ll~~~~ 54 (209)
T 3bqy_A 22 TLTMRRLAQAMDVQAGAL-------------YRYFAAKQDLLTAMA 54 (209)
T ss_dssp GCCHHHHHHHHTSCHHHH-------------HHHCSSHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchH-------------HhhcCCHHHHHHHHH
Confidence 455555555555555555 555566666665543
No 385
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=34.91 E-value=24 Score=24.82 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=13.9
Q ss_pred hccCcHHHHHHHcCCChhHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLK 26 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LK 26 (168)
|-...+.++|++.|||..+|-
T Consensus 20 y~~~s~~~Ia~~agvskgtlY 40 (179)
T 2eh3_A 20 YQGTSVEEIVKRANLSKGAFY 40 (179)
T ss_dssp STTCCHHHHHHHHTCCHHHHH
T ss_pred CccCCHHHHHHHhCCCcHHHH
Confidence 445667777777777776663
No 386
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=34.89 E-value=26 Score=25.04 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=19.8
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
-.+.+.++|++.|||..+| |+-+.|-+.++..+
T Consensus 30 ~~~ti~~Ia~~agvs~~t~-------------Y~~F~sK~~L~~~~ 62 (216)
T 3f0c_A 30 CKTTMNEIASDVGMGKASL-------------YYYFPDKETLFEAV 62 (216)
T ss_dssp SSCCHHHHHHHHTCCHHHH-------------HHHCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhCCCHHHH-------------HHHcCCHHHHHHHH
Confidence 3566666777777776666 45555555555443
No 387
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=34.67 E-value=25 Score=28.58 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.0
Q ss_pred cCc-HHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMP-ITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lP-i~eAAr~LgVs~T~LKr~CR~l 32 (168)
-|| ..+.|+++|||.+++.+.-..|
T Consensus 52 ~lPse~~La~~~~vSr~tvr~Al~~L 77 (272)
T 3eet_A 52 RLPSQARIREEYGVSDTVALEARKVL 77 (272)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 464 8899999999999998887654
No 388
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=34.60 E-value=33 Score=23.79 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=19.5
Q ss_pred cCcHHHHHHHc-CCChhHHHHHHHHc
Q 036926 8 YMPITKAAKEL-NVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~L-gVs~T~LKr~CR~l 32 (168)
.+.+.+.|+.| ||+.+++-+..++|
T Consensus 35 ~~~~~eLa~~l~~is~~tvs~~L~~L 60 (112)
T 1z7u_A 35 TKRNGELMRALDGITQRVLTDRLREM 60 (112)
T ss_dssp CBCHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhccCCHHHHHHHHHHH
Confidence 46788999999 99988877766644
No 389
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=34.59 E-value=24 Score=25.02 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=16.0
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-.+.+.++|++.|||..+|-+
T Consensus 26 ~~~~t~~~IA~~agvs~~t~Y~ 47 (195)
T 3frq_A 26 PIEFTLSGVAKEVGLSRAALIQ 47 (195)
T ss_dssp HHHCCHHHHHHHHTCCHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHHH
Confidence 4467778888888888877743
No 390
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=34.59 E-value=33 Score=26.90 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=23.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNI 34 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI 34 (168)
++.+.++|+.||+|.+++.++.|=+.+
T Consensus 52 G~t~eeiA~~lG~s~s~V~~~LrLl~L 78 (178)
T 1r71_A 52 GKKKGDIAKEIGKSPAFITQHVTLLDL 78 (178)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHGGGSC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHcC
Confidence 688999999999999999988776654
No 391
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=34.52 E-value=23 Score=24.86 Aligned_cols=20 Identities=20% Similarity=0.082 Sum_probs=12.5
Q ss_pred ccCcHHHHHHHcCCChhHHH
Q 036926 7 FYMPITKAAKELNVGLTLLK 26 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LK 26 (168)
-.+.+.++|++.|||..+|-
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y 52 (156)
T 3ljl_A 33 DKMSYTTLSQQTGVSRTGIS 52 (156)
T ss_dssp HHCCHHHHHHHHTCCHHHHH
T ss_pred hhcCHHHHHHHHCCCHHHHH
Confidence 34566666666666666663
No 392
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=34.44 E-value=25 Score=26.15 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=26.2
Q ss_pred ccCc--HHHHHHHcCCChhHHHHHH---HHcCCCCCCchhhhcH
Q 036926 7 FYMP--ITKAAKELNVGLTLLKKRC---RELNIRRWPHRKLMSL 45 (168)
Q Consensus 7 F~lP--i~eAAr~LgVs~T~LKr~C---R~lGI~RWP~RKlkSL 45 (168)
+.+| ..+.|..||++..+|-|.- ++-|| .--++++.=+
T Consensus 175 ~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi-~~~~~~i~I~ 217 (237)
T 3fx3_A 175 VTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGV-TVKRNHAEIE 217 (237)
T ss_dssp EECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTE-ECCTTEEEES
T ss_pred EEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCe-EeeCCEEEEc
Confidence 4455 8999999999987766655 45577 5555555433
No 393
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=34.37 E-value=34 Score=25.46 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=23.3
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
|=+..+.+.|++.|+|..++.+++++..
T Consensus 90 f~G~n~~eLArkYgLSer~I~~Ii~~~r 117 (129)
T 1rr7_A 90 FNGRNVSELTTRYGVTFNTVYKAIRRMR 117 (129)
T ss_dssp CCSSCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4467899999999999999999987654
No 394
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=34.28 E-value=28 Score=25.04 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=12.5
Q ss_pred ccCcHHHHHHHcCCChhHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr 27 (168)
-...+.++|++.|||..+|-+
T Consensus 22 ~~~s~~~IA~~Agvs~~t~Y~ 42 (212)
T 3rh2_A 22 RTITTNHIAAHLDISPGNLYY 42 (212)
T ss_dssp GGCCHHHHHHHHTCCHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHH
Confidence 345666666666666666543
No 395
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=34.24 E-value=24 Score=25.37 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=17.3
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 9 MPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
+++.+.|+.|||+.+++-+...+|-
T Consensus 52 ~t~~eLa~~l~~~~~tvs~~v~~Le 76 (147)
T 4b8x_A 52 LPMSKIGERLMVHPTSVTNTVDRLV 76 (147)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5677777777777777666665543
No 396
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=34.08 E-value=28 Score=25.18 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=19.6
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 9 MPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
+++.+.|+.+||+.+++-+...++-
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~Le 77 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVMR 77 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHH
Confidence 6789999999999888777766553
No 397
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=34.07 E-value=27 Score=24.97 Aligned_cols=25 Identities=16% Similarity=0.070 Sum_probs=19.9
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.|||+.+++-+...+|
T Consensus 60 ~~t~~eLa~~l~~~~~tvs~~l~~L 84 (162)
T 3k0l_A 60 NLSNAKLAERSFIKPQSANKILQDL 84 (162)
T ss_dssp TCCHHHHHHHHTSCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5788899999999988777776655
No 398
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=33.88 E-value=29 Score=25.10 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=14.8
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-+..+.++|++.|||..+|-+
T Consensus 30 ~~~ts~~~IA~~aGvsk~tlY~ 51 (211)
T 3bhq_A 30 YDGTSMEEIATKAGASKQTVYK 51 (211)
T ss_dssp STTCCHHHHHHHHTCCHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHHH
Confidence 4456777777777777777644
No 399
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=33.58 E-value=26 Score=25.83 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=20.5
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
++..+.|+.+||+...|.++..+|
T Consensus 29 ~s~~~IA~~~~i~~~~l~kil~~L 52 (143)
T 3t8r_A 29 ISLKSIAEENNLSDLYLEQLVGPL 52 (143)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 688999999999999998887654
No 400
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=33.45 E-value=28 Score=25.28 Aligned_cols=34 Identities=6% Similarity=-0.097 Sum_probs=20.1
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-+..+.++|++.|||..+| |+.++|-+.++..+
T Consensus 29 ~~~~s~~~IA~~aGvskgtl-------------Y~~F~sKe~L~~a~ 62 (210)
T 2wui_A 29 VGTTAMADLADAAGVSRGAV-------------YGHYKNKIEVCLAM 62 (210)
T ss_dssp TTTCCHHHHHHHHTSCHHHH-------------HHHCSSHHHHHHHH
T ss_pred ccccCHHHHHHHhCCCHHHH-------------HHHcCCHHHHHHHH
Confidence 33466666666666666665 45555555555554
No 401
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=33.38 E-value=25 Score=25.36 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=19.3
Q ss_pred CCChhHHHHHHHHcCC-CCCCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNI-RRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI-~RWP~RKlkSL~~li~~l 52 (168)
|+..|++..+|++.|| +.=-|+-+.+-+.++..+
T Consensus 28 G~~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~~~ 62 (210)
T 2xdn_A 28 GVARTTLADIAELAGVTRGAIYWHFNNKAELVQAL 62 (210)
T ss_dssp CSTTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHH
T ss_pred CcccCcHHHHHHHHCCChHHHHHHhCCHHHHHHHH
Confidence 5555555555555555 233466666666666554
No 402
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=33.34 E-value=1.2e+02 Score=21.45 Aligned_cols=25 Identities=8% Similarity=0.025 Sum_probs=19.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.|||+.+++-+...+|
T Consensus 67 ~~t~~eLa~~l~~~~~~vs~~l~~L 91 (161)
T 3e6m_A 67 ELTVGQLATLGVMEQSTTSRTVDQL 91 (161)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5678888888888887777776654
No 403
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=33.14 E-value=25 Score=24.79 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=19.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
.+.+.++|++.|||..+| |+.+.+.+.++..+
T Consensus 40 ~~t~~~Ia~~agvs~~t~-------------Y~~F~~K~~L~~~~ 71 (203)
T 3mnl_A 40 AVQMRAVADRADVAVGTL-------------YRYFPSKVHLLVSA 71 (203)
T ss_dssp HCCHHHHHHHHTCCHHHH-------------HHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHcCCChhHH-------------HHHcCCHHHHHHHH
Confidence 455666666666666655 55566666665554
No 404
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=32.92 E-value=9.2 Score=28.56 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR 30 (168)
-.+..||+.||||.++|-+.-+
T Consensus 13 ~s~s~AA~~L~isq~avS~~i~ 34 (300)
T 3mz1_A 13 GNFTRASASLNMPKATVTNLIQ 34 (300)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 4578999999999987765544
No 405
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=32.88 E-value=1.3e+02 Score=21.08 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=17.0
Q ss_pred hhccCcHHHHHHHcCCChhHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr 27 (168)
.|-++.+.++|++.|||..+|-+
T Consensus 31 G~~~~t~~~Ia~~agvs~~t~Y~ 53 (215)
T 3e7q_A 31 GFQGASVRKICAEAGVSVGLINH 53 (215)
T ss_dssp HHHHCCHHHHHHHHTCCHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHH
Confidence 34467788888888888888744
No 406
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=32.84 E-value=30 Score=24.67 Aligned_cols=24 Identities=13% Similarity=0.047 Sum_probs=21.0
Q ss_pred hhccCcHHHHHHHcCCChhHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKR 28 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~ 28 (168)
.|-.+.+.++|++.|||..+|-+.
T Consensus 26 G~~~~ti~~IA~~agvs~~t~Y~~ 49 (193)
T 2dg8_A 26 GIARVSHRRIAQRAGVPLGSMTYH 49 (193)
T ss_dssp CGGGCCHHHHHHHHTSCTHHHHHH
T ss_pred ChhhccHHHHHHHhCCCchhhhee
Confidence 455899999999999999999874
No 407
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.58 E-value=34 Score=24.79 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=20.6
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-+..+.++|++.|||..+| |+.+.|-+.++..+
T Consensus 29 y~~ts~~~IA~~aGvsk~tl-------------Y~~F~sKe~L~~av 62 (202)
T 2i10_A 29 YEGTSITDLTKALGINPPSL-------------YAAFGSKRDLFEKT 62 (202)
T ss_dssp TTTCCHHHHHHHHTCCHHHH-------------HHHHCSHHHHHHHH
T ss_pred cccCCHHHHHHHhCCChHHH-------------HHHhCCHHHHHHHH
Confidence 44566666666666666666 55566666665543
No 408
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=32.55 E-value=26 Score=25.39 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=18.5
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-+..+.++|++.|||..+| |+-+.|-+.++..+
T Consensus 32 ~~~~s~~~IA~~agvsk~tl-------------Y~yF~sKe~L~~a~ 65 (199)
T 3crj_A 32 YADLTIQRIADEYGKSTAAV-------------HYYYDTKDDLLAAF 65 (199)
T ss_dssp TTTCCHHHHHHHHTSCHHHH-------------HTTCSSHHHHHHHH
T ss_pred cccCCHHHHHHHhCCChhHH-------------hhhcCCHHHHHHHH
Confidence 33455555555555555555 55566666665543
No 409
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=32.49 E-value=31 Score=24.16 Aligned_cols=23 Identities=17% Similarity=0.432 Sum_probs=18.9
Q ss_pred cHHHHHHHc-CCChhHHHHHHHHc
Q 036926 10 PITKAAKEL-NVGLTLLKKRCREL 32 (168)
Q Consensus 10 Pi~eAAr~L-gVs~T~LKr~CR~l 32 (168)
+..|.|+.| ||+.++|-+.-++|
T Consensus 44 ~~~eL~~~l~gis~~~ls~~L~~L 67 (111)
T 3df8_A 44 NFNDIRSSIPGISSTILSRRIKDL 67 (111)
T ss_dssp CHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHccCCCHHHHHHHHHHH
Confidence 488999999 99998888776643
No 410
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=32.28 E-value=30 Score=24.84 Aligned_cols=34 Identities=12% Similarity=0.046 Sum_probs=19.2
Q ss_pred CCChhHHHHHHHHcCC-CCCCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNI-RRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI-~RWP~RKlkSL~~li~~l 52 (168)
|..-|++..+|++.|| +.--|+.+.|-+.++..+
T Consensus 29 G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~av 63 (197)
T 2hyt_A 29 GYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAV 63 (197)
T ss_dssp CTTTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 5555555555555554 334466667766666554
No 411
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=31.97 E-value=9.7 Score=29.82 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHH----HcCC
Q 036926 9 MPITKAAKELNVGLTLLKKRCR----ELNI 34 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR----~lGI 34 (168)
+.+..||++||||.+++-+.-+ ++|+
T Consensus 17 ls~s~AA~~L~isq~avS~~I~~LE~~lg~ 46 (324)
T 1al3_A 17 LNVSSTAEGLYTSQPGISKQVRMLEDELGI 46 (324)
T ss_dssp ------------------------------
T ss_pred cCHHHHHHHhCCCchHHHHHHHHHHHHhCC
Confidence 3788999999999988765554 4564
No 412
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=31.93 E-value=20 Score=25.58 Aligned_cols=23 Identities=26% Similarity=0.132 Sum_probs=19.9
Q ss_pred hhccCcHHHHHHHcCCChhHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr 27 (168)
.|-+..+.++|++.|||..+|-+
T Consensus 24 G~~~~s~~~IA~~aGvs~~tlY~ 46 (178)
T 4hku_A 24 GMEKTTLYDIASNLNVTHAALYK 46 (178)
T ss_dssp CGGGCCHHHHHHHTTSCGGGGGG
T ss_pred CcccccHHHHHHHhCcCHhHHHH
Confidence 45678999999999999988865
No 413
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=31.93 E-value=28 Score=26.15 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=16.6
Q ss_pred hccCcHHHHHHHcCCChhHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKR 28 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~ 28 (168)
|-++.+.++|++.|||..+|-+.
T Consensus 36 ~~~~t~~~IA~~aGvs~~tlY~~ 58 (251)
T 3npi_A 36 FSDAKLEAIAKKSGMSKRMIHYH 58 (251)
T ss_dssp HHHCCHHHHHHHHCCCHHHHHHH
T ss_pred ccccCHHHHHHHHCCCHHHHHHH
Confidence 44677888888888888777443
No 414
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=31.92 E-value=21 Score=27.06 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=21.2
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
++..+.|+.+||+.+.|.|+-.+|
T Consensus 29 ~s~~~IA~~~~is~~~l~kil~~L 52 (162)
T 3k69_A 29 VASRELAQSLHLNPVMIRNILSVL 52 (162)
T ss_dssp BCHHHHHHHHTSCGGGTHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 789999999999999999987653
No 415
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=31.87 E-value=24 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.200 Sum_probs=19.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
.+...+.|+.|||+.+++-+..+.
T Consensus 31 ~~~~~eLa~~l~is~~tvs~hL~~ 54 (118)
T 3f6o_A 31 PATVSELAKPFDMALPSFMKHIHF 54 (118)
T ss_dssp CEEHHHHHTTCCSCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHH
Confidence 357889999999999888776654
No 416
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=31.79 E-value=39 Score=24.35 Aligned_cols=19 Identities=5% Similarity=-0.022 Sum_probs=11.7
Q ss_pred CcHHHHHHHcCCChhHHHH
Q 036926 9 MPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr 27 (168)
..+.++|++.|||..+|-+
T Consensus 32 ~s~~~IA~~agvs~~tiY~ 50 (224)
T 1t33_A 32 ATTRDIAALAGQNIAAITY 50 (224)
T ss_dssp SCHHHHHHHHTSCHHHHHH
T ss_pred ccHHHHHHHhCCCHHHHHH
Confidence 5666666666666666533
No 417
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=31.76 E-value=34 Score=25.23 Aligned_cols=34 Identities=18% Similarity=0.163 Sum_probs=19.8
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQ 53 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l~ 53 (168)
-.+.+.++|++.|||..+| |+.+.+-+.++..+-
T Consensus 59 ~~~t~~~IA~~Agvs~~t~-------------Y~~F~sK~~L~~~v~ 92 (225)
T 2id3_A 59 DALDLGEIARRAGVGKTTV-------------YRRWGTPGGLAADLL 92 (225)
T ss_dssp GGCCHHHHHHHHTCCHHHH-------------HHHHCSHHHHHHHHH
T ss_pred ccCCHHHHHHHHCCCHHHH-------------HHHCCCHHHHHHHHH
Confidence 3456666666666666655 445556666665543
No 418
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=31.76 E-value=1.5e+02 Score=21.59 Aligned_cols=74 Identities=15% Similarity=0.250 Sum_probs=47.4
Q ss_pred HHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHH
Q 036926 15 AKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQELQTEGEGSEERLREALGILERERKLIEERPDLEMEDTTKR 94 (168)
Q Consensus 15 Ar~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l~~~~~~g~~s~~~l~~ai~~Lerek~lIee~P~~~L~~~tKr 94 (168)
.+.|.|-+.++||+..+... |.| -+......++.+...|..++-.++...+.|+.-+..| ++-.+|
T Consensus 3 ~rqLkIktg~vkRL~KE~~~----Y~k--E~~~q~~riek~k~~~~~dey~iKkq~evl~Et~~mi--------pd~~~R 68 (106)
T 1qsd_A 3 PTQLDIKVKALKRLTKEEGY----YQQ--ELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLL--------PTLYEK 68 (106)
T ss_dssp -CHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh--------HHHHHH
Confidence 56788888999999998876 332 3344445555555554325566777777777666665 455667
Q ss_pred HHHHHHHH
Q 036926 95 LRQACFKA 102 (168)
Q Consensus 95 lRQa~FK~ 102 (168)
|+.++-+.
T Consensus 69 l~~a~~~L 76 (106)
T 1qsd_A 69 IREFKEDL 76 (106)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776665
No 419
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=31.67 E-value=30 Score=24.92 Aligned_cols=33 Identities=12% Similarity=0.106 Sum_probs=18.7
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
-+..+.++|++.|||..+| |+-+.|-+.++..+
T Consensus 29 ~~~s~~~IA~~aGvs~~t~-------------Y~~F~sKe~L~~a~ 61 (210)
T 3vib_A 29 ARTSLNEIAQAAGVTRDAL-------------YWHFKNKEDLFDAL 61 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHH-------------HHHCSSHHHHHHHH
T ss_pred ccCCHHHHHHHHCcCHHHH-------------HHHCCCHHHHHHHH
Confidence 3455555555555555555 55666666665554
No 420
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=31.67 E-value=31 Score=25.13 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=13.9
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-...+.++|++.|||..+|-+
T Consensus 26 y~~~s~~~IA~~AGvs~gt~Y~ 47 (206)
T 1vi0_A 26 YHQSQVSKIAKQAGVADGTIYL 47 (206)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHH
T ss_pred cccCCHHHHHHHhCCChhHHHH
Confidence 4456667777777777666643
No 421
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=31.62 E-value=32 Score=24.24 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=18.7
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.|||+.+++-+...+|
T Consensus 55 ~~~~~eLa~~l~~~~~~vs~~l~~L 79 (149)
T 4hbl_A 55 PQTLNSIGRHLDLSSNTLTPMLKRL 79 (149)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5677888888888887777666654
No 422
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=31.15 E-value=25 Score=26.45 Aligned_cols=34 Identities=15% Similarity=0.147 Sum_probs=21.7
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-.+.+.++|+++||+..+| |+.+.+.+.++..+
T Consensus 21 ~~~~s~~~IA~~~Gvs~~sl-------------Y~hF~~K~~Ll~~~ 54 (207)
T 2xpw_A 21 IDGLTTRKLAQKLGIEQPTL-------------YWHVKNKRALLDAL 54 (207)
T ss_dssp HHHCCHHHHHHHHTCCHHHH-------------HHHCCCHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCcchH-------------HHhcCCHHHHHHHH
Confidence 33567777777777777776 55556666665554
No 423
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=31.13 E-value=23 Score=25.46 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=16.1
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.|||+.+++-+...+|
T Consensus 62 ~~t~~eLa~~l~~~~~tvs~~l~~L 86 (168)
T 3u2r_A 62 GMATLQIADRLISRAPDITRLIDRL 86 (168)
T ss_dssp CEEHHHHHHHC---CTHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHH
Confidence 5678888888888877777666655
No 424
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=31.01 E-value=33 Score=24.66 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=17.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
+..+.++|++.|||..+| |+-+.|-+.++..+
T Consensus 34 ~~s~~~IA~~agvs~~tl-------------Y~~F~sKe~L~~~~ 65 (204)
T 2ibd_A 34 ATTVRDIADAAGILSGSL-------------YHHFDSKESMVDEI 65 (204)
T ss_dssp TCCHHHHHHHTTSCHHHH-------------HHHCSCHHHHHHHH
T ss_pred hcCHHHHHHHhCCCchhH-------------HHhcCCHHHHHHHH
Confidence 455555555555555555 55555555555443
No 425
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=30.94 E-value=17 Score=26.00 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=19.9
Q ss_pred hhccCcHHHHHHHcCCChhHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr 27 (168)
.|-..++.++|++.|||..+|-+
T Consensus 30 G~~~~t~~~IA~~agvs~~tlY~ 52 (217)
T 3nrg_A 30 DYDSVSINRITERAGIAKGSFYQ 52 (217)
T ss_dssp CGGGCCHHHHHHHHTCCTTGGGG
T ss_pred CcccCCHHHHHHHhCCcHHHHHH
Confidence 45579999999999999998865
No 426
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=30.92 E-value=36 Score=26.84 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+.+.|.|+.||++.+++-|+.+.|
T Consensus 23 ~~~~~ela~~~gl~~stv~r~l~~L 47 (249)
T 1mkm_A 23 DVSVSEIAEKFNMSVSNAYKYMVVL 47 (249)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4889999999999999998887743
No 427
>4fcy_A Transposase; rnaseh, DDE transposase, DNA binding protein-DNA complex; HET: DNA; 3.71A {Enterobacteria phage MU} PDB: 2ezk_A 2ezl_A 2ezh_A 2ezi_A
Probab=30.85 E-value=30 Score=29.87 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=18.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHc
Q 036926 11 ITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 11 i~eAAr~LgVs~T~LKr~CR~l 32 (168)
+.++|+++|||..||.|.++++
T Consensus 55 ~~~~a~~~gvS~~Tl~rW~~~y 76 (529)
T 4fcy_A 55 FATVAGHYQVSASTLRDKYYQV 76 (529)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 4567999999999999988764
No 428
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=30.85 E-value=33 Score=26.12 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=20.6
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
++..+.|+.+||+...|.++..+|
T Consensus 45 ~s~~eIA~~~~i~~~~l~kil~~L 68 (159)
T 3lwf_A 45 ISLRSIAQDKNLSEHYLEQLIGPL 68 (159)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHH
Confidence 688999999999999998887643
No 429
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=30.82 E-value=35 Score=24.70 Aligned_cols=33 Identities=9% Similarity=0.111 Sum_probs=19.3
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKN 51 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~ 51 (168)
|-+..+.++|++.|||..+| |+.+.|-+.++..
T Consensus 27 ~~~~s~~~IA~~AGvs~gtl-------------Y~~F~sKe~L~~a 59 (203)
T 2np5_A 27 LEGASVREVAKRAGVSIGAV-------------QHHFSTKDEMFAF 59 (203)
T ss_dssp GGGCCHHHHHHHHTCCHHHH-------------HHHCSSHHHHHHH
T ss_pred hhhccHHHHHHHhCCCHHHH-------------HHHcCCHHHHHHH
Confidence 34466666666666666665 4555555555544
No 430
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=30.79 E-value=33 Score=27.39 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=21.7
Q ss_pred hccCcHHHHHHHcCCChhHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRC 29 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~C 29 (168)
-.++++.++|+.+|||.+++-++-
T Consensus 41 ~~gitQ~~lA~~~GiSqs~ISr~l 64 (194)
T 1ic8_A 41 QHNIPQREVVDTTGLNQSHLSQHL 64 (194)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCChHHHHHHH
Confidence 358999999999999999999884
No 431
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=30.67 E-value=34 Score=23.96 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=15.9
Q ss_pred ccCcHHHHHHHcCCChhHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr 27 (168)
-+..+.++|++.|||..+|-+
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~ 51 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHR 51 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHH
Confidence 456788888888888888744
No 432
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=30.47 E-value=21 Score=25.13 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=20.4
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
+...+.|+.|||+.+++.+.-+.|
T Consensus 35 ~~~~eLa~~lgis~stvs~~L~~L 58 (118)
T 2jsc_A 35 CYPGQLAAHLGLTRSNVSNHLSCL 58 (118)
T ss_dssp CSTTTHHHHHSSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 567899999999999998877764
No 433
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=30.43 E-value=11 Score=29.31 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHH----HcCC
Q 036926 9 MPITKAAKELNVGLTLLKKRCR----ELNI 34 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR----~lGI 34 (168)
-.+..||++||||.+++-+.-+ ++|+
T Consensus 16 gs~s~AA~~L~isq~avS~~I~~LE~~lg~ 45 (312)
T 2h9b_A 16 QSFTKAADKLCIAQPPLSRQIQNLEEELGI 45 (312)
T ss_dssp ------------------------------
T ss_pred CCHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence 4578999999999988765544 5564
No 434
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=30.42 E-value=3.2 Score=30.88 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=18.0
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
--.+|..+.|+.||||.|++.+..++
T Consensus 25 ~~~ls~~eLa~~lgvSr~~vr~al~~ 50 (163)
T 2gqq_A 25 DGRISNVELSKRVGLSPTPCLERVRR 50 (163)
T ss_dssp CSSCCTTGGGTSSSCCTTTSSSTHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34567788888888888776555444
No 435
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=30.38 E-value=33 Score=24.71 Aligned_cols=21 Identities=10% Similarity=-0.056 Sum_probs=12.3
Q ss_pred ccCcHHHHHHHcCCChhHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr 27 (168)
-+..+.++|++.|||..+|-+
T Consensus 29 ~~~s~~~Ia~~Agvskgt~Y~ 49 (197)
T 2f07_A 29 DKASISDIVKKAGTAQGTFYL 49 (197)
T ss_dssp TTCCHHHHHHHHTSCHHHHHH
T ss_pred ccCCHHHHHHHhCCCchHHHH
Confidence 345666666666666666544
No 436
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=30.38 E-value=39 Score=24.19 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=20.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+.+.+.|+.++++.|+|.|...+|
T Consensus 36 ~~s~~eLa~~l~l~~stLsR~l~rL 60 (96)
T 2obp_A 36 PWSLPKIAKRAQLPMSVLRRVLTQL 60 (96)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCchhhHHHHHHHH
Confidence 4688899999999999998887765
No 437
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=30.36 E-value=38 Score=24.49 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=18.1
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 MPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.++.+.|+.|||+.+++-+...+|
T Consensus 47 ~~~~eLa~~l~~~~~tvs~~v~~L 70 (151)
T 4aik_A 47 QSQIQLAKAIGIEQPSLVRTLDQL 70 (151)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHCcCHHHHHHHHHHH
Confidence 456788888888887777766655
No 438
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=30.34 E-value=35 Score=24.89 Aligned_cols=34 Identities=9% Similarity=-0.039 Sum_probs=15.7
Q ss_pred CCChhHHHHHHHHcCCC-CCCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIR-RWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~-RWP~RKlkSL~~li~~l 52 (168)
|+..+++..+|++.||. .=-|+.+.+-+.++..+
T Consensus 22 G~~~~t~~~IA~~Agvs~~t~Y~~F~sK~~L~~~~ 56 (228)
T 3nnr_A 22 GERNITTNHIAAHLAISPGNLYYHFRNKSDIIYEI 56 (228)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred ChhhcCHHHHHHHhCCCCccchhcCCCHHHHHHHH
Confidence 44444444444444442 12245555556555544
No 439
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=30.29 E-value=31 Score=25.40 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=15.3
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-.+.+.++|++.|||..+|-+
T Consensus 48 ~~~~s~~~IA~~aGvs~~tlY~ 69 (226)
T 2pz9_A 48 IAGARVDRIAKQARTSKERVYA 69 (226)
T ss_dssp HHHCCHHHHHHHTTSCHHHHHH
T ss_pred cccCcHHHHHHHHCCChHHHHH
Confidence 3457777777777777777743
No 440
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=30.26 E-value=35 Score=19.47 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=17.6
Q ss_pred cHHHHHHHcCCChhHHHHHHHHcCC.
Q 036926 10 PITKAAKELNVGLTLLKKRCRELNI. 34 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR~lGI. 34 (168)
+|..+|+.|.+ +.+|+..|++||
T Consensus 3 yIp~IAe~M~~--~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 3 YITTIAGVMTL--SQVKGFVRKNGVx 26 (26)
T ss_pred chhHHHHHHhH--HHHHHHHHHcCC.
Confidence 45677887754 678999999996
No 441
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=30.19 E-value=25 Score=26.49 Aligned_cols=24 Identities=21% Similarity=-0.009 Sum_probs=20.4
Q ss_pred hhccCcHHHHHHHcCCChhHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKR 28 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~ 28 (168)
.|-.+.+.++|+++|||..+|.+.
T Consensus 42 G~~~~s~~~IA~~aGvs~~tlY~~ 65 (211)
T 3fiw_A 42 GLDGVSTRRLAKRLGVEQPSLYWY 65 (211)
T ss_dssp CGGGCCHHHHHHHHTSCTHHHHTT
T ss_pred CcccCCHHHHHHHhCCChhHHHHH
Confidence 355699999999999999999763
No 442
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=30.12 E-value=33 Score=24.56 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=14.3
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-...+.++|++.|||..+|-+
T Consensus 27 ~~~~t~~~Ia~~Agvs~gt~Y~ 48 (204)
T 3anp_C 27 FQETTATEIAKAAHVSRGTFFN 48 (204)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHH
T ss_pred cccccHHHHHHHcCCchHHHHH
Confidence 3456677777777777766644
No 443
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=30.12 E-value=37 Score=24.90 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=19.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+.+.|.|+.|||+.++|-++.++|
T Consensus 37 ~~~~~eLa~~lgis~~tls~~L~~L 61 (146)
T 2f2e_A 37 LTRFGEFQKSLGLAKNILAARLRNL 61 (146)
T ss_dssp CCSHHHHHHHHCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 4678899999999998887776643
No 444
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=30.09 E-value=57 Score=25.87 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=21.9
Q ss_pred CCChhHHHHHHHHcCCC-CCCchhhhcHHHHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIR-RWPHRKLMSLQTLIKNVQEL 55 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~-RWP~RKlkSL~~li~~l~~~ 55 (168)
|+..+++.++|+++||. .==|+-+.+.+.++..+-+.
T Consensus 44 G~~~~Smr~IA~~aGVs~~tlY~hF~~K~~Ll~av~~~ 81 (267)
T 2y2z_A 44 GVEAASMRRVAAELGAGTMSLYYYVPTKEDLVELMVDE 81 (267)
T ss_dssp CTTTCCHHHHHHHHTCCHHHHHTTCCSHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555542 12277788888887776543
No 445
>3onq_A Regulator of polyketide synthase expression; structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Bifidobacterium adolescentis}
Probab=30.00 E-value=31 Score=28.12 Aligned_cols=29 Identities=31% Similarity=0.440 Sum_probs=22.8
Q ss_pred hhhhhc--cCcHHHHHHHcCCChhHHHHHHH
Q 036926 2 TISQYF--YMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 2 ~l~~yF--~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.|..|| +..+.++|+.|+|...||+-+-+
T Consensus 201 TL~~yl~~~~~~~~tA~~L~iHrNTl~yRL~ 231 (262)
T 3onq_A 201 TVSTFLKYGSSLENTAKELNVHPNTVRYRLK 231 (262)
T ss_dssp HHHHHHHTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHH
Confidence 466777 47899999999999988765543
No 446
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=29.88 E-value=34 Score=25.18 Aligned_cols=25 Identities=8% Similarity=-0.024 Sum_probs=16.3
Q ss_pred cCcHHHHHHHcCC-ChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNV-GLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgV-s~T~LKr~CR~l 32 (168)
+.++.++|+..|| |.++|-+.+.++
T Consensus 28 G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 28 GESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp TCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 5666677777777 666666665553
No 447
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=29.87 E-value=38 Score=24.92 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=20.4
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-.+.+.++|++.|||..+| |+.+.+.+.++..+
T Consensus 46 ~~~~t~~~IA~~aGvs~~tl-------------Y~~F~sK~~Ll~a~ 79 (217)
T 3hta_A 46 IAGLSHRTVAAEADVPLGST-------------TYHFATLDDLMVAA 79 (217)
T ss_dssp GGGCCHHHHHHHHTCCHHHH-------------HHHCSSHHHHHHHH
T ss_pred cccCCHHHHHHHcCCCcchh-------------hhcCCCHHHHHHHH
Confidence 34566666666666666666 45555656665554
No 448
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=29.82 E-value=1.9 Score=31.07 Aligned_cols=26 Identities=19% Similarity=0.032 Sum_probs=22.0
Q ss_pred hhhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 4 SQYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 4 ~~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
++ -+|.+.+.|+.+|||.+++-++.+
T Consensus 2 R~-~glTQ~eLA~~~Gvs~~~is~~E~ 27 (122)
T 1nr3_A 2 RE-RGWSQKKIARELKTTRQNVSAIER 27 (122)
T ss_dssp CC-CSCSSCSTHHHHHHCCSSSCCHHH
T ss_pred cc-cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 44 689999999999999998877655
No 449
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=29.79 E-value=35 Score=25.04 Aligned_cols=21 Identities=19% Similarity=0.126 Sum_probs=12.8
Q ss_pred hccCcHHHHHHHcCCChhHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLK 26 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LK 26 (168)
|-.+.+.++|++.|||..+|-
T Consensus 53 ~~~~t~~~IA~~AGvs~~tlY 73 (221)
T 3g7r_A 53 IHSVGIDRITAEAQVTRATLY 73 (221)
T ss_dssp STTSCHHHHHHHHTCCHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHH
Confidence 335666666666666666663
No 450
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=29.77 E-value=37 Score=26.34 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.8
Q ss_pred hhccCcHHHHHHHcCCChhHHHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~CR 30 (168)
.|-.+.+.++|+++||+..+|.+...
T Consensus 23 G~~~~S~r~IA~~aGvs~~tlY~hF~ 48 (234)
T 2opt_A 23 GLDALSMRRLAQELKTGHASLYAHVG 48 (234)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHHC
T ss_pred CccccCHHHHHHHHCCChhHHHHHcC
Confidence 35578999999999999999887643
No 451
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=29.59 E-value=28 Score=26.09 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=20.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQE 54 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l~~ 54 (168)
.+.+.++|+++|||..+| |+-+.+.+.++..+-+
T Consensus 29 ~~s~~~IA~~aGvs~~tl-------------Y~hF~~K~~Ll~~~~~ 62 (213)
T 2g7g_A 29 DFRMPDLARHLNVQVSSI-------------YHHAKGRAAVVELVRH 62 (213)
T ss_dssp SCCHHHHHHHTTSCHHHH-------------HTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHhHH-------------HHHcCCHHHHHHHHHH
Confidence 445555555555555555 5666666777666533
No 452
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=29.52 E-value=36 Score=24.83 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=16.0
Q ss_pred hhccCcHHHHHHHcCCChhHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr 27 (168)
.|-...+.++|++.|||..+|-+
T Consensus 41 G~~~~s~~~IA~~aGvskgtlY~ 63 (214)
T 2oer_A 41 GAQRFTTARVAERAGVSIGSLYQ 63 (214)
T ss_dssp --CCCCHHHHHHHHTCCHHHHHH
T ss_pred CcccccHHHHHHHhCCCCchHHH
Confidence 34567888888888888877754
No 453
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=29.47 E-value=20 Score=26.67 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=17.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
.+.+.++|++.|||..+| |+-+.+.+.++..+
T Consensus 63 ~~tv~~IA~~AGvs~~t~-------------Y~~F~sKe~Ll~~~ 94 (229)
T 3bni_A 63 ALSTRAVALRADVPIGSV-------------YRFFGNKRQMADAL 94 (229)
T ss_dssp TCCHHHHHHHHTCCHHHH-------------HHHCSSHHHHHHHH
T ss_pred hccHHHHHHHHCCCchhH-------------HHHcCCHHHHHHHH
Confidence 355555555555555555 55566666665554
No 454
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=29.46 E-value=18 Score=27.24 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=26.6
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHHHHH
Q 036926 11 ITKAAKEL----NVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNVQEL 55 (168)
Q Consensus 11 i~eAAr~L----gVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l~~~ 55 (168)
|.+||.+| |+.-+++.++|+++||. -.++-+-..+.+++
T Consensus 7 Il~aA~~l~~~~G~~~~s~~~IA~~aGvs------~~tlY~hf~~K~~L 49 (209)
T 3bqy_A 7 TVQTALDLLNESGLDTLTMRRLAQAMDVQ------AGALYRYFAAKQDL 49 (209)
T ss_dssp HHHHHHHHHHHHCGGGCCHHHHHHHHTSC------HHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHhCCC------cchHHhhcCCHHHH
Confidence 34555554 99999999999999994 35555544444443
No 455
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=29.29 E-value=30 Score=27.66 Aligned_cols=32 Identities=3% Similarity=0.025 Sum_probs=25.6
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHH---cC-CCCCCc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRE---LN-IRRWPH 39 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~---lG-I~RWP~ 39 (168)
.+.+.|+|+.+|++.+++-|+.+. .| |.+-|.
T Consensus 21 ~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~ 56 (260)
T 3r4k_A 21 EIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEG 56 (260)
T ss_dssp EEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCC
Confidence 478999999999999999999884 45 455553
No 456
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=29.27 E-value=30 Score=24.96 Aligned_cols=34 Identities=6% Similarity=0.083 Sum_probs=18.8
Q ss_pred hccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
|-+..+.++|++.|||..+| |+-++|-+.++..+
T Consensus 30 y~~ts~~~IA~~agvs~gtl-------------Y~yF~sKe~L~~~v 63 (205)
T 1rkt_A 30 FELTTMKDVVEESGFSRGGV-------------YLYFSSTEEMFRRI 63 (205)
T ss_dssp STTCCHHHHHHHHTSCHHHH-------------HTTCSCHHHHHHHH
T ss_pred cccCCHHHHHHHHCCCcchh-------------hhhCCCHHHHHHHH
Confidence 33455666666666666555 55555555555443
No 457
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=29.07 E-value=33 Score=24.71 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=20.1
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
-...+.++|++.|||..+| |+.+.|-+.++..+
T Consensus 28 ~~~s~~~IA~~aGvsk~tl-------------Y~~F~sKe~L~~a~ 60 (203)
T 3cdl_A 28 EITSMDRIAARAEVSKRTV-------------YNHFPSKEELFAEM 60 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHH-------------HTTSSSHHHHHHHH
T ss_pred hhcCHHHHHHHhCCCHHHH-------------HHHCCCHHHHHHHH
Confidence 3456666666666666665 55556666665554
No 458
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=28.83 E-value=25 Score=24.58 Aligned_cols=34 Identities=6% Similarity=-0.121 Sum_probs=20.2
Q ss_pred CCChhHHHHHHHHcCC-CCCCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNI-RRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI-~RWP~RKlkSL~~li~~l 52 (168)
|+.-+++..+|++.|| +.=-|+.+.|-+.++..+
T Consensus 24 G~~~~s~~~IA~~agvs~~tly~~F~sK~~L~~a~ 58 (180)
T 2fd5_A 24 GAVEPSVGEVMGAAGLTVGGFYAHFQSKDALMLEA 58 (180)
T ss_dssp TTTSCCHHHHHHHTTCCGGGGGGTCSCHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCccHHHHHCCCHHHHHHHH
Confidence 5555555555555555 223477777777777654
No 459
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=28.83 E-value=36 Score=24.42 Aligned_cols=32 Identities=9% Similarity=0.040 Sum_probs=17.5
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKN 51 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~ 51 (168)
-+..+.++|++.|||..+| |+-++|-+.++..
T Consensus 29 ~~~s~~~IA~~aGvs~gtl-------------Y~yF~sKe~L~~a 60 (194)
T 2nx4_A 29 EAANMRDIATEAGYTNGAL-------------SHYFAGKDEILRT 60 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHH-------------HHHCSSHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcchH-------------HHhCcCHHHHHHH
Confidence 3455555555555555555 5555555555443
No 460
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=28.75 E-value=32 Score=23.19 Aligned_cols=33 Identities=21% Similarity=0.474 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhCCC---C------CCcHHHHHHHHHHHH
Q 036926 69 ALGILERERKLIEERPD---L------EMEDTTKRLRQACFK 101 (168)
Q Consensus 69 ai~~Lerek~lIee~P~---~------~L~~~tKrlRQa~FK 101 (168)
-+++|-++|+.+...|+ + -|++++-|+|+..|.
T Consensus 6 YL~qLlkdkk~l~~~Pn~~~iF~H~eRLldEEI~rVR~~Lfq 47 (56)
T 4dnn_A 6 YLMQLMNDKKLMSSLPNFSGIFNHLERLLDEEISRVRKDMYN 47 (56)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 36677888888888887 2 479999999999996
No 461
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=28.75 E-value=39 Score=26.30 Aligned_cols=33 Identities=9% Similarity=0.101 Sum_probs=24.7
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc---C-CCCCCch
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL---N-IRRWPHR 40 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l---G-I~RWP~R 40 (168)
.+.+.+.|+.|||+.+++-+..++| | |.|=||+
T Consensus 20 ~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~~ 56 (214)
T 3hrs_A 20 KITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKA 56 (214)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred CcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecCC
Confidence 4689999999999998877776655 4 4555554
No 462
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=28.73 E-value=41 Score=25.29 Aligned_cols=37 Identities=32% Similarity=0.400 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCC
Q 036926 49 IKNVQELQTEGEGSEERLREALGILERERKLIEERPD 85 (168)
Q Consensus 49 i~~l~~~~~~g~~s~~~l~~ai~~Lerek~lIee~P~ 85 (168)
+.+|+++..+...-+.++..+.+.|+...+..+.+||
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPD 70 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPD 70 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4445555443333456777888999999999999998
No 463
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=28.73 E-value=1.7e+02 Score=21.41 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=12.7
Q ss_pred hccCcHHHHHHHcCCChhHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLK 26 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LK 26 (168)
|-.+.+.++|++.|||..+|-
T Consensus 62 ~~~~t~~~IA~~aGvs~~tlY 82 (236)
T 3q0w_A 62 LADISVDDLAKGAGISRPTFY 82 (236)
T ss_dssp GGGCCHHHHHHHHTCCHHHHH
T ss_pred cccCCHHHHHHHhCCcHHHHH
Confidence 345666666666666666663
No 464
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=28.71 E-value=31 Score=25.72 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=21.4
Q ss_pred CCChhHHHHHHHHcCCC-CCCchhhhcHHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIR-RWPHRKLMSLQTLIKNVQ 53 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~-RWP~RKlkSL~~li~~l~ 53 (168)
|+..+++..+|++.||. .=.|+-+.+.+.++..+-
T Consensus 33 G~~~~s~~~IA~~agvs~~t~Y~~F~~K~~L~~a~~ 68 (216)
T 2oi8_A 33 GASALSLNAIAKRMGMSGPALYRYFDGRDELITELI 68 (216)
T ss_dssp CTTSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHH
T ss_pred CcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 55555555555555552 234777888877776653
No 465
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=28.71 E-value=40 Score=24.95 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=12.4
Q ss_pred ccCcHHHHHHHcCCChhHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr 27 (168)
-.+.+.++|++.|||..+|-+
T Consensus 58 ~~~tv~~IA~~AGvs~~tlY~ 78 (214)
T 2guh_A 58 REITLKDIAEDAGVSAPLIIK 78 (214)
T ss_dssp GGCCHHHHHHHHTSCHHHHHH
T ss_pred hhcCHHHHHHHhCCCHHHHHH
Confidence 345666666666666666543
No 466
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=28.71 E-value=32 Score=24.91 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=12.0
Q ss_pred hccCcHHHHHHHcCCChhHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLK 26 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LK 26 (168)
|-+..+.++|++.|||..+|-
T Consensus 30 ~~~~s~~~IA~~aGvsk~tlY 50 (200)
T 2hyj_A 30 LDGITIGRLAEELEMSKSGVH 50 (200)
T ss_dssp GGGCCHHHHHHHHTCCHHHHH
T ss_pred cccCCHHHHHHHhCCChHHHH
Confidence 344556666666666665553
No 467
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=28.46 E-value=22 Score=25.41 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=27.1
Q ss_pred cCCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHHHH
Q 036926 18 LNVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNVQE 54 (168)
Q Consensus 18 LgVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l~~ 54 (168)
-|...++++.+|++.||.| ==|+-..+-+.++..+-+
T Consensus 29 ~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 66 (195)
T 2iu5_A 29 NAYHQISVSDIMQTAKIRRQTFYNYFQNQEELLSWIFE 66 (195)
T ss_dssp SCGGGCCHHHHHHHHTSCGGGGGGTCSSHHHHHHHHHH
T ss_pred CCCCeeCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 3777788888888888743 448888888888776643
No 468
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=28.38 E-value=1.5e+02 Score=20.70 Aligned_cols=26 Identities=8% Similarity=0.012 Sum_probs=20.6
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
.+++.+.|+.|||+.+++-+...+|=
T Consensus 64 ~~t~~eLa~~l~~~~~tvs~~l~~Le 89 (159)
T 3s2w_A 64 GINQESLSDYLKIDKGTTARAIQKLV 89 (159)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56788999999999888877766553
No 469
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=28.35 E-value=36 Score=28.40 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=22.6
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
=.++..|.|+.+|+|.+++.++.++|
T Consensus 32 ~~~sr~~la~~~gls~~tv~~~v~~L 57 (380)
T 2hoe_A 32 SPVSRVELAEELGLTKTTVGEIAKIF 57 (380)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 35788999999999999999998865
No 470
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=28.21 E-value=1.8e+02 Score=21.32 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=20.4
Q ss_pred HHHHHHHc----CCChhHHHHHHHHcCCC
Q 036926 11 ITKAAKEL----NVGLTLLKKRCRELNIR 35 (168)
Q Consensus 11 i~eAAr~L----gVs~T~LKr~CR~lGI~ 35 (168)
|-+||.+| |+..+++..+|++.||.
T Consensus 48 Il~aA~~l~~~~G~~~~tv~~IA~~AGvs 76 (229)
T 3bni_A 48 ILDACADLLDEVGYDALSTRAVALRADVP 76 (229)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcChhhccHHHHHHHHCCC
Confidence 44566554 99999999999999994
No 471
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=28.18 E-value=25 Score=25.24 Aligned_cols=35 Identities=9% Similarity=0.036 Sum_probs=24.7
Q ss_pred cCCChhHHHHHHHHcCCC-CCCchhhhcHHHHHHHH
Q 036926 18 LNVGLTLLKKRCRELNIR-RWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 18 LgVs~T~LKr~CR~lGI~-RWP~RKlkSL~~li~~l 52 (168)
-|+.-|++..+|++.||. .=-|+-..|-+.++..+
T Consensus 30 ~G~~~~s~~~Ia~~agvs~~t~Y~yF~sKe~L~~~~ 65 (203)
T 3ccy_A 30 QGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDM 65 (203)
T ss_dssp TCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHH
T ss_pred cCcccCCHHHHHHHhCCCcCeeeeeeCCHHHHHHHH
Confidence 377777777778877773 45577777777776654
No 472
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=28.18 E-value=36 Score=26.79 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=22.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+.+.|.|+.+|++.+++-|+.+.|
T Consensus 21 ~~s~~ela~~~gl~~stv~r~l~~L 45 (241)
T 2xrn_A 21 GLSLAAIAQLVGLPRSTVQRIINAL 45 (241)
T ss_dssp CEEHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4789999999999999999998854
No 473
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=28.16 E-value=33 Score=26.68 Aligned_cols=37 Identities=11% Similarity=0.061 Sum_probs=20.3
Q ss_pred CCChhHHHHHHHHcCCC-CCCchhhhcHHHHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIR-RWPHRKLMSLQTLIKNVQEL 55 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~-RWP~RKlkSL~~li~~l~~~ 55 (168)
|+..+++.++|+++||. .=-|+-+.+.+.++..+-+.
T Consensus 36 G~~~~S~~~IA~~aGvs~~tlY~hF~sK~~Ll~av~~~ 73 (243)
T 2g7l_A 36 GLEKVTMRRLAQELDTGPASLYVYVANTAELHAAVLDA 73 (243)
T ss_dssp CSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHHHH
T ss_pred CchhcCHHHHHHHHCCChhHHHHHcCCHHHHHHHHHHH
Confidence 44444455555555542 12366777777777666443
No 474
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=28.11 E-value=12 Score=29.07 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR 30 (168)
-.+..||++||||.++|-+.-+
T Consensus 29 gs~t~AA~~L~isq~avS~~I~ 50 (315)
T 1uth_A 29 RSVSTAGEKLGLTQPAVSNSLK 50 (315)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 4678999999999988766554
No 475
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=28.05 E-value=40 Score=24.60 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=20.0
Q ss_pred cHHHHHHHcCCChhHHHHHHHHc
Q 036926 10 PITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 10 Pi~eAAr~LgVs~T~LKr~CR~l 32 (168)
++.+.|+.+||+...|.|+..+|
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L 47 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLL 47 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 78999999999999999887654
No 476
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=27.98 E-value=19 Score=26.07 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=19.4
Q ss_pred hhccCcHHHHHHHcCCChhHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKR 28 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~ 28 (168)
..-.+.+..+|+.+||..|++-|.
T Consensus 20 ~la~~gq~~vA~~iGV~~StISR~ 43 (97)
T 1xwr_A 20 KIAMLGTEKTAEAVGVDKSQISRW 43 (97)
T ss_dssp HHHHHCHHHHHHHHTCCTTTHHHH
T ss_pred HHHHHhHHHHHHHhCCCHHHHHHH
Confidence 444677899999999999988763
No 477
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=27.94 E-value=37 Score=28.18 Aligned_cols=28 Identities=7% Similarity=0.217 Sum_probs=22.2
Q ss_pred cCcHHHHHHHcCCChhHHHHHHH---HcCCC
Q 036926 8 YMPITKAAKELNVGLTLLKKRCR---ELNIR 35 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR---~lGI~ 35 (168)
.++..+.|++||||.+++.|.-. +.|+.
T Consensus 19 ~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~ 49 (321)
T 1bia_A 19 FHSGEQLGETLGMSRAAINKHIQTLRDWGVD 49 (321)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHHTTCC
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHhCCCc
Confidence 47899999999999999877654 45543
No 478
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=27.92 E-value=40 Score=23.65 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=18.3
Q ss_pred CcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
.++.++|++.|||..+| |+.+.|-+.++..+
T Consensus 29 ~t~~~IA~~aGvs~~tl-------------y~~F~sK~~L~~~~ 59 (190)
T 3jsj_A 29 IGVEALCKAAGVSKRSM-------------YQLFESKDELLAAS 59 (190)
T ss_dssp CCHHHHHHHHTCCHHHH-------------HHHCSCHHHHHHHH
T ss_pred ccHHHHHHHhCCCHHHH-------------HHHcCCHHHHHHHH
Confidence 55555555555555555 55666666666554
No 479
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=27.82 E-value=40 Score=26.83 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.6
Q ss_pred C-cHHHHHHHcCCChhHHHHHHHHc
Q 036926 9 M-PITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 9 l-Pi~eAAr~LgVs~T~LKr~CR~l 32 (168)
| +..+.|+.+|||.+++.+.-.+|
T Consensus 36 lPse~~La~~~~vSr~tvr~Al~~L 60 (248)
T 3f8m_A 36 FPAEREIAEQFEVARETVRQALREL 60 (248)
T ss_dssp CCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5 47899999999999999887765
No 480
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=27.72 E-value=41 Score=26.66 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=21.3
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRE 31 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~ 31 (168)
.+.+.|+|+.+|++.+++-|+.+.
T Consensus 29 ~~~~~eia~~~gl~~stv~r~l~~ 52 (257)
T 2g7u_A 29 NPTLAELATEAGLSRPAVRRILLT 52 (257)
T ss_dssp SCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478999999999999999998873
No 481
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70, PSI-2, prote structure initiative; 2.40A {Homo sapiens} PDB: 2lmg_A
Probab=27.68 E-value=1.6e+02 Score=20.52 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=38.7
Q ss_pred hcHHHHHHHHHHHhhc----CCCCHHHHHHHHHHHHHHHHHHhhCCCC---CCcHHHHHHHHHHHHHh
Q 036926 43 MSLQTLIKNVQELQTE----GEGSEERLREALGILERERKLIEERPDL---EMEDTTKRLRQACFKAN 103 (168)
Q Consensus 43 kSL~~li~~l~~~~~~----g~~s~~~l~~ai~~Lerek~lIee~P~~---~L~~~tKrlRQa~FK~~ 103 (168)
..|+.+|-+++..... ..-+.+........+..-+..|..+++. ++...++.|.+.+.+.-
T Consensus 12 N~lEs~iy~~e~~l~e~~~~~kl~~eek~~i~~~i~e~~~wL~~~~~a~~e~i~~k~~eL~~~~~~i~ 79 (113)
T 3lof_A 12 NALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKDEFEHKRKELEQVCNPII 79 (113)
T ss_dssp HHHHHHHHHHHHHHTCGGGBTTBCHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHH
Confidence 3556667777665542 2234444445555666667777777643 56677888999988864
No 482
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=27.66 E-value=37 Score=26.43 Aligned_cols=26 Identities=12% Similarity=0.079 Sum_probs=19.2
Q ss_pred CcHHHHHHHcCCChhHH----HHHHHHcCC
Q 036926 9 MPITKAAKELNVGLTLL----KKRCRELNI 34 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~L----Kr~CR~lGI 34 (168)
-.+..||+.||||.+++ +++-..+|+
T Consensus 35 gs~~~aa~~l~~s~~~~s~~i~~le~~lg~ 64 (265)
T 1b9m_A 35 GSISQGAKDAGISYKSAWDAINEMNQLSEH 64 (265)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHhCC
Confidence 35788999999998774 455556675
No 483
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=27.66 E-value=43 Score=27.93 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=23.1
Q ss_pred hhccCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
..=.++..|.|+.+|+|.+++.++.++|
T Consensus 27 ~~~~~sr~~la~~~~ls~~tv~~~v~~L 54 (406)
T 1z6r_A 27 QLGPVSRIDLSRLAQLAPASITKIVHEM 54 (406)
T ss_dssp SSCSCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3346788999999999999999888765
No 484
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=27.53 E-value=39 Score=24.27 Aligned_cols=19 Identities=11% Similarity=-0.004 Sum_probs=11.0
Q ss_pred cCcHHHHHHHcCCChhHHH
Q 036926 8 YMPITKAAKELNVGLTLLK 26 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LK 26 (168)
...+.++|++.|||..+|-
T Consensus 27 ~ts~~~IA~~aGvs~gtlY 45 (197)
T 2gen_A 27 ATTIEMIRDRSGASIGSLY 45 (197)
T ss_dssp TCCHHHHHHHHCCCHHHHH
T ss_pred cCCHHHHHHHHCCChHHHH
Confidence 4555666666666665553
No 485
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=27.37 E-value=41 Score=24.91 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=18.8
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
.+.+.++|++.|||..+| |+.+.+.+.++..+
T Consensus 33 ~~tv~~IA~~agvs~~t~-------------Y~~F~sK~~Ll~~~ 64 (231)
T 2qib_A 33 EVSIDEIASAAGISRPLV-------------YHYFPGKLSLYEAA 64 (231)
T ss_dssp GCCHHHHHHHHTSCHHHH-------------HHHCSSHHHHHHHH
T ss_pred hcCHHHHHHHhCCCHHHH-------------HHHCCCHHHHHHHH
Confidence 455555566666655555 55566666666554
No 486
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=27.36 E-value=38 Score=26.17 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=17.6
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l 52 (168)
|+..+++.++|+++||.+ =-|+-+.+-+.++..+
T Consensus 46 G~~~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll~a~ 80 (241)
T 2hxi_A 46 DAETFSVRKLAASLGTDSSSLYRHFRNKTELLRAV 80 (241)
T ss_dssp SCCCCCHHHHHHHTTSCHHHHHHHTSSHHHHHHHH
T ss_pred CcccCCHHHHHHHhCcCHHHHHHHcCCHHHHHHHH
Confidence 444455555555555421 2255666666666554
No 487
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=27.31 E-value=26 Score=26.34 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=20.2
Q ss_pred hhccCcHHHHHHHcCCChhHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr 27 (168)
.|-.+.+.++|++.|||..+|-+
T Consensus 63 G~~~~t~~~IA~~aGvs~~t~Y~ 85 (245)
T 3aqt_A 63 GVDNVGIAEITEGANIGTGTFYN 85 (245)
T ss_dssp CGGGCCHHHHHHHTTSCGGGGGG
T ss_pred CcccCcHHHHHHHhCCChHHHHH
Confidence 45689999999999999999875
No 488
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=27.31 E-value=41 Score=24.51 Aligned_cols=32 Identities=25% Similarity=0.239 Sum_probs=19.0
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHHH
Q 036926 8 YMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKNV 52 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~l 52 (168)
...+.++|++.|||..+| ||-+.|-+.++..+
T Consensus 42 ~~s~~~IA~~AGVsk~tl-------------Y~~F~sKe~L~~a~ 73 (207)
T 3bjb_A 42 RVQMHEVAKRAGVAIGTL-------------YRYFPSKTHLFVAV 73 (207)
T ss_dssp GCCHHHHHHHHTCCHHHH-------------HHHCSSHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHH-------------HHHCCCHHHHHHHH
Confidence 455555555555555555 55666666666554
No 489
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=27.13 E-value=41 Score=23.99 Aligned_cols=34 Identities=6% Similarity=-0.004 Sum_probs=15.4
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l 52 (168)
|+..+++..+|++.||.+ ==|+.+.|.+.++..+
T Consensus 21 G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 55 (185)
T 2yve_A 21 SLETLSYDSLAEATGLSKSGLIYHFPSRHALLLGM 55 (185)
T ss_dssp CSTTCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHH
T ss_pred ChhhccHHHHHHHhCCChHHHHHhCcCHHHHHHHH
Confidence 444444444444444421 1144555555555443
No 490
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=27.10 E-value=60 Score=24.78 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=29.5
Q ss_pred hhhccCcHHHHHHHc-----CCChhHHHHHHHHcCCCCCC
Q 036926 4 SQYFYMPITKAAKEL-----NVGLTLLKKRCRELNIRRWP 38 (168)
Q Consensus 4 ~~yF~lPi~eAAr~L-----gVs~T~LKr~CR~lGI~RWP 38 (168)
.+.=...+.|.++.| +|+.+|+.|-.+++|+-+=|
T Consensus 15 ~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL~~vKv~ 54 (149)
T 1b4a_A 15 MSNDIETQDELVDRLREAGFNVTQATVSRDIKEMQLVKVP 54 (149)
T ss_dssp HHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHHcCCeEEE
Confidence 444556789999999 99999999999999986655
No 491
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=27.06 E-value=40 Score=25.86 Aligned_cols=25 Identities=16% Similarity=0.002 Sum_probs=18.7
Q ss_pred cCcHHHHHHHcCCChhHHHHHHHHc
Q 036926 8 YMPITKAAKELNVGLTLLKKRCREL 32 (168)
Q Consensus 8 ~lPi~eAAr~LgVs~T~LKr~CR~l 32 (168)
.+++.+.|+.|||+.+++-+...+|
T Consensus 62 ~~t~~eLa~~l~i~~stvs~~l~~L 86 (207)
T 2fxa_A 62 GASISEIAKFGVMHVSTAFNFSKKL 86 (207)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5678888888888887776666544
No 492
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=27.04 E-value=42 Score=24.61 Aligned_cols=21 Identities=14% Similarity=0.086 Sum_probs=12.5
Q ss_pred hccCcHHHHHHHcCCChhHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLK 26 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LK 26 (168)
|-+..+.++|++.|||..+|-
T Consensus 27 y~~ts~~~IA~~AGvskgtlY 47 (215)
T 1ui5_A 27 YESTTLSEIVAHAGVTKGALY 47 (215)
T ss_dssp TTTCCHHHHHHHHTCCHHHHH
T ss_pred cccCCHHHHHHHhCCCchhhH
Confidence 335566666666666666653
No 493
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=27.02 E-value=13 Score=29.13 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=0.0
Q ss_pred CcHHHHHHHcCCChhHHHHHHH
Q 036926 9 MPITKAAKELNVGLTLLKKRCR 30 (168)
Q Consensus 9 lPi~eAAr~LgVs~T~LKr~CR 30 (168)
-.+..||++||||.+++-+.-+
T Consensus 16 gS~s~AA~~L~isq~avS~~I~ 37 (313)
T 2h98_A 16 QSISKAAEKLCIAQPPLSRQIQ 37 (313)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHhCCCccHHHHHHH
Confidence 4678999999999988766554
No 494
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=26.91 E-value=35 Score=24.73 Aligned_cols=32 Identities=0% Similarity=-0.092 Sum_probs=17.4
Q ss_pred ccCcHHHHHHHcCCChhHHHHHHHHcCCCCCCchhhhcHHHHHHH
Q 036926 7 FYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSLQTLIKN 51 (168)
Q Consensus 7 F~lPi~eAAr~LgVs~T~LKr~CR~lGI~RWP~RKlkSL~~li~~ 51 (168)
-...+.++|++.|||..+| |+.++|-+.++..
T Consensus 30 ~~~s~~~IA~~aGvskgtl-------------Y~~F~sKe~L~~a 61 (219)
T 2w53_A 30 ARTTLEMIGARAGYTRGAV-------------YWHFKNKSEVLAA 61 (219)
T ss_dssp TTCCHHHHHHHHTSCHHHH-------------HTTCSSHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchHH-------------hhcCCCHHHHHHH
Confidence 3455555555555555555 5555555555544
No 495
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=26.64 E-value=33 Score=25.82 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=20.3
Q ss_pred hhccCcHHHHHHHcCCChhHHHHH
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKR 28 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~ 28 (168)
.|-.+.+.++|+++|||..+|.+.
T Consensus 23 G~~~~s~~~IA~~aGvs~~tlY~~ 46 (220)
T 1z0x_A 23 TLEQLSMRKVAKQLGVQAPAIYWY 46 (220)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHTT
T ss_pred CcccCCHHHHHHHcCCCHHHHHHh
Confidence 455789999999999999998753
No 496
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=26.61 E-value=53 Score=22.49 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=18.5
Q ss_pred cCcHHHHHHHc-CCChhHHHHHHHH
Q 036926 8 YMPITKAAKEL-NVGLTLLKKRCRE 31 (168)
Q Consensus 8 ~lPi~eAAr~L-gVs~T~LKr~CR~ 31 (168)
.+...|.|+.| ||+.++|-+.-++
T Consensus 27 ~~~~~eLa~~l~~is~~tls~~L~~ 51 (107)
T 2hzt_A 27 KKRTSELKRLMPNITQKMLTQQLRE 51 (107)
T ss_dssp CBCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 36788999999 9998877765553
No 497
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.52 E-value=40 Score=24.63 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=16.1
Q ss_pred hccCcHHHHHHHcCCChhHHHH
Q 036926 6 YFYMPITKAAKELNVGLTLLKK 27 (168)
Q Consensus 6 yF~lPi~eAAr~LgVs~T~LKr 27 (168)
|-...+.++|++.|||..+|-+
T Consensus 21 ~~~~s~~~IA~~AGvskgtlY~ 42 (208)
T 2g3b_A 21 IRGLRVNDVAEVAGVSPGLLYY 42 (208)
T ss_dssp HHHCCHHHHHHHHTSCHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHHH
Confidence 4467788888888888877744
No 498
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=26.42 E-value=70 Score=21.73 Aligned_cols=37 Identities=27% Similarity=0.443 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhCCCC------CCcHHHHHHHHHHHHHhhh
Q 036926 69 ALGILERERKLIEERPDL------EMEDTTKRLRQACFKANYK 105 (168)
Q Consensus 69 ai~~Lerek~lIee~P~~------~L~~~tKrlRQa~FK~~yk 105 (168)
-+.+|-+.|+.+...|++ -|++++-|+|...|.-++.
T Consensus 9 YL~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR~~Lf~~~~~ 51 (60)
T 3k6t_A 9 YLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEFP 51 (60)
T ss_dssp HHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 366777788888889985 5788999999999998874
No 499
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=26.29 E-value=36 Score=25.12 Aligned_cols=34 Identities=9% Similarity=0.104 Sum_probs=18.3
Q ss_pred CCChhHHHHHHHHcCCCC-CCchhhhcHHHHHHHH
Q 036926 19 NVGLTLLKKRCRELNIRR-WPHRKLMSLQTLIKNV 52 (168)
Q Consensus 19 gVs~T~LKr~CR~lGI~R-WP~RKlkSL~~li~~l 52 (168)
|+..++++.+|++.||.+ ==|+-+.+-+.++..+
T Consensus 47 G~~~~t~~~IA~~Agvs~~t~Y~~F~sKe~Ll~~~ 81 (230)
T 2iai_A 47 GYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRA 81 (230)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHH
T ss_pred CccccCHHHHHHHHCCChhHHHHhCCCHHHHHHHH
Confidence 555555555555555522 1255666666666554
No 500
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=26.26 E-value=45 Score=28.27 Aligned_cols=29 Identities=24% Similarity=0.110 Sum_probs=23.4
Q ss_pred hhccCcHHHHHHHcCCChhHHHHHHHHcC
Q 036926 5 QYFYMPITKAAKELNVGLTLLKKRCRELN 33 (168)
Q Consensus 5 ~yF~lPi~eAAr~LgVs~T~LKr~CR~lG 33 (168)
..=.++..|.|+.+|+|.+++.++.++|-
T Consensus 50 ~~~~~sr~ela~~~gls~~tv~~~v~~L~ 78 (429)
T 1z05_A 50 QKGPISRIDLSKESELAPASITKITRELI 78 (429)
T ss_dssp HHCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33457889999999999999999888663
Done!