BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036930
(1109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 103/208 (49%), Gaps = 15/208 (7%)
Query: 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLR 529
SL ILV+GK GVGKS+T+NSI GE +I+ F+ +++ G + I DTPGL
Sbjct: 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 98
Query: 530 SPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDXXXXXXXXXXXXXXVWQ 589
G +N L I+ + DV+LYVDRLD + D+ D +W
Sbjct: 99 E---GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWN 155
Query: 590 NAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRISQAIG---DPHLMNLNMMHPV 646
AI+ LTHA PPDG L Y+ F ++S A+ Q + D ++ PV
Sbjct: 156 KAIVALTHAQFSPPDG-----LPYDEFFSKRSEALLQVVRSGASLKKDAQASDI----PV 206
Query: 647 SLVENHQSCQKNRIGEIVLPNGQSWRPQ 674
L+EN C KN E VLPNG +W P
Sbjct: 207 VLIENSGRCNKNDSDEKVLPNGIAWIPH 234
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/208 (36%), Positives = 101/208 (48%), Gaps = 15/208 (7%)
Query: 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLR 529
SL ILV GK GVGKS+T+NSI GE +I+ F+ ++ G + I DTPGL
Sbjct: 39 SLTILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVXVSRSRAGFTLNIIDTPGLI 98
Query: 530 SPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDXXXXXXXXXXXXXXVWQ 589
G +N L I+ + DV+LYVDRLD + D+ D +W
Sbjct: 99 E---GGYINDXALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWN 155
Query: 590 NAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRISQAIG---DPHLMNLNMMHPV 646
AI+ LTHA PPDG L Y+ F ++S A+ Q + D ++ PV
Sbjct: 156 KAIVALTHAQFSPPDG-----LPYDEFFSKRSEALLQVVRSGASLKKDAQASDI----PV 206
Query: 647 SLVENHQSCQKNRIGEIVLPNGQSWRPQ 674
L+EN C KN E VLPNG +W P
Sbjct: 207 VLIENSGRCNKNDSDEKVLPNGIAWIPH 234
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 103/217 (47%), Gaps = 23/217 (10%)
Query: 464 KDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIF 523
+ DM+ S+ +LVLGK GVGKS+T+NS+ GE+ ++ F+ +++ + G I I
Sbjct: 31 QKDMN-SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINII 89
Query: 524 DTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDXXXXXXXXXXX 583
DTPGL VN + L I+ + DV+LYVDRLD + D D
Sbjct: 90 DTPGLVEAGY---VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTF 146
Query: 584 XXXVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRI-------SQAIGDPH 636
+W +L LTHA PPD LSYE F ++S ++ + I Q D
Sbjct: 147 GKEIWCKTLLVLTHAQFSPPD-----ELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSA 201
Query: 637 LMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRP 673
+ V EN C KN E LPNG++W P
Sbjct: 202 I-------AVVYAENSGRCSKNDKDEKALPNGEAWIP 231
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 103/217 (47%), Gaps = 23/217 (10%)
Query: 464 KDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIF 523
+ DM+ S+ +LVLGK GVGKS+T+NS+ GE+ ++ F+ +++ + G I I
Sbjct: 30 QKDMN-SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINII 88
Query: 524 DTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDXXXXXXXXXXX 583
DTPGL VN + L I+ + DV+LYVDRLD + D D
Sbjct: 89 DTPGLVEAGY---VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTF 145
Query: 584 XXXVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRI-------SQAIGDPH 636
+W +L LTHA PPD LSYE F ++S ++ + I Q D
Sbjct: 146 GKEIWCKTLLVLTHAQFSPPD-----ELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSA 200
Query: 637 LMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRP 673
+ V EN C KN E LPNG++W P
Sbjct: 201 I-------AVVYAENSGRCSKNDKDEKALPNGEAWIP 230
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 103/217 (47%), Gaps = 23/217 (10%)
Query: 464 KDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIF 523
+ DM+ S+ +LVLGK GVGKS+T+NS+ GE+ ++ F+ +++ + G I I
Sbjct: 31 QKDMN-SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINII 89
Query: 524 DTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDXXXXXXXXXXX 583
DTPGL VN + L I+ + DV+LYVDRLD + D D
Sbjct: 90 DTPGLVEAGY---VNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTF 146
Query: 584 XXXVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRI-------SQAIGDPH 636
+W +L LTHA PPD LSYE F ++S ++ + I Q D
Sbjct: 147 GKEIWCKTLLVLTHAQFSPPD-----ELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSA 201
Query: 637 LMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRP 673
+ V EN C KN E LPNG++W P
Sbjct: 202 I-------AVVYAENSGRCSKNDKDEKALPNGEAWIP 231
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 102/217 (47%), Gaps = 23/217 (10%)
Query: 464 KDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIF 523
+ DM+ S+ +LVLGK GVGKS+T+NS+ GE+ ++ F+ +++ + G I I
Sbjct: 31 QKDMN-SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINII 89
Query: 524 DTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDXXXXXXXXXXX 583
DTPGL VN + L I+ + DV+LYVDRLD + D D
Sbjct: 90 DTPGLVEAGY---VNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTF 146
Query: 584 XXXVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRI-------SQAIGDPH 636
+W +L LTHA PPD LSYE F ++S + + I Q D
Sbjct: 147 GKEIWCKTLLVLTHAQFSPPD-----ELSYETFSSKRSDELLKTIRAGSKMRKQEFEDSA 201
Query: 637 LMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRP 673
+ V EN C KN E LPNG++W P
Sbjct: 202 I-------AVVYAENSGRCSKNDKDEKALPNGEAWIP 231
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTP 526
++ L ++++GK VGKS +N + E+++ + T V ++ G+ RI DT
Sbjct: 240 LNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTA 299
Query: 527 GLRSPA---IGRTVNKKTLASIRKSIKKFPPDVVLYV 560
G+RS + R ++TL I K+ D+VL+V
Sbjct: 300 GVRSETNDLVERLGIERTLQEIEKA------DIVLFV 330
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 10/70 (14%)
Query: 469 FSLNILVLGKTGVGKSATINSIF----GEEKSTINAFE--PATSSVKVIAGLVH--GVKI 520
F NI+V+G++G+GKS +N++F + S+ N E P T +K I ++ GVK+
Sbjct: 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM 60
Query: 521 R--IFDTPGL 528
+ + DTPG
Sbjct: 61 KLTVIDTPGF 70
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 469 FSLNILVLGKTGVGKSATINSIF----GEEKSTINAFEPATSSVKVIAGLV----HGVKI 520
F ++V+G++G+GKS INS+F E+ A E +V++ A V GVK+
Sbjct: 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 521 R--IFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPD 555
R + DTPG R K ++ I + +++ D
Sbjct: 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHD 132
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 10/97 (10%)
Query: 469 FSLNILVLGKTGVGKSATINSIF----GEEKSTINAFEPATSSVKVIAGLV----HGVKI 520
F ++V+G++G+GKS INS+F E+ A E +V++ A V GVK+
Sbjct: 4 FEFTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKL 63
Query: 521 R--IFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPD 555
R + DTPG R K ++ I + +++ D
Sbjct: 64 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHD 100
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 469 FSLNILVLGKTGVGKSATINSIF----GEEKSTINAFEPATSSVKVIAGLV----HGVKI 520
F + V+G++G+GKS INS+F E+ A E +V++ A V GVK+
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 521 R--IFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPD 555
R + DTPG R K ++ I + +++ D
Sbjct: 77 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHD 113
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 469 FSLNILVLGKTGVGKSATINSIF----GEEKSTINAFEPATSSVKVIAGLV----HGVKI 520
F + V+G++G+GKS INS+F E+ A E +V++ A V GVK+
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 521 R--IFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPD 555
R + DTPG R K ++ I + +++ D
Sbjct: 96 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHD 132
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH-GVKIRIFDTPGLR 529
++ ++ GK GKS +N++ G+E++ ++ P T+ + +H R+ DT GLR
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHM-PGTTRDYIEECFIHDKTMFRLTDTAGLR 292
Query: 530 SPAIGRTVNKKTLASIRKS-IKKFPPDVVLYVDRLDTHTRD 569
G + + IR+S +K D++LY+ L T D
Sbjct: 293 EA--GEEIEHE---GIRRSRMKMAEADLILYLLDLGTERLD 328
>pdb|3LXX|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 4
Length = 239
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 15/66 (22%)
Query: 471 LNILVLGKTGVGKSATINSIFGEE--------KSTINAFEPATSSVKVIAGLVHGVKIRI 522
L I+++GKTG GKSAT NSI G + KS E +SS K ++ +
Sbjct: 30 LRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE-------TELVV 82
Query: 523 FDTPGL 528
DTPG+
Sbjct: 83 VDTPGI 88
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKV--IAGLVHGVKIRIFDTPGLRS 530
+ ++GK VGKS +N++ G + S I+ + T+ ++V + + + +I DTPG+
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISP-KAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 70
Query: 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYV 560
P + + ++S+++ DV+L++
Sbjct: 71 PKKSDVLGHSMVEIAKQSLEE--ADVILFM 98
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 5/90 (5%)
Query: 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKV--IAGLVHGVKIRIFDTPGLRS 530
+ ++GK VGKS +N++ G + S I+ + T+ ++V + + + +I DTPG+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISP-KAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71
Query: 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYV 560
P + + ++S+++ DV+L++
Sbjct: 72 PKKSDVLGHSMVEIAKQSLEE--ADVILFM 99
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 460 EIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVK 519
++E K ++ ++ + ++G+ VGKS N+I +E++ ++ T + G K
Sbjct: 170 DLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229
Query: 520 IRIFDTPGLR--SPAIGRTVNKKTLASIRKSIKKFPPDVVLYV 560
DT GLR S RTV K + + SI+K DVV+ V
Sbjct: 230 YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEK--ADVVVIV 270
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 465 DDMDFSLNILVLGKTGVGKS-----ATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVK 519
D+ D+ ++++G +GVGKS T N E KSTI E AT S++V +K
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-EFATRSIQVDG---KTIK 79
Query: 520 IRIFDTPGL-RSPAI 533
+I+DT GL R AI
Sbjct: 80 AQIWDTAGLERYRAI 94
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIF-DTPG 527
+S + ++GK VGKS +N++ G + + I+ P T+ ++ L G + +F DTPG
Sbjct: 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTEGRRQIVFVDTPG 64
Query: 528 LRSP--AIGRTVNKKTLASI 545
L P A+G ++++ ++
Sbjct: 65 LHKPMDALGEFMDQEVYEAL 84
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 34.7 bits (78), Expect = 0.32, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 465 DDMDFSLNILVLGKTGVGKSA-----TINSIFGEEKSTINAFEPATSSVKVIAGLVHGVK 519
D+ D+ ++++G +GVGKS T N E KSTI E AT S++V +K
Sbjct: 3 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-EFATRSIQVDG---KTIK 58
Query: 520 IRIFDTPGL 528
+I+DT GL
Sbjct: 59 AQIWDTAGL 67
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 34.7 bits (78), Expect = 0.34, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 465 DDMDFSLNILVLGKTGVGKSA-----TINSIFGEEKSTINAFEPATSSVKVIAGLVHGVK 519
D+ D+ ++++G +GVGKS T N E KSTI E AT S++V +K
Sbjct: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-EFATRSIQVDG---KTIK 61
Query: 520 IRIFDTPGL 528
+I+DT GL
Sbjct: 62 AQIWDTAGL 70
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 465 DDMDFSLNILVLGKTGVGKS-----ATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVK 519
D+ D+ ++++G +GVGKS T N E KSTI E AT S++V +K
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-EFATRSIQVDG---KTIK 79
Query: 520 IRIFDTPG 527
+I+DT G
Sbjct: 80 AQIWDTAG 87
>pdb|2XTM|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTM|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 1-234
pdb|2XTN|A Chain A, Crystal Structure Of Gtp-Bound Human Gimap2, Amino Acid
Residues 1-234
Length = 234
Score = 33.1 bits (74), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPA------TSSVKVIAGLVHGVKIRIFD 524
L I+++GKTG GKSA NSI ++ AFE T + G +I I D
Sbjct: 23 LRIILVGKTGTGKSAAGNSILRKQ-----AFESKLGSQTLTKTCSKSQGSWGNREIVIID 77
Query: 525 TPGLRS-----PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHT 567
TP + S A+ + V + L S P V+L V +L +T
Sbjct: 78 TPDMFSWKDHCEALYKEVQRCYLLSAP------GPHVLLLVTQLGRYT 119
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 466 DMDFSLNILVLGKTGVGKSATINSIFGEE-----KSTINAFEPATSSVKVIAGLVHGVKI 520
D D+ I+++G +GVGKS ++ +E KSTI E AT +++V +K
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGV-EFATRTIEVEN---KKIKA 61
Query: 521 RIFDTPGL-RSPAI 533
+I+DT GL R AI
Sbjct: 62 QIWDTAGLERYRAI 75
>pdb|2XTO|A Chain A, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
pdb|2XTO|B Chain B, Crystal Structure Of Gdp-Bound Human Gimap2, Amino Acid
Residues 21-260
Length = 240
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPA------TSSVKVIAGLVHGVKIRIFD 524
L I+++GKTG GKSA NSI ++ AFE T + G +I I D
Sbjct: 3 LRIILVGKTGTGKSAAGNSILRKQ-----AFESKLGSQTLTKTCSKSQGSWGNREIVIID 57
Query: 525 TPGLRS-----PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHT 567
TP + S A+ + V + L S P V+L V +L +T
Sbjct: 58 TPDMFSWKDHCEALYKEVQRCYLLSAP------GPHVLLLVTQLGRYT 99
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS 507
F NIL +G+TG+GKS ++++F +T EPAT +
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLF----NTKFEGEPATHT 75
>pdb|3P1J|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|C Chain C, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
pdb|3P1J|D Chain D, Crystal Structure Of Human Gtpase Imap Family Member 2 In
The Nucleotide-Free State
Length = 209
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPA------TSSVKVIAGLVHGVKIRIFD 524
L I+++GKTG GKSA NSI ++ AFE T + G +I I D
Sbjct: 6 LRIILVGKTGTGKSAAGNSILRKQ-----AFESKLGSQTLTKTCSKSQGSWGNREIVIID 60
Query: 525 TPGLRS-----PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHT 567
TP + S A+ + V + L S P V+L V +L +T
Sbjct: 61 TPDMFSWKDHCEALYKEVQRCYLLSAP------GPHVLLLVTQLGRYT 102
>pdb|3V70|A Chain A, Crystal Structure Of Human Gtpase Imap Family Member 1
pdb|3V70|B Chain B, Crystal Structure Of Human Gtpase Imap Family Member 1
Length = 247
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVK------IRIFDTP 526
++++G+TG GKSAT NSI G+ + F + V G + + + DTP
Sbjct: 24 LILVGRTGAGKSATGNSILGQRR-----FFSRLGATSVTRACTTGSRRWDKCHVEVVDTP 78
Query: 527 GLRSPAIGRT 536
+ S + +T
Sbjct: 79 DIFSSQVSKT 88
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 469 FSLNILVLGKTGVGKSATINSIF----------GEEKSTINAFEPATSSVKVIAGLVHGV 518
F ++V+G++G+GKS INS+F G + S V + G V +
Sbjct: 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLL 89
Query: 519 KIRIFDTPGL 528
+ I DTPG
Sbjct: 90 -LTIVDTPGF 98
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 466 DMDFSLNILVLGKTGVGKSA-----TINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKI 520
+ D+ ++++G +GVGKS T N E KSTI E AT S++V +K
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-EFATRSIQVDG---KTIKA 56
Query: 521 RIFDTPGL 528
+I+DT GL
Sbjct: 57 QIWDTAGL 64
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRS 530
+ +++ G+ GKS+ +N++ G E + + T V + G+ + I DT GLR
Sbjct: 8 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 67
Query: 531 PA 532
+
Sbjct: 68 AS 69
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLR 529
L + ++G+ VGKS+ +N+ +++ + T V +V G+ +++ DT G+R
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIR 283
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRS 530
+ +++ G+ GKS+ +N++ G E + + T V + G+ + I DT GLR
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE 64
Query: 531 PA 532
+
Sbjct: 65 AS 66
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 434 RLALALGGHSSQAVSIEAAKRVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIF-- 491
R+A LG + AAK + +E + ++ V+G T VGKS IN I
Sbjct: 126 RMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEE 185
Query: 492 --GEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGL 528
G+ ++ P T+ + L G ++DTPG+
Sbjct: 186 ATGKGNVITTSYFPGTTLDMIEIPLESGAT--LYDTPGI 222
>pdb|2XTP|A Chain A, Crystal Structure Of Nucleotide-Free Human Gimap2, Amino
Acid Residues 1-260
Length = 260
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 22/108 (20%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPA------TSSVKVIAGLVHGVKIRIFD 524
L I+++GKTG GKSA NSI ++ AFE T + G +I I D
Sbjct: 23 LRIILVGKTGTGKSAAGNSILRKQ-----AFESKLGSQTLTKTCSKSQGSWGNREIVIID 77
Query: 525 TPGLRS-----PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHT 567
TP S A+ + V + L S P V+L V +L +T
Sbjct: 78 TPDXFSWKDHCEALYKEVQRCYLLSAP------GPHVLLLVTQLGRYT 119
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 25/115 (21%)
Query: 715 LSSLLQSHTHPKLSADQGGDGVESDVELVDFSGSDLEDE--------DEYDQLPPFK--- 763
L +L++ + +L +Q +E D+ ++ + +LE+E D Y +L F+
Sbjct: 242 LLRVLETGSFTRLGGNQK---IEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYL 298
Query: 764 -PLRKSQ----------VAKLSKEQRKAYFEEYDYRVQLLQKKQWKEEVKRLREM 807
PLR+ + K +KE +K FE + + L K++WK V+ L+ +
Sbjct: 299 PPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLXKQEWKGNVRELKNL 353
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 472 NILVLGKTGVGKSATINSIFGE-EKSTINAFEPAT-------SSVKVIAGLVHGVKIRIF 523
NI + G TG GK+A + + + K + F+ + +V+A L+ + +++
Sbjct: 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKV- 105
Query: 524 DTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHND 572
P G ++ + + K+++ + VV+ +D +D + +ND
Sbjct: 106 -------PFTGLSI-AELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND 146
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 469 FSLNILVLGKTGVGKSATINSIF----------GEEKSTINAFEPATSSVKVIAGLVHGV 518
F ++V+G++G+GKS INS+F G + S V + G V +
Sbjct: 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQ-L 65
Query: 519 KIRIFDTPGL 528
+ I DTPG
Sbjct: 66 LLTIVDTPGF 75
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 469 FSLNILVLGKTGVGKSATINSIF----------GEEKSTINAFEPATSSVKVIAGLVHGV 518
F ++V+G++G+GKS INS+F G + S V + G V +
Sbjct: 2 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQ-L 60
Query: 519 KIRIFDTPGL 528
+ I DTPG
Sbjct: 61 LLTIVDTPGF 70
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 9/65 (13%)
Query: 468 DFSLNILVLGKTGVGKSA-----TINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRI 522
D+ ++++G +GVGKS T N E KSTI E AT S++V +K +I
Sbjct: 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTI-GVEFATRSIQVDG---KTIKAQI 58
Query: 523 FDTPG 527
+DT G
Sbjct: 59 WDTAG 63
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 30.8 bits (68), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 464 KDDMDFSLNILVLGKTGVGKS-----ATINSIFGEEKSTINAFEPATSSVKVIAGLVHGV 518
+ D+ ++++G +GVGKS T N E KSTI E AT S++V +
Sbjct: 14 RGSYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-EFATRSIQVDG---KTI 69
Query: 519 KIRIFDTPG 527
K +I+DT G
Sbjct: 70 KAQIWDTAG 78
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPA 532
+++ G+ GKS+ +N++ G E + + T V + G + I DT GLR +
Sbjct: 7 VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAGLREAS 66
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 30.4 bits (67), Expect = 6.3, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 465 DDMDFSLNILVLGKTGVGKSATINSI----FGEEKSTINAFEPATSSVKVIAGLVHGVKI 520
+D +F ++++G++GVGK+ ++ F + T E +T +V + VK
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTA---AVKA 76
Query: 521 RIFDTPGL 528
+I+DT GL
Sbjct: 77 QIWDTAGL 84
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 465 DDMDFSLNILVLGKTGVGKSATINSI----FGEEKSTINAFEPATSSVKVIAGLVHGVKI 520
+D +F ++++G++GVGK+ ++ F + T E +T +V + VK
Sbjct: 5 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTA---AVKA 61
Query: 521 RIFDTPGL 528
+I+DT GL
Sbjct: 62 QIWDTAGL 69
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 30.0 bits (66), Expect = 8.2, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 465 DDMDFSLNILVLGKTGVGKSATINSIFGEE-----KSTINAFEPATSSVKVIAGLVHGVK 519
D D+ I+++G +GVGKS ++ +E KSTI E AT S+++ + +K
Sbjct: 2 DYYDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGV-EFATKSIQLKNNKI--IK 58
Query: 520 IRIFDTPG 527
+I+DT G
Sbjct: 59 AQIWDTAG 66
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRS 530
+ ++G+ VGKS+ +N++ GEE+ ++ T + + + I DT G+R
Sbjct: 196 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 255
Query: 531 PA-IGRTVNKKTLASIRKSIKK 551
+ T K ++ K+I +
Sbjct: 256 KGKVYETTEKYSVLRALKAIDR 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,997,079
Number of Sequences: 62578
Number of extensions: 1206421
Number of successful extensions: 2418
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2385
Number of HSP's gapped (non-prelim): 60
length of query: 1109
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1000
effective length of database: 8,152,335
effective search space: 8152335000
effective search space used: 8152335000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)