BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036930
(1109 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O81283|TC159_ARATH Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana
GN=TOC159 PE=1 SV=1
Length = 1503
Score = 983 bits (2540), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/859 (58%), Positives = 637/859 (74%), Gaps = 29/859 (3%)
Query: 268 LIFGSSRTTRQITHGLEERLASSSITESED----FQGHSQRIDGEIVTESDDEPDAKMSG 323
+IFGSS +Q LE+ ASS I D S RIDG+IVT+SD++ D + G
Sbjct: 639 MIFGSSEAAKQFLAELEK--ASSGIEAHSDEANISNNMSDRIDGQIVTDSDEDVDTEDEG 696
Query: 324 EGNELFDSATLIALLKSATGA-ASDGGGLPSNRADGSNVFTYQHHAGSGSLFPSLSPG-- 380
E ++FD+A L ALLK+ATG +S+GG DG+ +F+ AG S L P
Sbjct: 697 E-EKMFDTAALAALLKAATGGGSSEGGNFTITSQDGTKLFSMDRPAGLSSSLRPLKPAAA 755
Query: 381 PSINLE----------GDVTKDKLSDEEKRKIEKIQILRVKFLRLVQRLGHSFDDSVVAQ 430
P N D T+ LS+EEK+K+EK+Q LRVKFLRL+QRLGHS +DS+ AQ
Sbjct: 756 PRANRSNIFSNSNVTMADETEINLSEEEKQKLEKLQSLRVKFLRLLQRLGHSAEDSIAAQ 815
Query: 431 VLYRLALALGGHSSQAVSIEAAKRVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSI 490
VLYRLAL G + Q S++AAK+ A + E E +++ FSLNILVLGK GVGKSATINSI
Sbjct: 816 VLYRLALLAGRQAGQLFSLDAAKKKAVESEAEGNEELIFSLNILVLGKAGVGKSATINSI 875
Query: 491 FGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK 550
G + ++I+AF +T+SV+ I+G V+GVKI DTPGL+S A+ ++ N K L+S++K +K
Sbjct: 876 LGNQIASIDAFGLSTTSVREISGTVNGVKITFIDTPGLKSAAMDQSTNAKMLSSVKKVMK 935
Query: 551 KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLP 610
K PPD+VLYVDRLDT TRD N+LPLL+++T+SLG+S+W+NAI+ LTHAAS PPDGPSG P
Sbjct: 936 KCPPDIVLYVDRLDTQTRDLNNLPLLRTITASLGTSIWKNAIVTLTHAASAPPDGPSGTP 995
Query: 611 LSYEVFVGQQSHAIQQRISQAIGDPHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQS 670
LSY+VFV Q SH +QQ I QA+GD LMN ++M+PVSLVENH C+KNR G VLPNGQ+
Sbjct: 996 LSYDVFVAQCSHIVQQSIGQAVGDLRLMNPSLMNPVSLVENHPLCRKNREGVKVLPNGQT 1055
Query: 671 WRPQLLLLCFSLKILSEANSVSKSQGPAP-KKFFGFR-RPAPLSYFLSSLLQSHTHPKLS 728
WR QLLLLC+SLK+LSE NS+ + Q P +K FGFR R PL Y LS LLQS HPKL
Sbjct: 1056 WRSQLLLLCYSLKVLSETNSLLRPQEPLDHRKVFGFRVRSPPLPYLLSWLLQSRAHPKLP 1115
Query: 729 ADQGGDGVESDVELVDFSGSDLED--EDEYDQLPPFKPLRKSQVAKLSKEQRKAYFEEYD 786
DQGGD V+SD+E+ D S S+ ED +DEYDQLPPFKPLRK+Q+AKLS EQRKAYFEEYD
Sbjct: 1116 GDQGGDSVDSDIEIDDVSDSEQEDGEDDEYDQLPPFKPLRKTQLAKLSNEQRKAYFEEYD 1175
Query: 787 YRVQLLQKKQWKEEVKRLREMKKKGYRSNNDDEREDGNLEDDP----PATVPAMLPDFAL 842
YRV+LLQKKQW+EE+KR++EMKK G + + G EDDP PA VP LPD L
Sbjct: 1176 YRVKLLQKKQWREELKRMKEMKKNGKKLGESEFGYPGE-EDDPENGAPAAVPVPLPDMVL 1234
Query: 843 PPSFDGDSPAYRYRLLEATSQLLARPVLDSPSWDHDCGFDGVSLERNFVIANQFPGAFAF 902
PPSFD D+ AYRYR LE TSQLL RPVLD+ WDHDCG+DGV+ E + +A++FP
Sbjct: 1235 PPSFDSDNSAYRYRYLEPTSQLLTRPVLDTHGWDHDCGYDGVNAEHSLALASRFPATATV 1294
Query: 903 QITKDKKEFNIHLDSSISAKFAESGSTMAGLDIQTVGRQLAYIFRSETKFRSFKMNKTSG 962
Q+TKDKKEFNIHLDSS+SAK E+GSTMAG DIQ VG+QLAY+ R ETKF++ + NKT+
Sbjct: 1295 QVTKDKKEFNIHLDSSVSAKHGENGSTMAGFDIQNVGKQLAYVVRGETKFKNLRKNKTTV 1354
Query: 963 GVSITLLGENVATGLKIEDEIAVGKRLVLSGNAGAVQCRGDTAYGANLELRLKDKDFPIG 1022
G S+T LGEN+ATG+K+ED+IA+GKRLVL G+ G ++ +GD+AYGANLE+RL++ DFPIG
Sbjct: 1355 GGSVTFLGENIATGVKLEDQIALGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADFPIG 1414
Query: 1023 NNNSSLGLSLMNWRGDLNLMANVQSQFSVGRSSKMAVCIGLNKQRSGQVTVKLSSSEQLQ 1082
+ SS GLSL+ WRGDL L AN+QSQ SVGR+SK+A+ GLN + SGQ+TV+ SSS+QLQ
Sbjct: 1415 QDQSSFGLSLVKWRGDLALGANLQSQVSVGRNSKIALRAGLNNKMSGQITVRTSSSDQLQ 1474
Query: 1083 MALIGIVPIALSGFRSICP 1101
+AL I+PIA+S ++SI P
Sbjct: 1475 IALTAILPIAMSIYKSIRP 1493
>sp|Q9SLF3|TC132_ARATH Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana
GN=TOC132 PE=1 SV=1
Length = 1206
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/707 (49%), Positives = 472/707 (66%), Gaps = 20/707 (2%)
Query: 395 SDEEKRKIEKIQILRVKFLRLVQRLGHSFDDSVVAQVLYRLALA-----LGGHSSQAVSI 449
+DE EK+Q++RVKFLRL RLG + + VVAQVLYRL LA G A S
Sbjct: 494 ADEHDETREKLQLIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGSRVGAFSF 553
Query: 450 EAAKRVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVK 509
+ A +AEQ E +D +DFS I+VLGK+GVGKSATINSIF E K +AF+ T V+
Sbjct: 554 DRASAMAEQLEAAGQDPLDFSCTIMVLGKSGVGKSATINSIFDEVKFCTDAFQMGTKRVQ 613
Query: 510 VIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRD 569
+ GLV G+K+R+ DTPGL + N+K L S++ IKK PPD+VLY+DRLD +RD
Sbjct: 614 DVEGLVQGIKVRVIDTPGLLPSWSDQAKNEKILNSVKAFIKKNPPDIVLYLDRLDMQSRD 673
Query: 570 HNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRIS 629
D+PLL++++ G S+W NAI+ LTHAAS PPDGP+G SY++FV Q+SH IQQ I
Sbjct: 674 SGDMPLLRTISDVFGPSIWFNAIVGLTHAASVPPDGPNGTASSYDMFVTQRSHVIQQAIR 733
Query: 630 QAIGDPHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKILSEAN 689
QA GD LMN PVSLVENH +C+ NR G+ VLPNGQ W+P LLLL F+ KIL+EAN
Sbjct: 734 QAAGDMRLMN-----PVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEAN 788
Query: 690 SVSKSQGPAPKKFFGFRRPAPLSYFLSSLLQS-HTHPKLSADQGGDGVESDVELVDFSGS 748
++ K Q P + F R AP FL S L PKL Q G + + E S
Sbjct: 789 ALLKLQDNIPGRPFAARSKAPPLPFLLSSLLQSRPQPKLPEQQYG---DEEDEDDLEESS 845
Query: 749 DLEDEDEYDQLPPFKPLRKSQVAKLSKEQRKAYFEEYDYRVQLLQKKQWKEEVKRLREMK 808
D ++E EYDQLPPFK L K+Q+A LSK Q+K Y +E +YR +LL KKQ KEE KR + K
Sbjct: 846 DSDEESEYDQLPPFKSLTKAQMATLSKSQKKQYLDEMEYREKLLMKKQMKEERKRRKMFK 905
Query: 809 KKGYRSNNDDEREDGNLEDDP--PATVPAMLPDFALPPSFDGDSPAYRYRLLEATSQLLA 866
K + + N+E++ PA+VP +PD +LP SFD D+P +RYR L++++Q L
Sbjct: 906 KFAAEIKDLPDGYSENVEEESGGPASVPVPMPDLSLPASFDSDNPTHRYRYLDSSNQWLV 965
Query: 867 RPVLDSPSWDHDCGFDGVSLERNFVIANQFPGAFAFQITKDKKEFNIHLDSSISAKFAES 926
RPVL++ WDHD G++GV+ ER FV+ + P + + Q+TKDKK+ N+ L+ + S K E
Sbjct: 966 RPVLETHGWDHDIGYEGVNAERLFVVKEKIPISVSGQVTKDKKDANVQLEMASSVKHGEG 1025
Query: 927 GSTMAGLDIQTVGRQLAYIFRSETKFRSFKMNKTSGGVSITLLGENVATGLKIEDEIAVG 986
ST G D+QTVG++LAY RSET+F +F+ NK + G+S+T LG++V+ GLK+ED+
Sbjct: 1026 KSTSLGFDMQTVGKELAYTLRSETRFNNFRRNKAAAGLSVTHLGDSVSAGLKVEDKFIAS 1085
Query: 987 K--RLVLSGNAGAVQCRGDTAYGANLELRLKDKDFPIGNNNSSLGLSLMNWRGDLNLMAN 1044
K R+V+SG GA+ RGD AYG LE +L+DKD+P+G ++LGLS+M+W GDL + N
Sbjct: 1086 KWFRIVMSG--GAMTSRGDFAYGGTLEAQLRDKDYPLGRFLTTLGLSVMDWHGDLAIGGN 1143
Query: 1045 VQSQFSVGRSSKMAVCIGLNKQRSGQVTVKLSSSEQLQMALIGIVPI 1091
+QSQ +GRSS + LN + +GQV+V+++SSEQLQ+A++ IVP+
Sbjct: 1144 IQSQVPIGRSSNLIARANLNNRGAGQVSVRVNSSEQLQLAMVAIVPL 1190
>sp|Q9LUS2|TC120_ARATH Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana
GN=TOC120 PE=1 SV=1
Length = 1089
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/829 (44%), Positives = 510/829 (61%), Gaps = 56/829 (6%)
Query: 293 TESEDFQG-HSQRIDGEIVTESDDEPDAKMSGEGNELFDSATLIALLKSATGAASDGGGL 351
TES++ G H + + EIV + D + + ++ + + + S T + SD L
Sbjct: 270 TESQNSNGGHDIQSNKEIVKQQDSSVNIGPEIKESQHMERESEVLSSVSPTESRSDTAAL 329
Query: 352 PSNRADGSNVFTYQHHAGSGSLFPSLSPGPSIN----LEGDVTKDKL----------SDE 397
P R AG G P L P P + + G+V+ ++ +DE
Sbjct: 330 PPARP-----------AGLGRAAPLLEPAPRVTQQPRVNGNVSHNQPQQAEDSTTAETDE 378
Query: 398 EKRKIEKIQILRVKFLRLVQRLGHSFDDSVVAQVLYRLALA-----LGGHSSQAVSIEAA 452
EK+Q +RVKFLRL RLG + + VVAQVLYRL LA G A S + A
Sbjct: 379 HDETREKLQFIRVKFLRLSHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGSRVGAFSFDRA 438
Query: 453 KRVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIA 512
+AEQ E +D +DFS I+VLGK+GVGKSATINSIF E K + +AF+ T V+ I
Sbjct: 439 SAMAEQLEAAAQDPLDFSCTIMVLGKSGVGKSATINSIFDELKISTDAFQVGTKKVQDIE 498
Query: 513 GLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHND 572
G V G+K+R+ DTPGL + N+K L S+R IKK PPD+VLY+DRLD +RD D
Sbjct: 499 GFVQGIKVRVIDTPGLLPSWSDQHKNEKILKSVRAFIKKSPPDIVLYLDRLDMQSRDSGD 558
Query: 573 LPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRISQAI 632
+PLL+++T G S+W NAI+ LTHAAS PPDGP+G SY++FV Q+SH IQQ I QA
Sbjct: 559 MPLLRTITDVFGPSIWFNAIVGLTHAASAPPDGPNGTASSYDMFVTQRSHVIQQAIRQAA 618
Query: 633 GDPHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKILSEANSVS 692
GD LMN PVSLVENH +C+ NR G+ VLPNGQ W+P LLLL F+ KIL+EAN++
Sbjct: 619 GDMRLMN-----PVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANALL 673
Query: 693 KSQGPAPKKFFGFRRPAPLSYFLSSLL-QSHTHPKLSADQGGDGVESDVELVDFSGSDLE 751
K Q P F R AP L S L QS KL Q + D E SD E
Sbjct: 674 KLQDNIPGGQFATRSKAPPLPLLLSSLLQSRPQAKLPEQQY---DDEDDEDDLDESSDSE 730
Query: 752 DEDEYDQLPPFKPLRKSQVAKLSKEQRKAYFEEYDYRVQLLQKKQWKEEVKRLREMKK-- 809
+E EYD+LPPFK L K+++ KLSK Q+K Y +E +YR +L K+Q KEE KR + +KK
Sbjct: 731 EESEYDELPPFKRLTKAEMTKLSKSQKKEYLDEMEYREKLFMKRQMKEERKRRKLLKKFA 790
Query: 810 -------KGYRSNNDDEREDGNLEDDPPATVPAMLPDFALPPSFDGDSPAYRYRLLEATS 862
GY N ++ER + PA+VP +PD +LP SFD D+P +RYR L+ ++
Sbjct: 791 AEIKDMPNGYSENVEEERSE-------PASVPVPMPDLSLPASFDSDNPTHRYRYLDTSN 843
Query: 863 QLLARPVLDSPSWDHDCGFDGVSLERNFVIANQFPGAFAFQITKDKKEFNIHLDSSISAK 922
Q L RPVL++ WDHD G++GV+ ER FV+ ++ P +F+ Q+TKDKK+ ++ L+ + S K
Sbjct: 844 QWLVRPVLETHGWDHDIGYEGVNAERLFVVKDKIPVSFSGQVTKDKKDAHVQLELASSVK 903
Query: 923 FAESGSTMAGLDIQTVGRQLAYIFRSETKFRSFKMNKTSGGVSITLLGENVATGLKIEDE 982
E ST G D+Q G++LAY RSET+F F+ NK + G+S+TLLG++V+ GLK+ED+
Sbjct: 904 HGEGRSTSLGFDMQNAGKELAYTIRSETRFNKFRKNKAAAGLSVTLLGDSVSAGLKVEDK 963
Query: 983 IAVGKRLVLSGNAGAVQCRGDTAYGANLELRLKDKDFPIGNNNSSLGLSLMNWRGDLNLM 1042
+ KR + + GA+ RGD AYG LE + +DKD+P+G S+LGLS+M+W GDL +
Sbjct: 964 LIANKRFRMVMSGGAMTSRGDVAYGGTLEAQFRDKDYPLGRFLSTLGLSVMDWHGDLAIG 1023
Query: 1043 ANVQSQFSVGRSSKMAVCIGLNKQRSGQVTVKLSSSEQLQMALIGIVPI 1091
N+QSQ +GRSS + LN + +GQV+++++SSEQLQ+A++ +VP+
Sbjct: 1024 GNIQSQVPIGRSSNLIARANLNNRGAGQVSIRVNSSEQLQLAVVALVPL 1072
>sp|Q6S5G3|TOC90_ARATH Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana
GN=TOC90 PE=1 SV=1
Length = 793
Score = 482 bits (1240), Expect = e-135, Method: Compositional matrix adjust.
Identities = 285/716 (39%), Positives = 419/716 (58%), Gaps = 37/716 (5%)
Query: 394 LSDEEKRKIEKIQILRVKFLRLVQRLGHSFDDSVVAQVLYRLALALGGHSSQA------V 447
L+ ++ + KI L+V+FLRLVQR G S ++ +V++VLYR+ LA+ + ++ +
Sbjct: 84 LNGKKHNPLAKIGGLQVQFLRLVQRFGQSQNNILVSKVLYRVHLAMLIRAEESELKNVKL 143
Query: 448 SIEAAKRVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS 507
+ AK +A + E ++DFSL ILVLGKTGVGKSATINSIFG+ KS +AF P T
Sbjct: 144 RQDRAKALAREQESSGIPELDFSLRILVLGKTGVGKSATINSIFGQPKSETDAFRPGTDR 203
Query: 508 VKVIAGLVHGVKIRIFDTPGLRSPAIGRT-VNKKTLASIRKSIKKFPPDVVLYVDRLDTH 566
++ + G V GVK+ DTPG + T N+K L SI++ +KK PPDVVLY+DRLD
Sbjct: 204 IEEVMGTVSGVKVTFIDTPGFHPLSSSSTRKNRKILLSIKRYVKKRPPDVVLYLDRLDMI 263
Query: 567 TRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQ 626
++D LL+ +T G+++W N IL +TH+A+ +G +G ++YE +VGQ+ +Q
Sbjct: 264 DMRYSDFSLLQLITEIFGAAIWLNTILVMTHSAATT-EGRNGQSVNYESYVGQRMDVVQH 322
Query: 627 RISQAIGDPHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKILS 686
I QA+ D L N PV LVENH SC+KN GE VLPNG W+PQ + LC K+L
Sbjct: 323 YIHQAVSDTKLEN-----PVLLVENHPSCKKNLAGEYVLPNGVVWKPQFMFLCVCTKVLG 377
Query: 687 EANSVSKSQGPAPKKFFGFRRPAPLSYFLSSLLQSHTHPKLSADQGGDGVESDVELVDFS 746
+ S+ + + R A L + LS L+ +LS+ G D E++ E+
Sbjct: 378 DVQSLLRFRDSIGLGQPSSTRTASLPHLLSVFLRR----RLSS--GAD--ETEKEIDKLL 429
Query: 747 GSDLEDEDEYDQLPPFKPLRKSQVAKLSKEQRKAYFEEYDYRVQLLQKKQWKEEVKRLRE 806
DLE+EDEYDQLP + L KS+ KLSK Q+K Y +E DYR L KKQ KEE +R R+
Sbjct: 430 NLDLEEEDEYDQLPTIRILGKSRFEKLSKSQKKEYLDELDYRETLYLKKQLKEECRRRRD 489
Query: 807 MKKKGYRSNNDDEREDGNLEDDPPATVPAMLPDFALPPSFDGDSPAYRYRLLEATSQLLA 866
K + D E+ D A VP LPD A P SFD D PA+RYR + A Q L
Sbjct: 490 EKLVEEENLEDTEQRD-------QAAVP--LPDMAGPDSFDSDFPAHRYRCVSAGDQWLV 540
Query: 867 RPVLDSPSWDHDCGFDGVSLERNFVIANQFPGAFAFQITKDKKEFNIH--LDSSISAKFA 924
RPV D WD D GFDG+++E I + Q+++DK+ F I +++ + F
Sbjct: 541 RPVYDPQGWDRDVGFDGINIETAAKINRNLFASATGQVSRDKQRFTIQSETNAAYTRNFR 600
Query: 925 ESGSTMAGLDIQTVGRQLAYIFRSETKFRSFKMNKTSGGVSITLLGENVATGLKIEDEIA 984
E ++A +D+Q+ G L Y F+ TK ++FK N T GV +T G G K+ED +
Sbjct: 601 EQTFSVA-VDLQSSGEDLVYSFQGGTKLQTFKHNTTDVGVGLTSFGGKYYVGGKLEDTLL 659
Query: 985 VGKRLVLSGNAGAVQCRGDTAYGANLELRLKDKDFPIGNNNSSLGLSLMNWRGDLNLMAN 1044
VGKR+ L+ NAG ++ G TA G + E ++ +D+P+ N L ++ ++++ +L L
Sbjct: 660 VGKRVKLTANAGQMRGSGQTANGGSFEACIRGRDYPVRNEQIGLTMTALSFKRELVLNYG 719
Query: 1045 VQSQFSVGRSSKMAVCIGLNKQRSGQVTVKLSSSEQLQMALIGIVPIALSGFRSIC 1100
+Q+QF R + + V I +N ++ G++ VKL+SSE ++ALI AL+ F+++
Sbjct: 720 LQTQFRPARGTNIDVNINMNNRKMGKINVKLNSSEHWEIALIS----ALTMFKALV 771
>sp|Q38906|TOC34_ARATH Translocase of chloroplast 34, chloroplastic OS=Arabidopsis
thaliana GN=TOC34 PE=1 SV=2
Length = 313
Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 115/209 (55%), Gaps = 12/209 (5%)
Query: 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLR 529
SL +LV+GK GVGKS+T+NS+ GE+ + ++ F+ +++ G + I DTPGL
Sbjct: 38 SLTVLVMGKGGVGKSSTVNSVIGEKAAAVSTFQSEGLRPTLVSRTRSGFTLNIIDTPGLI 97
Query: 530 SPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQ 589
G VN + + I++ + DV+LYVDRLD + D D ++ ++T + G +W+
Sbjct: 98 E---GGYVNDQAINIIKRFLLNMTIDVLLYVDRLDVYRVDDLDRQVVGAITDAFGKEIWK 154
Query: 590 NAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRISQA--IGDPHLMNLNMMHPVS 647
+ L LTHA PPDG L+Y FV ++S+A+ + I + L ++ PV
Sbjct: 155 KSALVLTHAQFSPPDG-----LNYNHFVSKRSNALLKVIQTGAQLKKQDLQGFSI--PVI 207
Query: 648 LVENHQSCQKNRIGEIVLPNGQSWRPQLL 676
LVEN C KN E +LP G SW P L
Sbjct: 208 LVENSGRCHKNESDEKILPCGTSWIPNLF 236
>sp|Q41009|TOC34_PEA Translocase of chloroplast 34 OS=Pisum sativum GN=TOC34 PE=1 SV=1
Length = 310
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 81/210 (38%), Positives = 112/210 (53%), Gaps = 15/210 (7%)
Query: 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLR 529
SL ILV+GK GVGKS+T+NSI GE +I+ F+ +++ G + I DTPGL
Sbjct: 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLI 98
Query: 530 SPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQ 589
G +N L I+ + DV+LYVDRLD + D+ D + K++T S G +W
Sbjct: 99 E---GGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWN 155
Query: 590 NAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRISQAIG---DPHLMNLNMMHPV 646
AI+ LTHA PPDG L Y+ F ++S A+ Q + D ++ PV
Sbjct: 156 KAIVALTHAQFSPPDG-----LPYDEFFSKRSEALLQVVRSGASLKKDAQASDI----PV 206
Query: 647 SLVENHQSCQKNRIGEIVLPNGQSWRPQLL 676
L+EN C KN E VLPNG +W P L+
Sbjct: 207 VLIENSGRCNKNDSDEKVLPNGIAWIPHLV 236
>sp|O23680|TOC33_ARATH Translocase of chloroplast 33, chloroplastic OS=Arabidopsis
thaliana GN=TOC33 PE=1 SV=1
Length = 297
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 111/218 (50%), Gaps = 23/218 (10%)
Query: 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDT 525
DM+ S+ +LVLGK GVGKS+T+NS+ GE+ ++ F+ +++ + G I I DT
Sbjct: 33 DMN-SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDT 91
Query: 526 PGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS 585
PGL VN + L I+ + DV+LYVDRLD + D D ++ ++T + G
Sbjct: 92 PGLVEAG---YVNHQALELIKGFLVNRTIDVLLYVDRLDVYRVDELDKQVVIAITQTFGK 148
Query: 586 SVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRI-------SQAIGDPHLM 638
+W +L LTHA PPD LSYE F ++S ++ + I Q D +
Sbjct: 149 EIWCKTLLVLTHAQFSPPD-----ELSYETFSSKRSDSLLKTIRAGSKMRKQEFEDSAI- 202
Query: 639 NLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLL 676
V EN C KN E LPNG++W P L+
Sbjct: 203 ------AVVYAENSGRCSKNDKDEKALPNGEAWIPNLV 234
>sp|Q552Z6|GTPA_DICDI GTP-binding protein A OS=Dictyostelium discoideum GN=gtpA PE=3 SV=1
Length = 449
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 143/325 (44%), Gaps = 71/325 (21%)
Query: 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSP 531
N+L+LG+TGVGKS+T+N++FG + +++ E T + +V+G K+ I DTPG
Sbjct: 153 NVLLLGRTGVGKSSTLNTVFGIDIP-VHSSESCTQDPFTYSRVVNGFKLNIIDTPGFLD- 210
Query: 532 AIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNA 591
+ G V+ + I++ + VL+V++ D ++ T LG +W+NA
Sbjct: 211 SQGELVDSNNMIKIQRYLSGKTIHCVLFVEKFTETRFDGAHQLVINQFTEKLGPQLWRNA 270
Query: 592 ILCLTHAASEPPDGPSGLPLSYEVF-----VG-----QQSHAIQQR------ISQAIGD- 634
+ LT+A S PD Y+ F VG ++ A+Q R ++Q D
Sbjct: 271 AVVLTYANSVLPDS------CYDGFDEEDDVGPWKKHYEARALQFRKFFAGILAQLPQDD 324
Query: 635 ---PHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKILSEANSV 691
H+ PV +EN + C++N G+ VL +G P L LL L + +
Sbjct: 325 YPPKHI-------PVYAMENSRRCKRNEQGQRVLIDGT---PCLHLLISGLLKMVD---- 370
Query: 692 SKSQGPAPKKFFGFRRPAPLSYFLSSLLQSHTHPKLSADQGGDGVESDVELVDFSGSDLE 751
PK F L H K +G G ++D EL S ++
Sbjct: 371 -------PKTAF--------------LFMGHLRAKNKPGRGHRGDQNDREL-----SIMD 404
Query: 752 DEDEYDQL---PPFKPLRKSQVAKL 773
+ E +L PPF L K VAK+
Sbjct: 405 NITEILKLFIVPPFDQLGKGTVAKI 429
>sp|Q6P9H5|GIMA6_HUMAN GTPase IMAP family member 6 OS=Homo sapiens GN=GIMAP6 PE=2 SV=1
Length = 292
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 471 LNILVLGKTGVGKSATINSIFGEE--KSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGL 528
L ++++GKTG GKSAT NSI G + +S ++ P T + + + G ++ + DTP +
Sbjct: 41 LRLILMGKTGSGKSATGNSILGRDVFESKLST-RPVTKTSQRRSREWAGKELEVIDTPNI 99
Query: 529 RSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVW 588
SP + V +I S P VL V +L T + D +++ L G V
Sbjct: 100 LSPQVSPEVADAICQAIVLSAPG--PHAVLLVTQLGRFTDE--DQQVVRRLQEVFGVGVL 155
Query: 589 QNAILCLTH 597
+ IL T
Sbjct: 156 GHTILVFTR 164
>sp|Q8K349|GIMA6_MOUSE GTPase IMAP family member 6 OS=Mus musculus GN=Gimap6 PE=2 SV=1
Length = 305
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 471 LNILVLGKTGVGKSATINSIFGEE--KSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGL 528
L +L++GKTG GKSAT NSI G + +S I+A P T++ + G ++ + DTP +
Sbjct: 104 LQLLLVGKTGSGKSATGNSILGRQAFESKISA-RPVTTTFQKGTREFEGKELEVIDTPDI 162
Query: 529 RSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVW 588
SP K + + S P VL V ++ +T + D + + L G+++
Sbjct: 163 FSPQNQPEATAKKICDLLASPG---PHAVLLVIQVGRYTAE--DQAVARCLQEIFGNTIL 217
Query: 589 QNAILCLTH 597
IL T
Sbjct: 218 AYTILVFTR 226
>sp|Q5FVN6|GIMA6_RAT GTPase IMAP family member 6 OS=Rattus norvegicus GN=Gimap6 PE=2
SV=1
Length = 304
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 471 LNILVLGKTGVGKSATINSIFGEE--KSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGL 528
L +L++GKTG GKSAT NSI G + +S I+A P T + + + + G ++ + DTP +
Sbjct: 103 LQLLLVGKTGSGKSATGNSILGRQVFESKISA-RPVTMAFQKGSRELEGKELEVIDTPDI 161
Query: 529 RSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVW 588
SP K + I S P VL V ++ +T + D + L G+ +
Sbjct: 162 LSPQNQPEATAKKICDILASPG---PHAVLLVIQVGRYTTE--DQEAARCLQEIFGNGIL 216
Query: 589 QNAILCLTH 597
IL T
Sbjct: 217 AYTILVFTR 225
>sp|P70224|GIMA1_MOUSE GTPase IMAP family member 1 OS=Mus musculus GN=Gimap1 PE=1 SV=3
Length = 277
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 9/130 (6%)
Query: 471 LNILVLGKTGVGKSATINSIFGEE--KSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGL 528
L ++++G+TG GKSAT NSI G++ S + A P T S + + + G ++ + DTP +
Sbjct: 4 LRLILVGRTGTGKSATGNSILGQKCFLSRLGAV-PVTRSCTLASRMWAGWQVEVVDTPDI 62
Query: 529 RSPAIGRTVNKKTLASIRKSIKKFP-PDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSS 586
S I RT + + + R + P P +L V +L T +D L +K L G
Sbjct: 63 FSSEIPRT-DPGCVETARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVKRL---FGKQ 118
Query: 587 VWQNAILCLT 596
V ++ T
Sbjct: 119 VMARTVVVFT 128
>sp|Q96F15|GIMA5_HUMAN GTPase IMAP family member 5 OS=Homo sapiens GN=GIMAP5 PE=1 SV=1
Length = 307
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Query: 470 SLNILVLGKTGVGKSATINSIFGEE--KSTINAFEPATSSVKVIAGLVHGVKIRIFDTPG 527
+L I+++GKTG GKSAT NSI G+ +S + A + T + +V G +G K+ + DTP
Sbjct: 27 ALRIILVGKTGCGKSATGNSILGQPVFESKLRA-QSVTRTCQVKTGTWNGRKVLVVDTPS 85
Query: 528 L-RSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS 586
+ S A + + K S P V+L V +L T D ++ + G+
Sbjct: 86 IFESQADTQELYKNIGDCYLLSAP--GPHVLLLVIQLGRFTA--QDTVAIRKVKEVFGTG 141
Query: 587 VWQNAILCLTH 597
++ ++ TH
Sbjct: 142 AMRHVVILFTH 152
>sp|Q9WYA4|MNME_THEMA tRNA modification GTPase MnmE OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=mnmE PE=1 SV=1
Length = 450
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTP 526
++ L ++++GK VGKS +N + E+++ + T V ++ G+ RI DT
Sbjct: 208 LNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTA 267
Query: 527 GLRSPA---IGRTVNKKTLASIRKSIKKFPPDVVLYV 560
G+RS + R ++TL I K+ D+VL+V
Sbjct: 268 GVRSETNDLVERLGIERTLQEIEKA------DIVLFV 298
>sp|B1L9N6|MNME_THESQ tRNA modification GTPase MnmE OS=Thermotoga sp. (strain RQ2)
GN=mnmE PE=3 SV=1
Length = 450
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTP 526
++ L ++++GK VGKS +N + E+++ + T V ++ G+ RI DT
Sbjct: 208 LNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTA 267
Query: 527 GLRSPA---IGRTVNKKTLASIRKSIKKFPPDVVLYV 560
G+RS + R ++TL I K+ D+VL+V
Sbjct: 268 GVRSETNDLVERLGIERTLQEIEKA------DIVLFV 298
>sp|Q8NHV1|GIMA7_HUMAN GTPase IMAP family member 7 OS=Homo sapiens GN=GIMAP7 PE=2 SV=1
Length = 300
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 468 DFSLNILVLGKTGVGKSATINSIFGEE--KSTINAFEPATSSVKVIAGLVHGVKIRIFDT 525
D SL I+++GKTG GKSAT N+I GEE S I A + T + + + G + + DT
Sbjct: 6 DRSLRIVLVGKTGSGKSATANTILGEEIFDSRIAA-QAVTKNCQKASREWQGRDLLVVDT 64
Query: 526 PGL 528
PGL
Sbjct: 65 PGL 67
>sp|B9KRT2|DER_RHOSK GTPase Der OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085)
GN=der PE=3 SV=1
Length = 487
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%)
Query: 464 KDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIF 523
K + L I V+G+ GKS IN I GE++ T + HG IRIF
Sbjct: 196 KPTVKHPLQIAVIGRPNAGKSTLINKIIGEDRLLTGPEAGITRDAISVRSEWHGTPIRIF 255
Query: 524 DTPGLRSPA 532
DT G+R A
Sbjct: 256 DTAGMRKKA 264
>sp|Q3J2Y1|DER_RHOS4 GTPase Der OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 /
NCIB 8253 / DSM 158) GN=der PE=3 SV=1
Length = 487
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%)
Query: 464 KDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIF 523
K + L I V+G+ GKS IN I GE++ T + HG IRIF
Sbjct: 196 KPTVKHPLQIAVIGRPNAGKSTLINKIIGEDRLLTGPEAGITRDAISVRSEWHGTPIRIF 255
Query: 524 DTPGLRSPA 532
DT G+R A
Sbjct: 256 DTAGMRKKA 264
>sp|A3PJF0|DER_RHOS1 GTPase Der OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
2.4.9) GN=der PE=3 SV=1
Length = 487
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%)
Query: 464 KDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIF 523
K + L I V+G+ GKS IN I GE++ T + HG IRIF
Sbjct: 196 KPTVKHPLQIAVIGRPNAGKSTLINKIIGEDRLLTGPEAGITRDAISVRSEWHGTPIRIF 255
Query: 524 DTPGLRSPA 532
DT G+R A
Sbjct: 256 DTAGMRKKA 264
>sp|Q99JY3|GIMA4_MOUSE GTPase IMAP family member 4 OS=Mus musculus GN=Gimap4 PE=1 SV=1
Length = 219
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 459 HEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH-- 516
HE+ ++D L I++LGKTG GKS+T NSI GE+ N+ A S KV V
Sbjct: 19 HELGNQDQGIPQLRIVLLGKTGAGKSSTGNSILGEK--VFNSGICAKSITKVCEKRVSTW 76
Query: 517 -GVKIRIFDTPGL 528
G ++ + DTPG+
Sbjct: 77 DGKELVVVDTPGI 89
>sp|A8G2J5|MNME_PROM2 tRNA modification GTPase MnmE OS=Prochlorococcus marinus (strain
MIT 9215) GN=mnmE PE=3 SV=1
Length = 460
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 449 IEAAKRVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSV 508
IE AKR + H ++I ++GKT VGKS+ +N + +EK+ + T V
Sbjct: 215 IENAKRNSYIHN---------GISIALIGKTNVGKSSLLNLLAKKEKAIVTNIPGTTRDV 265
Query: 509 KVIAGLVHGVKIRIFDTPGLR--SPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLD 564
I ++ + ++I DT G+R S I R KK+ I++S D ++Y+ L+
Sbjct: 266 IEINLTINDIPMKIIDTAGIRETSEQIERIGIKKSFRKIKES------DFIIYIYSLE 317
>sp|A0LLH5|MNME_SYNFM tRNA modification GTPase MnmE OS=Syntrophobacter fumaroxidans
(strain DSM 10017 / MPOB) GN=mnmE PE=3 SV=1
Length = 470
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 7/75 (9%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLR- 529
+++++ GK VGKS+ +N++ G +++ + F T V L+ G+ +R+ DT GLR
Sbjct: 232 VSLVLAGKPNVGKSSLLNALVGRDRAIVTPFPGTTRDVVEDTFLLSGILVRVLDTAGLRH 291
Query: 530 ------SPAIGRTVN 538
S I RT+
Sbjct: 292 DPDEIESFGIARTIQ 306
>sp|A7H4F3|ERA_CAMJD GTPase Era OS=Campylobacter jejuni subsp. doylei (strain ATCC
BAA-1458 / RM4099 / 269.97) GN=era PE=3 SV=1
Length = 291
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 475 VLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIF-DTPGLRSPAI 533
++G+T GKS INS+ E+ + ++ + AT K+ A ++H IF DTPGL
Sbjct: 8 IIGRTNAGKSTLINSLLEEKIALVSHKQNATRR-KIKAIVIHEKNQIIFIDTPGLHES-- 64
Query: 534 GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDL 573
G T N+ + S KS++ DV+L+V + T+D+ +
Sbjct: 65 GATFNQLLVQSAIKSME--DCDVILFVASVFDSTKDYENF 102
>sp|A5IKF4|MNME_THEP1 tRNA modification GTPase MnmE OS=Thermotoga petrophila (strain
RKU-1 / ATCC BAA-488 / DSM 13995) GN=mnmE PE=3 SV=1
Length = 450
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTP 526
++ ++++GK VGKS +N + E+++ + T V ++ G+ RI DT
Sbjct: 208 LNRGFRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTA 267
Query: 527 GLRSPA---IGRTVNKKTLASIRKSIKKFPPDVVLYV 560
G+RS + R ++TL I K+ D+VL+V
Sbjct: 268 GVRSETNDLVERLGIERTLQEIEKA------DIVLFV 298
>sp|A1VZ20|ERA_CAMJJ GTPase Era OS=Campylobacter jejuni subsp. jejuni serotype O:23/36
(strain 81-176) GN=era PE=3 SV=1
Length = 291
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 475 VLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIF-DTPGLRSPAI 533
++G+T GKS INS+ E+ + ++ + AT K+ A ++H IF DTPGL
Sbjct: 8 IIGRTNAGKSTLINSLLEEKIALVSHKQNATRR-KIKAIVMHEKNQIIFIDTPGLHES-- 64
Query: 534 GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDL 573
G T+N+ + S KSI DV+L+V + T+D+ +
Sbjct: 65 GATLNQLLVQSAIKSIG--DCDVILFVASVFDSTKDYENF 102
>sp|A5G9V3|MNME_GEOUR tRNA modification GTPase MnmE OS=Geobacter uraniireducens (strain
Rf4) GN=mnmE PE=3 SV=1
Length = 455
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 85/191 (44%), Gaps = 12/191 (6%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRS 530
+++++ GK VGKS+ +N++ E+++ + + T + + G+ +++ DT G+R
Sbjct: 221 VSVVIAGKPNVGKSSLLNTLLREKRAIVTSVPGTTRDLIEEVVTIKGLPVKLLDTAGIRE 280
Query: 531 PAIGRTVNKKTLASIRKSIKKFP-PDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVW 588
++ I+ S+ K P D+VL++ +D+ D +L L V
Sbjct: 281 SD-----DRVEREGIKLSLDKIPSADLVLFI--IDSSLPFSSEDQAILDVLAPCNFIVVM 333
Query: 589 QNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRISQAIGDPHLMNLNMMHPVSL 648
+ +C + + PD P ++ G A+Q I +A H ++ VS
Sbjct: 334 NKSDICRSFDMPQLPDVPI---IAVSTLTGDGIDALQDAIFEAFIHNHAVDSREYVAVSQ 390
Query: 649 VENHQSCQKNR 659
+ + QK+R
Sbjct: 391 ARHRDALQKSR 401
>sp|Q834T4|DER_ENTFA GTPase Der OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=der PE=3 SV=1
Length = 436
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 450 EAAKRVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SV 508
EA K E ED+D + FSL +G+ VGKS+ IN+I GE++ ++ E T ++
Sbjct: 158 EAVKHFPNTSEEEDEDTIKFSL----IGRPNVGKSSLINAILGEDRVIVSDIEGTTRDAI 213
Query: 509 KVIAGLVHGVKIRIFDTPGLRSPA-IGRTVNKKTLASIRKSIKKFPPDVVLYV 560
G K + DT G+R + + K ++ ++I++ D+VL V
Sbjct: 214 DTYFESEEGQKFLMIDTAGMRKRGKVYESTEKYSVMRAMRAIER--SDIVLMV 264
>sp|A5EI59|DER_BRASB GTPase Der OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=der PE=3 SV=1
Length = 456
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 4/107 (3%)
Query: 457 EQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH 516
++HE D++ + + ++G+ GKS IN + GEE+ + + E T+ + + +
Sbjct: 171 DEHEETDEERAARPIRVAIVGRPNAGKSTLINHLLGEER-LLTSPEAGTTRDSIAVEIEY 229
Query: 517 -GVKIRIFDTPGLRSPA-IGRTVNKKTLASIRKSIKKFPPDVVLYVD 561
G RIFDT GLR + I + K ++A +++ +F VVL +D
Sbjct: 230 KGRGFRIFDTAGLRRRSRIEEKLEKLSVADALRAV-RFAEVVVLMMD 275
>sp|A1B4S0|DER_PARDP GTPase Der OS=Paracoccus denitrificans (strain Pd 1222) GN=der PE=3
SV=1
Length = 489
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 15/156 (9%)
Query: 413 LRLVQRLGHSFDDSVVAQVLYRLALALGGHSSQAVSIEAAKRVAEQHEIEDKDDMDFS-- 470
LR+ G DD LYR AL + +A +++ A E D + D+
Sbjct: 142 LRISAEHGEGMDD------LYR-ALVPLAEAFEAQNVQQAPETDVAVEDGDDETEDWRPS 194
Query: 471 ----LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTP 526
L I V+G+ GKS IN I GE++ T ++ G +RIFDT
Sbjct: 195 ESKPLQIAVIGRPNAGKSTLINKILGEDRLLTGPEAGITRDSISVSTNFMGTPVRIFDTA 254
Query: 527 GLRSPA-IGRTVNKKTLASIRKSIKKFPPDVVLYVD 561
G+R A + V K ++A +++ +F VV+ +D
Sbjct: 255 GMRKKARVTDKVEKLSVADGLRAV-RFAEVVVVLLD 289
>sp|Q477Q5|MNME_DECAR tRNA modification GTPase MnmE OS=Dechloromonas aromatica (strain
RCB) GN=mnmE PE=3 SV=1
Length = 448
Score = 42.0 bits (97), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 92/214 (42%), Gaps = 16/214 (7%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRS 530
L++++ G+ VGKS+ +N + G++ + + T + G+ + I DT GLR
Sbjct: 215 LHVVLAGQPNVGKSSLLNRLAGDDLAIVTPIAGTTRDALRSTIQIEGIPLHIIDTAGLRE 274
Query: 531 PAIGRTVNKKTLASIRKSIKKFP-PDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVW 588
T ++ I +S K+ DVVL + +D T +D +L L L
Sbjct: 275 -----TDDEVEKIGIERSWKEIERSDVVLLL--VDARTGVSESDREILARLPDRLQRITV 327
Query: 589 QNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRISQAIG-----DPHLMNLNMM 643
N I LTH A+E D +G +S Q ++Q + + G D + +
Sbjct: 328 YNKI-DLTHRAAERHDEANGTAISLSAKANQGIELLRQELLRIAGWHQAEDVFIARERHL 386
Query: 644 HPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLL 677
+S + H + +N + E LP + + +L L
Sbjct: 387 RALSAAQEHVAAARNVV-EGALPALELFAEELRL 419
>sp|Q8EW66|ERA_MYCPE GTPase Era OS=Mycoplasma penetrans (strain HF-2) GN=era PE=3 SV=2
Length = 298
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 475 VLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVHGVKIRIFDTPGLRSP- 531
++GK VGKS +N+IF E + I++ +P T+ +++ + I DTPGL +P
Sbjct: 8 IVGKPNVGKSTLLNNIF-EREVVISSNKPQTTRNMIEISYDSIEDCVINFIDTPGLHNPK 66
Query: 532 -AIGRTVNKKTLASIRKSIKKFPPDVVLYVDRL--DTHTRDHNDLPLLKSLTSS 582
+ +N + AS++KS D+VL++ L D + D L +LK +
Sbjct: 67 NKLDLFLNSQVKASLKKS------DLVLFLFDLSRDFDSEDEECLKVLKDFNCN 114
>sp|Q5HVB3|ERA_CAMJR GTPase Era OS=Campylobacter jejuni (strain RM1221) GN=era PE=3 SV=1
Length = 291
Score = 41.6 bits (96), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 475 VLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIF-DTPGLRSPAI 533
++G+T GKS INS+ E+ + ++ + AT K+ A ++H IF DTPGL
Sbjct: 8 IIGRTNAGKSTLINSLLEEKIALVSHKQNATRR-KIKAIVMHEKNQIIFIDTPGLHES-- 64
Query: 534 GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDL 573
G T+N+ + S KS+ DV+L+V + T+D+ +
Sbjct: 65 GATLNQLLVQSAIKSMG--DCDVILFVASVFDSTKDYENF 102
>sp|A8FL79|ERA_CAMJ8 GTPase Era OS=Campylobacter jejuni subsp. jejuni serotype O:6
(strain 81116 / NCTC 11828) GN=era PE=3 SV=1
Length = 291
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 475 VLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIF-DTPGLRSPAI 533
++G+T GKS INS+ E+ + ++ + AT K+ A ++H IF DTPGL
Sbjct: 8 IIGRTNAGKSTLINSLLEEKIALVSHKQNATRR-KIKAIVMHEKNQIIFIDTPGLHES-- 64
Query: 534 GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDL 573
G T+N+ + S KS+ DV+L+V + T+D+ +
Sbjct: 65 GATLNQLLVQSAIKSMG--DCDVILFVASVFDSTKDYENF 102
>sp|Q9PHL1|ERA_CAMJE GTPase Era OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=era PE=3 SV=1
Length = 291
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 475 VLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIF-DTPGLRSPAI 533
++G+T GKS INS+ E+ + ++ + AT K+ A ++H IF DTPGL
Sbjct: 8 IIGRTNAGKSTLINSLLEEKIALVSHKQNATRR-KIKAIVMHEKNQIIFIDTPGLHES-- 64
Query: 534 GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDL 573
G T+N+ + S KS+ DV+L+V + T+D+ +
Sbjct: 65 GATLNQLLVQSAIKSMG--DCDVILFVASVFDSTKDYENF 102
>sp|A7IIE4|DER_XANP2 GTPase Der OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 /
Py2) GN=der PE=3 SV=1
Length = 458
Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRS 530
+ + VLG+ GKS IN + GE++ T + G K+ +FDT GLR
Sbjct: 194 IKVTVLGRPNAGKSTLINRLLGEDRLLTGPEAGITRDSISVEVTYAGAKLEVFDTAGLRK 253
Query: 531 PA-IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDL 573
A I + K + A +++ KF VVL VD TH + DL
Sbjct: 254 RARIEDKLEKLSAADALRAM-KFAEVVVLLVD--ATHPFEEQDL 294
>sp|A5GW82|MNME_SYNR3 tRNA modification GTPase MnmE OS=Synechococcus sp. (strain RCC307)
GN=mnmE PE=3 SV=1
Length = 453
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRS 530
L + ++G+ VGKS+ +N++ G E++ + T + ++ GV I + DT G+RS
Sbjct: 225 LRVAIIGRPNVGKSSLLNALSGHERAIVTDLPGTTRDLLDYDLVLQGVPITLLDTAGIRS 284
Query: 531 PA 532
A
Sbjct: 285 TA 286
>sp|A9B567|DER_HERA2 GTPase Der OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM
785) GN=der PE=3 SV=1
Length = 455
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 456 AEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLV 515
A Q E ED D SL I ++G+ VGKS+ +N + GEE+ ++ P T+ + L
Sbjct: 172 AGQEEEED----DNSLKIAIVGRPNVGKSSLLNKLVGEERVVVSNI-PGTTRDSIDTKLT 226
Query: 516 H-GVKIRIFDTPGLR 529
+ G+ I + DT G+R
Sbjct: 227 YKGIPITLIDTAGIR 241
>sp|Q39PQ9|MNME_GEOMG tRNA modification GTPase MnmE OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=mnmE PE=3 SV=1
Length = 457
Score = 41.2 bits (95), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRS 530
+++L+ GK VGKS+ +N++ E+++ + + T + V G+ +R+ DT G+R
Sbjct: 222 VSVLIAGKPNVGKSSLLNTLLQEKRAIVTSVPGTTRDIIEEVVNVRGLPLRMLDTAGIRE 281
Query: 531 PAIGRTVNKKTLASIRKSIKKFP-PDVVLYV 560
T + +R +++K P D++L+V
Sbjct: 282 -----TEDVVEQEGVRLTLEKIPQADLILFV 307
>sp|A4WUI6|DER_RHOS5 GTPase Der OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
2.4.3) GN=der PE=3 SV=1
Length = 487
Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRS 530
L I V+G+ GKS IN I GE++ T + G IRIFDT G+R
Sbjct: 203 LQIAVIGRPNAGKSTLINKIIGEDRLLTGPEAGITRDAISVRSEWQGTPIRIFDTAGMRK 262
Query: 531 PA 532
A
Sbjct: 263 KA 264
>sp|B1I6S2|MNME_DESAP tRNA modification GTPase MnmE OS=Desulforudis audaxviator (strain
MP104C) GN=mnmE PE=3 SV=1
Length = 461
Score = 40.8 bits (94), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRS 530
L + ++GK VGKS+ +N++ E+++ + T V + G+ +R+ DT GLR
Sbjct: 224 LGVAIVGKPNVGKSSLLNALLREKRAIVTDVPGTTRDVIEETVNIRGLPVRLLDTAGLRE 283
Query: 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYV 560
A TV + +A R ++ D+VL V
Sbjct: 284 TA--DTVERLGVARTRDAVAG--ADMVLVV 309
>sp|B9LBT6|DER_CHLSY GTPase Der OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637
/ Y-400-fl) GN=der PE=3 SV=1
Length = 449
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLV-HGVKIRIFDTPGLR 529
L I ++G+ VGKS+ +N + G+E+S +++ P T+ + + HG I + DT G+R
Sbjct: 183 LRIAIVGRPNVGKSSLLNRLLGQERSVVSSI-PGTTRDPIDTTITYHGEPITLIDTAGIR 241
Query: 530 SPA-IGRTVNKKTLASIRKSIKK 551
I R + K ++ ++I++
Sbjct: 242 RAGKIERGIEKYSVLRTLRAIER 264
>sp|A9WHH9|DER_CHLAA GTPase Der OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635
/ J-10-fl) GN=der PE=3 SV=1
Length = 449
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLV-HGVKIRIFDTPGLR 529
L I ++G+ VGKS+ +N + G+E+S +++ P T+ + + HG I + DT G+R
Sbjct: 183 LRIAIVGRPNVGKSSLLNRLLGQERSVVSSI-PGTTRDPIDTTITYHGEPITLIDTAGIR 241
Query: 530 SPA-IGRTVNKKTLASIRKSIKK 551
I R + K ++ ++I++
Sbjct: 242 RAGKIERGIEKYSVLRTLRAIER 264
>sp|Q9KVY5|MNME_VIBCH tRNA modification GTPase MnmE OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=mnmE PE=3
SV=2
Length = 453
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 27/196 (13%)
Query: 448 SIEAAKRVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS 507
++ A +R A Q I M + +++ G+ GKS+ +N++ G+E + + T
Sbjct: 198 NLAAVRREANQGAI-----MREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRD 252
Query: 508 VKVIAGLVHGVKIRIFDTPGLR--SPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDT 565
V + G+ + I DT GLR S A+ + ++ IR++ + V+ VD T
Sbjct: 253 VLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADR-----VLFMVDGTTT 307
Query: 566 HTRDHNDL--PLLKSLTSSLGSSVWQNAI------LCLTHAASEPPDGPSGLPLSYEVFV 617
D D+ + L ++G +V +N L + H + P+ + LS +
Sbjct: 308 EATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHV-----NQPTLIRLSAK--T 360
Query: 618 GQQSHAIQQRISQAIG 633
GQ A++Q + + +G
Sbjct: 361 GQGVDALRQHLKECMG 376
>sp|Q8YFH2|DER_BRUME GTPase Der OS=Brucella melitensis biotype 1 (strain 16M / ATCC
23456 / NCTC 10094) GN=der PE=3 SV=1
Length = 483
Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 460 EIEDKD-------DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIA 512
+IED D D L I ++G+ GKS IN++ GE++ + E + + A
Sbjct: 194 DIEDPDAEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLGEDR-LLTGPEAGITRDSISA 252
Query: 513 GL-VHGVKIRIFDTPGLRSPA-IGRTVNKKTLASIRKSIKKFPPDVVLYVD 561
HG KI++FDT G+R A + + K ++A ++I +F V++ +D
Sbjct: 253 DWEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADSLRAI-RFAEVVIIVLD 302
>sp|C0RH89|DER_BRUMB GTPase Der OS=Brucella melitensis biotype 2 (strain ATCC 23457)
GN=der PE=3 SV=1
Length = 483
Score = 40.8 bits (94), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 460 EIEDKD-------DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIA 512
+IED D D L I ++G+ GKS IN++ GE++ + E + + A
Sbjct: 194 DIEDPDAEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLGEDR-LLTGPEAGITRDSISA 252
Query: 513 GL-VHGVKIRIFDTPGLRSPA-IGRTVNKKTLASIRKSIKKFPPDVVLYVD 561
HG KI++FDT G+R A + + K ++A ++I +F V++ +D
Sbjct: 253 DWEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADSLRAI-RFAEVVIIVLD 302
>sp|A7HYV8|DER_PARL1 GTPase Der OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023
/ NCIMB 13966) GN=der PE=3 SV=1
Length = 473
Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 8/111 (7%)
Query: 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDT 525
D++ L + ++G+ VGKS +N + GE++ T I G +++++DT
Sbjct: 198 DLEAPLRVAIIGRPNVGKSTLVNQLLGEDRMLTGPEAGITRDSIGIEWEWRGRRVKLWDT 257
Query: 526 PGLRSPA-IGRTVNKKTLASIRKSIKKFPPDVVLYVD------RLDTHTRD 569
G+R A + + K ++A +++ +F VV+ +D R D H D
Sbjct: 258 AGMRRRARVTEKLEKLSVADTLRAV-RFAEVVVILLDATQPFERQDLHIAD 307
>sp|A9AH00|DER_BURM1 GTPase Der OS=Burkholderia multivorans (strain ATCC 17616 / 249)
GN=der PE=3 SV=1
Length = 445
Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 456 AEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFE-PATSSVKVIAGL 514
A+Q E ED +D + I ++G+ VGKS +N++ GE++ + AF+ P T+ +
Sbjct: 165 ADQPEEEDDNDPSRGIKIAIVGRPNVGKSTLVNALIGEDR--VIAFDMPGTTRDSIYVDF 222
Query: 515 -VHGVKIRIFDTPGLRSP-----AIGRTVNKKTLASI 545
+G K + DT GLR AI + KTL SI
Sbjct: 223 ERNGKKYTLIDTAGLRRSGKVFEAIEKFSVVKTLQSI 259
>sp|A5F485|MNME_VIBC3 tRNA modification GTPase MnmE OS=Vibrio cholerae serotype O1
(strain ATCC 39541 / Ogawa 395 / O395) GN=mnmE PE=3 SV=2
Length = 453
Score = 40.8 bits (94), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 27/196 (13%)
Query: 448 SIEAAKRVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS 507
++ A +R A Q I M + +++ G+ GKS+ +N++ G+E + + T
Sbjct: 198 NLAAVRREANQGAI-----MREGMKVVIAGRPNAGKSSLLNALSGKESAIVTDIAGTTRD 252
Query: 508 VKVIAGLVHGVKIRIFDTPGLR--SPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDT 565
V + G+ + I DT GLR S A+ + ++ IR++ + V+ VD T
Sbjct: 253 VLREHIHIDGMPLHIIDTAGLRDASDAVEKIGIERAWEEIRQADR-----VLFMVDGTTT 307
Query: 566 HTRDHNDL--PLLKSLTSSLGSSVWQNAI------LCLTHAASEPPDGPSGLPLSYEVFV 617
D D+ + L ++G +V +N L + H + P+ + LS +
Sbjct: 308 EATDPQDIWPDFVDKLPENIGITVIRNKADQTGEPLGICHV-----NQPTLIRLSAK--T 360
Query: 618 GQQSHAIQQRISQAIG 633
GQ A++Q + + +G
Sbjct: 361 GQGVDALRQHLKECMG 376
>sp|A7ZAW1|MNME_BACA2 tRNA modification GTPase MnmE OS=Bacillus amyloliquefaciens (strain
FZB42) GN=mnmE PE=3 SV=1
Length = 459
Score = 40.4 bits (93), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 449 IEAAKRVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSV 508
IEA R +EQ +I + L+ +++G+ VGKS+ +NS+ E K+ + T V
Sbjct: 205 IEALLRTSEQGKI-----LREGLSTVIIGRPNVGKSSLLNSLVHETKAIVTDIPGTTRDV 259
Query: 509 KVIAGLVHGVKIRIFDTPGLR 529
V GV +R+ DT G+R
Sbjct: 260 IEEYVNVRGVPLRLVDTAGIR 280
>sp|B0CK66|DER_BRUSI GTPase Der OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=der
PE=3 SV=1
Length = 483
Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 11/111 (9%)
Query: 460 EIEDKD-------DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIA 512
+IED D D L I ++G+ GKS IN++ GE++ + E + + A
Sbjct: 194 DIEDPDAEEIPAYDATKPLRIAIVGRPNAGKSTLINTMLGEDR-LLTGPEAGITRDSISA 252
Query: 513 GL-VHGVKIRIFDTPGLRSPA-IGRTVNKKTLASIRKSIKKFPPDVVLYVD 561
HG KI++FDT G+R A + + K ++A ++I +F V++ +D
Sbjct: 253 DWEWHGRKIKLFDTAGMRRKARVQEKLEKLSVADGLRAI-RFAEVVIIVLD 302
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.130 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,383,233
Number of Sequences: 539616
Number of extensions: 17957847
Number of successful extensions: 57657
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 1102
Number of HSP's that attempted gapping in prelim test: 53296
Number of HSP's gapped (non-prelim): 2521
length of query: 1109
length of database: 191,569,459
effective HSP length: 128
effective length of query: 981
effective length of database: 122,498,611
effective search space: 120171137391
effective search space used: 120171137391
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)