Query 036930
Match_columns 1109
No_of_seqs 490 out of 3288
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 06:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036930.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036930hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00993 3a0901s04IAP86 chlor 100.0 2E-214 5E-219 1846.1 64.3 751 347-1107 4-760 (763)
2 PF11886 DUF3406: Domain of un 100.0 4E-128 9E-133 1019.6 25.8 273 828-1100 1-273 (273)
3 cd01853 Toc34_like Toc34-like 100.0 4.1E-34 8.8E-39 309.0 19.8 243 445-692 6-248 (249)
4 TIGR00991 3a0901s02IAP34 GTP-b 100.0 5E-30 1.1E-34 283.8 19.1 202 468-677 36-237 (313)
5 COG0486 ThdF Predicted GTPase 100.0 5E-27 1.1E-31 268.3 22.2 287 388-699 140-444 (454)
6 PF04548 AIG1: AIG1 family; I 99.9 2.7E-26 5.8E-31 241.5 13.9 198 471-693 1-206 (212)
7 cd01852 AIG1 AIG1 (avrRpt2-ind 99.9 3.5E-24 7.6E-29 221.4 14.8 183 471-669 1-188 (196)
8 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.1E-20 6.7E-25 215.8 24.1 284 388-700 130-433 (442)
9 PRK05291 trmE tRNA modificatio 99.9 1.3E-20 2.8E-25 219.3 20.6 286 388-699 138-439 (449)
10 PF05049 IIGP: Interferon-indu 99.8 7.1E-22 1.5E-26 224.1 -5.8 300 448-776 16-332 (376)
11 KOG1191 Mitochondrial GTPase [ 99.8 1.7E-17 3.7E-22 190.4 19.2 293 388-698 190-520 (531)
12 COG1160 Predicted GTPases [Gen 99.6 9.1E-16 2E-20 176.2 12.4 198 396-603 72-304 (444)
13 PF02421 FeoB_N: Ferrous iron 99.6 8.6E-16 1.9E-20 156.6 9.9 120 471-604 1-121 (156)
14 COG1159 Era GTPase [General fu 99.6 2.7E-15 5.7E-20 165.0 13.6 123 470-603 6-129 (298)
15 TIGR03156 GTP_HflX GTP-binding 99.6 2.3E-14 4.9E-19 162.8 19.0 195 388-602 112-315 (351)
16 PF01926 MMR_HSR1: 50S ribosom 99.6 1E-14 2.2E-19 138.4 12.9 115 472-597 1-116 (116)
17 COG1160 Predicted GTPases [Gen 99.6 5.5E-15 1.2E-19 169.9 13.1 122 471-602 4-126 (444)
18 TIGR00436 era GTP-binding prot 99.5 2.9E-13 6.3E-18 147.7 17.5 119 471-601 1-120 (270)
19 COG1084 Predicted GTPase [Gene 99.5 1.1E-12 2.4E-17 145.9 21.5 125 469-602 167-294 (346)
20 cd04163 Era Era subfamily. Er 99.5 1.4E-12 3.1E-17 126.1 17.7 121 470-601 3-124 (168)
21 PRK00089 era GTPase Era; Revie 99.5 7.3E-13 1.6E-17 145.3 17.7 121 470-601 5-126 (292)
22 KOG1490 GTP-binding protein CR 99.5 1.2E-13 2.7E-18 158.9 11.1 264 457-764 155-428 (620)
23 COG3596 Predicted GTPase [Gene 99.5 8.2E-13 1.8E-17 144.2 16.1 153 468-630 37-195 (296)
24 cd04164 trmE TrmE (MnmE, ThdF, 99.5 1.2E-12 2.6E-17 126.7 14.8 120 470-602 1-121 (157)
25 PRK12298 obgE GTPase CgtA; Rev 99.4 1.9E-12 4.2E-17 149.0 15.6 124 471-602 160-289 (390)
26 cd01850 CDC_Septin CDC/Septin. 99.4 3.9E-12 8.4E-17 140.2 17.2 128 469-602 3-157 (276)
27 PRK15494 era GTPase Era; Provi 99.4 5.6E-12 1.2E-16 142.6 18.0 122 469-601 51-173 (339)
28 cd01895 EngA2 EngA2 subfamily. 99.4 1.1E-11 2.5E-16 121.3 17.6 123 470-602 2-127 (174)
29 cd01898 Obg Obg subfamily. Th 99.4 2.6E-12 5.5E-17 127.4 13.1 123 472-602 2-128 (170)
30 cd01894 EngA1 EngA1 subfamily. 99.4 3.3E-12 7.2E-17 123.9 13.5 118 474-602 1-119 (157)
31 TIGR03598 GTPase_YsxC ribosome 99.4 1.1E-11 2.4E-16 126.3 17.7 125 468-602 16-143 (179)
32 TIGR03594 GTPase_EngA ribosome 99.4 2.6E-12 5.7E-17 147.8 14.6 120 472-602 1-121 (429)
33 COG0218 Predicted GTPase [Gene 99.4 3.5E-12 7.6E-17 134.3 13.1 126 469-603 23-150 (200)
34 cd04104 p47_IIGP_like p47 (47- 99.4 8.5E-12 1.8E-16 130.1 14.9 120 470-604 1-123 (197)
35 PF00735 Septin: Septin; Inte 99.3 9.8E-12 2.1E-16 137.6 13.8 128 469-602 3-156 (281)
36 PRK00093 GTP-binding protein D 99.3 1.7E-11 3.6E-16 141.8 15.8 124 468-601 171-297 (435)
37 PRK12299 obgE GTPase CgtA; Rev 99.3 1.1E-11 2.4E-16 140.2 13.5 127 468-602 156-285 (335)
38 PRK00093 GTP-binding protein D 99.3 1.7E-11 3.8E-16 141.6 14.9 120 471-601 2-122 (435)
39 TIGR03594 GTPase_EngA ribosome 99.3 3.4E-11 7.4E-16 138.7 16.8 124 468-601 170-296 (429)
40 PRK03003 GTP-binding protein D 99.3 2.9E-11 6.2E-16 142.2 15.3 124 469-602 210-336 (472)
41 PRK03003 GTP-binding protein D 99.3 3.2E-11 6.9E-16 141.8 15.6 122 469-601 37-159 (472)
42 cd01897 NOG NOG1 is a nucleola 99.3 3.3E-11 7.1E-16 119.6 13.3 123 472-602 2-127 (168)
43 cd01879 FeoB Ferrous iron tran 99.3 2.2E-11 4.7E-16 118.9 11.6 114 475-602 1-115 (158)
44 PRK12296 obgE GTPase CgtA; Rev 99.3 5.3E-11 1.2E-15 140.6 16.7 128 467-601 156-297 (500)
45 PRK00454 engB GTP-binding prot 99.3 1.6E-10 3.6E-15 117.8 17.9 126 468-602 22-149 (196)
46 PRK12297 obgE GTPase CgtA; Rev 99.3 5.9E-11 1.3E-15 138.2 16.4 123 471-600 159-286 (424)
47 KOG1547 Septin CDC10 and relat 99.3 6.7E-11 1.4E-15 126.9 15.3 129 468-602 44-198 (336)
48 cd01881 Obg_like The Obg-like 99.3 8.9E-12 1.9E-16 123.7 7.9 120 475-602 1-134 (176)
49 cd01878 HflX HflX subfamily. 99.3 8.6E-11 1.9E-15 121.6 15.5 125 470-602 41-167 (204)
50 PRK11058 GTPase HflX; Provisio 99.3 1.3E-10 2.8E-15 135.5 18.6 123 471-602 198-323 (426)
51 TIGR02729 Obg_CgtA Obg family 99.3 6.9E-11 1.5E-15 133.5 15.6 127 468-602 155-287 (329)
52 cd04171 SelB SelB subfamily. 99.2 3.4E-10 7.3E-15 110.9 17.9 114 471-601 1-117 (164)
53 PRK09518 bifunctional cytidyla 99.2 8.5E-11 1.9E-15 144.6 15.9 121 470-601 275-396 (712)
54 KOG1423 Ras-like GTPase ERA [C 99.2 6.4E-11 1.4E-15 130.8 12.0 128 467-602 69-199 (379)
55 PRK09518 bifunctional cytidyla 99.2 1.2E-10 2.7E-15 143.2 15.5 124 469-602 449-575 (712)
56 COG5019 CDC3 Septin family pro 99.2 2.2E-10 4.9E-15 129.4 15.8 131 468-604 21-178 (373)
57 cd00880 Era_like Era (E. coli 99.2 1.7E-10 3.6E-15 109.6 12.2 117 475-602 1-118 (163)
58 cd01876 YihA_EngB The YihA (En 99.2 1.1E-09 2.3E-14 106.6 17.7 121 473-602 2-124 (170)
59 PRK09554 feoB ferrous iron tra 99.2 2.1E-10 4.5E-15 142.1 15.5 120 470-602 3-126 (772)
60 PRK04213 GTP-binding protein; 99.2 3.5E-10 7.5E-15 116.7 13.6 123 469-601 8-143 (201)
61 cd00154 Rab Rab family. Rab G 99.2 6.4E-10 1.4E-14 106.9 14.5 115 471-601 1-118 (159)
62 KOG2655 Septin family protein 99.1 6.2E-10 1.4E-14 126.4 16.3 131 468-604 19-174 (366)
63 cd01861 Rab6 Rab6 subfamily. 99.1 5.4E-10 1.2E-14 109.9 12.9 115 471-602 1-119 (161)
64 COG0370 FeoB Fe2+ transport sy 99.1 4.2E-10 9.1E-15 135.0 14.2 122 470-605 3-125 (653)
65 smart00175 RAB Rab subfamily o 99.1 3.4E-09 7.3E-14 104.2 16.3 117 471-602 1-119 (164)
66 cd01896 DRG The developmentall 99.1 1.3E-09 2.9E-14 117.2 14.6 86 472-564 2-88 (233)
67 cd04119 RJL RJL (RabJ-Like) su 99.1 8.6E-10 1.9E-14 108.3 12.0 118 471-602 1-124 (168)
68 cd01887 IF2_eIF5B IF2/eIF5B (i 99.1 1.4E-09 3E-14 107.5 13.0 110 472-601 2-115 (168)
69 cd04113 Rab4 Rab4 subfamily. 99.1 4E-09 8.8E-14 104.2 16.1 117 471-602 1-119 (161)
70 cd01864 Rab19 Rab19 subfamily. 99.1 4.4E-09 9.6E-14 104.7 16.5 118 470-602 3-122 (165)
71 cd01866 Rab2 Rab2 subfamily. 99.1 1E-09 2.2E-14 110.2 11.8 118 470-602 4-123 (168)
72 cd01889 SelB_euk SelB subfamil 99.0 4.1E-09 8.9E-14 108.7 15.8 113 471-602 1-134 (192)
73 PF00350 Dynamin_N: Dynamin fa 99.0 4.9E-10 1.1E-14 112.1 8.6 112 473-598 1-168 (168)
74 TIGR00231 small_GTP small GTP- 99.0 6.4E-09 1.4E-13 98.9 15.7 116 471-602 2-122 (161)
75 cd04142 RRP22 RRP22 subfamily. 99.0 1.6E-09 3.5E-14 113.5 12.5 126 471-602 1-130 (198)
76 cd04160 Arfrp1 Arfrp1 subfamil 99.0 1.3E-09 2.8E-14 108.1 11.1 116 472-602 1-121 (167)
77 cd00881 GTP_translation_factor 99.0 2.1E-09 4.6E-14 107.7 12.9 113 472-602 1-128 (189)
78 cd04145 M_R_Ras_like M-Ras/R-R 99.0 2.1E-09 4.5E-14 105.9 12.3 118 470-602 2-121 (164)
79 COG1163 DRG Predicted GTPase [ 99.0 7.8E-09 1.7E-13 115.5 18.1 60 471-532 64-124 (365)
80 cd01860 Rab5_related Rab5-rela 99.0 2.1E-09 4.5E-14 106.0 11.9 117 471-602 2-120 (163)
81 cd04123 Rab21 Rab21 subfamily. 99.0 3.4E-09 7.3E-14 103.5 13.0 116 471-602 1-119 (162)
82 cd04140 ARHI_like ARHI subfami 99.0 1.9E-09 4.1E-14 107.7 11.4 118 471-602 2-122 (165)
83 cd04157 Arl6 Arl6 subfamily. 99.0 2.2E-09 4.7E-14 105.5 11.7 117 472-602 1-118 (162)
84 cd01863 Rab18 Rab18 subfamily. 99.0 2.2E-09 4.9E-14 105.8 11.5 117 471-601 1-119 (161)
85 cd01868 Rab11_like Rab11-like. 99.0 4E-09 8.7E-14 104.6 13.3 117 471-602 4-122 (165)
86 cd04138 H_N_K_Ras_like H-Ras/N 99.0 3.3E-09 7E-14 103.6 12.0 117 471-602 2-120 (162)
87 cd00876 Ras Ras family. The R 99.0 6E-09 1.3E-13 101.5 13.9 116 472-602 1-118 (160)
88 cd04154 Arl2 Arl2 subfamily. 99.0 4.9E-09 1.1E-13 105.7 13.3 115 469-602 13-129 (173)
89 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.0 4.9E-09 1.1E-13 104.3 13.0 117 471-602 3-121 (166)
90 cd04101 RabL4 RabL4 (Rab-like4 99.0 7.8E-09 1.7E-13 102.2 14.0 116 471-602 1-121 (164)
91 cd04136 Rap_like Rap-like subf 99.0 3.7E-09 8E-14 104.0 11.2 117 471-602 2-120 (163)
92 smart00053 DYNc Dynamin, GTPas 99.0 1.2E-08 2.7E-13 111.0 16.3 124 472-602 28-206 (240)
93 cd04106 Rab23_lke Rab23-like s 99.0 6E-09 1.3E-13 102.6 12.7 115 471-602 1-120 (162)
94 COG2262 HflX GTPases [General 99.0 1.5E-08 3.3E-13 116.2 17.6 126 471-604 193-320 (411)
95 KOG1489 Predicted GTP-binding 99.0 4.4E-09 9.5E-14 117.1 12.7 126 467-601 193-325 (366)
96 cd00878 Arf_Arl Arf (ADP-ribos 99.0 4.7E-09 1E-13 103.4 11.6 113 472-602 1-114 (158)
97 cd04124 RabL2 RabL2 subfamily. 99.0 3.8E-09 8.2E-14 105.5 11.0 112 471-600 1-116 (161)
98 smart00178 SAR Sar1p-like memb 98.9 8.4E-09 1.8E-13 106.1 13.5 115 468-601 15-131 (184)
99 cd01865 Rab3 Rab3 subfamily. 98.9 8.6E-09 1.9E-13 103.0 13.2 116 471-602 2-120 (165)
100 cd04166 CysN_ATPS CysN_ATPS su 98.9 3.1E-09 6.7E-14 111.9 10.5 113 472-601 1-143 (208)
101 cd01867 Rab8_Rab10_Rab13_like 98.9 5.8E-09 1.3E-13 104.4 11.9 117 470-602 3-122 (167)
102 cd01862 Rab7 Rab7 subfamily. 98.9 1.1E-08 2.5E-13 101.4 13.7 119 471-602 1-123 (172)
103 smart00173 RAS Ras subfamily o 98.9 5.6E-09 1.2E-13 103.2 11.3 117 471-602 1-119 (164)
104 cd04112 Rab26 Rab26 subfamily. 98.9 7.5E-09 1.6E-13 106.7 12.7 117 471-602 1-120 (191)
105 cd01884 EF_Tu EF-Tu subfamily. 98.9 1.1E-08 2.4E-13 107.6 13.9 115 470-601 2-131 (195)
106 cd04159 Arl10_like Arl10-like 98.9 7.2E-09 1.6E-13 99.9 11.4 112 473-602 2-115 (159)
107 cd01891 TypA_BipA TypA (tyrosi 98.9 1E-08 2.3E-13 105.9 12.9 113 471-601 3-130 (194)
108 PLN03118 Rab family protein; P 98.9 6.5E-09 1.4E-13 109.0 11.5 120 467-602 11-134 (211)
109 cd04118 Rab24 Rab24 subfamily. 98.9 9.6E-09 2.1E-13 105.2 12.3 115 471-602 1-119 (193)
110 cd00879 Sar1 Sar1 subfamily. 98.9 9.4E-09 2E-13 104.8 12.0 114 469-601 18-133 (190)
111 COG0536 Obg Predicted GTPase [ 98.9 6E-09 1.3E-13 117.1 11.4 123 472-602 161-289 (369)
112 cd04109 Rab28 Rab28 subfamily. 98.9 1.3E-08 2.9E-13 107.2 13.5 118 471-602 1-123 (215)
113 cd00157 Rho Rho (Ras homology) 98.9 3.6E-09 7.9E-14 104.8 8.7 117 471-604 1-120 (171)
114 cd04156 ARLTS1 ARLTS1 subfamil 98.9 1.6E-08 3.4E-13 99.7 12.8 111 472-601 1-114 (160)
115 cd04149 Arf6 Arf6 subfamily. 98.9 1.9E-08 4.2E-13 102.0 13.6 114 469-601 8-123 (168)
116 cd04175 Rap1 Rap1 subgroup. T 98.9 1.1E-08 2.4E-13 101.6 11.5 118 470-602 1-120 (164)
117 cd04151 Arl1 Arl1 subfamily. 98.9 1.5E-08 3.2E-13 100.5 12.2 111 472-601 1-113 (158)
118 cd04139 RalA_RalB RalA/RalB su 98.9 1.5E-08 3.2E-13 99.5 12.0 117 471-602 1-119 (164)
119 TIGR00437 feoB ferrous iron tr 98.9 1.3E-08 2.9E-13 123.2 14.2 112 477-602 1-113 (591)
120 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.9 1.1E-08 2.4E-13 104.9 11.4 115 470-601 3-122 (183)
121 PRK12317 elongation factor 1-a 98.9 1.5E-08 3.2E-13 117.8 13.8 118 469-602 5-153 (425)
122 cd04122 Rab14 Rab14 subfamily. 98.9 2.2E-08 4.7E-13 100.1 13.0 115 471-602 3-121 (166)
123 cd04146 RERG_RasL11_like RERG/ 98.9 7E-09 1.5E-13 103.3 9.5 117 472-601 1-119 (165)
124 cd01890 LepA LepA subfamily. 98.9 1.2E-08 2.6E-13 102.5 11.2 112 472-601 2-132 (179)
125 cd04116 Rab9 Rab9 subfamily. 98.9 3E-08 6.5E-13 99.1 13.9 118 470-601 5-127 (170)
126 cd04114 Rab30 Rab30 subfamily. 98.9 2.8E-08 6.2E-13 98.7 13.6 117 470-602 7-126 (169)
127 cd04161 Arl2l1_Arl13_like Arl2 98.9 1.6E-08 3.5E-13 102.1 12.0 111 472-601 1-113 (167)
128 cd04158 ARD1 ARD1 subfamily. 98.9 1.1E-08 2.4E-13 103.1 10.9 111 472-601 1-113 (169)
129 cd01858 NGP_1 NGP-1. Autoanti 98.9 7.5E-09 1.6E-13 104.0 9.6 57 469-528 101-157 (157)
130 cd04115 Rab33B_Rab33A Rab33B/R 98.9 2.1E-08 4.6E-13 100.8 12.7 118 471-602 3-123 (170)
131 PF08477 Miro: Miro-like prote 98.9 2.2E-09 4.8E-14 101.3 5.3 115 472-599 1-119 (119)
132 PRK15467 ethanolamine utilizat 98.9 2.3E-08 5.1E-13 101.1 13.0 102 472-601 3-104 (158)
133 PRK09866 hypothetical protein; 98.9 7.1E-08 1.5E-12 116.1 18.9 73 518-601 230-302 (741)
134 cd04155 Arl3 Arl3 subfamily. 98.9 2E-08 4.4E-13 100.3 12.3 116 468-602 12-129 (173)
135 cd04144 Ras2 Ras2 subfamily. 98.9 1.3E-08 2.9E-13 104.8 11.3 117 472-602 1-120 (190)
136 cd04125 RabA_like RabA-like su 98.9 1.5E-08 3.2E-13 103.8 11.5 117 471-602 1-119 (188)
137 cd04127 Rab27A Rab27a subfamil 98.9 2.9E-08 6.2E-13 100.1 13.3 118 470-602 4-134 (180)
138 cd01886 EF-G Elongation factor 98.9 1.8E-08 3.9E-13 111.2 12.7 112 472-601 1-129 (270)
139 TIGR02528 EutP ethanolamine ut 98.8 1.8E-08 3.9E-13 97.9 11.1 101 472-602 2-102 (142)
140 CHL00071 tufA elongation facto 98.8 3.2E-08 6.9E-13 114.9 15.1 118 468-602 10-142 (409)
141 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.8 2.4E-08 5.2E-13 101.4 12.4 113 470-601 15-129 (174)
142 cd04107 Rab32_Rab38 Rab38/Rab3 98.8 2.5E-08 5.5E-13 103.6 12.7 117 471-602 1-124 (201)
143 cd00877 Ran Ran (Ras-related n 98.8 1.5E-08 3.3E-13 102.3 10.3 113 471-601 1-117 (166)
144 cd04150 Arf1_5_like Arf1-Arf5- 98.8 3.4E-08 7.3E-13 99.1 12.4 112 471-601 1-114 (159)
145 cd04176 Rap2 Rap2 subgroup. T 98.8 2.4E-08 5.2E-13 98.9 11.1 117 471-602 2-120 (163)
146 PF00009 GTP_EFTU: Elongation 98.8 1.6E-08 3.5E-13 104.3 10.2 114 470-601 3-135 (188)
147 PTZ00258 GTP-binding protein; 98.8 1.5E-08 3.2E-13 117.2 10.8 91 466-564 17-126 (390)
148 cd04110 Rab35 Rab35 subfamily. 98.8 3.9E-08 8.4E-13 102.4 12.9 117 469-602 5-124 (199)
149 PLN03110 Rab GTPase; Provision 98.8 4.8E-08 1E-12 103.5 13.6 121 467-602 9-131 (216)
150 cd01893 Miro1 Miro1 subfamily. 98.8 2.4E-08 5.2E-13 100.1 10.4 114 471-602 1-117 (166)
151 PRK09601 GTP-binding protein Y 98.8 2.1E-08 4.5E-13 115.0 11.1 88 470-564 2-107 (364)
152 PTZ00133 ADP-ribosylation fact 98.8 5.8E-08 1.3E-12 100.0 13.4 113 469-601 16-131 (182)
153 cd04111 Rab39 Rab39 subfamily. 98.8 1.7E-07 3.6E-12 99.2 17.0 116 471-602 3-123 (211)
154 cd01888 eIF2_gamma eIF2-gamma 98.8 1.2E-07 2.6E-12 99.6 15.7 115 471-601 1-150 (203)
155 cd00882 Ras_like_GTPase Ras-li 98.8 1.4E-08 3E-13 94.8 7.7 114 475-603 1-117 (157)
156 cd01900 YchF YchF subfamily. 98.8 1.6E-08 3.4E-13 112.2 9.4 84 473-563 1-102 (274)
157 smart00177 ARF ARF-like small 98.8 7.3E-08 1.6E-12 98.3 13.5 113 470-601 13-127 (175)
158 cd04137 RheB Rheb (Ras Homolog 98.8 5E-08 1.1E-12 98.6 11.9 117 471-602 2-120 (180)
159 cd04178 Nucleostemin_like Nucl 98.8 1.1E-08 2.3E-13 106.1 7.1 58 467-528 114-172 (172)
160 cd04148 RGK RGK subfamily. Th 98.8 3.1E-08 6.8E-13 105.5 10.9 117 471-602 1-120 (221)
161 cd01892 Miro2 Miro2 subfamily. 98.8 7.2E-08 1.6E-12 97.8 13.0 117 468-601 2-121 (169)
162 cd04108 Rab36_Rab34 Rab34/Rab3 98.8 7.2E-08 1.6E-12 98.0 12.9 116 471-602 1-120 (170)
163 cd04168 TetM_like Tet(M)-like 98.8 1.1E-07 2.3E-12 103.1 14.9 112 472-601 1-129 (237)
164 cd04170 EF-G_bact Elongation f 98.8 8.9E-08 1.9E-12 104.6 14.4 112 472-601 1-129 (268)
165 cd04177 RSR1 RSR1 subgroup. R 98.8 3.9E-08 8.5E-13 98.6 10.8 117 471-602 2-120 (168)
166 PTZ00369 Ras-like protein; Pro 98.8 3.8E-08 8.3E-13 101.3 10.9 117 470-601 5-123 (189)
167 cd04147 Ras_dva Ras-dva subfam 98.8 4.9E-08 1.1E-12 101.4 11.3 115 472-602 1-118 (198)
168 cd04117 Rab15 Rab15 subfamily. 98.7 1.2E-07 2.6E-12 94.9 13.4 116 471-602 1-119 (161)
169 cd04162 Arl9_Arfrp2_like Arl9/ 98.7 9.3E-08 2E-12 96.5 12.6 111 473-601 2-112 (164)
170 cd04132 Rho4_like Rho4-like su 98.7 5.6E-08 1.2E-12 98.9 11.0 115 471-602 1-119 (187)
171 smart00174 RHO Rho (Ras homolo 98.7 2.5E-08 5.4E-13 99.8 8.2 113 473-602 1-116 (174)
172 PLN03108 Rab family protein; P 98.7 6.6E-08 1.4E-12 101.9 11.6 119 469-602 5-125 (210)
173 cd04169 RF3 RF3 subfamily. Pe 98.7 1.9E-07 4.2E-12 102.9 15.5 112 472-601 4-136 (267)
174 PLN00223 ADP-ribosylation fact 98.7 1.7E-07 3.8E-12 96.5 13.9 114 469-601 16-131 (181)
175 cd04135 Tc10 TC10 subfamily. 98.7 7E-08 1.5E-12 96.6 10.5 114 471-601 1-117 (174)
176 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.7 1.4E-07 3.1E-12 96.0 12.6 117 470-601 2-120 (172)
177 cd01883 EF1_alpha Eukaryotic e 98.7 6.6E-08 1.4E-12 102.8 10.4 115 472-602 1-151 (219)
178 cd04143 Rhes_like Rhes_like su 98.7 1.1E-07 2.4E-12 103.6 12.0 117 471-602 1-127 (247)
179 PRK14721 flhF flagellar biosyn 98.7 3.9E-07 8.5E-12 106.5 17.1 123 466-602 187-340 (420)
180 cd01874 Cdc42 Cdc42 subfamily. 98.7 1.2E-07 2.7E-12 96.9 11.3 115 471-602 2-119 (175)
181 cd04130 Wrch_1 Wrch-1 subfamil 98.7 7.1E-08 1.5E-12 97.3 9.4 114 471-602 1-118 (173)
182 TIGR00475 selB selenocysteine- 98.7 4.6E-07 9.9E-12 109.9 17.9 115 471-602 1-117 (581)
183 PF10662 PduV-EutP: Ethanolami 98.7 2.3E-07 4.9E-12 94.1 12.7 100 472-601 3-102 (143)
184 PLN03071 GTP-binding nuclear p 98.7 1.2E-07 2.5E-12 101.0 10.9 117 468-601 11-130 (219)
185 TIGR00484 EF-G translation elo 98.7 1.5E-07 3.2E-12 116.1 13.2 114 471-602 11-141 (689)
186 cd04105 SR_beta Signal recogni 98.6 2.7E-07 5.8E-12 97.3 13.0 115 472-602 2-123 (203)
187 PRK09563 rbgA GTPase YlqF; Rev 98.6 8.4E-08 1.8E-12 106.5 9.6 64 467-533 118-181 (287)
188 PLN03127 Elongation factor Tu; 98.6 2.6E-07 5.6E-12 108.8 14.1 117 468-601 59-190 (447)
189 PRK00007 elongation factor G; 98.6 1.6E-07 3.5E-12 115.8 12.9 114 471-602 11-141 (693)
190 cd04120 Rab12 Rab12 subfamily. 98.6 3E-07 6.4E-12 97.4 13.1 115 471-601 1-118 (202)
191 PRK00049 elongation factor Tu; 98.6 3.7E-07 8.1E-12 105.7 15.1 117 467-601 9-141 (396)
192 PRK12727 flagellar biosynthesi 98.6 1.9E-06 4.1E-11 102.9 21.1 94 389-492 260-372 (559)
193 PRK14722 flhF flagellar biosyn 98.6 9.6E-07 2.1E-11 101.9 17.8 28 466-493 133-160 (374)
194 PRK12739 elongation factor G; 98.6 1.5E-07 3.3E-12 116.0 12.0 114 471-602 9-139 (691)
195 cd04126 Rab20 Rab20 subfamily. 98.6 2E-07 4.4E-12 100.0 11.3 113 471-602 1-114 (220)
196 PRK05306 infB translation init 98.6 5.9E-07 1.3E-11 111.9 16.8 115 467-601 287-402 (787)
197 cd04134 Rho3 Rho3 subfamily. 98.6 1.7E-07 3.6E-12 96.8 10.1 114 472-602 2-118 (189)
198 cd01870 RhoA_like RhoA-like su 98.6 1.1E-07 2.4E-12 95.2 8.4 115 471-602 2-119 (175)
199 KOG3859 Septins (P-loop GTPase 98.6 5.2E-08 1.1E-12 106.8 6.4 186 468-672 40-259 (406)
200 cd01855 YqeH YqeH. YqeH is an 98.6 6.5E-08 1.4E-12 100.0 6.9 56 469-528 126-190 (190)
201 cd04121 Rab40 Rab40 subfamily. 98.6 5.5E-07 1.2E-11 94.2 13.7 116 468-601 4-123 (189)
202 cd04131 Rnd Rnd subfamily. Th 98.6 3.7E-07 7.9E-12 94.2 12.1 114 471-601 2-118 (178)
203 cd01871 Rac1_like Rac1-like su 98.6 3.9E-07 8.4E-12 93.2 12.2 114 471-601 2-118 (174)
204 PRK12735 elongation factor Tu; 98.6 3.6E-07 7.7E-12 105.8 13.0 118 466-601 8-141 (396)
205 cd01851 GBP Guanylate-binding 98.6 1E-06 2.2E-11 94.8 15.6 88 472-563 9-101 (224)
206 cd01885 EF2 EF2 (for archaea a 98.6 6.6E-07 1.4E-11 96.4 14.0 112 472-601 2-138 (222)
207 PRK12736 elongation factor Tu; 98.6 6.9E-07 1.5E-11 103.5 15.0 118 467-601 9-141 (394)
208 cd04167 Snu114p Snu114p subfam 98.6 6.3E-07 1.4E-11 94.6 13.5 113 472-602 2-137 (213)
209 cd01849 YlqF_related_GTPase Yl 98.6 8.5E-08 1.8E-12 96.4 6.6 58 468-528 98-155 (155)
210 TIGR03596 GTPase_YlqF ribosome 98.6 2.3E-07 5.1E-12 102.3 10.6 63 468-533 116-178 (276)
211 cd01882 BMS1 Bms1. Bms1 is an 98.5 8.4E-07 1.8E-11 95.3 13.7 110 467-602 36-147 (225)
212 cd01899 Ygr210 Ygr210 subfamil 98.5 2.6E-07 5.7E-12 104.5 10.3 86 473-565 1-111 (318)
213 TIGR00485 EF-Tu translation el 98.5 1.1E-06 2.4E-11 101.7 15.6 119 467-602 9-142 (394)
214 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 98.5 6.7E-07 1.5E-11 92.9 12.4 116 469-601 4-122 (182)
215 PLN03126 Elongation factor Tu; 98.5 1.4E-06 3.1E-11 103.5 16.6 118 468-602 79-211 (478)
216 PRK05506 bifunctional sulfate 98.5 4.9E-07 1.1E-11 110.5 13.0 119 467-602 21-171 (632)
217 TIGR00487 IF-2 translation ini 98.5 6.8E-07 1.5E-11 108.5 13.9 114 468-601 85-200 (587)
218 TIGR02836 spore_IV_A stage IV 98.5 3.8E-07 8.3E-12 105.6 10.9 125 470-601 17-193 (492)
219 CHL00189 infB translation init 98.5 1.7E-06 3.6E-11 107.2 17.0 115 467-601 241-360 (742)
220 COG1161 Predicted GTPases [Gen 98.5 1.4E-07 3E-12 106.7 7.0 63 467-533 129-192 (322)
221 cd04165 GTPBP1_like GTPBP1-lik 98.5 1.1E-06 2.3E-11 94.7 13.3 115 472-602 1-152 (224)
222 PRK09602 translation-associate 98.5 3.8E-07 8.3E-12 105.9 10.6 86 471-564 2-113 (396)
223 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 1.8E-07 3.9E-12 92.8 6.4 56 472-530 85-140 (141)
224 cd04128 Spg1 Spg1p. Spg1p (se 98.5 1.4E-06 3E-11 90.1 13.0 115 471-602 1-118 (182)
225 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 98.5 1.2E-06 2.6E-11 95.0 13.0 116 469-601 12-130 (232)
226 TIGR00483 EF-1_alpha translati 98.5 1.6E-06 3.6E-11 101.0 14.9 117 469-601 6-154 (426)
227 COG1419 FlhF Flagellar GTP-bin 98.5 1.1E-06 2.3E-11 101.6 12.9 119 467-602 200-352 (407)
228 cd04102 RabL3 RabL3 (Rab-like3 98.5 1.6E-06 3.5E-11 92.0 13.3 117 471-602 1-143 (202)
229 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 98.5 1.2E-06 2.6E-11 94.4 12.3 115 471-602 2-119 (222)
230 PRK05124 cysN sulfate adenylyl 98.5 1E-06 2.3E-11 104.4 12.7 117 468-601 25-173 (474)
231 TIGR02034 CysN sulfate adenyly 98.5 2E-06 4.4E-11 100.0 14.8 115 471-602 1-147 (406)
232 PRK10512 selenocysteinyl-tRNA- 98.5 3.7E-06 8.1E-11 102.7 17.6 114 471-601 1-117 (614)
233 cd01875 RhoG RhoG subfamily. 98.4 1.5E-06 3.3E-11 90.1 12.1 115 470-601 3-120 (191)
234 cd01856 YlqF YlqF. Proteins o 98.4 3.5E-07 7.6E-12 93.5 7.2 58 468-529 113-171 (171)
235 COG1100 GTPase SAR1 and relate 98.4 2.1E-06 4.5E-11 89.5 12.9 117 471-602 6-125 (219)
236 TIGR01425 SRP54_euk signal rec 98.4 1.3E-05 2.9E-10 94.0 20.6 119 470-602 100-253 (429)
237 TIGR01394 TypA_BipA GTP-bindin 98.4 1.4E-06 3.1E-11 105.9 13.1 112 472-601 3-129 (594)
238 TIGR00491 aIF-2 translation in 98.4 1.5E-06 3.3E-11 105.5 13.2 112 471-602 5-135 (590)
239 PRK12288 GTPase RsgA; Reviewed 98.4 6E-07 1.3E-11 102.7 9.2 59 472-533 207-272 (347)
240 PF00071 Ras: Ras family; Int 98.4 1.3E-06 2.9E-11 86.3 10.5 115 472-602 1-118 (162)
241 TIGR03597 GTPase_YqeH ribosome 98.4 8.9E-07 1.9E-11 101.5 10.3 58 470-531 154-217 (360)
242 PF04670 Gtr1_RagA: Gtr1/RagA 98.4 8.6E-07 1.9E-11 96.4 9.5 187 472-680 1-191 (232)
243 cd04103 Centaurin_gamma Centau 98.4 4.6E-06 1E-10 84.3 13.8 110 471-601 1-112 (158)
244 cd04133 Rop_like Rop subfamily 98.4 2.7E-06 5.8E-11 88.1 12.3 115 471-602 2-119 (176)
245 cd04129 Rho2 Rho2 subfamily. 98.4 1.1E-06 2.3E-11 90.6 9.3 114 471-601 2-118 (187)
246 PRK10218 GTP-binding protein; 98.4 2.3E-06 5.1E-11 104.2 13.6 113 471-601 6-133 (607)
247 TIGR00503 prfC peptide chain r 98.4 5.4E-06 1.2E-10 99.7 16.1 115 469-601 10-145 (527)
248 PRK06995 flhF flagellar biosyn 98.4 1.6E-05 3.4E-10 94.7 19.6 27 467-493 253-279 (484)
249 TIGR00157 ribosome small subun 98.4 6.6E-07 1.4E-11 97.5 7.4 59 471-533 121-186 (245)
250 PRK12289 GTPase RsgA; Reviewed 98.4 6.3E-07 1.4E-11 102.7 7.2 59 472-533 174-239 (352)
251 PF00025 Arf: ADP-ribosylation 98.4 1.4E-06 3.1E-11 89.5 9.1 115 468-601 12-128 (175)
252 PF03193 DUF258: Protein of un 98.3 3.2E-07 7E-12 94.7 4.0 61 471-533 36-102 (161)
253 PTZ00132 GTP-binding nuclear p 98.3 3.6E-06 7.8E-11 88.5 11.5 116 469-601 8-126 (215)
254 PRK14723 flhF flagellar biosyn 98.3 7.2E-06 1.6E-10 101.6 15.7 122 469-602 184-337 (767)
255 PRK11889 flhF flagellar biosyn 98.3 3.8E-06 8.3E-11 97.5 12.4 120 469-602 240-391 (436)
256 KOG2486 Predicted GTPase [Gene 98.3 3E-06 6.6E-11 93.6 11.0 126 468-602 134-262 (320)
257 TIGR03680 eif2g_arch translati 98.3 9.4E-06 2E-10 94.5 15.7 118 469-602 3-148 (406)
258 PRK00741 prfC peptide chain re 98.3 5.4E-06 1.2E-10 99.7 13.5 115 469-601 9-144 (526)
259 PLN00023 GTP-binding protein; 98.3 5.8E-06 1.3E-10 94.0 12.9 120 468-602 19-165 (334)
260 PRK13351 elongation factor G; 98.3 4.6E-06 9.9E-11 102.9 13.0 115 470-602 8-139 (687)
261 PTZ00416 elongation factor 2; 98.3 4.7E-06 1E-10 105.0 13.2 112 471-601 20-157 (836)
262 TIGR01393 lepA GTP-binding pro 98.3 4.8E-06 1E-10 101.4 12.5 112 472-601 5-135 (595)
263 PRK04004 translation initiatio 98.3 6.6E-06 1.4E-10 100.1 13.3 112 470-601 6-136 (586)
264 cd01859 MJ1464 MJ1464. This f 98.3 2.7E-06 5.9E-11 85.1 8.3 57 469-528 100-156 (156)
265 TIGR00490 aEF-2 translation el 98.3 6E-06 1.3E-10 102.6 13.1 115 470-602 19-152 (720)
266 PRK12726 flagellar biosynthesi 98.2 3.3E-05 7.2E-10 89.5 17.9 174 411-602 146-356 (407)
267 PRK12723 flagellar biosynthesi 98.2 2.2E-05 4.8E-10 91.3 16.4 120 469-602 173-326 (388)
268 COG0012 Predicted GTPase, prob 98.2 3.4E-06 7.3E-11 96.6 9.1 87 470-564 2-108 (372)
269 PTZ00141 elongation factor 1- 98.2 1.6E-05 3.4E-10 94.0 14.8 117 468-600 5-157 (446)
270 PRK04000 translation initiatio 98.2 1.8E-05 3.8E-10 92.5 15.1 120 467-602 6-153 (411)
271 cd01873 RhoBTB RhoBTB subfamil 98.2 8.3E-06 1.8E-10 85.8 11.3 114 470-602 2-134 (195)
272 PRK05703 flhF flagellar biosyn 98.2 1.8E-05 3.8E-10 93.1 15.0 122 467-602 218-371 (424)
273 PRK00098 GTPase RsgA; Reviewed 98.2 3.8E-06 8.1E-11 94.1 8.8 61 470-532 164-230 (298)
274 PRK13796 GTPase YqeH; Provisio 98.2 2.3E-06 5E-11 98.4 6.4 58 470-531 160-223 (365)
275 COG4917 EutP Ethanolamine util 98.2 1E-05 2.2E-10 80.6 9.8 138 472-656 3-142 (148)
276 COG1162 Predicted GTPases [Gen 98.2 4.1E-06 8.9E-11 93.9 7.9 59 472-533 166-231 (301)
277 smart00176 RAN Ran (Ras-relate 98.2 8.2E-06 1.8E-10 86.4 9.7 107 476-601 1-112 (200)
278 cd01854 YjeQ_engC YjeQ/EngC. 98.1 5.6E-06 1.2E-10 92.2 8.4 59 471-532 162-227 (287)
279 PRK07560 elongation factor EF- 98.1 4E-05 8.6E-10 95.6 16.1 114 471-602 21-153 (731)
280 PRK05433 GTP-binding protein L 98.1 1.8E-05 3.9E-10 96.6 12.5 113 471-601 8-139 (600)
281 PRK12740 elongation factor G; 98.1 2.7E-05 5.8E-10 95.9 14.1 108 476-601 1-125 (668)
282 PF00448 SRP54: SRP54-type pro 98.1 1.9E-06 4.1E-11 91.3 3.4 118 471-602 2-154 (196)
283 PLN00116 translation elongatio 98.1 2.5E-05 5.5E-10 98.7 13.8 113 471-602 20-164 (843)
284 PRK14974 cell division protein 98.1 3.7E-05 7.9E-10 88.0 13.5 120 469-602 139-293 (336)
285 KOG1424 Predicted GTP-binding 98.1 4.5E-06 9.8E-11 98.1 6.2 62 469-534 313-375 (562)
286 TIGR00092 GTP-binding protein 98.0 1.6E-05 3.4E-10 91.8 9.4 88 470-564 2-108 (368)
287 KOG0084 GTPase Rab1/YPT1, smal 98.0 5.7E-05 1.2E-09 80.2 12.2 119 467-602 6-128 (205)
288 PRK12724 flagellar biosynthesi 98.0 0.0001 2.2E-09 86.5 15.5 119 470-602 223-373 (432)
289 PF09439 SRPRB: Signal recogni 98.0 1.1E-05 2.5E-10 84.9 7.0 116 471-602 4-126 (181)
290 COG2229 Predicted GTPase [Gene 98.0 0.00026 5.6E-09 74.6 16.3 117 469-602 9-135 (187)
291 KOG0078 GTP-binding protein SE 98.0 7E-05 1.5E-09 80.1 12.3 120 466-602 8-131 (207)
292 KOG0073 GTP-binding ADP-ribosy 97.9 5.4E-05 1.2E-09 78.4 10.6 113 470-601 16-130 (185)
293 TIGR00064 ftsY signal recognit 97.9 0.00024 5.1E-09 79.1 16.6 120 469-602 71-231 (272)
294 KOG0395 Ras-related GTPase [Ge 97.9 2.8E-05 6E-10 82.5 8.6 118 470-602 3-122 (196)
295 KOG0087 GTPase Rab11/YPT3, sma 97.9 4E-05 8.6E-10 82.1 9.1 122 465-602 9-133 (222)
296 PRK13768 GTPase; Provisional 97.9 4.1E-05 8.9E-10 84.0 9.5 81 518-603 97-177 (253)
297 KOG0410 Predicted GTP binding 97.9 7.5E-05 1.6E-09 84.3 11.5 129 468-602 176-308 (410)
298 KOG1954 Endocytosis/signaling 97.9 3.7E-05 8E-10 87.7 8.7 129 466-602 54-225 (532)
299 KOG0448 Mitofusin 1 GTPase, in 97.9 4.6E-05 1E-09 92.2 9.9 119 468-602 107-275 (749)
300 KOG1707 Predicted Ras related/ 97.8 4.8E-05 1E-09 90.8 9.1 121 468-602 7-129 (625)
301 PLN00043 elongation factor 1-a 97.8 0.00028 6E-09 83.6 15.4 118 468-601 5-158 (447)
302 PRK10416 signal recognition pa 97.8 0.00052 1.1E-08 78.1 16.7 123 469-602 113-273 (318)
303 KOG1491 Predicted GTP-binding 97.8 5.8E-05 1.3E-09 85.6 8.7 90 467-564 17-125 (391)
304 PRK00771 signal recognition pa 97.8 0.00068 1.5E-08 80.2 17.5 121 468-602 93-246 (437)
305 KOG1486 GTP-binding protein DR 97.8 3.5E-05 7.7E-10 84.3 5.9 104 471-585 63-168 (364)
306 COG5256 TEF1 Translation elong 97.8 0.00027 5.8E-09 82.1 13.3 142 468-634 5-182 (428)
307 KOG0092 GTPase Rab5/YPT51 and 97.7 5.4E-05 1.2E-09 80.1 6.9 116 470-602 5-124 (200)
308 PTZ00327 eukaryotic translatio 97.7 0.00043 9.2E-09 82.4 15.1 119 468-602 32-185 (460)
309 KOG0095 GTPase Rab30, small G 97.7 0.00044 9.6E-09 70.8 12.5 121 465-602 2-126 (213)
310 PRK09435 membrane ATPase/prote 97.7 0.00017 3.8E-09 82.4 10.7 24 468-491 54-77 (332)
311 KOG0094 GTPase Rab6/YPT6/Ryh1, 97.7 0.00043 9.3E-09 73.7 12.7 118 470-603 22-143 (221)
312 KOG0079 GTP-binding protein H- 97.7 0.00016 3.4E-09 74.0 8.8 113 471-601 9-125 (198)
313 KOG2485 Conserved ATP/GTP bind 97.7 9.6E-05 2.1E-09 83.2 7.5 66 467-533 140-211 (335)
314 KOG0098 GTPase Rab2, small G p 97.6 0.00038 8.2E-09 73.7 11.2 114 470-602 6-125 (216)
315 KOG0080 GTPase Rab18, small G 97.6 0.00022 4.7E-09 73.9 9.0 115 468-600 9-129 (209)
316 KOG0394 Ras-related GTPase [Ge 97.6 0.00052 1.1E-08 72.5 11.9 115 469-601 8-131 (210)
317 KOG0447 Dynamin-like GTP bindi 97.6 0.0041 8.9E-08 74.0 19.7 127 471-603 309-494 (980)
318 KOG0781 Signal recognition par 97.5 0.00017 3.8E-09 84.6 7.7 125 468-601 376-543 (587)
319 TIGR03348 VI_IcmF type VI secr 97.5 0.00031 6.8E-09 91.8 10.1 122 473-602 114-257 (1169)
320 TIGR00750 lao LAO/AO transport 97.5 0.00037 8.1E-09 78.2 9.3 27 466-492 30-56 (300)
321 KOG2484 GTPase [General functi 97.5 8.8E-05 1.9E-09 85.5 4.4 73 457-533 237-312 (435)
322 PRK10867 signal recognition pa 97.5 0.0017 3.7E-08 76.8 14.9 120 469-602 99-254 (433)
323 PRK06731 flhF flagellar biosyn 97.4 0.00049 1.1E-08 76.8 9.1 120 469-602 74-225 (270)
324 KOG3883 Ras family small GTPas 97.4 0.00099 2.2E-08 68.7 10.2 125 466-603 5-133 (198)
325 KOG1532 GTPase XAB1, interacts 97.3 0.0013 2.8E-08 73.2 10.5 29 465-493 14-42 (366)
326 KOG1145 Mitochondrial translat 97.3 0.0017 3.7E-08 77.6 11.5 159 467-654 150-313 (683)
327 TIGR00959 ffh signal recogniti 97.2 0.0072 1.6E-07 71.6 16.6 22 470-491 99-120 (428)
328 COG0532 InfB Translation initi 97.2 0.0025 5.3E-08 76.2 12.7 114 470-602 5-121 (509)
329 COG5192 BMS1 GTP-binding prote 97.2 0.0035 7.6E-08 74.7 13.6 113 464-602 63-177 (1077)
330 PRK01889 GTPase RsgA; Reviewed 97.2 0.00048 1E-08 79.4 5.7 62 469-532 194-261 (356)
331 KOG2423 Nucleolar GTPase [Gene 97.2 0.00012 2.7E-09 84.1 0.9 61 469-532 306-366 (572)
332 KOG0093 GTPase Rab3, small G p 97.1 0.0029 6.3E-08 65.0 9.5 119 467-602 18-140 (193)
333 COG0480 FusA Translation elong 97.0 0.0047 1E-07 77.0 12.7 116 469-602 9-142 (697)
334 COG1217 TypA Predicted membran 97.0 0.0033 7E-08 74.2 10.2 113 472-602 7-134 (603)
335 cd03115 SRP The signal recogni 96.9 0.0086 1.9E-07 61.2 11.9 72 517-602 82-153 (173)
336 KOG0458 Elongation factor 1 al 96.9 0.0084 1.8E-07 72.3 12.6 120 468-602 175-329 (603)
337 KOG0090 Signal recognition par 96.8 0.005 1.1E-07 66.7 9.5 114 471-602 39-159 (238)
338 PF03029 ATP_bind_1: Conserved 96.8 0.0016 3.4E-08 71.4 5.2 17 475-491 1-17 (238)
339 PF03308 ArgK: ArgK protein; 96.8 0.0013 2.8E-08 73.0 4.4 23 469-491 28-50 (266)
340 COG3523 IcmF Type VI protein s 96.7 0.003 6.4E-08 82.0 8.0 124 473-602 128-270 (1188)
341 COG0541 Ffh Signal recognition 96.7 0.016 3.6E-07 68.2 13.2 184 399-602 25-253 (451)
342 cd03112 CobW_like The function 96.7 0.0052 1.1E-07 62.9 7.8 21 473-493 3-23 (158)
343 PRK14845 translation initiatio 96.6 0.014 3.1E-07 75.5 13.2 103 481-602 472-592 (1049)
344 COG0552 FtsY Signal recognitio 96.6 0.014 3.1E-07 66.9 11.7 24 469-492 138-161 (340)
345 KOG0075 GTP-binding ADP-ribosy 96.5 0.0053 1.2E-07 63.2 6.5 117 468-601 18-135 (186)
346 KOG0393 Ras-related small GTPa 96.5 0.0034 7.3E-08 67.3 5.1 115 470-601 4-122 (198)
347 KOG0077 Vesicle coat complex C 96.4 0.0069 1.5E-07 63.4 6.9 118 467-602 17-135 (193)
348 KOG3886 GTP-binding protein [S 96.4 0.017 3.7E-07 63.4 10.0 126 471-604 5-132 (295)
349 COG1703 ArgK Putative periplas 96.3 0.013 2.8E-07 66.4 8.8 24 468-491 49-72 (323)
350 cd03114 ArgK-like The function 96.2 0.018 3.8E-07 58.7 8.3 21 472-492 1-21 (148)
351 PF00004 AAA: ATPase family as 96.2 0.015 3.2E-07 55.5 7.3 103 473-599 1-111 (132)
352 KOG0462 Elongation factor-type 96.2 0.02 4.3E-07 68.9 9.6 114 471-602 61-191 (650)
353 KOG0091 GTPase Rab39, small G 96.1 0.013 2.7E-07 61.4 6.9 121 468-602 6-130 (213)
354 KOG0086 GTPase Rab4, small G p 96.1 0.033 7.2E-07 57.7 9.5 84 467-565 6-93 (214)
355 TIGR00073 hypB hydrogenase acc 96.0 0.024 5.2E-07 60.2 8.3 24 470-493 22-45 (207)
356 KOG1487 GTP-binding protein DR 95.9 0.0083 1.8E-07 66.6 4.5 104 472-586 61-166 (358)
357 cd00071 GMPK Guanosine monopho 95.9 0.0057 1.2E-07 61.3 2.9 55 473-528 2-56 (137)
358 TIGR03499 FlhF flagellar biosy 95.9 0.05 1.1E-06 61.0 10.7 27 468-494 192-218 (282)
359 PRK10463 hydrogenase nickel in 95.8 0.064 1.4E-06 60.8 11.1 24 470-493 104-127 (290)
360 KOG0074 GTP-binding ADP-ribosy 95.8 0.027 5.9E-07 57.8 7.3 81 468-564 15-96 (185)
361 KOG0780 Signal recognition par 95.6 0.2 4.4E-06 58.7 14.2 90 469-564 100-224 (483)
362 KOG0088 GTPase Rab21, small G 95.6 0.0066 1.4E-07 63.1 2.2 116 468-601 11-131 (218)
363 COG3276 SelB Selenocysteine-sp 95.6 0.091 2E-06 62.2 11.6 114 472-602 2-117 (447)
364 COG0194 Gmk Guanylate kinase [ 95.5 0.0067 1.4E-07 64.6 2.1 54 469-525 3-56 (191)
365 KOG0070 GTP-binding ADP-ribosy 95.5 0.021 4.6E-07 60.5 5.6 113 469-601 16-131 (181)
366 KOG0468 U5 snRNP-specific prot 95.5 0.078 1.7E-06 65.0 10.8 114 471-602 129-263 (971)
367 TIGR03263 guanyl_kin guanylate 95.5 0.0076 1.7E-07 61.7 2.2 56 471-528 2-57 (180)
368 KOG0461 Selenocysteine-specifi 95.5 0.11 2.5E-06 59.8 11.4 117 469-604 6-138 (522)
369 KOG0071 GTP-binding ADP-ribosy 95.4 0.078 1.7E-06 54.5 9.0 112 470-601 17-131 (180)
370 KOG1144 Translation initiation 95.4 0.042 9E-07 67.9 8.3 116 465-602 471-606 (1064)
371 COG2895 CysN GTPases - Sulfate 95.4 0.075 1.6E-06 61.5 9.7 118 468-602 4-153 (431)
372 KOG4252 GTP-binding protein [S 95.3 0.006 1.3E-07 64.4 1.0 121 465-602 15-138 (246)
373 PF02263 GBP: Guanylate-bindin 95.3 0.07 1.5E-06 59.2 9.3 65 467-531 17-87 (260)
374 PRK14737 gmk guanylate kinase; 95.2 0.011 2.5E-07 62.3 2.6 54 470-525 4-57 (186)
375 KOG2749 mRNA cleavage and poly 95.2 0.094 2E-06 60.7 9.9 25 468-492 101-125 (415)
376 COG1341 Predicted GTPase or GT 95.1 0.075 1.6E-06 62.3 8.8 28 466-493 69-96 (398)
377 PRK14738 gmk guanylate kinase; 95.1 0.015 3.2E-07 62.0 2.8 58 467-526 10-67 (206)
378 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.18 3.9E-06 50.8 9.9 30 466-495 22-51 (144)
379 KOG0446 Vacuolar sorting prote 94.9 0.017 3.7E-07 71.8 3.1 127 469-602 28-213 (657)
380 COG1618 Predicted nucleotide k 94.8 0.41 8.9E-06 50.6 12.4 118 468-599 3-141 (179)
381 COG4108 PrfC Peptide chain rel 94.7 0.17 3.7E-06 60.0 10.5 112 471-602 13-147 (528)
382 PF00005 ABC_tran: ABC transpo 94.7 0.025 5.4E-07 55.2 3.3 29 467-495 8-36 (137)
383 PRK00300 gmk guanylate kinase; 94.7 0.025 5.3E-07 59.3 3.4 54 469-524 4-57 (205)
384 KOG0076 GTP-binding ADP-ribosy 94.6 0.048 1E-06 57.7 5.1 118 470-601 17-139 (197)
385 PF05673 DUF815: Protein of un 94.5 0.13 2.9E-06 57.1 8.5 96 470-596 52-147 (249)
386 PRK08472 fliI flagellum-specif 94.4 0.022 4.8E-07 67.6 2.4 91 467-565 154-257 (434)
387 KOG0097 GTPase Rab14, small G 94.4 0.26 5.6E-06 50.6 9.5 112 470-601 11-129 (215)
388 COG0050 TufB GTPases - transla 94.3 0.32 6.9E-06 55.4 11.0 120 466-602 8-142 (394)
389 COG1116 TauB ABC-type nitrate/ 94.3 0.033 7.2E-07 61.7 3.3 30 467-496 26-55 (248)
390 PF13207 AAA_17: AAA domain; P 94.2 0.036 7.9E-07 52.9 3.1 22 472-493 1-22 (121)
391 KOG0081 GTPase Rab27, small G 94.2 0.032 7E-07 58.2 2.9 116 471-601 10-137 (219)
392 cd01130 VirB11-like_ATPase Typ 94.2 0.032 6.9E-07 58.4 2.9 27 468-494 23-49 (186)
393 cd03264 ABC_drug_resistance_li 94.0 0.038 8.2E-07 58.3 3.0 28 467-495 23-50 (211)
394 PTZ00099 rab6; Provisional 94.0 0.22 4.7E-06 51.9 8.5 74 513-601 22-98 (176)
395 COG3840 ThiQ ABC-type thiamine 94.0 0.041 8.8E-07 59.0 3.0 27 468-494 23-49 (231)
396 cd01983 Fer4_NifH The Fer4_Nif 93.8 0.46 9.9E-06 42.3 9.2 70 473-566 2-71 (99)
397 KOG1143 Predicted translation 93.8 0.22 4.7E-06 58.0 8.6 160 470-657 167-360 (591)
398 smart00382 AAA ATPases associa 93.7 0.055 1.2E-06 50.2 3.2 25 470-494 2-26 (148)
399 cd03225 ABC_cobalt_CbiO_domain 93.7 0.051 1.1E-06 57.3 3.3 29 467-495 24-52 (211)
400 cd03261 ABC_Org_Solvent_Resist 93.6 0.055 1.2E-06 58.1 3.3 29 467-495 23-51 (235)
401 TIGR00960 3a0501s02 Type II (G 93.5 0.058 1.3E-06 57.1 3.3 29 467-495 26-54 (216)
402 cd03222 ABC_RNaseL_inhibitor T 93.4 0.056 1.2E-06 56.9 3.1 29 467-495 22-50 (177)
403 cd03238 ABC_UvrA The excision 93.4 0.059 1.3E-06 56.6 3.1 27 466-492 17-43 (176)
404 cd03265 ABC_DrrA DrrA is the A 93.4 0.063 1.4E-06 57.1 3.3 29 467-495 23-51 (220)
405 smart00072 GuKc Guanylate kina 93.4 0.043 9.3E-07 57.2 2.1 53 471-524 3-55 (184)
406 COG3839 MalK ABC-type sugar tr 93.4 0.059 1.3E-06 62.3 3.3 29 467-495 26-54 (338)
407 TIGR02673 FtsE cell division A 93.4 0.063 1.4E-06 56.7 3.3 29 467-495 25-53 (214)
408 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.3 0.064 1.4E-06 56.8 3.3 29 467-495 27-55 (218)
409 cd03226 ABC_cobalt_CbiO_domain 93.3 0.066 1.4E-06 56.4 3.2 29 467-495 23-51 (205)
410 cd03260 ABC_PstB_phosphate_tra 93.2 0.065 1.4E-06 57.2 3.2 28 467-494 23-50 (227)
411 TIGR01166 cbiO cobalt transpor 93.2 0.072 1.6E-06 55.4 3.3 29 467-495 15-43 (190)
412 cd03224 ABC_TM1139_LivF_branch 93.2 0.069 1.5E-06 56.6 3.2 29 467-495 23-51 (222)
413 cd03293 ABC_NrtD_SsuB_transpor 93.1 0.069 1.5E-06 56.8 3.1 29 467-495 27-55 (220)
414 cd02038 FleN-like FleN is a me 93.1 0.63 1.4E-05 46.6 9.8 98 475-599 5-108 (139)
415 TIGR02211 LolD_lipo_ex lipopro 93.1 0.074 1.6E-06 56.4 3.3 29 467-495 28-56 (221)
416 cd03292 ABC_FtsE_transporter F 93.1 0.074 1.6E-06 56.1 3.3 29 467-495 24-52 (214)
417 TIGR02315 ABC_phnC phosphonate 93.1 0.074 1.6E-06 57.3 3.3 29 467-495 25-53 (243)
418 cd03258 ABC_MetN_methionine_tr 93.0 0.075 1.6E-06 56.9 3.3 29 467-495 28-56 (233)
419 TIGR03608 L_ocin_972_ABC putat 93.0 0.073 1.6E-06 55.8 3.2 28 467-494 21-48 (206)
420 PRK10078 ribose 1,5-bisphospho 93.0 0.073 1.6E-06 55.5 3.1 24 471-494 3-26 (186)
421 cd03269 ABC_putative_ATPase Th 93.0 0.077 1.7E-06 56.0 3.3 29 467-495 23-51 (210)
422 COG1136 SalX ABC-type antimicr 93.0 0.075 1.6E-06 58.3 3.3 29 467-495 28-56 (226)
423 cd03262 ABC_HisP_GlnQ_permease 93.0 0.079 1.7E-06 55.8 3.3 29 467-495 23-51 (213)
424 cd03259 ABC_Carb_Solutes_like 93.0 0.079 1.7E-06 56.0 3.3 29 467-495 23-51 (213)
425 TIGR01978 sufC FeS assembly AT 93.0 0.077 1.7E-06 57.0 3.3 27 467-493 23-49 (243)
426 cd03235 ABC_Metallic_Cations A 92.9 0.077 1.7E-06 56.1 3.2 29 467-495 22-50 (213)
427 PRK13541 cytochrome c biogenes 92.9 0.08 1.7E-06 55.5 3.3 29 467-495 23-51 (195)
428 cd03256 ABC_PhnC_transporter A 92.9 0.079 1.7E-06 56.9 3.3 28 467-494 24-51 (241)
429 cd03263 ABC_subfamily_A The AB 92.9 0.08 1.7E-06 56.2 3.3 29 467-495 25-53 (220)
430 cd03216 ABC_Carb_Monos_I This 92.9 0.083 1.8E-06 54.1 3.2 29 467-495 23-51 (163)
431 COG4148 ModC ABC-type molybdat 92.9 0.093 2E-06 59.4 3.8 41 471-525 25-65 (352)
432 cd03287 ABC_MSH3_euk MutS3 hom 92.9 0.64 1.4E-05 50.8 10.1 36 469-504 30-66 (222)
433 cd03218 ABC_YhbG The ABC trans 92.8 0.083 1.8E-06 56.5 3.3 29 467-495 23-51 (232)
434 cd03257 ABC_NikE_OppD_transpor 92.8 0.095 2E-06 55.7 3.7 29 467-495 28-56 (228)
435 PRK11248 tauB taurine transpor 92.8 0.083 1.8E-06 58.0 3.3 29 467-495 24-52 (255)
436 PF13671 AAA_33: AAA domain; P 92.8 0.081 1.8E-06 51.7 2.9 21 473-493 2-22 (143)
437 PRK11264 putative amino-acid A 92.7 0.087 1.9E-06 57.0 3.3 29 467-495 26-54 (250)
438 cd01128 rho_factor Transcripti 92.7 0.55 1.2E-05 52.2 9.6 29 466-494 12-40 (249)
439 PRK14242 phosphate transporter 92.7 0.082 1.8E-06 57.4 3.1 27 467-493 29-55 (253)
440 PRK11629 lolD lipoprotein tran 92.7 0.088 1.9E-06 56.6 3.3 28 467-494 32-59 (233)
441 cd03254 ABCC_Glucan_exporter_l 92.7 0.091 2E-06 56.1 3.3 29 467-495 26-54 (229)
442 cd03301 ABC_MalK_N The N-termi 92.7 0.092 2E-06 55.4 3.3 29 467-495 23-51 (213)
443 cd03266 ABC_NatA_sodium_export 92.7 0.092 2E-06 55.6 3.3 29 467-495 28-56 (218)
444 PRK15177 Vi polysaccharide exp 92.6 0.091 2E-06 56.2 3.3 29 467-495 10-38 (213)
445 cd03268 ABC_BcrA_bacitracin_re 92.6 0.093 2E-06 55.3 3.3 29 467-495 23-51 (208)
446 cd03219 ABC_Mj1267_LivG_branch 92.6 0.091 2E-06 56.3 3.2 28 467-494 23-50 (236)
447 PRK14247 phosphate ABC transpo 92.6 0.091 2E-06 57.0 3.2 28 467-494 26-53 (250)
448 PRK09270 nucleoside triphospha 92.6 0.15 3.2E-06 55.2 4.7 29 467-495 30-58 (229)
449 PRK10895 lipopolysaccharide AB 92.5 0.095 2.1E-06 56.5 3.3 29 467-495 26-54 (241)
450 TIGR01189 ccmA heme ABC export 92.5 0.1 2.2E-06 54.8 3.3 29 467-495 23-51 (198)
451 PRK13540 cytochrome c biogenes 92.5 0.1 2.2E-06 55.0 3.3 29 467-495 24-52 (200)
452 PRK10908 cell division protein 92.5 0.1 2.2E-06 55.7 3.3 29 467-495 25-53 (222)
453 PRK10584 putative ABC transpor 92.5 0.099 2.1E-06 55.8 3.3 29 467-495 33-61 (228)
454 cd03229 ABC_Class3 This class 92.4 0.1 2.3E-06 53.9 3.3 29 467-495 23-51 (178)
455 COG0466 Lon ATP-dependent Lon 92.4 0.44 9.6E-06 59.5 9.0 46 446-492 325-372 (782)
456 PRK13851 type IV secretion sys 92.4 0.084 1.8E-06 61.2 2.8 25 469-493 161-185 (344)
457 cd03214 ABC_Iron-Siderophores_ 92.4 0.11 2.3E-06 54.0 3.3 28 467-494 22-49 (180)
458 cd03231 ABC_CcmA_heme_exporter 92.4 0.1 2.2E-06 55.0 3.3 29 467-495 23-51 (201)
459 PLN03130 ABC transporter C fam 92.4 0.54 1.2E-05 64.4 10.7 26 469-494 1264-1289(1622)
460 PRK13539 cytochrome c biogenes 92.4 0.1 2.3E-06 55.2 3.3 29 467-495 25-53 (207)
461 TIGR02770 nickel_nikD nickel i 92.4 0.1 2.2E-06 56.1 3.3 29 467-495 9-37 (230)
462 PRK11124 artP arginine transpo 92.4 0.12 2.5E-06 55.9 3.7 29 467-495 25-53 (242)
463 cd03296 ABC_CysA_sulfate_impor 92.4 0.1 2.2E-06 56.3 3.3 29 467-495 25-53 (239)
464 cd03369 ABCC_NFT1 Domain 2 of 92.4 0.1 2.3E-06 54.9 3.3 30 466-495 30-59 (207)
465 cd03215 ABC_Carb_Monos_II This 92.4 0.12 2.6E-06 53.7 3.6 29 467-495 23-51 (182)
466 TIGR02868 CydC thiol reductant 92.3 0.095 2.1E-06 63.0 3.3 29 467-495 358-386 (529)
467 PRK14269 phosphate ABC transpo 92.3 0.1 2.2E-06 56.6 3.2 28 467-494 25-52 (246)
468 PRK14241 phosphate transporter 92.3 0.1 2.2E-06 57.1 3.2 28 467-494 27-54 (258)
469 PRK13543 cytochrome c biogenes 92.3 0.11 2.4E-06 55.3 3.3 29 467-495 34-62 (214)
470 PF00625 Guanylate_kin: Guanyl 92.3 0.046 9.9E-07 56.8 0.5 37 472-508 4-40 (183)
471 cd03249 ABC_MTABC3_MDL1_MDL2 M 92.3 0.11 2.4E-06 55.8 3.4 29 467-495 26-54 (238)
472 TIGR03410 urea_trans_UrtE urea 92.3 0.11 2.3E-06 55.6 3.3 29 467-495 23-51 (230)
473 PRK10744 pstB phosphate transp 92.3 0.1 2.2E-06 57.1 3.2 28 467-494 36-63 (260)
474 PRK14262 phosphate ABC transpo 92.3 0.11 2.3E-06 56.5 3.3 28 467-494 26-53 (250)
475 PRK15056 manganese/iron transp 92.3 0.11 2.3E-06 57.6 3.3 29 467-495 30-58 (272)
476 TIGR02322 phosphon_PhnN phosph 92.2 0.097 2.1E-06 53.7 2.8 22 472-493 3-24 (179)
477 PRK14267 phosphate ABC transpo 92.2 0.11 2.3E-06 56.5 3.3 28 467-494 27-54 (253)
478 TIGR03740 galliderm_ABC gallid 92.2 0.11 2.5E-06 55.3 3.3 29 467-495 23-51 (223)
479 COG0481 LepA Membrane GTPase L 92.2 0.54 1.2E-05 56.5 9.0 113 472-602 11-142 (603)
480 PRK14239 phosphate transporter 92.2 0.11 2.4E-06 56.3 3.3 27 467-493 28-54 (252)
481 cd03243 ABC_MutS_homologs The 92.2 0.39 8.6E-06 50.8 7.3 26 467-492 26-51 (202)
482 cd03247 ABCC_cytochrome_bd The 92.2 0.12 2.5E-06 53.5 3.3 29 467-495 25-53 (178)
483 PRK10575 iron-hydroxamate tran 92.2 0.11 2.3E-06 57.2 3.2 29 467-495 34-62 (265)
484 cd03298 ABC_ThiQ_thiamine_tran 92.2 0.11 2.5E-06 54.7 3.3 29 467-495 21-49 (211)
485 PF13555 AAA_29: P-loop contai 92.2 0.11 2.4E-06 46.3 2.7 20 472-491 25-44 (62)
486 cd03233 ABC_PDR_domain1 The pl 92.2 0.11 2.4E-06 55.0 3.1 29 467-495 30-58 (202)
487 cd03295 ABC_OpuCA_Osmoprotecti 92.2 0.11 2.5E-06 56.1 3.3 29 467-495 24-52 (242)
488 PRK07261 topology modulation p 92.1 0.1 2.3E-06 54.1 2.9 23 471-493 1-23 (171)
489 COG0378 HypB Ni2+-binding GTPa 92.1 1.4 3.1E-05 47.7 11.4 22 471-492 14-35 (202)
490 TIGR03864 PQQ_ABC_ATP ABC tran 92.1 0.13 2.8E-06 55.5 3.7 29 467-495 24-52 (236)
491 PLN02772 guanylate kinase 92.1 0.093 2E-06 61.8 2.7 53 471-524 136-188 (398)
492 PRK13638 cbiO cobalt transport 92.1 0.11 2.4E-06 57.3 3.2 29 467-495 24-52 (271)
493 PRK14250 phosphate ABC transpo 92.1 0.12 2.6E-06 56.1 3.3 28 467-494 26-53 (241)
494 TIGR00235 udk uridine kinase. 92.1 0.097 2.1E-06 55.5 2.6 26 468-493 4-29 (207)
495 PF13238 AAA_18: AAA domain; P 92.1 0.12 2.5E-06 49.2 2.9 21 473-493 1-21 (129)
496 PRK14273 phosphate ABC transpo 92.1 0.12 2.5E-06 56.4 3.3 29 467-495 30-58 (254)
497 TIGR02323 CP_lyasePhnK phospho 92.1 0.12 2.6E-06 56.2 3.3 29 467-495 26-54 (253)
498 cd03294 ABC_Pro_Gly_Bertaine T 92.1 0.12 2.5E-06 57.2 3.3 29 467-495 47-75 (269)
499 PRK11300 livG leucine/isoleuci 92.0 0.11 2.5E-06 56.3 3.2 29 467-495 28-56 (255)
500 PRK13645 cbiO cobalt transport 92.0 0.11 2.4E-06 57.9 3.2 29 467-495 34-62 (289)
No 1
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=100.00 E-value=2.4e-214 Score=1846.14 Aligned_cols=751 Identities=60% Similarity=0.934 Sum_probs=701.8
Q ss_pred CCCCCcccCCCCCccccccCCCCCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchh
Q 036930 347 DGGGLPSNRADGSNVFTYQHHAGSGSLFPSLSPGPSINLEGDVTKDKLSDEEKRKIEKIQILRVKFLRLVQRLGHSFDDS 426 (1109)
Q Consensus 347 dgg~~~~~~~d~s~~~s~~~~A~~~~~~~~~~p~p~a~~~~a~~~~Al~~e~g~l~~kLe~~RvkLLrLlarLgaspEdd 426 (1109)
.+|+..+...+. .+++.+++.+.+++..+..+++.+ ..+..+.....++|+.+|++||||++|+|++|++.
T Consensus 4 ~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~k~~~~rvkflrl~~Rlg~s~~~~ 74 (763)
T TIGR00993 4 GLGRSLPLLKPA-SAPRQSRVNGFGSSNQFQQAEDST--------TTLSEEHKEKLEKLQLIRVKFLRLAQRLGQTPENS 74 (763)
T ss_pred CcCccccccCCc-cccccCCcccCCCcccccCCCCCC--------CCcchhhhHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 345555555555 555555655544433333222222 24567889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHhhhcccccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee
Q 036930 427 VVAQVLYRLALALGGHSSQAVSIEAAKRVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS 506 (1109)
Q Consensus 427 lvaqVL~rl~~a~~~~~~~~~~le~a~~~a~qlla~~~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT 506 (1109)
+++||||||.++.+++....|+++.++..+.++++.+.+.+.+.++|+|+|+||||||||||+|+|+..+.++...++||
T Consensus 75 vvaqVlyrl~l~~~~~~~~~~s~d~a~~~a~~~ea~g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT 154 (763)
T TIGR00993 75 IAAQVLYRLGLLAGRQGGGAFSLDAAKAMAEQLEAEGQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT 154 (763)
T ss_pred hHHHHHHHHHHhhccCccccccchhhHHHHhhhhhhhccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce
Confidence 99999999999988888888889999999999999988999999999999999999999999999999998888778999
Q ss_pred EEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC
Q 036930 507 SVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS 586 (1109)
Q Consensus 507 rv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~ 586 (1109)
++......++|++|.|||||||.++......+.++++.+.+++..+++|+||||++++..+.+.++..+++.|++.||..
T Consensus 155 r~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~ 234 (763)
T TIGR00993 155 SVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPS 234 (763)
T ss_pred EEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHH
Confidence 98788888899999999999999986554567788899988988889999999999987776666889999999999999
Q ss_pred CCCeEEEEEeccCCCCCCCCCCCCccHHHHHhhcHHHHHHHHHHHhCCCceeccCCCCHHHHHhhHHHHHhccccceecC
Q 036930 587 VWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRISQAIGDPHLMNLNMMHPVSLVENHQSCQKNRIGEIVLP 666 (1109)
Q Consensus 587 v~k~vIVVLTKaD~l~pd~~~~~p~sieefV~q~~~~LQelI~qc~gr~~lfn~s~r~pv~LvEn~~l~~kn~ig~~VLp 666 (1109)
+|+++||||||+|.++|+++++.+++|++|+.++.+.||++|++|.+++++||.+..+|+.|+||++.|++|..+++|||
T Consensus 235 Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~rs~~Lq~~Irq~~g~~~l~n~~~~~Pv~lvEN~~~C~~N~~gekVLP 314 (763)
T TIGR00993 235 IWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQRSHIVQQAIGQAVGDLRLMNPNLMNPVSLVENHPACRKNRAGQKVLP 314 (763)
T ss_pred hHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhhChHHHHHHHHHhcCcceecccCCCCCEEEEecCCcccCCCCCceeCC
Confidence 99999999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred CCCCchhhhhHHHHHHHHHHHhhccccccCCCC-CccCCCC-CCCchhhHhhhhhccCCCCCcccccCCCCCCchhhhhh
Q 036930 667 NGQSWRPQLLLLCFSLKILSEANSVSKSQGPAP-KKFFGFR-RPAPLSYFLSSLLQSHTHPKLSADQGGDGVESDVELVD 744 (1109)
Q Consensus 667 ng~~W~~~LllLcya~k~L~Ea~g~lk~qe~l~-~~~~g~r-~~P~lp~LlSsLlq~r~~~k~~~~~~g~d~ds~~e~~~ 744 (1109)
||+.|...|++|||+.+++.+++.+++.|+.++ .++++++ +.||||||+|+|+|+|+++|++.+|+|+++|+|+|+++
T Consensus 315 nG~~W~p~llllc~~~k~l~~a~~l~~~q~~~~~~~~~~~~~~~~plp~~ls~ll~~r~~~k~~~~~~~~~~d~d~~~~~ 394 (763)
T TIGR00993 315 NGQVWKPHLLLLCYSSKILSEANALLKLQENIDGRRPFGFRSRAPPLPYLLSWLLQSRAHPKLPEQQGGDEEDSDIELED 394 (763)
T ss_pred CCchhHHHHHHHHHHhhhhccccccccccccccCCCcccccccCCchHHHHHHHhhcCCCCCChhhhcCccccccchhhh
Confidence 999999999999999999999999999999998 6788999 99999999999999999999999999999999999999
Q ss_pred hcCCCccc-hhccccCCCCCccchHHHHHhhHHHHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHhcCCCCC---CCcc
Q 036930 745 FSGSDLED-EDEYDQLPPFKPLRKSQVAKLSKEQRKAYFEEYDYRVQLLQKKQWKEEVKRLREMKKKGYRSNN---DDER 820 (1109)
Q Consensus 745 ~~~~~~ed-e~eydqlP~f~~l~k~q~~~l~~~q~~~y~~e~~yr~~l~~kkq~~e~~~r~~~~k~~~~~~~~---~~~~ 820 (1109)
.+|+++|| |+|||||||||||+|+|++||||||||+||||||||||||||||||||+||||||||+|+++.. +++
T Consensus 395 ~~d~~~ed~e~eydqlppf~~l~ksq~~kl~k~q~k~y~de~dyr~kl~~kkq~ke~~~r~k~~k~~~~~~~~~~~~~~- 473 (763)
T TIGR00993 395 SSDSDEESGEDEYDQLPPFKPLTKAQMAKLSKEQRKAYLEEYDYRVKLLQKKQWREELKRMKMMKKFGKEIGELPDGYS- 473 (763)
T ss_pred ccccccccccccccccCCCccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccCcc-
Confidence 99888654 8899999999999999999999999999999999999999999999999999999999987733 343
Q ss_pred cCCCCCCCCCCcccccCCCCCCCCCCCCCCcccceeecccCCcceeecccCCCCCCCcCCCCccchhhhhhhhccCCcee
Q 036930 821 EDGNLEDDPPATVPAMLPDFALPPSFDGDSPAYRYRLLEATSQLLARPVLDSPSWDHDCGFDGVSLERNFVIANQFPGAF 900 (1109)
Q Consensus 821 ~~~~~~~~~~~~~~v~~pd~~lp~sfd~d~p~~ryr~l~~~~~~l~rpvl~~~gwdhd~g~dg~~~e~~~~~~~~~~~~~ 900 (1109)
|++++++++|++||||||||+||||||||||+||||||++++|||||||||||||||||||||||+|++++|+++|||++
T Consensus 474 ~~~~~~~~~~~~~~vp~pd~~lp~sFDsD~p~~rYr~l~~~~q~l~rpvl~~~gWDhd~g~dg~~~e~~~~~~~~~p~s~ 553 (763)
T TIGR00993 474 EEVDEENGGPAAVPVPLPDMVLPASFDSDNPAYRYRYLEPSSQLLTRPVLDTHGWDHDCGYDGVNAERSFAVKEKFPASV 553 (763)
T ss_pred cccccccCCCccccccCccccCCCccCCCCccceeecccCccceeEeecccCCCCccccCcCcccHHHHHHHHhcCcceE
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccceeeeeeceeeeecCCCCcceeeeeecccccceEEEecccccccccccccccceeEEEeecceeecccccc
Q 036930 901 AFQITKDKKEFNIHLDSSISAKFAESGSTMAGLDIQTVGRQLAYIFRSETKFRSFKMNKTSGGVSITLLGENVATGLKIE 980 (1109)
Q Consensus 901 ~~q~~kdk~~~~i~~~~~~~~~h~~~~~~~~g~diq~~gk~l~y~~~~et~~kn~~~n~t~~g~s~t~~g~~~~~g~k~e 980 (1109)
+||||||||||+||||||+||||++++|+|+||||||+|||||||+||||||||||+|||+||+|+||||++|++|+|||
T Consensus 554 ~~q~~kdkk~~~i~~e~~~s~kh~~~~s~~~g~diQ~~gk~l~yt~r~etk~kn~~~n~t~~g~s~t~lg~~~~~G~K~E 633 (763)
T TIGR00993 554 TVQVTKDKKDFNIHLDSSVSAKHGENGSTMAGFDIQNVGKQLAYTVRGETKFKNFRRNKTAAGLSVTFLGENVSTGVKLE 633 (763)
T ss_pred EEEEeechhhceeeeeeeeeeecCCCcceeeeeehhhhchheEEEEeccceecccccccccceeEEEEecceeeeeeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeccceEEEeecceeeecCcccccceeEEeecCCCCCCCCcccccceeeeecccceeeeecceeeeeccCCcceEEE
Q 036930 981 DEIAVGKRLVLSGNAGAVQCRGDTAYGANLELRLKDKDFPIGNNNSSLGLSLMNWRGDLNLMANVQSQFSVGRSSKMAVC 1060 (1109)
Q Consensus 981 d~~~~gk~~~l~~~~g~~~~~~~~ayg~~~e~~lr~~d~p~~~~~~~~~~s~~~~~~~~~~~~nlqsq~~~~r~~~~~~~ 1060 (1109)
|+|+|||||+||+|+|+|+++||+|||||||||||+||||++++++|||||+|+|||||||||||||||++||+|||++|
T Consensus 634 d~~~~gkr~~lv~~~G~~~~~gd~Ayg~~~e~~lr~~dyp~~~~~~tl~~s~~~w~~~~~l~~n~qsq~~~gr~s~~~~~ 713 (763)
T TIGR00993 634 DQIALGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADFPLGQDQSSLGLSLVDWRGDLALGANIQSQVSIGRSSKLAAR 713 (763)
T ss_pred heeeeccceEEEEecceeeccCcccccceeEEEeecCcCCCCCCcchhceeeeccccceeeeccceeeecccCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCcccceEEEEcCchhhHHHHHHHHHHHHHHHhhccCCCCCCCC
Q 036930 1061 IGLNKQRSGQVTVKLSSSEQLQMALIGIVPIALSGFRSICPGSAGQS 1107 (1109)
Q Consensus 1061 ~~ln~~~~gqi~i~~~ss~~~qial~~~~p~~~~~~~~~~~~~~~~~ 1107 (1109)
||||||++||||||+||||||||||||+|||+++||+|++|+.+++-
T Consensus 714 ~~lnn~~~Gqi~ir~~sse~~~ial~~~~~~~~~l~~~~~~~~~~~~ 760 (763)
T TIGR00993 714 AGLNNKGSGQISVRTSSSDQLQIALVAILPLAKKIYKYYYPQTTENY 760 (763)
T ss_pred ecccCcccceEEEEeccHHHHHHHHHHHHHHHHHHHHhcCcCCCccc
Confidence 99999999999999999999999999999999999999999988763
No 2
>PF11886 DUF3406: Domain of unknown function (DUF3406); InterPro: IPR024283 This C-terminal domain is found in chloroplast protein import component Toc86/159 [] and homologue Toc90 [], and in some uncharacterised proteins.
Probab=100.00 E-value=4.3e-128 Score=1019.58 Aligned_cols=273 Identities=63% Similarity=0.995 Sum_probs=271.0
Q ss_pred CCCCcccccCCCCCCCCCCCCCCcccceeecccCCcceeecccCCCCCCCcCCCCccchhhhhhhhccCCceeEEEEecc
Q 036930 828 DPPATVPAMLPDFALPPSFDGDSPAYRYRLLEATSQLLARPVLDSPSWDHDCGFDGVSLERNFVIANQFPGAFAFQITKD 907 (1109)
Q Consensus 828 ~~~~~~~v~~pd~~lp~sfd~d~p~~ryr~l~~~~~~l~rpvl~~~gwdhd~g~dg~~~e~~~~~~~~~~~~~~~q~~kd 907 (1109)
++|++||||||||+||||||||||+|||||||+++|||||||||||||||||||||||+|++++|+++||++++||||||
T Consensus 1 ~~~~~v~vp~pD~~lP~SFDsD~p~hRYR~Le~~~q~lvRPVld~~GWDHD~G~DGvn~E~~~~l~~~~pas~~~Qv~KD 80 (273)
T PF11886_consen 1 EGPAQVPVPMPDMALPPSFDSDNPAHRYRCLEPTSQWLVRPVLDPHGWDHDCGFDGVNLERSLVLKKKIPASVSGQVTKD 80 (273)
T ss_pred CCCccceecCCcccCCCCcCCCCCceeeEeecCccceeEeecccCCCcccccCccceehhheehhhcCCceEEEEEEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeeeceeeeecCCCCcceeeeeecccccceEEEecccccccccccccccceeEEEeecceeecccccceeeeecc
Q 036930 908 KKEFNIHLDSSISAKFAESGSTMAGLDIQTVGRQLAYIFRSETKFRSFKMNKTSGGVSITLLGENVATGLKIEDEIAVGK 987 (1109)
Q Consensus 908 k~~~~i~~~~~~~~~h~~~~~~~~g~diq~~gk~l~y~~~~et~~kn~~~n~t~~g~s~t~~g~~~~~g~k~ed~~~~gk 987 (1109)
||||+||+|||+||||++++|+|+||||||+||||+||+||||||||||||||+||+|+||||++|++|+||||+|+|||
T Consensus 81 Kkd~~i~~e~s~s~kh~~~~s~~~G~DiQt~gkdLaYt~rgeTkfkn~k~Nkt~~G~S~T~lG~~~~~G~KlED~i~vgk 160 (273)
T PF11886_consen 81 KKDFNIQLESSASYKHGEGGSSMAGFDIQTVGKDLAYTLRGETKFKNFKKNKTTAGLSVTFLGDNVATGLKLEDQISVGK 160 (273)
T ss_pred hhheeEEEeeEEEEEcCCCceEEEEEeeeecCceeEEEEcccceeeccccccccceeEEEEecCeEEEEEeeeeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecceeeecCcccccceeEEeecCCCCCCCCcccccceeeeecccceeeeecceeeeeccCCcceEEEEeccCcc
Q 036930 988 RLVLSGNAGAVQCRGDTAYGANLELRLKDKDFPIGNNNSSLGLSLMNWRGDLNLMANVQSQFSVGRSSKMAVCIGLNKQR 1067 (1109)
Q Consensus 988 ~~~l~~~~g~~~~~~~~ayg~~~e~~lr~~d~p~~~~~~~~~~s~~~~~~~~~~~~nlqsq~~~~r~~~~~~~~~ln~~~ 1067 (1109)
|||||+|+|+|+++||+||||||||+||+||||++|+++|||||+|+|||||||||||||||++||+|||+||||||||+
T Consensus 161 rlklv~s~G~m~~~gd~AYGg~~Ea~lr~kDyPi~~~~~tlglS~m~w~~d~alg~NlqSqf~~gr~skm~v~anlNnk~ 240 (273)
T PF11886_consen 161 RLKLVMSAGAMRGQGDVAYGGNLEATLRGKDYPIGQDQSTLGLSLMKWRGDLALGANLQSQFSVGRGSKMAVRANLNNKG 240 (273)
T ss_pred cEEEEEEccEeeecCceeeceeEEEEeecCCCCCCCcceeeeeEeEecccCeEEeecceEeeecCCCceEEEEecccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEcCchhhHHHHHHHHHHHHHHHhhccC
Q 036930 1068 SGQVTVKLSSSEQLQMALIGIVPIALSGFRSIC 1100 (1109)
Q Consensus 1068 ~gqi~i~~~ss~~~qial~~~~p~~~~~~~~~~ 1100 (1109)
+||||||+|||||+||||+|+|||+++||||++
T Consensus 241 ~Gqisik~sSSe~lqIALi~~vpi~~~l~~r~~ 273 (273)
T PF11886_consen 241 TGQISIKTSSSEQLQIALIGLVPIARSLLRRLR 273 (273)
T ss_pred cceEEEEecchHhHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999974
No 3
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=100.00 E-value=4.1e-34 Score=308.96 Aligned_cols=243 Identities=57% Similarity=0.912 Sum_probs=210.7
Q ss_pred hhhhHHHHHHHHHHHhhhcccccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEe
Q 036930 445 QAVSIEAAKRVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFD 524 (1109)
Q Consensus 445 ~~~~le~a~~~a~qlla~~~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLID 524 (1109)
..+.+++++..+.++++...+.+..+++|+|+|+||||||||+|+|+|...+.++.+.+.|+++..+...++|.+++|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vID 85 (249)
T cd01853 6 FQFFPDAAQTKALELEAKGKEELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIID 85 (249)
T ss_pred cccCcHHHHHHHHHHHHHhhhhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEE
Confidence 34456778888888888888899999999999999999999999999999988888767787788888889999999999
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCC
Q 036930 525 TPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPD 604 (1109)
Q Consensus 525 TPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd 604 (1109)
||||.++..+...+..++..++++++..++|++|||.+++..+.+..|..+++.|++.||..+|+++|+|+||+|..+|+
T Consensus 86 TPGl~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 86 TPGLLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred CCCcCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 99999875434456677888888888778999999999998887777889999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHhhcHHHHHHHHHHHhCCCceeccCCCCHHHHHhhHHHHHhccccceecCCCCCchhhhhHHHHHHHH
Q 036930 605 GPSGLPLSYEVFVGQQSHAIQQRISQAIGDPHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKI 684 (1109)
Q Consensus 605 ~~~~~p~sieefV~q~~~~LQelI~qc~gr~~lfn~s~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~LllLcya~k~ 684 (1109)
+++..|.+++.+...+.+..++++.+..+... ..+|+.+++|++.|++|+.+++|||||+.|...|+++||+.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-----~~~pv~lven~~~c~~n~~~~~vlp~g~~w~~~~~~~~~~~~~ 240 (249)
T cd01853 166 GLNGTPFSYDRFVAQRSHIVQQAIQQAAGDPR-----LENPVSLVENHPRCRKNREGEKVLPNGTVWKPQLLLLCYSVKL 240 (249)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHhhhhccCcc-----ccCCEEEEeCCCcccCCCCCCeECCCCCccHHHHHHHHHHHHh
Confidence 99999999988876766666666666554433 3379999999999999999999999999999999999999999
Q ss_pred HHHhhccc
Q 036930 685 LSEANSVS 692 (1109)
Q Consensus 685 L~Ea~g~l 692 (1109)
+.++.-++
T Consensus 241 ~~~~~~~~ 248 (249)
T cd01853 241 LSEANILL 248 (249)
T ss_pred cccccccc
Confidence 88766543
No 4
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.97 E-value=5e-30 Score=283.84 Aligned_cols=202 Identities=38% Similarity=0.626 Sum_probs=173.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
...++|+|+|++|||||||+|+|+|+.++.++.+.+.|.++......++|+++.||||||+.+.. ..++.....++.
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~---~~~e~~~~~ik~ 112 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG---YINDQAVNIIKR 112 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH---HHHHHHHHHHHH
Confidence 56789999999999999999999999988888775555555555566789999999999999853 234455566666
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCCCCCccHHHHHhhcHHHHHHH
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQR 627 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~~~p~sieefV~q~~~~LQel 627 (1109)
++...++|+||||++++..+.+..|..+++.|++.||..+|+++||||||+|..+|++ .+|++|+.++.+.||++
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~-----~~~e~fv~~~~~~lq~~ 187 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDG-----LEYNDFFSKRSEALLRV 187 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCC-----CCHHHHHHhcHHHHHHH
Confidence 6666789999999999877777778999999999999999999999999999988765 48999999999999999
Q ss_pred HHHHhCCCceeccCCCCHHHHHhhHHHHHhccccceecCCCCCchhhhhH
Q 036930 628 ISQAIGDPHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLL 677 (1109)
Q Consensus 628 I~qc~gr~~lfn~s~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~Lll 677 (1109)
|+++.+..+.......+|+.|+||++.|++|..++++||||+.|...|+.
T Consensus 188 i~~~~~~~~~~~~~~~~pv~lven~~~c~~n~~ge~vlp~g~~w~~~l~~ 237 (313)
T TIGR00991 188 IHSGAGLKKRDYQDFPIPVALVENSGRCKKNESDEKILPDGTPWIPKLMK 237 (313)
T ss_pred HHHHhcccccccccccCCEEEEecCCcccCCCCCCeECCCCCccHHHHHH
Confidence 99999988765555558999999999999999999999999999877643
No 5
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.95 E-value=5e-27 Score=268.34 Aligned_cols=287 Identities=20% Similarity=0.226 Sum_probs=219.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHhh--h
Q 036930 388 DVTKDKLSDEEKRKIEKIQILRVKFLRLVQRLGHS---FDDSVVAQVLYRLALALGGHSSQAVSIEAAKRVAEQHEI--E 462 (1109)
Q Consensus 388 a~~~~Al~~e~g~l~~kLe~~RvkLLrLlarLgas---pEddlvaqVL~rl~~a~~~~~~~~~~le~a~~~a~qlla--~ 462 (1109)
.+++.|++++.|.++..++.||..|+++++.+++. ||+++.......+.. .+..+.+.+.+++. .
T Consensus 140 ~a~r~A~~~l~G~ls~~i~~lr~~li~~~a~vEa~IDfpeedi~~~~~~~i~~----------~l~~~~~~l~~ll~~~~ 209 (454)
T COG0486 140 QAARIALRQLQGALSQLINELREALLELLAQVEANIDFPEEDIEELVLEKIRE----------KLEELIAELDELLATAK 209 (454)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHheEeCCCCcccccchhHHHHHH----------HHHHHHHHHHHHHHhhh
Confidence 56789999999999999999999999999999988 777554444444443 56778888888887 3
Q ss_pred cccccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHH
Q 036930 463 DKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 463 ~~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
.++.++.|++|+++|+||||||||+|+|+++++++|+++ ||||| +.+.+..++|++|.++||+|++++.. .....++
T Consensus 210 ~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI-~GTTRDviee~i~i~G~pv~l~DTAGiRet~d-~VE~iGI 287 (454)
T COG0486 210 QGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDI-AGTTRDVIEEDINLNGIPVRLVDTAGIRETDD-VVERIGI 287 (454)
T ss_pred hhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCC-CCCccceEEEEEEECCEEEEEEecCCcccCcc-HHHHHHH
Confidence 578999999999999999999999999999999999998 99999 99999999999999999999998763 3344555
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCC------CC-CccHH
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPS------GL-PLSYE 614 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~------~~-p~sie 614 (1109)
.+..+ .++ ++|+||||++.+.. .+..|..++..+. ..+++++|+||+|+..+.... +. -+.+.
T Consensus 288 eRs~~-~i~--~ADlvL~v~D~~~~-~~~~d~~~~~~~~------~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iS 357 (454)
T COG0486 288 ERAKK-AIE--EADLVLFVLDASQP-LDKEDLALIELLP------KKKPIIVVLNKADLVSKIELESEKLANGDAIISIS 357 (454)
T ss_pred HHHHH-HHH--hCCEEEEEEeCCCC-CchhhHHHHHhcc------cCCCEEEEEechhcccccccchhhccCCCceEEEE
Confidence 55543 454 38999999766553 3344555555221 248999999999997654321 00 01111
Q ss_pred HHHhhcHHHHHHHHHHHhCCC-----ceeccCCCCHHHHHhhHHHHHhccccceecCCCCCchhhhhHHHHHHHHHHHhh
Q 036930 615 VFVGQQSHAIQQRISQAIGDP-----HLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKILSEAN 689 (1109)
Q Consensus 615 efV~q~~~~LQelI~qc~gr~-----~lfn~s~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~LllLcya~k~L~Ea~ 689 (1109)
..-+++.+.|.+.|.++.... ..+..+.||...|.++..++... ..-+..+.+.++...+|+.|.+.|++++
T Consensus 358 a~t~~Gl~~L~~~i~~~~~~~~~~~~~~~i~~~Rh~~~L~~a~~~l~~a---~~~~~~~~~~dl~a~dLr~A~~~LgeIt 434 (454)
T COG0486 358 AKTGEGLDALREAIKQLFGKGLGNQEGLFLSNLRHIQLLEQAAEHLEDA---LQQLELGQPLDLLAEDLRLAQEALGEIT 434 (454)
T ss_pred ecCccCHHHHHHHHHHHHhhcccccccceeecHHHHHHHHHHHHHHHHH---HhhhhccCChhhhHHHHHHHHHHHHHhh
Confidence 112457778888888876543 24667778888888888777752 2222223366889999999999999999
Q ss_pred ccccccCCCC
Q 036930 690 SVSKSQGPAP 699 (1109)
Q Consensus 690 g~lk~qe~l~ 699 (1109)
|....++.++
T Consensus 435 G~~~~edlLd 444 (454)
T COG0486 435 GEFVSEDLLD 444 (454)
T ss_pred CCCchHHHHH
Confidence 9999988887
No 6
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.94 E-value=2.7e-26 Score=241.52 Aligned_cols=198 Identities=29% Similarity=0.441 Sum_probs=149.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecC-CCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINA-FEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~-i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
+||+|+|+||+||||++|+|+|...+.++. ..+.|+.+......++|++|+|||||||.++.. ....+.+.+.+++
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~---~~~~~~~~i~~~l 77 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG---SDEEIIREIKRCL 77 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE---EHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcc---cHHHHHHHHHHHH
Confidence 689999999999999999999999988764 346677788888899999999999999988764 2345555566554
Q ss_pred h--cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCCCCCccHHHHHhhc-HHHHHH
Q 036930 550 K--KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQ-SHAIQQ 626 (1109)
Q Consensus 550 k--~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~~~p~sieefV~q~-~~~LQe 626 (1109)
. .+++|+||||++++ +++..+..+++.+.+.||..+|+++|||||++|.+.+. .+++|+... ...|++
T Consensus 78 ~~~~~g~ha~llVi~~~--r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~-------~~~~~l~~~~~~~l~~ 148 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLG--RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD-------SLEDYLKKESNEALQE 148 (212)
T ss_dssp HHTTT-ESEEEEEEETT--B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT-------THHHHHHHHHHHHHHH
T ss_pred HhccCCCeEEEEEEecC--cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc-------cHHHHHhccCchhHhH
Confidence 3 45799999998888 55667899999999999999999999999999987643 488999744 367999
Q ss_pred HHHHHhCCCceeccC----CCCHHHHHhhHHHHHhccccceecCCCCCchhhhhHHHHHHHHHHHhhcccc
Q 036930 627 RISQAIGDPHLMNLN----MMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKILSEANSVSK 693 (1109)
Q Consensus 627 lI~qc~gr~~lfn~s----~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~LllLcya~k~L~Ea~g~lk 693 (1109)
++.+|.+||++|+++ .....++.+ ++.+ +..|+..|++. ||+.+++.++....+
T Consensus 149 li~~c~~R~~~f~n~~~~~~~~~~qv~~---Ll~~--ie~mv~~n~g~--------~~~~~~~~~~~~~~~ 206 (212)
T PF04548_consen 149 LIEKCGGRYHVFNNKTKDKEKDESQVSE---LLEK--IEEMVQENGGQ--------YYSNEMFEEAEERKE 206 (212)
T ss_dssp HHHHTTTCEEECCTTHHHHHHHHHHHHH---HHHH--HHHHHHHTTTT----------B-HHHHHHHHCCH
T ss_pred HhhhcCCEEEEEeccccchhhhHHHHHH---HHHH--HHHHHHHcCCC--------CCChHHHHHHHHHHH
Confidence 999999999999887 112344444 4444 46788888876 899999998876544
No 7
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.91 E-value=3.5e-24 Score=221.39 Aligned_cols=183 Identities=22% Similarity=0.320 Sum_probs=140.0
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCC-ceeEEEEEEEEECCEEEEEEeCCCCCCCCcch-hhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEP-ATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGR-TVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~p-gTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~-~~~eeIl~~Ikk~ 548 (1109)
++|+|+|+||+|||||+|+|+|+..+.++...+ .|..+......++|++++||||||+.++.... .....+.+.+..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~- 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL- 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh-
Confidence 589999999999999999999999887765333 45558888888999999999999999875321 122333333322
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCCCCCccHHHHHhhcHHHHHHHH
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRI 628 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~~~p~sieefV~q~~~~LQelI 628 (1109)
...++|+||||++++. +...+..+++.+++.||..+|+++|+|+||+|.+.+. ++++|+......|++++
T Consensus 80 -~~~g~~~illVi~~~~--~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~-------~~~~~~~~~~~~l~~l~ 149 (196)
T cd01852 80 -SAPGPHAFLLVVPLGR--FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG-------TLEDYLENSCEALKRLL 149 (196)
T ss_pred -cCCCCEEEEEEEECCC--cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC-------cHHHHHHhccHHHHHHH
Confidence 2257999999988876 5556889999999999999999999999999987532 68999977778999999
Q ss_pred HHHhCCCceeccCC---CCHHHHHhhHHHHHhccccceecCCCC
Q 036930 629 SQAIGDPHLMNLNM---MHPVSLVENHQSCQKNRIGEIVLPNGQ 669 (1109)
Q Consensus 629 ~qc~gr~~lfn~s~---r~pv~LvEn~~l~~kn~ig~~VLpng~ 669 (1109)
.+|+++|+.|++.. .+..++.+. +++ +..++..|+.
T Consensus 150 ~~c~~r~~~f~~~~~~~~~~~q~~~L---l~~--i~~~~~~~~~ 188 (196)
T cd01852 150 EKCGGRYVAFNNKAKGEEQEQQVKEL---LAK--VESMVKENGG 188 (196)
T ss_pred HHhCCeEEEEeCCCCcchhHHHHHHH---HHH--HHHHHHhcCC
Confidence 99999999998875 234555553 333 3445555554
No 8
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.86 E-value=3.1e-20 Score=215.84 Aligned_cols=284 Identities=17% Similarity=0.146 Sum_probs=191.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CchhHHH-HHHHHHHHhhCCCCchhhhHHHHHHHHHHHhhh-
Q 036930 388 DVTKDKLSDEEKRKIEKIQILRVKFLRLVQRLGHS---FDDSVVA-QVLYRLALALGGHSSQAVSIEAAKRVAEQHEIE- 462 (1109)
Q Consensus 388 a~~~~Al~~e~g~l~~kLe~~RvkLLrLlarLgas---pEddlva-qVL~rl~~a~~~~~~~~~~le~a~~~a~qlla~- 462 (1109)
.+++.|++++.|.++++++.||..|+.+++.+++. ||++... ++.. .+..+...+..++..
T Consensus 130 ~~~~~A~~~l~G~ls~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~--------------~l~~~~~~l~~ll~~~ 195 (442)
T TIGR00450 130 KVKDIALNKLAGELDQKIEAIRKSLLQLLAQVEVNIDYEEDDDEQDSLNQ--------------LLLSIIAELKDILNSY 195 (442)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHeeEECCcCCCCccHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 67799999999999999999999999999999987 6654321 2222 344555555555542
Q ss_pred cccccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHH
Q 036930 463 DKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 463 ~~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
..+.++.+++|+|+|+||||||||+|+|++...+.++.+ |+||+ +......++|.++.+|||||+.+... ......+
T Consensus 196 ~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~-pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~-~ie~~gi 273 (442)
T TIGR00450 196 KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDI-KGTTRDVVEGDFELNGILIKLLDTAGIREHAD-FVERLGI 273 (442)
T ss_pred HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcEEEEEEEEEEECCEEEEEeeCCCcccchh-HHHHHHH
Confidence 236788899999999999999999999999888788887 78877 67777888999999999999976431 1111122
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCC-----CCC---ccH
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPS-----GLP---LSY 613 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~-----~~p---~si 613 (1109)
.+ ...+++ .+|++++|++++... ..++. ++..+.. ..+|+|+|+||+|+...+... +.+ .+-
T Consensus 274 ~~-~~~~~~--~aD~il~V~D~s~~~-s~~~~-~l~~~~~-----~~~piIlV~NK~Dl~~~~~~~~~~~~~~~~~~vSa 343 (442)
T TIGR00450 274 EK-SFKAIK--QADLVIYVLDASQPL-TKDDF-LIIDLNK-----SKKPFILVLNKIDLKINSLEFFVSSKVLNSSNLSA 343 (442)
T ss_pred HH-HHHHHh--hCCEEEEEEECCCCC-ChhHH-HHHHHhh-----CCCCEEEEEECccCCCcchhhhhhhcCCceEEEEE
Confidence 11 223333 489999998776422 12222 3333321 147899999999985431100 000 000
Q ss_pred HH-HHhhcHHHHHHHHHHHhCC-----CceeccCCCCHHHHHhhHHHHHhccccceecCCCCCchhhhhHHHHHHHHHHH
Q 036930 614 EV-FVGQQSHAIQQRISQAIGD-----PHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKILSE 687 (1109)
Q Consensus 614 ee-fV~q~~~~LQelI~qc~gr-----~~lfn~s~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~LllLcya~k~L~E 687 (1109)
.. =+.+..+.|.+.+.+.... ...+..+.||...|.++...+.. ....+.++.+|++.+++|+.|...|++
T Consensus 344 k~~gI~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~r~~~~l~~a~~~l~~---~~~~~~~~~~~el~a~~l~~a~~~l~~ 420 (442)
T TIGR00450 344 KQLKIKALVDLLTQKINAFYSKERVELDDYLISSWQAMILLEKAIAQLQQ---FLSKLDRQLFLDMLVFHLREAINCLGQ 420 (442)
T ss_pred ecCCHHHHHHHHHHHHHHHhcccccccccceEhHHHHHHHHHHHHHHHHH---HHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 00 0012233444444443221 12344567788888888777764 233445677899999999999999999
Q ss_pred hhccccccCCCCC
Q 036930 688 ANSVSKSQGPAPK 700 (1109)
Q Consensus 688 a~g~lk~qe~l~~ 700 (1109)
++|....++.++.
T Consensus 421 itG~~~~ediLd~ 433 (442)
T TIGR00450 421 VTGEVVTEDVLDE 433 (442)
T ss_pred HhCCCCcHHHHHH
Confidence 9999999888873
No 9
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.86 E-value=1.3e-20 Score=219.29 Aligned_cols=286 Identities=18% Similarity=0.180 Sum_probs=193.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHhhh--
Q 036930 388 DVTKDKLSDEEKRKIEKIQILRVKFLRLVQRLGHS---FDDSVVAQVLYRLALALGGHSSQAVSIEAAKRVAEQHEIE-- 462 (1109)
Q Consensus 388 a~~~~Al~~e~g~l~~kLe~~RvkLLrLlarLgas---pEddlvaqVL~rl~~a~~~~~~~~~~le~a~~~a~qlla~-- 462 (1109)
.+++.|++++.|.+.+.+..||.+|+++++.+++. ||+++.......+.. .+..++..+.+++..
T Consensus 138 ~~~~~al~~l~G~l~~~~~~~r~~l~~~~a~iea~iDf~ee~~~~~~~~~i~~----------~i~~l~~~l~~l~~~~~ 207 (449)
T PRK05291 138 AAARLALRQLQGALSKLINELREELLELLALVEAAIDFPEEDIEFLSDEKILE----------KLEELIAELEALLASAR 207 (449)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHheEEccCCCCCcccccHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999876 665443212222221 455666677666653
Q ss_pred cccccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHH
Q 036930 463 DKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 463 ~~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
.++.++.+++|+++|.||||||||+|+|++...+.++.. ++||+ +......++|.++.||||||+.++.. ......+
T Consensus 208 ~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~-~ie~~gi 285 (449)
T PRK05291 208 QGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDI-AGTTRDVIEEHINLDGIPLRLIDTAGIRETDD-EVEKIGI 285 (449)
T ss_pred HHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCcccccEEEEEEECCeEEEEEeCCCCCCCcc-HHHHHHH
Confidence 346677889999999999999999999999887778875 77776 66677778999999999999976431 1111112
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCC---CCC-ccHHHHH
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPS---GLP-LSYEVFV 617 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~---~~p-~sieefV 617 (1109)
.+.. ..+. .+|+++||++.+... ...+..++. . ....|+++|+||+|+....... ..+ ..+...-
T Consensus 286 ~~~~-~~~~--~aD~il~VvD~s~~~-s~~~~~~l~---~----~~~~piiiV~NK~DL~~~~~~~~~~~~~~i~iSAkt 354 (449)
T PRK05291 286 ERSR-EAIE--EADLVLLVLDASEPL-TEEDDEILE---E----LKDKPVIVVLNKADLTGEIDLEEENGKPVIRISAKT 354 (449)
T ss_pred HHHH-HHHH--hCCEEEEEecCCCCC-ChhHHHHHH---h----cCCCCcEEEEEhhhccccchhhhccCCceEEEEeeC
Confidence 2222 2333 489999998775432 112333322 2 1247999999999986532210 000 0000011
Q ss_pred hhcHHHHHHHHHHHhCC------CceeccCCCCHHHHHhhHHHHHhccccceecCCCCCchhhhhHHHHHHHHHHHhhcc
Q 036930 618 GQQSHAIQQRISQAIGD------PHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKILSEANSV 691 (1109)
Q Consensus 618 ~q~~~~LQelI~qc~gr------~~lfn~s~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~LllLcya~k~L~Ea~g~ 691 (1109)
+.+.+.|.+.|.+.... ...+..+.||...+..+...|... ...+.++..|++.+.+|+.+.+.|++++|.
T Consensus 355 g~GI~~L~~~L~~~l~~~~~~~~~~~~~~~~R~~~~l~~a~~~l~~~---~~~~~~~~~~~~~a~~l~~a~~~l~~i~G~ 431 (449)
T PRK05291 355 GEGIDELREAIKELAFGGFGGNQEGVFLTNARHLEALERALEHLERA---LEGLESGLPLELLAEDLRLALEALGEITGE 431 (449)
T ss_pred CCCHHHHHHHHHHHHhhccccccccceehHHHHHHHHHHHHHHHHHH---HHHHHcCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 34555555555554322 112445567778888877777642 223345667899999999999999999999
Q ss_pred ccccCCCC
Q 036930 692 SKSQGPAP 699 (1109)
Q Consensus 692 lk~qe~l~ 699 (1109)
...++.++
T Consensus 432 ~~~e~iLd 439 (449)
T PRK05291 432 VTSEDLLD 439 (449)
T ss_pred CChHHHHH
Confidence 99988887
No 10
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.80 E-value=7.1e-22 Score=224.05 Aligned_cols=300 Identities=16% Similarity=0.132 Sum_probs=183.6
Q ss_pred hHHHHHHHHHHHhhhcccccCCCcEEEEEecCCCChhHHHHHHhCCC-----cceecCCCCceeEEEEEEEEECCEEEEE
Q 036930 448 SIEAAKRVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEE-----KSTINAFEPATSSVKVIAGLVHGVKIRI 522 (1109)
Q Consensus 448 ~le~a~~~a~qlla~~~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~-----va~Vs~i~pgTTrv~e~~~~i~G~~VtL 522 (1109)
.+..+...+++.+... -...++|+|+|.+|+|||||||+|.|-. .+.++.. .||.....|.+.+-.+|++
T Consensus 16 ~~~~~~s~i~~~l~~~---~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~--etT~~~~~Y~~p~~pnv~l 90 (376)
T PF05049_consen 16 NLQEVVSKIREALKDI---DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV--ETTMEPTPYPHPKFPNVTL 90 (376)
T ss_dssp -HHHHHHHHHHHHHHH---HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH--SCCTS-EEEE-SS-TTEEE
T ss_pred CHHHHHHHHHHHHHHh---hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC--cCCCCCeeCCCCCCCCCeE
Confidence 3344444444444321 1346899999999999999999998743 2333332 2444333344455567999
Q ss_pred EeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 523 FDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 523 IDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
||.||++.+.... ...+..+. -..+|+||++ .+.++..++..+++.|+.+ .+++++|.||+|..-
T Consensus 91 WDlPG~gt~~f~~---~~Yl~~~~----~~~yD~fiii---~s~rf~~ndv~La~~i~~~-----gK~fyfVRTKvD~Dl 155 (376)
T PF05049_consen 91 WDLPGIGTPNFPP---EEYLKEVK----FYRYDFFIII---SSERFTENDVQLAKEIQRM-----GKKFYFVRTKVDSDL 155 (376)
T ss_dssp EEE--GGGSS--H---HHHHHHTT----GGG-SEEEEE---ESSS--HHHHHHHHHHHHT-----T-EEEEEE--HHHHH
T ss_pred EeCCCCCCCCCCH---HHHHHHcc----ccccCEEEEE---eCCCCchhhHHHHHHHHHc-----CCcEEEEEecccccH
Confidence 9999998876432 23333321 2248998887 3345556788899999886 589999999999732
Q ss_pred CCCCCCCCccHHHHHhhcHHHHHHHHHHHhC--------CCceeccCCCCHHHHHhhHHHHHhccccceecCCCCCchhh
Q 036930 603 PDGPSGLPLSYEVFVGQQSHAIQQRISQAIG--------DPHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQ 674 (1109)
Q Consensus 603 pd~~~~~p~sieefV~q~~~~LQelI~qc~g--------r~~lfn~s~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~ 674 (1109)
.+....+|.++.+ .+.|+++.+.|.. ...+|..+..++... .+|.|.. .....||...+..+.
T Consensus 156 ~~~~~~~p~~f~~-----e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~y--DFp~L~~--tL~~dLp~~Kr~~fl 226 (376)
T PF05049_consen 156 YNERRRKPRTFNE-----EKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKY--DFPKLEE--TLEKDLPAHKRHAFL 226 (376)
T ss_dssp HHHHCC-STT--H-----HTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTST--THHHHHH--HHHHHS-GGGHHHHH
T ss_pred hhhhccCCcccCH-----HHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccC--ChHHHHH--HHHHHhHHHHHHHHH
Confidence 2221223334421 2334444444432 234454433321110 1122221 234568888888999
Q ss_pred hhHHHHHHHHHHHhhccccccCCCCCccCCCC-CCCchhhHh-hhhhccCCCCCcccccCCCCCCchhhhhhhcCCCccc
Q 036930 675 LLLLCFSLKILSEANSVSKSQGPAPKKFFGFR-RPAPLSYFL-SSLLQSHTHPKLSADQGGDGVESDVELVDFSGSDLED 752 (1109)
Q Consensus 675 LllLcya~k~L~Ea~g~lk~qe~l~~~~~g~r-~~P~lp~Ll-SsLlq~r~~~k~~~~~~g~d~ds~~e~~~~~~~~~ed 752 (1109)
+.+..++.+++++....++.+.|+.+...++. .+|.++.+. .++.....+++.|+..||.||+|...+++..+.+++|
T Consensus 227 lsLp~is~~~I~kKk~~lk~~Iw~~Al~s~~~a~iP~~g~~~~~D~~~L~~~l~~Yr~~FGLDd~SL~~lA~~~g~~~~~ 306 (376)
T PF05049_consen 227 LSLPNISEAAIEKKKESLKQKIWLEALKSAAVATIPVPGLSSACDLEILEKCLNQYRSSFGLDDESLQKLAQDTGKPVEE 306 (376)
T ss_dssp HHS---SHHHHHHHHHHHHHHHHHHHHHT--BSS-CCCSS--HHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHTTS-HHH
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccccccCHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999998888876 888888875 7888889999999999999999999999999999999
Q ss_pred hhccccCCCCCccchHH--HHHhhHH
Q 036930 753 EDEYDQLPPFKPLRKSQ--VAKLSKE 776 (1109)
Q Consensus 753 e~eydqlP~f~~l~k~q--~~~l~~~ 776 (1109)
.+...++|.++.+.+.+ .++|++-
T Consensus 307 lk~~iksp~~~~~~~~~~~~~~l~~~ 332 (376)
T PF05049_consen 307 LKSIIKSPLLLSLIKDDSILEKLTKY 332 (376)
T ss_dssp HHCTSSGGGTTSSBSSSHHHHHHHHH
T ss_pred HHHHHcCHhhhhccChHHHHHHHHHH
Confidence 99999999998888766 3666664
No 11
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.7e-17 Score=190.45 Aligned_cols=293 Identities=14% Similarity=0.133 Sum_probs=184.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc----hhHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHhh--
Q 036930 388 DVTKDKLSDEEKRKIEKIQILRVKFLRLVQRLGHSFD----DSVVAQVLYRLALALGGHSSQAVSIEAAKRVAEQHEI-- 461 (1109)
Q Consensus 388 a~~~~Al~~e~g~l~~kLe~~RvkLLrLlarLgaspE----ddlvaqVL~rl~~a~~~~~~~~~~le~a~~~a~qlla-- 461 (1109)
.|+..|+.+..++....+-.||..++.+++.+++.-+ ..+.......+. -....++..+..++.
T Consensus 190 ~q~~~Al~~v~g~~~~l~~~~r~~lIe~~a~l~a~idf~e~~~l~~~~t~~~~----------~~~~~l~d~v~s~l~~~ 259 (531)
T KOG1191|consen 190 SQRRAALDEVAGEALALCFGWRKILIEALAGLEARIDFEEERPLEEIETVEIF----------IESLSLLDDVLSHLNKA 259 (531)
T ss_pred hhhhhhhhhhcchhHHhhhhHHHHHHHHHhccceeechhhcCchhhccchhhh----------hHHHHHHHHHHHHHHhh
Confidence 6788999999999999888899999999999887722 111111000110 022234555555554
Q ss_pred hcccccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHH
Q 036930 462 EDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKK 540 (1109)
Q Consensus 462 ~~~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~ee 540 (1109)
+..+.++.++.|+|+|+||||||||+|+|+.+++.+|++. ||||| ..+...+++|++|+|+||+|+++...+......
T Consensus 260 ~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv-~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~g 338 (531)
T KOG1191|consen 260 DEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPV-PGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALG 338 (531)
T ss_pred hhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCC-CCcchhhheeEeecCCeEEEEEeccccccccCChhHHHh
Confidence 3567899999999999999999999999999999999996 99999 888999999999999999999994444445566
Q ss_pred HHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhh-CCC------CCCeEEEEEeccCCCCC-CCCCCCCcc
Q 036930 541 TLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSL-GSS------VWQNAILCLTHAASEPP-DGPSGLPLS 612 (1109)
Q Consensus 541 Il~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~F-G~~------v~k~vIVVLTKaD~l~p-d~~~~~p~s 612 (1109)
+.+..++. . .+|+|++|+++... ....+..+.+.|...- |-. ..+++|+|.||.|+..+ ......|..
T Consensus 339 I~rA~k~~-~--~advi~~vvda~~~-~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~ 414 (531)
T KOG1191|consen 339 IERARKRI-E--RADVILLVVDAEES-DTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV 414 (531)
T ss_pred HHHHHHHH-h--hcCEEEEEeccccc-ccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCcee
Confidence 66665543 3 38999999777322 2223555444444321 111 12789999999999875 111111111
Q ss_pred HHH---------------HHhhcHHHHHHHHHHHhCCCce-e------ccCCCCHHHHHhhHH-HHHhccccceecCCCC
Q 036930 613 YEV---------------FVGQQSHAIQQRISQAIGDPHL-M------NLNMMHPVSLVENHQ-SCQKNRIGEIVLPNGQ 669 (1109)
Q Consensus 613 iee---------------fV~q~~~~LQelI~qc~gr~~l-f------n~s~r~pv~LvEn~~-l~~kn~ig~~VLpng~ 669 (1109)
+.. ..+++...|...+.+...+.+. . ..+.+..+.+..... .+.. -.+......
T Consensus 415 ~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~~~l~~---~~~~k~~~~ 491 (531)
T KOG1191|consen 415 YPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAAPELER---RFLAKQLKE 491 (531)
T ss_pred ccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhcCCCCCchhhcchhHHHHHHhhhhhhHHH---HHHhhhccc
Confidence 111 1156666777766665544432 1 111111111111100 0000 011111223
Q ss_pred CchhhhhHHHHHHHHHHHhhccccccCCC
Q 036930 670 SWRPQLLLLCFSLKILSEANSVSKSQGPA 698 (1109)
Q Consensus 670 ~W~~~LllLcya~k~L~Ea~g~lk~qe~l 698 (1109)
+..++...++++...+.++++-...++.+
T Consensus 492 D~~la~~~lR~a~~~i~r~tggggte~vl 520 (531)
T KOG1191|consen 492 DIDLAGEPLRLAQRSIARITGGGGTEEVL 520 (531)
T ss_pred chhhccchHHHHHhhhcccCCCCchhhHH
Confidence 45667777889888888887754444444
No 12
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.64 E-value=9.1e-16 Score=176.23 Aligned_cols=198 Identities=19% Similarity=0.227 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhh--------CCC--------------------Cchhh
Q 036930 396 DEEKRKIEKIQILRVKFLRLVQRLGHSFDDSVVAQVLYRLALAL--------GGH--------------------SSQAV 447 (1109)
Q Consensus 396 ~e~g~l~~kLe~~RvkLLrLlarLgaspEddlvaqVL~rl~~a~--------~~~--------------------~~~~~ 447 (1109)
....+...++++..+-|+-+..+.|++|+|+.++++|++..+.. ... +.+.-
T Consensus 72 ~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~ 151 (444)
T COG1160 72 LIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGR 151 (444)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhcc
Confidence 33445556777778888888889999999988888888652211 110 11112
Q ss_pred hHHHHHHHHHHHhh--hccccc--CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEE
Q 036930 448 SIEAAKRVAEQHEI--EDKDDM--DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRI 522 (1109)
Q Consensus 448 ~le~a~~~a~qlla--~~~e~L--~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtL 522 (1109)
.+..+...+.+.+. +..+.. ..+++|+++|+||||||||+|+|+|+++..+++. +|||| ......+++|+++++
T Consensus 152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~-aGTTRD~I~~~~e~~~~~~~l 230 (444)
T COG1160 152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDI-AGTTRDSIDIEFERDGRKYVL 230 (444)
T ss_pred CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCC-CCccccceeeeEEECCeEEEE
Confidence 22356666666652 111122 3579999999999999999999999999999996 99998 778888999999999
Q ss_pred EeCCCCCCCCc--chhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCC
Q 036930 523 FDTPGLRSPAI--GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAAS 600 (1109)
Q Consensus 523 IDTPGL~ds~~--~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~ 600 (1109)
|||+|++.... +....-.+.+.++ .+. .+++|++|++... .+...|.+++..+.+. .++++||+||||+
T Consensus 231 iDTAGiRrk~ki~e~~E~~Sv~rt~~-aI~--~a~vvllviDa~~-~~~~qD~~ia~~i~~~-----g~~~vIvvNKWDl 301 (444)
T COG1160 231 IDTAGIRRKGKITESVEKYSVARTLK-AIE--RADVVLLVIDATE-GISEQDLRIAGLIEEA-----GRGIVIVVNKWDL 301 (444)
T ss_pred EECCCCCcccccccceEEEeehhhHh-HHh--hcCEEEEEEECCC-CchHHHHHHHHHHHHc-----CCCeEEEEEcccc
Confidence 99999987531 1111112222222 233 3799999976553 3455688888888776 5899999999998
Q ss_pred CCC
Q 036930 601 EPP 603 (1109)
Q Consensus 601 l~p 603 (1109)
...
T Consensus 302 ~~~ 304 (444)
T COG1160 302 VEE 304 (444)
T ss_pred CCc
Confidence 764
No 13
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.63 E-value=8.6e-16 Score=156.57 Aligned_cols=120 Identities=19% Similarity=0.290 Sum_probs=85.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
++|+|+|.||||||||+|+|+|.. ..++.+ ||||. .......+.+.++.+|||||+.+-... ...+.+ .++++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~-pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~-s~ee~v---~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNW-PGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSK-SEEERV---ARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEES-TTSSSEEEEEEEEETTEEEEEEE----SSSSSS-SHHHHH---HHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCC-CCCCeeeeeEEEEecCceEEEEECCCcccCCCC-CcHHHH---HHHHH
Confidence 589999999999999999999999 678887 77765 777788889999999999999774321 122332 23344
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPD 604 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd 604 (1109)
...++|++++|++.+. .. .+..++..+.+. ..|+++|+||+|.....
T Consensus 75 ~~~~~D~ii~VvDa~~--l~-r~l~l~~ql~e~-----g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 75 LSEKPDLIIVVVDATN--LE-RNLYLTLQLLEL-----GIPVVVVLNKMDEAERK 121 (156)
T ss_dssp HHTSSSEEEEEEEGGG--HH-HHHHHHHHHHHT-----TSSEEEEEETHHHHHHT
T ss_pred hhcCCCEEEEECCCCC--HH-HHHHHHHHHHHc-----CCCEEEEEeCHHHHHHc
Confidence 4457999999976654 32 245666666655 48999999999987643
No 14
>COG1159 Era GTPase [General function prediction only]
Probab=99.62 E-value=2.7e-15 Score=165.04 Aligned_cols=123 Identities=24% Similarity=0.349 Sum_probs=100.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+.-|+++|+||||||||+|.|+|.+.+++++- |.||| ......+.+..++++|||||++.+.. ..++.+.+.+...
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k-~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~--~l~~~m~~~a~~s 82 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH--ALGELMNKAARSA 82 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCC-cchhhhheeEEEEcCCceEEEEeCCCCCCcch--HHHHHHHHHHHHH
Confidence 45799999999999999999999999999994 99999 55666677789999999999998743 4667778888777
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPP 603 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~p 603 (1109)
++. +|++|||++.+. .....|..+++.+++. ..|+++++||+|...+
T Consensus 83 l~d--vDlilfvvd~~~-~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~ 129 (298)
T COG1159 83 LKD--VDLILFVVDADE-GWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKP 129 (298)
T ss_pred hcc--CcEEEEEEeccc-cCCccHHHHHHHHhhc-----CCCeEEEEEccccCCc
Confidence 764 999999987765 2334577788877762 4799999999998764
No 15
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.60 E-value=2.3e-14 Score=162.77 Aligned_cols=195 Identities=15% Similarity=0.109 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHhhh--cc
Q 036930 388 DVTKDKLSDEEKRKIEKIQILRVKFLRLVQRLGHS-FDDSVVAQVLYRLALALGGHSSQAVSIEAAKRVAEQHEIE--DK 464 (1109)
Q Consensus 388 a~~~~Al~~e~g~l~~kLe~~RvkLLrLlarLgas-pEddlvaqVL~rl~~a~~~~~~~~~~le~a~~~a~qlla~--~~ 464 (1109)
+..+.+++++.+.+...+..|+. |.++.+.+|.. |++... .+.++... ..+..++..+.++... .+
T Consensus 112 ~klqv~la~l~~~l~r~~~~~~~-l~~~~~~i~~~g~gE~~~-~~~~~~i~---------~ri~~l~~~L~~~~~~~~~~ 180 (351)
T TIGR03156 112 GKLQVELAQLKYLLPRLVGGWTH-LSRQGGGIGTRGPGETQL-ETDRRLIR---------ERIAQLKKELEKVEKQRERQ 180 (351)
T ss_pred HHHHHHHHhccchhhhhhhhHHH-HHhhcCCCCCCCCChhHH-HHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 55677899999999999999988 77766666664 454322 12222211 1455666666665542 22
Q ss_pred cccC---CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEE-CCEEEEEEeCCCCCCCCcchhhhH
Q 036930 465 DDMD---FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLV-HGVKIRIFDTPGLRSPAIGRTVNK 539 (1109)
Q Consensus 465 e~L~---~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i-~G~~VtLIDTPGL~ds~~~~~~~e 539 (1109)
...+ ..++|+|+|.||||||||+|+|++.. +.+.+. ++||. +......+ +|.++.||||||+..... ....+
T Consensus 181 r~~r~~~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~-~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~-~~lie 257 (351)
T TIGR03156 181 RRRRKRADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQ-LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLP-HELVA 257 (351)
T ss_pred HhhhcccCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccC-CccccCCEEEEEEeCCCceEEEEecCcccccCC-HHHHH
Confidence 2233 45899999999999999999999987 456664 56665 55555566 678999999999943211 11112
Q ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHH-HHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 540 KTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLP-LLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 540 eIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~-lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+...+ ..+. .+|++|+|++++..... .+.. +.+.+.. ++. ..+|+|+|+||+|+..
T Consensus 258 ~f~~tl-e~~~--~ADlil~VvD~s~~~~~-~~~~~~~~~L~~-l~~-~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 258 AFRATL-EEVR--EADLLLHVVDASDPDRE-EQIEAVEKVLEE-LGA-EDIPQLLVYNKIDLLD 315 (351)
T ss_pred HHHHHH-HHHH--hCCEEEEEEECCCCchH-HHHHHHHHHHHH-hcc-CCCCEEEEEEeecCCC
Confidence 222222 2233 48999999877643221 1221 2233332 221 2478999999999853
No 16
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.59 E-value=1e-14 Score=138.35 Aligned_cols=115 Identities=23% Similarity=0.361 Sum_probs=82.9
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK 550 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk 550 (1109)
+|+|+|+||+|||||+|+|++...+.++.. ++||+ +......+++..++|+||||+.+........ .....+.+.+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~-~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNI-PGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDG-KEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSS-TTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccccc-ccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHHH
Confidence 699999999999999999999877788886 55555 6555667899999999999998865322111 12223333443
Q ss_pred cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEec
Q 036930 551 KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTH 597 (1109)
Q Consensus 551 ~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTK 597 (1109)
.+|+++||++.+. .....+..+++.|. ..+|+++|+||
T Consensus 79 --~~d~ii~vv~~~~-~~~~~~~~~~~~l~------~~~~~i~v~NK 116 (116)
T PF01926_consen 79 --KSDLIIYVVDASN-PITEDDKNILRELK------NKKPIILVLNK 116 (116)
T ss_dssp --TESEEEEEEETTS-HSHHHHHHHHHHHH------TTSEEEEEEES
T ss_pred --HCCEEEEEEECCC-CCCHHHHHHHHHHh------cCCCEEEEEcC
Confidence 4899999988655 22233456666663 24899999998
No 17
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.59 E-value=5.5e-15 Score=169.86 Aligned_cols=122 Identities=20% Similarity=0.218 Sum_probs=98.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
..|+|||+||||||||+|.|+|+..+.|.++ ||||| .....+.|.+++|.||||+||.+... ....+.+.......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~-pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~-~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDT-PGVTRDRIYGDAEWLGREFILIDTGGLDDGDE-DELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecC-CCCccCCccceeEEcCceEEEEECCCCCcCCc-hHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999997 88888 77788899999999999999986542 224445555555555
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+ +|++|||++.. ...++.|..+.+.+... ++|+|+|+||+|...
T Consensus 82 ~e--ADvilfvVD~~-~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~ 126 (444)
T COG1160 82 EE--ADVILFVVDGR-EGITPADEEIAKILRRS-----KKPVILVVNKIDNLK 126 (444)
T ss_pred Hh--CCEEEEEEeCC-CCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCch
Confidence 54 99999996543 35667788888888743 699999999999863
No 18
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.51 E-value=2.9e-13 Score=147.69 Aligned_cols=119 Identities=21% Similarity=0.279 Sum_probs=85.3
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
.+|+|+|+||||||||+|+|+|...+.+++. ++||+ ........++.+++||||||+..... ...+.+.+.....+
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~-~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~--~l~~~~~~~~~~~l 77 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPK-AQTTRNRISGIHTTGASQIIFIDTPGFHEKKH--SLNRLMMKEARSAI 77 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCC-CCcccCcEEEEEEcCCcEEEEEECcCCCCCcc--hHHHHHHHHHHHHH
Confidence 3799999999999999999999988788885 88887 44444445677899999999976532 12333444444445
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
. .+|+++||++.+.... .+..++..+... ..|+++|+||+|+.
T Consensus 78 ~--~aDvvl~VvD~~~~~~--~~~~i~~~l~~~-----~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 78 G--GVDLILFVVDSDQWNG--DGEFVLTKLQNL-----KRPVVLTRNKLDNK 120 (270)
T ss_pred h--hCCEEEEEEECCCCCc--hHHHHHHHHHhc-----CCCEEEEEECeeCC
Confidence 4 4899999987765322 123445555432 47999999999985
No 19
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=1.1e-12 Score=145.87 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=95.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
...+|+|.|.||||||||+++|++.+. .+.+| |.||+ +...+...++.++.+||||||.|..... .|.--.+++ -
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~Y-PFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~E-rN~IE~qAi-~ 242 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPY-PFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEE-RNEIERQAI-L 242 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCC-CccccceeEeeeecCCceEEEecCCcccCCChHH-hcHHHHHHH-H
Confidence 556899999999999999999999886 78887 99998 8889999999999999999999976532 222112222 2
Q ss_pred HHhcCCCcEEEEEecCCC-CCCCC-CcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDT-HTRDH-NDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds-~t~d~-eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+++. =.++|||+++.+. +...- .+..+++.|...|. .|+++|+||+|...
T Consensus 243 AL~h-l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~ 294 (346)
T COG1084 243 ALRH-LAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIAD 294 (346)
T ss_pred HHHH-hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccc
Confidence 2222 1589999988763 33322 35678899999886 79999999999864
No 20
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.48 E-value=1.4e-12 Score=126.06 Aligned_cols=121 Identities=23% Similarity=0.292 Sum_probs=82.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
.++|+++|++|+|||||+|+|++...+.+... +.|++ .........+..+.+|||||+...... ....+.......
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK--LGERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEEEEEcCCeEEEEEECCCCCcchHH--HHHHHHHHHHHH
Confidence 57899999999999999999999887666554 44554 444445556789999999999765421 111222222232
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+ ..+|+++||++.... ....+..+++.+... ..++++|+||+|+.
T Consensus 80 ~--~~~d~i~~v~d~~~~-~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~ 124 (168)
T cd04163 80 L--KDVDLVLFVVDASEP-IGEGDEFILELLKKS-----KTPVILVLNKIDLV 124 (168)
T ss_pred H--HhCCEEEEEEECCCc-cCchHHHHHHHHHHh-----CCCEEEEEEchhcc
Confidence 3 248999999877654 223344555555443 37899999999985
No 21
>PRK00089 era GTPase Era; Reviewed
Probab=99.48 E-value=7.3e-13 Score=145.30 Aligned_cols=121 Identities=26% Similarity=0.334 Sum_probs=86.2
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
...|+|+|+||||||||+|+|+|.+.+.++.. +.||+ .........+.+++||||||+..... ...+.+.......
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~-~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~~~~~~~~~~~ 81 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALNRAMNKAAWSS 81 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCC-CCcccccEEEEEEcCCceEEEEECCCCCCchh--HHHHHHHHHHHHH
Confidence 45799999999999999999999998888774 77777 33333344568999999999977542 1233344444444
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+. .+|+++||++++. .....+..+++.+.. ...|+++|+||+|+.
T Consensus 82 ~~--~~D~il~vvd~~~-~~~~~~~~i~~~l~~-----~~~pvilVlNKiDl~ 126 (292)
T PRK00089 82 LK--DVDLVLFVVDADE-KIGPGDEFILEKLKK-----VKTPVILVLNKIDLV 126 (292)
T ss_pred Hh--cCCEEEEEEeCCC-CCChhHHHHHHHHhh-----cCCCEEEEEECCcCC
Confidence 43 4899999987765 233335555555542 247999999999986
No 22
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.47 E-value=1.2e-13 Score=158.90 Aligned_cols=264 Identities=17% Similarity=0.156 Sum_probs=151.5
Q ss_pred HHHhhhcccccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcch
Q 036930 457 EQHEIEDKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGR 535 (1109)
Q Consensus 457 ~qlla~~~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~ 535 (1109)
.+++......-...-+++|+|-||||||||+|.++..++ .|.++ +.||+ ....+..++-..+.||||||+.+...+.
T Consensus 155 rqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradv-evqpY-aFTTksL~vGH~dykYlrwQViDTPGILD~plEd 232 (620)
T KOG1490|consen 155 RQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPY-AFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEED 232 (620)
T ss_pred HHHHhcCCCCCCCcCeEEEecCCCCCcHhhccccccccc-ccCCc-ccccchhhhhhhhhheeeeeecCCccccCcchhh
Confidence 344443333334556899999999999999999997765 67787 88887 5666777778899999999999876543
Q ss_pred hhhHHHHHHHHHHHhcCCCcEEEEEecCCC-CCCC-CCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCCCCCccH
Q 036930 536 TVNKKTLASIRKSIKKFPPDVVLYVDRLDT-HTRD-HNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSY 613 (1109)
Q Consensus 536 ~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds-~t~d-~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~~~p~si 613 (1109)
....+ +..|.. +.+ -..+|||+++++. ++.+ .++..++..|+..|. .+++|+|+||+|...+++..
T Consensus 233 rN~IE-mqsITA-LAH-LraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa---NK~~IlvlNK~D~m~~edL~------ 300 (620)
T KOG1490|consen 233 RNIIE-MQIITA-LAH-LRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA---NKVTILVLNKIDAMRPEDLD------ 300 (620)
T ss_pred hhHHH-HHHHHH-HHH-hhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc---CCceEEEeecccccCccccC------
Confidence 22222 223322 211 1357899988873 3322 236788999999997 58899999999999887642
Q ss_pred HHHHhhcHHHHHHHHHHHhCCCceeccCCCCHHHHHhhHHHHHhccccceecCCCCCchhhhhHHHHHHHHHHHhhcccc
Q 036930 614 EVFVGQQSHAIQQRISQAIGDPHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKILSEANSVSK 693 (1109)
Q Consensus 614 eefV~q~~~~LQelI~qc~gr~~lfn~s~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~LllLcya~k~L~Ea~g~lk 693 (1109)
+....|.+.+..-++ ..++-.+.-+. ++.|...+ .-+..|+.-+.-.++-++....
T Consensus 301 -----~~~~~ll~~~~~~~~-v~v~~tS~~~e--------------egVm~Vrt--~ACe~LLa~RVE~Klks~~~~n-- 356 (620)
T KOG1490|consen 301 -----QKNQELLQTIIDDGN-VKVVQTSCVQE--------------EGVMDVRT--TACEALLAARVEQKLKSESRVN-- 356 (620)
T ss_pred -----HHHHHHHHHHHhccC-ceEEEecccch--------------hceeeHHH--HHHHHHHHHHHHHHhhhhhhhh--
Confidence 222223333333222 11221111110 01111111 1122333334444443322221
Q ss_pred ccCCCC----CccCCCC---CCCchhhHhhhhhccCCCCCcccccCCCCCCchhhhhhhcCCCccchhccccCCCCCc
Q 036930 694 SQGPAP----KKFFGFR---RPAPLSYFLSSLLQSHTHPKLSADQGGDGVESDVELVDFSGSDLEDEDEYDQLPPFKP 764 (1109)
Q Consensus 694 ~qe~l~----~~~~g~r---~~P~lp~LlSsLlq~r~~~k~~~~~~g~d~ds~~e~~~~~~~~~ede~eydqlP~f~~ 764 (1109)
+.+. +.+.... +.|++|.-.... .-|...+--+.+.|++ ...++-+.... .+++|+||..|-||-
T Consensus 357 --~vlnr~hvA~p~~rd~~~r~p~ip~~~~~~-~~rk~~~die~e~g~~--y~~~lk~~Y~l-~~~e~k~di~pEi~d 428 (620)
T KOG1490|consen 357 --NVLNRIHLAEPAARDEVARPPCIPDSVKTR-NRRKLARDIEAENGGA--YNVELRDKYIL-QDPSWKYDIMPEILD 428 (620)
T ss_pred --hhhhhhhhcCCCcccccccCCCcchHHHHh-hhhhhHHHHHHHhCcc--hhHHhhhcccc-CChhhhhcccHHHhc
Confidence 1111 2232222 889999888555 2333444445555555 34444444333 368999999998763
No 23
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.47 E-value=8.2e-13 Score=144.25 Aligned_cols=153 Identities=20% Similarity=0.293 Sum_probs=106.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..+++|+|+|+||+|||||||+|++.....++.. +.+++ .......+++..++||||||+++.... ..+....++
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~v-g~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~---D~~~r~~~~ 112 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKV-GVGTDITTRLRLSYDGENLVLWDTPGLGDGKDK---DAEHRQLYR 112 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeec-ccCCCchhhHHhhccccceEEecCCCcccchhh---hHHHHHHHH
Confidence 4679999999999999999999997766666654 33333 223334456788999999999996532 233444455
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCC-----CCCccHHHHHhhcH
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPS-----GLPLSYEVFVGQQS 621 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~-----~~p~sieefV~q~~ 621 (1109)
.++. +.|++|++++.+...+.. |..+++.+.-... .+++++|+|++|...|-..| .+...++.|+..+.
T Consensus 113 d~l~--~~DLvL~l~~~~draL~~-d~~f~~dVi~~~~---~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~ 186 (296)
T COG3596 113 DYLP--KLDLVLWLIKADDRALGT-DEDFLRDVIILGL---DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA 186 (296)
T ss_pred HHhh--hccEEEEeccCCCccccC-CHHHHHHHHHhcc---CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH
Confidence 5554 389999998888766544 6667766654432 38999999999998873111 11225667776666
Q ss_pred HHHHHHHHH
Q 036930 622 HAIQQRISQ 630 (1109)
Q Consensus 622 ~~LQelI~q 630 (1109)
..+.+.++.
T Consensus 187 ~~~~~~~q~ 195 (296)
T COG3596 187 EALGRLFQE 195 (296)
T ss_pred HHHHHHHhh
Confidence 667666666
No 24
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.45 E-value=1.2e-12 Score=126.68 Aligned_cols=120 Identities=24% Similarity=0.434 Sum_probs=82.4
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+++|+++|++|+|||||+|+|++.....++.. ++||. +......+.+.++.+|||||+.+.... ...........+
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~--~~~~~~~~~~~~ 77 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDI-AGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE--IEKIGIERAREA 77 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCC-CCCccceEEEEEEeCCEEEEEEECCCcCCCcch--HHHHHHHHHHHH
Confidence 57999999999999999999999886666665 66665 555666778899999999999775421 111112222233
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+. .+|++++|++++.... ..+..++.. . ...|+++|+||+|+..
T Consensus 78 ~~--~~~~~v~v~d~~~~~~-~~~~~~~~~---~----~~~~vi~v~nK~D~~~ 121 (157)
T cd04164 78 IE--EADLVLFVIDASRGLD-EEDLEILEL---P----ADKPIIVVLNKSDLLP 121 (157)
T ss_pred Hh--hCCEEEEEEECCCCCC-HHHHHHHHh---h----cCCCEEEEEEchhcCC
Confidence 33 4899999988774221 112223222 2 2489999999999865
No 25
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.42 E-value=1.9e-12 Score=149.02 Aligned_cols=124 Identities=16% Similarity=0.145 Sum_probs=83.0
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-EEEEEEeCCCCCCCCcch-hhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-VKIRIFDTPGLRSPAIGR-TVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-~~VtLIDTPGL~ds~~~~-~~~eeIl~~Ikk 547 (1109)
..|+|||.||||||||+|+|++... +++++ |+||+ .......+.+ .+++|+||||+....... .....+++
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~-p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~---- 233 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADY-PFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK---- 233 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCC-CCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----
Confidence 4699999999999999999998875 78886 88887 5666666654 679999999998754221 12223333
Q ss_pred HHhcCCCcEEEEEecCCCC---CCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTH---TRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~---t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+. ..+++|+|+++... ........+++.+.........+|.|+|+||+|+..
T Consensus 234 ~i~--radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~ 289 (390)
T PRK12298 234 HLE--RCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD 289 (390)
T ss_pred HHH--hCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC
Confidence 333 37999999876521 111112334444444321123479999999999753
No 26
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.41 E-value=3.9e-12 Score=140.21 Aligned_cols=128 Identities=24% Similarity=0.316 Sum_probs=86.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCC-------CCceeE--EEEEEEEECC--EEEEEEeCCCCCCCCcchhh
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAF-------EPATSS--VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTV 537 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i-------~pgTTr--v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~ 537 (1109)
..++|+|+|.+|+|||||+|+|++......... ...|+. ........+| .+++||||||+++.......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 458999999999999999999999876544320 134443 2334445567 56999999999886432222
Q ss_pred hHHHHHHHHHH----------------HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 538 NKKTLASIRKS----------------IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 538 ~eeIl~~Ikk~----------------Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+.+...+... +...++|++||+++.+.......|..+++.+.. ..|+|+|+||+|.+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~------~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK------RVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc------cCCEEEEEECCCcC
Confidence 33333222211 112258999999877665665556777877764 37899999999986
Q ss_pred C
Q 036930 602 P 602 (1109)
Q Consensus 602 ~ 602 (1109)
.
T Consensus 157 ~ 157 (276)
T cd01850 157 T 157 (276)
T ss_pred C
Confidence 5
No 27
>PRK15494 era GTPase Era; Provisional
Probab=99.40 E-value=5.6e-12 Score=142.62 Aligned_cols=122 Identities=22% Similarity=0.315 Sum_probs=85.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
..++|+|+|.+|||||||+|+|+|.....+++ .++||+ .......+++.++.||||||+..... .....+.+....
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~-k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~--~l~~~~~r~~~~ 127 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTP-KVQTTRSIITGIITLKDTQVILYDTPGIFEPKG--SLEKAMVRCAWS 127 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccC-CCCCccCcEEEEEEeCCeEEEEEECCCcCCCcc--cHHHHHHHHHHH
Confidence 34699999999999999999999988777777 477877 44556677899999999999975432 123334444434
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+. .+|++|||++... .+...+..+++.+... ..+.|+|+||+|+.
T Consensus 128 ~l~--~aDvil~VvD~~~-s~~~~~~~il~~l~~~-----~~p~IlViNKiDl~ 173 (339)
T PRK15494 128 SLH--SADLVLLIIDSLK-SFDDITHNILDKLRSL-----NIVPIFLLNKIDIE 173 (339)
T ss_pred Hhh--hCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEEhhcCc
Confidence 443 4899999976433 3333334455555432 35778899999974
No 28
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.40 E-value=1.1e-11 Score=121.32 Aligned_cols=123 Identities=22% Similarity=0.310 Sum_probs=81.6
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhH--HHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNK--KTLASIR 546 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~e--eIl~~Ik 546 (1109)
.++|+++|.+|+|||||+|+|++......... ++||+ ........++.++.+|||||+.+........+ .....+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~- 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDI-AGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL- 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCC-CCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHH-
Confidence 57999999999999999999999876566664 56655 54556677889999999999976532111111 111111
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++ ..+|++++|++..... ......+++.+... ..|+++|+||+|+..
T Consensus 80 ~~~--~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 80 KAI--ERADVVLLVIDATEGI-TEQDLRIAGLILEE-----GKALVIVVNKWDLVE 127 (174)
T ss_pred HHH--hhcCeEEEEEeCCCCc-chhHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence 122 2589999997765432 22233444433321 379999999999864
No 29
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.40 E-value=2.6e-12 Score=127.41 Aligned_cols=123 Identities=18% Similarity=0.168 Sum_probs=76.7
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCE-EEEEEeCCCCCCCCcch-hhhHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGV-KIRIFDTPGLRSPAIGR-TVNKKTLASIRKS 548 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~-~VtLIDTPGL~ds~~~~-~~~eeIl~~Ikk~ 548 (1109)
+|+|+|++|||||||+|+|.+... .++.. ++||. .......+.+. ++.+|||||+.+..... .......+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~---- 75 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADY-PFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRH---- 75 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCC-CccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHH----
Confidence 689999999999999999998764 55554 55554 44444556665 99999999986532111 111222222
Q ss_pred HhcCCCcEEEEEecCCCC-CCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTH-TRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~-t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+. .+|++++|++++.. ..-.....+++.+.........+|+++|+||+|+.+
T Consensus 76 ~~--~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~ 128 (170)
T cd01898 76 IE--RTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLD 128 (170)
T ss_pred HH--hCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCC
Confidence 22 37999999877653 111111233344443322223478999999999754
No 30
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.40 E-value=3.3e-12 Score=123.92 Aligned_cols=118 Identities=20% Similarity=0.262 Sum_probs=81.4
Q ss_pred EEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcC
Q 036930 474 LVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKF 552 (1109)
Q Consensus 474 aLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~ 552 (1109)
+|+|.+|||||||+|+|++.....++.. ++||+ .......+.+..+.||||||+.+... .....+.......+.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~-- 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDT-PGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEIREQAELAIE-- 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCC-CCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHHHHHHHHHHH--
Confidence 5899999999999999999876556664 55655 55566677889999999999976432 122223333333333
Q ss_pred CCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 553 PPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 553 gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++|+++||++... .....+..+++.+... ..|+++|+||+|+..
T Consensus 76 ~~d~ii~v~d~~~-~~~~~~~~~~~~~~~~-----~~piiiv~nK~D~~~ 119 (157)
T cd01894 76 EADVILFVVDGRE-GLTPADEEIAKYLRKS-----KKPVILVVNKVDNIK 119 (157)
T ss_pred hCCEEEEEEeccc-cCCccHHHHHHHHHhc-----CCCEEEEEECcccCC
Confidence 4899999977653 2223345555555543 389999999999854
No 31
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.39 E-value=1.1e-11 Score=126.31 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=81.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCC-cceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEE-KSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~-va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...++|+|+|.+|+|||||+|+|++.. ...++.. +++|. +... .++ ..+.||||||+............+...+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~-~~~t~~~~~~--~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKT-PGRTQLINFF--EVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC-CCcceEEEEE--EeC-CcEEEEeCCCCccccCChhHHHHHHHHH
Confidence 456799999999999999999999975 4555554 55555 3322 233 3799999999976543222223333333
Q ss_pred HHHHhcC-CCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKF-PPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~-gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++... ..|++++|++.+. .....+..+++.+... ..|+++|+||+|+..
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~-~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~ 143 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRH-PLKELDLEMLEWLRER-----GIPVLIVLTKADKLK 143 (179)
T ss_pred HHHHHhChhhcEEEEEecCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 3444332 4689999977654 2433445555555432 478999999999853
No 32
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.39 E-value=2.6e-12 Score=147.77 Aligned_cols=120 Identities=21% Similarity=0.280 Sum_probs=89.9
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK 550 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk 550 (1109)
+|+|+|++|||||||+|.|++...+.+... +++|+ .......++|..+.||||||+.... ......+......++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~-~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDT-PGVTRDRKYGDAEWGGREFILIDTGGIEEDD--DGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCC-CCcccCceEEEEEECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHHh
Confidence 589999999999999999999988788886 77776 6677778899999999999986432 1223344444444554
Q ss_pred cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 551 KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 551 ~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+|++|||++... .....+..+++.+.+. .+|+++|+||+|...
T Consensus 78 --~ad~vl~vvD~~~-~~~~~d~~i~~~l~~~-----~~piilVvNK~D~~~ 121 (429)
T TIGR03594 78 --EADVILFVVDGRE-GLTPEDEEIAKWLRKS-----GKPVILVANKIDGKK 121 (429)
T ss_pred --hCCEEEEEEeCCC-CCCHHHHHHHHHHHHh-----CCCEEEEEECccCCc
Confidence 3899999977654 3344455666766653 489999999999864
No 33
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=3.5e-12 Score=134.29 Aligned_cols=126 Identities=20% Similarity=0.190 Sum_probs=94.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCC-cceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEE-KSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~-va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
...-|+++|++|||||||||+|+++. .+.++. +||.|+... +..+++. +.+||.||++-........+.+...+..
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSk-tPGrTq~iN-ff~~~~~-~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSK-TPGRTQLIN-FFEVDDE-LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCC-CCCccceeE-EEEecCc-EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 45689999999999999999999976 478888 599887433 3334433 7899999999877666666777777877
Q ss_pred HHhcC-CCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCC
Q 036930 548 SIKKF-PPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPP 603 (1109)
Q Consensus 548 ~Lk~~-gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~p 603 (1109)
++... ....++++++... .....|.++++++... ..+++||+||+|.+..
T Consensus 100 YL~~R~~L~~vvlliD~r~-~~~~~D~em~~~l~~~-----~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 100 YLEKRANLKGVVLLIDARH-PPKDLDREMIEFLLEL-----GIPVIVVLTKADKLKK 150 (200)
T ss_pred HHhhchhheEEEEEEECCC-CCcHHHHHHHHHHHHc-----CCCeEEEEEccccCCh
Confidence 77652 3455556644433 3444588888888875 5899999999999863
No 34
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.36 E-value=8.5e-12 Score=130.06 Aligned_cols=120 Identities=23% Similarity=0.267 Sum_probs=76.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCC---ceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEP---ATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~p---gTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
+++|+|+|++|+|||||+|+|+|......+.... .||+....+..-....+++|||||+.+.... .+..++.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~---~~~~l~~-- 75 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFP---PDDYLEE-- 75 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCC---HHHHHHH--
Confidence 4789999999999999999999965432222111 1222111111112457899999999875421 1222222
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPD 604 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd 604 (1109)
+...+.|++|+|.+ .++...+..+++.+... .+++++|+||+|...++
T Consensus 76 --~~~~~~d~~l~v~~---~~~~~~d~~~~~~l~~~-----~~~~ilV~nK~D~~~~~ 123 (197)
T cd04104 76 --MKFSEYDFFIIISS---TRFSSNDVKLAKAIQCM-----GKKFYFVRTKVDRDLSN 123 (197)
T ss_pred --hCccCcCEEEEEeC---CCCCHHHHHHHHHHHHh-----CCCEEEEEecccchhhh
Confidence 12235799999832 34555677788877764 37889999999997654
No 35
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.33 E-value=9.8e-12 Score=137.65 Aligned_cols=128 Identities=22% Similarity=0.339 Sum_probs=81.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecC-C------CCceeEEEEE--EEEECC--EEEEEEeCCCCCCCCcchhh
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINA-F------EPATSSVKVI--AGLVHG--VKIRIFDTPGLRSPAIGRTV 537 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~-i------~pgTTrv~e~--~~~i~G--~~VtLIDTPGL~ds~~~~~~ 537 (1109)
..++|+|+|.+|+|||||||+|++........ + ...|+.+... ...-++ .+++||||||+++.......
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 35899999999999999999999987654431 1 1223333332 233344 56889999999986432223
Q ss_pred hHHHHHHHHH----HHh-----------cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 538 NKKTLASIRK----SIK-----------KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 538 ~eeIl~~Ikk----~Lk-----------~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...+...|.. ++. ..++|++||+++.+..++.+.|...|+.|.+. .|+|.|+.|+|.+.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccC
Confidence 3334333332 221 12589999999888878877788888887764 79999999999875
No 36
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.32 E-value=1.7e-11 Score=141.75 Aligned_cols=124 Identities=23% Similarity=0.300 Sum_probs=88.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhH--HHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNK--KTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~e--eIl~~ 544 (1109)
...++|+++|++|+|||||+|+|++.....++.. ++||+ ........++.++.||||||+.....-....+ ...+.
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~-~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDI-AGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCC-CCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 3579999999999999999999999988888885 77877 55566677899999999999976432111111 11122
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+ +++. .+|++|+|+++... ....+..++..+.+. .+++|+|+||+|+.
T Consensus 250 ~-~~~~--~ad~~ilViD~~~~-~~~~~~~i~~~~~~~-----~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 250 L-KAIE--RADVVLLVIDATEG-ITEQDLRIAGLALEA-----GRALVIVVNKWDLV 297 (435)
T ss_pred H-HHHH--HCCEEEEEEeCCCC-CCHHHHHHHHHHHHc-----CCcEEEEEECccCC
Confidence 2 2333 38999999877642 333455666655543 37999999999986
No 37
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.32 E-value=1.1e-11 Score=140.21 Aligned_cols=127 Identities=18% Similarity=0.159 Sum_probs=83.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEE-CCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLV-HGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i-~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
+--..|+|||.||||||||+|+|++... .++++ |+||. +......+ ++.+++|+||||+.+.... ...+-...
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~~-~va~y-pfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~---~~gLg~~f 230 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAKP-KIADY-PFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASE---GAGLGHRF 230 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCCC-ccCCC-CCceeCceEEEEEeCCCcEEEEEeCCCccCCCCc---cccHHHHH
Confidence 3335789999999999999999998764 67776 78877 66666666 5788999999999875432 11222222
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcH-HHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDL-PLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~-~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+.++ +.++++||++++.... .++. .+++.+.........+|+++|+||+|+..
T Consensus 231 lrhie--~a~vlI~ViD~s~~~s-~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~ 285 (335)
T PRK12299 231 LKHIE--RTRLLLHLVDIEAVDP-VEDYKTIRNELEKYSPELADKPRILVLNKIDLLD 285 (335)
T ss_pred HHHhh--hcCEEEEEEcCCCCCC-HHHHHHHHHHHHHhhhhcccCCeEEEEECcccCC
Confidence 22333 3799999988764321 1122 23333433211113579999999999854
No 38
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.31 E-value=1.7e-11 Score=141.60 Aligned_cols=120 Identities=20% Similarity=0.249 Sum_probs=87.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
.+|+|+|++|||||||+|.|++...+.+... +++|+ .......++|..+.||||||+..... .....+......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~-~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADT-PGVTRDRIYGEAEWLGREFILIDTGGIEPDDD--GFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCC-CCCcccceEEEEEECCcEEEEEECCCCCCcch--hHHHHHHHHHHHHH
Confidence 4799999999999999999999988778775 67666 66667788999999999999976321 12223333333344
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
. .+|++|||++... .....+..+.+++... ..|+|+|+||+|..
T Consensus 79 ~--~ad~il~vvd~~~-~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~ 122 (435)
T PRK00093 79 E--EADVILFVVDGRA-GLTPADEEIAKILRKS-----NKPVILVVNKVDGP 122 (435)
T ss_pred H--hCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCcEEEEEECccCc
Confidence 3 4899999987654 2333355566666653 48999999999953
No 39
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.30 E-value=3.4e-11 Score=138.65 Aligned_cols=124 Identities=24% Similarity=0.331 Sum_probs=87.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcch-hhh-HHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGR-TVN-KKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~-~~~-eeIl~~ 544 (1109)
...++|+++|.+|+|||||+|+|++.....++.. ++||+ .......+++..++||||||+....... ... ....+.
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~-~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDI-AGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCC-CCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 3458999999999999999999999887777775 77877 5566667789999999999997643211 111 111111
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+ +++. .+|++|+|++... .....+..+++.+.+. .+++|+|+||+|+.
T Consensus 249 ~-~~~~--~ad~~ilV~D~~~-~~~~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 249 L-KAIE--RADVVLLVLDATE-GITEQDLRIAGLILEA-----GKALVIVVNKWDLV 296 (429)
T ss_pred H-HHHH--hCCEEEEEEECCC-CccHHHHHHHHHHHHc-----CCcEEEEEECcccC
Confidence 1 2333 3899999987763 2333455566655443 37999999999986
No 40
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.29 E-value=2.9e-11 Score=142.21 Aligned_cols=124 Identities=22% Similarity=0.262 Sum_probs=86.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH-
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR- 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik- 546 (1109)
..++|+|+|++|||||||+|+|++.....++.. ++||+ .......++|.++.||||||+....... ...+....++
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~-~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~-~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDV-AGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQA-SGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCccCCcceEEEEECCEEEEEEECCCcccccccc-chHHHHHHHHH
Confidence 468999999999999999999999887667775 77776 5556677889999999999996532111 1112222221
Q ss_pred -HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 -KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 -k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++.. ....+..++..+... .+++|+|+||+|+..
T Consensus 288 ~~~i~--~ad~vilV~Da~~~-~s~~~~~~~~~~~~~-----~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 288 HAAIE--AAEVAVVLIDASEP-ISEQDQRVLSMVIEA-----GRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHh--cCCEEEEEEeCCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 2233 48999999877642 233345555555432 479999999999853
No 41
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.29 E-value=3.2e-11 Score=141.85 Aligned_cols=122 Identities=20% Similarity=0.298 Sum_probs=88.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
...+|+|+|.+|||||||+|+|++...+.+... +++|+ .......++|.++.||||||+..... .....+......
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~-~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~~~~~~~~~~~~ 113 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDV-PGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK--GLQASVAEQAEV 113 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCC-CCCCEeeEEEEEEECCcEEEEEeCCCcCCcch--hHHHHHHHHHHH
Confidence 346899999999999999999999887777774 77766 56666778999999999999863221 122233333444
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++. .+|++|+|++++.. ....+..+++.+... .+|+|+|.||+|+.
T Consensus 114 ~~~--~aD~il~VvD~~~~-~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~ 159 (472)
T PRK03003 114 AMR--TADAVLFVVDATVG-ATATDEAVARVLRRS-----GKPVILAANKVDDE 159 (472)
T ss_pred HHH--hCCEEEEEEECCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECccCC
Confidence 444 38999999887643 222355566666532 48999999999974
No 42
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.29 E-value=3.3e-11 Score=119.57 Aligned_cols=123 Identities=18% Similarity=0.271 Sum_probs=77.3
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK 550 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk 550 (1109)
+|+++|.+|||||||+|+|++... .++.. ++||. +......+.+.++.||||||+.+..... ...-....+. .+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~-~~~~~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~-~~~ 77 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP-EVAPY-PFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEE-RNTIEMQAIT-ALA 77 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-ccCCC-CCcccceeEEEEccCceEEEEEECCCcCCccccC-CchHHHHHHH-HHH
Confidence 799999999999999999998764 34443 56555 5555555678999999999986532211 1000011111 111
Q ss_pred cCCCcEEEEEecCCCCC-CC-CCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 551 KFPPDVVLYVDRLDTHT-RD-HNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 551 ~~gpDVVLLVvrlds~t-~d-~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...|++|||++++... .. .....+++.+...+. ..|+|+|+||+|+..
T Consensus 78 -~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~ 127 (168)
T cd01897 78 -HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLT 127 (168)
T ss_pred -hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCc
Confidence 1358999997766432 11 112345555554432 479999999999854
No 43
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.28 E-value=2.2e-11 Score=118.89 Aligned_cols=114 Identities=21% Similarity=0.257 Sum_probs=76.2
Q ss_pred EEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCC
Q 036930 475 VLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFP 553 (1109)
Q Consensus 475 LVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~g 553 (1109)
|+|.+|||||||+|+|++.. +.++.. ++||. +......+++.++.||||||+.+..... ....+. ..++...+
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~-~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~-~~~~~~---~~~~~~~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNW-PGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYS-EDEKVA---RDFLLGEK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCC-CCcccccceEEEeeCCeEEEEEECCCccccCCCC-hhHHHH---HHHhcCCC
Confidence 58999999999999999976 455554 66665 5556667788999999999997643211 111221 22232246
Q ss_pred CcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 554 PDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 554 pDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+|++++|++..... .....+..+... .+|+++|+||+|+..
T Consensus 75 ~d~vi~v~d~~~~~---~~~~~~~~~~~~-----~~~~iiv~NK~Dl~~ 115 (158)
T cd01879 75 PDLIVNVVDATNLE---RNLYLTLQLLEL-----GLPVVVALNMIDEAE 115 (158)
T ss_pred CcEEEEEeeCCcch---hHHHHHHHHHHc-----CCCEEEEEehhhhcc
Confidence 89999997765422 123334334332 479999999999854
No 44
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.28 E-value=5.3e-11 Score=140.61 Aligned_cols=128 Identities=18% Similarity=0.185 Sum_probs=85.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
|+.-..|+|||.||||||||||+|++... +++++ |+||. .......+.+.+|+|+||||+.+.... .+.+-...
T Consensus 156 Lk~~adV~LVG~PNAGKSTLln~Ls~akp-kIady-pfTTl~P~lGvv~~~~~~f~laDtPGliegas~---g~gLg~~f 230 (500)
T PRK12296 156 LKSVADVGLVGFPSAGKSSLISALSAAKP-KIADY-PFTTLVPNLGVVQAGDTRFTVADVPGLIPGASE---GKGLGLDF 230 (500)
T ss_pred ecccceEEEEEcCCCCHHHHHHHHhcCCc-ccccc-CcccccceEEEEEECCeEEEEEECCCCccccch---hhHHHHHH
Confidence 44456899999999999999999998765 56776 88887 666777788899999999999864321 11221222
Q ss_pred HHHHhcCCCcEEEEEecCCCCC--CC-CCcHHH-HHHHHhhhC---------CCCCCeEEEEEeccCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHT--RD-HNDLPL-LKSLTSSLG---------SSVWQNAILCLTHAASE 601 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t--~d-~eD~~l-Lk~I~e~FG---------~~v~k~vIVVLTKaD~l 601 (1109)
.+.+. ..|++|+|++++... .+ ..+... .+.|..... ....+|+|||+||+|+.
T Consensus 231 Lrhie--radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 231 LRHIE--RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred HHHHH--hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 22333 379999998775321 11 112222 233433321 12358999999999974
No 45
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.27 E-value=1.6e-10 Score=117.79 Aligned_cols=126 Identities=20% Similarity=0.230 Sum_probs=77.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCC-cceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEE-KSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~-va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
+...+|+|+|.+|||||||+|+|++.. ...++.. +++|+-.... .+ +.++.||||||+..........+.....+.
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~~-~~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKT-PGRTQLINFF-EV-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCC-CCceeEEEEE-ec-CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 355799999999999999999999875 4555554 5565522222 22 578999999998654322222223333333
Q ss_pred HHHhcC-CCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKF-PPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~-gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++... ..+++++|++.+. .....+..+++.+.. + ..++++|+||+|+..
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~-~~~~~~~~i~~~l~~-~----~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRH-PLKELDLQMIEWLKE-Y----GIPVLIVLTKADKLK 149 (196)
T ss_pred HHHHhCccceEEEEEEecCC-CCCHHHHHHHHHHHH-c----CCcEEEEEECcccCC
Confidence 334322 3577888765443 222223344555432 2 468899999999864
No 46
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.27 E-value=5.9e-11 Score=138.16 Aligned_cols=123 Identities=18% Similarity=0.154 Sum_probs=81.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEEC-CEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVH-GVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~-G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..|+|||.||||||||||+|++... +++++ |+||. +......+. +..++|+||||+...... ...+.....+.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~-kIa~y-pfTTl~PnlG~v~~~~~~~~~laD~PGliega~~---~~gLg~~fLrh 233 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKP-KIANY-HFTTLVPNLGVVETDDGRSFVMADIPGLIEGASE---GVGLGHQFLRH 233 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCC-ccccC-CcceeceEEEEEEEeCCceEEEEECCCCcccccc---cchHHHHHHHH
Confidence 4799999999999999999998774 56776 78877 555556666 789999999999764321 11121112222
Q ss_pred HhcCCCcEEEEEecCCCC-CCCC-Cc-HHHHHHHHhhhCCCCCCeEEEEEeccCC
Q 036930 549 IKKFPPDVVLYVDRLDTH-TRDH-ND-LPLLKSLTSSLGSSVWQNAILCLTHAAS 600 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~-t~d~-eD-~~lLk~I~e~FG~~v~k~vIVVLTKaD~ 600 (1109)
+. +.+++++|++++.. ..+. .+ ..+.+.|.........+|+|||+||+|+
T Consensus 234 ie--r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL 286 (424)
T PRK12297 234 IE--RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL 286 (424)
T ss_pred Hh--hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC
Confidence 33 37999999887643 1111 12 2334444443222235899999999996
No 47
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.27 E-value=6.7e-11 Score=126.93 Aligned_cols=129 Identities=26% Similarity=0.366 Sum_probs=94.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecC------CCCceeEEE--EEEEEECC--EEEEEEeCCCCCCCCcchhh
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINA------FEPATSSVK--VIAGLVHG--VKIRIFDTPGLRSPAIGRTV 537 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~------i~pgTTrv~--e~~~~i~G--~~VtLIDTPGL~ds~~~~~~ 537 (1109)
++.++|++||.+|.||||++|+|+.......+. -.|.||.+. ....+-+| .+++|||||||+|.-....+
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 467999999999999999999999765543211 125566633 33344455 45789999999997544444
Q ss_pred hHHHHHHHHH----H------------HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 538 NKKTLASIRK----S------------IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 538 ~eeIl~~Ikk----~------------Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+-|++.|+. + +...++|++||+++.+...+.+.|..+|+.+.+. .++|.|+.|+|.+
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~v------vNvvPVIakaDtl 197 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEV------VNVVPVIAKADTL 197 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhh------heeeeeEeecccc
Confidence 5555554442 1 2223689999999999888888899999999886 7899999999976
Q ss_pred C
Q 036930 602 P 602 (1109)
Q Consensus 602 ~ 602 (1109)
.
T Consensus 198 T 198 (336)
T KOG1547|consen 198 T 198 (336)
T ss_pred c
Confidence 4
No 48
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.26 E-value=8.9e-12 Score=123.69 Aligned_cols=120 Identities=23% Similarity=0.272 Sum_probs=74.6
Q ss_pred EEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEEC-CEEEEEEeCCCCCCCCcc-hhhhHHHHHHHHHHHhc
Q 036930 475 VLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVH-GVKIRIFDTPGLRSPAIG-RTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 475 LVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~-G~~VtLIDTPGL~ds~~~-~~~~eeIl~~Ikk~Lk~ 551 (1109)
|+|++|||||||+|+|++... .++.+ ++||. +......++ +.++.||||||+.+.... ......+.. .+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~-~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~- 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANY-PFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR- 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCC-CceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHH----HHh-
Confidence 589999999999999999875 55565 55654 555556677 999999999998653211 111112222 222
Q ss_pred CCCcEEEEEecCCCCC-----CCCCcH-HHHHHHHhhhCC-----CCCCeEEEEEeccCCCC
Q 036930 552 FPPDVVLYVDRLDTHT-----RDHNDL-PLLKSLTSSLGS-----SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 552 ~gpDVVLLVvrlds~t-----~d~eD~-~lLk~I~e~FG~-----~v~k~vIVVLTKaD~l~ 602 (1109)
++|++++|++..... ....+. .+...+...... ...+|+++|+||+|+..
T Consensus 74 -~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 134 (176)
T cd01881 74 -RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD 134 (176)
T ss_pred -ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc
Confidence 389999997765431 111111 122333322111 12589999999999854
No 49
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.26 E-value=8.6e-11 Score=121.63 Aligned_cols=125 Identities=15% Similarity=0.097 Sum_probs=74.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
-++|+|+|++|||||||+|.|++.... +... +.+|. .......+.+ .++.||||||+.+.... .........+ .
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~-~~~~-~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~-~ 116 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVY-AEDQ-LFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPH-QLVEAFRSTL-E 116 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhc-cCCc-cceeccceeEEEEecCCceEEEeCCCccccCCCH-HHHHHHHHHH-H
Confidence 479999999999999999999997642 3332 33333 3333444444 48999999999653221 1111111111 1
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+ ..+|++++|++++..........+.+.+... +. ...++++|+||+|+.+
T Consensus 117 ~~--~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~-~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 117 EV--AEADLLLHVVDASDPDYEEQIETVEKVLKEL-GA-EDIPMILVLNKIDLLD 167 (204)
T ss_pred HH--hcCCeEEEEEECCCCChhhHHHHHHHHHHHc-Cc-CCCCEEEEEEccccCC
Confidence 12 2489999998776432211111223333332 21 1378999999999854
No 50
>PRK11058 GTPase HflX; Provisional
Probab=99.26 E-value=1.3e-10 Score=135.47 Aligned_cols=123 Identities=13% Similarity=0.044 Sum_probs=77.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
.+|+|+|.||||||||+|+|++.+.+ +.+. ++||. .......+.+ .++.++||||+.... .....+.+...+ ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~-~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~l-p~~lve~f~~tl-~~ 273 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQ-LFATLDPTLRRIDVADVGETVLADTVGFIRHL-PHDLVAAFKATL-QE 273 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccC-CCCCcCCceEEEEeCCCCeEEEEecCcccccC-CHHHHHHHHHHH-HH
Confidence 48999999999999999999998865 5554 56655 4444555555 489999999994421 111122222222 22
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHH-HHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLL-KSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lL-k~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+ ..+|++|+|++++..... .+...+ +.+... +. ...|+|+|+||+|+..
T Consensus 274 ~--~~ADlIL~VvDaS~~~~~-e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 274 T--RQATLLLHVVDAADVRVQ-ENIEAVNTVLEEI-DA-HEIPTLLVMNKIDMLD 323 (426)
T ss_pred h--hcCCEEEEEEeCCCccHH-HHHHHHHHHHHHh-cc-CCCCEEEEEEcccCCC
Confidence 2 258999999877653221 122222 223332 22 2478999999999853
No 51
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.26 E-value=6.9e-11 Score=133.51 Aligned_cols=127 Identities=19% Similarity=0.196 Sum_probs=82.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-EEEEEEeCCCCCCCCcch-hhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-VKIRIFDTPGLRSPAIGR-TVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-~~VtLIDTPGL~ds~~~~-~~~eeIl~~ 544 (1109)
+--..|+|||.||||||||+|+|++... .++.+ |.||. .......+.+ .+++|+||||+.+..... ......++.
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~~-~va~y-~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrh 232 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAKP-KIADY-PFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKH 232 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCCc-cccCC-CCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHH
Confidence 3345799999999999999999998754 57776 67765 5555666666 899999999997644211 122223333
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCC-CC-CcH-HHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTR-DH-NDL-PLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~-d~-eD~-~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+. +.+++|||++++.... +. ++. .+.+.+.........+|++||+||+|+..
T Consensus 233 ----ie--rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~ 287 (329)
T TIGR02729 233 ----IE--RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLD 287 (329)
T ss_pred ----HH--hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCC
Confidence 33 3799999988765311 11 112 23333333211123589999999999853
No 52
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.25 E-value=3.4e-10 Score=110.94 Aligned_cols=114 Identities=20% Similarity=0.219 Sum_probs=70.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecC-CCCceeE-EEEEEEEEC-CEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINA-FEPATSS-VKVIAGLVH-GVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~-i~pgTTr-v~e~~~~i~-G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
+.|+++|.+|||||||+|+|++........ ..+++|. .......+. +.++.+|||||... ....+..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~----------~~~~~~~ 70 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK----------FIKNMLA 70 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH----------HHHHHHh
Confidence 368999999999999999999864322221 1244443 333344555 78999999999732 1111222
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+. ++|++++|++++... .......+..+. ..+ .+|+++|+||+|+.
T Consensus 71 ~~~--~ad~ii~V~d~~~~~-~~~~~~~~~~~~-~~~---~~~~ilv~NK~Dl~ 117 (164)
T cd04171 71 GAG--GIDLVLLVVAADEGI-MPQTREHLEILE-LLG---IKRGLVVLTKADLV 117 (164)
T ss_pred hhh--cCCEEEEEEECCCCc-cHhHHHHHHHHH-HhC---CCcEEEEEECcccc
Confidence 222 489999998875421 112223333322 222 25899999999975
No 53
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.23 E-value=8.5e-11 Score=144.63 Aligned_cols=121 Identities=16% Similarity=0.283 Sum_probs=89.2
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
-.+|+|+|.+|||||||+|+|++...+.+... +++|+ .......+++.++.||||||+..... .....+......+
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~-pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~~~ 351 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDT-PGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE--GIDSAIASQAQIA 351 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCC-CCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc--cHHHHHHHHHHHH
Confidence 35799999999999999999999887788885 77776 66667778999999999999874321 1233344444444
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+. .+|++|||++... .....+..+++.+... .+|+|+|+||+|..
T Consensus 352 ~~--~aD~iL~VvDa~~-~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~ 396 (712)
T PRK09518 352 VS--LADAVVFVVDGQV-GLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQ 396 (712)
T ss_pred HH--hCCEEEEEEECCC-CCCHHHHHHHHHHHhc-----CCCEEEEEECcccc
Confidence 44 4899999977653 3334455566666542 58999999999974
No 54
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.21 E-value=6.4e-11 Score=130.81 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=92.5
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcch--hhhHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGR--TVNKKTLA 543 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~--~~~eeIl~ 543 (1109)
-...++|+|||.||||||||.|.+.|++++.++. ...||+ -....+.-+..+++|+||||+....... ......++
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~-K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSR-KVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccc-cccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 3456899999999999999999999999999988 477777 4455666678999999999998765321 11112222
Q ss_pred HHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 544 SIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 544 ~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++.+. .+|+|++|+++.. +...-...+|..+.... .-|.|+|+||.|.+.
T Consensus 148 ~~~~a~q--~AD~vvVv~Das~-tr~~l~p~vl~~l~~ys----~ips~lvmnkid~~k 199 (379)
T KOG1423|consen 148 NPRDAAQ--NADCVVVVVDASA-TRTPLHPRVLHMLEEYS----KIPSILVMNKIDKLK 199 (379)
T ss_pred CHHHHHh--hCCEEEEEEeccC-CcCccChHHHHHHHHHh----cCCceeeccchhcch
Confidence 3334444 3899999988775 22333456777776653 368899999999865
No 55
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.21 E-value=1.2e-10 Score=143.20 Aligned_cols=124 Identities=17% Similarity=0.238 Sum_probs=86.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH-
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR- 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik- 546 (1109)
...+|+|+|++|||||||+|+|++.....++.+ ++||+ .......++|.++.||||||+....... ...+....++
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~-~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~-~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDL-AGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKL-TGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCC-CCCCcCcceeEEEECCCEEEEEECCCcccCcccc-hhHHHHHHHHH
Confidence 347999999999999999999999987677775 77776 5566677899999999999997543111 1112222221
Q ss_pred -HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 -KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 -k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++.+.. ....+..++..+... .+++|+|+||+|+..
T Consensus 527 ~~~i~--~advvilViDat~~-~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~~ 575 (712)
T PRK09518 527 QAAIE--RSELALFLFDASQP-ISEQDLKVMSMAVDA-----GRALVLVFNKWDLMD 575 (712)
T ss_pred HHHhh--cCCEEEEEEECCCC-CCHHHHHHHHHHHHc-----CCCEEEEEEchhcCC
Confidence 2233 48999999877642 333345555555432 479999999999853
No 56
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.20 E-value=2.2e-10 Score=129.40 Aligned_cols=131 Identities=23% Similarity=0.366 Sum_probs=93.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceec---CCCC----ceeEEEEEEEEE--CC--EEEEEEeCCCCCCCCcchh
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTIN---AFEP----ATSSVKVIAGLV--HG--VKIRIFDTPGLRSPAIGRT 536 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs---~i~p----gTTrv~e~~~~i--~G--~~VtLIDTPGL~ds~~~~~ 536 (1109)
+..++|+++|++|.||||+||+|++....... ...+ .|..+......+ +| .+++||||||+++.-....
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 56789999999999999999999997432211 1212 122233333333 44 5688999999999754444
Q ss_pred hhHHHHHHHHHH----------------HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCC
Q 036930 537 VNKKTLASIRKS----------------IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAAS 600 (1109)
Q Consensus 537 ~~eeIl~~Ikk~----------------Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~ 600 (1109)
..+-++..|... +...++|++||+++.+..++.+-|..+|+.|.+. .++|.|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeecccc
Confidence 455555555432 1223689999999999988888899999988875 799999999999
Q ss_pred CCCC
Q 036930 601 EPPD 604 (1109)
Q Consensus 601 l~pd 604 (1109)
+..+
T Consensus 175 lT~~ 178 (373)
T COG5019 175 LTDD 178 (373)
T ss_pred CCHH
Confidence 8643
No 57
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.19 E-value=1.7e-10 Score=109.63 Aligned_cols=117 Identities=21% Similarity=0.313 Sum_probs=74.3
Q ss_pred EEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC-CEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCC
Q 036930 475 VLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH-GVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFP 553 (1109)
Q Consensus 475 LVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~-G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~g 553 (1109)
|+|++|+|||||+|+|++.....++...+.|........... +..+.+|||||+.+..... .........++. .
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~---~~~~~~~~~~~~--~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLG---REREELARRVLE--R 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccch---hhHHHHHHHHHH--h
Confidence 589999999999999999877656665333433545554544 7899999999998754311 111122223333 3
Q ss_pred CcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 554 PDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 554 pDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+|+++||++........ ...++.... ....|+++|+||+|...
T Consensus 76 ~d~il~v~~~~~~~~~~-~~~~~~~~~-----~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 76 ADLILFVVDADLRADEE-EEKLLELLR-----ERGKPVLLVLNKIDLLP 118 (163)
T ss_pred CCEEEEEEeCCCCCCHH-HHHHHHHHH-----hcCCeEEEEEEccccCC
Confidence 89999997766533211 111122221 12478999999999865
No 58
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.18 E-value=1.1e-09 Score=106.56 Aligned_cols=121 Identities=21% Similarity=0.220 Sum_probs=73.8
Q ss_pred EEEEecCCCChhHHHHHHhCC-CcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc
Q 036930 473 ILVLGKTGVGKSATINSIFGE-EKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~-~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~ 551 (1109)
|+|+|++|+|||||+|+|++. ....++.. +++|... ....+.+ .+++|||||+..........+.....+..++..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~-~~~t~~~-~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKT-PGKTQLI-NFFNVND-KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCC-CCcceeE-EEEEccC-eEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 799999999999999999953 33334332 4444422 1223333 899999999987643222223333333444432
Q ss_pred C-CCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 552 F-PPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 552 ~-gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
. ..+++++|++.+... ...+..+++++... ..|+++|+||+|...
T Consensus 79 ~~~~~~~~~v~d~~~~~-~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~ 124 (170)
T cd01876 79 RENLKGVVLLIDSRHGP-TEIDLEMLDWLEEL-----GIPFLVVLTKADKLK 124 (170)
T ss_pred ChhhhEEEEEEEcCcCC-CHhHHHHHHHHHHc-----CCCEEEEEEchhcCC
Confidence 2 357788886665432 22244555655543 378999999999864
No 59
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.18 E-value=2.1e-10 Score=142.06 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=84.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCc--ch-hhhHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAI--GR-TVNKKTLASI 545 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~--~~-~~~eeIl~~I 545 (1109)
.++|+++|.||||||||+|+|+|... .++.+ ++||. ..+....+++.++.+|||||+.+-.. .. ...+.+.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~-pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~--- 77 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNW-AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA--- 77 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCC-CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHH---
Confidence 46899999999999999999999875 78887 77776 55666677889999999999976431 11 1122222
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+.++....+|++++|++.+. ... ...+...+.+. ..|+++|+||+|...
T Consensus 78 ~~~l~~~~aD~vI~VvDat~--ler-~l~l~~ql~e~-----giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 78 CHYILSGDADLLINVVDASN--LER-NLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (772)
T ss_pred HHHHhccCCCEEEEEecCCc--chh-hHHHHHHHHHc-----CCCEEEEEEchhhhh
Confidence 22333346899999976654 221 33444445443 489999999999854
No 60
>PRK04213 GTP-binding protein; Provisional
Probab=99.16 E-value=3.5e-10 Score=116.71 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=73.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCc-chhhhHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAI-GRTVNKKTLASIRK 547 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~-~~~~~eeIl~~Ikk 547 (1109)
..++|+++|.+|||||||+|+|++.. +.++. .+++|+.. ....+. ++.+|||||++.... .....+.+...+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~-~~~~t~~~-~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGK-RPGVTRKP-NHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCC-CCceeeCc-eEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 45799999999999999999999876 45554 36776621 122333 689999999855321 11112223222222
Q ss_pred HHhc--CCCcEEEEEecCCCCC-C---------CCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 548 SIKK--FPPDVVLYVDRLDTHT-R---------DHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~--~gpDVVLLVvrlds~t-~---------d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++.. ..++++++|++.+... . ...+..+++.+... ..|+++|+||+|+.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~p~iiv~NK~Dl~ 143 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-----GIPPIVAVNKMDKI 143 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-----CCCeEEEEECcccc
Confidence 3321 2468899997664321 0 00122334443321 47899999999974
No 61
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.16 E-value=6.4e-10 Score=106.90 Aligned_cols=115 Identities=18% Similarity=0.161 Sum_probs=70.2
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEE--CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLV--HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i--~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
+||+++|++|+|||||+|.|++........ +.+. ........+ ....+.+|||||... .......
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~ 68 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYK--STIGVDFKSKTIEIDGKTVKLQIWDTAGQER----------FRSITPS 68 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccC--CceeeeeEEEEEEECCEEEEEEEEecCChHH----------HHHHHHH
Confidence 589999999999999999999876543311 1111 122233333 347889999999732 1112233
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+++ .+|++++|++++....-.....++..+..... ...|+++|+||+|..
T Consensus 69 ~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~ 118 (159)
T cd00154 69 YYR--GAHGAILVYDITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLE 118 (159)
T ss_pred Hhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEccccc
Confidence 343 38999999877652211111223334433321 247999999999986
No 62
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.2e-10 Score=126.44 Aligned_cols=131 Identities=22% Similarity=0.343 Sum_probs=90.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCccee-----cCCC-CceeEEEEEEEEE--CC--EEEEEEeCCCCCCCCcchhh
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTI-----NAFE-PATSSVKVIAGLV--HG--VKIRIFDTPGLRSPAIGRTV 537 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~V-----s~i~-pgTTrv~e~~~~i--~G--~~VtLIDTPGL~ds~~~~~~ 537 (1109)
+..++++++|.+|.|||||||+|++.....- .... +-|..+......+ +| .+++||||||+++.-.....
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 4568999999999999999999998743211 0111 1233333333333 45 56789999999986533333
Q ss_pred hHHHHHHHH----HHHhc-----------CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 538 NKKTLASIR----KSIKK-----------FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 538 ~eeIl~~Ik----k~Lk~-----------~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+-+...+. .++.. .++|++||+++....++.+-|..+++.+... .++|.|+.|+|.+.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~------vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKK------VNLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhcc------ccccceeeccccCC
Confidence 333333332 33221 2689999999988888888898888888765 78999999999986
Q ss_pred CC
Q 036930 603 PD 604 (1109)
Q Consensus 603 pd 604 (1109)
++
T Consensus 173 ~~ 174 (366)
T KOG2655|consen 173 KD 174 (366)
T ss_pred HH
Confidence 43
No 63
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.13 E-value=5.4e-10 Score=109.92 Aligned_cols=115 Identities=15% Similarity=0.198 Sum_probs=72.1
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.||+++|++|||||||+|+|++..... .. .+.++. .......+++ ..+.+|||||... ....+..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~~~ 68 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDN-QY-QATIGIDFLSKTMYLEDKTVRLQLWDTAGQER----------FRSLIPS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCc-cC-CCceeeeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHH
Confidence 489999999999999999999876533 22 233332 3344445555 4688999999522 1112223
Q ss_pred HHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+++ .+|++++|.+++... +.. ....+..+....+. ..|+++|.||+|...
T Consensus 69 ~~~--~~~~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~--~~~iilv~nK~D~~~ 119 (161)
T cd01861 69 YIR--DSSVAVVVYDITNRQSFDN-TDKWIDDVRDERGN--DVIIVLVGNKTDLSD 119 (161)
T ss_pred Hhc--cCCEEEEEEECcCHHHHHH-HHHHHHHHHHhCCC--CCEEEEEEEChhccc
Confidence 333 489999998776422 211 12333444333221 479999999999853
No 64
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.12 E-value=4.2e-10 Score=135.02 Aligned_cols=122 Identities=24% Similarity=0.307 Sum_probs=89.0
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..+|+++|.|||||||++|+|+|.+. .|+++ ||+|- ..+.+....|..+.+||+||..+-..- ...+.+ .+++
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q-~VgNw-pGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~-S~DE~V---ar~~ 76 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ-KVGNW-PGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAY-SEDEKV---ARDF 76 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc-eecCC-CCeeEEEEEEEEEecCceEEEEeCCCcCCCCCC-CchHHH---HHHH
Confidence 35799999999999999999999886 89998 77665 778888889999999999999874321 233343 3455
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDG 605 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~ 605 (1109)
+.+.+||+++-|++.+ ....+ ..+.-++.+. ..|+|+++|++|.....+
T Consensus 77 ll~~~~D~ivnVvDAt--nLeRn-LyltlQLlE~-----g~p~ilaLNm~D~A~~~G 125 (653)
T COG0370 77 LLEGKPDLIVNVVDAT--NLERN-LYLTLQLLEL-----GIPMILALNMIDEAKKRG 125 (653)
T ss_pred HhcCCCCEEEEEcccc--hHHHH-HHHHHHHHHc-----CCCeEEEeccHhhHHhcC
Confidence 6666899999995444 33222 2222233333 478999999999876543
No 65
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.08 E-value=3.4e-09 Score=104.17 Aligned_cols=117 Identities=21% Similarity=0.181 Sum_probs=70.1
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+||+++|++|+|||||+|+|++.... .......+.+.......+++ ..+.+|||||... .......+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~ 69 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQER----------FRSITSSY 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence 58999999999999999999987642 11111122223334455666 5788999999522 11122233
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ .+|++++|+++........-..++..+..... ...|+++|.||+|...
T Consensus 70 ~~--~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~ 119 (164)
T smart00175 70 YR--GAVGALLVYDITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLED 119 (164)
T ss_pred hC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhccc
Confidence 33 48999999777542211001122333332221 2479999999999754
No 66
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.08 E-value=1.3e-09 Score=117.24 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=61.1
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK 550 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk 550 (1109)
+|+|+|.+|+|||||+|+|+|... .++.+ ++||. +......+++.++.+|||||+.+..... ..+...+..+++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~-~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~---~~~~~~~l~~~~ 76 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAY-EFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADG---KGRGRQVIAVAR 76 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCC-CCccccceEEEEEECCeEEEEEECCCcccccccc---hhHHHHHHHhhc
Confidence 799999999999999999999764 45665 66665 6666677899999999999986643111 112222222333
Q ss_pred cCCCcEEEEEecCC
Q 036930 551 KFPPDVVLYVDRLD 564 (1109)
Q Consensus 551 ~~gpDVVLLVvrld 564 (1109)
.+|++++|++.+
T Consensus 77 --~ad~il~V~D~t 88 (233)
T cd01896 77 --TADLILMVLDAT 88 (233)
T ss_pred --cCCEEEEEecCC
Confidence 489999997654
No 67
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.08 E-value=8.6e-10 Score=108.27 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=71.0
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
++|+++|++|||||||+|+|++..... .+.+... ........+.+ ..+.+|||||.... ..+ ...
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~---~~~ 68 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVS--KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-------LEV---RNE 68 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CCCCccceeEEEEEEEECCeEEEEEEEECCccHHH-------HHH---HHH
Confidence 589999999999999999999876321 2112111 11122233333 67889999997321 111 122
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC---CCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS---SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~---~v~k~vIVVLTKaD~l~ 602 (1109)
+++ .+|++|||.+++....-.....++..+...... ....|+++|.||+|+..
T Consensus 69 ~~~--~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 69 FYK--DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred Hhc--cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 232 489999998776432111122344555444332 13478999999999853
No 68
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.07 E-value=1.4e-09 Score=107.48 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=69.7
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEE---CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLV---HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i---~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.|+|+|.+|+|||||+|+|++..... .. .+++|. ........ .+..+.+|||||..... .+ ...
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~-------~~---~~~ 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAA-GE-AGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT-------NM---RAR 69 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccccc-cc-CCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH-------HH---HHH
Confidence 58999999999999999999765422 22 234443 33333444 37899999999974311 11 111
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++. .+|++++|++++... .......+..+.. ...|+++|+||+|+.
T Consensus 70 ~~~--~~d~il~v~d~~~~~-~~~~~~~~~~~~~-----~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 70 GAS--LTDIAILVVAADDGV-MPQTIEAIKLAKA-----ANVPFIVALNKIDKP 115 (168)
T ss_pred HHh--hcCEEEEEEECCCCc-cHHHHHHHHHHHH-----cCCCEEEEEEceecc
Confidence 222 489999998776432 1223334444432 247899999999975
No 69
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.07 E-value=4e-09 Score=104.17 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=69.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+||+|+|++|||||||+|.|++......... ..+.........+++ ..+.||||||.... ......+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----------~~~~~~~ 69 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQH-TIGVEFGSKIIRVGGKRVKLQIWDTAGQERF----------RSVTRSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ceeeeEEEEEEEECCEEEEEEEEECcchHHH----------HHhHHHH
Confidence 5899999999999999999997653221111 112222223334445 56789999996321 1112223
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ .+|++++|++++.......-..++..+..... ...|+++|.||+|...
T Consensus 70 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 119 (161)
T cd04113 70 YR--GAAGALLVYDITNRTSFEALPTWLSDARALAS--PNIVVILVGNKSDLAD 119 (161)
T ss_pred hc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcch
Confidence 33 48999999887653211111233333333322 2468999999999864
No 70
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.07 E-value=4.4e-09 Score=104.70 Aligned_cols=118 Identities=13% Similarity=0.134 Sum_probs=70.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+++|++|+|||||+|++.+......... ..++........+++ ..+.||||||... .......
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~ 71 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGN-TIGVDFTMKTLEIEGKRVKLQIWDTAGQER----------FRTITQS 71 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCC-ccceEEEEEEEEECCEEEEEEEEECCChHH----------HHHHHHH
Confidence 47999999999999999999986542211111 111222233345566 5788999999521 1111222
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|++++....-.....++..+..... ...|+++|.||+|+..
T Consensus 72 ~~~--~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~Dl~~ 122 (165)
T cd01864 72 YYR--SANGAIIAYDITRRSSFESVPHWIEEVEKYGA--SNVVLLLIGNKCDLEE 122 (165)
T ss_pred Hhc--cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 333 48999999887653211112334454444321 2468999999999854
No 71
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.06 E-value=1e-09 Score=110.20 Aligned_cols=118 Identities=17% Similarity=0.195 Sum_probs=70.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
-++|+|+|.+|||||||+|++++...........+ .........+++ ..+.||||||... .......
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 72 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-VEFGARMITIDGKQIKLQIWDTAGQES----------FRSITRS 72 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc-eeEEEEEEEECCEEEEEEEEECCCcHH----------HHHHHHH
Confidence 47999999999999999999998764332222112 222223334444 5788999999521 1111223
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+++ .+|++|+|.+++....-..-..++..+..... ...|+++|.||+|+..
T Consensus 73 ~~~--~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 73 YYR--GAAGALLVYDITRRETFNHLTSWLEDARQHSN--SNMTIMLIGNKCDLES 123 (168)
T ss_pred Hhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 333 48999999887642211111223333333221 2478999999999864
No 72
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.05 E-value=4.1e-09 Score=108.73 Aligned_cols=113 Identities=20% Similarity=0.231 Sum_probs=67.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCC------cceecCCCCceeE-EEEEEEEEC--------------CEEEEEEeCCCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEE------KSTINAFEPATSS-VKVIAGLVH--------------GVKIRIFDTPGLR 529 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~------va~Vs~i~pgTTr-v~e~~~~i~--------------G~~VtLIDTPGL~ 529 (1109)
++|+++|.+|+|||||+|+|++.. ...... .+++|. +......+. +..+.+|||||..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~-~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQ-ERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHH-HcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 589999999999999999999742 111111 234443 332333333 6889999999973
Q ss_pred CCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 530 SPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 530 ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
. +.+.+..... .+|++++|++.... ....+...+.. ...+ ..++++|+||+|+..
T Consensus 80 ~----------~~~~~~~~~~--~~d~vi~VvD~~~~-~~~~~~~~~~~-~~~~----~~~~iiv~NK~Dl~~ 134 (192)
T cd01889 80 S----------LIRTIIGGAQ--IIDLMLLVVDATKG-IQTQTAECLVI-GEIL----CKKLIVVLNKIDLIP 134 (192)
T ss_pred H----------HHHHHHHHHh--hCCEEEEEEECCCC-ccHHHHHHHHH-HHHc----CCCEEEEEECcccCC
Confidence 2 1122222222 37999999776532 11112222332 2222 368999999999853
No 73
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.04 E-value=4.9e-10 Score=112.06 Aligned_cols=112 Identities=24% Similarity=0.308 Sum_probs=68.1
Q ss_pred EEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEE--------------------------------------
Q 036930 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGL-------------------------------------- 514 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~-------------------------------------- 514 (1109)
|+++|..++|||||||+|+|.....++.. ++|..+......
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~-~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVG-PCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSS-STTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccc-ccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 78999999999999999999987665543 444332211000
Q ss_pred ------------------ECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHH
Q 036930 515 ------------------VHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLL 576 (1109)
Q Consensus 515 ------------------i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lL 576 (1109)
.....++||||||+.+.... .. ..+.+++. ..|++|||++..... ...+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~--~~----~~~~~~~~--~~d~vi~V~~~~~~~-~~~~~~~l 150 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSE--HT----EITEEYLP--KADVVIFVVDANQDL-TESDMEFL 150 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTT--TS----HHHHHHHS--TTEEEEEEEETTSTG-GGHHHHHH
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhh--hH----HHHHHhhc--cCCEEEEEeccCccc-chHHHHHH
Confidence 01144899999999774321 11 23444553 489999998776532 22244444
Q ss_pred HHHHhhhCCCCCCeEEEEEecc
Q 036930 577 KSLTSSLGSSVWQNAILCLTHA 598 (1109)
Q Consensus 577 k~I~e~FG~~v~k~vIVVLTKa 598 (1109)
....... ...+|+|+||+
T Consensus 151 ~~~~~~~----~~~~i~V~nk~ 168 (168)
T PF00350_consen 151 KQMLDPD----KSRTIFVLNKA 168 (168)
T ss_dssp HHHHTTT----CSSEEEEEE-G
T ss_pred HHHhcCC----CCeEEEEEcCC
Confidence 4443332 35599999985
No 74
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.04 E-value=6.4e-09 Score=98.87 Aligned_cols=116 Identities=18% Similarity=0.154 Sum_probs=68.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
+||+++|.+|+|||||+|.|++.. +..... +.++. ........++ ..+.+|||||..+.. ......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~-- 70 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYK-PGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYR-------AIRRLY-- 70 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCC-CCceeeeeEEEEEECCEEEEEEEEECCCcccch-------HHHHHH--
Confidence 699999999999999999999887 555443 55554 4444456777 789999999954321 111111
Q ss_pred HHhcCCCcEEEEEecCCCC--CCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTH--TRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~--t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.. ..+.++++.++... .........+..+...... ..|+++|+||+|...
T Consensus 71 -~~--~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 71 -YR--AVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRD 122 (161)
T ss_pred -Hh--hhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCc
Confidence 11 13444444333221 1111111233333333221 468999999999854
No 75
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.04 E-value=1.6e-09 Score=113.53 Aligned_cols=126 Identities=15% Similarity=0.224 Sum_probs=74.3
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
++|+|+|.+|||||||+|.+++..... .+.|.++. +......++| ..+.||||||+..... ....+.......
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~--~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~--~~~~e~~~~~~~ 76 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE--EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPG--TAGQEWMDPRFR 76 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc--ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCc--cchhHHHHHHHh
Confidence 589999999999999999999765322 23344432 3333455677 5677999999865321 111122221222
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhC-CCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLG-SSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG-~~v~k~vIVVLTKaD~l~ 602 (1109)
.++ .+|++++|.+++....-..-..+++.+..... .....|+++|.||+|+..
T Consensus 77 ~~~--~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~ 130 (198)
T cd04142 77 GLR--NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR 130 (198)
T ss_pred hhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc
Confidence 233 48999999877642210001123333443321 123479999999999853
No 76
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.04 E-value=1.3e-09 Score=108.12 Aligned_cols=116 Identities=13% Similarity=0.082 Sum_probs=69.6
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecC--CCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINA--FEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~--i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+|+|+|++|+|||||+|.|++......+. ....+|. .......+++.++.+|||||..... . ....+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~---~~~~~ 70 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR-------S---LWDKY 70 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH-------H---HHHHH
Confidence 58999999999999999998754321010 0112222 3334556678999999999985311 1 11223
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
+. ++|++++|++...... .......+...+.. ....|+++|+||+|...
T Consensus 71 ~~--~~~~~v~vvd~~~~~~---~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~ 121 (167)
T cd04160 71 YA--ECHAIIYVIDSTDRER---FEESKSALEKVLRNEALEGVPLLILANKQDLPD 121 (167)
T ss_pred hC--CCCEEEEEEECchHHH---HHHHHHHHHHHHhChhhcCCCEEEEEEcccccc
Confidence 33 4899999977653211 11222233332221 12479999999999743
No 77
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.04 E-value=2.1e-09 Score=107.71 Aligned_cols=113 Identities=12% Similarity=0.104 Sum_probs=71.9
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecC--------------CCCcee-EEEEEEEEECCEEEEEEeCCCCCCCCcchh
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINA--------------FEPATS-SVKVIAGLVHGVKIRIFDTPGLRSPAIGRT 536 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~--------------i~pgTT-rv~e~~~~i~G~~VtLIDTPGL~ds~~~~~ 536 (1109)
+|+|+|.+|+|||||+|+|++........ ...++| ........+.+..+.||||||..+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 58999999999999999999875532211 012222 23334455668899999999975321
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 537 VNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 537 ~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.. ...++. .+|++++|++..... .......+..+.. ...++++|+||+|+..
T Consensus 77 --~~----~~~~~~--~~d~~i~v~d~~~~~-~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 77 --SE----VIRGLS--VSDGAILVVDANEGV-QPQTREHLRIARE-----GGLPIIVAINKIDRVG 128 (189)
T ss_pred --HH----HHHHHH--hcCEEEEEEECCCCC-cHHHHHHHHHHHH-----CCCCeEEEEECCCCcc
Confidence 11 122222 389999997765422 2223344444433 2489999999999865
No 78
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.03 E-value=2.1e-09 Score=105.87 Aligned_cols=118 Identities=17% Similarity=0.157 Sum_probs=70.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+++|.+|||||||+|++++... +..+.+.+.........+++ ..+.+|||||..+.. .+ ...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~---~~~ 69 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS-------AM---REQ 69 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh-------HH---HHH
Confidence 47999999999999999999997643 23332322222233345666 467899999974321 11 122
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+++ ..|++++|++++....-..-..++..+..... ....|+++|.||+|+..
T Consensus 70 ~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 70 YMR--TGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEH 121 (164)
T ss_pred HHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCccccc
Confidence 333 37999999877642210001122333333221 12469999999999753
No 79
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.03 E-value=7.8e-09 Score=115.53 Aligned_cols=60 Identities=23% Similarity=0.369 Sum_probs=52.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~ 532 (1109)
.+|+|||.|+||||||+|+|++.+. .++++ +.||. +.....+++|.+|.++|+||+....
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~s-eva~y-~FTTl~~VPG~l~Y~ga~IQild~Pgii~ga 124 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKS-EVADY-PFTTLEPVPGMLEYKGAQIQLLDLPGIIEGA 124 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCc-ccccc-CceecccccceEeecCceEEEEcCcccccCc
Confidence 4899999999999999999999875 77887 77776 7788889999999999999987754
No 80
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.02 E-value=2.1e-09 Score=106.00 Aligned_cols=117 Identities=17% Similarity=0.139 Sum_probs=69.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC--CEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH--GVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~--G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+++|++|+|||||+|+|++...........+++ .......++ +..+.||||||... .......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~v~~~~~~~~~~i~D~~G~~~----------~~~~~~~~ 70 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAA-FLTQTVNLDDTTVKFEIWDTAGQER----------YRSLAPMY 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEEECCEEEEEEEEeCCchHH----------HHHHHHHH
Confidence 699999999999999999999876433111112211 112223344 36788999999521 11111122
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ .+|++++|++++....-.....++..+..... ...++++|.||+|...
T Consensus 71 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~ 120 (163)
T cd01860 71 YR--GAAAAIVVYDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLES 120 (163)
T ss_pred hc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 32 47999999877643211112334444544432 2468999999999753
No 81
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.01 E-value=3.4e-09 Score=103.47 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=68.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
+||+++|.+|+|||||+|+|++..... ...+.++ ........+.+ ..+.+|||||.... ... ...
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~---~~~ 68 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE--KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERY-------HAL---GPI 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC--CcCCccceeEEEEEEEECCEEEEEEEEECCchHHH-------HHh---hHH
Confidence 589999999999999999999875432 1112221 22222333334 46889999995221 111 111
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+++ .+|++++|++++....-..-..+++.+...... ..++++|+||+|...
T Consensus 69 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~ 119 (162)
T cd04123 69 YYR--DADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLER 119 (162)
T ss_pred Hhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 222 489999998776432111111233444444332 478999999999863
No 82
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.01 E-value=1.9e-09 Score=107.74 Aligned_cols=118 Identities=18% Similarity=0.194 Sum_probs=70.1
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCce--eEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT--SSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT--Trv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+++|.+|||||||+|++++... ... +.|.+ +.............+.+|||||..... .+. ..+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f-~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~---~~~ 69 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF-RES-YIPTIEDTYRQVISCSKNICTLQITDTTGSHQFP-------AMQ---RLS 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCC-cCCcchheEEEEEEECCEEEEEEEEECCCCCcch-------HHH---HHH
Confidence 6899999999999999999997642 211 11211 111111222234678899999985421 111 112
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC-CCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS-VWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~-v~k~vIVVLTKaD~l~ 602 (1109)
+. .+|++++|.+++....-.....++..+....+.. ...|+++|.||+|+..
T Consensus 70 ~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 70 IS--KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred hh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 22 4799999987765321111223445555544322 3478999999999854
No 83
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.01 E-value=2.2e-09 Score=105.52 Aligned_cols=117 Identities=18% Similarity=0.112 Sum_probs=68.1
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~ 551 (1109)
+|+++|.+|||||||+|.|++.... ...+.| |...........+.++.||||||..... . ....+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~-~~~~~~-t~g~~~~~~~~~~~~~~l~Dt~G~~~~~-------~---~~~~~~~- 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQ-SQIIVP-TVGFNVESFEKGNLSFTAFDMSGQGKYR-------G---LWEHYYK- 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCC-cceecC-ccccceEEEEECCEEEEEEECCCCHhhH-------H---HHHHHHc-
Confidence 5899999999999999999986421 112111 1111122234578899999999974311 1 1122333
Q ss_pred CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhC-CCCCCeEEEEEeccCCCC
Q 036930 552 FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLG-SSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 552 ~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG-~~v~k~vIVVLTKaD~l~ 602 (1109)
++|+++||++.+....-......+..+..... .....|+++|+||+|+..
T Consensus 68 -~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 68 -NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred -cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 48999999776542110001112333322111 112479999999999753
No 84
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.01 E-value=2.2e-09 Score=105.76 Aligned_cols=117 Identities=23% Similarity=0.200 Sum_probs=69.3
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+||+++|++|+|||||+|+|++...........+++ .......+++ ..+.||||||..... .....+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~g~~~~~----------~~~~~~ 69 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVD-FKVKTLTVDGKKVKLAIWDTAGQERFR----------TLTSSY 69 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccce-EEEEEEEECCEEEEEEEEECCCchhhh----------hhhHHH
Confidence 589999999999999999999875422111112221 1222223444 678999999963311 111223
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++ .+|++++|.+++....-..-..++..+.... .....++++|.||+|+.
T Consensus 70 ~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~~iv~nK~D~~ 119 (161)
T cd01863 70 YR--GAQGVILVYDVTRRDTFTNLETWLNELETYS-TNNDIVKMLVGNKIDKE 119 (161)
T ss_pred hC--CCCEEEEEEECCCHHHHHhHHHHHHHHHHhC-CCCCCcEEEEEECCccc
Confidence 33 4899999987764221111122334444332 23347889999999986
No 85
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.00 E-value=4e-09 Score=104.58 Aligned_cols=117 Identities=18% Similarity=0.167 Sum_probs=69.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+++|++|||||||+|+|++...... .....+++.......+++ ..+.||||||.... ..+ ...+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~---~~~~ 72 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD-SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERY-------RAI---TSAY 72 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEeCCChHHH-------HHH---HHHH
Confidence 6999999999999999999998764222 111222233333444555 46889999996321 111 1223
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ .++++++|.++.....-..-..++..+..... ...|+++|.||+|+..
T Consensus 73 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 73 YR--GAVGALLVYDITKKQTFENVERWLKELRDHAD--SNIVIMLVGNKSDLRH 122 (165)
T ss_pred HC--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 33 47989999777632111111123333333321 1368999999999753
No 86
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.00 E-value=3.3e-09 Score=103.59 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=68.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+||+++|.+|||||||+|++++... +..+.|.+.........+++. .+.+|||||.... ..+ ...+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~l---~~~~ 69 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY-------SAM---RDQY 69 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcch-------HHH---HHHH
Confidence 6899999999999999999997653 122222222222334455654 4678999996331 111 1123
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ ..|++++|++++....-..-...+..+.... .....|+++|.||+|+..
T Consensus 70 ~~--~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 70 MR--TGEGFLCVFAINSRKSFEDIHTYREQIKRVK-DSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred Hh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEECccccc
Confidence 33 3788888877764221000112233333322 122478999999999753
No 87
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.00 E-value=6e-09 Score=101.50 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=71.0
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
||+++|++|||||||+|+|++.. ....+.+.+.........+++ ..+.+|||||..... . ....++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~---~~~~~~ 68 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS-------A---MRDLYI 68 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-------H---HHHHHH
Confidence 68999999999999999999865 223332333223344445553 578899999974411 1 112233
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+ ..|++++|.+++....-..-..++..+..... ....|+++|.||+|...
T Consensus 69 ~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 69 R--QGDGFILVYSITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLEN 118 (160)
T ss_pred h--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCcccc
Confidence 3 37999999777643211111223333433322 13589999999999864
No 88
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.99 E-value=4.9e-09 Score=105.73 Aligned_cols=115 Identities=19% Similarity=0.262 Sum_probs=72.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..++|+++|++|||||||+|+|++.....+. .|.........+++.++.||||||.... ......+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~----~t~g~~~~~~~~~~~~l~l~D~~G~~~~----------~~~~~~~ 78 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTIS----PTLGFQIKTLEYEGYKLNIWDVGGQKTL----------RPYWRNY 78 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcC----CccccceEEEEECCEEEEEEECCCCHHH----------HHHHHHH
Confidence 4589999999999999999999987442221 1222222334457899999999997431 1112233
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
+. .+|+++||++.+.... ......++...+.. ....|+++|.||+|+..
T Consensus 79 ~~--~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 79 FE--STDALIWVVDSSDRLR---LDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred hC--CCCEEEEEEECCCHHH---HHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 33 4899999977765311 11122233333221 13479999999999853
No 89
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.98 E-value=4.9e-09 Score=104.27 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=69.1
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+++|++|||||||+|.+++.... .......+.........+++ .++.||||||.... ......+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~~~~~~~ 71 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF----------RTITSSY 71 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH----------HHHHHHH
Confidence 69999999999999999999976532 22111112223333444555 46889999995321 1111223
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ .+|++++|.+++....-..-..++..+.... ....|+++|.||+|+..
T Consensus 72 ~~--~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~ 121 (166)
T cd01869 72 YR--GAHGIIIVYDVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTD 121 (166)
T ss_pred hC--cCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhccc
Confidence 33 4899999987764221011112333333321 12368999999999753
No 90
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.98 E-value=7.8e-09 Score=102.22 Aligned_cols=116 Identities=18% Similarity=0.214 Sum_probs=68.2
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEE---CCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLV---HGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i---~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
++|+++|.+|||||||+++|.+........+ ..|+. +......+ ....+.+|||||... ...+ .
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~---~ 69 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNY-LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-------YSDM---V 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccC-CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-------HHHH---H
Confidence 5899999999999999999986421112232 22322 22222222 237899999999521 1111 2
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++++|.+++....-..-..++..+... ....|+++|.||+|+..
T Consensus 70 ~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~ 121 (164)
T cd04101 70 SNYWE--SPSVFILVYDVSNKASFENCSRWVNKVRTA---SKHMPGVLVGNKMDLAD 121 (164)
T ss_pred HHHhC--CCCEEEEEEECcCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECccccc
Confidence 23343 489999998876422111112233333332 13479999999999754
No 91
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.97 E-value=3.7e-09 Score=104.01 Aligned_cols=117 Identities=19% Similarity=0.166 Sum_probs=70.0
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+++|.+|||||||+|.+++.... ..+.|.+.........+++ ..+.||||||..... .+. ..+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~---~~~ 69 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT-------AMR---DLY 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCccccc-------hHH---HHH
Confidence 69999999999999999999965421 2222222223333445565 456789999974321 111 122
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ +.|++++|.+++....-..-..+++.+..... ....|+++|.||+|+..
T Consensus 70 ~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 70 IK--NGQGFVLVYSITSQSSFNDLQDLREQILRVKD-TENVPMVLVGNKCDLED 120 (163)
T ss_pred hh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 22 47999999877643211111223344443322 23478999999999753
No 92
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.97 E-value=1.2e-08 Score=111.03 Aligned_cols=124 Identities=20% Similarity=0.281 Sum_probs=75.1
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecC--CCCceeEEE--------E-------------------------------
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINA--FEPATSSVK--------V------------------------------- 510 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~--i~pgTTrv~--------e------------------------------- 510 (1109)
+|+|+|++|+||||++|+|+|...+..+. +....+++. .
T Consensus 28 ~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~~ 107 (240)
T smart00053 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGTN 107 (240)
T ss_pred eEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCCC
Confidence 79999999999999999999975332221 111111110 0
Q ss_pred -------EEEEE---CCEEEEEEeCCCCCCCCc---chhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCc-HHHH
Q 036930 511 -------IAGLV---HGVKIRIFDTPGLRSPAI---GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHND-LPLL 576 (1109)
Q Consensus 511 -------~~~~i---~G~~VtLIDTPGL~ds~~---~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD-~~lL 576 (1109)
...++ +...++||||||+..... .......+...+..+++. ..++||+|++... .....+ ..++
T Consensus 108 ~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~-~~~IIL~Vvda~~-d~~~~d~l~ia 185 (240)
T smart00053 108 KGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISK-EECLILAVTPANV-DLANSDALKLA 185 (240)
T ss_pred CcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhC-ccCeEEEEEECCC-CCCchhHHHHH
Confidence 01111 125689999999975321 122334555556667764 3569999976543 222223 3555
Q ss_pred HHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 577 KSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 577 k~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+.+... ++++|+|+||+|...
T Consensus 186 ~~ld~~-----~~rti~ViTK~D~~~ 206 (240)
T smart00053 186 KEVDPQ-----GERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHc-----CCcEEEEEECCCCCC
Confidence 555432 589999999999875
No 93
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.97 E-value=6e-09 Score=102.60 Aligned_cols=115 Identities=12% Similarity=0.117 Sum_probs=67.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCce-eEEEEEEEEEC----CEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT-SSVKVIAGLVH----GVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT-Trv~e~~~~i~----G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
++|+++|.+|+|||||+|.+++.... ..+.+.. .........+. ...+.||||||.... ..+ .
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~---~ 68 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT--KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEF-------DAI---T 68 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHH-------HHh---H
Confidence 58999999999999999999976431 1221221 12222233333 467999999995221 111 1
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..+++ .+|++++|.+++....-..-..++..+.... ...|+++|.||+|+..
T Consensus 69 ~~~~~--~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~ 120 (162)
T cd04106 69 KAYYR--GAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLD 120 (162)
T ss_pred HHHhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhccc
Confidence 22333 4899999987764321111112233333222 2468999999999864
No 94
>COG2262 HflX GTPases [General function prediction only]
Probab=98.96 E-value=1.5e-08 Score=116.19 Aligned_cols=126 Identities=17% Similarity=0.150 Sum_probs=79.2
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC-CEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH-GVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~-G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
..|+|+|-||+|||||+|+|++..+..-... ..|-........+. |+++.+.||-||...- ...++...+..+
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~L-FATLdpttR~~~l~~g~~vlLtDTVGFI~~L-----P~~LV~AFksTL 266 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQL-FATLDPTTRRIELGDGRKVLLTDTVGFIRDL-----PHPLVEAFKSTL 266 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccc-cccccCceeEEEeCCCceEEEecCccCcccC-----ChHHHHHHHHHH
Confidence 5789999999999999999998876432221 22222222233333 7999999999998742 123444444444
Q ss_pred hc-CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCC
Q 036930 550 KK-FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPD 604 (1109)
Q Consensus 550 k~-~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd 604 (1109)
.. ..+|++|+|++.+.......-....+.|.++ |.. ..|+|+|+||+|.+.+.
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~-~~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GAD-EIPIILVLNKIDLLEDE 320 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCC-CCCEEEEEecccccCch
Confidence 33 2589999998776543321111223333333 322 37999999999987644
No 95
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.96 E-value=4.4e-09 Score=117.10 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=85.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-EEEEEEeCCCCCCCCcc-hhhhHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-VKIRIFDTPGLRSPAIG-RTVNKKTLA 543 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-~~VtLIDTPGL~ds~~~-~~~~eeIl~ 543 (1109)
|+.-..|.|||-||+|||||+|+|...+. +|++| +.||- +......+++ .+++|.|.|||...+.. .......++
T Consensus 193 LKsiadvGLVG~PNAGKSTLL~als~AKp-kVa~Y-aFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr 270 (366)
T KOG1489|consen 193 LKSIADVGLVGFPNAGKSTLLNALSRAKP-KVAHY-AFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR 270 (366)
T ss_pred eeeecccceecCCCCcHHHHHHHhhccCC-ccccc-ceeeeccccceeeccccceeEeccCccccccccccCcccHHHHH
Confidence 33445677999999999999999998776 89998 77764 5555555554 44999999999886532 234445555
Q ss_pred HHHHHHhcCCCcEEEEEecCCCC---CCCCCcHHHHHHHHhhhC-CCCCCeEEEEEeccCCC
Q 036930 544 SIRKSIKKFPPDVVLYVDRLDTH---TRDHNDLPLLKSLTSSLG-SSVWQNAILCLTHAASE 601 (1109)
Q Consensus 544 ~Ikk~Lk~~gpDVVLLVvrlds~---t~d~eD~~lLk~I~e~FG-~~v~k~vIVVLTKaD~l 601 (1109)
.|.+ ...++||+++... +.. ++.++|..=.+.+. ....++.+||.||+|..
T Consensus 271 HiER------~~~l~fVvD~s~~~~~~p~-~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ 325 (366)
T KOG1489|consen 271 HIER------CKGLLFVVDLSGKQLRNPW-QQLQLLIEELELYEKGLADRPALIVANKIDLP 325 (366)
T ss_pred HHHh------hceEEEEEECCCcccCCHH-HHHHHHHHHHHHHhhhhccCceEEEEeccCch
Confidence 5544 5889999888765 221 12333322222232 23458899999999974
No 96
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.96 E-value=4.7e-09 Score=103.38 Aligned_cols=113 Identities=15% Similarity=0.118 Sum_probs=69.8
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~ 551 (1109)
||+++|.+|||||||+|++++..... . ..|.........+.+..+.+|||||..... . ....+++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~---~-~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~---~~~~~~~- 65 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT---T-IPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------P---LWKHYYE- 65 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCC---C-CCCcCcceEEEEECCEEEEEEECCCChhhH-------H---HHHHHhc-
Confidence 68999999999999999999886321 1 122222233345678899999999975321 1 1122333
Q ss_pred CCCcEEEEEecCCCC-CCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 552 FPPDVVLYVDRLDTH-TRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 552 ~gpDVVLLVvrlds~-t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+|++++|+++... ++.. -...+..+..... ....|+++|.||+|...
T Consensus 66 -~~~~~i~v~D~~~~~~~~~-~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 66 -NTNGIIFVVDSSDRERIEE-AKEELHKLLNEEE-LKGVPLLIFANKQDLPG 114 (158)
T ss_pred -cCCEEEEEEECCCHHHHHH-HHHHHHHHHhCcc-cCCCcEEEEeeccCCcc
Confidence 47999999777643 1111 1122222222111 22479999999999864
No 97
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.96 E-value=3.8e-09 Score=105.54 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=67.3
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
++|+|+|.+|||||||++.+++... .... ..|.. +......+++ ..+.+|||||..... . ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~---~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY-EPQQ--LSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ-------T---MHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-CCCc--CCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh-------h---hhH
Confidence 5899999999999999999987542 1111 11211 2223333444 567899999963211 1 122
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAAS 600 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~ 600 (1109)
.+++ .+|++|+|++++..........++..+.... ...|+++|.||+|+
T Consensus 68 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~p~ivv~nK~Dl 116 (161)
T cd04124 68 SYYH--KAHACILVFDVTRKITYKNLSKWYEELREYR---PEIPCIVVANKIDL 116 (161)
T ss_pred HHhC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEECccC
Confidence 2333 4899999987764221111123444444332 24799999999997
No 98
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.95 E-value=8.4e-09 Score=106.07 Aligned_cols=115 Identities=14% Similarity=0.164 Sum_probs=71.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
...++|+++|.+|||||||+|.|.+.....+. | |.........+++.++.++||||.... ... ...
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~---~-t~~~~~~~~~~~~~~~~~~D~~G~~~~-------~~~---~~~ 80 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ---P-TQHPTSEELAIGNIKFTTFDLGGHQQA-------RRL---WKD 80 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccC---C-ccccceEEEEECCEEEEEEECCCCHHH-------HHH---HHH
Confidence 34589999999999999999999987543221 1 222233444567899999999997431 111 122
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l 601 (1109)
++. .+|+++||++...... .......+.+.+.. ....|+++|.||+|+.
T Consensus 81 ~~~--~ad~ii~vvD~~~~~~---~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 131 (184)
T smart00178 81 YFP--EVNGIVYLVDAYDKER---FAESKRELDALLSDEELATVPFLILGNKIDAP 131 (184)
T ss_pred HhC--CCCEEEEEEECCcHHH---HHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 333 4899999977654211 11112223222221 1247899999999973
No 99
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.95 E-value=8.6e-09 Score=103.01 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=67.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCce-eEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT-SSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT-Trv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
++|+++|.+|||||||+|.|++.... ..+.+.+ ..........++ ..+.+|||||..... .+ ...
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~-------~~---~~~ 69 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFT--SAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR-------TI---TTA 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-------HH---HHH
Confidence 68999999999999999999986531 1221211 122222223343 678899999963211 11 122
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+++ ++|++++|.+++....-..-..+++.+..... ...|+++|.||+|+..
T Consensus 70 ~~~--~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piivv~nK~Dl~~ 120 (165)
T cd01865 70 YYR--GAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVILVGNKCDMED 120 (165)
T ss_pred Hcc--CCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCCEEEEEECcccCc
Confidence 222 58999999777542211111223333333221 2468999999999854
No 100
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.95 E-value=3.1e-09 Score=111.86 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=72.1
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceec------------------------C-----CCCceeE-EEEEEEEECCEEEE
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTIN------------------------A-----FEPATSS-VKVIAGLVHGVKIR 521 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs------------------------~-----i~pgTTr-v~e~~~~i~G~~Vt 521 (1109)
||+|+|.+|+|||||+|+|+....+.+. + ...++|+ .......+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999875543321 0 0145555 44556678899999
Q ss_pred EEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 522 IFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 522 LIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
||||||+.+- ...+. ..+. .+|++|+|++.... ....+...+..+. .++ .+++|+|+||+|..
T Consensus 81 liDTpG~~~~------~~~~~----~~~~--~ad~~llVvD~~~~-~~~~~~~~~~~~~-~~~---~~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQY------TRNMV----TGAS--TADLAILLVDARKG-VLEQTRRHSYILS-LLG---IRHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHHH------HHHHH----Hhhh--hCCEEEEEEECCCC-ccHhHHHHHHHHH-HcC---CCcEEEEEEchhcc
Confidence 9999997321 11122 2222 48999999876542 2222333333332 222 25678899999975
No 101
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.95 E-value=5.8e-09 Score=104.43 Aligned_cols=117 Identities=17% Similarity=0.205 Sum_probs=69.2
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCce-eEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT-SSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT-Trv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
.+||+++|++|||||||+|.+++... .. .+.+.+ .........+++ ..+.||||||..... . ...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f-~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~---~~~ 70 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSF-NP-SFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR-------T---ITT 70 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcC-Cc-ccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH-------H---HHH
Confidence 47999999999999999999997653 21 111211 122222334455 568899999953211 1 112
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+++ .+|++++|.+++....-..-..++..+.... ....|+++|.||+|+..
T Consensus 71 ~~~~--~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 71 AYYR--GAMGIILVYDITDEKSFENIRNWMRNIEEHA--SEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHhC--CCCEEEEEEECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEECccccc
Confidence 3333 4899999987764221001122333333321 12468999999999864
No 102
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.94 E-value=1.1e-08 Score=101.38 Aligned_cols=119 Identities=15% Similarity=0.109 Sum_probs=68.0
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+||+++|++|||||||+|+|++.... .......+.........+.+ ..+.||||||..... . ....+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~---~~~~~ 69 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------S---LGVAF 69 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------h---HHHHH
Confidence 58999999999999999999987532 11111112122222334555 456699999963211 1 11223
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
++ ++|++|+|.+++....-.....+...+...+.. ....|+++|.||+|+..
T Consensus 70 ~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 70 YR--GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred hc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 33 489999998776422100011222222222221 12478999999999864
No 103
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.94 E-value=5.6e-09 Score=103.25 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=68.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+||+|+|.+|||||||+|++++.... ..+.+.+.........+++ ..+.+|||||..... .+ ...+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~-------~~---~~~~ 68 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS-------AM---RDQY 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccch-------HH---HHHH
Confidence 48999999999999999999976532 2222322222333444555 567799999975421 11 1122
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ ..|++++|.+++....-..-......+.+... ....|+++|.||+|+..
T Consensus 69 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 69 MR--TGEGFLLVYSITDRQSFEEIKKFREQILRVKD-RDDVPIVLVGNKCDLES 119 (164)
T ss_pred Hh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 33 37999999777642110001122233333322 12468999999999754
No 104
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.94 E-value=7.5e-09 Score=106.73 Aligned_cols=117 Identities=17% Similarity=0.189 Sum_probs=69.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
+||+|+|.+|||||||+|.+++... ..+.+.+.+.. .......+++ ..+.||||||-.. .......
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 69 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER----------FRSVTHA 69 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHH----------HHHhhHH
Confidence 5899999999999999999987653 33332222221 2222344555 5678999999421 1111122
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+++ .+|++++|++++....-..-..++..+...... ..|+++|.||+|+..
T Consensus 70 ~~~--~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~ 120 (191)
T cd04112 70 YYR--DAHALLLLYDITNKASFDNIRAWLTEIKEYAQE--DVVIMLLGNKADMSG 120 (191)
T ss_pred Hcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccchh
Confidence 333 489999998776432101112234444443321 468999999999853
No 105
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.93 E-value=1.1e-08 Score=107.58 Aligned_cols=115 Identities=13% Similarity=0.040 Sum_probs=74.2
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCC------cce---ecC-----CCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcc
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEE------KST---INA-----FEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIG 534 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~------va~---Vs~-----i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~ 534 (1109)
.++|+++|.+++|||||+++|++.. ... +.+ ...++|. .......+++.+++||||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD---- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHH----
Confidence 4789999999999999999998641 100 001 1234444 44445566789999999999843
Q ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 535 RTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 535 ~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
....+...+. .+|++++|++... .....+..++..+... + ..++|+|+||+|..
T Consensus 78 ------~~~~~~~~~~--~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-~---~~~iIvviNK~D~~ 131 (195)
T cd01884 78 ------YIKNMITGAA--QMDGAILVVSATD-GPMPQTREHLLLARQV-G---VPYIVVFLNKADMV 131 (195)
T ss_pred ------HHHHHHHHhh--hCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C---CCcEEEEEeCCCCC
Confidence 2222223333 4899999977654 2333455666655543 2 23478999999985
No 106
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.93 E-value=7.2e-09 Score=99.88 Aligned_cols=112 Identities=16% Similarity=0.124 Sum_probs=67.1
Q ss_pred EEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcC
Q 036930 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKF 552 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~ 552 (1109)
|+|+|++|||||||+|.|++.... ....| |+.........++..+.+|||||.... ......++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~~~~-- 66 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS--EDTIP-TVGFNMRKVTKGNVTLKVWDLGGQPRF----------RSMWERYCR-- 66 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC--cCccC-CCCcceEEEEECCEEEEEEECCCCHhH----------HHHHHHHHh--
Confidence 789999999999999999987532 12112 222222234456788999999997321 111223333
Q ss_pred CCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 553 PPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 553 gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
.+|++++|++++.... .......+...+.. ....|+++|+||+|...
T Consensus 67 ~~d~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 115 (159)
T cd04159 67 GVNAIVYVVDAADRTA---LEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPG 115 (159)
T ss_pred cCCEEEEEEECCCHHH---HHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 4899999977654211 11112222222211 12468999999999753
No 107
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.92 E-value=1e-08 Score=105.91 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=69.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCCC-cceec----C---------CCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcch
Q 036930 471 LNILVLGKTGVGKSATINSIFGEE-KSTIN----A---------FEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGR 535 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~-va~Vs----~---------i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~ 535 (1109)
-+|+++|.+|||||||+|+|++.. .+... . ...++|. ........++.++.||||||..+..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG--- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence 379999999999999999999631 11110 0 0122322 3344556678999999999985411
Q ss_pred hhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 536 TVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 536 ~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.....++. ++|++++|+++..... .....+++.+.. ...|+++|+||+|+.
T Consensus 80 -------~~~~~~~~--~~d~~ilV~d~~~~~~-~~~~~~~~~~~~-----~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 80 -------GEVERVLS--MVDGVLLLVDASEGPM-PQTRFVLKKALE-----LGLKPIVVINKIDRP 130 (194)
T ss_pred -------HHHHHHHH--hcCEEEEEEECCCCcc-HHHHHHHHHHHH-----cCCCEEEEEECCCCC
Confidence 11222333 4899999987764221 112233333322 136899999999985
No 108
>PLN03118 Rab family protein; Provisional
Probab=98.92 E-value=6.5e-09 Score=108.96 Aligned_cols=120 Identities=20% Similarity=0.274 Sum_probs=70.5
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLA 543 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~ 543 (1109)
....++|+|+|.+|||||||+|+|++....... +.+. ........+++ ..+.||||||..... .+
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~-- 78 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLA---PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR-------TL-- 78 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcC---CCceeEEEEEEEEECCEEEEEEEEECCCchhhH-------HH--
Confidence 345689999999999999999999987642222 2221 22223334454 578899999974321 11
Q ss_pred HHHHHHhcCCCcEEEEEecCCCCCCCCCcH-HHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 544 SIRKSIKKFPPDVVLYVDRLDTHTRDHNDL-PLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 544 ~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~-~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...+++ .+|++++|++++....- ... .++..+...+......++++|.||+|+..
T Consensus 79 -~~~~~~--~~d~~vlv~D~~~~~sf-~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 79 -TSSYYR--NAQGIILVYDVTRRETF-TNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred -HHHHHh--cCCEEEEEEECCCHHHH-HHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 122333 47999999877642210 011 11111222222223358899999999753
No 109
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.91 E-value=9.6e-09 Score=105.21 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=69.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
+||+|+|.+|||||||+|++++... ..+.+ ..|.. .......++|. .+.+|||||..... .+ ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~-~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~---~~ 68 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRF-LVGPY-QNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE-------AM---SR 68 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCc-CCcCc-ccceeeEEEEEEEEECCEEEEEEEEECCCchhhh-------hh---hH
Confidence 5899999999999999999997543 33333 22322 22234456664 45699999974321 11 11
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. ++|+++||.+++....-.....+++.+... ....|+++|.||+|+..
T Consensus 69 ~~~~--~~d~iilv~d~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 69 IYYR--GAKAAIVCYDLTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIE 119 (193)
T ss_pred hhcC--CCCEEEEEEECCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccc
Confidence 1222 489999998776432111112334444332 12478999999999754
No 110
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.91 E-value=9.4e-09 Score=104.84 Aligned_cols=114 Identities=14% Similarity=0.113 Sum_probs=72.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
...+|+++|++|||||||+|.|.+..... + ..|.........+.+.++.++||||.... . .....+
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~---~-~~T~~~~~~~i~~~~~~~~l~D~~G~~~~-------~---~~~~~~ 83 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQ---H-VPTLHPTSEELTIGNIKFKTFDLGGHEQA-------R---RLWKDY 83 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcc---c-CCccCcceEEEEECCEEEEEEECCCCHHH-------H---HHHHHH
Confidence 46899999999999999999999865422 1 11322334455678899999999995321 1 111233
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l 601 (1109)
+. ++|++++|+++..... -......+...+.. ....|+++|.||+|+.
T Consensus 84 ~~--~ad~iilV~D~~~~~s---~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~ 133 (190)
T cd00879 84 FP--EVDGIVFLVDAADPER---FQESKEELDSLLSDEELANVPFLILGNKIDLP 133 (190)
T ss_pred hc--cCCEEEEEEECCcHHH---HHHHHHHHHHHHcCccccCCCEEEEEeCCCCC
Confidence 33 4799999977653211 01122333333322 2347999999999974
No 111
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.91 E-value=6e-09 Score=117.13 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=85.8
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEE-CCEEEEEEeCCCCCCCCcc-hhhhHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLV-HGVKIRIFDTPGLRSPAIG-RTVNKKTLASIRKS 548 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i-~G~~VtLIDTPGL~ds~~~-~~~~eeIl~~Ikk~ 548 (1109)
-|.|||-||+|||||||++...+. ++++| |.||- +......+ .+..+++.|.|||.+.+.. .......++.|.+|
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadY-pFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADY-PFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC-cccCC-ccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 356999999999999999998776 88998 88887 45444444 4677999999999987643 24455666666654
Q ss_pred HhcCCCcEEEEEecCCCCCC-C-CCcHHHH-HHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTR-D-HNDLPLL-KSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~-d-~eD~~lL-k~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
-++++|++++.... + .++...+ ..+..+-..-..++.+||+||+|...
T Consensus 239 ------~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 239 ------RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred ------heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 68889987775331 1 1233333 33433322334689999999999654
No 112
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.91 E-value=1.3e-08 Score=107.21 Aligned_cols=118 Identities=18% Similarity=0.165 Sum_probs=70.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEEC---CEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVH---GVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~---G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
++|+++|.+|||||||+|.|++... . ..+.+..+ ........+. ...+.||||||.... ..+ +.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~-~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~-------~~l---~~ 68 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF-G-KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIG-------GKM---LD 68 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-C-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHH-------HHH---HH
Confidence 5899999999999999999997642 1 22222221 2333334443 367889999995221 111 22
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC-CCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS-SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~-~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++|+|.+++....-..-..++..+.+.... ....++++|.||+|+..
T Consensus 69 ~~~~--~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 69 KYIY--GAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 2333 489999998876432111112344455554432 12346889999999853
No 113
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.91 E-value=3.6e-09 Score=104.84 Aligned_cols=117 Identities=18% Similarity=0.131 Sum_probs=69.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC--CEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH--GVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~--G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+||+++|.+|||||||+|.|++.... ... .+...........+. ...+.+|||||...... . ....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~-------~---~~~~ 68 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-TEY-VPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR-------L---RPLS 68 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCC-CCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-------c---chhh
Confidence 58999999999999999999987641 111 122211122222333 35688999999754211 0 0011
Q ss_pred HhcCCCcEEEEEecCCCC-CCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTH-TRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPD 604 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~-t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd 604 (1109)
+ ..+|++++|.+++.. ++......++..+..... ..|+++|.||+|+..+.
T Consensus 69 ~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 69 Y--PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDDE 120 (171)
T ss_pred c--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhch
Confidence 1 248999999877642 221111223333333322 58999999999986543
No 114
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.90 E-value=1.6e-08 Score=99.72 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=66.3
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEE-CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLV-HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK 550 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i-~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk 550 (1109)
+|+++|.+|||||||+|+|++....... | |.......... ....+.++||||..... . ....++.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~---~-t~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~---~~~~~~~ 66 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTI---P-TVGFNVEMLQLEKHLSLTVWDVGGQEKMR-------T---VWKCYLE 66 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccccc---C-ccCcceEEEEeCCceEEEEEECCCCHhHH-------H---HHHHHhc
Confidence 5899999999999999999987653221 1 22111112222 35789999999974311 1 1122233
Q ss_pred cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC--CCCeEEEEEeccCCC
Q 036930 551 KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS--VWQNAILCLTHAASE 601 (1109)
Q Consensus 551 ~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~--v~k~vIVVLTKaD~l 601 (1109)
.+|+++||++.+.... ...+..++...+... ...|+++|+||+|+.
T Consensus 67 --~~~~iv~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (160)
T cd04156 67 --NTDGLVYVVDSSDEAR---LDESQKELKHILKNEHIKGVPVVLLANKQDLP 114 (160)
T ss_pred --cCCEEEEEEECCcHHH---HHHHHHHHHHHHhchhhcCCCEEEEEECcccc
Confidence 4799999977654220 112222333322211 247999999999974
No 115
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.89 E-value=1.9e-08 Score=102.00 Aligned_cols=114 Identities=15% Similarity=0.131 Sum_probs=70.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..++|+++|.+|||||||++.|...... .+.| |+.+........+..+.+|||||.... ..+ ...+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~---~~~~-t~g~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~---~~~~ 73 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV---TTIP-TVGFNVETVTYKNVKFNVWDVGGQDKI-------RPL---WRHY 73 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc---cccC-CcccceEEEEECCEEEEEEECCCCHHH-------HHH---HHHH
Confidence 3589999999999999999999864421 1222 222222233457799999999998421 111 1123
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC--CCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS--VWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~--v~k~vIVVLTKaD~l 601 (1109)
++ ++|+++||++++.... -..+.+++.+.+... ...|+++|.||+|+.
T Consensus 74 ~~--~a~~ii~v~D~t~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 123 (168)
T cd04149 74 YT--GTQGLIFVVDSADRDR---IDEARQELHRIINDREMRDALLLVFANKQDLP 123 (168)
T ss_pred hc--cCCEEEEEEeCCchhh---HHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc
Confidence 33 4899999987764321 122333343333221 236899999999974
No 116
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.89 E-value=1.1e-08 Score=101.60 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=69.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+++|.+|||||||+|+++... + +..+.+.+.........+++ ..+.+|||||..... .+.. .
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~---~ 68 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGI-F-VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT-------AMRD---L 68 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCC-C-CcccCCcchheEEEEEEECCEEEEEEEEECCCcccch-------hHHH---H
Confidence 3689999999999999999998542 2 22232322223333455565 456689999974321 1111 1
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+++ +.|++++|.+++....-..-..++..+..... ....|+++|.||+|+..
T Consensus 69 ~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 69 YMK--NGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 120 (164)
T ss_pred HHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchh
Confidence 222 47999999877642211111223344433221 22468999999999853
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.89 E-value=1.5e-08 Score=100.52 Aligned_cols=111 Identities=20% Similarity=0.167 Sum_probs=67.3
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~ 551 (1109)
||+|+|.+|||||||+|+|....... ..| |...........+..+.+|||||..... . ....+++
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~---~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~---~~~~~~~- 65 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT---TIP-TIGFNVETVTYKNLKFQVWDLGGQTSIR-------P---YWRCYYS- 65 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC---cCC-ccCcCeEEEEECCEEEEEEECCCCHHHH-------H---HHHHHhc-
Confidence 68999999999999999997654321 112 2222222344578899999999984311 1 1122333
Q ss_pred CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCC
Q 036930 552 FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASE 601 (1109)
Q Consensus 552 ~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l 601 (1109)
.+|++|+|++++.... .....+.+...+.. ....|+++|+||+|+.
T Consensus 66 -~~~~ii~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 66 -NTDAIIYVVDSTDRDR---LGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred -CCCEEEEEEECCCHHH---HHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 4899999987664211 01112222222211 1247999999999974
No 118
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.89 E-value=1.5e-08 Score=99.45 Aligned_cols=117 Identities=19% Similarity=0.193 Sum_probs=68.0
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+||+++|.+|||||||+|+|+..... ..+.+.+.........+++ ..+.+|||||..... . ....+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~---~~~~~ 68 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA-------A---IRDNY 68 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-------H---HHHHH
Confidence 58999999999999999999975432 2332222222222334444 568899999964321 1 11123
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ ..|.+++|++++....-..-...+..+..... ....|+++|+||+|+..
T Consensus 69 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 69 HR--SGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred hh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 33 36888888766542110001122333333211 23589999999999854
No 119
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.88 E-value=1.3e-08 Score=123.17 Aligned_cols=112 Identities=25% Similarity=0.307 Sum_probs=76.3
Q ss_pred ecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCc
Q 036930 477 GKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPD 555 (1109)
Q Consensus 477 GkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpD 555 (1109)
|.+|||||||+|+|+|... .++.+ |+||. .......+++.++.+|||||..+-... ...+.+. +.++....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~-pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~-s~~e~v~---~~~l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNW-PGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTF-SLEEEVA---RDYLLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCC-CCeEEEEEEEEEEECCeEEEEEECCCccccCcc-chHHHHH---HHHHhhcCCC
Confidence 8999999999999999864 77776 77776 556667788999999999998763311 1122222 2233334689
Q ss_pred EEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 556 VVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 556 VVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++++|++.+. .+. .......+.+. ..|+++|+||+|+..
T Consensus 75 vvI~VvDat~--ler-~l~l~~ql~~~-----~~PiIIVlNK~Dl~~ 113 (591)
T TIGR00437 75 LVVNVVDASN--LER-NLYLTLQLLEL-----GIPMILALNLVDEAE 113 (591)
T ss_pred EEEEEecCCc--chh-hHHHHHHHHhc-----CCCEEEEEehhHHHH
Confidence 9999976654 221 23333333332 479999999999854
No 120
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.88 E-value=1.1e-08 Score=104.89 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=67.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCce-eEEEEEEEE---ECCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT-SSVKVIAGL---VHGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT-Trv~e~~~~---i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
.++|+++|.+|||||||+|++++.... ... |.+ ......... ..+..+.+|||||.... ..+ .
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~-~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~---~ 69 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTV-PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL-------RPL---W 69 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcC-CccccceeEEEeeccCCCceEEEEEECCCcHhH-------HHH---H
Confidence 579999999999999999999876532 111 211 112222222 24688999999996321 111 1
Q ss_pred HHHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..+++ .+|+++||++++... ... -...+..+..... ....|+++|+||+|..
T Consensus 70 ~~~~~--~~d~ii~v~D~~~~~~~~~-~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 70 KSYTR--CTDGIVFVVDSVDVERMEE-AKTELHKITRFSE-NQGVPVLVLANKQDLP 122 (183)
T ss_pred HHHhc--cCCEEEEEEECCCHHHHHH-HHHHHHHHHhhhh-cCCCcEEEEEECcCcc
Confidence 22232 489999997765421 110 1112222332221 2247999999999974
No 121
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.88 E-value=1.5e-08 Score=117.82 Aligned_cols=118 Identities=18% Similarity=0.156 Sum_probs=77.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceec------------------------C-----CCCceeE-EEEEEEEECCE
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTIN------------------------A-----FEPATSS-VKVIAGLVHGV 518 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs------------------------~-----i~pgTTr-v~e~~~~i~G~ 518 (1109)
..++|+++|.+++|||||+|.|+........ + ..+++|+ +......+++.
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 4689999999999999999999854332211 1 1356666 66677778899
Q ss_pred EEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCC-CCCCCcHHHHHHHHhhhCCCCCCeEEEEEec
Q 036930 519 KIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTH-TRDHNDLPLLKSLTSSLGSSVWQNAILCLTH 597 (1109)
Q Consensus 519 ~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~-t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTK 597 (1109)
++.||||||..+.. ..+... + ..+|++|+|++.+.. .........+..+. .++ .+++++|+||
T Consensus 85 ~i~liDtpG~~~~~------~~~~~~----~--~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~-~~~---~~~iivviNK 148 (425)
T PRK12317 85 YFTIVDCPGHRDFV------KNMITG----A--SQADAAVLVVAADDAGGVMPQTREHVFLAR-TLG---INQLIVAINK 148 (425)
T ss_pred EEEEEECCCcccch------hhHhhc----h--hcCCEEEEEEEcccCCCCCcchHHHHHHHH-HcC---CCeEEEEEEc
Confidence 99999999974321 111111 2 248999999887641 23333444444333 333 2578999999
Q ss_pred cCCCC
Q 036930 598 AASEP 602 (1109)
Q Consensus 598 aD~l~ 602 (1109)
+|+..
T Consensus 149 ~Dl~~ 153 (425)
T PRK12317 149 MDAVN 153 (425)
T ss_pred ccccc
Confidence 99753
No 122
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.88 E-value=2.2e-08 Score=100.09 Aligned_cols=115 Identities=20% Similarity=0.205 Sum_probs=68.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
++|+++|.+|||||||+|.+++... . ..+ +.|.. .......+++ .++.||||||.... .....
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~-~-~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------~~~~~ 69 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKF-M-ADC-PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERF----------RAVTR 69 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-C-CCC-CcccceeEEEEEEEECCEEEEEEEEECCCcHHH----------HHHHH
Confidence 7999999999999999999997642 1 222 33332 2223334555 46789999996321 11122
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+++ ++|++++|.+++....-..-..++..+..... ...++++|.||+|+..
T Consensus 70 ~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 70 SYYR--GAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIFLIGNKADLEA 121 (166)
T ss_pred HHhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 2333 48999999877653210001122333322211 2368999999999853
No 123
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.88 E-value=7e-09 Score=103.27 Aligned_cols=117 Identities=22% Similarity=0.238 Sum_probs=68.5
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
+|+|+|.+|||||||+++++.... ++.+.+.+.........+++. .+.||||||...... .... .++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----~~~~----~~~ 69 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT-----EQLE----RSI 69 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc-----chHH----HHH
Confidence 589999999999999999986432 233322221222333455554 577999999864211 0111 222
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+ .+|++++|.+++....-..-..++..+..........|+++|.||+|+.
T Consensus 70 ~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 119 (165)
T cd04146 70 R--WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL 119 (165)
T ss_pred H--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH
Confidence 2 3899999987764321000122334444332112247899999999974
No 124
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.87 E-value=1.2e-08 Score=102.47 Aligned_cols=112 Identities=12% Similarity=0.108 Sum_probs=65.6
Q ss_pred EEEEEecCCCChhHHHHHHhCCCccee-----cCC--------CCceeE-EEEEEEEE-----CCEEEEEEeCCCCCCCC
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTI-----NAF--------EPATSS-VKVIAGLV-----HGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~V-----s~i--------~pgTTr-v~e~~~~i-----~G~~VtLIDTPGL~ds~ 532 (1109)
+|+++|.+|||||||+|+|++...... ..+ ..++|. .......+ .+..+.||||||..+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 699999999999999999987432110 011 012222 22222222 35778899999996521
Q ss_pred cchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 533 IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 533 ~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.. ...++. .+|++++|+++... ....+...+..+.. ...++++|+||+|+.
T Consensus 82 ------~~----~~~~~~--~ad~~i~v~D~~~~-~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~ 132 (179)
T cd01890 82 ------YE----VSRSLA--ACEGALLLVDATQG-VEAQTLANFYLALE-----NNLEIIPVINKIDLP 132 (179)
T ss_pred ------HH----HHHHHH--hcCeEEEEEECCCC-ccHhhHHHHHHHHH-----cCCCEEEEEECCCCC
Confidence 11 222333 38999999876542 11123333332221 136899999999974
No 125
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.87 E-value=3e-08 Score=99.07 Aligned_cols=118 Identities=19% Similarity=0.153 Sum_probs=68.6
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+++|.+|||||||+|.+++... ........+.........+++ ..+.+|||||.... ..+ ...
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~---~~~ 73 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERF-------RSL---RTP 73 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC-CcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHH-------HHh---HHH
Confidence 37999999999999999999987543 221111111222223344555 45678999995221 111 122
Q ss_pred HHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l 601 (1109)
+++ .+|++++|.+++... +. .-..++..+...... ....|+++|.||+|+.
T Consensus 74 ~~~--~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 74 FYR--GSDCCLLTFAVDDSQSFQ-NLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred Hhc--CCCEEEEEEECCCHHHHH-hHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 333 479999998777532 21 112233333333221 1236899999999975
No 126
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.87 E-value=2.8e-08 Score=98.72 Aligned_cols=117 Identities=13% Similarity=0.169 Sum_probs=68.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
-++|+++|.+|||||||++.|++..... .. .+..+ .+......+.+ ..+.++||||..... ....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~ 74 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPP-GQ-GATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR----------SITQ 74 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCC-CC-CCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH----------HHHH
Confidence 4799999999999999999998654311 11 11111 23333445666 457889999963211 1112
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++.......-..++..+..... ...++++|.||+|+..
T Consensus 75 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 75 SYYR--SANALILTYDITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAE 126 (169)
T ss_pred HHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 2333 48999999776532110001123333433322 1367899999999754
No 127
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.87 E-value=1.6e-08 Score=102.14 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=68.3
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~ 551 (1109)
+|+++|.+|||||||+|.|.+.......+ |.........+.+..+.++||||.... .. ....++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~----t~g~~~~~~~~~~~~~~i~D~~G~~~~-------~~---~~~~~~~- 65 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAP----TVGFTPTKLRLDKYEVCIFDLGGGANF-------RG---IWVNYYA- 65 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccC----cccceEEEEEECCEEEEEEECCCcHHH-------HH---HHHHHHc-
Confidence 48999999999999999999873222222 111222344567899999999996321 11 1123333
Q ss_pred CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCC
Q 036930 552 FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASE 601 (1109)
Q Consensus 552 ~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l 601 (1109)
.+|+++||++.+.... ...+..++...+.. ....|+++|.||+|+.
T Consensus 66 -~a~~ii~V~D~s~~~s---~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~ 113 (167)
T cd04161 66 -EAHGLVFVVDSSDDDR---VQEVKEILRELLQHPRVSGKPILVLANKQDKK 113 (167)
T ss_pred -CCCEEEEEEECCchhH---HHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence 4899999977664321 11122233332221 1247999999999974
No 128
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.87 E-value=1.1e-08 Score=103.11 Aligned_cols=111 Identities=15% Similarity=0.118 Sum_probs=70.0
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~ 551 (1109)
||+|+|.+|||||||+|+|.+... ..+ ..|+.+........+.++.||||||..... .. ...++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~---~~~-~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~-------~~---~~~~~~- 65 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF---MQP-IPTIGFNVETVEYKNLKFTIWDVGGKHKLR-------PL---WKHYYL- 65 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC---CCc-CCcCceeEEEEEECCEEEEEEECCCChhcc-------hH---HHHHhc-
Confidence 689999999999999999998632 122 223333333456678999999999975421 11 112222
Q ss_pred CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC--CCCeEEEEEeccCCC
Q 036930 552 FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS--VWQNAILCLTHAASE 601 (1109)
Q Consensus 552 ~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~--v~k~vIVVLTKaD~l 601 (1109)
++|+++||++++.... -..+..++...+... ...|++||.||+|+.
T Consensus 66 -~ad~ii~V~D~s~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 113 (169)
T cd04158 66 -NTQAVVFVVDSSHRDR---VSEAHSELAKLLTEKELRDALLLIFANKQDVA 113 (169)
T ss_pred -cCCEEEEEEeCCcHHH---HHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc
Confidence 4899999987765321 112233333333221 236899999999974
No 129
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.87 E-value=7.5e-09 Score=104.00 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=46.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGL 528 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL 528 (1109)
..++|+++|.||||||||||+|++...+.++.. |+||+..... . .+..+.|+||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~~-~-~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQYI-T-LMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEEE-E-cCCCEEEEECcCC
Confidence 457899999999999999999999999899996 8887732221 1 2445899999996
No 130
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.87 E-value=2.1e-08 Score=100.84 Aligned_cols=118 Identities=15% Similarity=0.188 Sum_probs=69.2
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCce-eEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT-SSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT-Trv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
++|+++|++|||||||+|.+++... .. ...+.. .........+.+ ..+.+|||||..... ..+ ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~---~~~ 71 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF-PE-RTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR------KSM---VQH 71 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CC-ccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHH------Hhh---HHH
Confidence 6899999999999999999987542 11 111111 112233344555 678899999963210 011 122
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+++ .+|++++|.+++....-..-..++..+.... .....|+++|.||+|+..
T Consensus 72 ~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 72 YYR--NVHAVVFVYDVTNMASFHSLPSWIEECEQHS-LPNEVPRILVGNKCDLRE 123 (170)
T ss_pred hhc--CCCEEEEEEECCCHHHHHhHHHHHHHHHHhc-CCCCCCEEEEEECccchh
Confidence 222 4899999988764321111122333333322 123479999999999753
No 131
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.87 E-value=2.2e-09 Score=101.31 Aligned_cols=115 Identities=23% Similarity=0.208 Sum_probs=65.1
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcc---eecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKS---TINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va---~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
||+|+|.+||||||||++|++.... ......+.+..............+.++|++|...... ..... +.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~~~~~---~~-- 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYS---QHQFF---LK-- 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHC---TSHHH---HH--
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecc---cccch---hh--
Confidence 7999999999999999999987654 1112222232222222222334588999999843221 00111 22
Q ss_pred HhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccC
Q 036930 549 IKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAA 599 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD 599 (1109)
.+|++++|.+++... +.. -..+++++...-+.....|+|+|.||.|
T Consensus 73 ----~~d~~ilv~D~s~~~s~~~-~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 ----KADAVILVYDLSDPESLEY-LSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp ----HSCEEEEEEECCGHHHHHH-HHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred ----cCcEEEEEEcCCChHHHHH-HHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 279999998776422 110 1223444444432223479999999998
No 132
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.86 E-value=2.3e-08 Score=101.09 Aligned_cols=102 Identities=19% Similarity=0.256 Sum_probs=61.0
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~ 551 (1109)
+|+++|.+|||||||+|+|+|..... .+|. ...+.+. .+|||||+..... ...+.+...+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~----~v~~~~~--~~iDtpG~~~~~~------~~~~~~~~~~~- 63 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA------RKTQ----AVEFNDK--GDIDTPGEYFSHP------RWYHALITTLQ- 63 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC------ccce----EEEECCC--CcccCCccccCCH------HHHHHHHHHHh-
Confidence 79999999999999999999875311 1111 1112222 2699999865321 12222222222
Q ss_pred CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 552 FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 552 ~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++|++|+|++++..... ... ++... + ..+++++|+||+|+.
T Consensus 64 -~ad~il~v~d~~~~~s~-~~~----~~~~~-~--~~~~ii~v~nK~Dl~ 104 (158)
T PRK15467 64 -DVDMLIYVHGANDPESR-LPA----GLLDI-G--VSKRQIAVISKTDMP 104 (158)
T ss_pred -cCCEEEEEEeCCCcccc-cCH----HHHhc-c--CCCCeEEEEEccccC
Confidence 48999999877643211 111 22222 1 136899999999973
No 133
>PRK09866 hypothetical protein; Provisional
Probab=98.86 E-value=7.1e-08 Score=116.13 Aligned_cols=73 Identities=14% Similarity=0.164 Sum_probs=48.3
Q ss_pred EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEec
Q 036930 518 VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTH 597 (1109)
Q Consensus 518 ~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTK 597 (1109)
.+++||||||+...... ...+.+.+ .+. .+|+||||++.+.. ....|..+++.+.+. +. ..|+++|+||
T Consensus 230 ~QIIFVDTPGIhk~~~~-~L~k~M~e----qL~--eADvVLFVVDat~~-~s~~DeeIlk~Lkk~-~K--~~PVILVVNK 298 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQP-HLQKMLNQ----QLA--RASAVLAVLDYTQL-KSISDEEVREAILAV-GQ--SVPLYVLVNK 298 (741)
T ss_pred CCEEEEECCCCCCccch-HHHHHHHH----HHh--hCCEEEEEEeCCCC-CChhHHHHHHHHHhc-CC--CCCEEEEEEc
Confidence 46889999999865321 12333333 344 38999999776542 334477777777654 21 1389999999
Q ss_pred cCCC
Q 036930 598 AASE 601 (1109)
Q Consensus 598 aD~l 601 (1109)
+|..
T Consensus 299 IDl~ 302 (741)
T PRK09866 299 FDQQ 302 (741)
T ss_pred ccCC
Confidence 9985
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.86 E-value=2e-08 Score=100.33 Aligned_cols=116 Identities=18% Similarity=0.207 Sum_probs=71.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
...++|+|+|++|||||||+|.|.+.......+. .+ +......+.+..+.+|||||.... ......
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t-~g---~~~~~i~~~~~~~~~~D~~G~~~~----------~~~~~~ 77 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPT-QG---FNIKTVQSDGFKLNVWDIGGQRAI----------RPYWRN 77 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCC-CC---cceEEEEECCEEEEEEECCCCHHH----------HHHHHH
Confidence 3478999999999999999999999754322221 12 222344567899999999997321 112223
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
++. ++|++++|+++..... -......+...+.. ....|+++|+||+|...
T Consensus 78 ~~~--~~~~ii~v~D~~~~~~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 78 YFE--NTDCLIYVIDSADKKR---LEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred Hhc--CCCEEEEEEeCCCHHH---HHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 333 4799999977654211 01112222222111 12378999999999753
No 135
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.86 E-value=1.3e-08 Score=104.77 Aligned_cols=117 Identities=14% Similarity=0.164 Sum_probs=68.4
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
+|+++|.+|||||||+|.|++... . ..+.+.+.........+++. .+.||||||..... .+ ...++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~---~~~~~ 68 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF-V-ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT-------AL---RDQWI 68 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-C-ccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH-------HH---HHHHH
Confidence 589999999999999999986542 1 12212221122233445554 47889999963211 11 11223
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC-CCCCeEEEEEeccCCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS-SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~-~v~k~vIVVLTKaD~l~ 602 (1109)
+ ++|++|+|.+++....-..-..++..+...... ....|+|+|.||+|+..
T Consensus 69 ~--~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 69 R--EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred H--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 3 489999998776432111112334444443321 13468999999999853
No 136
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.86 E-value=1.5e-08 Score=103.76 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=68.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+++|.+|||||||+|.+++........ .+.+.........+++ ..+.+|||||..... . ....+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~-------~---~~~~~ 69 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK-STIGVDFKIKTVYIENKIIKLQIWDTNGQERFR-------S---LNNSY 69 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC-CceeeEEEEEEEEECCEEEEEEEEECCCcHHHH-------h---hHHHH
Confidence 589999999999999999999765421111 1111222223344554 567899999953211 1 11222
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ ++|++++|.+++....-..-..++..+....+. ..++++|.||+|+..
T Consensus 70 ~~--~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~--~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 70 YR--GAHGYLLVYDVTDQESFENLKFWINEINRYARE--NVIKVIVANKSDLVN 119 (188)
T ss_pred cc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECCCCcc
Confidence 33 489999998776432100111233333333222 368999999999753
No 137
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.86 E-value=2.9e-08 Score=100.09 Aligned_cols=118 Identities=16% Similarity=0.199 Sum_probs=66.6
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEE------------CCEEEEEEeCCCCCCCCcchh
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLV------------HGVKIRIFDTPGLRSPAIGRT 536 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i------------~G~~VtLIDTPGL~ds~~~~~ 536 (1109)
-++|+++|++|||||||+|.+++... . ..+.+... ........+ ....+.||||||...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------ 75 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF-N-PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER------ 75 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-C-ccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH------
Confidence 47999999999999999999987542 1 11111111 111111211 237789999999421
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 537 VNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 537 ~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.......+++ .+|++++|.+++....-..-..++..+.... .....|+++|.||+|+..
T Consensus 76 ----~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 76 ----FRSLTTAFFR--DAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA-YCENPDIVLCGNKADLED 134 (180)
T ss_pred ----HHHHHHHHhC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEeCccchh
Confidence 1111222333 5899999987764211000112233333221 112468999999999854
No 138
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.86 E-value=1.8e-08 Score=111.22 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=72.9
Q ss_pred EEEEEecCCCChhHHHHHHhCCCc-----ceec------CC-----CCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEK-----STIN------AF-----EPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIG 534 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~v-----a~Vs------~i-----~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~ 534 (1109)
+|+++|.+|+|||||+|+|+.... ..+. ++ ..++|. .......+++.++.||||||..+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 589999999999999999973211 1111 11 123333 4456778899999999999986421
Q ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 535 RTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 535 ~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..+ ..++. .+|++++|++... .....+..+++.+... ..|+++++||+|..
T Consensus 79 ----~~~----~~~l~--~aD~ailVVDa~~-g~~~~t~~~~~~~~~~-----~~p~ivviNK~D~~ 129 (270)
T cd01886 79 ----IEV----ERSLR--VLDGAVAVFDAVA-GVEPQTETVWRQADRY-----NVPRIAFVNKMDRT 129 (270)
T ss_pred ----HHH----HHHHH--HcCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 122 23333 2799999977653 2233344566655432 37889999999975
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.85 E-value=1.8e-08 Score=97.94 Aligned_cols=101 Identities=20% Similarity=0.254 Sum_probs=61.8
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~ 551 (1109)
+|+|+|.+|||||||+|+|++.... + ..|.. ..+.+ .+|||||.... .....+.+...++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~-~~t~~-----~~~~~---~~iDt~G~~~~------~~~~~~~~~~~~~- 61 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----Y-KKTQA-----VEYND---GAIDTPGEYVE------NRRLYSALIVTAA- 61 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----c-cccee-----EEEcC---eeecCchhhhh------hHHHHHHHHHHhh-
Confidence 7999999999999999999987531 1 22221 11222 68999997321 1122222222232
Q ss_pred CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 552 FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 552 ~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++|++++|++++...... ...++ ..++ +|+++|+||+|+.+
T Consensus 62 -~ad~vilv~d~~~~~s~~-~~~~~----~~~~----~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 62 -DADVIALVQSATDPESRF-PPGFA----SIFV----KPVIGLVTKIDLAE 102 (142)
T ss_pred -cCCEEEEEecCCCCCcCC-ChhHH----Hhcc----CCeEEEEEeeccCC
Confidence 589999998876433211 22222 2222 48999999999753
No 140
>CHL00071 tufA elongation factor Tu
Probab=98.85 E-value=3.2e-08 Score=114.89 Aligned_cols=118 Identities=12% Similarity=0.044 Sum_probs=75.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceec-------C-------CCCceeE-EEEEEEEECCEEEEEEeCCCCCCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTIN-------A-------FEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs-------~-------i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~ 532 (1109)
+..++|+++|.+++|||||+|+|++......+ . ...++|. +.......++.++.||||||..+
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~-- 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD-- 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH--
Confidence 45689999999999999999999975221100 0 1245554 44445566788999999999632
Q ss_pred cchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 533 IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 533 ~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+..+...+. .+|++++|++... .....+...+..+... | .+++|+|+||+|+..
T Consensus 88 --------~~~~~~~~~~--~~D~~ilVvda~~-g~~~qt~~~~~~~~~~-g---~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 88 --------YVKNMITGAA--QMDGAILVVSAAD-GPMPQTKEHILLAKQV-G---VPNIVVFLNKEDQVD 142 (409)
T ss_pred --------HHHHHHHHHH--hCCEEEEEEECCC-CCcHHHHHHHHHHHHc-C---CCEEEEEEEccCCCC
Confidence 1222222233 4899999977653 2333355566555432 3 234788999999853
No 141
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.85 E-value=2.4e-08 Score=101.37 Aligned_cols=113 Identities=15% Similarity=0.150 Sum_probs=69.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
.++|+++|.+|+|||||+|.|++....... | |.........+.+.++.++||||.... ......++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~---~-t~~~~~~~~~~~~~~~~l~D~~G~~~~----------~~~~~~~~ 80 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTS---P-TIGSNVEEIVYKNIRFLMWDIGGQESL----------RSSWNTYY 80 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcC---C-ccccceEEEEECCeEEEEEECCCCHHH----------HHHHHHHh
Confidence 479999999999999999999865432221 1 222222345567899999999997421 11112233
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC--CCCeEEEEEeccCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS--VWQNAILCLTHAASE 601 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~--v~k~vIVVLTKaD~l 601 (1109)
+ ++|+++||++.+.... -....+.+...+... ...|+++|.||+|+.
T Consensus 81 ~--~~d~vi~V~D~s~~~~---~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~ 129 (174)
T cd04153 81 T--NTDAVILVIDSTDRER---LPLTKEELYKMLAHEDLRKAVLLVLANKQDLK 129 (174)
T ss_pred h--cCCEEEEEEECCCHHH---HHHHHHHHHHHHhchhhcCCCEEEEEECCCCC
Confidence 3 4899999977654211 111222233332211 247999999999974
No 142
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.84 E-value=2.5e-08 Score=103.60 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=68.1
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEEC---CEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVH---GVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~---G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
++|+|+|.+|||||||+|.+++..... .+.+... ........++ ...+.||||||.... ..+ ..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~--~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~-------~~~---~~ 68 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQ--HYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERF-------GGM---TR 68 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhh-------hhh---HH
Confidence 589999999999999999999764211 1212111 1222233444 366889999997321 111 12
Q ss_pred HHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhC--CCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLG--SSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG--~~v~k~vIVVLTKaD~l~ 602 (1109)
.+++ ++|++++|.+++... +.. -..++..+..... .....|+|+|.||+|+..
T Consensus 69 ~~~~--~a~~~ilv~D~t~~~s~~~-~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 69 VYYR--GAVGAIIVFDVTRPSTFEA-VLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred HHhC--CCCEEEEEEECCCHHHHHH-HHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 2333 589999998776422 110 1122233333211 123468999999999853
No 143
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.83 E-value=1.5e-08 Score=102.26 Aligned_cols=113 Identities=14% Similarity=0.191 Sum_probs=67.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee--EEEEEEEEEC--CEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS--SVKVIAGLVH--GVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT--rv~e~~~~i~--G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
++|+++|.+|||||||+|.++..... ..+ ..|. .........+ ...+.+|||||...... +. .
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~---~ 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFE--KKY-VATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-------LR---D 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCC-CCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-------cc---H
Confidence 58999999999999999999854321 111 1122 1222222223 46788999999754221 00 1
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.++ ..+|++++|.+++....-..-..+++.+....+ ..|+++|.||+|+.
T Consensus 68 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~ 117 (166)
T cd00877 68 GYY--IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIK 117 (166)
T ss_pred HHh--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcc
Confidence 112 248999999887642211111234445544433 58999999999985
No 144
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.82 E-value=3.4e-08 Score=99.07 Aligned_cols=112 Identities=14% Similarity=0.145 Sum_probs=67.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK 550 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk 550 (1109)
+||+++|.+|||||||++.+..... . .+.| |+............++.||||||.... ..+ ...+++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~-~--~~~p-t~g~~~~~~~~~~~~~~l~D~~G~~~~-------~~~---~~~~~~ 66 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI-V--TTIP-TIGFNVETVEYKNISFTVWDVGGQDKI-------RPL---WRHYFQ 66 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-c--ccCC-CCCcceEEEEECCEEEEEEECCCCHhH-------HHH---HHHHhc
Confidence 5899999999999999999964332 1 1222 222222234457899999999997321 111 122333
Q ss_pred cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC--CCCeEEEEEeccCCC
Q 036930 551 KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS--VWQNAILCLTHAASE 601 (1109)
Q Consensus 551 ~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~--v~k~vIVVLTKaD~l 601 (1109)
++|+++||.+++.... -..+.+.+.+..... ...|+++|.||.|+.
T Consensus 67 --~ad~~i~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 114 (159)
T cd04150 67 --NTQGLIFVVDSNDRER---IGEAREELQRMLNEDELRDAVLLVFANKQDLP 114 (159)
T ss_pred --CCCEEEEEEeCCCHHH---HHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC
Confidence 4899999987764321 111222333332211 136899999999974
No 145
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.82 E-value=2.4e-08 Score=98.88 Aligned_cols=117 Identities=21% Similarity=0.186 Sum_probs=69.3
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+++|.+|||||||++.++..... ..+.+.+.........++|. .+.||||||..... .+.. .+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~---~~ 69 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-------SMRD---LY 69 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCccccc-------chHH---HH
Confidence 68999999999999999999875432 12212211133334445554 46789999964321 1111 12
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+. .+|++++|.+++....-..-..++..+..... ....|+++|.||+|+..
T Consensus 70 ~~--~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 70 IK--NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLES 120 (163)
T ss_pred Hh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 22 47999999877653210111233344444322 13478999999999753
No 146
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.82 E-value=1.6e-08 Score=104.32 Aligned_cols=114 Identities=18% Similarity=0.236 Sum_probs=73.7
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCccee------------c-----CCCCceeEEEEEEEE--ECCEEEEEEeCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTI------------N-----AFEPATSSVKVIAGL--VHGVKIRIFDTPGLRS 530 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~V------------s-----~i~pgTTrv~e~~~~--i~G~~VtLIDTPGL~d 530 (1109)
-.+|+++|++++|||||+++|++...... . .....|......... ..++.+++|||||..+
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 36899999999999999999985432110 0 001223333445555 7899999999999733
Q ss_pred CCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 531 s~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
....+...+. .+|++++|++.... ........++.+... ..|+|||+||+|..
T Consensus 83 ----------f~~~~~~~~~--~~D~ailvVda~~g-~~~~~~~~l~~~~~~-----~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 83 ----------FIKEMIRGLR--QADIAILVVDANDG-IQPQTEEHLKILREL-----GIPIIVVLNKMDLI 135 (188)
T ss_dssp ----------HHHHHHHHHT--TSSEEEEEEETTTB-STHHHHHHHHHHHHT-----T-SEEEEEETCTSS
T ss_pred ----------eeecccceec--ccccceeeeecccc-ccccccccccccccc-----ccceEEeeeeccch
Confidence 1222223333 48999999876642 333345556655443 36799999999985
No 147
>PTZ00258 GTP-binding protein; Provisional
Probab=98.81 E-value=1.5e-08 Score=117.20 Aligned_cols=91 Identities=23% Similarity=0.248 Sum_probs=65.1
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEEC-----------------CEEEEEEeCCC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVH-----------------GVKIRIFDTPG 527 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~-----------------G~~VtLIDTPG 527 (1109)
.+...++|+|||.||||||||+|+|++... .++++ |+||+ +......+. +.++.++||||
T Consensus 17 ~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~-pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 17 RPGNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENF-PFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred cCCCCcEEEEECCCCCChHHHHHHHhcCcc-cccCC-CCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 346778999999999999999999998774 88887 88885 555555544 23589999999
Q ss_pred CCCCCcc-hhhhHHHHHHHHHHHhcCCCcEEEEEecCC
Q 036930 528 LRSPAIG-RTVNKKTLASIRKSIKKFPPDVVLYVDRLD 564 (1109)
Q Consensus 528 L~ds~~~-~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrld 564 (1109)
|...... .......+. .++ .+|++++|++..
T Consensus 95 Lv~ga~~g~gLg~~fL~----~Ir--~aD~il~VVd~f 126 (390)
T PTZ00258 95 LVKGASEGEGLGNAFLS----HIR--AVDGIYHVVRAF 126 (390)
T ss_pred cCcCCcchhHHHHHHHH----HHH--HCCEEEEEEeCC
Confidence 9865421 112223333 333 389999997653
No 148
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.81 E-value=3.9e-08 Score=102.41 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=68.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCce-eEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT-SSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT-Trv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..++|+|+|++|||||||++.+++.... ..+.+.. .........+.| ..+.||||||..... .+ .
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~---~ 72 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS--GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR-------TI---T 72 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH-------HH---H
Confidence 4589999999999999999999976531 1111111 112223334455 568899999963211 11 1
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .++++++|.+++....-..-..++..+.... ...|++||.||+|+..
T Consensus 73 ~~~~~--~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~ 124 (199)
T cd04110 73 STYYR--GTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHhC--CCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECccccc
Confidence 22333 4799999987764221000112333333322 2468899999999753
No 149
>PLN03110 Rab GTPase; Provisional
Probab=98.81 E-value=4.8e-08 Score=103.47 Aligned_cols=121 Identities=19% Similarity=0.191 Sum_probs=72.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
....++|+++|.+|||||||++.|++..... ................+++ ..+.||||||... ....
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~-~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~----------~~~~ 77 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCL-ESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER----------YRAI 77 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeEEEEEEEEEECCEEEEEEEEECCCcHH----------HHHH
Confidence 3456899999999999999999999865422 1111111122233344555 5788999999522 1111
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...+++ .++++|+|.+++....-..-..++..+..... ...++++|.||+|+..
T Consensus 78 ~~~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 78 TSAYYR--GAVGALLVYDITKRQTFDNVQRWLRELRDHAD--SNIVIMMAGNKSDLNH 131 (216)
T ss_pred HHHHhC--CCCEEEEEEECCChHHHHHHHHHHHHHHHhCC--CCCeEEEEEEChhccc
Confidence 222333 48999999777643211111233444444322 2468999999999743
No 150
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.80 E-value=2.4e-08 Score=100.15 Aligned_cols=114 Identities=23% Similarity=0.244 Sum_probs=67.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEE--CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLV--HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i--~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+||+++|.+|||||||+|++++..... .+ +.|.........+ ...++.+|||||..... .. ....
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~----~~~~ 67 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE--NV-PRVLPEITIPADVTPERVPTTIVDTSSRPQDR------AN----LAAE 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--cC-CCcccceEeeeeecCCeEEEEEEeCCCchhhh------HH----Hhhh
Confidence 489999999999999999998765321 12 2222111122222 35778899999975421 11 1122
Q ss_pred HhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+. .+|++++|++++... +......++..+.... ...|+++|.||+|+.+
T Consensus 68 ~~--~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~pviiv~nK~Dl~~ 117 (166)
T cd01893 68 IR--KANVICLVYSVDRPSTLERIRTKWLPLIRRLG---VKVPIILVGNKSDLRD 117 (166)
T ss_pred cc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccc
Confidence 32 489999997766422 1100012333344332 1479999999999854
No 151
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.80 E-value=2.1e-08 Score=114.98 Aligned_cols=88 Identities=22% Similarity=0.209 Sum_probs=62.6
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-----------------EEEEEEeCCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-----------------VKIRIFDTPGLRSP 531 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-----------------~~VtLIDTPGL~ds 531 (1109)
+++|+|||.||||||||+|+|++.. ..++.+ |+||+ +......+.+ .++.++||||+...
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~-~~v~ny-pftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAG-AEAANY-PFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC-Ceeccc-ccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 4799999999999999999999988 588887 88885 5555555443 25899999999875
Q ss_pred CcchhhhHHHHHHHHHHHhcCCCcEEEEEecCC
Q 036930 532 AIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLD 564 (1109)
Q Consensus 532 ~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrld 564 (1109)
... .+.+-......++ .+|++++|++..
T Consensus 80 a~~---g~glg~~fL~~i~--~aD~li~VVd~f 107 (364)
T PRK09601 80 ASK---GEGLGNQFLANIR--EVDAIVHVVRCF 107 (364)
T ss_pred CCh---HHHHHHHHHHHHH--hCCEEEEEEeCC
Confidence 432 1222222222333 389999997653
No 152
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.80 E-value=5.8e-08 Score=100.01 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=69.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..++|+|+|.+|||||||++.+...... .+.| |+..........+..+.||||||.... .. ....+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~---~~~~-T~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~---~~~~~ 81 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVV---TTIP-TIGFNVETVEYKNLKFTMWDVGGQDKL-------RP---LWRHY 81 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcc---ccCC-ccccceEEEEECCEEEEEEECCCCHhH-------HH---HHHHH
Confidence 3589999999999999999999643221 1212 323222334567899999999997321 11 11223
Q ss_pred HhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCC--CCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSS--VWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~--v~k~vIVVLTKaD~l 601 (1109)
++ ++|++|||++++... +. .+.+.+.+.+... ...|++||.||.|+.
T Consensus 82 ~~--~ad~iI~v~D~t~~~s~~----~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 131 (182)
T PTZ00133 82 YQ--NTNGLIFVVDSNDRERIG----DAREELERMLSEDELRDAVLLVFANKQDLP 131 (182)
T ss_pred hc--CCCEEEEEEeCCCHHHHH----HHHHHHHHHHhCHhhcCCCEEEEEeCCCCC
Confidence 33 489999998776421 11 1222333333221 236899999999974
No 153
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.79 E-value=1.7e-07 Score=99.17 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=68.0
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCce-eEEEEEEEEE-CC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT-SSVKVIAGLV-HG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT-Trv~e~~~~i-~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
++|+|+|.+|||||||+|.|++........ +.+ .........+ ++ ..+.||||||.... .. ...
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~--~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~-------~~---~~~ 70 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVSD--PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERF-------RS---ITR 70 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--ceeceEEEEEEEEECCCCEEEEEEEeCCcchhH-------HH---HHH
Confidence 799999999999999999999865322221 211 1222222233 23 57889999996321 11 112
Q ss_pred HHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+++ .+|++++|.+++... +. .-..++..+...... ...+++||.||+|+..
T Consensus 71 ~~~~--~~d~iilv~D~~~~~Sf~-~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 71 SYYR--NSVGVLLVFDITNRESFE-HVHDWLEEARSHIQP-HRPVFILVGHKCDLES 123 (211)
T ss_pred HHhc--CCcEEEEEEECCCHHHHH-HHHHHHHHHHHhcCC-CCCeEEEEEEcccccc
Confidence 2333 479999998776422 11 112233434333322 2356788999999754
No 154
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.79 E-value=1.2e-07 Score=99.62 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=66.2
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCc-ceecCC-CCceeEEEEEEEEE---------------------------CC----
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEK-STINAF-EPATSSVKVIAGLV---------------------------HG---- 517 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~v-a~Vs~i-~pgTTrv~e~~~~i---------------------------~G---- 517 (1109)
++|+++|+.|+|||||+.+|.+... ...... ...|..+.-....+ .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999987621 100000 01111111001011 03
Q ss_pred --EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEE
Q 036930 518 --VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCL 595 (1109)
Q Consensus 518 --~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVL 595 (1109)
.++.||||||.. .+.......+. .+|++++|++++...........+..+.. .+ .+++|+|+
T Consensus 81 ~~~~i~~iDtPG~~----------~~~~~~~~~~~--~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~---~~~iiivv 144 (203)
T cd01888 81 LVRHVSFVDCPGHE----------ILMATMLSGAA--VMDGALLLIAANEPCPQPQTSEHLAALEI-MG---LKHIIIVQ 144 (203)
T ss_pred cccEEEEEECCChH----------HHHHHHHHhhh--cCCEEEEEEECCCCCCCcchHHHHHHHHH-cC---CCcEEEEE
Confidence 789999999942 12223323232 47999999887653222223444544432 22 25789999
Q ss_pred eccCCC
Q 036930 596 THAASE 601 (1109)
Q Consensus 596 TKaD~l 601 (1109)
||+|+.
T Consensus 145 NK~Dl~ 150 (203)
T cd01888 145 NKIDLV 150 (203)
T ss_pred Echhcc
Confidence 999985
No 155
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.79 E-value=1.4e-08 Score=94.80 Aligned_cols=114 Identities=20% Similarity=0.183 Sum_probs=65.5
Q ss_pred EEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEE--CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc
Q 036930 475 VLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLV--HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 475 LVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i--~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~ 551 (1109)
|+|++|+|||||+|+|++..... ... ..|. ......... .+..+++|||||...... .. ..++.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~-~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~----~~~~~- 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEY-ETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS------LR----RLYYR- 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-ccc-ccchhheeeEEEEECCEEEEEEEEecCChHHHHh------HH----HHHhc-
Confidence 58999999999999999876521 111 1121 122222222 267899999999865321 11 22222
Q ss_pred CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCC
Q 036930 552 FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPP 603 (1109)
Q Consensus 552 ~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~p 603 (1109)
.+|++++|+++....... +......+..........++++|+||+|....
T Consensus 68 -~~~~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~ 117 (157)
T cd00882 68 -GADGIILVYDVTDRESFE-NVKEWLLLILINKEGENIPIILVGNKIDLPEE 117 (157)
T ss_pred -CCCEEEEEEECcCHHHHH-HHHHHHHHHHHhhccCCCcEEEEEeccccccc
Confidence 489999997776532110 11111001111122346899999999998653
No 156
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.79 E-value=1.6e-08 Score=112.17 Aligned_cols=84 Identities=23% Similarity=0.204 Sum_probs=59.6
Q ss_pred EEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCE-----------------EEEEEeCCCCCCCCcc
Q 036930 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGV-----------------KIRIFDTPGLRSPAIG 534 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~-----------------~VtLIDTPGL~ds~~~ 534 (1109)
|+|||.||||||||+|+|++... .++.+ |+||. .......+.+. +|.++||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~-pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANY-PFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccc-cccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 57999999999999999999987 78887 88875 55555555443 5999999999875421
Q ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEecC
Q 036930 535 RTVNKKTLASIRKSIKKFPPDVVLYVDRL 563 (1109)
Q Consensus 535 ~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrl 563 (1109)
.+.+-......++ .+|++++|++.
T Consensus 79 ---~~glg~~fL~~i~--~~D~li~VV~~ 102 (274)
T cd01900 79 ---GEGLGNKFLSHIR--EVDAIAHVVRC 102 (274)
T ss_pred ---hhHHHHHHHHHHH--hCCEEEEEEeC
Confidence 1222222222333 38999999764
No 157
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.78 E-value=7.3e-08 Score=98.27 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=69.7
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
.++|+++|.+|||||||++.+..... . .+.| |+..........+..+.+|||||.... ..+ ...++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~--~-~~~~-t~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~---~~~~~ 78 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGES--V-TTIP-TIGFNVETVTYKNISFTVWDVGGQDKI-------RPL---WRHYY 78 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCC--C-CcCC-ccccceEEEEECCEEEEEEECCCChhh-------HHH---HHHHh
Confidence 58999999999999999999963321 1 2223 333222234467889999999997431 111 22233
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC--CCCeEEEEEeccCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS--VWQNAILCLTHAASE 601 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~--v~k~vIVVLTKaD~l 601 (1109)
+ ++|+++||++++.... -..+.+.+...+... ...|++||.||+|+.
T Consensus 79 ~--~ad~ii~v~D~t~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~ 127 (175)
T smart00177 79 T--NTQGLIFVVDSNDRDR---IDEAREELHRMLNEDELRDAVILVFANKQDLP 127 (175)
T ss_pred C--CCCEEEEEEECCCHHH---HHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcc
Confidence 3 4899999987764221 112233333333221 136899999999974
No 158
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.77 E-value=5e-08 Score=98.56 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=67.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
.||+|+|.+|||||||+|.+++... +..+.|.+.........+.+ ..+.+|||||..... ... ..+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~---~~~ 69 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYS-------ILP---QKY 69 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhH-------HHH---HHH
Confidence 5899999999999999999997653 22222322111122333444 567899999974321 111 112
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.. ..|++++|.+++....-..-..++..+.+..+ ....|+|+|.||+|...
T Consensus 70 ~~--~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 70 SI--GIHGYILVYSVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHT 120 (180)
T ss_pred Hh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhh
Confidence 22 37888888766642211111223344444332 22468999999999853
No 159
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.77 E-value=1.1e-08 Score=106.05 Aligned_cols=58 Identities=28% Similarity=0.533 Sum_probs=48.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGL 528 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL 528 (1109)
....++|+++|.||||||||||+|++...+.++.. |+||+ .+.+. + +.++.|+||||+
T Consensus 114 ~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~--~-~~~~~l~DtPGi 172 (172)
T cd04178 114 IKTSITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVH--L-DKKVKLLDSPGI 172 (172)
T ss_pred cccCcEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEE--e-CCCEEEEECcCC
Confidence 45568999999999999999999999999999986 88887 33333 2 356899999996
No 160
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.77 E-value=3.1e-08 Score=105.46 Aligned_cols=117 Identities=15% Similarity=0.129 Sum_probs=67.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCC-CceeEEEEEEEEEC--CEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFE-PATSSVKVIAGLVH--GVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~-pgTTrv~e~~~~i~--G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
++|+|+|.+|||||||+|.+++.... ...+. ++..........++ ...+.+|||||... .+.. .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~---------~~~~---~ 67 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM---------WTED---S 67 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch---------HHHh---H
Confidence 58999999999999999999754432 11211 11112222233343 46789999999851 0101 1
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++. ..+|++++|.+++....-..-..++..+... ......|+|+|.||+|+..
T Consensus 68 ~~~-~~ad~iilV~d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~ 120 (221)
T cd04148 68 CMQ-YQGDAFVVVYSVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLAR 120 (221)
T ss_pred Hhh-cCCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhccc
Confidence 221 1589999998776532111112233434332 1123579999999999754
No 161
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.77 E-value=7.2e-08 Score=97.78 Aligned_cols=117 Identities=16% Similarity=0.099 Sum_probs=70.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
+..++|+|+|.+|||||||+|.+++... .+..+.|.+. ........++| ..+.++||+|-..... +
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f-~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~--- 70 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSF-SLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL-------L--- 70 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCC-CcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc-------c---
Confidence 3468999999999999999999998653 2233323221 12223344566 5678999998754221 0
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
...++. .+|++|+|++++.... ...+..++. .+......|+++|.||+|+.
T Consensus 71 ~~~~~~--~~d~~llv~d~~~~~s---~~~~~~~~~-~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 71 NDAELA--ACDVACLVYDSSDPKS---FSYCAEVYK-KYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred chhhhh--cCCEEEEEEeCCCHHH---HHHHHHHHH-HhccCCCCeEEEEEEccccc
Confidence 011122 4899999977654211 112223332 22222257999999999974
No 162
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.77 E-value=7.2e-08 Score=98.01 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=67.6
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.+|+++|.+|||||||+|.+++... . ..+.|... ........++| .++.||||||..... .+ ...
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~---~~~ 68 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVF-D-KNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFK-------CI---AST 68 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHH-------hh---HHH
Confidence 3799999999999999999997642 1 22222221 12223344455 568899999973211 11 112
Q ss_pred HHhcCCCcEEEEEecCCCC-CCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTH-TRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~-t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+++ ++|++++|.+++.. ++. ....++..+.+..... ..++++|.||+|+..
T Consensus 69 ~~~--~ad~~ilv~d~~~~~s~~-~~~~~~~~~~~~~~~~-~~~iilVgnK~Dl~~ 120 (170)
T cd04108 69 YYR--GAQAIIIVFDLTDVASLE-HTRQWLEDALKENDPS-SVLLFLVGTKKDLSS 120 (170)
T ss_pred Hhc--CCCEEEEEEECcCHHHHH-HHHHHHHHHHHhcCCC-CCeEEEEEEChhcCc
Confidence 222 58999999877542 111 1122333333221111 246899999999743
No 163
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.77 E-value=1.1e-07 Score=103.11 Aligned_cols=112 Identities=17% Similarity=0.148 Sum_probs=70.8
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcce--ecCCCC--------------c-eeEEEEEEEEECCEEEEEEeCCCCCCCCcc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKST--INAFEP--------------A-TSSVKVIAGLVHGVKIRIFDTPGLRSPAIG 534 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~--Vs~i~p--------------g-TTrv~e~~~~i~G~~VtLIDTPGL~ds~~~ 534 (1109)
+|+++|.+|+|||||+|+|+...... .+.... + |.........+++.++.+|||||..+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 58999999999999999998643221 111111 1 1113345567889999999999996521
Q ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 535 RTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 535 ~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..+. .+++ .+|++++|++.... .......+++.+... ..|+++|+||+|..
T Consensus 79 ----~~~~----~~l~--~aD~~IlVvd~~~g-~~~~~~~~~~~~~~~-----~~P~iivvNK~D~~ 129 (237)
T cd04168 79 ----AEVE----RSLS--VLDGAILVISAVEG-VQAQTRILWRLLRKL-----NIPTIIFVNKIDRA 129 (237)
T ss_pred ----HHHH----HHHH--HhCeEEEEEeCCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECcccc
Confidence 1222 2333 37999999776542 222233444544332 37889999999975
No 164
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.77 E-value=8.9e-08 Score=104.62 Aligned_cols=112 Identities=21% Similarity=0.281 Sum_probs=69.5
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcce--ecCCCCce---------------eEEEEEEEEECCEEEEEEeCCCCCCCCcc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKST--INAFEPAT---------------SSVKVIAGLVHGVKIRIFDTPGLRSPAIG 534 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~--Vs~i~pgT---------------Trv~e~~~~i~G~~VtLIDTPGL~ds~~~ 534 (1109)
+|+|+|.+|+|||||+|+|++..... .+....++ .........+++..+.||||||..+..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~-- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV-- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH--
Confidence 58999999999999999998643211 11111111 112234566789999999999985411
Q ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 535 RTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 535 ~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..+. .++. .+|++++|++.+... ......+++.+... ..|.++|+||+|..
T Consensus 79 ----~~~~----~~l~--~aD~~i~Vvd~~~g~-~~~~~~~~~~~~~~-----~~p~iivvNK~D~~ 129 (268)
T cd04170 79 ----GETR----AALR--AADAALVVVSAQSGV-EVGTEKLWEFADEA-----GIPRIIFINKMDRE 129 (268)
T ss_pred ----HHHH----HHHH--HCCEEEEEEeCCCCC-CHHHHHHHHHHHHc-----CCCEEEEEECCccC
Confidence 1222 2233 379999997766432 11223444443322 36899999999974
No 165
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.77 E-value=3.9e-08 Score=98.60 Aligned_cols=117 Identities=21% Similarity=0.181 Sum_probs=68.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+++|.+|||||||+|++++... . ..+.+.+.........+++ .++.+|||||..... .+ ...+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~---~~~~ 69 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF-I-ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFT-------AM---RELY 69 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-C-cccCCcchheEEEEEEECCEEEEEEEEeCCCcccch-------hh---hHHH
Confidence 6899999999999999999996653 1 2221222112223334444 577899999975421 11 1112
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ ..+.+++|.+++....-.....+...+...+. ....|+++|.||.|...
T Consensus 70 ~~--~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~D~~~ 120 (168)
T cd04177 70 IK--SGQGFLLVYSVTSEASLNELGELREQVLRIKD-SDNVPMVLVGNKADLED 120 (168)
T ss_pred Hh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CCCCCEEEEEEChhccc
Confidence 22 37888888777643211111223344443332 22478999999999754
No 166
>PTZ00369 Ras-like protein; Provisional
Probab=98.77 E-value=3.8e-08 Score=101.34 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=68.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+++|.+|||||||++.+++.... ..+.|.+.........+++ ..+.+|||||..+.. .+ ...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~l---~~~ 72 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYS-------AM---RDQ 72 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccch-------hh---HHH
Confidence 489999999999999999999976432 1221211112223334454 457789999975422 11 111
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+++ ..|++++|.+++....-..-..++..+..... ....|+++|.||+|+.
T Consensus 73 ~~~--~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 73 YMR--TGQGFLCVYSITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLD 123 (189)
T ss_pred Hhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 222 48999999877643211111223333433322 1246899999999974
No 167
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.75 E-value=4.9e-08 Score=101.43 Aligned_cols=115 Identities=20% Similarity=0.204 Sum_probs=69.4
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
||+++|.+|||||||+|.+++.... ..+ ..|+. .......+.+ ..+.+|||||..... .+. ..+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~-~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-------~~~---~~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKY-RRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP-------AMR---KLS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccC-CCchhhheeEEEEECCEEEEEEEEECCCchhhh-------HHH---HHH
Confidence 6899999999999999999976532 122 22322 2333455666 678899999975421 111 112
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+. .+|++++|++++....-.....++..+..... ....|+|+|.||+|+..
T Consensus 68 ~~--~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 68 IQ--NSDAFALVYAVDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLE 118 (198)
T ss_pred hh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccc
Confidence 22 48999999877542110001122333433322 22479999999999754
No 168
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=98.74 E-value=1.2e-07 Score=94.92 Aligned_cols=116 Identities=18% Similarity=0.255 Sum_probs=68.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
++|+++|++|||||||++.+++.... . .+.+... .+......+++ ..+.||||||..... .. ...
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-------~~---~~~ 68 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFH-S-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQ-------TI---TKQ 68 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-C-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHH-------hh---HHH
Confidence 58999999999999999999876532 1 1112211 12233445555 567899999963311 11 122
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|.+++....-..-..+++.+.... ....++++|.||.|+..
T Consensus 69 ~~~--~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 69 YYR--RAQGIFLVYDISSERSYQHIMKWVSDVDEYA--PEGVQKILIGNKADEEQ 119 (161)
T ss_pred Hhc--CCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccc
Confidence 232 4899999988775321111122333333321 12468999999999753
No 169
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=98.74 E-value=9.3e-08 Score=96.53 Aligned_cols=111 Identities=17% Similarity=0.209 Sum_probs=67.3
Q ss_pred EEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcC
Q 036930 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKF 552 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~ 552 (1109)
|+++|.+|||||||++.+++... . ..+.| |...........+.++.+|||||-.... .+. ..+++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~-~-~~~~p-t~g~~~~~i~~~~~~l~i~Dt~G~~~~~-------~~~---~~~~~-- 66 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERS-L-ESVVP-TTGFNSVAIPTQDAIMELLEIGGSQNLR-------KYW---KRYLS-- 66 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCC-c-ccccc-cCCcceEEEeeCCeEEEEEECCCCcchh-------HHH---HHHHh--
Confidence 79999999999999999997642 1 12212 2122122344567899999999974321 111 12232
Q ss_pred CCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 553 PPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 553 gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++|+++||++.+.... ...+..++.+........|+++|.||.|+.
T Consensus 67 ~ad~ii~V~D~t~~~s---~~~~~~~l~~~~~~~~~~piilv~NK~Dl~ 112 (164)
T cd04162 67 GSQGLIFVVDSADSER---LPLARQELHQLLQHPPDLPLVVLANKQDLP 112 (164)
T ss_pred hCCEEEEEEECCCHHH---HHHHHHHHHHHHhCCCCCcEEEEEeCcCCc
Confidence 4899999977654221 111222333332222357999999999974
No 170
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.74 E-value=5.6e-08 Score=98.93 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=65.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC---CEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH---GVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~---G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
++|+|+|.+|||||||+|.+++... . ..+.+.+........... ...+.+|||||..... .+ ...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~-~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~-------~~---~~~ 68 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKF-P-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYD-------RL---RPL 68 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcC-C-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHH-------HH---HHH
Confidence 5899999999999999999997653 2 222122212111122232 2568899999953210 11 111
Q ss_pred HHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ .++|++++|.+++... +......++..+.. +. ...|+|+|.||+|+..
T Consensus 69 ~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~-~~--~~~piilv~nK~Dl~~ 119 (187)
T cd04132 69 SY--PDVDVLLICYAVDNPTSLDNVEDKWFPEVNH-FC--PGTPIMLVGLKTDLRK 119 (187)
T ss_pred hC--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHH-hC--CCCCEEEEEeChhhhh
Confidence 22 2589999998876422 11000012222322 11 2468999999999754
No 171
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.74 E-value=2.5e-08 Score=99.80 Aligned_cols=113 Identities=18% Similarity=0.131 Sum_probs=67.6
Q ss_pred EEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh
Q 036930 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK 550 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk 550 (1109)
|+|+|.+|||||||+|.+++... .. .+.+.+.........+++. .+.+|||||..... .+. ..++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~---~~~~- 67 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF-PE-DYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYD-------RLR---PLSY- 67 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCC-CC-CCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccc-------hhc---hhhc-
Confidence 68999999999999999998653 21 2222222222223345554 58899999974321 010 1112
Q ss_pred cCCCcEEEEEecCCCC-CCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 551 KFPPDVVLYVDRLDTH-TRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 551 ~~gpDVVLLVvrlds~-t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..+|++|+|.+++.. ++......++..+.... ...|+|+|.||+|+..
T Consensus 68 -~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 116 (174)
T smart00174 68 -PDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLRE 116 (174)
T ss_pred -CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhh
Confidence 258999999887642 12110012344444432 2579999999999854
No 172
>PLN03108 Rab family protein; Provisional
Probab=98.73 E-value=6.6e-08 Score=101.88 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=68.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
.-++|+|+|.+|||||||+|.|++...........+ .........+++ ..+.+|||||.... ..+ ..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~-~~~~~~~i~~~~~~i~l~l~Dt~G~~~~-------~~~---~~ 73 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-VEFGARMITIDNKPIKLQIWDTAGQESF-------RSI---TR 73 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc-ceEEEEEEEECCEEEEEEEEeCCCcHHH-------HHH---HH
Confidence 347999999999999999999997643222111111 112222344555 45779999996321 111 12
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|.+++....-..-..++..+..... ...|+++|.||+|+..
T Consensus 74 ~~~~--~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~--~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 74 SYYR--GAAGALLVYDITRRETFNHLASWLEDARQHAN--ANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHhc--cCCEEEEEEECCcHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence 2232 48999999877643211101122333333322 2468999999999753
No 173
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.73 E-value=1.9e-07 Score=102.92 Aligned_cols=112 Identities=13% Similarity=0.142 Sum_probs=69.2
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcce---------------ecCCCC------ceeEEEEEEEEECCEEEEEEeCCCCCC
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKST---------------INAFEP------ATSSVKVIAGLVHGVKIRIFDTPGLRS 530 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~---------------Vs~i~p------gTTrv~e~~~~i~G~~VtLIDTPGL~d 530 (1109)
+|+|+|.+|+|||||+|+|+...... +.++.+ .|-........+++.++.||||||..+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 79999999999999999998542221 111111 011123446678899999999999854
Q ss_pred CCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 531 s~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.. .... ..++ .+|++++|++.... .......+++.... . ..|+++++||+|..
T Consensus 84 f~------~~~~----~~l~--~aD~~IlVvda~~g-~~~~~~~i~~~~~~-~----~~P~iivvNK~D~~ 136 (267)
T cd04169 84 FS------EDTY----RTLT--AVDSAVMVIDAAKG-VEPQTRKLFEVCRL-R----GIPIITFINKLDRE 136 (267)
T ss_pred HH------HHHH----HHHH--HCCEEEEEEECCCC-ccHHHHHHHHHHHh-c----CCCEEEEEECCccC
Confidence 21 1122 2233 37999999776532 22222234433322 1 36899999999974
No 174
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.72 E-value=1.7e-07 Score=96.54 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=70.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..++|+++|..|||||||++.+....... . ..|..+........+..+.+|||||-.. ... ....+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~---~-~pt~g~~~~~~~~~~~~~~i~D~~Gq~~-------~~~---~~~~~ 81 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVT---T-IPTIGFNVETVEYKNISFTVWDVGGQDK-------IRP---LWRHY 81 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCcc---c-cCCcceeEEEEEECCEEEEEEECCCCHH-------HHH---HHHHH
Confidence 34799999999999999999997533211 1 1222222234556789999999999521 111 11223
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC--CCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS--VWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~--v~k~vIVVLTKaD~l 601 (1109)
++ ++|+++||++++.... -..+...+...+... ...|++||.||.|+.
T Consensus 82 ~~--~a~~iI~V~D~s~~~s---~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~ 131 (181)
T PLN00223 82 FQ--NTQGLIFVVDSNDRDR---VVEARDELHRMLNEDELRDAVLLVFANKQDLP 131 (181)
T ss_pred hc--cCCEEEEEEeCCcHHH---HHHHHHHHHHHhcCHhhCCCCEEEEEECCCCC
Confidence 33 4899999977664221 112233344333211 246899999999974
No 175
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.71 E-value=7e-08 Score=96.60 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=67.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+++|.+|+|||||+|.+++.... ..+.+.+.........+++. .+.+|||||...... ++.
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~- 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-----------LRP- 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccc-----------ccc-
Confidence 58999999999999999999976531 22212222222333445554 467999999754221 011
Q ss_pred HhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
......|++++|.+++... +......++..+... ....|+++|.||+|+.
T Consensus 67 ~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~---~~~~piivv~nK~Dl~ 117 (174)
T cd04135 67 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY---APNVPYLLVGTQIDLR 117 (174)
T ss_pred ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCEEEEeEchhhh
Confidence 0112479999997766432 111011233334332 2347899999999974
No 176
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=98.70 E-value=1.4e-07 Score=95.99 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=69.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+++|.+|||||||++.+.+.... ..+.|.+.........+++ ..+.||||||..... .+ ...
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~l---~~~ 69 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFT-------AM---RDQ 69 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhH-------HH---hHH
Confidence 379999999999999999999865431 1221222122233345666 557899999974311 11 112
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++. .+|++++|.+++....-..-..+.+.+.... .....|+|+|.||+|+.
T Consensus 70 ~~~--~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~-~~~~~piilvgNK~Dl~ 120 (172)
T cd04141 70 YMR--CGEGFIICYSVTDRHSFQEASEFKKLITRVR-LTEDIPLVLVGNKVDLE 120 (172)
T ss_pred Hhh--cCCEEEEEEECCchhHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhhh
Confidence 232 4799999988765321110112233343321 12347999999999974
No 177
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.70 E-value=6.6e-08 Score=102.76 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=72.4
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcce------------------------ecC-----CCCceeE-EEEEEEEECCEEEE
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKST------------------------INA-----FEPATSS-VKVIAGLVHGVKIR 521 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~------------------------Vs~-----i~pgTTr-v~e~~~~i~G~~Vt 521 (1109)
+|+++|..++|||||+.+|+...... +.+ ...++|+ .......+++.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999996321100 111 1245555 55667778999999
Q ss_pred EEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCC------CCCCCcHHHHHHHHhhhCCCCCCeEEEEE
Q 036930 522 IFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTH------TRDHNDLPLLKSLTSSLGSSVWQNAILCL 595 (1109)
Q Consensus 522 LIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~------t~d~eD~~lLk~I~e~FG~~v~k~vIVVL 595 (1109)
||||||..+. ...+. ..+. .+|++++|++.... .........+... ..++ .+++|||+
T Consensus 81 liDtpG~~~~------~~~~~----~~~~--~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~iiivv 144 (219)
T cd01883 81 ILDAPGHRDF------VPNMI----TGAS--QADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLG---VKQLIVAV 144 (219)
T ss_pred EEECCChHHH------HHHHH----HHhh--hCCEEEEEEECCCCccccccccccchHHHHHHH-HHcC---CCeEEEEE
Confidence 9999997431 11222 2222 38999999877652 1222233333333 2222 36899999
Q ss_pred eccCCCC
Q 036930 596 THAASEP 602 (1109)
Q Consensus 596 TKaD~l~ 602 (1109)
||+|+..
T Consensus 145 NK~Dl~~ 151 (219)
T cd01883 145 NKMDDVT 151 (219)
T ss_pred Ecccccc
Confidence 9999864
No 178
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=98.69 E-value=1.1e-07 Score=103.62 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=70.3
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
++|+|+|.+|||||||+|.+++... .. .+ ..|+. .......++| ..+.||||+|..... .+ .. .
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f-~~-~y-~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~-------~~-~~--~ 67 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF-EE-QY-TPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFP-------AM-RR--L 67 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCC-CC-CC-CCChhHhEEEEEEECCEEEEEEEEECCCChhhh-------HH-HH--H
Confidence 4899999999999999999986542 21 22 22322 3333445666 567899999974321 11 11 1
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhh-------CCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSL-------GSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~F-------G~~v~k~vIVVLTKaD~l~ 602 (1109)
++ ..+|++|+|.+++....-..-..+++.|.... ......|+|+|.||+|+..
T Consensus 68 ~~--~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 68 SI--LTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred Hh--ccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 12 24899999988875321011123344443321 1123479999999999854
No 179
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.68 E-value=3.9e-07 Score=106.45 Aligned_cols=123 Identities=14% Similarity=0.112 Sum_probs=70.1
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCcc-----eecCCCCceeEEE---------------EE-----------EEE
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKS-----TINAFEPATSSVK---------------VI-----------AGL 514 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~va-----~Vs~i~pgTTrv~---------------e~-----------~~~ 514 (1109)
.+..+-+|+|+|++|+|||||++.|+++... .++-+...|.++. .. ...
T Consensus 187 ~~~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~ 266 (420)
T PRK14721 187 IIEQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE 266 (420)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH
Confidence 4456778999999999999999999875211 1111111111100 00 011
Q ss_pred ECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEE
Q 036930 515 VHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILC 594 (1109)
Q Consensus 515 i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVV 594 (1109)
..+..+++|||+|+.... ...+..+..+.....++-+++|++.+.. ...+..+...|.......+ +
T Consensus 267 l~~~d~VLIDTaGrsqrd------~~~~~~l~~l~~~~~~~~~~LVl~at~~------~~~~~~~~~~f~~~~~~~~--I 332 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQRD------QMLAEQIAMLSQCGTQVKHLLLLNATSS------GDTLDEVISAYQGHGIHGC--I 332 (420)
T ss_pred hcCCCEEEecCCCCCcch------HHHHHHHHHHhccCCCceEEEEEcCCCC------HHHHHHHHHHhcCCCCCEE--E
Confidence 244678999999987643 1234444443222235667777655432 2345566666654333444 4
Q ss_pred EeccCCCC
Q 036930 595 LTHAASEP 602 (1109)
Q Consensus 595 LTKaD~l~ 602 (1109)
|||.|...
T Consensus 333 ~TKlDEt~ 340 (420)
T PRK14721 333 ITKVDEAA 340 (420)
T ss_pred EEeeeCCC
Confidence 99999864
No 180
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=98.67 E-value=1.2e-07 Score=96.88 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=70.0
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+||+++|.+|||||||++.+.... + ...+.|.+.........+++ ..+.||||||..... .+. ..+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~-f-~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~---~~~ 69 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNK-F-PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD-------RLR---PLS 69 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC-C-CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchh-------hhh---hhh
Confidence 689999999999999999999654 2 22332332222222345666 567899999985421 111 112
Q ss_pred HhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ .+|++++|.+++... +..-...++..+.... ...|+|+|.||+|+..
T Consensus 70 ~~--~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~ 119 (175)
T cd01874 70 YP--QTDVFLVCFSVVSPSSFENVKEKWVPEITHHC---PKTPFLLVGTQIDLRD 119 (175)
T ss_pred cc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEECHhhhh
Confidence 22 489999998876532 2110012333443322 2479999999999743
No 181
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=98.67 E-value=7.1e-08 Score=97.35 Aligned_cols=114 Identities=19% Similarity=0.160 Sum_probs=69.1
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
++|+++|.+|+|||||++++++.. + ...+ ..|. ........+++ ..+.||||||...... + ...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~-~-~~~~-~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~---~~~ 67 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNG-Y-PTEY-VPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK-------L---RPL 67 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-C-CCCC-CCceeeeeeEEEEECCEEEEEEEEECCCChhhcc-------c---ccc
Confidence 589999999999999999998643 2 2233 2232 23333445555 5678899999843211 0 011
Q ss_pred HHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+++ ++|++++|.+++... +......++..+.... ...|+++|.||+|+..
T Consensus 68 ~~~--~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 118 (173)
T cd04130 68 CYP--DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN---PKAPIILVGTQADLRT 118 (173)
T ss_pred ccC--CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhhcc
Confidence 222 589999998776432 2110112334444321 2378999999999854
No 182
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.67 E-value=4.6e-07 Score=109.90 Aligned_cols=115 Identities=17% Similarity=0.152 Sum_probs=72.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCccee-cCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTI-NAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~V-s~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+.|+++|.+|+|||||+|+|+|...... .....++|. +......+++..+.||||||... ........
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~----------f~~~~~~g 70 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEK----------FISNAIAG 70 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHH----------HHHHHHhh
Confidence 4799999999999999999998642111 111234443 44455667789999999999621 11112122
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+ .++|++++|++++.. ........+..+. .++ .+++|||+||+|+..
T Consensus 71 ~--~~aD~aILVVDa~~G-~~~qT~ehl~il~-~lg---i~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 71 G--GGIDAALLVVDADEG-VMTQTGEHLAVLD-LLG---IPHTIVVITKADRVN 117 (581)
T ss_pred h--ccCCEEEEEEECCCC-CcHHHHHHHHHHH-HcC---CCeEEEEEECCCCCC
Confidence 2 258999999887642 1122333344332 233 245999999999853
No 183
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.67 E-value=2.3e-07 Score=94.12 Aligned_cols=100 Identities=21% Similarity=0.285 Sum_probs=61.5
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~ 551 (1109)
||+|||++|+|||||+++|.|... .+ .-|..+ .+. + .+|||||=.- .+..+.+.+....
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~----~~-~KTq~i-~~~----~---~~IDTPGEyi------E~~~~y~aLi~ta-- 61 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI----RY-KKTQAI-EYY----D---NTIDTPGEYI------ENPRFYHALIVTA-- 61 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC----Cc-Ccccee-Eec----c---cEEECChhhe------eCHHHHHHHHHHH--
Confidence 799999999999999999999654 11 122222 111 1 3599999543 1223333332222
Q ss_pred CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 552 FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 552 ~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..+|+|++|.+.+..... +-..|...+.+|+|-|+||+|+.
T Consensus 62 ~dad~V~ll~dat~~~~~---------~pP~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 62 QDADVVLLLQDATEPRSV---------FPPGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred hhCCEEEEEecCCCCCcc---------CCchhhcccCCCEEEEEECccCc
Confidence 248999999877653210 01112222348999999999986
No 184
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=98.66 E-value=1.2e-07 Score=100.99 Aligned_cols=117 Identities=12% Similarity=0.121 Sum_probs=68.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCc-ceecCCCCceeEEEEEEEEEC--CEEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEK-STINAFEPATSSVKVIAGLVH--GVKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~v-a~Vs~i~pgTTrv~e~~~~i~--G~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
...++|+++|.+|||||||++.++.... ..... ..+.+ +.......+ ...+.+|||||..... .+.
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~-tig~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~-- 79 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-TIGVE-VHPLDFFTNCGKIRFYCWDTAGQEKFG-------GLR-- 79 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCC-cccee-EEEEEEEECCeEEEEEEEECCCchhhh-------hhh--
Confidence 4568999999999999999999765432 11111 11111 222222233 3688999999974421 111
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..+.+ .+|++|+|.+++....-..-..+++.|.... ...|+++|.||+|+.
T Consensus 80 -~~~~~--~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~---~~~piilvgNK~Dl~ 130 (219)
T PLN03071 80 -DGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVK 130 (219)
T ss_pred -HHHcc--cccEEEEEEeCCCHHHHHHHHHHHHHHHHhC---CCCcEEEEEEchhhh
Confidence 11222 4799999987775321111123344444332 247999999999974
No 185
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.66 E-value=1.5e-07 Score=116.05 Aligned_cols=114 Identities=16% Similarity=0.092 Sum_probs=75.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcce-----ecCC-----------CCceeE-EEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKST-----INAF-----------EPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~-----Vs~i-----------~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
.+|+|+|.+|+|||||+|+|+...... +... ..++|. .......+++.++.||||||+.+..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~- 89 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT- 89 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh-
Confidence 489999999999999999997432211 1110 123443 4566778899999999999997622
Q ss_pred chhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 534 GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 534 ~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..+. ..+. ..|++++|++... .....+..+++.+... ..|+++|+||+|+..
T Consensus 90 -----~~~~----~~l~--~~D~~ilVvda~~-g~~~~~~~~~~~~~~~-----~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 90 -----VEVE----RSLR--VLDGAVAVLDAVG-GVQPQSETVWRQANRY-----EVPRIAFVNKMDKTG 141 (689)
T ss_pred -----HHHH----HHHH--HhCEEEEEEeCCC-CCChhHHHHHHHHHHc-----CCCEEEEEECCCCCC
Confidence 1222 2233 2799999977654 2233345566655433 378899999999863
No 186
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.64 E-value=2.7e-07 Score=97.32 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=66.3
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEE--ECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGL--VHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~--i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
+|+|+|++|+|||||++.|.+..... .+ +.++. ....... ..+..+.||||||.... ...+..+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~--t~-~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~----------~~~~~~~ 68 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRS--TV-TSIEPNVATFILNSEGKGKKFRLVDVPGHPKL----------RDKLLET 68 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCC--cc-CcEeecceEEEeecCCCCceEEEEECCCCHHH----------HHHHHHH
Confidence 68999999999999999999764311 11 11211 1111111 23678999999997431 1112223
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhC----CCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLG----SSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG----~~v~k~vIVVLTKaD~l~ 602 (1109)
++.. +++++||++..... .....+...+...+. .....|++||.||+|+..
T Consensus 69 ~~~~-~~~vV~VvD~~~~~--~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 69 LKNS-AKGIVFVVDSATFQ--KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred Hhcc-CCEEEEEEECccch--hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 3321 49999997766531 111222233322221 112479999999999864
No 187
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.64 E-value=8.4e-08 Score=106.47 Aligned_cols=64 Identities=23% Similarity=0.421 Sum_probs=51.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
....++|+|+|.|||||||+||+|++...+.++.. |+||+-.. ...+ +..+.||||||+..+..
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~-~g~T~~~~-~~~~-~~~~~l~DtPGi~~~~~ 181 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNR-PGVTKAQQ-WIKL-GKGLELLDTPGILWPKL 181 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCccccCCC-CCeEEEEE-EEEe-CCcEEEEECCCcCCCCC
Confidence 34678999999999999999999999998888886 88887322 2222 45689999999987653
No 188
>PLN03127 Elongation factor Tu; Provisional
Probab=98.64 E-value=2.6e-07 Score=108.81 Aligned_cols=117 Identities=12% Similarity=0.040 Sum_probs=75.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC------Ccceec---C-----CCCceeE-EEEEEEEECCEEEEEEeCCCCCCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE------EKSTIN---A-----FEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~------~va~Vs---~-----i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~ 532 (1109)
+..++|+++|..++|||||+++|++. ...... + ...++|. +.....+.++.+++||||||+.+
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc--
Confidence 45689999999999999999999732 211110 0 1245554 55556666789999999999853
Q ss_pred cchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 533 IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 533 ~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
....+.. .+. .+|++++|++.+. .....+...+..+... + .+.+|+|+||+|+.
T Consensus 137 ----f~~~~~~----g~~--~aD~allVVda~~-g~~~qt~e~l~~~~~~-g---ip~iIvviNKiDlv 190 (447)
T PLN03127 137 ----YVKNMIT----GAA--QMDGGILVVSAPD-GPMPQTKEHILLARQV-G---VPSLVVFLNKVDVV 190 (447)
T ss_pred ----hHHHHHH----HHh--hCCEEEEEEECCC-CCchhHHHHHHHHHHc-C---CCeEEEEEEeeccC
Confidence 1112221 222 3899999987653 2333455666655543 3 23367899999975
No 189
>PRK00007 elongation factor G; Reviewed
Probab=98.64 E-value=1.6e-07 Score=115.83 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=76.7
Q ss_pred cEEEEEecCCCChhHHHHHHh---CCCcc--eecC-----------CCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 471 LNILVLGKTGVGKSATINSIF---GEEKS--TINA-----------FEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLL---G~~va--~Vs~-----------i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
.+|+|+|++|+|||||+|+|+ |.... .+.. ...++|. .......+.+.++.||||||+.+..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~- 89 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT- 89 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH-
Confidence 489999999999999999997 32111 1111 1234444 4456677899999999999975411
Q ss_pred chhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 534 GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 534 ~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++.+. +. .+|++++|++... .....+..++..+... ..++|+++||+|...
T Consensus 90 -----~ev~~a----l~--~~D~~vlVvda~~-g~~~qt~~~~~~~~~~-----~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 90 -----IEVERS----LR--VLDGAVAVFDAVG-GVEPQSETVWRQADKY-----KVPRIAFVNKMDRTG 141 (693)
T ss_pred -----HHHHHH----HH--HcCEEEEEEECCC-CcchhhHHHHHHHHHc-----CCCEEEEEECCCCCC
Confidence 123333 33 2799999977543 3444566777766654 368899999999864
No 190
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=98.64 E-value=3e-07 Score=97.36 Aligned_cols=115 Identities=15% Similarity=0.247 Sum_probs=69.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
+.|+++|..|||||||++.++... +. ..+.+..+ ........++| ..+.||||+|-... ..+ ...
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~-f~-~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~-------~~l---~~~ 68 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDT-FC-EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERF-------NSI---TSA 68 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCC-CC-CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhh-------HHH---HHH
Confidence 479999999999999999998643 22 12212211 23334455666 67789999997321 111 122
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+++ ++|++++|.+++....-..-..++..+..... ...++++|.||+|+.
T Consensus 69 y~~--~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~--~~~piilVgNK~DL~ 118 (202)
T cd04120 69 YYR--SAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCE 118 (202)
T ss_pred Hhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccc
Confidence 333 58999999888753211111223333433322 236899999999974
No 191
>PRK00049 elongation factor Tu; Reviewed
Probab=98.64 E-value=3.7e-07 Score=105.74 Aligned_cols=117 Identities=11% Similarity=0.025 Sum_probs=75.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc------cee---cC-----CCCceeE-EEEEEEEECCEEEEEEeCCCCCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK------STI---NA-----FEPATSS-VKVIAGLVHGVKIRIFDTPGLRSP 531 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v------a~V---s~-----i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds 531 (1109)
-+..++|+++|..++|||||+++|++... ... -+ ...++|. +.......++.+++||||||..+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~- 87 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD- 87 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH-
Confidence 35668999999999999999999997311 000 00 1245554 44445556788999999999842
Q ss_pred CcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEE-EEEeccCCC
Q 036930 532 AIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAI-LCLTHAASE 601 (1109)
Q Consensus 532 ~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vI-VVLTKaD~l 601 (1109)
.+..+...+. .+|++++|++... .....+...+..+... + .+.+ +++||+|..
T Consensus 88 ---------f~~~~~~~~~--~aD~~llVVDa~~-g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~ 141 (396)
T PRK00049 88 ---------YVKNMITGAA--QMDGAILVVSAAD-GPMPQTREHILLARQV-G----VPYIVVFLNKCDMV 141 (396)
T ss_pred ---------HHHHHHhhhc--cCCEEEEEEECCC-CCchHHHHHHHHHHHc-C----CCEEEEEEeecCCc
Confidence 2222222232 5899999987654 2333455666655443 3 4654 689999985
No 192
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.63 E-value=1.9e-06 Score=102.89 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhCCCCchhhhHHHHHH
Q 036930 389 VTKDKLSDEEKRKIEKIQI--------------LRVKFLRLVQRLGHSFDDSVVAQVLYRLALALGGHSSQAVSIEAAKR 454 (1109)
Q Consensus 389 ~~~~Al~~e~g~l~~kLe~--------------~RvkLLrLlarLgaspEddlvaqVL~rl~~a~~~~~~~~~~le~a~~ 454 (1109)
....++.++...++..|+. .|..+++.+.++|++++ ++.+++.++... ......+.
T Consensus 260 ~~l~~m~~El~~lR~lle~q~~~l~~~~~~~~P~~~~l~~~L~~~Gvs~~--la~~L~~~l~~~--------~~~~~~~~ 329 (559)
T PRK12727 260 EELKQLRGELALMRQMIEREMNRLTDERLRGSPVRAQALELMDDYGFDAG--LTRDVAMQIPAD--------TELHRGRG 329 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccChHHHHHHHHHHHCCCCHH--HHHHHHHhhhcc--------cchhhHHH
Confidence 3344455555555555542 55666677777776543 444444444321 11223344
Q ss_pred HHHHHhhh-----cccccCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 455 VAEQHEIE-----DKDDMDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 455 ~a~qlla~-----~~e~L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+..++.. ..+.+..+-.|+|+|++|+|||||+..|+.
T Consensus 330 ~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 330 LMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred HHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 44444432 234566778899999999999999999875
No 193
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.62 E-value=9.6e-07 Score=101.88 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=24.1
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+..+-.|+|+|+||||||||+..|++.
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3566778999999999999999999764
No 194
>PRK12739 elongation factor G; Reviewed
Probab=98.62 E-value=1.5e-07 Score=116.02 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=76.2
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcc-----eecC-----------CCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKS-----TINA-----------FEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va-----~Vs~-----------i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
.+|+++|++|+|||||+|+|+..... .+.. ...++|. .......+++.++.||||||+.+.
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f-- 86 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF-- 86 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH--
Confidence 57999999999999999999743111 1111 1233443 445667789999999999998541
Q ss_pred chhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 534 GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 534 ~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
... +...+. .+|++++|++... .....+..+++.+... ..|+|+++||+|...
T Consensus 87 ----~~e----~~~al~--~~D~~ilVvDa~~-g~~~qt~~i~~~~~~~-----~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 87 ----TIE----VERSLR--VLDGAVAVFDAVS-GVEPQSETVWRQADKY-----GVPRIVFVNKMDRIG 139 (691)
T ss_pred ----HHH----HHHHHH--HhCeEEEEEeCCC-CCCHHHHHHHHHHHHc-----CCCEEEEEECCCCCC
Confidence 112 233333 2799999977653 3334456666665543 378899999999864
No 195
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=98.61 E-value=2e-07 Score=100.03 Aligned_cols=113 Identities=13% Similarity=0.049 Sum_probs=68.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK 550 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk 550 (1109)
++|+++|.+|||||||++.+++..... . ..|.........+....+.||||||..... .+. ..++.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~---~-~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~-------~l~---~~~~~ 66 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD---T-VSTVGGAFYLKQWGPYNISIWDTAGREQFH-------GLG---SMYCR 66 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC---C-CCccceEEEEEEeeEEEEEEEeCCCcccch-------hhH---HHHhc
Confidence 589999999999999999999765321 1 112222222223456789999999974321 111 11222
Q ss_pred cCCCcEEEEEecCCCC-CCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 551 KFPPDVVLYVDRLDTH-TRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 551 ~~gpDVVLLVvrlds~-t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+|++|+|.+++.. ++.. -...+..+..... ...++|+|.||+|+..
T Consensus 67 --~ad~~IlV~Dvt~~~Sf~~-l~~~~~~l~~~~~--~~~piIlVgNK~DL~~ 114 (220)
T cd04126 67 --GAAAVILTYDVSNVQSLEE-LEDRFLGLTDTAN--EDCLFAVVGNKLDLTE 114 (220)
T ss_pred --cCCEEEEEEECCCHHHHHH-HHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 48999999887753 2211 1112222333222 2368999999999854
No 196
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.61 E-value=5.9e-07 Score=111.90 Aligned_cols=115 Identities=14% Similarity=0.182 Sum_probs=76.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...+.+|+|+|.+|+|||||+++|.+.... .+.. ++.| .+..+...+++..++||||||..+.. .+.
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~-~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~-------~m~--- 354 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEA-GGITQHIGAYQVETNGGKITFLDTPGHEAFT-------AMR--- 354 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcc-cccc-CceeeeccEEEEEECCEEEEEEECCCCccch-------hHH---
Confidence 456788999999999999999999876543 2332 3433 34456677889999999999975421 111
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+... .+|++|||++++.. ........+..+.. ...|+|||+||+|+.
T Consensus 355 ~rga~--~aDiaILVVdAddG-v~~qT~e~i~~a~~-----~~vPiIVviNKiDl~ 402 (787)
T PRK05306 355 ARGAQ--VTDIVVLVVAADDG-VMPQTIEAINHAKA-----AGVPIIVAINKIDKP 402 (787)
T ss_pred Hhhhh--hCCEEEEEEECCCC-CCHhHHHHHHHHHh-----cCCcEEEEEECcccc
Confidence 11222 37999999877642 22223334443322 236899999999984
No 197
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.61 E-value=1.7e-07 Score=96.77 Aligned_cols=114 Identities=18% Similarity=0.233 Sum_probs=67.9
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
+|+|+|.+|||||||++.+++..... .+.|...........+++ ..+.||||||..... .+. ..++
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-------~l~---~~~~ 69 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFD-------RLR---SLSY 69 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCChhcc-------ccc---cccc
Confidence 79999999999999999999764321 111211111112233444 578899999974321 010 0111
Q ss_pred hcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 550 KKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..+|++++|.+++... +......++..+.... ...|+++|.||+|+..
T Consensus 70 --~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~ 118 (189)
T cd04134 70 --ADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLRE 118 (189)
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence 2589999998877542 2111112344444332 2478999999999854
No 198
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.60 E-value=1.1e-07 Score=95.22 Aligned_cols=115 Identities=16% Similarity=0.135 Sum_probs=66.6
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
.+|+++|++|||||||++.+++.... ..+.|.+.........+++ ..+.+|||||...... +. ...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~---~~~ 69 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-------LR---PLS 69 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhh-------cc---ccc
Confidence 58999999999999999999975421 1121221111122334554 4678999999743210 00 011
Q ss_pred HhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+ .+.|++++|.+++... +......++..+.... ...|+++|.||+|+..
T Consensus 70 ~--~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 119 (175)
T cd01870 70 Y--PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRN 119 (175)
T ss_pred c--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhccc
Confidence 2 2579999997776432 1100011233333321 2479999999999754
No 199
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=5.2e-08 Score=106.80 Aligned_cols=186 Identities=21% Similarity=0.281 Sum_probs=109.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecC---CCCce-eEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINA---FEPAT-SSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~---i~pgT-Trv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
++.++|+.||.||.|||||+++|++..- ...+ ..|+. -+...+...-.+ .+++|+||.|+++.-......+-|
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f-~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~i 118 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKF-ESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPI 118 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhcccc-CCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchH
Confidence 5789999999999999999999998653 2211 11111 111111111122 578999999999864322222333
Q ss_pred HHHHH--------------HHH---hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCC
Q 036930 542 LASIR--------------KSI---KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPD 604 (1109)
Q Consensus 542 l~~Ik--------------k~L---k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd 604 (1109)
+..|. +.+ ...++|++||++..+...+..-|.-.++.+.+. .++|.|+.|+|...
T Consensus 119 VdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtis-- 190 (406)
T KOG3859|consen 119 VDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTIS-- 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhh--
Confidence 32222 111 223789999999888877766666666666553 68899999999653
Q ss_pred CCCCCCccHHHHHhhcHHHHHHHHHHHhCCCce---------eccC--CCCHHHHHhhHHHHHhccccceecCCCCCch
Q 036930 605 GPSGLPLSYEVFVGQQSHAIQQRISQAIGDPHL---------MNLN--MMHPVSLVENHQSCQKNRIGEIVLPNGQSWR 672 (1109)
Q Consensus 605 ~~~~~p~sieefV~q~~~~LQelI~qc~gr~~l---------fn~s--~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~ 672 (1109)
..+..+-..+.+.+++.+-..-|.. .|.. ...|.+++-.......+ .+|+.....+|-
T Consensus 191 --------K~eL~~FK~kimsEL~sngv~IYqfPtDdetva~~N~~mn~~lPFAVvGSte~vKvg--nkmvraRqyPwG 259 (406)
T KOG3859|consen 191 --------KEELKRFKIKIMSELVSNGVQIYQFPTDDETVAKANSEMNHSLPFAVVGSTEEVKVG--NKMVKARQYPWG 259 (406)
T ss_pred --------HHHHHHHHHHHHHHHHhcCceeeeccchHHHHHHHHHHhhcCCceeEecchHhhhhh--hhhhhhccCCCC
Confidence 3333334455666666665544432 1111 11255555554444432 356666677773
No 200
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.60 E-value=6.5e-08 Score=100.02 Aligned_cols=56 Identities=30% Similarity=0.490 Sum_probs=41.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc--------ceecCCCCceeE-EEEEEEEECCEEEEEEeCCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK--------STINAFEPATSS-VKVIAGLVHGVKIRIFDTPGL 528 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v--------a~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL 528 (1109)
.+.+|+++|.||||||||||+|++... ..++.. |+||+ ...... . ..+.||||||+
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~-~gtT~~~~~~~~--~-~~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPI-PGTTLDLIKIPL--G-NGKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCC-CCeeeeeEEEec--C-CCCEEEeCcCC
Confidence 357899999999999999999998653 234444 78887 444333 2 25799999997
No 201
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=98.60 E-value=5.5e-07 Score=94.23 Aligned_cols=116 Identities=19% Similarity=0.234 Sum_probs=72.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
...++|+|+|..|||||||++.+..... . ..+.+..+ ........+++ ..+.||||||.... ..+.
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~-~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~-------~~l~-- 72 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGST-E-SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRF-------CTIF-- 72 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCC-C-CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHH--
Confidence 3458999999999999999999986432 1 12212211 12233345566 66789999998431 1111
Q ss_pred HHHHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..+.+ ++|++|+|.+++... +.. -..++..+.... ...|+|||-||.|+.
T Consensus 73 -~~~~~--~ad~illVfD~t~~~Sf~~-~~~w~~~i~~~~---~~~piilVGNK~DL~ 123 (189)
T cd04121 73 -RSYSR--GAQGIILVYDITNRWSFDG-IDRWIKEIDEHA---PGVPKILVGNRLHLA 123 (189)
T ss_pred -HHHhc--CCCEEEEEEECcCHHHHHH-HHHHHHHHHHhC---CCCCEEEEEECccch
Confidence 12222 589999998887532 221 223445554432 247999999999984
No 202
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.60 E-value=3.7e-07 Score=94.18 Aligned_cols=114 Identities=13% Similarity=0.094 Sum_probs=67.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+++|.+|||||||++.+++.. +. ..+.|...........+++ ..+.||||||-.... .+. ..+
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~-f~-~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~-------~~~---~~~ 69 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDC-YP-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYD-------NVR---PLC 69 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CC-CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhh-------hcc---hhh
Confidence 689999999999999999998754 22 2222222111222334555 567899999963211 110 011
Q ss_pred HhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+ .++|++|+|.+++... +...-..++..+.... ...++|+|.||+|+.
T Consensus 70 ~--~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~---~~~~iilVgnK~DL~ 118 (178)
T cd04131 70 Y--PDSDAVLICFDISRPETLDSVLKKWRGEIQEFC---PNTKVLLVGCKTDLR 118 (178)
T ss_pred c--CCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC---CCCCEEEEEEChhhh
Confidence 2 2589999998886432 2100012344444432 246899999999974
No 203
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=98.59 E-value=3.9e-07 Score=93.17 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=67.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+++|.+|||||||+..++...- . ..+.|...........+++ ..+.+|||||..... .+ ...+
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f-~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~---~~~~ 69 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF-P-GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RL---RPLS 69 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC-C-CcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhh-------hh---hhhh
Confidence 6899999999999999999986432 1 2222222112222334555 567899999963321 11 1112
Q ss_pred HhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++ ++|++|+|.+++... +......++..+.... ...|+|+|.||+|+.
T Consensus 70 ~~--~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~---~~~piilvgnK~Dl~ 118 (174)
T cd01871 70 YP--QTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLR 118 (174)
T ss_pred cC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEeeChhhc
Confidence 22 589999998887532 1110012333333321 247999999999974
No 204
>PRK12735 elongation factor Tu; Reviewed
Probab=98.58 E-value=3.6e-07 Score=105.84 Aligned_cols=118 Identities=10% Similarity=0.045 Sum_probs=73.2
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCC------Cccee---cC-----CCCceeE-EEEEEEEECCEEEEEEeCCCCCC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGE------EKSTI---NA-----FEPATSS-VKVIAGLVHGVKIRIFDTPGLRS 530 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~------~va~V---s~-----i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~d 530 (1109)
+-+..++|+++|.+++|||||+|+|++. ..+.. .+ ...++|. +.......++.++.||||||..+
T Consensus 8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence 3456789999999999999999999962 11110 00 1234443 44445556788999999999731
Q ss_pred CCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCe-EEEEEeccCCC
Q 036930 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQN-AILCLTHAASE 601 (1109)
Q Consensus 531 s~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~-vIVVLTKaD~l 601 (1109)
....+...+. .+|++++|++.... ........+..+.. .+ .+ +|+|+||+|+.
T Consensus 88 ----------f~~~~~~~~~--~aD~~llVvda~~g-~~~qt~e~l~~~~~-~g----i~~iivvvNK~Dl~ 141 (396)
T PRK12735 88 ----------YVKNMITGAA--QMDGAILVVSAADG-PMPQTREHILLARQ-VG----VPYIVVFLNKCDMV 141 (396)
T ss_pred ----------HHHHHHhhhc--cCCEEEEEEECCCC-CchhHHHHHHHHHH-cC----CCeEEEEEEecCCc
Confidence 1222222232 48999999776542 22234445554432 23 45 45689999985
No 205
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.58 E-value=1e-06 Score=94.78 Aligned_cols=88 Identities=18% Similarity=0.258 Sum_probs=58.3
Q ss_pred EEEEEecCCCChhHHHHHHhCC-CcceecCCCCceeE-EEEEEEEE---CCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGE-EKSTINAFEPATSS-VKVIAGLV---HGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~-~va~Vs~i~pgTTr-v~e~~~~i---~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
.|+|+|++++|||+|+|.|+|. ..+.++.....||+ +......+ .+..++|+||||+.+...........+..+.
T Consensus 9 vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~ 88 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALA 88 (224)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHH
Confidence 4679999999999999999998 46777764345555 44443333 3688999999999887543212222233333
Q ss_pred HHHhcCCCcEEEEEecC
Q 036930 547 KSIKKFPPDVVLYVDRL 563 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrl 563 (1109)
..+ .+++||.+..
T Consensus 89 ~ll----ss~~i~n~~~ 101 (224)
T cd01851 89 TLL----SSVLIYNSWE 101 (224)
T ss_pred HHH----hCEEEEeccC
Confidence 222 5788888443
No 206
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.58 E-value=6.6e-07 Score=96.45 Aligned_cols=112 Identities=14% Similarity=0.143 Sum_probs=66.6
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCC---------------CCceeEEEEEEEEEC----------CEEEEEEeCC
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAF---------------EPATSSVKVIAGLVH----------GVKIRIFDTP 526 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i---------------~pgTTrv~e~~~~i~----------G~~VtLIDTP 526 (1109)
+|+++|..++|||||+++|+.......... ...|.........+. +..+.|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999985432111000 011111111112222 6789999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 527 GLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 527 GL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
|..+.. ..+. ..+. .+|++++|+++... .......+++.+... ..++|+|+||+|+.
T Consensus 82 G~~~f~------~~~~----~~l~--~aD~~ilVvD~~~g-~~~~t~~~l~~~~~~-----~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFS------SEVT----AALR--LCDGALVVVDAVEG-VCVQTETVLRQALKE-----RVKPVLVINKIDRL 138 (222)
T ss_pred CccccH------HHHH----HHHH--hcCeeEEEEECCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECCCcc
Confidence 996522 1222 2222 38999999877642 222234444444322 25899999999975
No 207
>PRK12736 elongation factor Tu; Reviewed
Probab=98.58 E-value=6.9e-07 Score=103.45 Aligned_cols=118 Identities=12% Similarity=0.019 Sum_probs=74.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc------cee---cC-----CCCceeE-EEEEEEEECCEEEEEEeCCCCCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK------STI---NA-----FEPATSS-VKVIAGLVHGVKIRIFDTPGLRSP 531 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v------a~V---s~-----i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds 531 (1109)
.+..++|+++|..++|||||+++|++... +.. .+ ...++|. +.......++.++.||||||..+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~- 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD- 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH-
Confidence 45678999999999999999999987311 110 00 1244444 44444455778999999999632
Q ss_pred CcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 532 AIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 532 ~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+......+. .+|++|+|++.+. .....+...+..+... | .+++|+|+||+|+.
T Consensus 88 ---------f~~~~~~~~~--~~d~~llVvd~~~-g~~~~t~~~~~~~~~~-g---~~~~IvviNK~D~~ 141 (394)
T PRK12736 88 ---------YVKNMITGAA--QMDGAILVVAATD-GPMPQTREHILLARQV-G---VPYLVVFLNKVDLV 141 (394)
T ss_pred ---------HHHHHHHHHh--hCCEEEEEEECCC-CCchhHHHHHHHHHHc-C---CCEEEEEEEecCCc
Confidence 1111222222 4899999987653 2233355566655443 3 23478899999975
No 208
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.57 E-value=6.3e-07 Score=94.60 Aligned_cols=113 Identities=16% Similarity=0.203 Sum_probs=65.1
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceec---------CC--------CCcee-EEEEEEEEE-----CCEEEEEEeCCCC
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTIN---------AF--------EPATS-SVKVIAGLV-----HGVKIRIFDTPGL 528 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs---------~i--------~pgTT-rv~e~~~~i-----~G~~VtLIDTPGL 528 (1109)
+|+|+|..|+|||||++.|+........ .+ ..+.| ........+ ....+.||||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864332110 00 00111 111122222 2378999999998
Q ss_pred CCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 529 RSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 529 ~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+.. .... ..+. .+|++++|++..... ......+++.+... ..++++|+||+|...
T Consensus 82 ~~f~------~~~~----~~~~--~aD~~llVvD~~~~~-~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~ 137 (213)
T cd04167 82 VNFM------DEVA----AALR--LSDGVVLVVDVVEGV-TSNTERLIRHAILE-----GLPIVLVINKIDRLI 137 (213)
T ss_pred cchH------HHHH----HHHH--hCCEEEEEEECCCCC-CHHHHHHHHHHHHc-----CCCEEEEEECcccCc
Confidence 6521 1122 2222 379999998765422 11122333333221 378999999999863
No 209
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.57 E-value=8.5e-08 Score=96.36 Aligned_cols=58 Identities=31% Similarity=0.513 Sum_probs=46.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGL 528 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL 528 (1109)
....+|+++|.|||||||++|+|++...+.++.. ++||+.... ..+ +..+.||||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~-~~~-~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQE-VKL-DNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCC-CCcccceEE-EEe-cCCEEEEECCCC
Confidence 4568999999999999999999999888788886 777773322 222 356899999997
No 210
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.57 E-value=2.3e-07 Score=102.35 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=50.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
...++|+++|.||||||||||+|++.....++.. |+||+... ...+ +..+.||||||+.....
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~-~g~T~~~~-~~~~-~~~~~l~DtPG~~~~~~ 178 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNR-PGVTKGQQ-WIKL-SDGLELLDTPGILWPKF 178 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeecceE-EEEe-CCCEEEEECCCcccCCC
Confidence 4568999999999999999999999988888886 88887322 2233 34689999999976543
No 211
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.55 E-value=8.4e-07 Score=95.27 Aligned_cols=110 Identities=19% Similarity=0.203 Sum_probs=70.5
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc-ceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK-STINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v-a~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...+..|+|+|++|+|||||+|+|++... ..+... .++.. .....+.++.++||||.. ..++..+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~-~g~i~----i~~~~~~~i~~vDtPg~~---------~~~l~~a 101 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDI-KGPIT----VVTGKKRRLTFIECPNDI---------NAMIDIA 101 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccc-cccEE----EEecCCceEEEEeCCchH---------HHHHHHH
Confidence 56778899999999999999999998632 122222 33311 122368899999999742 2233332
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCe-EEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQN-AILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~-vIVVLTKaD~l~ 602 (1109)
+ .+|++++|++... .....+..++..+... | .+ +|+|+||+|...
T Consensus 102 ----k--~aDvVllviDa~~-~~~~~~~~i~~~l~~~-g----~p~vi~VvnK~D~~~ 147 (225)
T cd01882 102 ----K--VADLVLLLIDASF-GFEMETFEFLNILQVH-G----FPRVMGVLTHLDLFK 147 (225)
T ss_pred ----H--hcCEEEEEEecCc-CCCHHHHHHHHHHHHc-C----CCeEEEEEeccccCC
Confidence 2 2799999977643 2333355566655443 2 45 455999999864
No 212
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.55 E-value=2.6e-07 Score=104.49 Aligned_cols=86 Identities=23% Similarity=0.286 Sum_probs=57.7
Q ss_pred EEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEE---------------------E---CCEEEEEEeCCC
Q 036930 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGL---------------------V---HGVKIRIFDTPG 527 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~---------------------i---~G~~VtLIDTPG 527 (1109)
|+|+|.||||||||+|+|++.. +.++++ |+||. +...... + .+.++.+|||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~-pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANY-PFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCC-CCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 5799999999999999999876 477887 77764 3332222 1 236899999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCC
Q 036930 528 LRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDT 565 (1109)
Q Consensus 528 L~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds 565 (1109)
+...... .+.+-..+-..++ .+|++++|+++..
T Consensus 79 lv~ga~~---~~glg~~fL~~ir--~aD~ii~Vvd~~~ 111 (318)
T cd01899 79 LVPGAHE---GKGLGNKFLDDLR--DADALIHVVDASG 111 (318)
T ss_pred CCCCccc---hhhHHHHHHHHHH--HCCEEEEEEeCCC
Confidence 9764321 1222222222333 3899999987753
No 213
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.55 E-value=1.1e-06 Score=101.65 Aligned_cols=119 Identities=12% Similarity=0.039 Sum_probs=73.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC------Ccceec---C-----CCCceeE-EEEEEEEECCEEEEEEeCCCCCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE------EKSTIN---A-----FEPATSS-VKVIAGLVHGVKIRIFDTPGLRSP 531 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~------~va~Vs---~-----i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds 531 (1109)
.+..++|+++|..++|||||+++|++. ..+... + ...++|. +.......++.++.||||||..+.
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 356689999999999999999999843 211110 0 1244444 444445556789999999998431
Q ss_pred CcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 532 AIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 532 ~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...+... +. .+|++++|++++.. ........+..+... + .+++|+|+||+|+..
T Consensus 89 ------~~~~~~~----~~--~~D~~ilVvda~~g-~~~qt~e~l~~~~~~-g---i~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 89 ------VKNMITG----AA--QMDGAILVVSATDG-PMPQTREHILLARQV-G---VPYIVVFLNKCDMVD 142 (394)
T ss_pred ------HHHHHHH----Hh--hCCEEEEEEECCCC-CcHHHHHHHHHHHHc-C---CCEEEEEEEecccCC
Confidence 1122222 22 48999999776642 222344555555432 2 245567899999753
No 214
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=98.54 E-value=6.7e-07 Score=92.88 Aligned_cols=116 Identities=14% Similarity=0.099 Sum_probs=69.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+++|.+|||||||++.++...- . ..+.|...........+++ ..+.||||+|-... ..+. .
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f-~-~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~-------~~~~---~ 71 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCF-P-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY-------DNVR---P 71 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC-C-CccCCceeeeeEEEEEECCEEEEEEEEECCCchhh-------Hhhh---h
Confidence 357999999999999999999986532 1 2221221112222344555 56889999986321 1111 1
Q ss_pred HHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.++ .++|++|+|.+++... +..-...++..+.... ...++|+|.||+|+.
T Consensus 72 ~~~--~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~---~~~piilVgNK~DL~ 122 (182)
T cd04172 72 LSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQEFC---PNTKMLLVGCKSDLR 122 (182)
T ss_pred hhc--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC---CCCCEEEEeEChhhh
Confidence 122 2589999998877532 2110013344444432 246899999999974
No 215
>PLN03126 Elongation factor Tu; Provisional
Probab=98.54 E-value=1.4e-06 Score=103.47 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=74.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceec---------C-----CCCceeE-EEEEEEEECCEEEEEEeCCCCCCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTIN---------A-----FEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs---------~-----i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~ 532 (1109)
++.++|+++|.+++|||||+++|++......+ + ...+.|. +...+...++.+++||||||..+.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f- 157 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY- 157 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH-
Confidence 55689999999999999999999953221110 0 1123333 444455678899999999997431
Q ss_pred cchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 533 IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 533 ~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...+... +. .+|++++|++.... ......+.+..+.. +| .+++|+++||+|+..
T Consensus 158 -----~~~~~~g----~~--~aD~ailVVda~~G-~~~qt~e~~~~~~~-~g---i~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 158 -----VKNMITG----AA--QMDGAILVVSGADG-PMPQTKEHILLAKQ-VG---VPNMVVFLNKQDQVD 211 (478)
T ss_pred -----HHHHHHH----Hh--hCCEEEEEEECCCC-CcHHHHHHHHHHHH-cC---CCeEEEEEecccccC
Confidence 1122222 22 48999999776532 22234445554433 23 245888999999853
No 216
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.53 E-value=4.9e-07 Score=110.47 Aligned_cols=119 Identities=15% Similarity=0.113 Sum_probs=74.6
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecC---------CCCcee----------------------E-EEEEEEE
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINA---------FEPATS----------------------S-VKVIAGL 514 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~---------i~pgTT----------------------r-v~e~~~~ 514 (1109)
.+..++|+++|.+|+|||||+|.|+......+.. ...+|| . .......
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 3445799999999999999999999765443311 012332 1 2334556
Q ss_pred ECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEE
Q 036930 515 VHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILC 594 (1109)
Q Consensus 515 i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVV 594 (1109)
+++.+++||||||..+ ....+.. .+. .+|++|+|++.... ....+...+..+.. ++ .+++|||
T Consensus 101 ~~~~~~~liDtPG~~~------f~~~~~~----~~~--~aD~~llVvda~~g-~~~~t~e~~~~~~~-~~---~~~iivv 163 (632)
T PRK05506 101 TPKRKFIVADTPGHEQ------YTRNMVT----GAS--TADLAIILVDARKG-VLTQTRRHSFIASL-LG---IRHVVLA 163 (632)
T ss_pred cCCceEEEEECCChHH------HHHHHHH----HHH--hCCEEEEEEECCCC-ccccCHHHHHHHHH-hC---CCeEEEE
Confidence 7788999999999632 1111222 222 48999999876532 22223344443332 23 3688999
Q ss_pred EeccCCCC
Q 036930 595 LTHAASEP 602 (1109)
Q Consensus 595 LTKaD~l~ 602 (1109)
+||+|+..
T Consensus 164 vNK~D~~~ 171 (632)
T PRK05506 164 VNKMDLVD 171 (632)
T ss_pred EEeccccc
Confidence 99999853
No 217
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.53 E-value=6.8e-07 Score=108.49 Aligned_cols=114 Identities=13% Similarity=0.150 Sum_probs=73.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..+.+|+++|.+|+|||||+|+|.+..... ... +++|. +......+++ .+++||||||..+.. .+.
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~-~e~-~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~-------~~r--- 152 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ-GEA-GGITQHIGAYHVENEDGKMITFLDTPGHEAFT-------SMR--- 152 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCccc-ccC-CceeecceEEEEEECCCcEEEEEECCCCcchh-------hHH---
Confidence 456789999999999999999999865432 222 45554 4444555654 489999999975421 111
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+.. ..+|++++|++++... .......++.+.. ...|+|+++||+|+.
T Consensus 153 ~rga--~~aDiaILVVda~dgv-~~qT~e~i~~~~~-----~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 153 ARGA--KVTDIVVLVVAADDGV-MPQTIEAISHAKA-----ANVPIIVAINKIDKP 200 (587)
T ss_pred Hhhh--ccCCEEEEEEECCCCC-CHhHHHHHHHHHH-----cCCCEEEEEECcccc
Confidence 1122 2479999998766422 1222333333222 136899999999974
No 218
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.52 E-value=3.8e-07 Score=105.58 Aligned_cols=125 Identities=19% Similarity=0.182 Sum_probs=77.6
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC----Ccc-----------eecCCCCc----eeEEEE---EEEEE-CC----EEEEE
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE----EKS-----------TINAFEPA----TSSVKV---IAGLV-HG----VKIRI 522 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~----~va-----------~Vs~i~pg----TTrv~e---~~~~i-~G----~~VtL 522 (1109)
.+.|.++|+.++|||||||++++. +.. .+++. +| ||.+.. ...++ .. .+|++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~-~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSA-AGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCC-CCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 478999999999999999999998 555 45554 55 444322 22222 22 78999
Q ss_pred EeCCCCCCCC-cchhhhHH--H----------------HHHHHHHHhcCCCcEEEEEe-cCC-----CCCCCCCcHHHHH
Q 036930 523 FDTPGLRSPA-IGRTVNKK--T----------------LASIRKSIKKFPPDVVLYVD-RLD-----THTRDHNDLPLLK 577 (1109)
Q Consensus 523 IDTPGL~ds~-~~~~~~ee--I----------------l~~Ikk~Lk~~gpDVVLLVv-rld-----s~t~d~eD~~lLk 577 (1109)
|||+|+.+.. .......+ + .--.++.+.. ..++.|+|. +.+ +......+.++++
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~d-hstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQE-HSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHh-cCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999998753 11111111 0 0001223331 378888885 221 1122333567777
Q ss_pred HHHhhhCCCCCCeEEEEEeccCCC
Q 036930 578 SLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 578 ~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+++. .+|+|+|+|++|-.
T Consensus 175 eLk~~-----~kPfiivlN~~dp~ 193 (492)
T TIGR02836 175 ELKEL-----NKPFIILLNSTHPY 193 (492)
T ss_pred HHHhc-----CCCEEEEEECcCCC
Confidence 77765 68999999999943
No 219
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.52 E-value=1.7e-06 Score=107.23 Aligned_cols=115 Identities=12% Similarity=0.175 Sum_probs=71.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEE--E--CCEEEEEEeCCCCCCCCcchhhhHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGL--V--HGVKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~--i--~G~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
...+.+|+|+|.+|+|||||+++|++..... ... ++.|. +..+... . .+..++||||||....
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~-~e~-~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F---------- 308 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQ-KEA-GGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF---------- 308 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCcc-ccC-CccccccceEEEEEEecCCceEEEEEECCcHHHH----------
Confidence 3566789999999999999999999765432 222 33332 2222222 2 3589999999997321
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.....+.+. .+|++++|++++.. ........++.+.. ...|+|||+||+|..
T Consensus 309 ~~mr~rg~~--~aDiaILVVDA~dG-v~~QT~E~I~~~k~-----~~iPiIVViNKiDl~ 360 (742)
T CHL00189 309 SSMRSRGAN--VTDIAILIIAADDG-VKPQTIEAINYIQA-----ANVPIIVAINKIDKA 360 (742)
T ss_pred HHHHHHHHH--HCCEEEEEEECcCC-CChhhHHHHHHHHh-----cCceEEEEEECCCcc
Confidence 111122232 38999999876542 22223344444432 247899999999975
No 220
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.51 E-value=1.4e-07 Score=106.69 Aligned_cols=63 Identities=29% Similarity=0.485 Sum_probs=51.5
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
+...+++++||-||||||||||+|+|+..+.++.. ||+|+ .+.+.. ...+.|+||||+.....
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~-PG~Tk~~q~i~~---~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNR-PGTTKGIQWIKL---DDGIYLLDTPGIIPPKF 192 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCC-CceecceEEEEc---CCCeEEecCCCcCCCCc
Confidence 44568999999999999999999999999999997 89887 433332 33488999999987654
No 221
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.51 E-value=1.1e-06 Score=94.71 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=69.8
Q ss_pred EEEEEecCCCChhHHHHHHhCCCc------ceecC------CCCc-e------------------------eEEEEEEEE
Q 036930 472 NILVLGKTGVGKSATINSIFGEEK------STINA------FEPA-T------------------------SSVKVIAGL 514 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~v------a~Vs~------i~pg-T------------------------Trv~e~~~~ 514 (1109)
||+++|..++|||||++.|..... +...- ...| | .........
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999984211 00000 0000 0 000012234
Q ss_pred ECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEE
Q 036930 515 VHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILC 594 (1109)
Q Consensus 515 i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVV 594 (1109)
..++.++||||||..+. .+.....+....+|++++|++++. .....+..++.++... ..|+++|
T Consensus 81 ~~~~~i~liDtpG~~~~----------~~~~~~~~~~~~~D~~llVvda~~-g~~~~d~~~l~~l~~~-----~ip~ivv 144 (224)
T cd04165 81 KSSKLVTFIDLAGHERY----------LKTTLFGLTGYAPDYAMLVVAANA-GIIGMTKEHLGLALAL-----NIPVFVV 144 (224)
T ss_pred eCCcEEEEEECCCcHHH----------HHHHHHhhcccCCCEEEEEEECCC-CCcHHHHHHHHHHHHc-----CCCEEEE
Confidence 56789999999997431 112222232224899999987654 2334466777776654 3689999
Q ss_pred EeccCCCC
Q 036930 595 LTHAASEP 602 (1109)
Q Consensus 595 LTKaD~l~ 602 (1109)
+||+|...
T Consensus 145 vNK~D~~~ 152 (224)
T cd04165 145 VTKIDLAP 152 (224)
T ss_pred EECccccC
Confidence 99999753
No 222
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.51 E-value=3.8e-07 Score=105.91 Aligned_cols=86 Identities=22% Similarity=0.316 Sum_probs=58.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEE---------------------EC---CEEEEEEeC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGL---------------------VH---GVKIRIFDT 525 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~---------------------i~---G~~VtLIDT 525 (1109)
++|+|||.||||||||+|+|++... .++.+ |+||. +...... ++ ..++.|+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y-~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANY-PFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCC-CCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 6899999999999999999998764 66777 77664 4433222 12 266889999
Q ss_pred CCCCCCCcch-hhhHHHHHHHHHHHhcCCCcEEEEEecCC
Q 036930 526 PGLRSPAIGR-TVNKKTLASIRKSIKKFPPDVVLYVDRLD 564 (1109)
Q Consensus 526 PGL~ds~~~~-~~~eeIl~~Ikk~Lk~~gpDVVLLVvrld 564 (1109)
||+....... ......+..+ + .+|++++|++..
T Consensus 80 aGl~~ga~~g~glg~~fL~~i----r--~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDL----R--QADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHH----H--HCCEEEEEEeCC
Confidence 9997643211 1222333333 3 389999997765
No 223
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.49 E-value=1.8e-07 Score=92.77 Aligned_cols=56 Identities=30% Similarity=0.460 Sum_probs=43.7
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCC
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRS 530 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~d 530 (1109)
+++++|.+|||||||+|+|++.....++.. +++|+... ...+++ .+.||||||+.-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~-~~~~~~~~-~~~~~~-~~~i~DtpG~~~ 140 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSAT-PGKTKHFQ-TIFLTP-TITLCDCPGLVF 140 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCC-CCcccceE-EEEeCC-CEEEEECCCcCC
Confidence 899999999999999999999887777774 67666322 233333 689999999853
No 224
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.49 E-value=1.4e-06 Score=90.14 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=66.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCce-eEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT-SSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT-Trv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
+||+++|.+|||||||++.+++..- . ..+.|.. ..+......+++ ..+.||||+|-.... .+ ...
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f-~-~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~-------~~---~~~ 68 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF-D-EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFI-------NM---LPL 68 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC-C-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHH-------Hh---hHH
Confidence 5899999999999999999987542 1 2222221 123233445566 567899999974311 11 111
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+++ .+|++++|.+++....-..-..++..+..... . ..+ |+|.||+|+..
T Consensus 69 ~~~--~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~-~-~~p-ilVgnK~Dl~~ 118 (182)
T cd04128 69 VCN--DAVAILFMFDLTRKSTLNSIKEWYRQARGFNK-T-AIP-ILVGTKYDLFA 118 (182)
T ss_pred HCc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C-CCE-EEEEEchhccc
Confidence 222 58999999887653211111123344433212 1 234 68899999853
No 225
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.49 E-value=1.2e-06 Score=95.01 Aligned_cols=116 Identities=12% Similarity=0.100 Sum_probs=68.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||++.+++.. +. ..+.|...........+++ +.+.||||||-... ..+. .
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~-F~-~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~-------~~~~---~ 79 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDC-YP-ETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYY-------DNVR---P 79 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCC-CC-CCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhh-------HHHH---H
Confidence 45799999999999999999998653 22 1221221111122334454 56889999995321 1111 1
Q ss_pred HHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.++ .++|++++|.+++... +......++..+..... ..|+|+|.||+|+.
T Consensus 80 ~~~--~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~ 130 (232)
T cd04174 80 LCY--SDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLR 130 (232)
T ss_pred HHc--CCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccc
Confidence 122 2589999998887432 11001123344444322 36899999999974
No 226
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.48 E-value=1.6e-06 Score=101.03 Aligned_cols=117 Identities=17% Similarity=0.199 Sum_probs=72.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcce------------------------ecC-----CCCceeE-EEEEEEEECCE
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKST------------------------INA-----FEPATSS-VKVIAGLVHGV 518 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~------------------------Vs~-----i~pgTTr-v~e~~~~i~G~ 518 (1109)
..++|+++|..++|||||++.|+...... +.+ ...++|. +......+++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 45899999999999999999998422110 001 0124443 55566677889
Q ss_pred EEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCC--CCCcHHHHHHHHhhhCCCCCCeEEEEEe
Q 036930 519 KIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTR--DHNDLPLLKSLTSSLGSSVWQNAILCLT 596 (1109)
Q Consensus 519 ~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~--d~eD~~lLk~I~e~FG~~v~k~vIVVLT 596 (1109)
.+.||||||..+ ....+...+. .+|++++|++++.... .......+. +...++ .+++|||+|
T Consensus 86 ~i~iiDtpGh~~----------f~~~~~~~~~--~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~---~~~iIVviN 149 (426)
T TIGR00483 86 EVTIVDCPGHRD----------FIKNMITGAS--QADAAVLVVAVGDGEFEVQPQTREHAF-LARTLG---INQLIVAIN 149 (426)
T ss_pred EEEEEECCCHHH----------HHHHHHhhhh--hCCEEEEEEECCCCCcccCCchHHHHH-HHHHcC---CCeEEEEEE
Confidence 999999999532 1111222222 4899999988765321 111122122 223333 258999999
Q ss_pred ccCCC
Q 036930 597 HAASE 601 (1109)
Q Consensus 597 KaD~l 601 (1109)
|+|+.
T Consensus 150 K~Dl~ 154 (426)
T TIGR00483 150 KMDSV 154 (426)
T ss_pred Chhcc
Confidence 99985
No 227
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.47 E-value=1.1e-06 Score=101.63 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=77.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc-----ceecCCCCceeEEEEE--------EEE-------------------
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK-----STINAFEPATSSVKVI--------AGL------------------- 514 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v-----a~Vs~i~pgTTrv~e~--------~~~------------------- 514 (1109)
...+-.|+|||||||||||++..|+.+.. -+|+-+ ||.++++ |+.
T Consensus 200 ~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiI---TtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai 276 (407)
T COG1419 200 VEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAII---TTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAI 276 (407)
T ss_pred cccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEE---EeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHH
Confidence 34467889999999999999999987654 123333 4433322 111
Q ss_pred --ECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEE
Q 036930 515 --VHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAI 592 (1109)
Q Consensus 515 --i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vI 592 (1109)
...+.++||||.|....+ ...+..++.++..+...-+++|++.+... .-|+.|.+.|+.-....+|
T Consensus 277 ~~l~~~d~ILVDTaGrs~~D------~~~i~el~~~~~~~~~i~~~Lvlsat~K~------~dlkei~~~f~~~~i~~~I 344 (407)
T COG1419 277 EALRDCDVILVDTAGRSQYD------KEKIEELKELIDVSHSIEVYLVLSATTKY------EDLKEIIKQFSLFPIDGLI 344 (407)
T ss_pred HHhhcCCEEEEeCCCCCccC------HHHHHHHHHHHhccccceEEEEEecCcch------HHHHHHHHHhccCCcceeE
Confidence 123678999999986543 24445555666554445567776665533 3477788888866556666
Q ss_pred EEEeccCCCC
Q 036930 593 LCLTHAASEP 602 (1109)
Q Consensus 593 VVLTKaD~l~ 602 (1109)
|||.|+..
T Consensus 345 --~TKlDET~ 352 (407)
T COG1419 345 --FTKLDETT 352 (407)
T ss_pred --EEcccccC
Confidence 99999854
No 228
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.47 E-value=1.6e-06 Score=92.03 Aligned_cols=117 Identities=19% Similarity=0.149 Sum_probs=68.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEEC-------CEEEEEEeCCCCCCCCcchhhhHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVH-------GVKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i~-------G~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
++|+|+|.+|||||||++.+++..... .+ ..|.- +......++ ...+.||||+|-... ..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~--~~-~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~-------~~l 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLG--RP-SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESV-------KST 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCC--CC-CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhH-------HHH
Confidence 589999999999999999999764321 11 11221 111122221 256889999998431 111
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhC-----------------CCCCCeEEEEEeccCCCC
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLG-----------------SSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG-----------------~~v~k~vIVVLTKaD~l~ 602 (1109)
...+++ ++|++|+|.+++....-..-..++..+...-+ .....|+|||-||+|+..
T Consensus 71 ---~~~~yr--~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 71 ---RAVFYN--QVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred ---HHHHhC--cCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 112232 58999999888753211111233444433210 112468999999999854
No 229
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=98.47 E-value=1.2e-06 Score=94.39 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=66.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+|+|.+|||||||++.+++..- . ..+.|...........+++ ..+.||||+|-..-. .+...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f-~-~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~-----------~l~~~ 68 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY-P-GSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYD-----------NVRPL 68 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-C-CccCCccccceEEEEEECCEEEEEEEEeCCCcHHHH-----------HHhHH
Confidence 6899999999999999999987542 2 2222222111222334555 557789999963211 11111
Q ss_pred HhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.-..+|++|+|.+++... +......+...+.... ...|+|+|.||+|+..
T Consensus 69 -~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~---~~~piiLVgnK~DL~~ 119 (222)
T cd04173 69 -AYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC---PNAKVVLVGCKLDMRT 119 (222)
T ss_pred -hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEECccccc
Confidence 113589999998877532 1100011122222221 2468999999999853
No 230
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.46 E-value=1e-06 Score=104.43 Aligned_cols=117 Identities=16% Similarity=0.106 Sum_probs=72.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecC---------CCCc-----------------------eeEEEEEEEEE
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINA---------FEPA-----------------------TSSVKVIAGLV 515 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~---------i~pg-----------------------TTrv~e~~~~i 515 (1109)
+..++|+++|..++|||||++.|+......... ...+ |..+......+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 456899999999999999999998654322110 0011 22333445567
Q ss_pred CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEE
Q 036930 516 HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCL 595 (1109)
Q Consensus 516 ~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVL 595 (1109)
++.+++||||||..+ ....+.. .+ ..+|++|+|++.... ....+...+.. ...++ .+++|+|+
T Consensus 105 ~~~~i~~iDTPGh~~------f~~~~~~----~l--~~aD~allVVDa~~G-~~~qt~~~~~l-~~~lg---~~~iIvvv 167 (474)
T PRK05124 105 EKRKFIIADTPGHEQ------YTRNMAT----GA--STCDLAILLIDARKG-VLDQTRRHSFI-ATLLG---IKHLVVAV 167 (474)
T ss_pred CCcEEEEEECCCcHH------HHHHHHH----HH--hhCCEEEEEEECCCC-ccccchHHHHH-HHHhC---CCceEEEE
Confidence 789999999999522 1112222 22 248999999876532 22223333332 23333 36889999
Q ss_pred eccCCC
Q 036930 596 THAASE 601 (1109)
Q Consensus 596 TKaD~l 601 (1109)
||+|..
T Consensus 168 NKiD~~ 173 (474)
T PRK05124 168 NKMDLV 173 (474)
T ss_pred Eeeccc
Confidence 999985
No 231
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.46 E-value=2e-06 Score=100.01 Aligned_cols=115 Identities=17% Similarity=0.143 Sum_probs=71.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceec--------------------------CC-----CCc-eeEEEEEEEEECCE
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTIN--------------------------AF-----EPA-TSSVKVIAGLVHGV 518 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs--------------------------~i-----~pg-TTrv~e~~~~i~G~ 518 (1109)
+||+++|..++|||||++.|+........ +. .-+ |..+......+++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999754321110 00 011 22244556667889
Q ss_pred EEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEecc
Q 036930 519 KIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHA 598 (1109)
Q Consensus 519 ~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKa 598 (1109)
++.||||||..+- ...+.. .+. .+|++|+|++... .....+...+..+. .++ .+++|+|+||+
T Consensus 81 ~~~liDtPGh~~f------~~~~~~----~~~--~aD~allVVda~~-G~~~qt~~~~~~~~-~~~---~~~iivviNK~ 143 (406)
T TIGR02034 81 KFIVADTPGHEQY------TRNMAT----GAS--TADLAVLLVDARK-GVLEQTRRHSYIAS-LLG---IRHVVLAVNKM 143 (406)
T ss_pred EEEEEeCCCHHHH------HHHHHH----HHh--hCCEEEEEEECCC-CCccccHHHHHHHH-HcC---CCcEEEEEEec
Confidence 9999999996321 112222 222 4899999987653 22233444444333 333 35789999999
Q ss_pred CCCC
Q 036930 599 ASEP 602 (1109)
Q Consensus 599 D~l~ 602 (1109)
|...
T Consensus 144 D~~~ 147 (406)
T TIGR02034 144 DLVD 147 (406)
T ss_pred cccc
Confidence 9853
No 232
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.45 E-value=3.7e-06 Score=102.69 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=69.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecC-CCCceeE-EEEEEEE-ECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINA-FEPATSS-VKVIAGL-VHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~-i~pgTTr-v~e~~~~-i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
+.|+++|..++|||||+|+|+|.+...... ...+.|. ....+.. .++..+.||||||..+ ..+.+..
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~----------fi~~m~~ 70 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK----------FLSNMLA 70 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH----------HHHHHHH
Confidence 358899999999999999999864321111 1133332 2222222 2578899999999722 1122222
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+ .++|++++|++++.. ....+...+..+. .++ .+++|||+||+|+.
T Consensus 71 g~--~~~D~~lLVVda~eg-~~~qT~ehl~il~-~lg---i~~iIVVlNKiDlv 117 (614)
T PRK10512 71 GV--GGIDHALLVVACDDG-VMAQTREHLAILQ-LTG---NPMLTVALTKADRV 117 (614)
T ss_pred Hh--hcCCEEEEEEECCCC-CcHHHHHHHHHHH-HcC---CCeEEEEEECCccC
Confidence 22 258999999877642 2233445555443 333 24568999999985
No 233
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=98.44 E-value=1.5e-06 Score=90.09 Aligned_cols=115 Identities=15% Similarity=0.147 Sum_probs=66.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+++|..|||||||++.++... +. ..+.|...........+++ ..+.||||||-.... .+. ..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~-f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~-------~l~---~~ 70 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNA-FP-KEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYD-------RLR---TL 70 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCC-CC-cCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhh-------hhh---hh
Confidence 4799999999999999999998643 21 1111211111122234555 567899999973311 111 11
Q ss_pred HHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++ .++|++++|.+++... +......++..+.... ...|+++|.||.|+.
T Consensus 71 ~~--~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~ 120 (191)
T cd01875 71 SY--PQTNVFIICFSIASPSSYENVRHKWHPEVCHHC---PNVPILLVGTKKDLR 120 (191)
T ss_pred hc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEEeChhhh
Confidence 22 2589999998887532 2110011223333221 247999999999974
No 234
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.44 E-value=3.5e-07 Score=93.49 Aligned_cols=58 Identities=28% Similarity=0.497 Sum_probs=45.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLR 529 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ 529 (1109)
..+++|+++|.+|||||||+|.|++.....++.. ++||. +.... +. ..+.||||||+.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~-~~~T~~~~~~~--~~-~~~~~iDtpG~~ 171 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNK-PGVTKGIQWIK--IS-PGIYLLDTPGIL 171 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCC-CCEEeeeEEEE--ec-CCEEEEECCCCC
Confidence 3457999999999999999999999887677775 66665 43333 22 568899999984
No 235
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.44 E-value=2.1e-06 Score=89.47 Aligned_cols=117 Identities=18% Similarity=0.127 Sum_probs=69.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC--CEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH--GVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~--G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+++|..|||||||+|+|.+......... ..+........... ..++.+|||+|..+- +.+. ..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~-------~~~~---~~y 74 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPP-TIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY-------RSLR---PEY 74 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCC-ceeeeeEEEEEEeCCCEEEEEeecCCCHHHH-------HHHH---HHH
Confidence 7999999999999999999998765332221 11112111111222 467889999998431 1111 111
Q ss_pred HhcCCCcEEEEEecCCC-CCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDT-HTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds-~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
. .+++.+++|.+... ......-..+...+....+ ...++++|.||+|+..
T Consensus 75 ~--~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 75 Y--RGANGILIVYDSTLRESSDELTEEWLEELRELAP--DDVPILLVGNKIDLFD 125 (219)
T ss_pred h--cCCCEEEEEEecccchhhhHHHHHHHHHHHHhCC--CCceEEEEeccccccc
Confidence 1 36899999976665 2222212233334444332 2478999999999865
No 236
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.43 E-value=1.3e-05 Score=94.00 Aligned_cols=119 Identities=18% Similarity=0.257 Sum_probs=71.4
Q ss_pred CcEEEEEecCCCChhHHHHHHh------CCCcceecC--CCCc--------eeEEE-EEEEEE-----------------
Q 036930 470 SLNILVLGKTGVGKSATINSIF------GEEKSTINA--FEPA--------TSSVK-VIAGLV----------------- 515 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLL------G~~va~Vs~--i~pg--------TTrv~-e~~~~i----------------- 515 (1109)
+..|+++|++||||||++..|+ |..+..++. +.++ +.+.. ..+...
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4678899999999999999997 555554433 1111 11110 111100
Q ss_pred -CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEE
Q 036930 516 -HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILC 594 (1109)
Q Consensus 516 -~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVV 594 (1109)
.+..++||||||-.... ...+.++.+......||.++||++... . ......++.+.+. ....-+|
T Consensus 180 ~~~~DvViIDTaGr~~~d------~~lm~El~~i~~~~~p~e~lLVlda~~-G--q~a~~~a~~F~~~-----~~~~g~I 245 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQE------DSLFEEMLQVAEAIQPDNIIFVMDGSI-G--QAAEAQAKAFKDS-----VDVGSVI 245 (429)
T ss_pred hCCCCEEEEECCCCCcch------HHHHHHHHHHhhhcCCcEEEEEecccc-C--hhHHHHHHHHHhc-----cCCcEEE
Confidence 25789999999975432 244555555544456899999965432 1 1233344444332 2456677
Q ss_pred EeccCCCC
Q 036930 595 LTHAASEP 602 (1109)
Q Consensus 595 LTKaD~l~ 602 (1109)
+||.|...
T Consensus 246 lTKlD~~a 253 (429)
T TIGR01425 246 ITKLDGHA 253 (429)
T ss_pred EECccCCC
Confidence 99999864
No 237
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.43 E-value=1.4e-06 Score=105.87 Aligned_cols=112 Identities=19% Similarity=0.196 Sum_probs=71.9
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcc-----eec----CC------CCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchh
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKS-----TIN----AF------EPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRT 536 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va-----~Vs----~i------~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~ 536 (1109)
+|+++|..++|||||+++|+..... .+. +. ...|.........+++.++.||||||..+..
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---- 78 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---- 78 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH----
Confidence 7999999999999999999853211 111 10 1123334455677899999999999985521
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 537 VNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 537 ~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..+ .+.++ .+|++|+|++... ........+++.+... ..|+|||+||+|..
T Consensus 79 --~ev----~~~l~--~aD~alLVVDa~~-G~~~qT~~~l~~a~~~-----~ip~IVviNKiD~~ 129 (594)
T TIGR01394 79 --GEV----ERVLG--MVDGVLLLVDASE-GPMPQTRFVLKKALEL-----GLKPIVVINKIDRP 129 (594)
T ss_pred --HHH----HHHHH--hCCEEEEEEeCCC-CCcHHHHHHHHHHHHC-----CCCEEEEEECCCCC
Confidence 122 23333 3799999977654 2222234455554432 36789999999974
No 238
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.43 E-value=1.5e-06 Score=105.54 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=66.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEE------------------CCEEEEEEeCCCCCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLV------------------HGVKIRIFDTPGLRSP 531 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i------------------~G~~VtLIDTPGL~ds 531 (1109)
..|+++|.+|+|||||+|+|++..... .. ..++|+ +......+ ...+++||||||....
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~-~e-~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAK-RE-AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhcccccc-cc-CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 368999999999999999999875422 11 122333 11111111 0124889999996321
Q ss_pred CcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 532 AIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 532 ~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
. .+ ...... .+|++++|++++.. ........+..+... ..|+|+|+||+|+..
T Consensus 83 ~-------~l---~~~~~~--~aD~~IlVvD~~~g-~~~qt~e~i~~l~~~-----~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 T-------NL---RKRGGA--LADLAILIVDINEG-FKPQTQEALNILRMY-----KTPFVVAANKIDRIP 135 (590)
T ss_pred H-------HH---HHHHHh--hCCEEEEEEECCcC-CCHhHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 1 11 111222 48999999887642 222344455544332 368999999999863
No 239
>PRK12288 GTPase RsgA; Reviewed
Probab=98.42 E-value=6e-07 Score=102.69 Aligned_cols=59 Identities=27% Similarity=0.490 Sum_probs=42.8
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCC------ceeE-EEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEP------ATSS-VKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~p------gTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
.++|+|.||||||||||+|++.....++.+.. .||+ ...+... .| ..||||||++.-..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~-~~--~~liDTPGir~~~l 272 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP-HG--GDLIDSPGVREFGL 272 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec-CC--CEEEECCCCCcccC
Confidence 37899999999999999999998888877522 2554 3322221 22 24999999988654
No 240
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=98.42 E-value=1.3e-06 Score=86.26 Aligned_cols=115 Identities=19% Similarity=0.215 Sum_probs=70.6
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCce-eEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPAT-SSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT-Trv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
||+++|..|||||||++.+.+..- . ..+.+.. .........+++ ..+.||||+|.... ..+. ..+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-------~~~~---~~~ 68 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEF-P-ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERF-------DSLR---DIF 68 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSST-T-SSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGG-------HHHH---HHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhcc-c-cccccccccccccccccccccccccccccccccccc-------cccc---ccc
Confidence 799999999999999999987542 2 1221211 123344445555 45889999985321 1111 112
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ +.|++++|.+++....-..-..++..+..... ...|++||.||.|...
T Consensus 69 ~~--~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 69 YR--NSDAIIIVFDVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HT--TESEEEEEEETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGG
T ss_pred cc--cccccccccccccccccccccccccccccccc--ccccceeeeccccccc
Confidence 22 48999999887753211112345555555544 2368999999999754
No 241
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.41 E-value=8.9e-07 Score=101.54 Aligned_cols=58 Identities=31% Similarity=0.508 Sum_probs=44.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCC-----cceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEE-----KSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSP 531 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~-----va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds 531 (1109)
+.+|+++|.||||||||||+|++.. .+.++.. |+||+ .... .+ +..+.|+||||+...
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~-pgtT~~~~~~--~~-~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPF-PGTTLDLIEI--PL-DDGHSLYDTPGIINS 217 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCC-CCeEeeEEEE--Ee-CCCCEEEECCCCCCh
Confidence 4699999999999999999999864 3456665 89887 3332 33 234679999999875
No 242
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.41 E-value=8.6e-07 Score=96.38 Aligned_cols=187 Identities=17% Similarity=0.149 Sum_probs=96.2
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEE-ECCEEEEEEeCCCCCCCCcch-hhhHHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGL-VHGVKIRIFDTPGLRSPAIGR-TVNKKTLASIRKSI 549 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~-i~G~~VtLIDTPGL~ds~~~~-~~~eeIl~~Ikk~L 549 (1109)
||+|+|+.|+||||..+.|++.....-...-..|+++...... ....++.+||.||-....... ... ....+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~------~~~if 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQ------REEIF 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCC------HHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccccccc------HHHHH
Confidence 7999999999999999999987543322322456666555554 356799999999986532110 000 11122
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcH-HHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCCCCCccHHHHHhhcHHHHHHHH
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDL-PLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRI 628 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~-~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~~~p~sieefV~q~~~~LQelI 628 (1109)
+ ..++++||+++....... +. .+...+......+..-++-|++.|+|++.++. -.+...+....+.+.+
T Consensus 75 ~--~v~~LIyV~D~qs~~~~~-~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~-------r~~~~~~~~~~i~~~~ 144 (232)
T PF04670_consen 75 S--NVGVLIYVFDAQSDDYDE-DLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDE-------REEIFRDIQQRIRDEL 144 (232)
T ss_dssp C--TESEEEEEEETT-STCHH-HHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHH-------HHHHHHHHHHHHHHHH
T ss_pred h--ccCEEEEEEEcccccHHH-HHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHH-------HHHHHHHHHHHHHHHh
Confidence 2 378999998776433322 22 22233333322233467888899999875321 1111222333344444
Q ss_pred HHHhC-CCceeccCCCCHHHHHhhHHHHHhccccceecCCCCCchhhhhHHHH
Q 036930 629 SQAIG-DPHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCF 680 (1109)
Q Consensus 629 ~qc~g-r~~lfn~s~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~LllLcy 680 (1109)
..... +...+.++... ..|.+++..+. +...|+-..+...|-.+|-
T Consensus 145 ~~~~~~~~~~~~TSI~D-~Sly~A~S~Iv-----q~LiP~~~~le~~L~~~~~ 191 (232)
T PF04670_consen 145 EDLGIEDITFFLTSIWD-ESLYEAWSKIV-----QKLIPNLSTLENLLNNFCS 191 (232)
T ss_dssp HHTT-TSEEEEEE-TTS-THHHHHHHHHH-----HTTSTTHCCCCCCCCHHHC
T ss_pred hhccccceEEEeccCcC-cHHHHHHHHHH-----HHHcccHHHHHHHHHHHHH
Confidence 43332 24455565543 57777765543 3445665555445544444
No 243
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=98.40 E-value=4.6e-06 Score=84.29 Aligned_cols=110 Identities=22% Similarity=0.159 Sum_probs=66.6
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+|+|.+|||||||++.++... +. ..+.| |.........++| ..+.++||+|.... .+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~-f~-~~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~~---------------~~ 62 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGS-YV-QLESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPDA---------------QF 62 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCC-CC-CCCCC-CccceEEEEEECCEEEEEEEEECCCCCch---------------hH
Confidence 489999999999999999876542 11 11212 1111123455677 55889999998431 11
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+ .+|++++|.+++....-..-..++..+..... ....|+++|.||.|+.
T Consensus 63 ~~--~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~ 112 (158)
T cd04103 63 AS--WVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS 112 (158)
T ss_pred Hh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence 11 37999999887753211111234444444322 1236899999999863
No 244
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=98.39 E-value=2.7e-06 Score=88.08 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=69.2
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+++|.+|||||||+..++... +.. .+.|...........+++ .++.+|||+|...... +. ..+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~-f~~-~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~-------~~---~~~ 69 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNK-FPT-DYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNR-------LR---PLS 69 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC-CCC-CCCCcceeeeEEEEEECCEEEEEEEEECCCCccccc-------cc---hhh
Confidence 589999999999999999999643 321 222221112222344555 6678999999744221 11 112
Q ss_pred HhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ ++|++|+|.+++... +......++..+.... ...++|+|-||+|+.+
T Consensus 70 ~~--~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~---~~~piilvgnK~Dl~~ 119 (176)
T cd04133 70 YR--GADVFVLAFSLISRASYENVLKKWVPELRHYA---PNVPIVLVGTKLDLRD 119 (176)
T ss_pred cC--CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEeChhhcc
Confidence 22 589999998887532 2110012344444332 2478999999999853
No 245
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=98.39 E-value=1.1e-06 Score=90.57 Aligned_cols=114 Identities=17% Similarity=0.167 Sum_probs=66.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
.+|+|+|++|+|||||+|.|+..... ..+.+.+.........+.+ ..+.++||||...... + .. ..
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~-------~-~~--~~ 69 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER-------L-RP--LS 69 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhccc-------c-ch--hh
Confidence 58999999999999999999843321 1221221111122334455 4578999999754221 0 00 01
Q ss_pred HhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+ ..+|++++|.+++... +......++..+..... ..|+|+|.||+|+.
T Consensus 70 ~--~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~---~~piilvgnK~Dl~ 118 (187)
T cd04129 70 Y--SKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP---NVPVILVGLKKDLR 118 (187)
T ss_pred c--CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEeeChhhh
Confidence 1 2479999998776532 11101123444444332 37999999999974
No 246
>PRK10218 GTP-binding protein; Provisional
Probab=98.39 E-value=2.3e-06 Score=104.22 Aligned_cols=113 Identities=17% Similarity=0.115 Sum_probs=72.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCccee---------cCC-----CCcee-EEEEEEEEECCEEEEEEeCCCCCCCCcch
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTI---------NAF-----EPATS-SVKVIAGLVHGVKIRIFDTPGLRSPAIGR 535 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~V---------s~i-----~pgTT-rv~e~~~~i~G~~VtLIDTPGL~ds~~~~ 535 (1109)
-+|+++|..++|||||+++|+....... .+. ..+.| ........+++.++.+|||||..+...
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~-- 83 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG-- 83 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH--
Confidence 4799999999999999999996322110 010 12222 244556678899999999999865321
Q ss_pred hhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 536 TVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 536 ~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+ ..+++ .+|++++|++.... .......+++.+... ..|.|+|+||+|..
T Consensus 84 ----~v----~~~l~--~aDg~ILVVDa~~G-~~~qt~~~l~~a~~~-----gip~IVviNKiD~~ 133 (607)
T PRK10218 84 ----EV----ERVMS--MVDSVLLVVDAFDG-PMPQTRFVTKKAFAY-----GLKPIVVINKVDRP 133 (607)
T ss_pred ----HH----HHHHH--hCCEEEEEEecccC-ccHHHHHHHHHHHHc-----CCCEEEEEECcCCC
Confidence 12 22232 38999999776542 222244455544332 36789999999974
No 247
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.38 E-value=5.4e-06 Score=99.70 Aligned_cols=115 Identities=11% Similarity=0.145 Sum_probs=70.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcc--e---e----------cCCCC------ceeEEEEEEEEECCEEEEEEeCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKS--T---I----------NAFEP------ATSSVKVIAGLVHGVKIRIFDTPG 527 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va--~---V----------s~i~p------gTTrv~e~~~~i~G~~VtLIDTPG 527 (1109)
.-.+|+|+|.+|+|||||+++|+-...+ . + .++.+ .|.........+++.++.||||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 3469999999999999999998632111 1 1 11100 111123345677899999999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 528 LRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 528 L~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..+.. ..+. +++. .+|++|+|++... ........+++.+.. ...|+|+++||+|..
T Consensus 90 ~~df~------~~~~----~~l~--~aD~aIlVvDa~~-gv~~~t~~l~~~~~~-----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 90 HEDFS------EDTY----RTLT--AVDNCLMVIDAAK-GVETRTRKLMEVTRL-----RDTPIFTFMNKLDRD 145 (527)
T ss_pred hhhHH------HHHH----HHHH--hCCEEEEEEECCC-CCCHHHHHHHHHHHh-----cCCCEEEEEECcccc
Confidence 85321 1222 2333 3899999977654 222222334443322 247899999999974
No 248
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.37 E-value=1.6e-05 Score=94.69 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=22.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+-.|+|||++||||||++..|++.
T Consensus 253 ~~~g~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 253 LDRGGVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred ccCCcEEEEECCCCccHHHHHHHHHHH
Confidence 345667889999999999999999864
No 249
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.37 E-value=6.6e-07 Score=97.51 Aligned_cols=59 Identities=32% Similarity=0.435 Sum_probs=43.1
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCC------CceeE-EEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFE------PATSS-VKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~------pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
-.++++|++|||||||||+|++.....++.+. ..||+ ...+.. .+ -.||||||+.....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~~~l 186 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNEFGL 186 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccccCC
Confidence 37889999999999999999998776665531 22665 444333 33 27999999988654
No 250
>PRK12289 GTPase RsgA; Reviewed
Probab=98.35 E-value=6.3e-07 Score=102.73 Aligned_cols=59 Identities=29% Similarity=0.455 Sum_probs=43.5
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCc-------eeEEEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPA-------TSSVKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pg-------TTrv~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
.++|+|+||||||||||+|++.....++.+ ++ ||+........+|. .||||||+.....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~v-s~~~~rGrHTT~~~~l~~l~~g~--~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKV-SGKLGRGRHTTRHVELFELPNGG--LLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccc-cCCCCCCCCcCceeEEEECCCCc--EEEeCCCcccccc
Confidence 479999999999999999999888887775 44 66532222111232 7999999987553
No 251
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=98.35 E-value=1.4e-06 Score=89.45 Aligned_cols=115 Identities=18% Similarity=0.184 Sum_probs=73.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
+...+|+++|..|+||||+++.|.......+ ..|.........+.+..+.++|.+|-.... . . -+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~----~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~--~-~-------w~~ 77 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISET----IPTIGFNIEEIKYKGYSLTIWDLGGQESFR--P-L-------WKS 77 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEE----EEESSEEEEEEEETTEEEEEEEESSSGGGG--G-G-------GGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccccc----CcccccccceeeeCcEEEEEEecccccccc--c-c-------cee
Confidence 4568999999999999999999997543222 123334455666789999999999853211 1 0 111
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l 601 (1109)
++. .+|+++||++...... -....+.+...+.. ....|++|++||.|..
T Consensus 78 y~~--~~~~iIfVvDssd~~~---l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~ 128 (175)
T PF00025_consen 78 YFQ--NADGIIFVVDSSDPER---LQEAKEELKELLNDPELKDIPILILANKQDLP 128 (175)
T ss_dssp GHT--TESEEEEEEETTGGGG---HHHHHHHHHHHHTSGGGTTSEEEEEEESTTST
T ss_pred ecc--ccceeEEEEeccccee---ecccccchhhhcchhhcccceEEEEecccccc
Confidence 222 4799999976654321 12223333333332 1247999999999974
No 252
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.34 E-value=3.2e-07 Score=94.71 Aligned_cols=61 Identities=31% Similarity=0.412 Sum_probs=35.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCC------CceeEEEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFE------PATSSVKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~------pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
-.++|+|++|||||||||+|++.....++.+. -.||+... ...+. ....|||||||.+...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~-l~~l~-~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRE-LFPLP-DGGYIIDTPGFRSFGL 102 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEE-EEEET-TSEEEECSHHHHT--G
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCee-EEecC-CCcEEEECCCCCcccc
Confidence 47899999999999999999998766655431 22444222 22231 1347999999988654
No 253
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.32 E-value=3.6e-06 Score=88.52 Aligned_cols=116 Identities=11% Similarity=0.096 Sum_probs=63.5
Q ss_pred CCcEEEEEecCCCChhHHHHHH-hCCCcceecCCCCceeEEEEEEEEE--CCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSI-FGEEKSTINAFEPATSSVKVIAGLV--HGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaL-LG~~va~Vs~i~pgTTrv~e~~~~i--~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..++|+|+|++|||||||++.+ .|........ ..+. .+....... ....+.+|||||..... .+.
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~-t~~~-~~~~~~~~~~~~~i~i~~~Dt~g~~~~~-------~~~--- 75 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIP-TLGV-EVHPLKFYTNCGPICFNVWDTAGQEKFG-------GLR--- 75 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCC-ccce-EEEEEEEEECCeEEEEEEEECCCchhhh-------hhh---
Confidence 4589999999999999999754 4543211111 0111 122222222 34778899999963211 111
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..+.. ..+++++|.+++....-..-..++..+..... ..++++|.||+|..
T Consensus 76 ~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~i~lv~nK~Dl~ 126 (215)
T PTZ00132 76 DGYYI--KGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE---NIPIVLVGNKVDVK 126 (215)
T ss_pred HHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccCc
Confidence 11222 47899999777642110011123333333321 35788899999974
No 254
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.32 E-value=7.2e-06 Score=101.63 Aligned_cols=122 Identities=12% Similarity=0.084 Sum_probs=69.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcc-----eecCCCCceeEEE------------EEEE--------------EECC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKS-----TINAFEPATSSVK------------VIAG--------------LVHG 517 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va-----~Vs~i~pgTTrv~------------e~~~--------------~i~G 517 (1109)
.+-.|+|||++||||||++..|++.... +|.-+...|.++- .... ...+
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~ 263 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGD 263 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcC
Confidence 4556789999999999999999875321 2221111121100 0000 1234
Q ss_pred EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCC-CCeEEEEEe
Q 036930 518 VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSV-WQNAILCLT 596 (1109)
Q Consensus 518 ~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v-~k~vIVVLT 596 (1109)
..++||||||..... ..+++.+........++-+++|++.+. ....++.+.+.|.... ....=+|||
T Consensus 264 ~D~VLIDTAGRs~~d------~~l~eel~~l~~~~~p~e~~LVLsAt~------~~~~l~~i~~~f~~~~~~~i~glIlT 331 (767)
T PRK14723 264 KHLVLIDTVGMSQRD------RNVSEQIAMLCGVGRPVRRLLLLNAAS------HGDTLNEVVHAYRHGAGEDVDGCIIT 331 (767)
T ss_pred CCEEEEeCCCCCccC------HHHHHHHHHHhccCCCCeEEEEECCCC------cHHHHHHHHHHHhhcccCCCCEEEEe
Confidence 678999999986643 234444544333345788888866543 2234555555554211 122335599
Q ss_pred ccCCCC
Q 036930 597 HAASEP 602 (1109)
Q Consensus 597 KaD~l~ 602 (1109)
|.|...
T Consensus 332 KLDEt~ 337 (767)
T PRK14723 332 KLDEAT 337 (767)
T ss_pred ccCCCC
Confidence 999864
No 255
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.31 E-value=3.8e-06 Score=97.47 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=67.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc---ceecCCCCceeE---------------EEEEEE--------------EEC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK---STINAFEPATSS---------------VKVIAG--------------LVH 516 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v---a~Vs~i~pgTTr---------------v~e~~~--------------~i~ 516 (1109)
.+..|+|+|++||||||++..|+..-. ..+.-+...|.| +..... ...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 456899999999999999999974211 111111111111 000000 001
Q ss_pred CEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEe
Q 036930 517 GVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLT 596 (1109)
Q Consensus 517 G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLT 596 (1109)
+..++||||||-.... ...+..+.+.+....+|.++||++.+... .-+..+.+.|....... ++||
T Consensus 320 ~~DvVLIDTaGRs~kd------~~lm~EL~~~lk~~~PdevlLVLsATtk~------~d~~~i~~~F~~~~idg--lI~T 385 (436)
T PRK11889 320 RVDYILIDTAGKNYRA------SETVEEMIETMGQVEPDYICLTLSASMKS------KDMIEIITNFKDIHIDG--IVFT 385 (436)
T ss_pred CCCEEEEeCccccCcC------HHHHHHHHHHHhhcCCCeEEEEECCccCh------HHHHHHHHHhcCCCCCE--EEEE
Confidence 3579999999986532 23444555656555688889996554322 12334555555422233 4599
Q ss_pred ccCCCC
Q 036930 597 HAASEP 602 (1109)
Q Consensus 597 KaD~l~ 602 (1109)
|.|...
T Consensus 386 KLDET~ 391 (436)
T PRK11889 386 KFDETA 391 (436)
T ss_pred cccCCC
Confidence 999864
No 256
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.31 E-value=3e-06 Score=93.62 Aligned_cols=126 Identities=16% Similarity=0.120 Sum_probs=77.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcc-eecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKS-TINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va-~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
+...+++++|.+|||||||||.|+..... ..+...++-|+++..+ .-|..+++||.||++................+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f--~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~ 211 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF--HVGKSWYEVDLPGYGRAGYGFELPADWDKFTK 211 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee--eccceEEEEecCCcccccCCccCcchHhHhHH
Confidence 44579999999999999999999976543 2222246666654433 23788999999996543321111222222233
Q ss_pred HHHhc--CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKK--FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~--~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++.+ .-.-++|+|. . ...+...|...+.++-+. ..|+.+||||||...
T Consensus 212 ~Y~leR~nLv~~FLLvd-~-sv~i~~~D~~~i~~~ge~-----~VP~t~vfTK~DK~k 262 (320)
T KOG2486|consen 212 SYLLERENLVRVFLLVD-A-SVPIQPTDNPEIAWLGEN-----NVPMTSVFTKCDKQK 262 (320)
T ss_pred HHHHhhhhhheeeeeee-c-cCCCCCCChHHHHHHhhc-----CCCeEEeeehhhhhh
Confidence 33221 1245666662 2 234445577777776554 478999999999753
No 257
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.31 E-value=9.4e-06 Score=94.49 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=67.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecC-CCCcee-EEEE------------------EE--------EEECCEEE
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINA-FEPATS-SVKV------------------IA--------GLVHGVKI 520 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~-i~pgTT-rv~e------------------~~--------~~i~G~~V 520 (1109)
..++|+++|..++|||||+++|.+........ ...+.| .+.. .. ....++.+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46899999999999999999998742210000 001111 1000 00 00125789
Q ss_pred EEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCC
Q 036930 521 RIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAAS 600 (1109)
Q Consensus 521 tLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~ 600 (1109)
.||||||..+ ....+. ..+. .+|++++|++.+...........+..+ ..++ .+++++|+||+|+
T Consensus 83 ~liDtPGh~~------f~~~~~----~g~~--~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g---i~~iIVvvNK~Dl 146 (406)
T TIGR03680 83 SFVDAPGHET------LMATML----SGAA--LMDGALLVIAANEPCPQPQTKEHLMAL-EIIG---IKNIVIVQNKIDL 146 (406)
T ss_pred EEEECCCHHH------HHHHHH----HHHH--HCCEEEEEEECCCCccccchHHHHHHH-HHcC---CCeEEEEEEcccc
Confidence 9999999632 111222 2222 379999998876422122234444433 3333 3678999999998
Q ss_pred CC
Q 036930 601 EP 602 (1109)
Q Consensus 601 l~ 602 (1109)
..
T Consensus 147 ~~ 148 (406)
T TIGR03680 147 VS 148 (406)
T ss_pred CC
Confidence 54
No 258
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.29 E-value=5.4e-06 Score=99.68 Aligned_cols=115 Identities=11% Similarity=0.113 Sum_probs=70.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcc--ee-------------cCCCC------ceeEEEEEEEEECCEEEEEEeCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKS--TI-------------NAFEP------ATSSVKVIAGLVHGVKIRIFDTPG 527 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va--~V-------------s~i~p------gTTrv~e~~~~i~G~~VtLIDTPG 527 (1109)
.-.+|+|+|.+|+|||||+++|+..... .. .++.+ .|.........+++.++.||||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 3458999999999999999999732111 11 11100 011122345677899999999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 528 LRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 528 L~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..+.. ..+.. .+. .+|++++|++.... .......+++.... ...|+|+++||+|..
T Consensus 89 ~~df~------~~~~~----~l~--~aD~aIlVvDa~~g-v~~~t~~l~~~~~~-----~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 89 HEDFS------EDTYR----TLT--AVDSALMVIDAAKG-VEPQTRKLMEVCRL-----RDTPIFTFINKLDRD 144 (526)
T ss_pred chhhH------HHHHH----HHH--HCCEEEEEEecCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECCccc
Confidence 85421 12222 232 37999999776542 22222334443322 147899999999974
No 259
>PLN00023 GTP-binding protein; Provisional
Probab=98.29 E-value=5.8e-06 Score=94.00 Aligned_cols=120 Identities=18% Similarity=0.144 Sum_probs=69.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEEC---------------CEEEEEEeCCCCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVH---------------GVKIRIFDTPGLRS 530 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i~---------------G~~VtLIDTPGL~d 530 (1109)
-..+||+|+|..|||||||++.+++... .. .+ ..|.- +......++ ...+.||||+|-..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F-~~-~~-~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSS-IA-RP-PQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCc-cc-cc-CCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 3458999999999999999999997542 11 11 11211 111112221 25688999999733
Q ss_pred CCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC----------CCCCeEEEEEeccCC
Q 036930 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS----------SVWQNAILCLTHAAS 600 (1109)
Q Consensus 531 s~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~----------~v~k~vIVVLTKaD~ 600 (1109)
.. .+ ...+++ +++++|+|.+++....-..-..+++.|...... ....++|||.||+|+
T Consensus 96 fr-------sL---~~~yyr--~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL 163 (334)
T PLN00023 96 YK-------DC---RSLFYS--QINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADI 163 (334)
T ss_pred hh-------hh---hHHhcc--CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccc
Confidence 11 11 112232 589999998887532111112344445443210 013589999999998
Q ss_pred CC
Q 036930 601 EP 602 (1109)
Q Consensus 601 l~ 602 (1109)
..
T Consensus 164 ~~ 165 (334)
T PLN00023 164 AP 165 (334)
T ss_pred cc
Confidence 54
No 260
>PRK13351 elongation factor G; Reviewed
Probab=98.28 E-value=4.6e-06 Score=102.94 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=71.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcc--eec---------CC------CCceeEEEEEEEEECCEEEEEEeCCCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKS--TIN---------AF------EPATSSVKVIAGLVHGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va--~Vs---------~i------~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~ 532 (1109)
-.+|+|+|..|+|||||++.|+..... ..+ ++ ...|.........+++..+.||||||..+..
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 358999999999999999999853211 011 10 0112223334567789999999999985421
Q ss_pred cchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 533 IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 533 ~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..+ ..++. .+|++++|++.+.. .......+++.+... ..|+++|+||+|...
T Consensus 88 ------~~~----~~~l~--~aD~~ilVvd~~~~-~~~~~~~~~~~~~~~-----~~p~iiviNK~D~~~ 139 (687)
T PRK13351 88 ------GEV----ERSLR--VLDGAVVVFDAVTG-VQPQTETVWRQADRY-----GIPRLIFINKMDRVG 139 (687)
T ss_pred ------HHH----HHHHH--hCCEEEEEEeCCCC-CCHHHHHHHHHHHhc-----CCCEEEEEECCCCCC
Confidence 112 22333 37999999776542 222233445444332 378999999999753
No 261
>PTZ00416 elongation factor 2; Provisional
Probab=98.28 E-value=4.7e-06 Score=105.04 Aligned_cols=112 Identities=14% Similarity=0.148 Sum_probs=72.2
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE----------------EEEEEEEEC----------CEEEEEEe
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS----------------VKVIAGLVH----------GVKIRIFD 524 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr----------------v~e~~~~i~----------G~~VtLID 524 (1109)
.+|+++|..++|||||+++|+......... ..++++ .......+. +..+.|||
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~-~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSK-NAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccc-cCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 489999999999999999999754322111 122221 111122332 67799999
Q ss_pred CCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 525 TPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 525 TPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
|||..+.. .. +...+. .+|++++|++... ........+++.+... ..|+|+++||+|..
T Consensus 99 tPG~~~f~------~~----~~~al~--~~D~ailVvda~~-g~~~~t~~~~~~~~~~-----~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 99 SPGHVDFS------SE----VTAALR--VTDGALVVVDCVE-GVCVQTETVLRQALQE-----RIRPVLFINKVDRA 157 (836)
T ss_pred CCCHHhHH------HH----HHHHHh--cCCeEEEEEECCC-CcCccHHHHHHHHHHc-----CCCEEEEEEChhhh
Confidence 99996621 12 223333 3899999977653 3444456677766553 36899999999986
No 262
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.27 E-value=4.8e-06 Score=101.42 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=65.6
Q ss_pred EEEEEecCCCChhHHHHHHhCCCccee--------cCC-----CCcee-EEEEEEEEE---CC--EEEEEEeCCCCCCCC
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTI--------NAF-----EPATS-SVKVIAGLV---HG--VKIRIFDTPGLRSPA 532 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~V--------s~i-----~pgTT-rv~e~~~~i---~G--~~VtLIDTPGL~ds~ 532 (1109)
+|+++|..++|||||++.|+....... .+. ..+.| ........+ ++ ..+.||||||..+..
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 799999999999999999986432111 110 01222 222233333 23 788999999996521
Q ss_pred cchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 533 IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 533 ~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..+ .+++. .+|++|+|++++.. ........+..... ...++|+|+||+|+.
T Consensus 85 ------~~v----~~~l~--~aD~aILVvDat~g-~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~ 135 (595)
T TIGR01393 85 ------YEV----SRSLA--ACEGALLLVDAAQG-IEAQTLANVYLALE-----NDLEIIPVINKIDLP 135 (595)
T ss_pred ------HHH----HHHHH--hCCEEEEEecCCCC-CCHhHHHHHHHHHH-----cCCCEEEEEECcCCC
Confidence 122 22333 37999999776542 11112222222222 135899999999974
No 263
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.26 E-value=6.6e-06 Score=100.09 Aligned_cols=112 Identities=14% Similarity=0.205 Sum_probs=65.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEE------CC------------EEEEEEeCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLV------HG------------VKIRIFDTPGLRS 530 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i------~G------------~~VtLIDTPGL~d 530 (1109)
+..|+++|.+|+|||||+|+|.+.......+ .+.|+ +......+ .+ ..++||||||...
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~--g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKEA--GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCCC--CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3469999999999999999998875432111 12221 11000000 01 1278999999854
Q ss_pred CCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 531 s~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.. .+. .+.+. .+|++++|++++.. ........+..+... ..|+++|+||+|..
T Consensus 84 f~-------~~~---~~~~~--~aD~~IlVvDa~~g-~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~ 136 (586)
T PRK04004 84 FT-------NLR---KRGGA--LADIAILVVDINEG-FQPQTIEAINILKRR-----KTPFVVAANKIDRI 136 (586)
T ss_pred HH-------HHH---HHhHh--hCCEEEEEEECCCC-CCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence 21 111 11122 37999999877642 223344455544332 46899999999975
No 264
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.25 E-value=2.7e-06 Score=85.12 Aligned_cols=57 Identities=28% Similarity=0.390 Sum_probs=43.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGL 528 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL 528 (1109)
...+|+++|.+|+||||++|.|++.....+++. +++|+... .... +..+.||||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~-~~~t~~~~-~~~~-~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPS-PGYTKGEQ-LVKI-TSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeeeeeE-EEEc-CCCEEEEECcCC
Confidence 457899999999999999999999877777775 56654211 2222 347899999996
No 265
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.25 E-value=6e-06 Score=102.58 Aligned_cols=115 Identities=13% Similarity=0.083 Sum_probs=70.2
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcc---------eecCCC-----CceeE-EE----EEEEEECCEEEEEEeCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKS---------TINAFE-----PATSS-VK----VIAGLVHGVKIRIFDTPGLRS 530 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va---------~Vs~i~-----pgTTr-v~----e~~~~i~G~~VtLIDTPGL~d 530 (1109)
-.+|+++|..++|||||++.|+..... .+.++. .++|. .. .....+++.++.||||||..+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 369999999999999999999742110 111111 11121 11 112456788999999999976
Q ss_pred CCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 531 s~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.. ..+.. .+. .+|++|+|++... ........+++.+... ..+.++|+||+|...
T Consensus 99 f~------~~~~~----al~--~aD~~llVvda~~-g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 99 FG------GDVTR----AMR--AVDGAIVVVCAVE-GVMPQTETVLRQALKE-----NVKPVLFINKVDRLI 152 (720)
T ss_pred cH------HHHHH----HHH--hcCEEEEEEecCC-CCCccHHHHHHHHHHc-----CCCEEEEEEChhccc
Confidence 22 12222 232 3799999977643 2233344555544332 357789999999864
No 266
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=3.3e-05 Score=89.52 Aligned_cols=174 Identities=16% Similarity=0.142 Sum_probs=91.3
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHhhhc-----ccccCCCcEEEEEecCCCChhH
Q 036930 411 KFLRLVQRLGHSFDDSVVAQVLYRLALALGGHSSQAVSIEAAKRVAEQHEIED-----KDDMDFSLNILVLGKTGVGKSA 485 (1109)
Q Consensus 411 kLLrLlarLgaspEddlvaqVL~rl~~a~~~~~~~~~~le~a~~~a~qlla~~-----~e~L~~gLrIaLVGkTGVGKSS 485 (1109)
.|.+.+.+.|+.++ ++..++.++... ...........++..+.+.+... .-.+..+-.|+++|++||||||
T Consensus 146 ~~~~~L~~~gV~~~--~~~~l~~~~~~~--~~~~~~~~~~~v~~~~~~~L~~~l~~~~~~~~~~~~ii~lvGptGvGKTT 221 (407)
T PRK12726 146 DFVKFLKGRGISDT--YVADFMQAGRKQ--FKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVGKTT 221 (407)
T ss_pred HHHHHHHHcCCCHH--HHHHHHHHHHHh--ccccccccHHHHHHHHHHHhcCcEeeCCCceecCCeEEEEECCCCCCHHH
Confidence 35666666666543 444444444321 01111112355666666666531 1124455678899999999999
Q ss_pred HHHHHhCC------CcceecC--CCCce------eE-EE--EEEEE---------------ECCEEEEEEeCCCCCCCCc
Q 036930 486 TINSIFGE------EKSTINA--FEPAT------SS-VK--VIAGL---------------VHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 486 LINaLLG~------~va~Vs~--i~pgT------Tr-v~--e~~~~---------------i~G~~VtLIDTPGL~ds~~ 533 (1109)
++..|+.. .+..++. +.++. .. .. ..+.. ..+..++||||||.....
T Consensus 222 t~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d- 300 (407)
T PRK12726 222 TLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLA- 300 (407)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccC-
Confidence 99998742 2222211 11111 00 00 00100 024688999999996532
Q ss_pred chhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 534 GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 534 ~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...+..+..+.....+|.+++|++... . ...+.+ +...|..- ...-+||||.|...
T Consensus 301 -----~~~l~EL~~l~~~~~p~~~~LVLsag~---~--~~d~~~-i~~~f~~l--~i~glI~TKLDET~ 356 (407)
T PRK12726 301 -----EESVSEISAYTDVVHPDLTCFTFSSGM---K--SADVMT-ILPKLAEI--PIDGFIITKMDETT 356 (407)
T ss_pred -----HHHHHHHHHHhhccCCceEEEECCCcc---c--HHHHHH-HHHhcCcC--CCCEEEEEcccCCC
Confidence 344555555555556888888854422 1 223333 33335432 33445699999854
No 267
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=2.2e-05 Score=91.28 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=64.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc-------ceecCCCCceeE----------EE----EEE------------EEE
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK-------STINAFEPATSS----------VK----VIA------------GLV 515 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v-------a~Vs~i~pgTTr----------v~----e~~------------~~i 515 (1109)
.+..|+++|+|||||||++..|+..-. ..|.-+...|.| .. ... ...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 356788999999999999999874211 112111011100 00 000 012
Q ss_pred CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCC-cEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEE
Q 036930 516 HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPP-DVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILC 594 (1109)
Q Consensus 516 ~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gp-DVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVV 594 (1109)
.+..++||||||..... ...+..+++.+....+ +-+++|++.+... ..+..+...|....... ++
T Consensus 253 ~~~DlVLIDTaGr~~~~------~~~l~el~~~l~~~~~~~e~~LVlsat~~~------~~~~~~~~~~~~~~~~~--~I 318 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKD------FMKLAEMKELLNACGRDAEFHLAVSSTTKT------SDVKEIFHQFSPFSYKT--VI 318 (388)
T ss_pred CCCCEEEEcCCCCCccC------HHHHHHHHHHHHhcCCCCeEEEEEcCCCCH------HHHHHHHHHhcCCCCCE--EE
Confidence 45779999999986532 1224444555554443 3577886655421 22334444444322334 45
Q ss_pred EeccCCCC
Q 036930 595 LTHAASEP 602 (1109)
Q Consensus 595 LTKaD~l~ 602 (1109)
|||.|...
T Consensus 319 ~TKlDet~ 326 (388)
T PRK12723 319 FTKLDETT 326 (388)
T ss_pred EEeccCCC
Confidence 99999854
No 268
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=3.4e-06 Score=96.60 Aligned_cols=87 Identities=28% Similarity=0.330 Sum_probs=63.7
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEE------------------CCEEEEEEeCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLV------------------HGVKIRIFDTPGLRS 530 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i------------------~G~~VtLIDTPGL~d 530 (1109)
.+++.|||.||||||||+|+|+... +.+..| |.||- .......+ -..+|.|||.+||-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNY-PF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANY-PFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCC-CcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 5789999999999999999999887 677777 66664 43332221 125688999999987
Q ss_pred CCcc-hhhhHHHHHHHHHHHhcCCCcEEEEEecCC
Q 036930 531 PAIG-RTVNKKTLASIRKSIKKFPPDVVLYVDRLD 564 (1109)
Q Consensus 531 s~~~-~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrld 564 (1109)
.+.. .....+.+..|+. +|+|+.|++..
T Consensus 80 GAs~GeGLGNkFL~~IRe------vdaI~hVVr~f 108 (372)
T COG0012 80 GASKGEGLGNKFLDNIRE------VDAIIHVVRCF 108 (372)
T ss_pred CcccCCCcchHHHHhhhh------cCeEEEEEEec
Confidence 6532 2455566666653 89999997654
No 269
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.22 E-value=1.6e-05 Score=93.99 Aligned_cols=117 Identities=18% Similarity=0.222 Sum_probs=71.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcc------------------------eecCC-----CCcee-EEEEEEEEECC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKS------------------------TINAF-----EPATS-SVKVIAGLVHG 517 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va------------------------~Vs~i-----~pgTT-rv~e~~~~i~G 517 (1109)
...++|+++|..++|||||+..|+..... .+.+. ..+.| .+......+++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 34689999999999999999998742110 00110 12333 34455567789
Q ss_pred EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCC------CCCcHHHHHHHHhhhCCCCCCeE
Q 036930 518 VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTR------DHNDLPLLKSLTSSLGSSVWQNA 591 (1109)
Q Consensus 518 ~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~------d~eD~~lLk~I~e~FG~~v~k~v 591 (1109)
+.++||||||..+ ....+...+. .+|++++|++....-+ .....+.+..+. .+| .+++
T Consensus 85 ~~i~lIDtPGh~~----------f~~~~~~g~~--~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~-~~g---i~~i 148 (446)
T PTZ00141 85 YYFTIIDAPGHRD----------FIKNMITGTS--QADVAILVVASTAGEFEAGISKDGQTREHALLAF-TLG---VKQM 148 (446)
T ss_pred eEEEEEECCChHH----------HHHHHHHhhh--hcCEEEEEEEcCCCceecccCCCccHHHHHHHHH-HcC---CCeE
Confidence 9999999999643 1112222222 4899999977664211 122334444333 233 3568
Q ss_pred EEEEeccCC
Q 036930 592 ILCLTHAAS 600 (1109)
Q Consensus 592 IVVLTKaD~ 600 (1109)
||++||+|.
T Consensus 149 iv~vNKmD~ 157 (446)
T PTZ00141 149 IVCINKMDD 157 (446)
T ss_pred EEEEEcccc
Confidence 899999995
No 270
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.21 E-value=1.8e-05 Score=92.55 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=67.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceec-CCCCceeE-EEEEE--------------E--E--EC--------CE
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTIN-AFEPATSS-VKVIA--------------G--L--VH--------GV 518 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs-~i~pgTTr-v~e~~--------------~--~--i~--------G~ 518 (1109)
-+..++|+++|..++|||||+.+|.+....... ....+.|- +.... . . .+ ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 345689999999999999999999774211000 00112221 11000 0 0 00 26
Q ss_pred EEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEecc
Q 036930 519 KIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHA 598 (1109)
Q Consensus 519 ~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKa 598 (1109)
.+.||||||..+ ....+...+ ..+|++++|++++...........+..+. ..+ .+++++|+||+
T Consensus 86 ~i~liDtPG~~~----------f~~~~~~~~--~~~D~~llVVDa~~~~~~~~t~~~l~~l~-~~~---i~~iiVVlNK~ 149 (411)
T PRK04000 86 RVSFVDAPGHET----------LMATMLSGA--ALMDGAILVIAANEPCPQPQTKEHLMALD-IIG---IKNIVIVQNKI 149 (411)
T ss_pred EEEEEECCCHHH----------HHHHHHHHH--hhCCEEEEEEECCCCCCChhHHHHHHHHH-HcC---CCcEEEEEEee
Confidence 899999999522 111121112 13799999987764221222344444443 222 25789999999
Q ss_pred CCCC
Q 036930 599 ASEP 602 (1109)
Q Consensus 599 D~l~ 602 (1109)
|+..
T Consensus 150 Dl~~ 153 (411)
T PRK04000 150 DLVS 153 (411)
T ss_pred cccc
Confidence 9864
No 271
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=98.21 E-value=8.3e-06 Score=85.79 Aligned_cols=114 Identities=20% Similarity=0.194 Sum_probs=65.1
Q ss_pred CcEEEEEecCCCChhHHHH-HHhCCCcce----ecCCCCceeE---EEEE--------EEEECC--EEEEEEeCCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATIN-SIFGEEKST----INAFEPATSS---VKVI--------AGLVHG--VKIRIFDTPGLRSP 531 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLIN-aLLG~~va~----Vs~i~pgTTr---v~e~--------~~~i~G--~~VtLIDTPGL~ds 531 (1109)
.++|+++|.+|||||||++ .+.+.. +. ...+.| |.. .... ...++| .++.||||||....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~-~~~~~f~~~~~p-Ti~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKT-LTQYQLLATHVP-TVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC-cccccCccccCC-ceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh
Confidence 4799999999999999996 444322 11 111212 221 0111 113444 56889999998531
Q ss_pred CcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 532 AIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 532 ~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
. + ..++ .++|++++|.+++... +......++..+.... ...|+|+|.||+|+..
T Consensus 80 ~----------~--~~~~--~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~---~~~piilvgNK~DL~~ 134 (195)
T cd01873 80 D----------R--RFAY--GRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC---PRVPVILVGCKLDLRY 134 (195)
T ss_pred h----------h--cccC--CCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC---CCCCEEEEEEchhccc
Confidence 0 0 0112 2589999998887532 2110012344444432 1368999999999753
No 272
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.21 E-value=1.8e-05 Score=93.05 Aligned_cols=122 Identities=18% Similarity=0.205 Sum_probs=64.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc-----ceecCCCCceeE-----------------EEEEE---------EEE
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK-----STINAFEPATSS-----------------VKVIA---------GLV 515 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v-----a~Vs~i~pgTTr-----------------v~e~~---------~~i 515 (1109)
+..+-.|+|+|++||||||++..|+..-. ..|.-+...|.+ +.... ...
T Consensus 218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~ 297 (424)
T PRK05703 218 LKQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL 297 (424)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh
Confidence 34456789999999999999988864321 122211111100 00000 012
Q ss_pred CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh-cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEE
Q 036930 516 HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK-KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILC 594 (1109)
Q Consensus 516 ~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk-~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVV 594 (1109)
.+..++||||||...... ..+..+..++. ...+.-+++|++.+.. ...++.+...|...... -+|
T Consensus 298 ~~~DlVlIDt~G~~~~d~------~~~~~L~~ll~~~~~~~~~~LVl~a~~~------~~~l~~~~~~f~~~~~~--~vI 363 (424)
T PRK05703 298 RDCDVILIDTAGRSQRDK------RLIEELKALIEFSGEPIDVYLVLSATTK------YEDLKDIYKHFSRLPLD--GLI 363 (424)
T ss_pred CCCCEEEEeCCCCCCCCH------HHHHHHHHHHhccCCCCeEEEEEECCCC------HHHHHHHHHHhCCCCCC--EEE
Confidence 346799999999865332 22333444443 1124455666444332 23355555566533222 356
Q ss_pred EeccCCCC
Q 036930 595 LTHAASEP 602 (1109)
Q Consensus 595 LTKaD~l~ 602 (1109)
+||.|...
T Consensus 364 ~TKlDet~ 371 (424)
T PRK05703 364 FTKLDETS 371 (424)
T ss_pred Eecccccc
Confidence 99999853
No 273
>PRK00098 GTPase RsgA; Reviewed
Probab=98.20 E-value=3.8e-06 Score=94.07 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=42.0
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCC------ceeEEEEEEEEECCEEEEEEeCCCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEP------ATSSVKVIAGLVHGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~p------gTTrv~e~~~~i~G~~VtLIDTPGL~ds~ 532 (1109)
+-.++|+|++|||||||||+|++.....++.+.. .||+.... ..+.+ ...|+||||++.-.
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~-~~~~~-~~~~~DtpG~~~~~ 230 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVEL-YDLPG-GGLLIDTPGFSSFG 230 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEE-EEcCC-CcEEEECCCcCccC
Confidence 3478899999999999999999987766665421 25552221 12221 23799999998643
No 274
>PRK13796 GTPase YqeH; Provisional
Probab=98.16 E-value=2.3e-06 Score=98.38 Aligned_cols=58 Identities=34% Similarity=0.476 Sum_probs=42.4
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCC-----cceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEE-----KSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSP 531 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~-----va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds 531 (1109)
+.+++++|.||||||||||+|++.. ...++.. ||||+ ...+. +++ ...|+||||+...
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~-pGTT~~~~~~~--l~~-~~~l~DTPGi~~~ 223 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRF-PGTTLDKIEIP--LDD-GSFLYDTPGIIHR 223 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCC-CCccceeEEEE--cCC-CcEEEECCCcccc
Confidence 3589999999999999999999642 3346665 88887 33332 222 2479999999653
No 275
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.16 E-value=1e-05 Score=80.58 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=82.3
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~ 551 (1109)
||++||+.|+||+||.|+|-|.... .--|.. .+++.. -.|||||..-.. ......+.-..
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l------ykKTQA----ve~~d~--~~IDTPGEy~~~------~~~Y~aL~tt~-- 62 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL------YKKTQA----VEFNDK--GDIDTPGEYFEH------PRWYHALITTL-- 62 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh------hcccce----eeccCc--cccCCchhhhhh------hHHHHHHHHHh--
Confidence 7999999999999999999997642 111111 112211 259999975422 23333333222
Q ss_pred CCCcEEEEEecCCCC--CCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCCCCCccHHHHHhhcHHHHHHHHH
Q 036930 552 FPPDVVLYVDRLDTH--TRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRIS 629 (1109)
Q Consensus 552 ~gpDVVLLVvrlds~--t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~~~p~sieefV~q~~~~LQelI~ 629 (1109)
+.+|+++||..++.. ++.+ .|..-..+++|-|+||+|+.++ +.....++.+.
T Consensus 63 ~dadvi~~v~~and~~s~f~p-----------~f~~~~~k~vIgvVTK~DLaed---------------~dI~~~~~~L~ 116 (148)
T COG4917 63 QDADVIIYVHAANDPESRFPP-----------GFLDIGVKKVIGVVTKADLAED---------------ADISLVKRWLR 116 (148)
T ss_pred hccceeeeeecccCccccCCc-----------ccccccccceEEEEecccccch---------------HhHHHHHHHHH
Confidence 358999999777643 2221 2222234679999999998642 22344556666
Q ss_pred HHhCCCceeccCCCCHHHHHhhHHHHH
Q 036930 630 QAIGDPHLMNLNMMHPVSLVENHQSCQ 656 (1109)
Q Consensus 630 qc~gr~~lfn~s~r~pv~LvEn~~l~~ 656 (1109)
+++ .-.+|..+.-++..+.+...++.
T Consensus 117 eaG-a~~IF~~s~~d~~gv~~l~~~L~ 142 (148)
T COG4917 117 EAG-AEPIFETSAVDNQGVEELVDYLA 142 (148)
T ss_pred HcC-CcceEEEeccCcccHHHHHHHHH
Confidence 665 55666555545555555444544
No 276
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.16 E-value=4.1e-06 Score=93.91 Aligned_cols=59 Identities=34% Similarity=0.518 Sum_probs=41.6
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCC------CceeE-EEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFE------PATSS-VKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~------pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
..+|+|.+|||||||||+|.+.....++.+. -.||+ ...+...-+| .|||||||..-..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccCc
Confidence 6789999999999999999987666665531 22554 3333332344 4899999988654
No 277
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=98.15 E-value=8.2e-06 Score=86.37 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=63.0
Q ss_pred EecCCCChhHHHHHHhCCCcceecCCCCcee--EEEEEEEEEC--CEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc
Q 036930 476 LGKTGVGKSATINSIFGEEKSTINAFEPATS--SVKVIAGLVH--GVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 476 VGkTGVGKSSLINaLLG~~va~Vs~i~pgTT--rv~e~~~~i~--G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~ 551 (1109)
+|..|||||||++.++... +. ..+.+ |. .+......++ ..++.||||||-.... .+ ...+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~-f~-~~~~~-Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~-------~l---~~~~~~- 66 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGE-FE-KKYVA-TLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFG-------GL---RDGYYI- 66 (200)
T ss_pred CCCCCCCHHHHHHHHhcCC-CC-CCCCC-ceeEEEEEEEEEECCEEEEEEEEECCCchhhh-------hh---hHHHhc-
Confidence 6999999999999998543 21 12212 22 1222333343 4678899999984311 11 112232
Q ss_pred CCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 552 FPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 552 ~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++|++++|.+++... +.. -..++..|.+.. ...|+|+|.||+|+.
T Consensus 67 -~ad~~ilV~D~t~~~S~~~-i~~w~~~i~~~~---~~~piilvgNK~Dl~ 112 (200)
T smart00176 67 -QGQCAIIMFDVTARVTYKN-VPNWHRDLVRVC---ENIPIVLCGNKVDVK 112 (200)
T ss_pred -CCCEEEEEEECCChHHHHH-HHHHHHHHHHhC---CCCCEEEEEECcccc
Confidence 489999998776532 211 112344444432 246999999999974
No 278
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.13 E-value=5.6e-06 Score=92.22 Aligned_cols=59 Identities=25% Similarity=0.412 Sum_probs=40.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCC------CceeE-EEEEEEEECCEEEEEEeCCCCCCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFE------PATSS-VKVIAGLVHGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~------pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~ 532 (1109)
..++++|++|||||||||+|+|.....++.+. ..||+ .........+ .|+||||+.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence 47899999999999999999998766555431 23554 3322222122 699999997643
No 279
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.11 E-value=4e-05 Score=95.56 Aligned_cols=114 Identities=12% Similarity=0.135 Sum_probs=69.0
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCccee---------cCCCC-----cee-EEEEE--EEEE--CCEEEEEEeCCCCCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTI---------NAFEP-----ATS-SVKVI--AGLV--HGVKIRIFDTPGLRSP 531 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~V---------s~i~p-----gTT-rv~e~--~~~i--~G~~VtLIDTPGL~ds 531 (1109)
-+|+++|..++|||||+.+|+....... .++.+ +.| ..... .+.+ .+..+.||||||..+.
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df 100 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF 100 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence 4799999999999999999985432211 11100 111 11111 2222 3688999999999772
Q ss_pred CcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 532 AIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 532 ~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
. ..+ ...+. .+|++++|++... ........+++.+... + .+.|+++||+|...
T Consensus 101 ~------~~~----~~~l~--~~D~avlVvda~~-g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~~ 153 (731)
T PRK07560 101 G------GDV----TRAMR--AVDGAIVVVDAVE-GVMPQTETVLRQALRE-R----VKPVLFINKVDRLI 153 (731)
T ss_pred H------HHH----HHHHH--hcCEEEEEEECCC-CCCccHHHHHHHHHHc-C----CCeEEEEECchhhc
Confidence 1 122 23333 3799999977543 2333455666654332 2 46789999999763
No 280
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.10 E-value=1.8e-05 Score=96.60 Aligned_cols=113 Identities=13% Similarity=0.065 Sum_probs=66.1
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcce--------ecCC------CCceeEEEEEEEEEC-----CEEEEEEeCCCCCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKST--------INAF------EPATSSVKVIAGLVH-----GVKIRIFDTPGLRSP 531 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~--------Vs~i------~pgTTrv~e~~~~i~-----G~~VtLIDTPGL~ds 531 (1109)
-+|+++|..++|||||++.|+...... +.+. ...|.........|. +..+.||||||..+.
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 489999999999999999998532111 1110 011222222223332 578999999999763
Q ss_pred CcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 532 AIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 532 ~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
. ..+. +.+. .+|++|+|++++.. ........+..+.. ...++|+|+||+|+.
T Consensus 88 ~------~~v~----~sl~--~aD~aILVVDas~g-v~~qt~~~~~~~~~-----~~lpiIvViNKiDl~ 139 (600)
T PRK05433 88 S------YEVS----RSLA--ACEGALLVVDASQG-VEAQTLANVYLALE-----NDLEIIPVLNKIDLP 139 (600)
T ss_pred H------HHHH----HHHH--HCCEEEEEEECCCC-CCHHHHHHHHHHHH-----CCCCEEEEEECCCCC
Confidence 2 1222 2333 37999999776542 22222223332222 136799999999974
No 281
>PRK12740 elongation factor G; Reviewed
Probab=98.09 E-value=2.7e-05 Score=95.88 Aligned_cols=108 Identities=15% Similarity=0.138 Sum_probs=67.0
Q ss_pred EecCCCChhHHHHHHhCCCccee--cCCC--------------Cc-eeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhh
Q 036930 476 LGKTGVGKSATINSIFGEEKSTI--NAFE--------------PA-TSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVN 538 (1109)
Q Consensus 476 VGkTGVGKSSLINaLLG~~va~V--s~i~--------------pg-TTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~ 538 (1109)
+|.+|+|||||+|.|+.....+. +.+. .+ |.........+++..+.||||||..+. .
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~------~ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF------T 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH------H
Confidence 69999999999999965433211 1110 11 222334566788999999999998541 1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 539 KKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 539 eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..+.. .+. .+|++++|++.... .......+++.+... ..++++|+||+|..
T Consensus 75 ~~~~~----~l~--~aD~vllvvd~~~~-~~~~~~~~~~~~~~~-----~~p~iiv~NK~D~~ 125 (668)
T PRK12740 75 GEVER----ALR--VLDGAVVVVCAVGG-VEPQTETVWRQAEKY-----GVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHH----HHH--HhCeEEEEEeCCCC-cCHHHHHHHHHHHHc-----CCCEEEEEECCCCC
Confidence 12222 232 27999999776542 222233444444332 36899999999975
No 282
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.09 E-value=1.9e-06 Score=91.25 Aligned_cols=118 Identities=24% Similarity=0.321 Sum_probs=63.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCC------cceecC--CCCcee--------E--EEEEEEE-----------------E
Q 036930 471 LNILVLGKTGVGKSATINSIFGEE------KSTINA--FEPATS--------S--VKVIAGL-----------------V 515 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~------va~Vs~--i~pgTT--------r--v~e~~~~-----------------i 515 (1109)
-.|+++|+|||||||++-+|+.+. +..++. +..+.. . +-..... -
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 358899999999999999987432 221111 111100 0 0000000 0
Q ss_pred CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEE
Q 036930 516 HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCL 595 (1109)
Q Consensus 516 ~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVL 595 (1109)
++..++||||||..... ...+..+++++....++-+++|++.+... ++...+....+.++ ... +++
T Consensus 82 ~~~D~vlIDT~Gr~~~d------~~~~~el~~~~~~~~~~~~~LVlsa~~~~---~~~~~~~~~~~~~~---~~~--lIl 147 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRD------EELLEELKKLLEALNPDEVHLVLSATMGQ---EDLEQALAFYEAFG---IDG--LIL 147 (196)
T ss_dssp TTSSEEEEEE-SSSSTH------HHHHHHHHHHHHHHSSSEEEEEEEGGGGG---HHHHHHHHHHHHSS---TCE--EEE
T ss_pred cCCCEEEEecCCcchhh------HHHHHHHHHHhhhcCCccceEEEecccCh---HHHHHHHHHhhccc---Cce--EEE
Confidence 23569999999997643 22333344433333578889997665422 23334444444443 233 449
Q ss_pred eccCCCC
Q 036930 596 THAASEP 602 (1109)
Q Consensus 596 TKaD~l~ 602 (1109)
||.|+..
T Consensus 148 TKlDet~ 154 (196)
T PF00448_consen 148 TKLDETA 154 (196)
T ss_dssp ESTTSSS
T ss_pred EeecCCC
Confidence 9999854
No 283
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.08 E-value=2.5e-05 Score=98.69 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=70.6
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE----------------EEEEEEEE----------------CCE
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS----------------VKVIAGLV----------------HGV 518 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr----------------v~e~~~~i----------------~G~ 518 (1109)
.+|+|+|..++|||||+++|+.....+.... .++++ .......+ ++.
T Consensus 20 rni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~-~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 20 RNMSVIAHVDHGKSTLTDSLVAAAGIIAQEV-AGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCccccc-CCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 4899999999999999999986543221111 11111 11112222 267
Q ss_pred EEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEecc
Q 036930 519 KIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHA 598 (1109)
Q Consensus 519 ~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKa 598 (1109)
.+.||||||..+.. ..+...+ + .+|.+++|++... ........+++.+... ..|+|+++||+
T Consensus 99 ~inliDtPGh~dF~------~e~~~al----~--~~D~ailVvda~~-Gv~~~t~~~~~~~~~~-----~~p~i~~iNK~ 160 (843)
T PLN00116 99 LINLIDSPGHVDFS------SEVTAAL----R--ITDGALVVVDCIE-GVCVQTETVLRQALGE-----RIRPVLTVNKM 160 (843)
T ss_pred EEEEECCCCHHHHH------HHHHHHH----h--hcCEEEEEEECCC-CCcccHHHHHHHHHHC-----CCCEEEEEECC
Confidence 88999999985521 1222222 2 3799999977553 3333355666665543 47899999999
Q ss_pred CCCC
Q 036930 599 ASEP 602 (1109)
Q Consensus 599 D~l~ 602 (1109)
|...
T Consensus 161 D~~~ 164 (843)
T PLN00116 161 DRCF 164 (843)
T ss_pred cccc
Confidence 9864
No 284
>PRK14974 cell division protein FtsY; Provisional
Probab=98.07 E-value=3.7e-05 Score=87.98 Aligned_cols=120 Identities=17% Similarity=0.281 Sum_probs=66.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC------CcceecC--CCCce--------e----EEEEEE---------------E
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE------EKSTINA--FEPAT--------S----SVKVIA---------------G 513 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~------~va~Vs~--i~pgT--------T----rv~e~~---------------~ 513 (1109)
.+..|+++|++|+||||++..|+.. .+..+.. +..+. . .+.... .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 3578899999999999999888632 2211111 11110 0 000000 0
Q ss_pred EECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEE
Q 036930 514 LVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAIL 593 (1109)
Q Consensus 514 ~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIV 593 (1109)
...+..++||||||...... ..+..+++......||.++||++... . ......++.+.+.. ...-+
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~------~lm~eL~~i~~~~~pd~~iLVl~a~~-g--~d~~~~a~~f~~~~-----~~~gi 284 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDA------NLMDELKKIVRVTKPDLVIFVGDALA-G--NDAVEQAREFNEAV-----GIDGV 284 (336)
T ss_pred HhCCCCEEEEECCCccCCcH------HHHHHHHHHHHhhCCceEEEeecccc-c--hhHHHHHHHHHhcC-----CCCEE
Confidence 11356799999999976432 33444544444446899999966543 1 11222233332222 23456
Q ss_pred EEeccCCCC
Q 036930 594 CLTHAASEP 602 (1109)
Q Consensus 594 VLTKaD~l~ 602 (1109)
|+||.|...
T Consensus 285 IlTKlD~~~ 293 (336)
T PRK14974 285 ILTKVDADA 293 (336)
T ss_pred EEeeecCCC
Confidence 799999864
No 285
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.06 E-value=4.5e-06 Score=98.12 Aligned_cols=62 Identities=27% Similarity=0.450 Sum_probs=50.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcc
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIG 534 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~ 534 (1109)
.-++|.+||-||||||||||+|.|+++..|+.. ||-|+ .+.+... -.+.|.|+|||--+.+.
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~T-PGkTKHFQTi~ls---~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSST-PGKTKHFQTIFLS---PSVCLCDCPGLVFPSFS 375 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeecC-CCCcceeEEEEcC---CCceecCCCCccccCCC
Confidence 348899999999999999999999999999995 77655 6666543 45789999999766543
No 286
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.02 E-value=1.6e-05 Score=91.79 Aligned_cols=88 Identities=22% Similarity=0.149 Sum_probs=62.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-----------------EEEEEEeCCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-----------------VKIRIFDTPGLRSP 531 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-----------------~~VtLIDTPGL~ds 531 (1109)
++++.|||.||+|||||+|+|++.....++.+ |.||. +......+.+ ..+.++|.||+...
T Consensus 2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~y-pftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANP-PFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred CceEEEECCCCCChHHHHHHHhCCCccccCCC-CCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 37899999999999999999999886577777 66654 4444444433 36899999999875
Q ss_pred Ccc-hhhhHHHHHHHHHHHhcCCCcEEEEEecCC
Q 036930 532 AIG-RTVNKKTLASIRKSIKKFPPDVVLYVDRLD 564 (1109)
Q Consensus 532 ~~~-~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrld 564 (1109)
... .......+..++. .|++++|++..
T Consensus 81 As~g~Glgn~fL~~ir~------~d~l~hVvr~f 108 (368)
T TIGR00092 81 ASKGEGLGNQFLANIRE------VDIIQHVVRCF 108 (368)
T ss_pred hhcccCcchHHHHHHHh------CCEEEEEEeCC
Confidence 421 1234455555553 79999997653
No 287
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=5.7e-05 Score=80.20 Aligned_cols=119 Identities=16% Similarity=0.225 Sum_probs=72.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee--EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS--SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTL 542 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT--rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl 542 (1109)
.+.-++|+|+|-+|||||-|+-.+.+..- .-.- -.|- .......++.| .++.||||+|--. -+.+.
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f-~e~~--~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQER-------Frtit 75 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTF-TESY--ISTIGVDFKIRTVELDGKTIKLQIWDTAGQER-------FRTIT 75 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCc-chhh--cceeeeEEEEEEeeecceEEEEEeeeccccHH-------Hhhhh
Confidence 34558999999999999999988876432 1111 1111 13334455566 5688999999721 11121
Q ss_pred HHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 543 ASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 543 ~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..+- .++|.||+|.+++....-..-...+..+.+.... ..+.++|-||+|+..
T Consensus 76 ---~syY--R~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~--~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 76 ---SSYY--RGAHGIIFVYDITKQESFNNVKRWIQEIDRYASE--NVPKLLVGNKCDLTE 128 (205)
T ss_pred ---Hhhc--cCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccC--CCCeEEEeeccccHh
Confidence 1222 2699999998888532211223344455444332 258899999999854
No 288
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.00 E-value=0.0001 Score=86.54 Aligned_cols=119 Identities=13% Similarity=0.120 Sum_probs=63.4
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCc----ceecCCCCceeEEE------------E-EEEE------------ECCEEE
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEK----STINAFEPATSSVK------------V-IAGL------------VHGVKI 520 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~v----a~Vs~i~pgTTrv~------------e-~~~~------------i~G~~V 520 (1109)
+..|+|+|++||||||++..|+.... ..|.-+...|.|.. . .... -.+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 45688999999999999999875321 11211111110000 0 0000 136688
Q ss_pred EEEeCCCCCCCCcchhhhHHHHHHHHHHHhc---CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEec
Q 036930 521 RIFDTPGLRSPAIGRTVNKKTLASIRKSIKK---FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTH 597 (1109)
Q Consensus 521 tLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~---~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTK 597 (1109)
+||||||+..... ..+..+..++.. ..++-++||++.+... .-+..+...|..- ...=+||||
T Consensus 303 VLIDTaGr~~rd~------~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~------~~~~~~~~~f~~~--~~~glIlTK 368 (432)
T PRK12724 303 ILIDTAGYSHRNL------EQLERMQSFYSCFGEKDSVENLLVLSSTSSY------HHTLTVLKAYESL--NYRRILLTK 368 (432)
T ss_pred EEEeCCCCCccCH------HHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH------HHHHHHHHHhcCC--CCCEEEEEc
Confidence 9999999875432 222333333322 1245677775554321 2244555555433 233445999
Q ss_pred cCCCC
Q 036930 598 AASEP 602 (1109)
Q Consensus 598 aD~l~ 602 (1109)
.|...
T Consensus 369 LDEt~ 373 (432)
T PRK12724 369 LDEAD 373 (432)
T ss_pred ccCCC
Confidence 99854
No 289
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.99 E-value=1.1e-05 Score=84.86 Aligned_cols=116 Identities=20% Similarity=0.242 Sum_probs=61.0
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEE---CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLV---HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i---~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
-.|+|+|++|+|||+|+..|....... ..|.........+ .+.++.|||+||...-. ......+.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~-----T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr------~~~~~~~~- 71 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVP-----TVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR------SKLLDELK- 71 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS--------B---SSEEEECCGSSTCGTCECEEEETT-HCCC------HHHHHHHH-
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCC-----eeccccCCceEEeecCCCCEEEEEECCCcHHHH------HHHHHhhh-
Confidence 368999999999999999998753211 1111111111122 46789999999985522 12222221
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhh----CCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSL----GSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~F----G~~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+-.|+||++... ...+-..+.+.|..++ -.....|++|+.||.|+..
T Consensus 72 ~~~--~~k~IIfvvDSs~--~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 72 YLS--NAKGIIFVVDSST--DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp HHG--GEEEEEEEEETTT--HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred chh--hCCEEEEEEeCcc--chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 222 3678999965442 2111122233333222 1233579999999999864
No 290
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.97 E-value=0.00026 Score=74.60 Aligned_cols=117 Identities=13% Similarity=0.128 Sum_probs=71.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecC-----CCCc---eeE-EEEEEEEECC-EEEEEEeCCCCCCCCcchhhh
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINA-----FEPA---TSS-VKVIAGLVHG-VKIRIFDTPGLRSPAIGRTVN 538 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~-----i~pg---TTr-v~e~~~~i~G-~~VtLIDTPGL~ds~~~~~~~ 538 (1109)
...+|+++|+-++||+|++.+|.......+.. ...+ ||. ..-....+.+ ..+.+++|||-....
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~------ 82 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFK------ 82 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHH------
Confidence 35799999999999999999999876433311 1112 333 3334455555 889999999974321
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 539 KKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 539 eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+ ...+.+ ++...+++++-++ ..+.....+++.+.... ..|++|..||.|+..
T Consensus 83 -fm----~~~l~~-ga~gaivlVDss~-~~~~~a~~ii~f~~~~~----~ip~vVa~NK~DL~~ 135 (187)
T COG2229 83 -FM----WEILSR-GAVGAIVLVDSSR-PITFHAEEIIDFLTSRN----PIPVVVAINKQDLFD 135 (187)
T ss_pred -HH----HHHHhC-CcceEEEEEecCC-CcchHHHHHHHHHhhcc----CCCEEEEeeccccCC
Confidence 12 222222 4555445433222 22223456666665542 278999999999864
No 291
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=7e-05 Score=80.10 Aligned_cols=120 Identities=19% Similarity=0.257 Sum_probs=77.2
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHH
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
..+..++|+|+|.+|||||.++-.+... .|..+.+ .|-- .......++| +.+.+|||+|-.. ...+
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~-~f~~~~~--sTiGIDFk~kti~l~g~~i~lQiWDtaGQer-------f~ti 77 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDD-SFNTSFI--STIGIDFKIKTIELDGKKIKLQIWDTAGQER-------FRTI 77 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhc-cCcCCcc--ceEEEEEEEEEEEeCCeEEEEEEEEcccchh-------HHHH
Confidence 4566789999999999999999777643 3333222 1221 2233445566 4567999998733 1222
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.. .+.+ +++.+++|.+++....-.+...+++.|.++-.. ..+.|+|-||+|+..
T Consensus 78 ~~---sYyr--gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~--~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 78 TT---AYYR--GAMGILLVYDITNEKSFENIRNWIKNIDEHASD--DVVKILVGNKCDLEE 131 (207)
T ss_pred HH---HHHh--hcCeeEEEEEccchHHHHHHHHHHHHHHhhCCC--CCcEEEeeccccccc
Confidence 22 2332 589999998887543323345677777776332 578999999999854
No 292
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.95 E-value=5.4e-05 Score=78.41 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=75.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
.+||+++|..|+||||++++|++...-.++ .|--.+-....+++..+.++|--|-.. +.+.-+.+.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~----pt~gf~Iktl~~~~~~L~iwDvGGq~~----------lr~~W~nYf 81 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTIS----PTLGFQIKTLEYKGYTLNIWDVGGQKT----------LRSYWKNYF 81 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccC----CccceeeEEEEecceEEEEEEcCCcch----------hHHHHHHhh
Confidence 689999999999999999999998853333 343355566778899999999877532 122233444
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASE 601 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l 601 (1109)
.. .|.++||++...... -......+++.+.. .+..+++|+.||.|..
T Consensus 82 es--tdglIwvvDssD~~r---~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~ 130 (185)
T KOG0073|consen 82 ES--TDGLIWVVDSSDRMR---MQECKQELTELLVEERLAGAPLLVLANKQDLP 130 (185)
T ss_pred hc--cCeEEEEEECchHHH---HHHHHHHHHHHHhhhhhcCCceEEEEecCcCc
Confidence 43 799999976543211 11233344443322 2457999999999974
No 293
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.95 E-value=0.00024 Score=79.09 Aligned_cols=120 Identities=22% Similarity=0.265 Sum_probs=64.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC------CCcceecC--CCCc--------eeEEE-EEEE------------------
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG------EEKSTINA--FEPA--------TSSVK-VIAG------------------ 513 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG------~~va~Vs~--i~pg--------TTrv~-e~~~------------------ 513 (1109)
.+-.|+++|++|+||||++..|+. ..+..++. +..+ ..+.. ....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~ 150 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA 150 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH
Confidence 345678999999999999988863 22222221 1110 00000 0000
Q ss_pred EECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc------CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCC
Q 036930 514 LVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK------FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSV 587 (1109)
Q Consensus 514 ~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~------~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v 587 (1109)
...+..++||||||...... ..+.+++++... ..+|.+++|++... . ..+......+.+.+
T Consensus 151 ~~~~~D~ViIDT~G~~~~d~------~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~-~--~~~~~~~~~f~~~~---- 217 (272)
T TIGR00064 151 KARNIDVVLIDTAGRLQNKV------NLMDELKKIKRVIKKVDKDAPDEVLLVLDATT-G--QNALEQAKVFNEAV---- 217 (272)
T ss_pred HHCCCCEEEEeCCCCCcchH------HHHHHHHHHHHHHhcccCCCCceEEEEEECCC-C--HHHHHHHHHHHhhC----
Confidence 02457899999999876431 223333332221 24899999977653 2 11222223322222
Q ss_pred CCeEEEEEeccCCCC
Q 036930 588 WQNAILCLTHAASEP 602 (1109)
Q Consensus 588 ~k~vIVVLTKaD~l~ 602 (1109)
...-+|+||.|...
T Consensus 218 -~~~g~IlTKlDe~~ 231 (272)
T TIGR00064 218 -GLTGIILTKLDGTA 231 (272)
T ss_pred -CCCEEEEEccCCCC
Confidence 24456799999854
No 294
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=97.93 E-value=2.8e-05 Score=82.54 Aligned_cols=118 Identities=21% Similarity=0.227 Sum_probs=72.2
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
..+|+++|.+|||||+|....++..- +..+.|..-........++| ..+.|+||+|..+.. .+ ...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f--~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~--------~~--~~~ 70 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF--VEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFS--------AM--RDL 70 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc--ccccCCCccccceEEEEECCEEEEEEEEcCCCcccCh--------HH--HHH
Confidence 46899999999999999987775432 22232222123344445555 557799999933221 11 112
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++. ..|.+++|.+++....-.....+...|....+. .+.|+|+|-||+|+..
T Consensus 71 ~~~--~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 71 YIR--NGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLER 122 (196)
T ss_pred hhc--cCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchh
Confidence 333 379999998888643222233455555443333 2469999999999854
No 295
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=4e-05 Score=82.07 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=74.6
Q ss_pred cccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHH
Q 036930 465 DDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTL 542 (1109)
Q Consensus 465 e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl 542 (1109)
+..+..++|+|||-+|||||-|+...+.. .|....-...-.........++| ++..||||+|-..- +.+.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrn-EF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERy-------rAit 80 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRN-EFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERY-------RAIT 80 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhccc-ccCcccccceeEEEEeeceeecCcEEEEeeecccchhhh-------cccc
Confidence 56777899999999999999999877643 33332211111113334455666 45679999997331 1111
Q ss_pred HHHHHHHhcCCCcEEEEEecCCCC-CCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 543 ASIRKSIKKFPPDVVLYVDRLDTH-TRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 543 ~~Ikk~Lk~~gpDVVLLVvrlds~-t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...- .++...|+|-+++.. ++. .-.++|+.|..+... ...+++|-||+|+..
T Consensus 81 SaYY-----rgAvGAllVYDITr~~Tfe-nv~rWL~ELRdhad~--nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 81 SAYY-----RGAVGALLVYDITRRQTFE-NVERWLKELRDHADS--NIVIMLVGNKSDLNH 133 (222)
T ss_pred chhh-----cccceeEEEEechhHHHHH-HHHHHHHHHHhcCCC--CeEEEEeecchhhhh
Confidence 1111 257888999888643 332 233455555554433 467889999999854
No 296
>PRK13768 GTPase; Provisional
Probab=97.90 E-value=4.1e-05 Score=83.98 Aligned_cols=81 Identities=19% Similarity=0.128 Sum_probs=43.7
Q ss_pred EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEec
Q 036930 518 VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTH 597 (1109)
Q Consensus 518 ~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTK 597 (1109)
..+++|||||..+...-......+.+. +....++++++|++.... ....+.....++....-.....|+++|+||
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~----l~~~~~~~ii~liD~~~~-~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVER----LSGSSKSVVVFLIDAVLA-KTPSDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHH----HHhcCCeEEEEEechHHh-CCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 368999999976532111122223333 322237899999766432 222233333322211000124899999999
Q ss_pred cCCCCC
Q 036930 598 AASEPP 603 (1109)
Q Consensus 598 aD~l~p 603 (1109)
+|....
T Consensus 172 ~D~~~~ 177 (253)
T PRK13768 172 ADLLSE 177 (253)
T ss_pred HhhcCc
Confidence 998754
No 297
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=97.89 E-value=7.5e-05 Score=84.27 Aligned_cols=129 Identities=21% Similarity=0.165 Sum_probs=76.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEE-ECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGL-VHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~-i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
.+...|++||-||+|||||||+|++.....-... -.|-.+...... ..|..+.+.||-||...- .......++
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drL-FATLDpT~h~a~Lpsg~~vlltDTvGFisdL-----P~~LvaAF~ 249 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRL-FATLDPTLHSAHLPSGNFVLLTDTVGFISDL-----PIQLVAAFQ 249 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchh-heeccchhhhccCCCCcEEEEeechhhhhhC-----cHHHHHHHH
Confidence 4456799999999999999999996543221111 123222223333 368899999999997632 112222332
Q ss_pred HHHhc-CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC--CCCeEEEEEeccCCCC
Q 036930 547 KSIKK-FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS--VWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~-~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~--v~k~vIVVLTKaD~l~ 602 (1109)
..+.. ..+|++|.|.+++..........++..+..+--.. ...++|=|-||+|.-+
T Consensus 250 ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~ 308 (410)
T KOG0410|consen 250 ATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEE 308 (410)
T ss_pred HHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccc
Confidence 22221 13899999988887654433334555555442111 1245677889999754
No 298
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=3.7e-05 Score=87.66 Aligned_cols=129 Identities=20% Similarity=0.263 Sum_probs=77.0
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCcc--eecCCCCceeEEE-EEEE----EECC---------------------
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKS--TINAFEPATSSVK-VIAG----LVHG--------------------- 517 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~va--~Vs~i~pgTTrv~-e~~~----~i~G--------------------- 517 (1109)
++...--|+++|+-..||||+||.|+..+.- .+++ .|.|.+.. ..++ .+.|
T Consensus 54 dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGp-EPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af 132 (532)
T KOG1954|consen 54 DFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGP-EPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF 132 (532)
T ss_pred ccccCceEEEEeccccchhHHHHHHHhCCCCccccCC-CCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence 4555567999999999999999999987642 3444 24444422 1111 1111
Q ss_pred --------------EEEEEEeCCCCCCCCcch-hhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhh
Q 036930 518 --------------VKIRIFDTPGLRSPAIGR-TVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSS 582 (1109)
Q Consensus 518 --------------~~VtLIDTPGL~ds~~~~-~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~ 582 (1109)
..|+||||||+....... ...-.....+.-++. ++|.|+++.+...-....+..+++..++..
T Consensus 133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFae--R~D~IiLlfD~hKLDIsdEf~~vi~aLkG~ 210 (532)
T KOG1954|consen 133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAE--RVDRIILLFDAHKLDISDEFKRVIDALKGH 210 (532)
T ss_pred HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHH--hccEEEEEechhhccccHHHHHHHHHhhCC
Confidence 458999999997753210 011111112222233 489999995544444444445566655533
Q ss_pred hCCCCCCeEEEEEeccCCCC
Q 036930 583 LGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 583 FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...+-||+||+|...
T Consensus 211 -----EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 211 -----EDKIRVVLNKADQVD 225 (532)
T ss_pred -----cceeEEEeccccccC
Confidence 356778899999875
No 299
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=4.6e-05 Score=92.18 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=72.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEE------------------------------------
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVI------------------------------------ 511 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~------------------------------------ 511 (1109)
+...+|+++|.+++||||+||+++-.+....+.. ++|-....+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~g-h~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIG-HTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCccccc-ccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 3468999999999999999999997766443331 222211111
Q ss_pred -------EEEEC-C------EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHH
Q 036930 512 -------AGLVH-G------VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLK 577 (1109)
Q Consensus 512 -------~~~i~-G------~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk 577 (1109)
.+.|+ + -.+.+||.||+.-+.. .... +-.+.. .+|+++||+.... +++..+..++.
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se---~tsw----id~~cl--daDVfVlV~NaEn-tlt~sek~Ff~ 255 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE---LTSW----IDSFCL--DADVFVLVVNAEN-TLTLSEKQFFH 255 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchh---hhHH----HHHHhh--cCCeEEEEecCcc-HhHHHHHHHHH
Confidence 01111 1 2478999999976432 1122 222222 3899999965543 33334555565
Q ss_pred HHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 578 SLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 578 ~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...+. .+++.|+-||||...
T Consensus 256 ~vs~~-----KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 256 KVSEE-----KPNIFILNNKWDASA 275 (749)
T ss_pred Hhhcc-----CCcEEEEechhhhhc
Confidence 54442 467778888999865
No 300
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.83 E-value=4.8e-05 Score=90.85 Aligned_cols=121 Identities=23% Similarity=0.195 Sum_probs=82.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcc-eecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKS-TINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va-~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
...+||+|+|..||||||||=+|+..+-. .|-...+-.+- .........+..++||.--.+ ....+.++++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~I--PadvtPe~vpt~ivD~ss~~~------~~~~l~~Eir 78 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILI--PADVTPENVPTSIVDTSSDSD------DRLCLRKEIR 78 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcccc--CCccCcCcCceEEEecccccc------hhHHHHHHHh
Confidence 45789999999999999999999976531 12111111211 133334567789999972211 1233344454
Q ss_pred HHHhcCCCcEEEEEecCCC-CCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDT-HTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds-~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+ +|+|++|-..+. .+.+.-...+|-.|...||.....|+|+|-||+|...
T Consensus 79 k------A~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~ 129 (625)
T KOG1707|consen 79 K------ADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGD 129 (625)
T ss_pred h------cCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcc
Confidence 3 899999976665 4554445567788888898888999999999999865
No 301
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.82 E-value=0.00028 Score=83.62 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=70.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcc------------------------eecCC------CCceeEEEEEEEEECC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKS------------------------TINAF------EPATSSVKVIAGLVHG 517 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va------------------------~Vs~i------~pgTTrv~e~~~~i~G 517 (1109)
++.++|+++|..++|||||+-.|+-.... -+.+. ...|-.+......+.+
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 46789999999999999999888621100 00111 1123334445566788
Q ss_pred EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCC------CCcHHHHHHHHhhhCCCCCCeE
Q 036930 518 VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRD------HNDLPLLKSLTSSLGSSVWQNA 591 (1109)
Q Consensus 518 ~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d------~eD~~lLk~I~e~FG~~v~k~v 591 (1109)
+.++||||||..+ ....+...+. .+|++++|++.+...+. ..-.+.+. +...+| .+++
T Consensus 85 ~~i~liDtPGh~d----------f~~~~~~g~~--~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~-~~~~~g---i~~i 148 (447)
T PLN00043 85 YYCTVIDAPGHRD----------FIKNMITGTS--QADCAVLIIDSTTGGFEAGISKDGQTREHAL-LAFTLG---VKQM 148 (447)
T ss_pred EEEEEEECCCHHH----------HHHHHHhhhh--hccEEEEEEEcccCceecccCCCchHHHHHH-HHHHcC---CCcE
Confidence 9999999999743 1112222222 48999999877642111 11122222 222233 3578
Q ss_pred EEEEeccCCC
Q 036930 592 ILCLTHAASE 601 (1109)
Q Consensus 592 IVVLTKaD~l 601 (1109)
||++||+|..
T Consensus 149 IV~vNKmD~~ 158 (447)
T PLN00043 149 ICCCNKMDAT 158 (447)
T ss_pred EEEEEcccCC
Confidence 8999999964
No 302
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.81 E-value=0.00052 Score=78.10 Aligned_cols=123 Identities=28% Similarity=0.326 Sum_probs=64.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC------CcceecC--CCCc--------eeE--EEEEEE-----------------
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE------EKSTINA--FEPA--------TSS--VKVIAG----------------- 513 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~------~va~Vs~--i~pg--------TTr--v~e~~~----------------- 513 (1109)
.+-.|+|+|++|+||||++..|++. .+..++. +..+ ..+ +.....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999998753 2222211 1100 000 100000
Q ss_pred EECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh---cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCe
Q 036930 514 LVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK---KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQN 590 (1109)
Q Consensus 514 ~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk---~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~ 590 (1109)
...+..++||||||....... ...+ ++.+.+.+. .+.|+-+++|++.+... +. +..+.. |-.. ...
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~--l~~e-L~~~~~v~~~~~~~~p~~~~LVl~a~~g~---~~---~~~a~~-f~~~-~~~ 261 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTN--LMEE-LKKIKRVIKKADPDAPHEVLLVLDATTGQ---NA---LSQAKA-FHEA-VGL 261 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHH--HHHH-HHHHHHHHhhhcCCCCceEEEEEECCCCh---HH---HHHHHH-HHhh-CCC
Confidence 123467999999998764421 1111 222222221 24588889997666321 12 222222 2111 234
Q ss_pred EEEEEeccCCCC
Q 036930 591 AILCLTHAASEP 602 (1109)
Q Consensus 591 vIVVLTKaD~l~ 602 (1109)
.-+|+||.|...
T Consensus 262 ~giIlTKlD~t~ 273 (318)
T PRK10416 262 TGIILTKLDGTA 273 (318)
T ss_pred CEEEEECCCCCC
Confidence 567899999653
No 303
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.80 E-value=5.8e-05 Score=85.61 Aligned_cols=90 Identities=24% Similarity=0.279 Sum_probs=63.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-----------------EEEEEEeCCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-----------------VKIRIFDTPGL 528 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-----------------~~VtLIDTPGL 528 (1109)
....++|.+||.||||||||+|+|+..... .+.+ |.+|- ..+....+.. ..++|+|++||
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~Nf-PF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANF-PFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCC-CcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 345689999999999999999999987764 6666 66554 4444333321 45899999999
Q ss_pred CCCCcc-hhhhHHHHHHHHHHHhcCCCcEEEEEecCC
Q 036930 529 RSPAIG-RTVNKKTLASIRKSIKKFPPDVVLYVDRLD 564 (1109)
Q Consensus 529 ~ds~~~-~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrld 564 (1109)
...+.. .......+..++. +|.++.|++.-
T Consensus 95 vkGAs~G~GLGN~FLs~iR~------vDaifhVVr~f 125 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRH------VDAIFHVVRAF 125 (391)
T ss_pred ccCcccCcCchHHHHHhhhh------ccceeEEEEec
Confidence 876532 2445566666653 78999996653
No 304
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.78 E-value=0.00068 Score=80.24 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=66.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhC------CCcceecC--CCCce--------eEE-EEEEE----------------E
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFG------EEKSTINA--FEPAT--------SSV-KVIAG----------------L 514 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG------~~va~Vs~--i~pgT--------Trv-~e~~~----------------~ 514 (1109)
..+..|+++|++|+||||++..|+. ..+..+.. +.++. .+. ...+. .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 3567889999999999999988863 22222221 11110 000 00010 0
Q ss_pred ECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEE
Q 036930 515 VHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILC 594 (1109)
Q Consensus 515 i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVV 594 (1109)
.....++||||||..... ...+.+++.......+|.+++|++.... ...++.+.. |.... ...-+|
T Consensus 173 ~~~~DvVIIDTAGr~~~d------~~lm~El~~l~~~~~pdevlLVvda~~g------q~av~~a~~-F~~~l-~i~gvI 238 (437)
T PRK00771 173 FKKADVIIVDTAGRHALE------EDLIEEMKEIKEAVKPDEVLLVIDATIG------QQAKNQAKA-FHEAV-GIGGII 238 (437)
T ss_pred hhcCCEEEEECCCcccch------HHHHHHHHHHHHHhcccceeEEEecccc------HHHHHHHHH-HHhcC-CCCEEE
Confidence 123478999999986532 2344444444333458999999765431 123443332 43221 234567
Q ss_pred EeccCCCC
Q 036930 595 LTHAASEP 602 (1109)
Q Consensus 595 LTKaD~l~ 602 (1109)
+||.|...
T Consensus 239 lTKlD~~a 246 (437)
T PRK00771 239 ITKLDGTA 246 (437)
T ss_pred EecccCCC
Confidence 99999754
No 305
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.76 E-value=3.5e-05 Score=84.26 Aligned_cols=104 Identities=18% Similarity=0.265 Sum_probs=70.1
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcc-hhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIG-RTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~-~~~~eeIl~~Ikk~ 548 (1109)
.||++||-|.||||||+.+|+...- ....+ ..||- |.....+++|-.+.++|.||+...+.. ....+++....
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~S-eaA~y-eFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavA--- 137 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTHS-EAASY-EFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVA--- 137 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcchh-hhhce-eeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEe---
Confidence 5999999999999999999997653 33344 44554 888999999999999999999886521 12222222111
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS 585 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~ 585 (1109)
..+|+||.|++.+... ..+.+|+.-.+..|.
T Consensus 138 ---rtaDlilMvLDatk~e---~qr~~le~ELe~vGi 168 (364)
T KOG1486|consen 138 ---RTADLILMVLDATKSE---DQREILEKELEAVGI 168 (364)
T ss_pred ---ecccEEEEEecCCcch---hHHHHHHHHHHHhce
Confidence 1389999996554322 244466544444443
No 306
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00027 Score=82.11 Aligned_cols=142 Identities=17% Similarity=0.153 Sum_probs=84.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC---------------------Ccceec---------CCCCceeEEEEEEEEECC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE---------------------EKSTIN---------AFEPATSSVKVIAGLVHG 517 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~---------------------~va~Vs---------~i~pgTTrv~e~~~~i~G 517 (1109)
...++++++|...+|||||+-.|+=. .-+..+ .....|..+.....+.+-
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 35689999999999999999887522 111110 011234444455666677
Q ss_pred EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCC------CCCCcHHHHHHHHhhhCCCCCCeE
Q 036930 518 VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHT------RDHNDLPLLKSLTSSLGSSVWQNA 591 (1109)
Q Consensus 518 ~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t------~d~eD~~lLk~I~e~FG~~v~k~v 591 (1109)
+.++|+|+||.++.- ..+..-+ .++|+.+||++..... ... +-+.--.|...+| .+++
T Consensus 85 ~~~tIiDaPGHrdFv------knmItGa------sqAD~aVLVV~a~~~efE~g~~~~g-QtrEH~~La~tlG---i~~l 148 (428)
T COG5256 85 YNFTIIDAPGHRDFV------KNMITGA------SQADVAVLVVDARDGEFEAGFGVGG-QTREHAFLARTLG---IKQL 148 (428)
T ss_pred ceEEEeeCCchHHHH------HHhhcch------hhccEEEEEEECCCCccccccccCC-chhHHHHHHHhcC---CceE
Confidence 889999999965521 1121111 2489999997766432 222 2223334555556 5899
Q ss_pred EEEEeccCCCCCCCCCCCCccHHHHHhhcHHHHHHHHHHHhCC
Q 036930 592 ILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRISQAIGD 634 (1109)
Q Consensus 592 IVVLTKaD~l~pd~~~~~p~sieefV~q~~~~LQelI~qc~gr 634 (1109)
||++||.|...- +-+.|- +....+..+++.|+..
T Consensus 149 IVavNKMD~v~w--------de~rf~-ei~~~v~~l~k~~G~~ 182 (428)
T COG5256 149 IVAVNKMDLVSW--------DEERFE-EIVSEVSKLLKMVGYN 182 (428)
T ss_pred EEEEEccccccc--------CHHHHH-HHHHHHHHHHHHcCCC
Confidence 999999998641 222222 2233455666666644
No 307
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=5.4e-05 Score=80.10 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=65.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
.++|+|+|.+|||||||+-...... |.... ..|.- .......+++ +++.+|||+|.-.-.. +
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~-F~e~~--e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~s-----------l 70 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQ-FHENI--EPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHS-----------L 70 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCc-ccccc--ccccccEEEEEEEEeCCcEEEEEEEEcCCcccccc-----------c
Confidence 5899999999999999997665322 21110 11111 1222333344 7888999999854221 1
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.. +--.++++.|+|.+++....-..-...++.|++.-++ ...+.+|-||+|+..
T Consensus 71 ap-MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~--~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 71 AP-MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASP--NIVIALVGNKADLLE 124 (200)
T ss_pred cc-ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCC--CeEEEEecchhhhhh
Confidence 11 1112689999998887532111123344445444321 123345899999875
No 308
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.74 E-value=0.00043 Score=82.42 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=67.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecC-CCCc-eeE----------E------EE---E--------EE-----
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINA-FEPA-TSS----------V------KV---I--------AG----- 513 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~-i~pg-TTr----------v------~e---~--------~~----- 513 (1109)
...++|+++|.-..|||||+.+|+|........ ...+ |-. | .. . ..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 356899999999999999999999864432110 0000 100 0 00 0 00
Q ss_pred -EECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEE
Q 036930 514 -LVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAI 592 (1109)
Q Consensus 514 -~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vI 592 (1109)
....+.+.||||||.. .+.+.+...+. .+|++++|++++.........+.+. +...+| .+++|
T Consensus 112 ~~~~~~~i~~IDtPGH~----------~fi~~m~~g~~--~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg---i~~iI 175 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHD----------ILMATMLNGAA--VMDAALLLIAANESCPQPQTSEHLA-AVEIMK---LKHII 175 (460)
T ss_pred cccccceEeeeeCCCHH----------HHHHHHHHHHh--hCCEEEEEEECCCCccchhhHHHHH-HHHHcC---CCcEE
Confidence 0113578999999952 22222222222 4899999987764222221223333 233444 36899
Q ss_pred EEEeccCCCC
Q 036930 593 LCLTHAASEP 602 (1109)
Q Consensus 593 VVLTKaD~l~ 602 (1109)
+|+||+|+..
T Consensus 176 VvlNKiDlv~ 185 (460)
T PTZ00327 176 ILQNKIDLVK 185 (460)
T ss_pred EEEecccccC
Confidence 9999999853
No 309
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.00044 Score=70.79 Aligned_cols=121 Identities=17% Similarity=0.228 Sum_probs=72.9
Q ss_pred cccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHH
Q 036930 465 DDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKK 540 (1109)
Q Consensus 465 e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~ee 540 (1109)
++.++-++|+|||..||||+-|+...+. ..|..+. ..|-- ......+++| +++.+|||+|-... +.
T Consensus 2 edykflfkivlvgnagvgktclvrrftq-glfppgq--gatigvdfmiktvev~gekiklqiwdtagqerf-------rs 71 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQ-GLFPPGQ--GATIGVDFMIKTVEVNGEKIKLQIWDTAGQERF-------RS 71 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhc-cCCCCCC--CceeeeeEEEEEEEECCeEEEEEEeeccchHHH-------HH
Confidence 3456778999999999999999988763 2222222 11221 2223344555 67889999996321 11
Q ss_pred HHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 541 TLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 541 Il~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
|.. .+.+ .+|++++|.+++....-.--..+|+.|...-... .-.|+|-||.|+..
T Consensus 72 itq---syyr--sahalilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~d 126 (213)
T KOG0095|consen 72 ITQ---SYYR--SAHALILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLAD 126 (213)
T ss_pred HHH---HHhh--hcceEEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhh
Confidence 211 1222 3899999988875332112445677777653322 33578899999754
No 310
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.70 E-value=0.00017 Score=82.43 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHh
Q 036930 468 DFSLNILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLL 491 (1109)
...+.|.|.|++|+|||||++.|.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~ 77 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALG 77 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999874
No 311
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.00043 Score=73.73 Aligned_cols=118 Identities=18% Similarity=0.231 Sum_probs=68.2
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..+|+++|..+|||||||+..+-... . ..+ ..|-- .......+.| +++.||||+|-.. ....+
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~f-d-~~Y-qATIGiDFlskt~~l~d~~vrLQlWDTAGQER----------Frsli 88 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKF-D-NTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLI 88 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhh-c-ccc-cceeeeEEEEEEEEEcCcEEEEEEEecccHHH----------Hhhhh
Confidence 38999999999999999999884321 1 111 11111 1122223444 5577999999622 11112
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPP 603 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~p 603 (1109)
-.+++ .+.++++|.+++....-..-.++++.+...-|.. ...+++|-||.|+..+
T Consensus 89 psY~R--ds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~-~viI~LVGnKtDL~dk 143 (221)
T KOG0094|consen 89 PSYIR--DSSVAVIVYDITDRNSFENTSKWIEDVRRERGSD-DVIIFLVGNKTDLSDK 143 (221)
T ss_pred hhhcc--CCeEEEEEEeccccchHHHHHHHHHHHHhccCCC-ceEEEEEcccccccch
Confidence 23444 3788889987875332122334444444443432 1456678899999753
No 312
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=97.68 E-value=0.00016 Score=73.95 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=68.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
++.+++|.+|||||||+-..... .|. +.+ -.|+- .......++| .++.||||+|-. .-..|....-
T Consensus 9 fkllIigDsgVGKssLl~rF~dd-tFs-~sY-itTiGvDfkirTv~i~G~~VkLqIwDtAGqE-------rFrtitstyy 78 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADD-TFS-GSY-ITTIGVDFKIRTVDINGDRVKLQIWDTAGQE-------RFRTITSTYY 78 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhc-ccc-cce-EEEeeeeEEEEEeecCCcEEEEEEeecccHH-------HHHHHHHHHc
Confidence 56789999999999999665543 332 222 11222 2223344555 667899999852 1122222221
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.++|.+++|.+++....-.+-.++|+.|...+. ..+-++|-||.|..
T Consensus 79 -----rgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncd---sv~~vLVGNK~d~~ 125 (198)
T KOG0079|consen 79 -----RGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCD---SVPKVLVGNKNDDP 125 (198)
T ss_pred -----cCCceEEEEEECcchhhhHhHHHHHHHHHhcCc---cccceecccCCCCc
Confidence 269999999887753322234566666666554 35678899999974
No 313
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.65 E-value=9.6e-05 Score=83.15 Aligned_cols=66 Identities=29% Similarity=0.514 Sum_probs=50.6
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhC-----CCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFG-----EEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG-----~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
.....++.++|-||||||||||++.. ...+.+++. ||-|+ +.......+...+.++||||+.....
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~-pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAE-PGVTRRVSERIRISHRPPVYLIDTPGILVPSI 211 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCC-CCceeeehhheEeccCCceEEecCCCcCCCCC
Confidence 45788999999999999999999853 245577885 66555 55544445667799999999988654
No 314
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.00038 Score=73.68 Aligned_cols=114 Identities=20% Similarity=0.258 Sum_probs=66.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEE--EEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSV--KVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv--~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
-++++++|.+|||||.|+-..+...--.+-+ .|--+ .....++++ +++.||||+|... .+.+
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd---~TiGvefg~r~~~id~k~IKlqiwDtaGqe~-----------frsv 71 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD---LTIGVEFGARMVTIDGKQIKLQIWDTAGQES-----------FRSV 71 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCcccccc---ceeeeeeceeEEEEcCceEEEEEEecCCcHH-----------HHHH
Confidence 4789999999999999999988754322222 22222 122344555 6678999999732 1222
Q ss_pred HH-HHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RK-SIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk-~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+ +.+ ++-..|+|.++++.. +.. -...|..++.... ..--++++-||+|+..
T Consensus 72 ~~syYr--~a~GalLVydit~r~sF~h-L~~wL~D~rq~~~--~NmvImLiGNKsDL~~ 125 (216)
T KOG0098|consen 72 TRSYYR--GAAGALLVYDITRRESFNH-LTSWLEDARQHSN--ENMVIMLIGNKSDLEA 125 (216)
T ss_pred HHHHhc--cCcceEEEEEccchhhHHH-HHHHHHHHHHhcC--CCcEEEEEcchhhhhc
Confidence 22 222 466778888887532 221 2233444443321 2345667789999864
No 315
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=97.62 E-value=0.00022 Score=73.87 Aligned_cols=115 Identities=22% Similarity=0.245 Sum_probs=66.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLA 543 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~ 543 (1109)
.-.++|+|||.+|||||||+-....... .+..|.|-- ....+..++| .++.+|||+|-....
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~f---d~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFR----------- 74 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTF---DDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFR----------- 74 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhccc---CccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhh-----------
Confidence 3458999999999999999988775432 222233322 3445556666 568899999963311
Q ss_pred HHH-HHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCC
Q 036930 544 SIR-KSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAAS 600 (1109)
Q Consensus 544 ~Ik-k~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~ 600 (1109)
.+. .+. .++..+++|-++++.. +.. --.+++.|--+ ..+...-.|+|-||+|.
T Consensus 75 tLTpSyy--RgaqGiIlVYDVT~Rdtf~k-Ld~W~~Eld~Y-stn~diikmlVgNKiDk 129 (209)
T KOG0080|consen 75 TLTPSYY--RGAQGIILVYDVTSRDTFVK-LDIWLKELDLY-STNPDIIKMLVGNKIDK 129 (209)
T ss_pred ccCHhHh--ccCceeEEEEEccchhhHHh-HHHHHHHHHhh-cCCccHhHhhhcccccc
Confidence 111 111 1578888997777532 221 11233443332 22222234578999996
No 316
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=97.62 E-value=0.00052 Score=72.51 Aligned_cols=115 Identities=20% Similarity=0.166 Sum_probs=66.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc-----ceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK-----STINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v-----a~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
..++|+++|-+|||||||+|.+...+- +.++.- -.| ....+++ ..+.+|||+|--.-
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgad-Flt-----Kev~Vd~~~vtlQiWDTAGQERF---------- 71 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGAD-FLT-----KEVQVDDRSVTLQIWDTAGQERF---------- 71 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchh-hee-----eEEEEcCeEEEEEEEecccHHHh----------
Confidence 348999999999999999999986542 223331 122 2333445 44669999996321
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhC-C-CCCCeEEEEEeccCCC
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLG-S-SVWQNAILCLTHAASE 601 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG-~-~v~k~vIVVLTKaD~l 601 (1109)
+.+.- .--.++|++++|.+++....-..--..-+.+...-. . .-..|+||+-||+|..
T Consensus 72 -qsLg~-aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~ 131 (210)
T KOG0394|consen 72 -QSLGV-AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVD 131 (210)
T ss_pred -hhccc-ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCC
Confidence 11111 111379999999877743211111112222221111 1 1246899999999974
No 317
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.59 E-value=0.0041 Score=74.02 Aligned_cols=127 Identities=17% Similarity=0.289 Sum_probs=79.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCC-----C------------------------------------------
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFE-----P------------------------------------------ 503 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~-----p------------------------------------------ 503 (1109)
-||++||.-.+||+|.+..|+....|.-+... |
T Consensus 309 PRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RMr 388 (980)
T KOG0447|consen 309 PRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRMR 388 (980)
T ss_pred ceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHHH
Confidence 59999999999999999999866554322210 0
Q ss_pred -----c-eeEEEEEEEEECC---EEEEEEeCCCCCCCC---cchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCC
Q 036930 504 -----A-TSSVKVIAGLVHG---VKIRIFDTPGLRSPA---IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHN 571 (1109)
Q Consensus 504 -----g-TTrv~e~~~~i~G---~~VtLIDTPGL~ds~---~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~e 571 (1109)
| |.....+..++.| .++++||.||+..+- ........|.+.-+.++.. |++|++|+.-.+ .+.
T Consensus 389 ~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~N--PNAIILCIQDGS--VDA- 463 (980)
T KOG0447|consen 389 KNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQN--PNAIILCIQDGS--VDA- 463 (980)
T ss_pred hcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcC--CCeEEEEeccCC--cch-
Confidence 0 1111122344444 568899999998753 2233455666666666664 899999965332 322
Q ss_pred cHHHHHHHHhhhCCCCCCeEEEEEeccCCCCC
Q 036930 572 DLPLLKSLTSSLGSSVWQNAILCLTHAASEPP 603 (1109)
Q Consensus 572 D~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~p 603 (1109)
++..+--+...+.+ ..+.+|+|+||.|+.+.
T Consensus 464 ERSnVTDLVsq~DP-~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 464 ERSIVTDLVSQMDP-HGRRTIFVLTKVDLAEK 494 (980)
T ss_pred hhhhHHHHHHhcCC-CCCeeEEEEeecchhhh
Confidence 33333333333332 25899999999998764
No 318
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.00017 Score=84.58 Aligned_cols=125 Identities=22% Similarity=0.258 Sum_probs=74.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHh-------------CCCcceecCCCCceeE---E-----------EEEE--------
Q 036930 468 DFSLNILVLGKTGVGKSATINSIF-------------GEEKSTINAFEPATSS---V-----------KVIA-------- 512 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLL-------------G~~va~Vs~i~pgTTr---v-----------~e~~-------- 512 (1109)
+.+..|++||-.||||||-+..|+ +.+.|..+++..-.|+ . ...|
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~va 455 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVA 455 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChHHHH
Confidence 478999999999999999999985 2222222221100111 0 0111
Q ss_pred ------EEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC
Q 036930 513 ------GLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS 586 (1109)
Q Consensus 513 ------~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~ 586 (1109)
..-+|..|+||||+|=+.. +...+..+.++++..+||.||||-.+---+ .-..-++.+...++..
T Consensus 456 k~AI~~a~~~gfDVvLiDTAGR~~~------~~~lm~~l~k~~~~~~pd~i~~vgealvg~---dsv~q~~~fn~al~~~ 526 (587)
T KOG0781|consen 456 KEAIQEARNQGFDVVLIDTAGRMHN------NAPLMTSLAKLIKVNKPDLILFVGEALVGN---DSVDQLKKFNRALADH 526 (587)
T ss_pred HHHHHHHHhcCCCEEEEeccccccC------ChhHHHHHHHHHhcCCCceEEEehhhhhCc---HHHHHHHHHHHHHhcC
Confidence 1125688999999997653 246778888888888899999993221111 1122244444444433
Q ss_pred CCCeE--EEEEeccCCC
Q 036930 587 VWQNA--ILCLTHAASE 601 (1109)
Q Consensus 587 v~k~v--IVVLTKaD~l 601 (1109)
..... -|++||+|..
T Consensus 527 ~~~r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 527 STPRLIDGILLTKFDTV 543 (587)
T ss_pred CCccccceEEEEeccch
Confidence 21111 2679999964
No 319
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.49 E-value=0.00031 Score=91.83 Aligned_cols=122 Identities=22% Similarity=0.212 Sum_probs=72.3
Q ss_pred EEEEecCCCChhHHHHHHhCCCcceecC----C----CCceeEEEEEEEEECCEEEEEEeCCCCCCCCc-----chhhhH
Q 036930 473 ILVLGKTGVGKSATINSIFGEEKSTINA----F----EPATSSVKVIAGLVHGVKIRIFDTPGLRSPAI-----GRTVNK 539 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~~va~Vs~----i----~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~-----~~~~~e 539 (1109)
.+|||++|+||||+|+.- |... .... . ..+|..|.- |-...-+||||+|-..+.. +.....
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~-pl~~~~~~~~~~~~~~t~~c~w----wf~~~avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKF-PLAERLGAAALRGVGGTRNCDW----WFTDEAVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCC-cCchhhccccccCCCCCcccce----EecCCEEEEcCCCccccCCCcccccHHHHH
Confidence 678899999999999876 4332 2111 0 012222221 2234567999999654321 122344
Q ss_pred HHHHHHHHHHhcCCCcEEEEEecCCCC-CCCCCc--------HHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 540 KTLASIRKSIKKFPPDVVLYVDRLDTH-TRDHND--------LPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 540 eIl~~Ikk~Lk~~gpDVVLLVvrlds~-t~d~eD--------~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..+..++++-.+.+++.||+++++... ..+..+ +.-|..+...+|. ..|+.||+||||+++
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~--~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGA--RFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCC--CCCEEEEEecchhhc
Confidence 555555554344568999999887632 111111 2234556666664 479999999999873
No 320
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.48 E-value=0.00037 Score=78.21 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=22.8
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
....+..|+|+|++|+|||||++.|..
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHH
Confidence 344577899999999999999999864
No 321
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.48 E-value=8.8e-05 Score=85.54 Aligned_cols=73 Identities=26% Similarity=0.463 Sum_probs=57.3
Q ss_pred HHHhhhc--ccccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 457 EQHEIED--KDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 457 ~qlla~~--~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
...+... ...+...+++.|||-|||||||+||+|..+..+.|+.. ||-|+ .+..+ .+..|.|+|.||+.-...
T Consensus 237 ~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~-pGvT~smqeV~---Ldk~i~llDsPgiv~~~~ 312 (435)
T KOG2484|consen 237 MKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNV-PGVTRSMQEVK---LDKKIRLLDSPGIVPPSI 312 (435)
T ss_pred HHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCC-ccchhhhhhee---ccCCceeccCCceeecCC
Confidence 3444433 34588999999999999999999999999999999996 77665 44433 467899999999976543
No 322
>PRK10867 signal recognition particle protein; Provisional
Probab=97.46 E-value=0.0017 Score=76.83 Aligned_cols=120 Identities=19% Similarity=0.265 Sum_probs=62.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHh-------CCCcceecC--CCCce--------eE--EEEEEE----------------
Q 036930 469 FSLNILVLGKTGVGKSATINSIF-------GEEKSTINA--FEPAT--------SS--VKVIAG---------------- 513 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLL-------G~~va~Vs~--i~pgT--------Tr--v~e~~~---------------- 513 (1109)
.+..|+++|++|+||||++..|+ |..+..++. +.+.. .+ +..+..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 35678899999999999887775 333333322 22211 00 000000
Q ss_pred -EECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEE
Q 036930 514 -LVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAI 592 (1109)
Q Consensus 514 -~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vI 592 (1109)
...+..++||||||-.... ...+..+........|+-+++|++.. . . ...++... .|... ....-
T Consensus 179 a~~~~~DvVIIDTaGrl~~d------~~lm~eL~~i~~~v~p~evllVlda~--~-g---q~av~~a~-~F~~~-~~i~g 244 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHID------EELMDELKAIKAAVNPDEILLVVDAM--T-G---QDAVNTAK-AFNEA-LGLTG 244 (433)
T ss_pred HHhcCCCEEEEeCCCCcccC------HHHHHHHHHHHHhhCCCeEEEEEecc--c-H---HHHHHHHH-HHHhh-CCCCE
Confidence 0124679999999976532 12333333332223578889996542 2 1 12233222 22221 12345
Q ss_pred EEEeccCCCC
Q 036930 593 LCLTHAASEP 602 (1109)
Q Consensus 593 VVLTKaD~l~ 602 (1109)
+|+||.|...
T Consensus 245 iIlTKlD~~~ 254 (433)
T PRK10867 245 VILTKLDGDA 254 (433)
T ss_pred EEEeCccCcc
Confidence 6789999643
No 323
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.42 E-value=0.00049 Score=76.78 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=66.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCC---cceecCCCCcee----------EE--E--EEEE---------------EEC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEE---KSTINAFEPATS----------SV--K--VIAG---------------LVH 516 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~---va~Vs~i~pgTT----------rv--~--e~~~---------------~i~ 516 (1109)
.+-+|+++|++|+||||++..|++.- ...++-+...+. .. . .... ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 44689999999999999999886541 111111100000 00 0 0000 112
Q ss_pred CEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEe
Q 036930 517 GVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLT 596 (1109)
Q Consensus 517 G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLT 596 (1109)
+..++||||||-.... ...++.+...+....++.+++|++.+.... + +..+.+.|..- ...=++||
T Consensus 154 ~~D~ViIDt~Gr~~~~------~~~l~el~~~~~~~~~~~~~LVl~a~~~~~---d---~~~~~~~f~~~--~~~~~I~T 219 (270)
T PRK06731 154 RVDYILIDTAGKNYRA------SETVEEMIETMGQVEPDYICLTLSASMKSK---D---MIEIITNFKDI--HIDGIVFT 219 (270)
T ss_pred CCCEEEEECCCCCcCC------HHHHHHHHHHHhhhCCCeEEEEEcCccCHH---H---HHHHHHHhCCC--CCCEEEEE
Confidence 5689999999986533 123344444444446888899966553221 1 33344455542 33345599
Q ss_pred ccCCCC
Q 036930 597 HAASEP 602 (1109)
Q Consensus 597 KaD~l~ 602 (1109)
|.|...
T Consensus 220 KlDet~ 225 (270)
T PRK06731 220 KFDETA 225 (270)
T ss_pred eecCCC
Confidence 999864
No 324
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=97.39 E-value=0.00099 Score=68.69 Aligned_cols=125 Identities=18% Similarity=0.223 Sum_probs=73.1
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC-C--EEEEEEeCCCCCCCCcchhhhHHHH
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH-G--VKIRIFDTPGLRSPAIGRTVNKKTL 542 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~-G--~~VtLIDTPGL~ds~~~~~~~eeIl 542 (1109)
.++..++|+++|.-+||||+++.-|+--....-....|.--.++....+-+ | -.++|.||+|+..... +.-
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~------eLp 78 (198)
T KOG3883|consen 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ------ELP 78 (198)
T ss_pred hhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh------hhh
Confidence 456789999999999999999988763332121222121111333332222 2 4688999999977421 111
Q ss_pred HHHHHHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCC
Q 036930 543 ASIRKSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPP 603 (1109)
Q Consensus 543 ~~Ikk~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~p 603 (1109)
+.++.- +|.+++|-+..... ++ -..+|+.-.+.+...-..+++++-||+|...|
T Consensus 79 ---rhy~q~--aDafVLVYs~~d~eSf~--rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 79 ---RHYFQF--ADAFVLVYSPMDPESFQ--RVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred ---HhHhcc--CceEEEEecCCCHHHHH--HHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 123332 89999996554321 11 12334433344444445688999999998654
No 325
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.30 E-value=0.0013 Score=73.24 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=24.4
Q ss_pred cccCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 465 DDMDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 465 e~L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
...+.++-|+++|..|+||+|++..|...
T Consensus 14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 14 GAIQRPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred ccccCCcEEEEEecCCCCchhHHHHHHHH
Confidence 35667889999999999999999888643
No 326
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.0017 Score=77.62 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=94.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEE-ECCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGL-VHGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~-i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...+--|-++|.---|||||+-+|-+..++.... ...|.++--.... ..|..++|.||||.... ..+
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~-GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF-----------~aM 217 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEA-GGITQHIGAFTVTLPSGKSITFLDTPGHAAF-----------SAM 217 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhc-CCccceeceEEEecCCCCEEEEecCCcHHHH-----------HHH
Confidence 3455667899999999999999999988765444 2446554433333 27999999999997331 111
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCCCCCc-cHHHHHhhcHHHH
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPL-SYEVFVGQQSHAI 624 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~~~p~-sieefV~q~~~~L 624 (1109)
+.. -..-.|++++|+..+..-. .+.++.|+.. .....|+||.+||+|.... +|. .+.+.+.++.
T Consensus 218 RaR-GA~vtDIvVLVVAadDGVm----pQT~EaIkhA--k~A~VpiVvAinKiDkp~a-----~pekv~~eL~~~gi--- 282 (683)
T KOG1145|consen 218 RAR-GANVTDIVVLVVAADDGVM----PQTLEAIKHA--KSANVPIVVAINKIDKPGA-----NPEKVKRELLSQGI--- 282 (683)
T ss_pred Hhc-cCccccEEEEEEEccCCcc----HhHHHHHHHH--HhcCCCEEEEEeccCCCCC-----CHHHHHHHHHHcCc---
Confidence 110 0113689999987765322 2334444433 2336899999999996421 121 1122222221
Q ss_pred HHHHHHHhCCCceeccC---CCCHHHHHhhHHH
Q 036930 625 QQRISQAIGDPHLMNLN---MMHPVSLVENHQS 654 (1109)
Q Consensus 625 QelI~qc~gr~~lfn~s---~r~pv~LvEn~~l 654 (1109)
.+++.+|+.+++..+ ..+...|.++.-+
T Consensus 283 --~~E~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 283 --VVEDLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred --cHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence 245667887765332 2345556555433
No 327
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.24 E-value=0.0072 Score=71.59 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=18.7
Q ss_pred CcEEEEEecCCCChhHHHHHHh
Q 036930 470 SLNILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLL 491 (1109)
+..|+++|++|+||||++-.|+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA 120 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLA 120 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 5678899999999999976664
No 328
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0025 Score=76.25 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=77.4
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC---CEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH---GVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~---G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
+.-|.++|.---|||||+-+|-+..++.-.+ ...|.++-.++..++ ...++|+||||.-.. ..++
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~Ea-GGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF-----------t~mR 72 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEA-GGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF-----------TAMR 72 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccC-CceeeEeeeEEEEeccCCCceEEEEcCCcHHHH-----------HHHH
Confidence 3457899999999999999999887754433 245777777777774 478999999997331 1111
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.- -..=.|+++||+.++.-- .+.....++.++.. ..|+||.+||+|...
T Consensus 73 aR-Ga~vtDIaILVVa~dDGv-~pQTiEAI~hak~a-----~vP~iVAiNKiDk~~ 121 (509)
T COG0532 73 AR-GASVTDIAILVVAADDGV-MPQTIEAINHAKAA-----GVPIVVAINKIDKPE 121 (509)
T ss_pred hc-CCccccEEEEEEEccCCc-chhHHHHHHHHHHC-----CCCEEEEEecccCCC
Confidence 10 000158999998887532 22344445544433 589999999999863
No 329
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0035 Score=74.71 Aligned_cols=113 Identities=22% Similarity=0.292 Sum_probs=72.6
Q ss_pred ccccCCCcEEEEEecCCCChhHHHHHHhCCCc-ceecCCC-CceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHH
Q 036930 464 KDDMDFSLNILVLGKTGVGKSATINSIFGEEK-STINAFE-PATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 464 ~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~v-a~Vs~i~-pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
.+++.+++-++++||||+||||||.+|..+.. ..++.+. |.|.. .-.-++++++.+|. +-. .+
T Consensus 63 p~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvv------sgK~RRiTflEcp~--Dl~-------~m 127 (1077)
T COG5192 63 PKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVV------SGKTRRITFLECPS--DLH-------QM 127 (1077)
T ss_pred cccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEe------ecceeEEEEEeChH--HHH-------HH
Confidence 46678889999999999999999999986532 1222221 22211 11247788998882 210 11
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
. .+.+. +|+||++++. .+.+..+.+.+|..+..+ | ...++-|+||.|+..
T Consensus 128 i-DvaKI-----aDLVlLlIdg-nfGfEMETmEFLnil~~H-G---mPrvlgV~ThlDlfk 177 (1077)
T COG5192 128 I-DVAKI-----ADLVLLLIDG-NFGFEMETMEFLNILISH-G---MPRVLGVVTHLDLFK 177 (1077)
T ss_pred H-hHHHh-----hheeEEEecc-ccCceehHHHHHHHHhhc-C---CCceEEEEeeccccc
Confidence 1 12221 6999998543 456665666677666554 2 578889999999875
No 330
>PRK01889 GTPase RsgA; Reviewed
Probab=97.16 E-value=0.00048 Score=79.38 Aligned_cols=62 Identities=29% Similarity=0.427 Sum_probs=40.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCC------CceeEEEEEEEEECCEEEEEEeCCCCCCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFE------PATSSVKVIAGLVHGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~------pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~ 532 (1109)
.+-+++|+|.+|+|||||+|.|+|.....++.+. ..||+.. ....+.+ ...++||||+....
T Consensus 194 ~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~-~l~~l~~-~~~l~DtpG~~~~~ 261 (356)
T PRK01889 194 GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHR-ELHPLPS-GGLLIDTPGMRELQ 261 (356)
T ss_pred cCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhc-cEEEecC-CCeecCCCchhhhc
Confidence 3458999999999999999999997665554421 1133211 1112222 13588999997644
No 331
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.16 E-value=0.00012 Score=84.06 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=48.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~ 532 (1109)
..+.|.+||-|||||||+||+|-...++.|.++ ||-|.+-.+ ++ --++|.|||+||+-...
T Consensus 306 kqISVGfiGYPNvGKSSiINTLR~KkVCkvAPI-pGETKVWQY-It-LmkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIINTLRKKKVCKVAPI-PGETKVWQY-IT-LMKRIFLIDCPGVVYPS 366 (572)
T ss_pred cceeeeeecCCCCchHHHHHHHhhcccccccCC-CCcchHHHH-HH-HHhceeEecCCCccCCC
Confidence 457899999999999999999999999999998 777663111 11 13578899999987654
No 332
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.0029 Score=64.97 Aligned_cols=119 Identities=14% Similarity=0.171 Sum_probs=67.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCC-c-eeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEP-A-TSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~p-g-TTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
.+--++|+++|.+.|||+|++-.-++..- ...-+.. | --++...+-.-..+++.+|||+|... ...+...
T Consensus 18 FDymfKlliiGnssvGKTSfl~ry~ddSF-t~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEr-------yrtiTTa 89 (193)
T KOG0093|consen 18 FDYMFKLLIIGNSSVGKTSFLFRYADDSF-TSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQER-------YRTITTA 89 (193)
T ss_pred ccceeeEEEEccCCccchhhhHHhhcccc-ccceeeeeeeeEEEeEeeecccEEEEEEEecccchh-------hhHHHHH
Confidence 44456999999999999999999887542 2111100 0 01122223233457899999999733 1111111
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHH-HHHHhhhCC-CCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLL-KSLTSSLGS-SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lL-k~I~e~FG~-~v~k~vIVVLTKaD~l~ 602 (1109)
+. .+++.++++.+++... -...+ .++..+-.- ...-++|+|-||||+..
T Consensus 90 ---yy--RgamgfiLmyDitNee----Sf~svqdw~tqIktysw~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 90 ---YY--RGAMGFILMYDITNEE----SFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS 140 (193)
T ss_pred ---Hh--hccceEEEEEecCCHH----HHHHHHHHHHHheeeeccCceEEEEecccCCcc
Confidence 11 2689999997665421 11112 222222111 11258999999999743
No 333
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.0047 Score=76.96 Aligned_cols=116 Identities=17% Similarity=0.111 Sum_probs=75.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcce--ecCCC---------------CceeEEEEEEEEECC-EEEEEEeCCCCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKST--INAFE---------------PATSSVKVIAGLVHG-VKIRIFDTPGLRS 530 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~--Vs~i~---------------pgTTrv~e~~~~i~G-~~VtLIDTPGL~d 530 (1109)
.--+|.++|+..+|||||.-.|+-....+ .+... ..|-........|.+ ..|.+|||||.-|
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 33579999999999999998887332111 11111 123333455677886 9999999999988
Q ss_pred CCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 531 s~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
... ++.+.++- .|..++|++... ........+++...+. ..|.|+++||.|.+-
T Consensus 89 Ft~------EV~rslrv------lDgavvVvdave-GV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~ 142 (697)
T COG0480 89 FTI------EVERSLRV------LDGAVVVVDAVE-GVEPQTETVWRQADKY-----GVPRILFVNKMDRLG 142 (697)
T ss_pred cHH------HHHHHHHh------hcceEEEEECCC-CeeecHHHHHHHHhhc-----CCCeEEEEECccccc
Confidence 543 34444432 477777755543 2333344566666554 478999999999865
No 334
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.98 E-value=0.0033 Score=74.16 Aligned_cols=113 Identities=20% Similarity=0.236 Sum_probs=70.8
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcc-----ee-------cCC--CCc-eeEEEEEEEEECCEEEEEEeCCCCCCCCcchh
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKS-----TI-------NAF--EPA-TSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRT 536 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va-----~V-------s~i--~pg-TTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~ 536 (1109)
+|++|-.---|||||+..|+.+... .+ ++. .-| |--.......|+|.+|.+|||||.-|...+
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE-- 84 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE-- 84 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch--
Confidence 7999999999999999999865321 11 111 112 222334567789999999999999886542
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 537 VNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 537 ~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
-+.+++. .|.+|+++++..-.. +..+-+++...+. .-+-|||+||+|...
T Consensus 85 -VERvl~M---------VDgvlLlVDA~EGpM-PQTrFVlkKAl~~-----gL~PIVVvNKiDrp~ 134 (603)
T COG1217 85 -VERVLSM---------VDGVLLLVDASEGPM-PQTRFVLKKALAL-----GLKPIVVINKIDRPD 134 (603)
T ss_pred -hhhhhhh---------cceEEEEEEcccCCC-CchhhhHHHHHHc-----CCCcEEEEeCCCCCC
Confidence 2222222 688888866543222 2234445444332 245578899999743
No 335
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.95 E-value=0.0086 Score=61.20 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=40.0
Q ss_pred CEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEe
Q 036930 517 GVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLT 596 (1109)
Q Consensus 517 G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLT 596 (1109)
+..++||||||..... ...+..+..+.....++.+++|++... . ......+..+.+..+ ..-+|+|
T Consensus 82 ~~d~viiDt~g~~~~~------~~~l~~l~~l~~~~~~~~~~lVv~~~~--~-~~~~~~~~~~~~~~~-----~~~vilt 147 (173)
T cd03115 82 NFDVVIVDTAGRLQID------ENLMEELKKIKRVVKPDEVLLVVDAMT--G-QDAVNQAKAFNEALG-----ITGVILT 147 (173)
T ss_pred CCCEEEEECcccchhh------HHHHHHHHHHHhhcCCCeEEEEEECCC--C-hHHHHHHHHHHhhCC-----CCEEEEE
Confidence 5678999999986421 123333433332234788999977532 1 112233333333322 3456789
Q ss_pred ccCCCC
Q 036930 597 HAASEP 602 (1109)
Q Consensus 597 KaD~l~ 602 (1109)
|.|...
T Consensus 148 k~D~~~ 153 (173)
T cd03115 148 KLDGDA 153 (173)
T ss_pred CCcCCC
Confidence 999754
No 336
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0084 Score=72.35 Aligned_cols=120 Identities=23% Similarity=0.227 Sum_probs=74.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHh---CCC-----------cceec----------------CCCCceeEEEEEEEEECC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIF---GEE-----------KSTIN----------------AFEPATSSVKVIAGLVHG 517 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLL---G~~-----------va~Vs----------------~i~pgTTrv~e~~~~i~G 517 (1109)
...++.+++|...+|||||+-.|+ |.- .+..+ .....|..+...+++-+-
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 366899999999999999998875 220 00000 011234345566666677
Q ss_pred EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCC----C-CCcHHHHHHHHhhhCCCCCCeEE
Q 036930 518 VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTR----D-HNDLPLLKSLTSSLGSSVWQNAI 592 (1109)
Q Consensus 518 ~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~----d-~eD~~lLk~I~e~FG~~v~k~vI 592 (1109)
..++|+|+||..+... .+ +.. ...+|+.++|++.+...+ + ..+.+-...+...+| ...+|
T Consensus 255 ~~~tliDaPGhkdFi~------nm---i~g---~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg---i~qli 319 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIP------NM---ISG---ASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG---ISQLI 319 (603)
T ss_pred eeEEEecCCCccccch------hh---hcc---ccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC---cceEE
Confidence 8899999999766321 11 111 124788888877764221 1 112223334445556 57999
Q ss_pred EEEeccCCCC
Q 036930 593 LCLTHAASEP 602 (1109)
Q Consensus 593 VVLTKaD~l~ 602 (1109)
|++||.|...
T Consensus 320 vaiNKmD~V~ 329 (603)
T KOG0458|consen 320 VAINKMDLVS 329 (603)
T ss_pred EEeecccccC
Confidence 9999999864
No 337
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.005 Score=66.69 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=66.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCCC-cceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEE-KSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~-va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
-.|+|+|++++|||+|+--|.-.. .. ..|.. .......++...+++||-||-.. ...+. ..+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~------TvtSiepn~a~~r~gs~~~~LVD~PGH~r------lR~kl----~e~ 102 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRG------TVTSIEPNEATYRLGSENVTLVDLPGHSR------LRRKL----LEY 102 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccC------eeeeeccceeeEeecCcceEEEeCCCcHH------HHHHH----HHH
Confidence 479999999999999997766431 11 11221 33455555666689999999743 11122 222
Q ss_pred Hh-cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhh----CCCCCCeEEEEEeccCCCC
Q 036930 549 IK-KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSL----GSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk-~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~F----G~~v~k~vIVVLTKaD~l~ 602 (1109)
++ ...+-.|+||+ |+..+..+-..+.+.+.... +.....+++|+.||.|+..
T Consensus 103 ~~~~~~akaiVFVV--DSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 103 LKHNYSAKAIVFVV--DSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred ccccccceeEEEEE--eccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 22 12366788884 44333333333333333332 2233468899999999875
No 338
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.77 E-value=0.0016 Score=71.37 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=15.0
Q ss_pred EEecCCCChhHHHHHHh
Q 036930 475 VLGKTGVGKSATINSIF 491 (1109)
Q Consensus 475 LVGkTGVGKSSLINaLL 491 (1109)
|+|++|+||||+++++.
T Consensus 1 ViGpaGSGKTT~~~~~~ 17 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLS 17 (238)
T ss_dssp -EESTTSSHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHH
Confidence 68999999999999985
No 339
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.75 E-value=0.0013 Score=72.97 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHh
Q 036930 469 FSLNILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLL 491 (1109)
...+|.|.|+||+|||||++.|.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~ 50 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALI 50 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHH
Confidence 46799999999999999999985
No 340
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.003 Score=82.00 Aligned_cols=124 Identities=19% Similarity=0.175 Sum_probs=71.2
Q ss_pred EEEEecCCCChhHHHHHHhCCCcce-----ecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCc-----chhhhHHHH
Q 036930 473 ILVLGKTGVGKSATINSIFGEEKST-----INAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAI-----GRTVNKKTL 542 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~~va~-----Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~-----~~~~~eeIl 542 (1109)
-+|||++|+||||++..---+.... .+-..++|..|.- +-+-.-++|||.|=.-+.. +.......+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdw----wf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDW----WFTDEAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCc----ccccceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 5778999999999986543222211 1111234333431 2345667999999544331 122334455
Q ss_pred HHHHHHHhcCCCcEEEEEecCCC-CCCCCCcH-H-------HHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 543 ASIRKSIKKFPPDVVLYVDRLDT-HTRDHNDL-P-------LLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 543 ~~Ikk~Lk~~gpDVVLLVvrlds-~t~d~eD~-~-------lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++++-...+.+.|++.+++.. .+.+..+. . -|+.|.+.++ +..|++|++||.|+++
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~--~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH--ARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEecccccc
Confidence 55555444446898999877763 22222222 1 1344555554 3479999999999986
No 341
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.73 E-value=0.016 Score=68.25 Aligned_cols=184 Identities=20% Similarity=0.236 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhCCC---Cc---hhhhHHHHHHHHHHHhhhcccc----cC
Q 036930 399 KRKIEKIQILRVKFLRLVQRLGHSFDDSVVAQVLYRLALALGGH---SS---QAVSIEAAKRVAEQHEIEDKDD----MD 468 (1109)
Q Consensus 399 g~l~~kLe~~RvkLLrLlarLgaspEddlvaqVL~rl~~a~~~~---~~---~~~~le~a~~~a~qlla~~~e~----L~ 468 (1109)
..+.+.++++|.-||... -.-.+|..+..++....... .+ ...-+..+.+++-.++...... .+
T Consensus 25 ~~i~e~~reir~ALLeAD------Vnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~llG~~~~~~~l~~~ 98 (451)
T COG0541 25 KDVKEALREIRRALLEAD------VNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKLLGGENSELNLAKK 98 (451)
T ss_pred HHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHhCCCCcccccCCC
Confidence 445556666666665432 12234445555544322111 11 1112234555666666532111 23
Q ss_pred CCcEEEEEecCCCChhHHHHHHh------CCCcceecC--CCCcee--------EEE-EEEEE-----------------
Q 036930 469 FSLNILVLGKTGVGKSATINSIF------GEEKSTINA--FEPATS--------SVK-VIAGL----------------- 514 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLL------G~~va~Vs~--i~pgTT--------rv~-e~~~~----------------- 514 (1109)
.+..|+++|--|+||||+.-.|+ |..+..|+. +.|... ++. ..+..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 57889999999999999998886 333333332 222200 000 11111
Q ss_pred -ECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEE
Q 036930 515 -VHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAIL 593 (1109)
Q Consensus 515 -i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIV 593 (1109)
..+..++||||+|=... .+.++.+++..-....||-+|||++... ..+ -....+.+.+..+ -+=|
T Consensus 179 k~~~~DvvIvDTAGRl~i------de~Lm~El~~Ik~~~~P~E~llVvDam~-GQd--A~~~A~aF~e~l~-----itGv 244 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHI------DEELMDELKEIKEVINPDETLLVVDAMI-GQD--AVNTAKAFNEALG-----ITGV 244 (451)
T ss_pred HHcCCCEEEEeCCCcccc------cHHHHHHHHHHHhhcCCCeEEEEEeccc-chH--HHHHHHHHhhhcC-----CceE
Confidence 12357999999996542 2345555544333346999999955432 211 2233444444322 2335
Q ss_pred EEeccCCCC
Q 036930 594 CLTHAASEP 602 (1109)
Q Consensus 594 VLTKaD~l~ 602 (1109)
|+||.|...
T Consensus 245 IlTKlDGda 253 (451)
T COG0541 245 ILTKLDGDA 253 (451)
T ss_pred EEEcccCCC
Confidence 699999754
No 342
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.66 E-value=0.0052 Score=62.89 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.0
Q ss_pred EEEEecCCCChhHHHHHHhCC
Q 036930 473 ILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~ 493 (1109)
++|+|..|+|||||++.|+..
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999999865
No 343
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.65 E-value=0.014 Score=75.50 Aligned_cols=103 Identities=12% Similarity=0.093 Sum_probs=61.0
Q ss_pred CChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC------------------EEEEEEeCCCCCCCCcchhhhHHHH
Q 036930 481 VGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG------------------VKIRIFDTPGLRSPAIGRTVNKKTL 542 (1109)
Q Consensus 481 VGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G------------------~~VtLIDTPGL~ds~~~~~~~eeIl 542 (1109)
++||||+-+|.+..++.-.+ ...|.++--+...++. ..+.||||||.... ..+
T Consensus 472 ~~KTtLLD~iR~t~v~~~Ea-GGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F-------~~l- 542 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEA-GGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF-------TSL- 542 (1049)
T ss_pred cccccHHHHHhCCCcccccC-CCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH-------HHH-
Confidence 45999999999988753322 2335443333322221 13899999995321 011
Q ss_pred HHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 543 ASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 543 ~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..... ..+|++++|++++. .........++.+... ..|+|+|+||+|+.+
T Consensus 543 --r~~g~--~~aDivlLVVDa~~-Gi~~qT~e~I~~lk~~-----~iPiIVViNKiDL~~ 592 (1049)
T PRK14845 543 --RKRGG--SLADLAVLVVDINE-GFKPQTIEAINILRQY-----KTPFVVAANKIDLIP 592 (1049)
T ss_pred --HHhhc--ccCCEEEEEEECcc-cCCHhHHHHHHHHHHc-----CCCEEEEEECCCCcc
Confidence 11111 24899999987764 2233344555555432 368999999999864
No 344
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.65 E-value=0.014 Score=66.88 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+..|+++|-.|+||||+|..|+.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~ 161 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAK 161 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHH
Confidence 477899999999999999999973
No 345
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=96.52 E-value=0.0053 Score=63.16 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=69.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCc-ceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEK-STINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~v-a~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
...+++.|+|--++||||++|.++.-.. .-+.+ |.-......+-+...+.++|.||-.... .+- .
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmip----tvGfnmrk~tkgnvtiklwD~gGq~rfr-------smW---e 83 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIP----TVGFNMRKVTKGNVTIKLWDLGGQPRFR-------SMW---E 83 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcc----cccceeEEeccCceEEEEEecCCCccHH-------HHH---H
Confidence 4457999999999999999999985221 11111 1113344445567889999999975432 111 1
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++.+ +.++++||++......-..-+.-|+.+... ..-...|++|+-||.|..
T Consensus 84 rycR--~v~aivY~VDaad~~k~~~sr~EL~~LL~k-~~l~gip~LVLGnK~d~~ 135 (186)
T KOG0075|consen 84 RYCR--GVSAIVYVVDAADPDKLEASRSELHDLLDK-PSLTGIPLLVLGNKIDLP 135 (186)
T ss_pred HHhh--cCcEEEEEeecCCcccchhhHHHHHHHhcc-hhhcCCcEEEecccccCc
Confidence 2222 489999997665432211122223333221 111246899999999974
No 346
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=96.48 E-value=0.0034 Score=67.35 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=71.1
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC-CEE--EEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH-GVK--IRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~-G~~--VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
.++++|||-.++|||+++-..+.. .|... +.|.-..-......++ |++ +.+|||+|-.+-+ . ++
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~-~fp~~-yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYD-------r----lR 70 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN-AFPEE-YVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYD-------R----LR 70 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC-cCccc-ccCeEEccceEEEEecCCCEEEEeeeecCCCcccc-------c----cc
Confidence 579999999999999998766532 22211 1122112223445564 654 6799999875532 1 21
Q ss_pred HHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+.-+..|+||+|.++.... +..--...+-.++..+ ...|+|+|.||.|+.
T Consensus 71 -plsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c---p~vpiiLVGtk~DLr 122 (198)
T KOG0393|consen 71 -PLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC---PNVPIILVGTKADLR 122 (198)
T ss_pred -ccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC---CCCCEEEEeehHHhh
Confidence 23445789999998877532 2111223445555554 247999999999986
No 347
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.0069 Score=63.42 Aligned_cols=118 Identities=14% Similarity=0.071 Sum_probs=72.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
.+...+++++|--|+|||||++.|-.......-+ |-++......+.|.+++.+|.-|-.. ..+.-+
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP----TlHPTSE~l~Ig~m~ftt~DLGGH~q----------Arr~wk 82 (193)
T KOG0077|consen 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELSIGGMTFTTFDLGGHLQ----------ARRVWK 82 (193)
T ss_pred hccCceEEEEeecCCchhhHHHHHccccccccCC----CcCCChHHheecCceEEEEccccHHH----------HHHHHH
Confidence 4556799999999999999999987655432222 33333456678899999999877632 122233
Q ss_pred HHHhcCCCcEEEEEecCCC-CCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDT-HTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds-~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+|+-. +|.++|.+++-. .++. +-+.-++.+... -.-.+-|++|+.||+|...
T Consensus 83 dyf~~--v~~iv~lvda~d~er~~-es~~eld~ll~~-e~la~vp~lilgnKId~p~ 135 (193)
T KOG0077|consen 83 DYFPQ--VDAIVYLVDAYDQERFA-ESKKELDALLSD-ESLATVPFLILGNKIDIPY 135 (193)
T ss_pred HHHhh--hceeEeeeehhhHHHhH-HHHHHHHHHHhH-HHHhcCcceeecccccCCC
Confidence 44432 677777755433 2222 122222222211 0124689999999999744
No 348
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=96.41 E-value=0.017 Score=63.35 Aligned_cols=126 Identities=20% Similarity=0.220 Sum_probs=68.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEE-CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLV-HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i-~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
-+|+|+|+||+||||+=-.++....+.-.....+|-.+.-.+... ++.-+.+||.-|-.. ..+..+..-+..+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~------fmen~~~~q~d~i 78 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEE------FMENYLSSQEDNI 78 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHH------HHHHHHhhcchhh
Confidence 379999999999999887777544332222213333343333333 336677888866421 1111111111111
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHH-HHhhhCCCCCCeEEEEEeccCCCCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKS-LTSSLGSSVWQNAILCLTHAASEPPD 604 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~-I~e~FG~~v~k~vIVVLTKaD~l~pd 604 (1109)
- +..++++||.++....... |....+. +...+.....-.+.+.++|.|+...+
T Consensus 79 F-~nV~vli~vFDves~e~~~-D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 79 F-RNVQVLIYVFDVESREMEK-DFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred h-eeheeeeeeeeccchhhhh-hHHHHHHHHHHHHhcCCcceEEEEEeechhcccc
Confidence 1 2478999998777654432 3333222 22222233345677889999998644
No 349
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.33 E-value=0.013 Score=66.43 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHh
Q 036930 468 DFSLNILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLL 491 (1109)
....+|.+.|.||+|||||+-.|.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~ 72 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALG 72 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHH
Confidence 455789999999999999999885
No 350
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.20 E-value=0.018 Score=58.72 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.4
Q ss_pred EEEEEecCCCChhHHHHHHhC
Q 036930 472 NILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG 492 (1109)
+|.++|++|+||||++..|..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 378999999999999998864
No 351
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.19 E-value=0.015 Score=55.55 Aligned_cols=103 Identities=24% Similarity=0.268 Sum_probs=56.1
Q ss_pred EEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcC
Q 036930 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKF 552 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~ 552 (1109)
|+|.|++|+|||+++..|+..- +.++.-+|.+-+..... ......+...+.++ +..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------------------~~~~~~i~~~~~~~~~~-~~~~~~i~~~~~~~-~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------------------GFPFIEIDGSELISSYA-GDSEQKIRDFFKKA-KKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------------------TSEEEEEETTHHHTSST-THHHHHHHHHHHHH-HHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------------------ccccccccccccccccc-cccccccccccccc-ccc
Confidence 6899999999999999998642 13345566666653221 11223333333332 222
Q ss_pred CCcEEEEEecCCCCCCCC------CcHHHHHHHHhhhCCCCC--CeEEEEEeccC
Q 036930 553 PPDVVLYVDRLDTHTRDH------NDLPLLKSLTSSLGSSVW--QNAILCLTHAA 599 (1109)
Q Consensus 553 gpDVVLLVvrlds~t~d~------eD~~lLk~I~e~FG~~v~--k~vIVVLTKaD 599 (1109)
....||++..++...... ....++..+...+..... .++++|+|-.+
T Consensus 57 ~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 57 AKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp STSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 225888988877432211 123445555555543222 34666665443
No 352
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.02 Score=68.94 Aligned_cols=114 Identities=13% Similarity=0.092 Sum_probs=69.3
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcce--------------ecCCCCceeEEEEEEEEECC---EEEEEEeCCCCCCCCc
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKST--------------INAFEPATSSVKVIAGLVHG---VKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~--------------Vs~i~pgTTrv~e~~~~i~G---~~VtLIDTPGL~ds~~ 533 (1109)
-++.+|-.---|||||.-.|+....++ +..-...|-..+.....+.+ .-+.+|||||.-|...
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 368899999999999999997543321 11112234444444444444 7889999999988653
Q ss_pred chhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 534 GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 534 ~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++.+.+.. .+.+|+|++... .. +.+.+..+...|.. .-.+|.|+||+|+..
T Consensus 141 ------EVsRslaa------c~G~lLvVDA~q-Gv---qAQT~anf~lAfe~--~L~iIpVlNKIDlp~ 191 (650)
T KOG0462|consen 141 ------EVSRSLAA------CDGALLVVDASQ-GV---QAQTVANFYLAFEA--GLAIIPVLNKIDLPS 191 (650)
T ss_pred ------eehehhhh------cCceEEEEEcCc-Cc---hHHHHHHHHHHHHc--CCeEEEeeeccCCCC
Confidence 23333432 477778865543 22 23333333333322 357899999999854
No 353
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=96.15 E-value=0.013 Score=61.39 Aligned_cols=121 Identities=16% Similarity=0.169 Sum_probs=64.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEE-CC--EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLV-HG--VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i-~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
...+|+++||.+-||||+|+...+.-+-+..++..-|.. ......++ .| +++.+|||+|-.. .+.
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvd-ffarlie~~pg~riklqlwdtagqer-----------frs 73 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVD-FFARLIELRPGYRIKLQLWDTAGQER-----------FRS 73 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchH-HHHHHHhcCCCcEEEEEEeeccchHH-----------HHH
Confidence 345799999999999999999988655444444211110 00000111 22 6788999998622 222
Q ss_pred HHH-HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRK-SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk-~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
|.+ +-+ ..-.+|+|.+++....-+.-...++..+-..+.....-+.+|-+|+|+..
T Consensus 74 itksyyr--nsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 74 ITKSYYR--NSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred HHHHHhh--cccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 222 222 23456777666653322222334444443333222223446778999753
No 354
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.033 Score=57.74 Aligned_cols=84 Identities=26% Similarity=0.373 Sum_probs=48.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEE--EEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVK--VIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTL 542 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~--e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl 542 (1109)
.+.-++++|+|+.|.|||-|+....... ++-. .+.|.-+. .....+.| +++.+|||+|-.. .
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~k-fkDd--ssHTiGveFgSrIinVGgK~vKLQIWDTAGQEr-----------F 71 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENK-FKDD--SSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQER-----------F 71 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhh-hccc--ccceeeeeecceeeeecCcEEEEEEeecccHHH-----------H
Confidence 3455899999999999999998776432 2211 12222221 11223334 6788999998622 2
Q ss_pred HHHHHHHhcCCCcEEEEEecCCC
Q 036930 543 ASIRKSIKKFPPDVVLYVDRLDT 565 (1109)
Q Consensus 543 ~~Ikk~Lk~~gpDVVLLVvrlds 565 (1109)
+.+.+..- .++-..|+|.+++.
T Consensus 72 RSVtRsYY-RGAAGAlLVYD~Ts 93 (214)
T KOG0086|consen 72 RSVTRSYY-RGAAGALLVYDITS 93 (214)
T ss_pred HHHHHHHh-ccccceEEEEeccc
Confidence 22222111 25666778866664
No 355
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.96 E-value=0.024 Score=60.15 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
...|+|+|.+|+|||||++.|+..
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999854
No 356
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=95.89 E-value=0.0083 Score=66.60 Aligned_cols=104 Identities=19% Similarity=0.245 Sum_probs=68.8
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcch-hhhHHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGR-TVNKKTLASIRKSI 549 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~-~~~eeIl~~Ikk~L 549 (1109)
++-++|-|.|||||+++.|+|... .|.++ -+||- +......++|-++.+.|.||+.+.+.+. ...+++..-.+
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s-~vasy-efttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavar--- 135 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFS-EVAAY-EFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVAR--- 135 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCC-ccccc-cceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEee---
Confidence 889999999999999999999764 55554 44543 4445556789999999999998865322 22222222111
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS 586 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~ 586 (1109)
..+++++|+++-. .+ ...++++.-.+-||.+
T Consensus 136 ---tcnli~~vld~~k-p~--~hk~~ie~eleg~gir 166 (358)
T KOG1487|consen 136 ---TCNLIFIVLDVLK-PL--SHKKIIEKELEGFGIR 166 (358)
T ss_pred ---cccEEEEEeeccC-cc--cHHHHHHHhhhcceee
Confidence 2478888854432 22 2456777666777754
No 357
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.86 E-value=0.0057 Score=61.28 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=37.2
Q ss_pred EEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCC
Q 036930 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGL 528 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL 528 (1109)
|+|+|++|+||||+++.|+...........+.||+.. ...+.+|....+++...+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p-~~~e~~g~~~~~v~~~~~ 56 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKP-RPGEVDGVDYHFVSKEEF 56 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCC-CCCccCCceeEEeCHHHH
Confidence 6899999999999999999864322222235566622 233467788888875544
No 358
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.86 E-value=0.05 Score=60.97 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=22.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
..+-.|+|+|++||||||++..|+..-
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999998643
No 359
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.78 E-value=0.064 Score=60.82 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+.|.|+|++|+|||||++.|++.
T Consensus 104 ~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 104 QLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 467889999999999999988764
No 360
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=95.78 E-value=0.027 Score=57.84 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=55.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC-EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG-VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G-~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
+..+||+++|--|+||+|++.-|.++++..+.+.....+ ......| .++.|+|.-|-+.-. .+ -.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~----k~v~~~g~f~LnvwDiGGqr~IR-------py---Ws 80 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT----KKVEYDGTFHLNVWDIGGQRGIR-------PY---WS 80 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce----EEEeecCcEEEEEEecCCccccc-------hh---hh
Confidence 667999999999999999999999998765554322222 2334445 899999998764421 11 12
Q ss_pred HHHhcCCCcEEEEEecCC
Q 036930 547 KSIKKFPPDVVLYVDRLD 564 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrld 564 (1109)
.+.. ..|.++||++-+
T Consensus 81 NYye--nvd~lIyVIDS~ 96 (185)
T KOG0074|consen 81 NYYE--NVDGLIYVIDST 96 (185)
T ss_pred hhhh--ccceEEEEEeCC
Confidence 2222 389999997643
No 361
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.2 Score=58.68 Aligned_cols=90 Identities=20% Similarity=0.291 Sum_probs=53.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC------CCcceecC--CCCc---------eeEEEEEEEEE----------------
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG------EEKSTINA--FEPA---------TSSVKVIAGLV---------------- 515 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG------~~va~Vs~--i~pg---------TTrv~e~~~~i---------------- 515 (1109)
.+-.|+++|--|+||||++-.|+- ...+.+.. +.++ |..-..+|+.+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 445688999999999999998863 22222221 1111 11111223221
Q ss_pred --CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCC
Q 036930 516 --HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLD 564 (1109)
Q Consensus 516 --~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrld 564 (1109)
++..++|+||.|=+... ...+.+++.+.+...||.||||++..
T Consensus 180 Kke~fdvIIvDTSGRh~qe------~sLfeEM~~v~~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQE------ASLFEEMKQVSKAIKPDEIIFVMDAS 224 (483)
T ss_pred HhcCCcEEEEeCCCchhhh------HHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 34779999999976533 23444444443444699999996543
No 362
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=95.60 E-value=0.0066 Score=63.07 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=68.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEEC--CEEEEEEeCCCCCCCC-cchhhhHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVH--GVKIRIFDTPGLRSPA-IGRTVNKKTL 542 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i~--G~~VtLIDTPGL~ds~-~~~~~~eeIl 542 (1109)
...++|+|+|.--||||||+=..+. +.|.-..+ .|.. .......+. ...+.||||+|-.... ..+
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~E-nkFn~kHl--sTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP------- 80 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVE-NKFNCKHL--STLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP------- 80 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHH-hhcchhhH--HHHHHHHhhcccccccceeeeeeeeccchHhhhccCc-------
Confidence 4578999999999999999866553 22221111 0100 111112222 3557899999964321 111
Q ss_pred HHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 543 ASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 543 ~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
|--.+.+..|+|.+++....-..-..++..|..++|.. .-++||-||+|+-
T Consensus 81 ------IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLE 131 (218)
T KOG0088|consen 81 ------IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLE 131 (218)
T ss_pred ------eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHH
Confidence 11125788899987775332122345677778887754 4578899999973
No 363
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.56 E-value=0.091 Score=62.17 Aligned_cols=114 Identities=18% Similarity=0.128 Sum_probs=72.8
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecC-CCCcee-EEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINA-FEPATS-SVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~-i~pgTT-rv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
.|+..|.---|||||+.+++|.....-.. -.-||| ...-++.......+.|||.||..+. +...+. -
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~---------i~~mia-g- 70 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF---------ISNLLA-G- 70 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH---------HHHHHh-h-
Confidence 47788999999999999999864322111 123444 4656666677779999999998541 111121 1
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
-+.+|..++|++.+. .......+.+. +.+.|| .++.|||+||+|...
T Consensus 71 -~~~~d~alLvV~~de-Gl~~qtgEhL~-iLdllg---i~~giivltk~D~~d 117 (447)
T COG3276 71 -LGGIDYALLVVAADE-GLMAQTGEHLL-ILDLLG---IKNGIIVLTKADRVD 117 (447)
T ss_pred -hcCCceEEEEEeCcc-CcchhhHHHHH-HHHhcC---CCceEEEEecccccc
Confidence 135888888877652 23222333332 345666 478899999999874
No 364
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.0067 Score=64.59 Aligned_cols=54 Identities=28% Similarity=0.408 Sum_probs=38.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDT 525 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDT 525 (1109)
.+.-|+|.||+||||||+++.|+....+..+- +.|||. ...++++|+...||+.
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SV--S~TTR~-pR~gEv~G~dY~Fvs~ 56 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSV--SATTRK-PRPGEVDGVDYFFVTE 56 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEE--EeccCC-CCCCCcCCceeEeCCH
Confidence 45678999999999999999999887433332 567773 2345667777666543
No 365
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.021 Score=60.46 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=67.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
...+|+++|--|+||||+++.|--.+...+.+ |--.......+.+..+++||.-|-..-. .+ -+.+
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vttvP----TiGfnVE~v~ykn~~f~vWDvGGq~k~R-------~l---W~~Y 81 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTVP----TIGFNVETVEYKNISFTVWDVGGQEKLR-------PL---WKHY 81 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccCCC----ccccceeEEEEcceEEEEEecCCCcccc-------cc---hhhh
Confidence 45799999999999999999885444332211 2223445556779999999998873311 01 1122
Q ss_pred HhcCCCcEEEEEecCCC-CCCCCCcHHHHHHHHhhhCCC--CCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDT-HTRDHNDLPLLKSLTSSLGSS--VWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds-~t~d~eD~~lLk~I~e~FG~~--v~k~vIVVLTKaD~l 601 (1109)
.. ..+.++||++-.. .++.. .-+.+...+... ...++++..||-|..
T Consensus 82 ~~--~t~~lIfVvDS~Dr~Ri~e----ak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 82 FQ--NTQGLIFVVDSSDRERIEE----AKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred cc--CCcEEEEEEeCCcHHHHHH----HHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 22 3688888854432 22211 122222232222 246888889999974
No 366
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=95.48 E-value=0.078 Score=65.03 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=66.2
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecC-----CC-Cce----------eEEEEEEEE---ECC--EEEEEEeCCCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINA-----FE-PAT----------SSVKVIAGL---VHG--VKIRIFDTPGLR 529 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~-----i~-pgT----------Trv~e~~~~---i~G--~~VtLIDTPGL~ 529 (1109)
.+|+|+|.-+.|||+|+..|..+..-.... .. +.| -+....... .+| +-+.++||||..
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcc
Confidence 578899999999999999998765422110 00 111 000000111 122 457899999986
Q ss_pred CCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 530 SPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 530 ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+.. .++...++ -.|.+++|+++-. ...-+..++++..... ..++++|+||.|.+-
T Consensus 209 nF~------DE~ta~l~------~sDgvVlvvDv~E-GVmlntEr~ikhaiq~-----~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 209 NFS------DETTASLR------LSDGVVLVVDVAE-GVMLNTERIIKHAIQN-----RLPIVVVINKVDRLI 263 (971)
T ss_pred cch------HHHHHHhh------hcceEEEEEEccc-CceeeHHHHHHHHHhc-----cCcEEEEEehhHHHH
Confidence 632 13333332 2798888866542 2222234455443332 378999999999863
No 367
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.46 E-value=0.0076 Score=61.65 Aligned_cols=56 Identities=27% Similarity=0.376 Sum_probs=37.3
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGL 528 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL 528 (1109)
-.|+|+|++|+||||+++.|++........ .+.||+.. ..+...|..+.++++..+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~-~~~~tr~~-~~g~~~~~~~~~~~~~~~ 57 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFS-ISATTRKP-RPGEVDGVDYFFVSKEEF 57 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcccccc-ccceeeCC-CCCCcCCcEEEEecHHHH
Confidence 358899999999999999999865433222 24566521 133456677777766554
No 368
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.46 E-value=0.11 Score=59.78 Aligned_cols=117 Identities=14% Similarity=0.264 Sum_probs=64.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC--CcceecCCCCceeE-EEEE-----EEEE--------CCEEEEEEeCCCCCCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE--EKSTINAFEPATSS-VKVI-----AGLV--------HGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~--~va~Vs~i~pgTTr-v~e~-----~~~i--------~G~~VtLIDTPGL~ds~ 532 (1109)
..++|.++|.-.+||+||..+|..- ..+- ......|+| +..- .... ...++++||.||...
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAF-Dk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas-- 82 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAF-DKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS-- 82 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhh-ccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH--
Confidence 3489999999999999999998632 2111 111111222 1100 0001 125679999999732
Q ss_pred cchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCC
Q 036930 533 IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPD 604 (1109)
Q Consensus 533 ~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd 604 (1109)
..+.++.... -.|+.++|+++..-..+. ..+.| .| |....++.+||+||+|.++.+
T Consensus 83 ----LIRtiiggaq------iiDlm~lviDv~kG~QtQ-tAEcL-ii----g~~~c~klvvvinkid~lpE~ 138 (522)
T KOG0461|consen 83 ----LIRTIIGGAQ------IIDLMILVIDVQKGKQTQ-TAECL-II----GELLCKKLVVVINKIDVLPEN 138 (522)
T ss_pred ----HHHHHHhhhh------eeeeeeEEEehhcccccc-cchhh-hh----hhhhccceEEEEeccccccch
Confidence 1122221111 168899997776322111 11111 11 223357899999999998743
No 369
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.078 Score=54.54 Aligned_cols=112 Identities=14% Similarity=0.140 Sum_probs=64.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
.++|+.+|-+++||||++-.|.-.....+ -.|+-.......+.+..+.++|.-|-.. +...-+.+.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~----ipTvGFnvetVtykN~kfNvwdvGGqd~----------iRplWrhYy 82 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTT----IPTVGFNVETVTYKNVKFNVWDVGGQDK----------IRPLWRHYY 82 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCccc----ccccceeEEEEEeeeeEEeeeeccCchh----------hhHHHHhhc
Confidence 68999999999999999999864332111 1233344555667889999999877532 111112222
Q ss_pred hcCCCcEEEEEecCCCC-CCCCCcHHHHHHHHhhhCCCCC--CeEEEEEeccCCC
Q 036930 550 KKFPPDVVLYVDRLDTH-TRDHNDLPLLKSLTSSLGSSVW--QNAILCLTHAASE 601 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~-t~d~eD~~lLk~I~e~FG~~v~--k~vIVVLTKaD~l 601 (1109)
.+-..++||++.... +.+ ..-..+..+.+.... -+++|..||-|+.
T Consensus 83 --~gtqglIFV~Dsa~~dr~e----eAr~ELh~ii~~~em~~~~~LvlANkQDlp 131 (180)
T KOG0071|consen 83 --TGTQGLIFVVDSADRDRIE----EARNELHRIINDREMRDAIILILANKQDLP 131 (180)
T ss_pred --cCCceEEEEEeccchhhHH----HHHHHHHHHhCCHhhhcceEEEEecCcccc
Confidence 245677788544322 221 122233333333222 3566778999974
No 370
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.042 Score=67.92 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=71.4
Q ss_pred cccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEE------------------CCEEEEEEeC
Q 036930 465 DDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLV------------------HGVKIRIFDT 525 (1109)
Q Consensus 465 e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i------------------~G~~VtLIDT 525 (1109)
+.|+.++ ++++|.--+|||-|+..|.+.++ .-+.+ .|.|. +--.+... .-.-+.+|||
T Consensus 471 ~~lRSPI-cCilGHVDTGKTKlld~ir~tNV-qegea-ggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdt 547 (1064)
T KOG1144|consen 471 ENLRSPI-CCILGHVDTGKTKLLDKIRGTNV-QEGEA-GGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDT 547 (1064)
T ss_pred hhcCCce-EEEeecccccchHHHHHhhcccc-ccccc-cceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecC
Confidence 4555443 67889999999999999998766 33332 33333 22222211 1134789999
Q ss_pred CCCCCCCcchhhhHHHHHHHHH-HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 526 PGLRSPAIGRTVNKKTLASIRK-SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 526 PGL~ds~~~~~~~eeIl~~Ikk-~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
||.-... .++. ..+ -.|+.|+|+++- ..+.+.....+..|... ..|+||.+||+|.+-
T Consensus 548 pghEsFt-----------nlRsrgss--lC~~aIlvvdIm-hGlepqtiESi~lLR~r-----ktpFivALNKiDRLY 606 (1064)
T KOG1144|consen 548 PGHESFT-----------NLRSRGSS--LCDLAILVVDIM-HGLEPQTIESINLLRMR-----KTPFIVALNKIDRLY 606 (1064)
T ss_pred CCchhhh-----------hhhhcccc--ccceEEEEeehh-ccCCcchhHHHHHHHhc-----CCCeEEeehhhhhhc
Confidence 9953211 1111 111 258888987664 34544455566666554 579999999999873
No 371
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.075 Score=61.48 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=71.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecC-------C-------------------------CCceeEEEEEEEEE
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINA-------F-------------------------EPATSSVKVIAGLV 515 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~-------i-------------------------~pgTTrv~e~~~~i 515 (1109)
+..+|++-+|.---||||||-.|+-.......+ . ...|-.+.-.|..-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456899999999999999999987543321100 0 01233343344445
Q ss_pred CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEE
Q 036930 516 HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCL 595 (1109)
Q Consensus 516 ~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVL 595 (1109)
.-++++|.||||...- .+.+.. -...+|+.+++++.. ...- ++-+--..|...+| .+++++.+
T Consensus 84 ~KRkFIiADTPGHeQY----------TRNMaT--GASTadlAIlLVDAR-~Gvl-~QTrRHs~I~sLLG---IrhvvvAV 146 (431)
T COG2895 84 EKRKFIIADTPGHEQY----------TRNMAT--GASTADLAILLVDAR-KGVL-EQTRRHSFIASLLG---IRHVVVAV 146 (431)
T ss_pred ccceEEEecCCcHHHH----------hhhhhc--ccccccEEEEEEecc-hhhH-HHhHHHHHHHHHhC---CcEEEEEE
Confidence 6799999999997331 111110 012368777775442 2221 12233445666667 58999999
Q ss_pred eccCCCC
Q 036930 596 THAASEP 602 (1109)
Q Consensus 596 TKaD~l~ 602 (1109)
||+|+..
T Consensus 147 NKmDLvd 153 (431)
T COG2895 147 NKMDLVD 153 (431)
T ss_pred eeecccc
Confidence 9999975
No 372
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=95.34 E-value=0.006 Score=64.43 Aligned_cols=121 Identities=15% Similarity=0.144 Sum_probs=65.7
Q ss_pred cccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEE--EEEEECCEEEEEEeCCCCCCCCcchhhhHHHH
Q 036930 465 DDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKV--IAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTL 542 (1109)
Q Consensus 465 e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e--~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl 542 (1109)
..+..-++++++|.-+|||||+|...+.- .|.-+.-...-+...+ +...+....+.+|||+|-.+.
T Consensus 15 ~d~e~aiK~vivGng~VGKssmiqryCkg-ifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEf----------- 82 (246)
T KOG4252|consen 15 TDYERAIKFVIVGNGSVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEF----------- 82 (246)
T ss_pred hhhhhhEEEEEECCCccchHHHHHHHhcc-ccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhH-----------
Confidence 44566789999999999999999998831 1111110000011111 122223456678999887432
Q ss_pred HHHHHHHhcCCCcEEEEEecCCC-CCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 543 ASIRKSIKKFPPDVVLYVDRLDT-HTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 543 ~~Ikk~Lk~~gpDVVLLVvrlds-~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+|.+..- .++.+.++|++-+. ..++ .-..+-+.+..-.+ ..|+++|-||+|+++
T Consensus 83 DaItkAyy-rgaqa~vLVFSTTDr~SFe-a~~~w~~kv~~e~~---~IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 83 DAITKAYY-RGAQASVLVFSTTDRYSFE-ATLEWYNKVQKETE---RIPTVFVQNKIDLVE 138 (246)
T ss_pred HHHHHHHh-ccccceEEEEecccHHHHH-HHHHHHHHHHHHhc---cCCeEEeeccchhhH
Confidence 12222111 25677777754432 1211 11222333333333 479999999999875
No 373
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.34 E-value=0.07 Score=59.17 Aligned_cols=65 Identities=23% Similarity=0.354 Sum_probs=43.6
Q ss_pred cCCCcE-EEEEecCCCChhHHHHHHhCC-CcceecC-CCCceeEEEEEEE---EECCEEEEEEeCCCCCCC
Q 036930 467 MDFSLN-ILVLGKTGVGKSATINSIFGE-EKSTINA-FEPATSSVKVIAG---LVHGVKIRIFDTPGLRSP 531 (1109)
Q Consensus 467 L~~gLr-IaLVGkTGVGKSSLINaLLG~-~va~Vs~-i~pgTTrv~e~~~---~i~G~~VtLIDTPGL~ds 531 (1109)
.+.++. |.|+|+..+|||.|+|.|++. ..|.++. ..++|.-+-.... ...+..|.++||.|+.+.
T Consensus 17 ~~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 17 IDQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp TTSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred CCCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 344555 559999999999999999985 3456665 2355543321111 113578999999999883
No 374
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.23 E-value=0.011 Score=62.27 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=36.7
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDT 525 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDT 525 (1109)
+.-|+|+|++|+|||||++.|+.+....... .+.|||.. ..++.+|....+|+.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~-v~~TTR~~-r~gE~~G~dY~fvs~ 57 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFS-ISCTTRAP-RPGDEEGKTYFFLTI 57 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCCccccc-cCccCCCC-CCCCCCCceeEeCCH
Confidence 4568899999999999999999875322223 37788732 234456665555543
No 375
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=95.22 E-value=0.094 Score=60.71 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=22.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
..+-|++|||++.+||||+...|++
T Consensus 101 ~~GPrv~vVGp~d~GKsTl~r~L~n 125 (415)
T KOG2749|consen 101 SYGPRVMVVGPTDVGKSTLCRILLN 125 (415)
T ss_pred ccCCEEEEECCCccchHHHHHHHHH
Confidence 4567999999999999999998874
No 376
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.06 E-value=0.075 Score=62.34 Aligned_cols=28 Identities=18% Similarity=0.199 Sum_probs=23.0
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
......+|+|+|+.++|||||.+.|+++
T Consensus 69 ~~~~~~~vmvvG~vDSGKSTLt~~LaN~ 96 (398)
T COG1341 69 SAGKVGVVMVVGPVDSGKSTLTTYLANK 96 (398)
T ss_pred hccCCcEEEEECCcCcCHHHHHHHHHHH
Confidence 4566789999999999999998666543
No 377
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.05 E-value=0.015 Score=62.04 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=37.5
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTP 526 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTP 526 (1109)
...+..|+|+|++|+|||||++.|..... ......+.||+..+ .++.+|....+++..
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r-~~e~~g~~y~fv~~~ 67 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKR-PGEIDGVDYHFVTPE 67 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCC-CCCCCCCeeeeCCHH
Confidence 34567788999999999999999986532 23233356776422 234556666555443
No 378
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.89 E-value=0.18 Score=50.82 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=25.5
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.+..+-.++|+|++|+|||||++.|+|...
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 345667889999999999999999999753
No 379
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=94.88 E-value=0.017 Score=71.81 Aligned_cols=127 Identities=16% Similarity=0.132 Sum_probs=74.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEE-------------------------------------
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVI------------------------------------- 511 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~------------------------------------- 511 (1109)
.--.|++||..++||||.+++|.|+....-+.- -+|.+....
T Consensus 28 ~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g-ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 28 PLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG-IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred cCCceEEecCCCCcchhHHHHhhcccccccccc-ceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 345899999999999999999999754322220 122221000
Q ss_pred ----------------EEE---ECCEEEEEEeCCCCCCCCc---chhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCC
Q 036930 512 ----------------AGL---VHGVKIRIFDTPGLRSPAI---GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRD 569 (1109)
Q Consensus 512 ----------------~~~---i~G~~VtLIDTPGL~ds~~---~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d 569 (1109)
... .+-..+++||+||+..... .......+...+..++.+ ++.+++.+......+
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~--~~~iILav~~an~d~- 183 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEK--PNRIILAVTPANSDI- 183 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccc--cchhhhhccchhhhh-
Confidence 000 0114578999999977532 223455666666666654 566555533322111
Q ss_pred CCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 570 HNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 570 ~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.....++...+.= .....++-|+||+|..+
T Consensus 184 -ats~alkiarevD--p~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 184 -ATSPALVVAREVD--PGGSRTLEVITKFDFMD 213 (657)
T ss_pred -hcCHHHHHHHhhC--CCccchhHHhhhHHhhh
Confidence 1223455555441 22468999999999875
No 380
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.82 E-value=0.41 Score=50.57 Aligned_cols=118 Identities=21% Similarity=0.448 Sum_probs=61.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhC---CCcceecCCCCceeEEEEEEEEECC--EEEEEEeCC-C---------CCCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFG---EEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTP-G---------LRSPA 532 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG---~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTP-G---------L~ds~ 532 (1109)
+..++|.+.|+|||||||++-.|.. .+.++++-+ -|..+. -+| .-|.++|+. | +....
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf--~t~EVR-----~gGkR~GF~Ivdl~tg~~~~la~~~~~~~r 75 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGF--ITPEVR-----EGGKRIGFKIVDLATGEEGILARVGFSRPR 75 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeE--Eeeeee-----cCCeEeeeEEEEccCCceEEEEEcCCCCcc
Confidence 3468999999999999999988763 233444432 111111 122 224555555 2 21111
Q ss_pred cc------hhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccC
Q 036930 533 IG------RTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAA 599 (1109)
Q Consensus 533 ~~------~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD 599 (1109)
.. ....+-...+++++++. +|++++ .-+..-.+ .-..+.+.+.+.+.. .+|+|.++-+-+
T Consensus 76 vGkY~V~v~~le~i~~~al~rA~~~--aDvIII-DEIGpMEl--ks~~f~~~ve~vl~~--~kpliatlHrrs 141 (179)
T COG1618 76 VGKYGVNVEGLEEIAIPALRRALEE--ADVIII-DEIGPMEL--KSKKFREAVEEVLKS--GKPLIATLHRRS 141 (179)
T ss_pred cceEEeeHHHHHHHhHHHHHHHhhc--CCEEEE-ecccchhh--ccHHHHHHHHHHhcC--CCcEEEEEeccc
Confidence 11 11233444556655543 677654 33332111 123455566666543 378887775543
No 381
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=94.74 E-value=0.17 Score=60.02 Aligned_cols=112 Identities=15% Similarity=0.160 Sum_probs=67.5
Q ss_pred cEEEEEecCCCChhHHHHHHh--CCCc-------c------eecCC--------CCceeEEEEEEEEECCEEEEEEeCCC
Q 036930 471 LNILVLGKTGVGKSATINSIF--GEEK-------S------TINAF--------EPATSSVKVIAGLVHGVKIRIFDTPG 527 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLL--G~~v-------a------~Vs~i--------~pgTTrv~e~~~~i~G~~VtLIDTPG 527 (1109)
-+.++|-.|-+|||||--.|+ |... + ..+++ -+.|+. .....+++..|.|+||||
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsS--VMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSS--VMQFDYADCLVNLLDTPG 90 (528)
T ss_pred cceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEee--EEEeccCCeEEeccCCCC
Confidence 378999999999999998875 2111 1 11111 122333 234567899999999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 528 LRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 528 L~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..|-.- ...+.+.. +|..+.|++.. ..+.+..+++++.. ++- ..|++-.+||.|...
T Consensus 91 HeDFSE------DTYRtLtA------vDsAvMVIDaA-KGiE~qT~KLfeVc-rlR----~iPI~TFiNKlDR~~ 147 (528)
T COG4108 91 HEDFSE------DTYRTLTA------VDSAVMVIDAA-KGIEPQTLKLFEVC-RLR----DIPIFTFINKLDREG 147 (528)
T ss_pred ccccch------hHHHHHHh------hheeeEEEecc-cCccHHHHHHHHHH-hhc----CCceEEEeecccccc
Confidence 987542 22222221 68888885543 34433333444322 222 368899999999743
No 382
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.73 E-value=0.025 Score=55.17 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EcCCCEEEEEccCCCccccceeeeccccc
Confidence 44566899999999999999999999764
No 383
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.70 E-value=0.025 Score=59.26 Aligned_cols=54 Identities=24% Similarity=0.363 Sum_probs=34.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEe
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFD 524 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLID 524 (1109)
.+..|+|+|++|+|||||++.|++... ......+.||+.. ..++++|..+.+++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p-~~ge~~g~~~~~~~ 57 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAP-RPGEVDGVDYFFVS 57 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCC-CCCCcCCCeeEEcC
Confidence 466799999999999999999998753 1111124455521 12335566555554
No 384
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=0.048 Score=57.70 Aligned_cols=118 Identities=13% Similarity=0.167 Sum_probs=67.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCC--CCceeE--EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAF--EPATSS--VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i--~pgTTr--v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...|+|+|.-|+||+||+-++-....-..+.. .-.|+. .......+++.++.+||.-|- +.++.+
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQ-----------e~lrSl 85 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQ-----------ESLRSL 85 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCCh-----------HHHHHH
Confidence 46899999999999999977643322111111 112222 445566677889999998664 223333
Q ss_pred HH-HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 546 RK-SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 546 kk-~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+ +-. .+|+++||++......-+.....++.+...= ....-|++++.||-|..
T Consensus 86 w~~yY~--~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E-~leg~p~L~lankqd~q 139 (197)
T KOG0076|consen 86 WKKYYW--LAHGIIYVIDATDRERFEESKTAFEKVVENE-KLEGAPVLVLANKQDLQ 139 (197)
T ss_pred HHHHHH--HhceeEEeecCCCHHHHHHHHHHHHHHHHHH-HhcCCchhhhcchhhhh
Confidence 32 111 2799999977665222112223333332210 01136888999999863
No 385
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=94.49 E-value=0.13 Score=57.10 Aligned_cols=96 Identities=21% Similarity=0.329 Sum_probs=53.0
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
.-+++|-|..|+||||++.+|+.+.. . . |.+++=|+.-+|.+ -..++ ..+
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~----~--~-------------GLRlIev~k~~L~~-------l~~l~----~~l 101 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYA----D--Q-------------GLRLIEVSKEDLGD-------LPELL----DLL 101 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHh----h--c-------------CceEEEECHHHhcc-------HHHHH----HHH
Confidence 46899999999999999999997542 1 1 11112122212211 11233 333
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEe
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLT 596 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLT 596 (1109)
+..+.-.||||.+++ +.........|+.+.+---.....|++|..|
T Consensus 102 ~~~~~kFIlf~DDLs-Fe~~d~~yk~LKs~LeGgle~~P~NvliyAT 147 (249)
T PF05673_consen 102 RDRPYKFILFCDDLS-FEEGDTEYKALKSVLEGGLEARPDNVLIYAT 147 (249)
T ss_pred hcCCCCEEEEecCCC-CCCCcHHHHHHHHHhcCccccCCCcEEEEEe
Confidence 333467788886654 3333334566666665422233467776655
No 386
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=94.39 E-value=0.022 Score=67.64 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=53.6
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCc------eeEEEEEEEEECC--EEEEEE-----eCCCCCCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPA------TSSVKVIAGLVHG--VKIRIF-----DTPGLRSPAI 533 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pg------TTrv~e~~~~i~G--~~VtLI-----DTPGL~ds~~ 533 (1109)
+..+-+++|+|++|+|||||+|.|++.....+..+... ++.... ..+.+ .+-++| |+||.+....
T Consensus 154 i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~--~~l~~~l~~tvvV~atsddsp~~R~~~~ 231 (434)
T PRK08472 154 CGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIE--KNLGGDLENTVIVVATSDDSPLMRKYGA 231 (434)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHH--HHhcCcccceEEEEECCCCCHHHhhHHH
Confidence 44567899999999999999999997543222221000 111000 11122 244567 8888765331
Q ss_pred chhhhHHHHHHHHHHHhcCCCcEEEEEecCCC
Q 036930 534 GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDT 565 (1109)
Q Consensus 534 ~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds 565 (1109)
..--.+.+++...+-|++|++.++++
T Consensus 232 ------~~a~~iAEyFrd~G~~Vll~~DslTr 257 (434)
T PRK08472 232 ------FCAMSVAEYFKNQGLDVLFIMDSVTR 257 (434)
T ss_pred ------HHHHHHHHHHHHcCCCEEEecccchH
Confidence 11234555665668899999976664
No 387
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.37 E-value=0.26 Score=50.64 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=60.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCce------eEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT------SSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLA 543 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT------Trv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~ 543 (1109)
-++.+++|.-|||||-|+.-.+..+- - .+ .|.| ||+++..+ ..+++.+|||+|-.. .+
T Consensus 11 ifkyiiigdmgvgkscllhqftekkf-m-ad-cphtigvefgtriievsg--qkiklqiwdtagqer-----------fr 74 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKF-M-AD-CPHTIGVEFGTRIIEVSG--QKIKLQIWDTAGQER-----------FR 74 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHH-h-hc-CCcccceecceeEEEecC--cEEEEEEeecccHHH-----------HH
Confidence 46889999999999999988775432 1 11 1333 33333222 236788999998622 22
Q ss_pred HHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC-CCCCeEEEEEeccCCC
Q 036930 544 SIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS-SVWQNAILCLTHAASE 601 (1109)
Q Consensus 544 ~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~-~v~k~vIVVLTKaD~l 601 (1109)
.+.+..- .++...|.|.++++..- --.+-.++...-.- +...-++++-||+|+-
T Consensus 75 avtrsyy-rgaagalmvyditrrst---ynhlsswl~dar~ltnpnt~i~lignkadle 129 (215)
T KOG0097|consen 75 AVTRSYY-RGAAGALMVYDITRRST---YNHLSSWLTDARNLTNPNTVIFLIGNKADLE 129 (215)
T ss_pred HHHHHHh-ccccceeEEEEehhhhh---hhhHHHHHhhhhccCCCceEEEEecchhhhh
Confidence 2222111 15666777866765321 11223344433211 1123345567899874
No 388
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=94.34 E-value=0.32 Score=55.42 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=69.4
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCc----ce------ecCC-----CCceeEEEEEEEEECCEEEEEEeCCCCCC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEK----ST------INAF-----EPATSSVKVIAGLVHGVKIRIFDTPGLRS 530 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~v----a~------Vs~i-----~pgTTrv~e~~~~i~G~~VtLIDTPGL~d 530 (1109)
.-.+.++|..||.-+-|||||..+|+..-. +. +... ...|-......++...+++..||.||..|
T Consensus 8 r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHH
Confidence 345678999999999999999999864211 10 1111 11232233445556789999999999865
Q ss_pred CCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 531 s~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
- +...|.-.. +.|..++|+..+.-...+ .+.-+ .+....| ..++++++||+|...
T Consensus 88 Y---------vKNMItgAa---qmDgAILVVsA~dGpmPq-TrEHi-LlarqvG---vp~ivvflnK~Dmvd 142 (394)
T COG0050 88 Y---------VKNMITGAA---QMDGAILVVAATDGPMPQ-TREHI-LLARQVG---VPYIVVFLNKVDMVD 142 (394)
T ss_pred H---------HHHHhhhHH---hcCccEEEEEcCCCCCCc-chhhh-hhhhhcC---CcEEEEEEecccccC
Confidence 1 111222111 357767776665422211 11111 1222333 367888999999875
No 389
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.29 E-value=0.033 Score=61.68 Aligned_cols=30 Identities=33% Similarity=0.485 Sum_probs=25.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKS 496 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va 496 (1109)
+..+=-|+|+|++|||||||+|.|+|-...
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 345556899999999999999999997653
No 390
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.25 E-value=0.036 Score=52.87 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEEecCCCChhHHHHHHhCC
Q 036930 472 NILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.|+|.|+||+||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 391
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=0.032 Score=58.17 Aligned_cols=116 Identities=21% Similarity=0.236 Sum_probs=56.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCC-----CcceecCCCCceeE-EEEEEE-----EECCEEEEEEeCCCCCCCCcchhhhH
Q 036930 471 LNILVLGKTGVGKSATINSIFGE-----EKSTINAFEPATSS-VKVIAG-----LVHGVKIRIFDTPGLRSPAIGRTVNK 539 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~-----~va~Vs~i~pgTTr-v~e~~~-----~i~G~~VtLIDTPGL~ds~~~~~~~e 539 (1109)
++.+.+|.+||||+|++-..+.- ....|+-- --..+ +....+ .-..+.+.+|||+|-..
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGID-FreKrvvY~s~gp~g~gr~~rihLQlWDTAGQER--------- 79 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGID-FREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQER--------- 79 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecc-cccceEEEeccCCCCCCcceEEEEeeeccccHHH---------
Confidence 56778899999999988554432 11112110 00111 111111 00116688999999632
Q ss_pred HHHHHHH-HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 540 KTLASIR-KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 540 eIl~~Ik-k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+.+. .+.+. +-.+|++.+++....-.+-+.++..++.+ .-.....+|++-||+|+.
T Consensus 80 --FRSLTTAFfRD--AMGFlLiFDlT~eqSFLnvrnWlSQL~~h-AYcE~PDivlcGNK~DL~ 137 (219)
T KOG0081|consen 80 --FRSLTTAFFRD--AMGFLLIFDLTSEQSFLNVRNWLSQLQTH-AYCENPDIVLCGNKADLE 137 (219)
T ss_pred --HHHHHHHHHHh--hccceEEEeccchHHHHHHHHHHHHHHHh-hccCCCCEEEEcCccchh
Confidence 11111 12221 45677887776532111122333333322 111135677888999974
No 392
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.22 E-value=0.032 Score=58.37 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+.+..|+|+|++|+|||||+++|++.-
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345789999999999999999999853
No 393
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.038 Score=58.32 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=24.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+ .++|+|++|+|||||++.|+|...
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567 899999999999999999999643
No 394
>PTZ00099 rab6; Provisional
Probab=94.00 E-value=0.22 Score=51.93 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=43.5
Q ss_pred EEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCC-CCCCCcHHHHHHHHhhhCCCCCC
Q 036930 513 GLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTH-TRDHNDLPLLKSLTSSLGSSVWQ 589 (1109)
Q Consensus 513 ~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~-t~d~eD~~lLk~I~e~FG~~v~k 589 (1109)
..+++ .++.||||||..... . ....+++ ++|++|+|.+++.. ++.. -...+..+....+ ...
T Consensus 22 ~~~~~~~v~l~iwDt~G~e~~~-------~---~~~~~~~--~ad~~ilv~D~t~~~sf~~-~~~w~~~i~~~~~--~~~ 86 (176)
T PTZ00099 22 LYLDEGPVRLQLWDTAGQERFR-------S---LIPSYIR--DSAAAIVVYDITNRQSFEN-TTKWIQDILNERG--KDV 86 (176)
T ss_pred EEECCEEEEEEEEECCChHHhh-------h---ccHHHhC--CCcEEEEEEECCCHHHHHH-HHHHHHHHHHhcC--CCC
Confidence 34444 678899999984321 1 1122333 58999999887753 2221 1223333433322 236
Q ss_pred eEEEEEeccCCC
Q 036930 590 NAILCLTHAASE 601 (1109)
Q Consensus 590 ~vIVVLTKaD~l 601 (1109)
++|+|.||+|+.
T Consensus 87 piilVgNK~DL~ 98 (176)
T PTZ00099 87 IIALVGNKTDLG 98 (176)
T ss_pred eEEEEEECcccc
Confidence 789999999974
No 395
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.95 E-value=0.041 Score=58.99 Aligned_cols=27 Identities=37% Similarity=0.480 Sum_probs=23.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
..+-+++|+|++|+|||||+|.|+|-.
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 345578999999999999999999854
No 396
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.84 E-value=0.46 Score=42.31 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=41.1
Q ss_pred EEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcC
Q 036930 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKF 552 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~ 552 (1109)
|++.|+.|+||||+.+.|+..-.. .+. ++.. ++ .++++|+|+....... . ....+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~------~g~-~v~~----~~--d~iivD~~~~~~~~~~------~---~~~~~~-- 57 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK------RGK-RVLL----ID--DYVLIDTPPGLGLLVL------L---CLLALL-- 57 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH------CCC-eEEE----EC--CEEEEeCCCCccchhh------h---hhhhhh--
Confidence 678899999999999988753211 111 1100 11 7899999988664310 0 011111
Q ss_pred CCcEEEEEecCCCC
Q 036930 553 PPDVVLYVDRLDTH 566 (1109)
Q Consensus 553 gpDVVLLVvrlds~ 566 (1109)
.+|.+++++..+..
T Consensus 58 ~~~~vi~v~~~~~~ 71 (99)
T cd01983 58 AADLVIIVTTPEAL 71 (99)
T ss_pred hCCEEEEecCCchh
Confidence 36888888655543
No 397
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=93.78 E-value=0.22 Score=57.99 Aligned_cols=160 Identities=13% Similarity=0.129 Sum_probs=86.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC------CcceecC------CCCceeEEE--EEE--------EEE------------
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE------EKSTINA------FEPATSSVK--VIA--------GLV------------ 515 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~------~va~Vs~------i~pgTTrv~--e~~--------~~i------------ 515 (1109)
.+|++++|--.+|||||+--|+.- -++..+- +.++.|.+. +.. ..+
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 589999999999999999888632 2222211 223333321 110 001
Q ss_pred CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEE
Q 036930 516 HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCL 595 (1109)
Q Consensus 516 ~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVL 595 (1109)
..+-|++||.+|-..-.. . .+ .-+.-+-||..++|++.++- ......+-|..+..+ ..|+.|++
T Consensus 247 SSKlvTfiDLAGh~kY~~------T---Ti-~gLtgY~Ph~A~LvVsA~~G-i~~tTrEHLgl~~AL-----~iPfFvlv 310 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQK------T---TI-HGLTGYTPHFACLVVSADRG-ITWTTREHLGLIAAL-----NIPFFVLV 310 (591)
T ss_pred hcceEEEeecccchhhhe------e---ee-eecccCCCceEEEEEEcCCC-CccccHHHHHHHHHh-----CCCeEEEE
Confidence 114588999998754210 0 01 11233458999999887742 111123334444333 47899999
Q ss_pred eccCCCCCCCCCCCCccHHHHHhhcHHHHHHHHHHHhCCCceeccCCCCHHHHHhhHHHHHh
Q 036930 596 THAASEPPDGPSGLPLSYEVFVGQQSHAIQQRISQAIGDPHLMNLNMMHPVSLVENHQSCQK 657 (1109)
Q Consensus 596 TKaD~l~pd~~~~~p~sieefV~q~~~~LQelI~qc~gr~~lfn~s~r~pv~LvEn~~l~~k 657 (1109)
||.|+..+. .++..+ +.|..++.+.+.+-.-+.... ...++..+..+|.-
T Consensus 311 tK~Dl~~~~-------~~~~tv----~~l~nll~~~Gc~kvp~~Vt~-~ddAv~Aaq~~~s~ 360 (591)
T KOG1143|consen 311 TKMDLVDRQ-------GLKKTV----KDLSNLLAKAGCTKVPKRVTT-KDDAVKAAQELCSG 360 (591)
T ss_pred Eeeccccch-------hHHHHH----HHHHHHHhhcCccccceEeec-hHHHHHHHHHhccC
Confidence 999987643 333333 346666666554433222111 23455555556653
No 398
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=93.73 E-value=0.055 Score=50.25 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+-.++|+|++|+||||++..|+..-
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3578999999999999999998754
No 399
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.71 E-value=0.051 Score=57.28 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44566789999999999999999999653
No 400
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.56 E-value=0.055 Score=58.10 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666899999999999999999999653
No 401
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.49 E-value=0.058 Score=57.13 Aligned_cols=29 Identities=31% Similarity=0.544 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667899999999999999999999643
No 402
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.45 E-value=0.056 Score=56.85 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=25.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 45677899999999999999999999653
No 403
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=93.40 E-value=0.059 Score=56.64 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.6
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+..+-+++|+|++|+|||||+|.|++
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 356677899999999999999999974
No 404
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.37 E-value=0.063 Score=57.11 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45566789999999999999999999643
No 405
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=93.37 E-value=0.043 Score=57.21 Aligned_cols=53 Identities=23% Similarity=0.350 Sum_probs=35.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEe
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFD 524 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLID 524 (1109)
.-|+|+|++|+||+|+++.|+...........+.|||..+ .++.+|....+++
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r-~~e~~g~dy~fvs 55 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPR-PGEVNGVDYHFVS 55 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCC-CCCcCCceEEECC
Confidence 3588999999999999999998753223333467777432 3445565555544
No 406
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.36 E-value=0.059 Score=62.31 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=-++|+||+|||||||++.|+|-..
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44555689999999999999999999765
No 407
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.36 E-value=0.063 Score=56.67 Aligned_cols=29 Identities=17% Similarity=0.424 Sum_probs=25.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666899999999999999999999753
No 408
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.34 E-value=0.064 Score=56.80 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 45566889999999999999999999753
No 409
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.27 E-value=0.066 Score=56.37 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45667899999999999999999999653
No 410
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.22 E-value=0.065 Score=57.18 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|+|..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4566689999999999999999999975
No 411
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.16 E-value=0.072 Score=55.40 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45566789999999999999999999653
No 412
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.15 E-value=0.069 Score=56.61 Aligned_cols=29 Identities=24% Similarity=0.434 Sum_probs=25.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666899999999999999999999753
No 413
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.10 E-value=0.069 Score=56.81 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45566789999999999999999999753
No 414
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=93.10 E-value=0.63 Score=46.59 Aligned_cols=98 Identities=21% Similarity=0.183 Sum_probs=53.9
Q ss_pred EEecCCCChhHHHHHHhCC------CcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 475 VLGKTGVGKSATINSIFGE------EKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 475 LVGkTGVGKSSLINaLLG~------~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
.-|+.|+|||++--.|... ....+..- ++.... ...++|||||+.... .....
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D-~~~~~~--------~yd~VIiD~p~~~~~--------~~~~~---- 63 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDAD-LGLANL--------DYDYIIIDTGAGISD--------NVLDF---- 63 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECC-CCCCCC--------CCCEEEEECCCCCCH--------HHHHH----
Confidence 5578999999987666432 22222211 111110 167899999975431 11122
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAA 599 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD 599 (1109)
+.. +|.+++++..+...... -..+++.+.... ...++.+|+|+++
T Consensus 64 l~~--aD~vviv~~~~~~s~~~-~~~~l~~l~~~~---~~~~~~lVvN~~~ 108 (139)
T cd02038 64 FLA--ADEVIVVTTPEPTSITD-AYALIKKLAKQL---RVLNFRVVVNRAE 108 (139)
T ss_pred HHh--CCeEEEEcCCChhHHHH-HHHHHHHHHHhc---CCCCEEEEEeCCC
Confidence 222 69999996665433211 134455554432 2356778999986
No 415
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.07 E-value=0.074 Score=56.44 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666899999999999999999999754
No 416
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=93.07 E-value=0.074 Score=56.07 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45566789999999999999999999643
No 417
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=93.06 E-value=0.074 Score=57.27 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45666899999999999999999999653
No 418
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.05 E-value=0.075 Score=56.95 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=25.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667899999999999999999999754
No 419
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.04 E-value=0.073 Score=55.76 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+=.++|+|++|+|||||++.|+|..
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456678999999999999999999964
No 420
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.03 E-value=0.073 Score=55.53 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
-.|+|+|++|+|||||++.|++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999998764
No 421
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.01 E-value=0.077 Score=55.97 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=25.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666789999999999999999999643
No 422
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.01 E-value=0.075 Score=58.34 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=24.6
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=-|+|+||+|+|||||+|.|.+-+.
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 44555789999999999999999998765
No 423
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=92.99 E-value=0.079 Score=55.82 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44566789999999999999999999653
No 424
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.97 E-value=0.079 Score=56.02 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45566789999999999999999999643
No 425
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=92.96 E-value=0.077 Score=57.01 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+-.++|+|++|+|||||++.|+|.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456668999999999999999999997
No 426
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=92.94 E-value=0.077 Score=56.07 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 45666899999999999999999999753
No 427
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.94 E-value=0.08 Score=55.47 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=25.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45667899999999999999999999754
No 428
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.93 E-value=0.079 Score=56.87 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=24.6
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|+|..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4566689999999999999999999964
No 429
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=92.93 E-value=0.08 Score=56.15 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45566799999999999999999999753
No 430
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.89 E-value=0.083 Score=54.14 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=25.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55667899999999999999999999753
No 431
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.88 E-value=0.093 Score=59.36 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=29.6
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDT 525 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDT 525 (1109)
.--+|+|++|+||||+||.|.|-.. ..+....++|+ +++|+
T Consensus 25 GvTAlFG~SGsGKTslin~IaGL~r------------PdeG~I~lngr--~L~Ds 65 (352)
T COG4148 25 GITALFGPSGSGKTSLINMIAGLTR------------PDEGRIELNGR--VLVDA 65 (352)
T ss_pred ceEEEecCCCCChhhHHHHHhccCC------------ccccEEEECCE--Eeecc
Confidence 4567999999999999999998543 23444556665 45665
No 432
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.87 E-value=0.64 Score=50.82 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=25.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC-CCcceecCCCCc
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG-EEKSTINAFEPA 504 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG-~~va~Vs~i~pg 504 (1109)
.+-.++|+|+.+.||||++..|.+ .-.+..+.+.|+
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 344678999999999999999987 333334443333
No 433
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=92.83 E-value=0.083 Score=56.46 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45566799999999999999999999653
No 434
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=92.82 E-value=0.095 Score=55.71 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=25.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666899999999999999999999753
No 435
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=92.80 E-value=0.083 Score=58.01 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=25.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 55677899999999999999999999753
No 436
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=92.78 E-value=0.081 Score=51.73 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.1
Q ss_pred EEEEecCCCChhHHHHHHhCC
Q 036930 473 ILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~ 493 (1109)
|+++|+||+||||++..|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999854
No 437
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=92.72 E-value=0.087 Score=57.03 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45666789999999999999999999753
No 438
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.72 E-value=0.55 Score=52.20 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=25.3
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
.+..+-|++|+|++|+|||||++.|.+.-
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 35677899999999999999999999754
No 439
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=92.71 E-value=0.082 Score=57.42 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+=.++|+|++|+|||||++.|+|.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 456667899999999999999999985
No 440
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=92.68 E-value=0.088 Score=56.58 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+=.++|+|++|+|||||++.|+|..
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556678999999999999999999964
No 441
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.67 E-value=0.091 Score=56.08 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 44566789999999999999999999754
No 442
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=92.67 E-value=0.092 Score=55.41 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666789999999999999999999753
No 443
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=92.66 E-value=0.092 Score=55.62 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45666899999999999999999999643
No 444
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=92.64 E-value=0.091 Score=56.20 Aligned_cols=29 Identities=24% Similarity=0.421 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 45566889999999999999999999643
No 445
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=92.62 E-value=0.093 Score=55.26 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45566789999999999999999999653
No 446
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=92.61 E-value=0.091 Score=56.34 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=24.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|+|..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4556678999999999999999999964
No 447
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.59 E-value=0.091 Score=57.00 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=24.5
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+=.++|+|++|+|||||++.|+|..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4556688999999999999999999964
No 448
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=92.56 E-value=0.15 Score=55.18 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=24.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
...+..|+|.|++|+|||||++.|++.-.
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34568899999999999999999987543
No 449
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=92.54 E-value=0.095 Score=56.53 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=25.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667899999999999999999999753
No 450
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=92.51 E-value=0.1 Score=54.80 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=25.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666899999999999999999999653
No 451
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.50 E-value=0.1 Score=54.96 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55677899999999999999999999753
No 452
>PRK10908 cell division protein FtsE; Provisional
Probab=92.47 E-value=0.1 Score=55.65 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667889999999999999999999753
No 453
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=92.47 E-value=0.099 Score=55.85 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45666889999999999999999999753
No 454
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.45 E-value=0.1 Score=53.92 Aligned_cols=29 Identities=31% Similarity=0.499 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45566889999999999999999999753
No 455
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=0.44 Score=59.53 Aligned_cols=46 Identities=22% Similarity=0.203 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHhhhcc--cccCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 446 AVSIEAAKRVAEQHEIEDK--DDMDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 446 ~~~le~a~~~a~qlla~~~--e~L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.|.++...+.+.+.++-+. ..+ .+--++|+||||||||||.++|+.
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~-kGpILcLVGPPGVGKTSLgkSIA~ 372 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKL-KGPILCLVGPPGVGKTSLGKSIAK 372 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccC-CCcEEEEECCCCCCchhHHHHHHH
Confidence 3445566666666666321 112 234467999999999999999963
No 456
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.42 E-value=0.084 Score=61.17 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
...+|+|.|+||+|||||+|+|++.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc
Confidence 4579999999999999999999975
No 457
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=92.40 E-value=0.11 Score=53.99 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+=.++|+|++|+|||||++.|+|..
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566789999999999999999999964
No 458
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=92.40 E-value=0.1 Score=54.98 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=25.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667899999999999999999999753
No 459
>PLN03130 ABC transporter C family member; Provisional
Probab=92.39 E-value=0.54 Score=64.40 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=22.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
.+=+|+|||+||+|||||++.|++-.
T Consensus 1264 ~GekVaIVGrSGSGKSTLl~lL~rl~ 1289 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSSMLNALFRIV 1289 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 44589999999999999999999853
No 460
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.39 E-value=0.1 Score=55.20 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=25.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666889999999999999999999754
No 461
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=92.39 E-value=0.1 Score=56.09 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44566789999999999999999999754
No 462
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=92.38 E-value=0.12 Score=55.94 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666899999999999999999999753
No 463
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.37 E-value=0.1 Score=56.26 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44566789999999999999999999753
No 464
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.36 E-value=0.1 Score=54.94 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=25.5
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.+..+-.++|+|++|+|||||++.|+|...
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 345667899999999999999999999753
No 465
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.36 E-value=0.12 Score=53.69 Aligned_cols=29 Identities=17% Similarity=0.303 Sum_probs=25.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666899999999999999999999754
No 466
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.32 E-value=0.095 Score=63.00 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
++.+=+|+++|++|+|||||+|.|+|-..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34666899999999999999999998643
No 467
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.31 E-value=0.1 Score=56.59 Aligned_cols=28 Identities=18% Similarity=0.300 Sum_probs=24.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+=.++|+|++|+|||||++.|+|..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4566689999999999999999999953
No 468
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=92.30 E-value=0.1 Score=57.07 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|+|..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4566789999999999999999999964
No 469
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.30 E-value=0.11 Score=55.33 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=25.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 55667899999999999999999999754
No 470
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.30 E-value=0.046 Score=56.81 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=25.8
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEE
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSV 508 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv 508 (1109)
-|+|+||+|+||+|+.+.|+....-......+.|||.
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~ 40 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRP 40 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-
T ss_pred EEEEECCCCCCHHHHHHHHHHhcccccccceeecccC
Confidence 4789999999999999999875432222222567763
No 471
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=92.30 E-value=0.11 Score=55.85 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=25.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45667899999999999999999999753
No 472
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.29 E-value=0.11 Score=55.64 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=25.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667899999999999999999999753
No 473
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=92.28 E-value=0.1 Score=57.13 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=24.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|+|..
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4566789999999999999999999964
No 474
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.27 E-value=0.11 Score=56.48 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=24.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+=.++|+|++|+|||||++.|+|..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4456679999999999999999999853
No 475
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=92.26 E-value=0.11 Score=57.60 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666899999999999999999999743
No 476
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.24 E-value=0.097 Score=53.74 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHhCC
Q 036930 472 NILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.|+|+|++|+||||+++.|++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 477
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.24 E-value=0.11 Score=56.53 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=24.5
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+=.++|+|++|+|||||++.|+|..
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4566678999999999999999999964
No 478
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.20 E-value=0.11 Score=55.31 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=25.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667899999999999999999999643
No 479
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=92.20 E-value=0.54 Score=56.48 Aligned_cols=113 Identities=14% Similarity=0.101 Sum_probs=61.8
Q ss_pred EEEEEecCCCChhHHHHHHhCCCccee--------------cCCCCceeEEEEEEEE---EC--CEEEEEEeCCCCCCCC
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTI--------------NAFEPATSSVKVIAGL---VH--GVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~V--------------s~i~pgTTrv~e~~~~---i~--G~~VtLIDTPGL~ds~ 532 (1109)
+..+|-.---|||||...|+....... ..-...|-+.+..... -+ ...+.+|||||.-|..
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 466777788999999999875432110 0111234442222222 22 3678899999998854
Q ss_pred cchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 533 IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 533 ~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
. ++.+.+..| ...|+|++.+. .. +.+.+....-.+.. .--+|.|+||+|+..
T Consensus 91 Y------EVSRSLAAC------EGalLvVDAsQ-Gv---eAQTlAN~YlAle~--~LeIiPViNKIDLP~ 142 (603)
T COG0481 91 Y------EVSRSLAAC------EGALLVVDASQ-GV---EAQTLANVYLALEN--NLEIIPVLNKIDLPA 142 (603)
T ss_pred E------EehhhHhhC------CCcEEEEECcc-ch---HHHHHHHHHHHHHc--CcEEEEeeecccCCC
Confidence 3 233344332 33456644443 33 33333332222221 356889999999854
No 480
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=92.19 E-value=0.11 Score=56.33 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=23.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+=.++|+|++|+|||||++.|+|.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 445667999999999999999999985
No 481
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.19 E-value=0.39 Score=50.76 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=22.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..+=+++|+|+.|+|||||++.|.+
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHH
Confidence 34455899999999999999999984
No 482
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.19 E-value=0.12 Score=53.50 Aligned_cols=29 Identities=31% Similarity=0.542 Sum_probs=25.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 45666899999999999999999999754
No 483
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=92.19 E-value=0.11 Score=57.23 Aligned_cols=29 Identities=17% Similarity=0.223 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 45667899999999999999999999643
No 484
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.18 E-value=0.11 Score=54.72 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666899999999999999999999754
No 485
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.17 E-value=0.11 Score=46.34 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.0
Q ss_pred EEEEEecCCCChhHHHHHHh
Q 036930 472 NILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLL 491 (1109)
..+|.|++|+||||++.+|.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999998874
No 486
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.16 E-value=0.11 Score=55.00 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=25.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 45667899999999999999999999753
No 487
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.16 E-value=0.11 Score=56.05 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=25.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45666789999999999999999999753
No 488
>PRK07261 topology modulation protein; Provisional
Probab=92.14 E-value=0.1 Score=54.10 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+|+|+|++|+|||||...|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 489
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=92.14 E-value=1.4 Score=47.71 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHhC
Q 036930 471 LNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG 492 (1109)
++|-|.|++|+|||+||-.++.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHH
Confidence 7888999999999999988764
No 490
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=92.13 E-value=0.13 Score=55.46 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=25.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45667889999999999999999999753
No 491
>PLN02772 guanylate kinase
Probab=92.12 E-value=0.093 Score=61.80 Aligned_cols=53 Identities=23% Similarity=0.241 Sum_probs=35.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEe
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFD 524 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLID 524 (1109)
--|+|+||+||||+||++.|+...........+.|||..+ .++.+|....|++
T Consensus 136 k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR-~gE~dG~dY~Fvs 188 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-EMEKDGVHYHFTE 188 (398)
T ss_pred cEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCc-ccccCCceEeeCC
Confidence 3578999999999999999987653333322367888332 2355666665553
No 492
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.09 E-value=0.11 Score=57.28 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 45566899999999999999999999653
No 493
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.08 E-value=0.12 Score=56.07 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|+|..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4456679999999999999999999964
No 494
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.08 E-value=0.097 Score=55.52 Aligned_cols=26 Identities=23% Similarity=0.371 Sum_probs=22.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+..|+|+|++|+|||||++.|++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34577889999999999999999875
No 495
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=92.07 E-value=0.12 Score=49.18 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.3
Q ss_pred EEEEecCCCChhHHHHHHhCC
Q 036930 473 ILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~ 493 (1109)
|+|.|.|||||||+++.|..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 496
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.06 E-value=0.12 Score=56.39 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 30 ILKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 45666889999999999999999999643
No 497
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=92.05 E-value=0.12 Score=56.23 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45666889999999999999999999754
No 498
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.05 E-value=0.12 Score=57.23 Aligned_cols=29 Identities=21% Similarity=0.261 Sum_probs=25.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 55667899999999999999999999753
No 499
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=92.05 E-value=0.11 Score=56.30 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=25.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 45666789999999999999999999743
No 500
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.04 E-value=0.11 Score=57.90 Aligned_cols=29 Identities=31% Similarity=0.280 Sum_probs=25.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|...
T Consensus 34 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 34 FKKNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45666899999999999999999999753
Done!