Query 036930
Match_columns 1109
No_of_seqs 490 out of 3288
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 11:10:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036930.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036930hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3def_A T7I23.11 protein; chlor 99.9 2.3E-22 7.7E-27 214.3 12.3 201 469-677 35-235 (262)
2 3gee_A MNME, tRNA modification 99.8 2.8E-21 9.5E-26 224.6 13.1 287 388-699 156-466 (476)
3 1h65_A Chloroplast outer envel 99.8 1.8E-20 6.3E-25 200.2 13.7 199 468-675 37-235 (270)
4 3lxx_A GTPase IMAP family memb 99.8 5.5E-20 1.9E-24 192.0 12.3 201 468-692 27-232 (239)
5 3geh_A MNME, tRNA modification 99.8 9.3E-21 3.2E-25 219.5 3.6 285 388-699 148-452 (462)
6 3lxw_A GTPase IMAP family memb 99.8 7.8E-19 2.7E-23 186.3 14.0 199 468-691 19-225 (247)
7 1xzp_A Probable tRNA modificat 99.8 1E-18 3.4E-23 203.6 10.6 278 388-699 168-472 (482)
8 2xtp_A GTPase IMAP family memb 99.6 8.7E-15 3E-19 154.4 15.8 158 468-638 20-182 (260)
9 4dhe_A Probable GTP-binding pr 99.5 7.2E-14 2.5E-18 142.2 13.9 127 469-602 28-158 (223)
10 3iev_A GTP-binding protein ERA 99.5 5.1E-13 1.7E-17 146.4 19.0 125 468-601 8-135 (308)
11 1wf3_A GTP-binding protein; GT 99.5 2E-12 6.8E-17 141.8 21.8 124 470-602 7-131 (301)
12 3t5d_A Septin-7; GTP-binding p 99.5 5.8E-13 2E-17 142.8 16.3 128 469-602 7-158 (274)
13 2gj8_A MNME, tRNA modification 99.4 1.7E-12 5.7E-17 128.8 15.0 125 469-601 3-128 (172)
14 1svi_A GTP-binding protein YSX 99.4 4.2E-12 1.4E-16 126.0 15.7 124 469-602 22-148 (195)
15 3pqc_A Probable GTP-binding pr 99.4 5.8E-12 2E-16 124.2 16.4 125 469-602 22-147 (195)
16 1mky_A Probable GTP-binding pr 99.4 1.9E-12 6.5E-17 148.2 13.2 119 472-600 3-122 (439)
17 2qu8_A Putative nucleolar GTP- 99.3 2.9E-11 9.9E-16 124.9 19.5 127 468-602 27-156 (228)
18 1jwy_B Dynamin A GTPase domain 99.3 1.3E-11 4.3E-16 133.3 16.1 127 469-603 23-213 (315)
19 2dyk_A GTP-binding protein; GT 99.3 6.7E-12 2.3E-16 120.0 12.4 120 471-602 2-122 (161)
20 4dcu_A GTP-binding protein ENG 99.3 9.9E-12 3.4E-16 142.9 15.5 145 448-602 171-320 (456)
21 3i8s_A Ferrous iron transport 99.3 4.9E-12 1.7E-16 136.3 11.8 120 470-602 3-126 (274)
22 2hjg_A GTP-binding protein ENG 99.3 5.2E-12 1.8E-16 144.4 12.6 145 448-602 151-300 (436)
23 3iby_A Ferrous iron transport 99.3 8E-12 2.7E-16 133.8 11.7 119 471-602 2-124 (256)
24 2qtf_A Protein HFLX, GTP-bindi 99.3 2.5E-11 8.5E-16 136.8 15.8 145 450-602 154-306 (364)
25 4a9a_A Ribosome-interacting GT 99.3 1.7E-11 5.7E-16 139.2 13.7 120 471-601 73-195 (376)
26 2hjg_A GTP-binding protein ENG 99.3 3E-12 1E-16 146.5 7.2 121 471-602 4-125 (436)
27 4dcu_A GTP-binding protein ENG 99.3 3.2E-12 1.1E-16 147.0 6.8 122 470-602 23-145 (456)
28 2g6b_A RAS-related protein RAB 99.3 7E-11 2.4E-15 115.3 15.0 122 466-602 6-130 (180)
29 2erx_A GTP-binding protein DI- 99.2 2.7E-11 9.2E-16 116.5 11.4 119 469-602 2-123 (172)
30 1ega_A Protein (GTP-binding pr 99.2 4.8E-12 1.7E-16 138.3 6.8 120 470-601 8-129 (301)
31 1mky_A Probable GTP-binding pr 99.2 5.1E-11 1.8E-15 136.4 14.7 122 468-602 178-306 (439)
32 1kao_A RAP2A; GTP-binding prot 99.2 2.4E-10 8E-15 109.1 16.6 118 470-602 3-122 (167)
33 3bc1_A RAS-related protein RAB 99.2 6.6E-11 2.3E-15 116.1 12.7 122 467-602 8-141 (195)
34 3tkl_A RAS-related protein RAB 99.2 1.4E-10 4.8E-15 114.9 14.9 122 467-603 13-136 (196)
35 2aka_B Dynamin-1; fusion prote 99.2 1.2E-10 4E-15 124.5 15.3 126 468-602 24-206 (299)
36 2j69_A Bacterial dynamin-like 99.2 8.3E-12 2.8E-16 151.3 7.0 172 400-602 12-244 (695)
37 3clv_A RAB5 protein, putative; 99.2 7.9E-11 2.7E-15 115.8 12.6 114 468-599 5-158 (208)
38 3cph_A RAS-related protein SEC 99.2 4.5E-11 1.6E-15 120.2 11.0 120 465-600 15-137 (213)
39 3a1s_A Iron(II) transport prot 99.2 6.6E-11 2.3E-15 126.7 12.9 120 469-602 4-124 (258)
40 2wji_A Ferrous iron transport 99.2 5.9E-11 2E-15 116.2 11.4 118 470-601 3-121 (165)
41 4dsu_A GTPase KRAS, isoform 2B 99.2 2.4E-10 8.3E-15 112.0 15.8 119 469-602 3-123 (189)
42 1upt_A ARL1, ADP-ribosylation 99.2 8.7E-11 3E-15 113.4 12.2 118 466-602 3-122 (171)
43 1z0f_A RAB14, member RAS oncog 99.2 7.9E-11 2.7E-15 114.2 11.8 120 468-602 13-134 (179)
44 1u8z_A RAS-related protein RAL 99.2 9E-11 3.1E-15 112.1 12.0 118 470-602 4-123 (168)
45 2ce2_X GTPase HRAS; signaling 99.2 2.2E-10 7.4E-15 109.0 14.6 118 470-602 3-122 (166)
46 3tw8_B RAS-related protein RAB 99.2 4.1E-11 1.4E-15 116.4 9.7 119 468-602 7-127 (181)
47 1ksh_A ARF-like protein 2; sma 99.2 1E-10 3.4E-15 115.5 12.6 116 468-602 16-133 (186)
48 3k53_A Ferrous iron transport 99.2 9.7E-11 3.3E-15 125.2 13.4 120 470-602 3-123 (271)
49 1z0j_A RAB-22, RAS-related pro 99.2 4.4E-11 1.5E-15 115.1 9.7 119 469-602 5-125 (170)
50 2a9k_A RAS-related protein RAL 99.2 2.6E-10 8.8E-15 111.4 15.3 119 469-602 17-137 (187)
51 3q72_A GTP-binding protein RAD 99.2 3.2E-11 1.1E-15 116.2 8.6 117 470-602 2-120 (166)
52 1g16_A RAS-related protein SEC 99.2 1.5E-10 5.1E-15 111.4 13.2 117 469-601 2-121 (170)
53 2e87_A Hypothetical protein PH 99.2 2.5E-10 8.7E-15 127.2 16.9 127 468-602 165-294 (357)
54 2fg5_A RAB-22B, RAS-related pr 99.2 4.6E-11 1.6E-15 119.5 9.1 121 467-602 20-142 (192)
55 2oil_A CATX-8, RAS-related pro 99.2 5E-11 1.7E-15 118.7 9.2 123 465-602 20-144 (193)
56 2gf0_A GTP-binding protein DI- 99.2 8.6E-11 2.9E-15 116.7 10.8 121 468-602 6-128 (199)
57 2wjg_A FEOB, ferrous iron tran 99.2 1.9E-10 6.5E-15 113.5 13.2 120 469-602 6-126 (188)
58 2ged_A SR-beta, signal recogni 99.2 4.6E-11 1.6E-15 118.6 8.8 136 450-602 27-170 (193)
59 2bme_A RAB4A, RAS-related prot 99.2 6.9E-11 2.4E-15 116.2 9.9 121 467-602 7-129 (186)
60 2y8e_A RAB-protein 6, GH09086P 99.2 6.3E-11 2.2E-15 114.9 9.2 117 470-602 14-133 (179)
61 1wms_A RAB-9, RAB9, RAS-relate 99.2 4.4E-10 1.5E-14 109.3 15.2 119 469-601 6-129 (177)
62 2efe_B Small GTP-binding prote 99.2 1.1E-10 3.7E-15 114.0 10.9 119 469-602 11-131 (181)
63 1c1y_A RAS-related protein RAP 99.2 1.2E-10 3.9E-15 111.8 10.8 118 470-602 3-122 (167)
64 1z06_A RAS-related protein RAB 99.1 1.6E-10 5.3E-15 115.0 11.6 121 469-602 19-141 (189)
65 1tq4_A IIGP1, interferon-induc 99.1 5.7E-12 2E-16 144.5 1.4 275 469-769 68-357 (413)
66 3t5g_A GTP-binding protein RHE 99.1 5.9E-10 2E-14 109.3 15.5 118 470-602 6-125 (181)
67 2gf9_A RAS-related protein RAB 99.1 2.2E-10 7.5E-15 113.9 12.4 120 468-602 20-141 (189)
68 2cxx_A Probable GTP-binding pr 99.1 3.7E-10 1.3E-14 111.1 14.0 121 471-602 2-136 (190)
69 1zbd_A Rabphilin-3A; G protein 99.1 7.7E-11 2.6E-15 118.2 9.1 121 467-602 5-127 (203)
70 1ek0_A Protein (GTP-binding pr 99.1 3.9E-11 1.3E-15 115.2 6.7 119 470-603 3-123 (170)
71 1x3s_A RAS-related protein RAB 99.1 2.7E-10 9.1E-15 112.6 12.7 120 468-601 13-134 (195)
72 2il1_A RAB12; G-protein, GDP, 99.1 2.1E-10 7.2E-15 115.0 12.0 122 466-602 22-145 (192)
73 3kkq_A RAS-related protein M-R 99.1 8.4E-10 2.9E-14 108.4 15.8 120 468-602 16-137 (183)
74 1r2q_A RAS-related protein RAB 99.1 7.4E-11 2.5E-15 113.2 7.9 119 469-602 5-125 (170)
75 1zd9_A ADP-ribosylation factor 99.1 3.3E-10 1.1E-14 113.0 12.9 118 467-602 19-138 (188)
76 2lkc_A Translation initiation 99.1 1.7E-10 5.8E-15 112.3 10.5 116 467-602 5-121 (178)
77 3oes_A GTPase rhebl1; small GT 99.1 3.4E-10 1.2E-14 114.0 12.9 121 467-602 21-143 (201)
78 1z2a_A RAS-related protein RAB 99.1 1.6E-10 5.4E-15 111.0 9.9 117 469-602 4-123 (168)
79 2h57_A ADP-ribosylation factor 99.1 1.3E-10 4.5E-15 115.6 9.7 120 468-602 19-140 (190)
80 3con_A GTPase NRAS; structural 99.1 7E-10 2.4E-14 109.8 14.7 118 470-602 21-140 (190)
81 2fn4_A P23, RAS-related protei 99.1 3E-10 1E-14 110.4 11.7 119 469-602 8-128 (181)
82 3t34_A Dynamin-related protein 99.1 2.5E-10 8.4E-15 127.1 12.5 125 472-603 36-218 (360)
83 1z08_A RAS-related protein RAB 99.1 1.3E-10 4.4E-15 112.1 8.9 118 469-602 5-125 (170)
84 1zj6_A ADP-ribosylation factor 99.1 4.3E-10 1.5E-14 111.6 12.8 116 468-602 14-131 (187)
85 3q85_A GTP-binding protein REM 99.1 2.9E-10 9.9E-15 109.8 11.2 119 471-602 3-123 (169)
86 2bov_A RAla, RAS-related prote 99.1 4.3E-10 1.5E-14 112.3 12.8 119 469-602 13-133 (206)
87 1lnz_A SPO0B-associated GTP-bi 99.1 7.5E-11 2.6E-15 132.0 8.0 124 470-601 158-287 (342)
88 2nzj_A GTP-binding protein REM 99.1 1.2E-10 3.9E-15 113.0 8.2 121 469-602 3-125 (175)
89 2x2e_A Dynamin-1; nitration, h 99.1 2.7E-10 9.3E-15 126.8 12.3 126 469-602 30-211 (353)
90 1r8s_A ADP-ribosylation factor 99.1 1.4E-10 4.8E-15 111.4 8.8 113 471-602 1-115 (164)
91 3dz8_A RAS-related protein RAB 99.1 5.1E-11 1.7E-15 118.9 5.8 124 465-602 18-142 (191)
92 2o52_A RAS-related protein RAB 99.1 1.4E-10 4.7E-15 117.2 9.0 122 466-602 21-144 (200)
93 2h17_A ADP-ribosylation factor 99.1 5.4E-10 1.9E-14 110.5 13.0 117 467-602 18-136 (181)
94 2bcg_Y Protein YP2, GTP-bindin 99.1 6.9E-10 2.4E-14 111.7 13.9 119 468-602 6-127 (206)
95 2yc2_C IFT27, small RAB-relate 99.1 1.6E-10 5.6E-15 115.2 9.1 121 469-602 19-146 (208)
96 2p5s_A RAS and EF-hand domain 99.1 1.6E-10 5.5E-15 116.2 9.0 118 468-601 26-146 (199)
97 2atv_A RERG, RAS-like estrogen 99.1 2.9E-10 1E-14 113.9 10.8 118 469-602 27-146 (196)
98 4djt_A GTP-binding nuclear pro 99.1 1.6E-10 5.4E-15 117.4 9.0 121 468-602 9-131 (218)
99 1moz_A ARL1, ADP-ribosylation 99.1 3.5E-10 1.2E-14 110.8 11.1 116 468-602 16-133 (183)
100 4bas_A ADP-ribosylation factor 99.1 2.8E-10 9.5E-15 113.1 10.4 119 467-602 14-141 (199)
101 3r7w_A Gtpase1, GTP-binding pr 99.1 2.4E-10 8.4E-15 125.0 10.5 124 469-602 2-129 (307)
102 3b1v_A Ferrous iron uptake tra 99.1 1.5E-10 5.1E-15 125.4 8.6 118 470-602 3-121 (272)
103 2qpt_A EH domain-containing pr 99.1 1.1E-10 3.6E-15 138.2 8.0 128 467-602 62-232 (550)
104 2a5j_A RAS-related protein RAB 99.1 3.2E-10 1.1E-14 113.1 10.3 121 467-602 18-140 (191)
105 2x77_A ADP-ribosylation factor 99.1 5E-10 1.7E-14 111.1 11.2 115 469-602 21-137 (189)
106 2fu5_C RAS-related protein RAB 99.1 2.8E-10 9.5E-15 111.8 9.3 119 468-602 6-127 (183)
107 2b6h_A ADP-ribosylation factor 99.1 1.1E-09 3.9E-14 110.1 13.9 115 469-602 28-144 (192)
108 1fzq_A ADP-ribosylation factor 99.1 1.3E-09 4.3E-14 108.5 14.1 116 468-602 14-131 (181)
109 1ky3_A GTP-binding protein YPT 99.1 1.8E-10 6.3E-15 112.0 7.3 120 469-602 7-132 (182)
110 2f7s_A C25KG, RAS-related prot 99.1 7.4E-10 2.5E-14 112.4 12.0 120 466-602 21-155 (217)
111 2hxs_A RAB-26, RAS-related pro 99.0 2.3E-10 7.7E-15 111.5 7.6 120 469-602 5-129 (178)
112 3qq5_A Small GTP-binding prote 99.0 1.3E-10 4.4E-15 133.6 6.6 121 468-603 32-155 (423)
113 2qag_A Septin-2, protein NEDD5 99.0 2.9E-10 1E-14 127.6 8.9 128 469-602 36-188 (361)
114 2hup_A RAS-related protein RAB 99.0 6.1E-10 2.1E-14 112.9 10.4 122 465-602 24-148 (201)
115 1vg8_A RAS-related protein RAB 99.0 4.1E-10 1.4E-14 112.7 9.1 119 469-601 7-130 (207)
116 2fh5_B SR-beta, signal recogni 99.0 8.8E-10 3E-14 111.6 11.5 117 469-602 6-129 (214)
117 2iwr_A Centaurin gamma 1; ANK 99.0 4.4E-10 1.5E-14 109.9 8.6 113 469-601 6-121 (178)
118 2q3h_A RAS homolog gene family 99.0 5.3E-10 1.8E-14 111.9 9.1 118 466-602 16-138 (201)
119 3llu_A RAS-related GTP-binding 99.0 5.5E-10 1.9E-14 112.3 9.1 125 468-602 18-143 (196)
120 1pui_A ENGB, probable GTP-bind 99.0 1E-09 3.4E-14 110.7 10.9 128 466-602 22-151 (210)
121 2ew1_A RAS-related protein RAB 99.0 6.9E-10 2.4E-14 113.4 9.5 121 467-602 23-145 (201)
122 1nrj_B SR-beta, signal recogni 99.0 1.6E-09 5.4E-14 110.1 11.9 117 469-602 11-134 (218)
123 3gj0_A GTP-binding nuclear pro 99.0 3.5E-10 1.2E-14 115.6 7.2 120 467-602 12-133 (221)
124 1f6b_A SAR1; gtpases, N-termin 99.0 1.7E-09 5.6E-14 109.6 11.8 115 469-602 24-140 (198)
125 3reg_A RHO-like small GTPase; 99.0 9E-10 3.1E-14 109.9 9.7 118 468-602 21-141 (194)
126 1wxq_A GTP-binding protein; st 99.0 3E-10 1E-14 129.5 7.0 88 471-565 1-113 (397)
127 3zvr_A Dynamin-1; hydrolase, D 99.0 3.5E-09 1.2E-13 129.5 16.8 128 469-604 50-233 (772)
128 1m2o_B GTP-binding protein SAR 99.0 9.2E-10 3.1E-14 110.6 9.6 115 469-602 22-138 (190)
129 3cpj_B GTP-binding protein YPT 99.0 6E-10 2E-14 114.4 8.0 120 468-602 11-132 (223)
130 3l0i_B RAS-related protein RAB 99.0 1.2E-10 4.1E-15 117.1 2.7 120 468-603 31-153 (199)
131 2j1l_A RHO-related GTP-binding 99.0 8.3E-10 2.8E-14 112.9 8.9 117 469-602 33-152 (214)
132 2fv8_A H6, RHO-related GTP-bin 99.0 7.2E-10 2.5E-14 112.4 8.1 116 470-602 25-143 (207)
133 2atx_A Small GTP binding prote 99.0 7.8E-10 2.7E-14 110.1 7.9 117 469-602 17-136 (194)
134 3j2k_7 ERF3, eukaryotic polype 99.0 6.3E-09 2.2E-13 119.7 16.0 119 468-602 15-169 (439)
135 3c5c_A RAS-like protein 12; GD 98.9 1.2E-09 4.2E-14 109.2 8.4 118 469-602 20-141 (187)
136 1mh1_A RAC1; GTP-binding, GTPa 98.9 9.9E-10 3.4E-14 107.4 7.2 116 470-602 5-123 (186)
137 3o47_A ADP-ribosylation factor 98.9 3.3E-09 1.1E-13 117.4 12.0 115 469-602 164-280 (329)
138 2gco_A H9, RHO-related GTP-bin 98.9 7.1E-10 2.4E-14 111.9 5.7 117 469-602 24-143 (201)
139 3t1o_A Gliding protein MGLA; G 98.9 2.2E-09 7.4E-14 105.8 8.8 121 469-602 13-149 (198)
140 4gzl_A RAS-related C3 botulinu 98.9 7.2E-10 2.5E-14 112.5 5.2 117 469-602 29-148 (204)
141 3cbq_A GTP-binding protein REM 98.9 6.3E-09 2.2E-13 105.3 12.0 121 468-602 21-144 (195)
142 1m7b_A RND3/RHOE small GTP-bin 98.9 9.9E-10 3.4E-14 108.9 5.9 117 469-602 6-125 (184)
143 3ihw_A Centg3; RAS, centaurin, 98.9 1.5E-08 5.2E-13 101.4 14.3 113 468-601 18-132 (184)
144 3sop_A Neuronal-specific septi 98.9 5.3E-09 1.8E-13 113.3 11.6 128 469-602 1-154 (270)
145 2qag_C Septin-7; cell cycle, c 98.9 1.8E-08 6E-13 115.9 15.9 129 468-602 29-181 (418)
146 3q3j_B RHO-related GTP-binding 98.9 2.1E-09 7.3E-14 110.3 7.4 118 468-602 25-145 (214)
147 2zej_A Dardarin, leucine-rich 98.9 3.3E-09 1.1E-13 105.6 7.7 116 470-601 2-125 (184)
148 1gwn_A RHO-related GTP-binding 98.8 1.7E-09 5.8E-14 110.6 5.7 117 469-602 27-146 (205)
149 2j0v_A RAC-like GTP-binding pr 98.8 3.3E-09 1.1E-13 107.2 7.5 116 469-602 8-127 (212)
150 3bwd_D RAC-like GTP-binding pr 98.8 8.2E-10 2.8E-14 107.9 2.7 116 469-602 7-126 (182)
151 3th5_A RAS-related C3 botulinu 98.3 4E-10 1.4E-14 113.6 0.0 117 468-602 28-148 (204)
152 3lvq_E ARF-GAP with SH3 domain 98.8 2.7E-09 9.3E-14 123.2 6.6 116 468-602 320-437 (497)
153 3h2y_A GTPase family protein; 98.8 7.7E-10 2.6E-14 124.7 1.7 120 470-602 160-287 (368)
154 2wkq_A NPH1-1, RAS-related C3 98.8 7.1E-09 2.4E-13 111.4 9.0 117 467-602 152-273 (332)
155 3p26_A Elongation factor 1 alp 98.8 1.4E-08 4.8E-13 117.8 11.6 118 468-602 31-185 (483)
156 3ec1_A YQEH GTPase; atnos1, at 98.8 8E-10 2.7E-14 124.5 1.1 122 470-603 162-289 (369)
157 2g3y_A GTP-binding protein GEM 98.8 1.7E-08 5.7E-13 105.1 10.5 121 468-602 35-159 (211)
158 3sjy_A Translation initiation 98.8 2.1E-08 7E-13 113.7 10.9 118 468-602 6-143 (403)
159 3izq_1 HBS1P, elongation facto 98.7 2.9E-08 9.9E-13 118.9 12.1 119 468-602 165-319 (611)
160 2cjw_A GTP-binding protein GEM 98.7 2.6E-08 8.7E-13 100.6 9.8 119 470-602 6-128 (192)
161 1wb1_A Translation elongation 98.7 5.2E-08 1.8E-12 113.5 13.7 115 469-602 18-139 (482)
162 2qag_B Septin-6, protein NEDD5 98.7 4.1E-08 1.4E-12 113.2 12.5 130 467-602 37-190 (427)
163 2f9l_A RAB11B, member RAS onco 98.7 4.5E-08 1.5E-12 98.6 11.3 119 469-602 4-124 (199)
164 1kk1_A EIF2gamma; initiation o 98.7 1.2E-07 4.2E-12 107.5 14.8 118 469-602 9-151 (410)
165 1puj_A YLQF, conserved hypothe 98.7 1.3E-08 4.5E-13 110.8 6.2 64 467-533 117-180 (282)
166 1zun_B Sulfate adenylate trans 98.7 5E-08 1.7E-12 111.7 10.9 118 468-602 22-171 (434)
167 1oix_A RAS-related protein RAB 98.7 9.1E-08 3.1E-12 96.3 11.5 120 467-601 26-147 (191)
168 2xex_A Elongation factor G; GT 98.7 4.1E-08 1.4E-12 119.2 10.6 117 468-602 8-141 (693)
169 4dkx_A RAS-related protein RAB 98.7 5.5E-08 1.9E-12 101.8 10.2 117 470-602 13-132 (216)
170 3tr5_A RF-3, peptide chain rel 98.7 2.2E-08 7.7E-13 118.0 7.7 114 470-601 13-147 (528)
171 2qnr_A Septin-2, protein NEDD5 98.6 1.7E-07 5.8E-12 102.7 13.1 128 469-602 17-169 (301)
172 2j37_W Signal recognition part 98.6 1.5E-07 5E-12 110.7 13.4 138 450-602 77-254 (504)
173 1s0u_A EIF-2-gamma, translatio 98.6 1.5E-07 5.3E-12 106.7 12.5 118 469-602 7-149 (408)
174 2c78_A Elongation factor TU-A; 98.6 3.6E-08 1.2E-12 111.7 7.3 115 469-601 10-141 (405)
175 1d2e_A Elongation factor TU (E 98.6 8.2E-08 2.8E-12 108.7 9.9 115 469-601 2-132 (397)
176 2elf_A Protein translation elo 98.6 7.3E-08 2.5E-12 108.8 9.1 101 472-600 23-125 (370)
177 1jal_A YCHF protein; nucleotid 98.6 1.9E-08 6.6E-13 113.8 4.0 88 470-565 2-108 (363)
178 1jny_A EF-1-alpha, elongation 98.6 5.1E-08 1.7E-12 111.8 7.5 118 469-602 5-158 (435)
179 1udx_A The GTP-binding protein 98.6 3.6E-08 1.2E-12 113.3 6.1 125 467-601 154-282 (416)
180 3dpu_A RAB family protein; roc 98.6 1.5E-07 5.1E-12 110.3 11.2 115 467-602 38-164 (535)
181 3mca_A HBS1, elongation factor 98.5 6E-09 2E-13 124.4 -1.4 119 468-602 175-329 (592)
182 1f5n_A Interferon-induced guan 98.5 2.4E-07 8.1E-12 110.8 12.0 64 469-532 37-105 (592)
183 2www_A Methylmalonic aciduria 98.5 1.7E-08 5.9E-13 112.8 1.7 25 468-492 72-96 (349)
184 2h5e_A Peptide chain release f 98.5 1.9E-07 6.5E-12 110.2 10.5 116 469-602 12-148 (529)
185 2ohf_A Protein OLA1, GTP-bindi 98.5 4.3E-08 1.5E-12 112.1 4.8 92 466-564 18-127 (396)
186 1f60_A Elongation factor EEF1A 98.5 7.6E-08 2.6E-12 111.3 6.8 117 469-601 6-158 (458)
187 1dar_A EF-G, elongation factor 98.5 3.5E-07 1.2E-11 111.0 11.8 117 468-602 10-143 (691)
188 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 1.6E-07 5.3E-12 107.3 7.7 92 466-564 16-126 (392)
189 3p32_A Probable GTPase RV1496/ 98.5 1.8E-07 6E-12 104.5 7.9 108 468-601 77-230 (355)
190 1r5b_A Eukaryotic peptide chai 98.4 2E-07 7E-12 108.0 7.7 118 469-602 42-195 (467)
191 3izy_P Translation initiation 98.4 1.3E-08 4.3E-13 120.5 -3.3 115 468-602 2-118 (537)
192 2p67_A LAO/AO transport system 98.4 5.7E-07 2E-11 100.0 9.4 109 467-601 53-207 (341)
193 2rdo_7 EF-G, elongation factor 98.4 1.8E-06 6.1E-11 105.1 14.3 118 467-602 7-148 (704)
194 1zo1_I IF2, translation initia 98.4 8.6E-08 2.9E-12 112.6 1.9 114 469-602 3-117 (501)
195 2dby_A GTP-binding protein; GD 98.3 3.2E-07 1.1E-11 103.9 6.0 87 471-565 2-111 (368)
196 3dm5_A SRP54, signal recogniti 98.3 2.8E-06 9.6E-11 98.5 13.9 138 451-602 78-253 (443)
197 3cb4_D GTP-binding protein LEP 98.3 1.4E-06 4.7E-11 104.5 10.7 114 471-602 5-137 (599)
198 1n0u_A EF-2, elongation factor 98.3 8.8E-07 3E-11 109.8 8.6 114 470-601 19-163 (842)
199 3avx_A Elongation factor TS, e 98.3 1.4E-06 4.8E-11 110.5 10.2 117 468-601 294-425 (1289)
200 3cnl_A YLQF, putative uncharac 98.3 2.1E-07 7.1E-12 100.4 2.3 60 471-533 100-159 (262)
201 2ywe_A GTP-binding protein LEP 98.2 1.6E-06 5.4E-11 104.0 9.4 115 470-602 6-139 (600)
202 2dy1_A Elongation factor G; tr 98.2 3.8E-06 1.3E-10 101.6 12.4 117 467-601 6-139 (665)
203 2qm8_A GTPase/ATPase; G protei 98.2 5.9E-07 2E-11 100.1 4.7 26 467-492 52-77 (337)
204 1g7s_A Translation initiation 98.2 1.1E-06 3.9E-11 105.0 6.6 112 470-602 5-136 (594)
205 3c5h_A Glucocorticoid receptor 98.2 1.4E-06 4.8E-11 92.5 6.6 28 466-493 15-51 (255)
206 3r7w_B Gtpase2, GTP-binding pr 98.1 4.4E-06 1.5E-10 93.6 9.4 119 472-602 1-120 (331)
207 2v3c_C SRP54, signal recogniti 98.1 1.1E-05 3.8E-10 93.1 11.4 118 470-601 99-251 (432)
208 3szr_A Interferon-induced GTP- 98.1 1.1E-05 3.8E-10 96.6 11.7 80 518-603 147-229 (608)
209 3vqt_A RF-3, peptide chain rel 98.0 1.5E-05 5.1E-10 94.5 10.2 114 471-602 32-166 (548)
210 3kl4_A SRP54, signal recogniti 97.9 4.2E-05 1.4E-09 88.5 12.3 119 469-601 96-251 (433)
211 2wsm_A Hydrogenase expression/ 97.9 5.7E-06 1.9E-10 84.2 4.4 24 470-493 30-53 (221)
212 3q5d_A Atlastin-1; G protein, 97.9 1.4E-05 4.8E-10 92.8 7.0 61 471-532 68-154 (447)
213 1yrb_A ATP(GTP)binding protein 97.8 2.2E-06 7.4E-11 89.7 -0.8 32 469-500 13-49 (262)
214 1j8m_F SRP54, signal recogniti 97.6 0.00043 1.5E-08 76.0 14.2 120 470-601 98-252 (297)
215 2xxa_A Signal recognition part 97.6 0.00095 3.3E-08 77.1 16.8 138 450-601 76-253 (433)
216 3e70_C DPA, signal recognition 97.6 0.00027 9.3E-09 78.8 11.6 120 468-601 127-281 (328)
217 3j25_A Tetracycline resistance 97.5 2.9E-05 1E-09 93.5 3.2 113 472-602 4-133 (638)
218 2px0_A Flagellar biosynthesis 97.5 0.00098 3.4E-08 73.1 14.5 119 469-601 104-252 (296)
219 4fn5_A EF-G 1, elongation fact 97.5 0.00032 1.1E-08 85.5 10.9 114 471-602 14-151 (709)
220 2yhs_A FTSY, cell division pro 97.4 0.00024 8.2E-09 83.6 8.9 27 467-493 290-316 (503)
221 1rj9_A FTSY, signal recognitio 97.3 0.00095 3.3E-08 73.6 12.0 24 469-492 101-124 (304)
222 1t9h_A YLOQ, probable GTPase E 97.2 9.2E-05 3.1E-09 82.1 1.5 60 469-531 172-237 (307)
223 2og2_A Putative signal recogni 97.1 0.0048 1.6E-07 69.8 14.9 26 468-493 155-180 (359)
224 1zu4_A FTSY; GTPase, signal re 97.0 0.012 4.2E-07 65.2 16.8 122 469-601 104-267 (320)
225 3b9q_A Chloroplast SRP recepto 96.9 0.0088 3E-07 65.8 14.5 26 468-493 98-123 (302)
226 2rcn_A Probable GTPase ENGC; Y 96.8 0.00034 1.2E-08 79.1 2.3 60 470-531 215-281 (358)
227 2ffh_A Protein (FFH); SRP54, s 96.8 0.011 3.7E-07 68.4 14.6 24 469-492 97-120 (425)
228 1vma_A Cell division protein F 96.8 0.0051 1.7E-07 68.0 11.3 24 469-492 103-126 (306)
229 2yv5_A YJEQ protein; hydrolase 96.7 0.0013 4.3E-08 72.2 5.1 58 470-530 165-228 (302)
230 1u0l_A Probable GTPase ENGC; p 96.5 0.0011 3.9E-08 72.3 3.5 61 470-532 169-235 (301)
231 4ido_A Atlastin-1; GTPase, GTP 96.3 0.0065 2.2E-07 70.8 8.5 65 469-533 65-155 (457)
232 1ls1_A Signal recognition part 96.1 0.066 2.2E-06 58.5 14.6 24 469-492 97-120 (295)
233 4fid_A G protein alpha subunit 95.9 0.023 7.9E-07 63.9 9.8 81 508-601 151-241 (340)
234 3ney_A 55 kDa erythrocyte memb 95.5 0.0055 1.9E-07 63.9 2.7 58 469-528 18-76 (197)
235 1kgd_A CASK, peripheral plasma 95.2 0.0079 2.7E-07 60.2 2.6 25 470-494 5-29 (180)
236 3c8u_A Fructokinase; YP_612366 95.1 0.015 5.2E-07 59.4 4.5 28 467-494 19-46 (208)
237 1zp6_A Hypothetical protein AT 95.1 0.013 4.4E-07 58.2 3.8 27 467-493 6-32 (191)
238 1lvg_A Guanylate kinase, GMP k 95.0 0.0074 2.5E-07 61.6 2.1 24 470-493 4-27 (198)
239 1ex7_A Guanylate kinase; subst 95.0 0.0071 2.4E-07 62.4 1.8 36 473-508 4-39 (186)
240 3a00_A Guanylate kinase, GMP k 94.9 0.0082 2.8E-07 60.3 1.8 24 472-495 3-26 (186)
241 1ye8_A Protein THEP1, hypothet 94.8 0.011 3.9E-07 59.9 2.5 24 471-494 1-24 (178)
242 3tau_A Guanylate kinase, GMP k 94.7 0.014 4.7E-07 59.9 3.1 27 469-495 7-33 (208)
243 1znw_A Guanylate kinase, GMP k 94.7 0.013 4.3E-07 59.9 2.7 29 466-494 16-44 (207)
244 3tr0_A Guanylate kinase, GMP k 94.6 0.014 4.9E-07 58.3 2.8 26 469-494 6-31 (205)
245 1z6g_A Guanylate kinase; struc 94.5 0.013 4.6E-07 60.7 2.3 28 467-494 20-47 (218)
246 1s96_A Guanylate kinase, GMP k 94.3 0.018 6.2E-07 60.4 2.8 28 468-495 14-41 (219)
247 3tif_A Uncharacterized ABC tra 94.1 0.024 8.2E-07 59.9 3.4 29 467-495 28-56 (235)
248 2j41_A Guanylate kinase; GMP, 94.1 0.023 7.8E-07 56.9 3.0 27 468-494 4-30 (207)
249 2pcj_A ABC transporter, lipopr 94.0 0.026 8.8E-07 59.2 3.2 29 467-495 27-55 (224)
250 2eyu_A Twitching motility prot 94.0 0.023 7.9E-07 61.1 2.9 27 467-493 22-48 (261)
251 2cbz_A Multidrug resistance-as 93.9 0.028 9.5E-07 59.5 3.4 29 467-495 28-56 (237)
252 3asz_A Uridine kinase; cytidin 93.8 0.025 8.7E-07 57.2 2.8 25 469-493 5-29 (211)
253 2hf9_A Probable hydrogenase ni 93.7 0.033 1.1E-06 56.6 3.4 24 470-493 38-61 (226)
254 1b0u_A Histidine permease; ABC 93.7 0.032 1.1E-06 60.0 3.4 29 467-495 29-57 (262)
255 1g6h_A High-affinity branched- 93.6 0.031 1.1E-06 59.8 3.1 28 467-494 30-57 (257)
256 1mv5_A LMRA, multidrug resista 93.6 0.037 1.3E-06 58.6 3.7 29 467-495 25-53 (243)
257 2ff7_A Alpha-hemolysin translo 93.6 0.032 1.1E-06 59.5 3.1 28 467-494 32-59 (247)
258 2pze_A Cystic fibrosis transme 93.6 0.032 1.1E-06 58.6 3.1 29 467-495 31-59 (229)
259 2ghi_A Transport protein; mult 93.6 0.035 1.2E-06 59.6 3.4 28 467-494 43-70 (260)
260 2olj_A Amino acid ABC transpor 93.5 0.037 1.3E-06 59.8 3.4 29 467-495 47-75 (263)
261 4g1u_C Hemin import ATP-bindin 93.5 0.033 1.1E-06 60.1 3.1 29 467-495 34-62 (266)
262 2zu0_C Probable ATP-dependent 93.5 0.038 1.3E-06 59.6 3.4 27 467-493 43-69 (267)
263 2ixe_A Antigen peptide transpo 93.4 0.038 1.3E-06 59.8 3.4 28 467-494 42-69 (271)
264 1ji0_A ABC transporter; ATP bi 93.4 0.035 1.2E-06 58.8 3.1 29 467-495 29-57 (240)
265 3gfo_A Cobalt import ATP-bindi 93.4 0.035 1.2E-06 60.4 3.1 28 467-494 31-58 (275)
266 4gp7_A Metallophosphoesterase; 93.4 0.036 1.2E-06 55.1 3.0 25 468-492 7-31 (171)
267 1vpl_A ABC transporter, ATP-bi 93.4 0.04 1.4E-06 59.2 3.4 29 467-495 38-66 (256)
268 3lnc_A Guanylate kinase, GMP k 93.3 0.026 8.8E-07 58.4 1.8 28 467-494 24-52 (231)
269 2d2e_A SUFC protein; ABC-ATPas 93.3 0.039 1.3E-06 58.8 3.1 27 467-493 26-52 (250)
270 2qi9_C Vitamin B12 import ATP- 93.3 0.039 1.3E-06 59.1 3.1 29 467-495 23-51 (249)
271 1sgw_A Putative ABC transporte 93.3 0.035 1.2E-06 58.2 2.7 29 467-495 32-60 (214)
272 2ihy_A ABC transporter, ATP-bi 93.3 0.038 1.3E-06 60.1 3.1 29 467-495 44-72 (279)
273 2qz4_A Paraplegin; AAA+, SPG7, 93.2 0.52 1.8E-05 48.7 11.6 25 468-492 37-61 (262)
274 2gza_A Type IV secretion syste 93.2 0.032 1.1E-06 62.6 2.5 27 468-494 173-199 (361)
275 2yz2_A Putative ABC transporte 93.2 0.044 1.5E-06 59.0 3.4 29 467-495 30-58 (266)
276 4b4t_L 26S protease subunit RP 93.2 0.31 1E-05 56.6 10.6 74 467-565 212-285 (437)
277 4dzz_A Plasmid partitioning pr 93.1 0.076 2.6E-06 53.0 4.9 68 517-600 75-142 (206)
278 2v9p_A Replication protein E1; 93.1 0.039 1.3E-06 61.2 2.9 28 466-493 122-149 (305)
279 1htw_A HI0065; nucleotide-bind 93.1 0.043 1.5E-06 54.9 3.0 28 467-494 30-57 (158)
280 2nq2_C Hypothetical ABC transp 93.1 0.043 1.5E-06 58.7 3.1 29 467-495 28-56 (253)
281 3ec2_A DNA replication protein 93.0 0.065 2.2E-06 53.0 4.1 25 469-493 37-61 (180)
282 3nh6_A ATP-binding cassette SU 93.0 0.033 1.1E-06 61.7 2.1 29 467-495 77-105 (306)
283 3h4m_A Proteasome-activating n 92.9 0.24 8E-06 52.3 8.5 26 468-493 49-74 (285)
284 1kag_A SKI, shikimate kinase I 92.9 0.037 1.3E-06 54.0 2.1 24 470-493 4-27 (173)
285 2qor_A Guanylate kinase; phosp 92.9 0.048 1.6E-06 55.4 3.0 27 468-494 10-36 (204)
286 4eun_A Thermoresistant glucoki 92.8 0.045 1.5E-06 55.4 2.7 25 469-493 28-52 (200)
287 1fnn_A CDC6P, cell division co 92.8 0.63 2.2E-05 50.7 12.0 22 472-493 46-67 (389)
288 2bdt_A BH3686; alpha-beta prot 92.7 0.041 1.4E-06 54.8 2.2 21 472-492 4-24 (189)
289 2bbw_A Adenylate kinase 4, AK4 92.7 0.059 2E-06 56.3 3.5 26 470-495 27-55 (246)
290 2onk_A Molybdate/tungstate ABC 92.7 0.057 1.9E-06 57.5 3.4 28 467-495 22-49 (240)
291 2bbs_A Cystic fibrosis transme 92.6 0.062 2.1E-06 58.9 3.5 29 467-495 61-89 (290)
292 4a74_A DNA repair and recombin 92.5 0.049 1.7E-06 55.1 2.5 27 467-493 22-48 (231)
293 2qt1_A Nicotinamide riboside k 92.5 0.077 2.6E-06 53.7 3.9 30 465-494 16-45 (207)
294 2jeo_A Uridine-cytidine kinase 92.5 0.052 1.8E-06 56.9 2.8 27 467-493 22-48 (245)
295 2ewv_A Twitching motility prot 92.5 0.051 1.8E-06 61.3 2.9 26 468-493 134-159 (372)
296 2oap_1 GSPE-2, type II secreti 92.4 0.044 1.5E-06 64.6 2.3 24 470-493 260-283 (511)
297 3b85_A Phosphate starvation-in 92.4 0.046 1.6E-06 56.9 2.2 31 469-500 21-51 (208)
298 3uie_A Adenylyl-sulfate kinase 92.3 0.058 2E-06 54.6 2.8 25 469-493 24-48 (200)
299 3jvv_A Twitching mobility prot 92.3 0.055 1.9E-06 61.0 2.8 24 470-493 123-146 (356)
300 2pt7_A CAG-ALFA; ATPase, prote 92.3 0.039 1.3E-06 61.3 1.5 25 470-494 171-195 (330)
301 2pjz_A Hypothetical protein ST 92.2 0.07 2.4E-06 57.6 3.3 27 467-494 28-54 (263)
302 4b4t_J 26S protease regulatory 92.2 0.62 2.1E-05 53.6 11.2 74 467-565 179-252 (405)
303 3aez_A Pantothenate kinase; tr 92.1 0.062 2.1E-06 59.3 2.9 27 467-493 87-113 (312)
304 2i3b_A HCR-ntpase, human cance 92.1 0.053 1.8E-06 55.7 2.1 23 472-494 3-25 (189)
305 3fvq_A Fe(3+) IONS import ATP- 92.0 0.078 2.7E-06 60.1 3.6 29 467-495 27-55 (359)
306 2p5t_B PEZT; postsegregational 92.0 0.12 4.2E-06 54.5 4.9 28 466-493 28-55 (253)
307 1cke_A CK, MSSA, protein (cyti 92.0 0.064 2.2E-06 54.6 2.6 24 470-493 5-28 (227)
308 4b4t_H 26S protease regulatory 92.0 0.64 2.2E-05 54.5 11.2 74 467-565 240-313 (467)
309 1knq_A Gluconate kinase; ALFA/ 91.9 0.07 2.4E-06 52.3 2.7 24 470-493 8-31 (175)
310 2ehv_A Hypothetical protein PH 91.9 0.075 2.6E-06 54.5 3.0 26 467-492 27-52 (251)
311 1rz3_A Hypothetical protein rb 91.9 0.14 4.8E-06 52.0 5.0 26 467-492 19-44 (201)
312 2yyz_A Sugar ABC transporter, 91.7 0.085 2.9E-06 59.7 3.4 28 467-494 26-53 (359)
313 1z47_A CYSA, putative ABC-tran 91.7 0.079 2.7E-06 59.9 3.1 29 467-495 38-66 (355)
314 1d2n_A N-ethylmaleimide-sensit 91.7 0.31 1.1E-05 51.4 7.6 25 469-493 63-87 (272)
315 2it1_A 362AA long hypothetical 91.7 0.087 3E-06 59.7 3.4 29 467-495 26-54 (362)
316 3lw7_A Adenylate kinase relate 91.6 0.088 3E-06 50.3 3.0 20 471-490 2-21 (179)
317 3rlf_A Maltose/maltodextrin im 91.6 0.089 3E-06 60.1 3.4 29 467-495 26-54 (381)
318 3kb2_A SPBC2 prophage-derived 91.6 0.09 3.1E-06 50.7 3.0 22 472-493 3-24 (173)
319 4b4t_K 26S protease regulatory 91.6 0.71 2.4E-05 53.4 10.9 73 467-564 203-275 (428)
320 1v43_A Sugar-binding transport 91.5 0.092 3.2E-06 59.7 3.4 29 467-495 34-62 (372)
321 4b4t_I 26S protease regulatory 91.5 0.6 2.1E-05 54.3 10.2 74 467-565 213-286 (437)
322 1ly1_A Polynucleotide kinase; 91.5 0.096 3.3E-06 50.9 3.1 22 471-492 3-24 (181)
323 3tui_C Methionine import ATP-b 91.4 0.094 3.2E-06 59.6 3.4 29 467-495 51-79 (366)
324 2rhm_A Putative kinase; P-loop 91.4 0.11 3.8E-06 51.3 3.6 24 469-492 4-27 (193)
325 1odf_A YGR205W, hypothetical 3 91.4 0.15 5.2E-06 55.7 4.9 27 467-493 28-54 (290)
326 1kht_A Adenylate kinase; phosp 91.4 0.1 3.5E-06 51.3 3.2 23 470-492 3-25 (192)
327 1p9r_A General secretion pathw 91.3 0.081 2.8E-06 60.9 2.8 24 470-493 167-190 (418)
328 2if2_A Dephospho-COA kinase; a 91.3 0.085 2.9E-06 53.0 2.6 22 471-492 2-23 (204)
329 3vaa_A Shikimate kinase, SK; s 91.3 0.1 3.6E-06 52.7 3.3 24 469-492 24-47 (199)
330 1g29_1 MALK, maltose transport 91.3 0.092 3.1E-06 59.6 3.1 29 467-495 26-54 (372)
331 1gvn_B Zeta; postsegregational 91.3 0.2 6.8E-06 54.4 5.6 26 468-493 31-56 (287)
332 3cm0_A Adenylate kinase; ATP-b 91.2 0.099 3.4E-06 51.5 2.9 24 469-492 3-26 (186)
333 3gd7_A Fusion complex of cysti 91.1 0.11 3.7E-06 59.4 3.6 28 467-494 44-71 (390)
334 1qhx_A CPT, protein (chloramph 91.1 0.11 3.8E-06 50.8 3.2 24 470-493 3-26 (178)
335 1jjv_A Dephospho-COA kinase; P 91.0 0.11 3.7E-06 52.4 3.1 22 471-492 3-24 (206)
336 1jbk_A CLPB protein; beta barr 91.0 0.23 8E-06 47.6 5.3 24 470-493 43-66 (195)
337 4e22_A Cytidylate kinase; P-lo 91.0 0.12 4.2E-06 54.6 3.5 23 469-491 26-48 (252)
338 3d31_A Sulfate/molybdate ABC t 90.9 0.08 2.7E-06 59.6 2.2 29 467-495 23-51 (348)
339 2f1r_A Molybdopterin-guanine d 90.7 0.055 1.9E-06 54.8 0.6 22 472-493 4-25 (171)
340 1lw7_A Transcriptional regulat 90.7 0.078 2.7E-06 59.1 1.8 29 466-494 164-194 (365)
341 4b4t_M 26S protease regulatory 90.7 0.66 2.3E-05 53.8 9.6 73 467-564 212-284 (434)
342 1sq5_A Pantothenate kinase; P- 90.7 0.11 3.7E-06 56.8 2.9 26 468-493 78-103 (308)
343 3fb4_A Adenylate kinase; psych 90.6 0.12 4.2E-06 52.3 3.1 22 471-492 1-22 (216)
344 2v54_A DTMP kinase, thymidylat 90.6 0.14 4.9E-06 51.0 3.5 25 469-493 3-27 (204)
345 2jaq_A Deoxyguanosine kinase; 90.6 0.13 4.3E-06 51.1 3.0 21 472-492 2-22 (205)
346 3qf7_A RAD50; ABC-ATPase, ATPa 90.5 0.45 1.5E-05 53.4 7.7 24 467-491 21-44 (365)
347 1oxx_K GLCV, glucose, ABC tran 90.5 0.076 2.6E-06 59.8 1.5 29 467-495 28-56 (353)
348 3dl0_A Adenylate kinase; phosp 90.4 0.13 4.6E-06 52.1 3.1 22 471-492 1-22 (216)
349 2kjq_A DNAA-related protein; s 90.3 0.11 3.7E-06 51.1 2.3 26 469-494 35-60 (149)
350 1nks_A Adenylate kinase; therm 90.3 0.14 4.9E-06 50.1 3.1 21 472-492 3-23 (194)
351 2vp4_A Deoxynucleoside kinase; 90.3 0.12 4.1E-06 53.7 2.7 27 467-493 17-43 (230)
352 1y63_A LMAJ004144AAA protein; 90.3 0.16 5.6E-06 50.7 3.5 25 469-493 9-33 (184)
353 3t61_A Gluconokinase; PSI-biol 90.2 0.14 4.6E-06 51.7 3.0 24 470-493 18-41 (202)
354 3b60_A Lipid A export ATP-bind 90.2 0.14 4.9E-06 60.8 3.5 26 469-494 368-393 (582)
355 3tlx_A Adenylate kinase 2; str 90.1 0.2 6.9E-06 52.7 4.3 25 468-492 27-51 (243)
356 2plr_A DTMP kinase, probable t 90.1 0.15 5.2E-06 50.8 3.2 23 470-492 4-26 (213)
357 1aky_A Adenylate kinase; ATP:A 90.1 0.15 5.3E-06 52.0 3.3 24 469-492 3-26 (220)
358 2w0m_A SSO2452; RECA, SSPF, un 90.1 0.12 4.1E-06 52.0 2.4 26 467-492 20-45 (235)
359 1ixz_A ATP-dependent metallopr 90.0 0.11 3.8E-06 54.2 2.2 21 473-493 52-72 (254)
360 2c95_A Adenylate kinase 1; tra 89.9 0.19 6.3E-06 49.8 3.6 25 468-492 7-31 (196)
361 1nn5_A Similar to deoxythymidy 89.9 0.18 6.2E-06 50.6 3.5 24 469-492 8-31 (215)
362 3trf_A Shikimate kinase, SK; a 89.8 0.17 5.7E-06 50.0 3.2 23 470-492 5-27 (185)
363 2cdn_A Adenylate kinase; phosp 89.8 0.18 6.1E-06 50.8 3.4 25 468-492 18-42 (201)
364 1tev_A UMP-CMP kinase; ploop, 89.8 0.16 5.5E-06 49.8 3.1 23 470-492 3-25 (196)
365 2wwf_A Thymidilate kinase, put 89.8 0.18 6.2E-06 50.6 3.5 24 469-492 9-32 (212)
366 1yqt_A RNAse L inhibitor; ATP- 89.8 0.16 5.6E-06 60.0 3.6 30 466-495 43-72 (538)
367 1np6_A Molybdopterin-guanine d 89.8 0.12 4.1E-06 52.5 2.2 23 471-493 7-29 (174)
368 3kta_A Chromosome segregation 89.8 0.19 6.6E-06 49.5 3.6 24 468-492 25-48 (182)
369 2yl4_A ATP-binding cassette SU 89.7 0.14 4.8E-06 61.0 3.0 27 469-495 369-395 (595)
370 3qf4_B Uncharacterized ABC tra 89.6 0.16 5.3E-06 60.7 3.3 27 469-495 380-406 (598)
371 3b5x_A Lipid A export ATP-bind 89.6 0.16 5.3E-06 60.4 3.3 28 468-495 367-394 (582)
372 1zak_A Adenylate kinase; ATP:A 89.6 0.17 5.8E-06 51.8 3.1 24 469-492 4-27 (222)
373 2x8a_A Nuclear valosin-contain 89.6 0.12 4.1E-06 55.7 2.1 21 473-493 47-67 (274)
374 2npi_A Protein CLP1; CLP1-PCF1 89.6 0.14 4.6E-06 59.7 2.7 27 469-495 137-163 (460)
375 1zd8_A GTP:AMP phosphotransfer 89.5 0.18 6.3E-06 51.8 3.3 24 469-492 6-29 (227)
376 1cr0_A DNA primase/helicase; R 89.2 0.18 6.1E-06 54.0 3.1 27 467-493 32-58 (296)
377 2obl_A ESCN; ATPase, hydrolase 89.1 0.15 5.2E-06 57.1 2.6 28 467-494 68-95 (347)
378 1e4v_A Adenylate kinase; trans 89.1 0.2 6.8E-06 51.1 3.2 22 471-492 1-22 (214)
379 4a82_A Cystic fibrosis transme 89.0 0.14 4.7E-06 60.9 2.2 27 469-495 366-392 (578)
380 2pez_A Bifunctional 3'-phospho 89.0 0.18 6E-06 49.8 2.6 25 469-493 4-28 (179)
381 1xwi_A SKD1 protein; VPS4B, AA 88.9 0.75 2.6E-05 50.5 7.8 26 468-493 43-68 (322)
382 2p65_A Hypothetical protein PF 88.9 0.34 1.2E-05 46.7 4.5 24 470-493 43-66 (187)
383 2cvh_A DNA repair and recombin 88.9 0.2 6.7E-06 50.4 2.9 26 467-492 17-42 (220)
384 2bwj_A Adenylate kinase 5; pho 88.8 0.23 7.8E-06 49.2 3.3 23 470-492 12-34 (199)
385 3qf4_A ABC transporter, ATP-bi 88.8 0.16 5.5E-06 60.5 2.6 27 469-495 368-394 (587)
386 2yvu_A Probable adenylyl-sulfa 88.7 0.23 8E-06 49.3 3.3 26 468-493 11-36 (186)
387 1uf9_A TT1252 protein; P-loop, 88.7 0.24 8.3E-06 49.2 3.4 25 469-493 7-31 (203)
388 1zcb_A G alpha I/13; GTP-bindi 88.7 0.53 1.8E-05 53.2 6.5 85 505-601 188-281 (362)
389 1cip_A Protein (guanine nucleo 88.6 0.23 8E-06 55.8 3.6 85 505-601 180-273 (353)
390 2zan_A Vacuolar protein sortin 88.6 2.9 0.0001 48.0 12.7 26 468-493 165-190 (444)
391 1iy2_A ATP-dependent metallopr 88.5 0.16 5.6E-06 53.9 2.2 21 473-493 76-96 (278)
392 2dpy_A FLII, flagellum-specifi 88.5 0.2 6.8E-06 58.0 3.0 28 467-494 154-181 (438)
393 3b9p_A CG5977-PA, isoform A; A 88.5 0.94 3.2E-05 48.1 8.0 25 469-493 53-77 (297)
394 3tqc_A Pantothenate kinase; bi 88.4 0.19 6.6E-06 56.0 2.7 27 467-493 89-115 (321)
395 3iij_A Coilin-interacting nucl 88.4 0.23 7.9E-06 48.9 3.1 24 469-492 10-33 (180)
396 3ozx_A RNAse L inhibitor; ATP 88.2 0.25 8.4E-06 58.6 3.6 29 467-495 22-50 (538)
397 1in4_A RUVB, holliday junction 88.2 0.27 9.2E-06 54.1 3.6 23 471-493 52-74 (334)
398 3bk7_A ABC transporter ATP-bin 88.2 0.25 8.4E-06 59.5 3.6 30 466-495 113-142 (607)
399 3be4_A Adenylate kinase; malar 88.0 0.26 8.9E-06 50.5 3.2 23 470-492 5-27 (217)
400 2pt5_A Shikimate kinase, SK; a 88.0 0.25 8.7E-06 47.8 3.0 22 471-492 1-22 (168)
401 4f4c_A Multidrug resistance pr 88.0 0.18 6.1E-06 65.7 2.4 27 468-494 1103-1129(1321)
402 1n0w_A DNA repair protein RAD5 87.9 0.21 7.2E-06 51.0 2.4 27 467-493 21-47 (243)
403 1gtv_A TMK, thymidylate kinase 87.8 0.15 5.1E-06 51.3 1.2 22 472-493 2-23 (214)
404 1nij_A Hypothetical protein YJ 87.8 0.19 6.4E-06 55.3 2.1 23 472-494 6-28 (318)
405 1via_A Shikimate kinase; struc 87.8 0.23 7.9E-06 48.8 2.5 21 472-492 6-26 (175)
406 3j16_B RLI1P; ribosome recycli 87.7 0.32 1.1E-05 58.6 4.2 29 467-495 100-128 (608)
407 1qf9_A UMP/CMP kinase, protein 87.7 0.29 9.9E-06 47.9 3.2 23 470-492 6-28 (194)
408 1vht_A Dephospho-COA kinase; s 87.7 0.29 9.9E-06 49.8 3.3 23 470-492 4-26 (218)
409 1ukz_A Uridylate kinase; trans 87.6 0.3 1E-05 48.9 3.3 24 469-492 14-37 (203)
410 3bos_A Putative DNA replicatio 87.6 0.55 1.9E-05 47.3 5.2 24 469-492 51-74 (242)
411 2z0h_A DTMP kinase, thymidylat 87.5 0.28 9.7E-06 48.4 3.1 21 472-492 2-22 (197)
412 2pbr_A DTMP kinase, thymidylat 87.4 0.29 9.9E-06 48.1 3.0 21 472-492 2-22 (195)
413 2vli_A Antibiotic resistance p 87.4 0.24 8.1E-06 48.6 2.4 23 470-492 5-27 (183)
414 3ohm_A Guanine nucleotide-bind 87.2 0.65 2.2E-05 51.9 6.0 86 505-602 154-248 (327)
415 1m7g_A Adenylylsulfate kinase; 87.2 0.34 1.2E-05 49.4 3.4 26 468-493 23-48 (211)
416 1ak2_A Adenylate kinase isoenz 87.1 0.33 1.1E-05 50.3 3.4 24 469-492 15-38 (233)
417 2xb4_A Adenylate kinase; ATP-b 87.1 0.3 1E-05 50.4 3.0 22 471-492 1-22 (223)
418 2w58_A DNAI, primosome compone 87.0 0.7 2.4E-05 46.2 5.7 23 471-493 55-77 (202)
419 2ze6_A Isopentenyl transferase 87.0 0.28 9.5E-06 52.1 2.8 22 472-493 3-24 (253)
420 4fcw_A Chaperone protein CLPB; 87.0 0.68 2.3E-05 49.2 5.8 23 471-493 48-70 (311)
421 1lv7_A FTSH; alpha/beta domain 86.9 0.29 9.8E-06 51.2 2.8 25 469-493 44-68 (257)
422 4aby_A DNA repair protein RECN 86.7 0.13 4.4E-06 57.6 0.1 25 466-491 57-81 (415)
423 1yqt_A RNAse L inhibitor; ATP- 86.5 0.38 1.3E-05 56.9 3.9 29 468-496 310-338 (538)
424 3a4m_A L-seryl-tRNA(SEC) kinas 86.4 0.35 1.2E-05 51.3 3.2 23 470-492 4-26 (260)
425 3euj_A Chromosome partition pr 86.4 0.25 8.4E-06 58.1 2.2 24 471-494 30-53 (483)
426 2iyv_A Shikimate kinase, SK; t 86.3 0.32 1.1E-05 48.0 2.6 22 471-492 3-24 (184)
427 3sr0_A Adenylate kinase; phosp 86.2 0.36 1.2E-05 50.2 3.1 23 471-493 1-23 (206)
428 3ozx_A RNAse L inhibitor; ATP 86.1 0.37 1.3E-05 57.2 3.5 29 467-495 291-319 (538)
429 1zcb_A G alpha I/13; GTP-bindi 86.1 0.36 1.2E-05 54.5 3.2 37 454-490 17-53 (362)
430 2chg_A Replication factor C sm 86.1 0.66 2.3E-05 45.5 4.8 21 472-492 40-60 (226)
431 4eaq_A DTMP kinase, thymidylat 85.9 0.41 1.4E-05 50.1 3.4 27 467-493 23-49 (229)
432 3cwq_A Para family chromosome 85.9 0.73 2.5E-05 47.2 5.2 109 472-600 2-132 (209)
433 1e6c_A Shikimate kinase; phosp 85.8 0.37 1.3E-05 46.7 2.7 21 472-492 4-24 (173)
434 1svm_A Large T antigen; AAA+ f 85.8 0.35 1.2E-05 55.0 2.9 26 467-492 166-191 (377)
435 1q3t_A Cytidylate kinase; nucl 85.4 0.47 1.6E-05 49.2 3.5 28 465-492 11-38 (236)
436 4f4c_A Multidrug resistance pr 85.4 0.4 1.4E-05 62.5 3.5 27 469-495 443-469 (1321)
437 1azs_C GS-alpha; complex (lyas 85.3 0.75 2.5E-05 52.9 5.4 85 505-601 204-297 (402)
438 3bk7_A ABC transporter ATP-bin 85.3 0.47 1.6E-05 57.1 3.9 28 468-495 380-407 (607)
439 3n70_A Transport activator; si 85.3 0.51 1.8E-05 45.4 3.4 25 469-493 23-47 (145)
440 3nwj_A ATSK2; P loop, shikimat 85.1 0.34 1.1E-05 52.0 2.3 23 470-492 48-70 (250)
441 3cf2_A TER ATPase, transitiona 84.7 2.3 7.9E-05 52.9 9.7 27 467-493 235-261 (806)
442 3r20_A Cytidylate kinase; stru 84.5 0.49 1.7E-05 50.5 3.2 24 469-492 8-31 (233)
443 1zuh_A Shikimate kinase; alpha 84.3 0.51 1.7E-05 45.9 3.0 21 472-492 9-29 (168)
444 3g5u_A MCG1178, multidrug resi 84.3 0.43 1.5E-05 62.1 3.1 27 469-495 415-441 (1284)
445 1f2t_A RAD50 ABC-ATPase; DNA d 84.2 0.49 1.7E-05 46.4 2.8 19 473-491 26-44 (149)
446 3pfi_A Holliday junction ATP-d 84.2 0.76 2.6E-05 49.7 4.6 24 470-493 55-78 (338)
447 3t15_A Ribulose bisphosphate c 84.0 0.59 2E-05 50.6 3.6 27 467-493 33-59 (293)
448 3co5_A Putative two-component 84.0 0.51 1.7E-05 45.4 2.8 24 470-493 27-50 (143)
449 2qmh_A HPR kinase/phosphorylas 83.8 0.71 2.4E-05 48.7 4.0 31 469-499 33-63 (205)
450 3cr8_A Sulfate adenylyltranfer 83.8 0.33 1.1E-05 57.9 1.6 27 467-493 366-392 (552)
451 1nlf_A Regulatory protein REPA 83.8 0.46 1.6E-05 50.6 2.6 26 467-492 27-52 (279)
452 1njg_A DNA polymerase III subu 83.7 0.51 1.7E-05 46.8 2.7 22 471-492 46-67 (250)
453 3syl_A Protein CBBX; photosynt 83.7 0.61 2.1E-05 49.6 3.5 25 468-492 65-89 (309)
454 2qby_A CDC6 homolog 1, cell di 83.5 0.92 3.1E-05 49.0 4.9 24 470-493 45-68 (386)
455 3cf0_A Transitional endoplasmi 83.4 0.62 2.1E-05 50.3 3.5 27 467-493 46-72 (301)
456 3d8b_A Fidgetin-like protein 1 83.3 1.6 5.5E-05 48.4 6.8 26 468-493 115-140 (357)
457 3vfd_A Spastin; ATPase, microt 83.1 1.6 5.5E-05 48.8 6.7 25 469-493 147-171 (389)
458 3uk6_A RUVB-like 2; hexameric 83.0 1.1 3.8E-05 48.8 5.3 23 470-492 70-92 (368)
459 3eie_A Vacuolar protein sortin 83.0 1.2 4.2E-05 48.4 5.6 26 468-493 49-74 (322)
460 3a8t_A Adenylate isopentenyltr 82.9 0.78 2.7E-05 51.7 4.1 56 471-528 41-105 (339)
461 2f6r_A COA synthase, bifunctio 82.9 0.66 2.3E-05 50.0 3.4 23 469-491 74-96 (281)
462 1uj2_A Uridine-cytidine kinase 82.9 0.64 2.2E-05 48.8 3.2 24 469-492 21-44 (252)
463 1ltq_A Polynucleotide kinase; 82.8 0.61 2.1E-05 49.7 3.1 22 471-492 3-24 (301)
464 1qhl_A Protein (cell division 82.3 0.11 3.9E-06 55.0 -2.8 22 473-494 30-51 (227)
465 1xjc_A MOBB protein homolog; s 82.2 0.68 2.3E-05 47.1 3.0 23 471-493 5-27 (169)
466 1sxj_E Activator 1 40 kDa subu 82.0 0.77 2.6E-05 49.8 3.6 20 473-492 39-58 (354)
467 1qvr_A CLPB protein; coiled co 81.9 1 3.4E-05 56.0 4.9 23 471-493 192-214 (854)
468 2qgz_A Helicase loader, putati 81.9 1.3 4.3E-05 48.6 5.2 23 470-492 152-174 (308)
469 2dr3_A UPF0273 protein PH0284; 81.8 0.75 2.6E-05 46.9 3.2 25 467-491 20-44 (247)
470 3j16_B RLI1P; ribosome recycli 81.7 0.75 2.6E-05 55.4 3.6 25 471-495 379-403 (608)
471 3ux8_A Excinuclease ABC, A sub 81.5 0.48 1.6E-05 57.2 1.9 25 467-491 345-369 (670)
472 2iw3_A Elongation factor 3A; a 81.5 0.48 1.6E-05 60.1 1.9 29 467-495 696-724 (986)
473 3hws_A ATP-dependent CLP prote 81.4 1.3 4.3E-05 49.0 5.0 25 469-493 50-74 (363)
474 3umf_A Adenylate kinase; rossm 81.4 0.88 3E-05 47.9 3.6 28 466-493 25-52 (217)
475 2qby_B CDC6 homolog 3, cell di 81.1 1.6 5.6E-05 47.5 5.7 24 470-493 45-68 (384)
476 1hqc_A RUVB; extended AAA-ATPa 81.0 0.87 3E-05 48.7 3.5 23 470-492 38-60 (324)
477 1ofh_A ATP-dependent HSL prote 80.9 0.77 2.6E-05 48.5 3.0 24 469-492 49-72 (310)
478 3g5u_A MCG1178, multidrug resi 80.9 0.76 2.6E-05 59.8 3.5 27 469-495 1058-1084(1284)
479 3ake_A Cytidylate kinase; CMP 80.9 0.81 2.8E-05 45.5 3.0 21 472-492 4-24 (208)
480 2iw3_A Elongation factor 3A; a 80.3 0.64 2.2E-05 59.0 2.4 26 467-492 458-483 (986)
481 3qks_A DNA double-strand break 79.5 0.87 3E-05 46.7 2.8 20 472-491 25-44 (203)
482 2c9o_A RUVB-like 1; hexameric 79.3 1.6 5.5E-05 50.1 5.2 25 469-493 62-86 (456)
483 2grj_A Dephospho-COA kinase; T 79.2 0.96 3.3E-05 46.4 3.0 24 470-493 12-35 (192)
484 1l8q_A Chromosomal replication 79.2 0.88 3E-05 49.2 2.8 24 470-493 37-60 (324)
485 3crm_A TRNA delta(2)-isopenten 79.1 0.92 3.2E-05 50.7 3.0 23 471-493 6-28 (323)
486 4ag6_A VIRB4 ATPase, type IV s 78.9 0.92 3.2E-05 50.7 2.9 25 469-493 34-58 (392)
487 1e69_A Chromosome segregation 78.8 0.97 3.3E-05 49.4 3.0 23 468-491 23-45 (322)
488 2v1u_A Cell division control p 78.8 0.89 3E-05 49.2 2.7 25 469-493 43-67 (387)
489 1ko7_A HPR kinase/phosphatase; 78.8 1.1 3.8E-05 49.9 3.5 32 469-500 143-174 (314)
490 2bjv_A PSP operon transcriptio 78.7 1.2 4.1E-05 46.6 3.6 24 470-493 29-52 (265)
491 2ocp_A DGK, deoxyguanosine kin 78.7 1.1 3.9E-05 46.4 3.3 24 470-493 2-25 (241)
492 1p5z_B DCK, deoxycytidine kina 78.7 0.77 2.6E-05 48.4 2.1 26 468-493 22-47 (263)
493 3exa_A TRNA delta(2)-isopenten 78.5 0.93 3.2E-05 50.8 2.7 87 471-560 4-98 (322)
494 1pzn_A RAD51, DNA repair and r 78.4 0.88 3E-05 50.8 2.5 28 467-494 128-155 (349)
495 3te6_A Regulatory protein SIR3 78.1 1.4 5E-05 48.9 4.2 25 469-493 44-68 (318)
496 1bif_A 6-phosphofructo-2-kinas 78.0 1.1 3.7E-05 51.8 3.2 26 468-493 37-62 (469)
497 1tue_A Replication protein E1; 77.9 0.89 3E-05 48.2 2.2 22 471-492 59-80 (212)
498 1sxj_C Activator 1 40 kDa subu 77.8 0.86 2.9E-05 49.8 2.2 21 473-493 49-69 (340)
499 3foz_A TRNA delta(2)-isopenten 77.7 1 3.5E-05 50.4 2.7 24 471-494 11-34 (316)
500 3m6a_A ATP-dependent protease 77.7 0.95 3.2E-05 53.5 2.7 25 469-493 107-131 (543)
No 1
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.87 E-value=2.3e-22 Score=214.33 Aligned_cols=201 Identities=36% Similarity=0.574 Sum_probs=156.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..++|+|+|.+|+|||||+|+|++...+.++.+.+.|.........+++.++.||||||+.+... ......+.+.++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~---~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGY---VNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTE---ECHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCccc---chHHHHHHHHHH
Confidence 46899999999999999999999988777777634444466677788999999999999977542 334566667777
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCCCCCccHHHHHhhcHHHHHHHH
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQRI 628 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~~~p~sieefV~q~~~~LQelI 628 (1109)
+...++|++|||++++..+....+..+++.+...++...++++++|+||+|+.++++ ..+++|+.+....+++++
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~-----~~~e~~~~~~~~~l~~~i 186 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE-----LSYETFSSKRSDSLLKTI 186 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT-----CCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCC-----ccHHHHHHhhhHHHHHHH
Confidence 766679999999988876665556788999999999888889999999999865432 478899987778899999
Q ss_pred HHHhCCCceeccCCCCHHHHHhhHHHHHhccccceecCCCCCchhhhhH
Q 036930 629 SQAIGDPHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLL 677 (1109)
Q Consensus 629 ~qc~gr~~lfn~s~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~Lll 677 (1109)
.+|.+...+.......|+.++++.+.|..|..+..++|++..|...++.
T Consensus 187 ~~~~~~~~~~~~~~~~pv~~ve~~~~~~~n~~g~~~lp~~~~w~~~~~~ 235 (262)
T 3def_A 187 RAGSKMRKQEFEDSAIAVVYAENSGRCSKNDKDEKALPNGEAWIPNLVK 235 (262)
T ss_dssp HHHHTCCHHHHHHHCCEEEECCCCTTCCBCTTSCBBCTTSCBSCC-CHH
T ss_pred HHHhCccccccccccCCEEEEeCCCCCCCCCCCCeECCCCCeeHHHHHH
Confidence 9998765431111113445566677899998899999999999877654
No 2
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.84 E-value=2.8e-21 Score=224.61 Aligned_cols=287 Identities=14% Similarity=0.167 Sum_probs=169.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHhhh--
Q 036930 388 DVTKDKLSDEEKRKIEKIQILRVKFLRLVQRLGHS---FDDSVVAQVLYRLALALGGHSSQAVSIEAAKRVAEQHEIE-- 462 (1109)
Q Consensus 388 a~~~~Al~~e~g~l~~kLe~~RvkLLrLlarLgas---pEddlvaqVL~rl~~a~~~~~~~~~~le~a~~~a~qlla~-- 462 (1109)
.+++.|++++.|.+...++.||.+|+++++.+++. ||+++.......+.. .+..+...+.+++..
T Consensus 156 ~~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~----------~i~~l~~~l~~~~~~~~ 225 (476)
T 3gee_A 156 SAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTM----------QIETLRSEVNRLIDSYQ 225 (476)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999999999988 665432111111111 233444555554442
Q ss_pred cccccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHH
Q 036930 463 DKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 463 ~~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
.++.++.+++|+|+|.||||||||+|+|++.+.+.++.+ ++||+ +......++|.++.||||||+.+... ......
T Consensus 226 ~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~-~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~--~ve~~g 302 (476)
T 3gee_A 226 HGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHM-PGTTRDYIEECFIHDKTMFRLTDTAGLREAGE--EIEHEG 302 (476)
T ss_dssp HHHHHHHCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-----------------
T ss_pred hhHhhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCceEEEEEEEEEECCeEEEEEECCCCCcchh--HHHHHH
Confidence 345677889999999999999999999999987778886 77777 66677888999999999999976431 111111
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcH-HHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCCCCCccHHH-----
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDL-PLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSYEV----- 615 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~-~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~~~p~siee----- 615 (1109)
++....++ ..+|++|||++.+...... .. .....+.. +. ..|+|+|+||+|+........ ..+..
T Consensus 303 i~~~~~~~--~~aD~vl~VvD~s~~~s~~-~~~~~~~~l~~-l~---~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~ 373 (476)
T 3gee_A 303 IRRSRMKM--AEADLILYLLDLGTERLDD-ELTEIRELKAA-HP---AAKFLTVANKLDRAANADALI--RAIADGTGTE 373 (476)
T ss_dssp -----CCC--SSCSEEEEEEETTTCSSGG-GHHHHHHHHHH-CT---TSEEEEEEECTTSCTTTHHHH--HHHHHHHTSC
T ss_pred HHHHHhhc--ccCCEEEEEEECCCCcchh-hhHHHHHHHHh-cC---CCCEEEEEECcCCCCccchhH--HHHHhcCCCc
Confidence 11111222 3589999998877533211 11 22222322 22 479999999999865321100 00111
Q ss_pred HH------hhcHHHHHHHHHHHhC-CC-----ceeccCCCCHHHHHhhHHHHHhccccceecCCCCCchhhhhHHHHHHH
Q 036930 616 FV------GQQSHAIQQRISQAIG-DP-----HLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLK 683 (1109)
Q Consensus 616 fV------~q~~~~LQelI~qc~g-r~-----~lfn~s~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~LllLcya~k 683 (1109)
++ +.+.+.|.+.|.++.. .. ..+..+.||...+..+...+... ...+..+.++++...+|+++..
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~---~~~l~~~~~~dl~a~~lr~a~~ 450 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLVKNLDKLHEASVLVTSLRHYEALRNASDALQNA---LELIAHESETELIAFELRAALD 450 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHHHSSCCCCTTSCCCCSHHHHHHHHHHHHHHHHH---HTTTTTTCCSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHhhccCCCCcccccccHHHHHHHHHHHHHHHHH---HHHHHcCCCHHHHHHHHHHHHH
Confidence 11 3456666666655543 11 12445566777787777666642 2224456677899999999999
Q ss_pred HHHHhhccccccCCCC
Q 036930 684 ILSEANSVSKSQGPAP 699 (1109)
Q Consensus 684 ~L~Ea~g~lk~qe~l~ 699 (1109)
.|++++|....++.++
T Consensus 451 ~Lg~itG~~~~edlL~ 466 (476)
T 3gee_A 451 YVGQITGKVVNEEVLN 466 (476)
T ss_dssp HHHHHHTSSCCSSHHH
T ss_pred HHHHHhCCCCcHHHHH
Confidence 9999999998888776
No 3
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.83 E-value=1.8e-20 Score=200.16 Aligned_cols=199 Identities=40% Similarity=0.615 Sum_probs=145.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
...++|+|+|.+|+|||||+|+|++...+.++...+.|..+........+..+.||||||+.+... ......+.+.+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~---~~~~~~~~i~~ 113 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY---INDMALNIIKS 113 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE---ECHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc---chHHHHHHHHH
Confidence 346899999999999999999999988777777533333455666778899999999999977542 22334455555
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCCCCCccHHHHHhhcHHHHHHH
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQQR 627 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~~~p~sieefV~q~~~~LQel 627 (1109)
++...++|++|||++++..++...+..+++.+...|+...+.|+|+|+||+|+.++++ .++++|+.+....|++.
T Consensus 114 ~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~-----~~~~~~~~~~~~~l~~~ 188 (270)
T 1h65_A 114 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG-----LPYDEFFSKRSEALLQV 188 (270)
T ss_dssp HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG-----CCHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC-----CCHHHHHHHHHHHHHHH
Confidence 5554568999999888865565556788899998888777789999999999876443 36889987777788888
Q ss_pred HHHHhCCCceeccCCCCHHHHHhhHHHHHhccccceecCCCCCchhhh
Q 036930 628 ISQAIGDPHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQL 675 (1109)
Q Consensus 628 I~qc~gr~~lfn~s~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~L 675 (1109)
+.+..+....+. ....|..++++...|..+..+..+++++.+|-..|
T Consensus 189 ~~~~~~~~~~~~-~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~L 235 (270)
T 1h65_A 189 VRSGASLKKDAQ-ASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHL 235 (270)
T ss_dssp HHHHTTCCTTSG-GGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHH
T ss_pred HHHhhhhhhhhh-hccCCEEEEeCCCcccccCCCceECCCCCCcHHHH
Confidence 766444323222 11135555665555666666778999999997643
No 4
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.81 E-value=5.5e-20 Score=192.03 Aligned_cols=201 Identities=18% Similarity=0.225 Sum_probs=119.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcch-hhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGR-TVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~-~~~eeIl~~I 545 (1109)
...++|+|+|++|||||||+|+|+|...+..+....++|. +......+++.++.||||||+.+..... ...+.+.+.+
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~ 106 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI 106 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999999887544332124444 6777788999999999999998865322 1222333333
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCCCCCccHHHHHhhcHHHHH
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSYEVFVGQQSHAIQ 625 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~~~p~sieefV~q~~~~LQ 625 (1109)
..+. .++|++|+|++++. .+..+...++.+.+.|+...++|+++|+||+|.+... .+++|+......++
T Consensus 107 ~~~~--~~~~~~l~v~d~~~--~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~-------~~~~~i~~~~~~l~ 175 (239)
T 3lxx_A 107 LLTS--PGPHALLLVVPLGR--YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT-------NLHDYLREAPEDIQ 175 (239)
T ss_dssp HHTT--TCCSEEEEEEETTC--CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-------------------CHHHH
T ss_pred HhcC--CCCcEEEEEeeCCC--CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcc-------cHHHHHHhchHHHH
Confidence 3222 36899999988764 3345678888888888766678999999999986532 45667755556799
Q ss_pred HHHHHHhCCCceeccCCCC---HHHHHhhHHHHHhccccceecCCCCCchhhhhHHHHHHHHHHHhhccc
Q 036930 626 QRISQAIGDPHLMNLNMMH---PVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKILSEANSVS 692 (1109)
Q Consensus 626 elI~qc~gr~~lfn~s~r~---pv~LvEn~~l~~kn~ig~~VLpng~~W~~~LllLcya~k~L~Ea~g~l 692 (1109)
+++.+|.++|+.|++.... ...+.+. +.+ +..++..+++. +|...++.++...+
T Consensus 176 ~l~~~~~~~~~~~~~~~~~~~~~~~v~~l---l~~--i~~~~~~~~g~--------~~~~~~~~~~e~~~ 232 (239)
T 3lxx_A 176 DLMDIFGDRYCALNNKATGAEQEAQRAQL---LGL--IQRVVRENKEG--------CYTNRMYQRAEEEI 232 (239)
T ss_dssp HHHHHHSSSEEECCTTCCHHHHHHHHHHH---HHH--HHHHHHHCTTS--------CC------------
T ss_pred HHHHHcCCEEEEEECCCCccccHHHHHHH---HHH--HHHHHHHcCCC--------CCcHHHHHHHHHHH
Confidence 9999999999988776432 2344443 332 22344445544 56666666655443
No 5
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.80 E-value=9.3e-21 Score=219.48 Aligned_cols=285 Identities=15% Similarity=0.170 Sum_probs=178.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHhhh--
Q 036930 388 DVTKDKLSDEEKRKIEKIQILRVKFLRLVQRLGHS---FDDSVVAQVLYRLALALGGHSSQAVSIEAAKRVAEQHEIE-- 462 (1109)
Q Consensus 388 a~~~~Al~~e~g~l~~kLe~~RvkLLrLlarLgas---pEddlvaqVL~rl~~a~~~~~~~~~~le~a~~~a~qlla~-- 462 (1109)
.+++.|++++.|.+...++.||.+|+.+++.+++. |+ ++.......+ ...+..+...+.+++..
T Consensus 148 ~~~~~a~~~l~g~~~~~~~~~r~~l~~~~a~iEa~iDf~e-d~~~~~~~~~----------~~~i~~l~~~l~~~~~~~~ 216 (462)
T 3geh_A 148 QAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEE-DLPPLDDEAI----------ISDIENIAAEISQLLATKD 216 (462)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTTSSS-SSCCCCTTTH----------HHHHHHHHHHHHHHTTTHH
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHhhccccc-cCChhhHHHH----------HHHHHHHHHHHHHHHHHhh
Confidence 67789999999999999999999999999887755 33 2110000001 11334455555555542
Q ss_pred cccccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHH
Q 036930 463 DKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 463 ~~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
.++.++.+++|+|+|+||||||||+|+|++.+.+.++.+ ++||+ +......++|.++.||||||+.++... .....
T Consensus 217 ~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~-~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~--ve~~g 293 (462)
T 3geh_A 217 KGELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDL-PGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQ--VEKIG 293 (462)
T ss_dssp HHHHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCC-TTCCHHHHHHEEEETTEEEEECC-----------------
T ss_pred hhhhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCC-CCeeEEEEEEEEEECCEEEEEEECCccccchhH--HHHHH
Confidence 345677889999999999999999999999877777776 77776 555566789999999999999764311 11111
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCC-------CCC-ccH
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPS-------GLP-LSY 613 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~-------~~p-~si 613 (1109)
++....++ ..+|++|+|++.+.. ....+..+++.+. .+|+|+|+||+|+....... ..+ ...
T Consensus 294 i~~~~~~~--~~aD~vl~VvD~s~~-~~~~~~~i~~~l~-------~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~i 363 (462)
T 3geh_A 294 VERSRQAA--NTADLVLLTIDAATG-WTTGDQEIYEQVK-------HRPLILVMNKIDLVEKQLITSLEYPENITQIVHT 363 (462)
T ss_dssp -----CCC--CSCSEEEEEEETTTC-SCHHHHHHHHHHT-------TSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEE
T ss_pred HHHHhhhh--hcCCEEEEEeccCCC-CCHHHHHHHHhcc-------CCcEEEEEECCCCCcchhhHHHHHhccCCcEEEE
Confidence 11111122 258999999877652 2222333444332 26999999999986533211 000 000
Q ss_pred HHHHhhcHHHHHHHHHHHhCCCc------eeccCCCCHHHHHhhHHHHHhccccceecCCCCCchhhhhHHHHHHHHHHH
Q 036930 614 EVFVGQQSHAIQQRISQAIGDPH------LMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKILSE 687 (1109)
Q Consensus 614 eefV~q~~~~LQelI~qc~gr~~------lfn~s~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~LllLcya~k~L~E 687 (1109)
....+.+.+.|.+.|.+...... .+..+.||...+..+...+... ...+..+.++++...+|+.+...|++
T Consensus 364 SAktg~Gi~eL~~~i~~~~~~~~~~~~~~~~~~~~R~~~~L~~a~~~L~~~---~~~l~~~~~~dl~a~~Lr~a~~~l~~ 440 (462)
T 3geh_A 364 AAAQKQGIDSLETAILEIVQTGKVQAADMDLAINQRQAAALTQAKMSLEQV---QATITQQLPLDFWTIDLRGAIQALGE 440 (462)
T ss_dssp BTTTTBSHHHHHHHHHHHHTTSSSSSCCSSCCCCHHHHHHHHHHHHHHHHH---HHHTTTTCCGGGTHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhccCCCCcccceechHHHHHHHHHHHHHHHHH---HHHHhcCCCHHHHHHHHHHHHHHHhH
Confidence 11114456667776666554322 2345566777777777666642 22244566778999999999999999
Q ss_pred hhccccccCCCC
Q 036930 688 ANSVSKSQGPAP 699 (1109)
Q Consensus 688 a~g~lk~qe~l~ 699 (1109)
++|....++.++
T Consensus 441 itg~~~~e~~l~ 452 (462)
T 3geh_A 441 ITGEEVTESVLD 452 (462)
T ss_dssp HHTSSCCHHHHH
T ss_pred hhCCCchHHHHH
Confidence 999988887766
No 6
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.78 E-value=7.8e-19 Score=186.25 Aligned_cols=199 Identities=16% Similarity=0.199 Sum_probs=134.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcch--hhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGR--TVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~--~~~eeIl~~ 544 (1109)
...++|+|+|+||||||||+|+|+|...+.+.....+||+ +......+++.++.||||||+.+..... .....+.++
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 3468999999999999999999999988766543234554 7777888999999999999998754211 122233333
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCC-CeEEEEEeccCCCCCCCCCCCCccHHHHHhhc-HH
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVW-QNAILCLTHAASEPPDGPSGLPLSYEVFVGQQ-SH 622 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~-k~vIVVLTKaD~l~pd~~~~~p~sieefV~q~-~~ 622 (1109)
+.. ...++|++|+|++++. +...+..+++.+.+.||...+ .++|+|.||+|+.. .++++++... ..
T Consensus 99 ~~~--~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~--------~~~~~~l~~~~~~ 166 (247)
T 3lxw_A 99 YLL--SAPGPHALLLVTQLGR--FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG--------GSLHDYVSNTENR 166 (247)
T ss_dssp HHH--HTTCCSEEEEEEETTB--CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT--------CCHHHHHHHCCCH
T ss_pred HHh--cCCCCCEEEEEEeCCC--CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC--------CCHHHHHhhcccH
Confidence 322 2246999999988764 445577889999999987654 56778888888742 2577888543 36
Q ss_pred HHHHHHHHHhCCCceeccCCCC---HHHHHhhHHHHHhccccceecCCCCCchhhhhHHHHHHHHHHHhhcc
Q 036930 623 AIQQRISQAIGDPHLMNLNMMH---PVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKILSEANSV 691 (1109)
Q Consensus 623 ~LQelI~qc~gr~~lfn~s~r~---pv~LvEn~~l~~kn~ig~~VLpng~~W~~~LllLcya~k~L~Ea~g~ 691 (1109)
.|++++.+|+++|+.|++.... ...+.+. +.+ +..++..++.. +|+..++.++..+
T Consensus 167 ~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~L---l~~--i~~~~~~~~~~--------~y~~~~~~~~~~~ 225 (247)
T 3lxw_A 167 ALRELVAECGGRVCAFDNRATGREQEAQVEQL---LGM--VEGLVLEHKGA--------HYSNEVYELAQVL 225 (247)
T ss_dssp HHHHHHHHTTTCEEECCTTCCHHHHHHHHHHH---HHH--HHHHHHHTTTC--------CCCCHHHHHHHHG
T ss_pred HHHHHHHHcCCeEEEEeCCCCccccHHHHHHH---HHH--HHHHHHHcCCC--------CCCHHHHHHHHHh
Confidence 7999999999999999876532 2444443 332 23444445554 6777777766543
No 7
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.76 E-value=1e-18 Score=203.55 Aligned_cols=278 Identities=17% Similarity=0.206 Sum_probs=182.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHHhhCCCCchhhhHHHHHHHHHHHhh--h
Q 036930 388 DVTKDKLSDEEKRKIEKIQILRVKFLRLVQRLGHS---FDDSVVAQVLYRLALALGGHSSQAVSIEAAKRVAEQHEI--E 462 (1109)
Q Consensus 388 a~~~~Al~~e~g~l~~kLe~~RvkLLrLlarLgas---pEddlvaqVL~rl~~a~~~~~~~~~~le~a~~~a~qlla--~ 462 (1109)
.+.+.+++++.+.+...++.||..|+++++.+++. |++ + ..+..++. ..+..++.++..++. .
T Consensus 168 ~~~~~a~~~l~g~l~~~~~~~r~~l~~~~~~ie~~idf~ee-i-~~~~~~i~----------~~~~~l~~eL~~l~~~~~ 235 (482)
T 1xzp_A 168 TSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDE-I-ETNTGEVV----------TRLERIKEKLTEELKKAD 235 (482)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHSTTT-C-CCCHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhHhHHHHHHHHHHHHHHHHhhhcCCCCcc-c-cchHHHHH----------HHHHHHHHHHHHHHHhhh
Confidence 46678999999999999999999999999887765 443 1 10111111 123344455544443 2
Q ss_pred cccccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCC-CCCcc--hhhh
Q 036930 463 DKDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLR-SPAIG--RTVN 538 (1109)
Q Consensus 463 ~~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~-ds~~~--~~~~ 538 (1109)
.++.++.+++|+|+|.||||||||+|+|++.+.+.++.+ ++||+ +......++|.++.||||||+. .+... ....
T Consensus 236 ~~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~-~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi 314 (482)
T 1xzp_A 236 AGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDI-PGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGI 314 (482)
T ss_dssp HHHHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCS-SCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCH
T ss_pred hhhhccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCC-CCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHH
Confidence 345567789999999999999999999999887778886 78777 6667778899999999999998 54311 1101
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCCCCCccHHHHH-
Q 036930 539 KKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPSGLPLSYEVFV- 617 (1109)
Q Consensus 539 eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~~~p~sieefV- 617 (1109)
..... ++. .+|++|+|++++... ..++..+++.+ . .+|+|+|+||+|+..... ...+..+.
T Consensus 315 ~~~~~----~~~--~aD~vl~VvD~s~~~-s~~~~~il~~l----~---~~piivV~NK~DL~~~~~----~~~~~~~~~ 376 (482)
T 1xzp_A 315 ERTLQ----EIE--KADIVLFVLDASSPL-DEEDRKILERI----K---NKRYLVVINKVDVVEKIN----EEEIKNKLG 376 (482)
T ss_dssp HHHHH----HHH--HCSEEEEEEETTSCC-CHHHHHHHHHH----T---TSSEEEEEEECSSCCCCC----HHHHHHHHT
T ss_pred HHHHH----Hhh--cccEEEEEecCCCCC-CHHHHHHHHHh----c---CCCEEEEEECcccccccC----HHHHHHHhc
Confidence 12222 233 289999998876432 22234444332 1 478999999999854211 00111111
Q ss_pred ------------hhcHHHHHHHHHHHhC-C----CceeccCCCCHHHHHhhHHHHHhccccceecCCCCCchhhhhHHHH
Q 036930 618 ------------GQQSHAIQQRISQAIG-D----PHLMNLNMMHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCF 680 (1109)
Q Consensus 618 ------------~q~~~~LQelI~qc~g-r----~~lfn~s~r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~LllLcy 680 (1109)
+++.+.|.+.|.+... . -..+..+.||...+.++...+... ...+..+.++++...+|+.
T Consensus 377 ~~~~~i~iSAktg~Gi~eL~~~l~~~~~~~~~~~~~~~~~~~R~~~~l~~a~~~L~~~---~~~l~~~~~~~l~a~~lr~ 453 (482)
T 1xzp_A 377 TDRHMVKISALKGEGLEKLEESIYRETQEIFERGSDSLITNLRQKQLLENVKGHLEDA---IKSLKEGMPVDMASIDLER 453 (482)
T ss_dssp CSTTEEEEEGGGTCCHHHHHHHHHHHTHHHHHHHTTCSCCSHHHHHHHHHHHHHHHHH---HHHHHTTCCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCcceEhhHHHHHHHHHHHHHHHHH---HHHHHcCCcHHHHHHHHHH
Confidence 2345555555554321 1 112445567777888777776642 2234556677999999999
Q ss_pred HHHHHHHhhccccccCCCC
Q 036930 681 SLKILSEANSVSKSQGPAP 699 (1109)
Q Consensus 681 a~k~L~Ea~g~lk~qe~l~ 699 (1109)
+...|++++|....++.++
T Consensus 454 a~~~L~~itG~~~~edlL~ 472 (482)
T 1xzp_A 454 ALNLLDEVTGRSFREDLLD 472 (482)
T ss_dssp HHHHHHHHHTSSCCHHHHH
T ss_pred HHHHHHHHHCCCChHHHHH
Confidence 9999999999987776655
No 8
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.60 E-value=8.7e-15 Score=154.37 Aligned_cols=158 Identities=22% Similarity=0.207 Sum_probs=111.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCc-eeE-EEEEEEEECCEEEEEEeCCCCCCCCcchh-hhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPA-TSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRT-VNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pg-TTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~-~~eeIl~~ 544 (1109)
...++|+|+|.+|||||||+|+|++...+.++.. +. ||+ +......+.+.++.||||||+.+...... ..+.+.+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLG-SQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTT-SCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCC-CCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999999887766543 33 454 66677788999999999999987653211 11233333
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEe-ccCCCCCCCCCCCCccHHHHHhh-cHH
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLT-HAASEPPDGPSGLPLSYEVFVGQ-QSH 622 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLT-KaD~l~pd~~~~~p~sieefV~q-~~~ 622 (1109)
+..++ .++|++|||++++. +...+..+++.+.+.|+.....+.|+|+| |+|+.. ..+..++.. ...
T Consensus 99 ~~~~~--~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~--------~~~~~~i~~~~~~ 166 (260)
T 2xtp_A 99 YLLSA--PGPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG--------GSLMDYMHDSDNK 166 (260)
T ss_dssp HHHHT--TCCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT--------CCHHHHHHHCCCH
T ss_pred HHhcC--CCCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC--------ccHHHHHHhcchH
Confidence 33333 36899999988774 44445667788888888766788999999 999852 135555532 225
Q ss_pred HHHHHHHHHhCCCcee
Q 036930 623 AIQQRISQAIGDPHLM 638 (1109)
Q Consensus 623 ~LQelI~qc~gr~~lf 638 (1109)
.+++++..|..+++.+
T Consensus 167 ~~~~~~~~~~~~~~~~ 182 (260)
T 2xtp_A 167 ALSKLVAACGGRICAF 182 (260)
T ss_dssp HHHHHHHHTTTCEEEC
T ss_pred HHHHHHHHhCCeEEEe
Confidence 5777888887766534
No 9
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.52 E-value=7.2e-14 Score=142.22 Aligned_cols=127 Identities=11% Similarity=0.101 Sum_probs=86.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCC-cceecCCCCceeE-EEEEEEE-ECCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEE-KSTINAFEPATSS-VKVIAGL-VHGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~-va~Vs~i~pgTTr-v~e~~~~-i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..++|+|+|.+|||||||+|+|++.. .+.++.. ++||+ +...... ..+.++.||||||+.+........+.+...+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKT-PGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCC-CCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCC-CCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 46899999999999999999999987 4456664 66665 4333333 4578999999999987653332233333334
Q ss_pred HHHHhc-CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKK-FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~-~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++.. ..+|++|||++... .....+..+++.+... ..|+++|+||+|+..
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARR-PLTELDRRMIEWFAPT-----GKPIHSLLTKCDKLT 158 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTS-CCCHHHHHHHHHHGGG-----CCCEEEEEECGGGSC
T ss_pred HHHHhcCcCcCEEEEEEeCCC-CCCHHHHHHHHHHHhc-----CCCEEEEEeccccCC
Confidence 444433 24788999987764 2333355566666542 479999999999864
No 10
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.49 E-value=5.1e-13 Score=146.36 Aligned_cols=125 Identities=18% Similarity=0.280 Sum_probs=92.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEEC-CEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVH-GVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~-G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
.....|+++|.+|||||||+|+|+|.....++.. ++||+ ......... +.+++||||||+.+........+.+....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~-~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPK-AGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSS-SCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCC-CCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 3457899999999999999999999988777775 77777 566666777 99999999999987542123445555555
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHH-HHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPL-LKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~l-Lk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..++.. +|++|+|++++.. ....+..+ ++.+.. ...|+++|+||+|+.
T Consensus 87 ~~~l~~--aD~il~VvD~~~~-~~~~~~~~~~~~l~~-----~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 87 KQSLEE--ADVILFMIDATEG-WRPRDEEIYQNFIKP-----LNKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHH--CSEEEEEEETTTB-SCHHHHHHHHHHTGG-----GCCCEEEEEECGGGS
T ss_pred HHHhhc--CCEEEEEEeCCCC-CCchhHHHHHHHHHh-----cCCCEEEEEECccCC
Confidence 556654 8999999887643 22224444 444443 247999999999986
No 11
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.47 E-value=2e-12 Score=141.81 Aligned_cols=124 Identities=20% Similarity=0.220 Sum_probs=89.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..+|+|+|+||||||||+|+|+|...+.++.. ++||+ ........++.++.||||||+.+... ...+.+......+
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~-~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~--~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPR-PQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD--ALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSS-SCCCCSCEEEEEEETTEEEEEEECCCCCCCCS--HHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCC-CCceeEEEEEEEEeCCcEEEEecCccccchhh--HHHHHHHHHHHHH
Confidence 35799999999999999999999988777764 77776 44555667899999999999987532 2333444444455
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+. .+|++|||++++.. ....+..+++.+...+ ...|+|+|+||+|+..
T Consensus 84 l~--~ad~il~VvD~~~~-~~~~~~~i~~~l~~~~---~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 84 LA--DVNAVVWVVDLRHP-PTPEDELVARALKPLV---GKVPILLVGNKLDAAK 131 (301)
T ss_dssp TS--SCSEEEEEEETTSC-CCHHHHHHHHHHGGGT---TTSCEEEEEECGGGCS
T ss_pred Hh--cCCEEEEEEECCCC-CChHHHHHHHHHHhhc---CCCCEEEEEECcccCC
Confidence 54 48999999887643 3333445555565442 1479999999999853
No 12
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.46 E-value=5.8e-13 Score=142.78 Aligned_cols=128 Identities=20% Similarity=0.293 Sum_probs=78.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecC------CCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINA------FEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNK 539 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~------i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~e 539 (1109)
..++|+|+|.+|+|||||+|+|++...+.... ..+.++ .........+| .+++||||||+++.........
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 45899999999999999999999988765542 012221 13333334455 4899999999987643222222
Q ss_pred HHH----HHHHHHHh-----------cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 540 KTL----ASIRKSIK-----------KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 540 eIl----~~Ikk~Lk-----------~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+. .....++. ..++|++||++..........+..+++.+.. ..|+|+|+||+|.+.
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~ 158 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 158 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSC
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCC
Confidence 332 11122222 2357899999766555555556666666544 489999999999864
No 13
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.42 E-value=1.7e-12 Score=128.80 Aligned_cols=125 Identities=18% Similarity=0.262 Sum_probs=85.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.+.+|+|+|++|||||||+|.|++.....++.. ++||+ .......+++.++.+|||||+..... ......+ .....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~-~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDI-AGTTRDVLREHIHIDGMPLHIIDTAGLREASD-EVERIGI-ERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-TTCCCSCEEEEEEETTEEEEEEECCCCSCCSS-HHHHHHH-HHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCC-CCceeceeeEEEEECCeEEEEEECCCcccchh-HHHHHHH-HHHHH
Confidence 468999999999999999999999875556664 66665 55566778899999999999976431 1111111 11112
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++. .+|++++|++++.... ..+..++..+..... ...|+|+|.||+|+.
T Consensus 80 ~~~--~ad~~i~v~D~~~~~s-~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~ 128 (172)
T 2gj8_A 80 EIE--QADRVLFMVDGTTTDA-VDPAEIWPEFIARLP--AKLPITVVRNKADIT 128 (172)
T ss_dssp HHH--TCSEEEEEEETTTCCC-CSHHHHCHHHHHHSC--TTCCEEEEEECHHHH
T ss_pred HHH--hCCEEEEEEECCCCCC-HHHHHHHHHHHHhcc--cCCCEEEEEECccCC
Confidence 233 4899999988764322 224556666665432 247899999999974
No 14
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.39 E-value=4.2e-12 Score=126.05 Aligned_cols=124 Identities=19% Similarity=0.238 Sum_probs=75.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCC-cceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEE-KSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~-va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|+|++.. ...+... +++|. +.. ..++ .++.||||||+.+..............+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~t~~~~~--~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSK-PGKTQTLNF--YIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC--------------CCEEE--EEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCC-CCceeeEEE--EEEC-CcEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 46899999999999999999999876 3344443 55554 322 2233 47999999998876543222233333333
Q ss_pred HHHhc-CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKK-FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~-~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++.. ..+|++++|++++.. ....+..+++++... ..|+++|+||+|+..
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~ 148 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHA-PSNDDVQMYEFLKYY-----GIPVIVIATKADKIP 148 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred HHHhhhhcCCEEEEEEECCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECcccCC
Confidence 34433 235999999877642 222244455666542 479999999999864
No 15
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.39 E-value=5.8e-12 Score=124.16 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=81.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..++|+|+|.+|||||||+|+|++.....+... +++|..... .. .+.++.+|||||+...................+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~t~~~~~-~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKT-PGKTRSINF-YL-VNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSS-CCCCCCEEE-EE-ETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCC-CCCccCeEE-EE-ECCcEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 457999999999999999999999885555554 555542211 11 245788999999876543322222222223333
Q ss_pred Hhc-CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKK-FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~-~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+.. ..+|++++|++.+.. ....+..+++++... ..|+++|+||+|+..
T Consensus 99 ~~~~~~~~~vi~v~d~~~~-~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIP-PQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVK 147 (195)
T ss_dssp HHHCTTEEEEEEEEETTSC-CCHHHHHHHHHHHHT-----TCCEEEEEECGGGSC
T ss_pred HhcCcCceEEEEEecCCCC-CCHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 332 246999999776542 222244556666553 479999999999864
No 16
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.37 E-value=1.9e-12 Score=148.19 Aligned_cols=119 Identities=21% Similarity=0.251 Sum_probs=76.5
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK 550 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk 550 (1109)
+|+|+|.||||||||+|.|++...+.+++. |+||+ .......++|.++.||||||+..... ......+......++.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~-~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~~~ 80 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDE-EGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ-DIISQKMKEVTLNMIR 80 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGG-GCCCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCC-CCCccceeeEEEEECCeEEEEEECCCcccccc-chHHHHHHHHHHHHHH
Confidence 799999999999999999999887778775 88877 55677788999999999999975321 1122334444444554
Q ss_pred cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCC
Q 036930 551 KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAAS 600 (1109)
Q Consensus 551 ~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~ 600 (1109)
.+|++|+|++... ..+..+..+.+++... .+|+++|+||+|+
T Consensus 81 --~ad~il~V~D~~~-~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~ 122 (439)
T 1mky_A 81 --EADLVLFVVDGKR-GITKEDESLADFLRKS-----TVDTILVANKAEN 122 (439)
T ss_dssp --TCSEEEEEEETTT-CCCHHHHHHHHHHHHH-----TCCEEEEEESCCS
T ss_pred --hCCEEEEEEECCC-CCCHHHHHHHHHHHHc-----CCCEEEEEeCCCC
Confidence 4899999987653 2333344555655543 4799999999996
No 17
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.35 E-value=2.9e-11 Score=124.86 Aligned_cols=127 Identities=19% Similarity=0.234 Sum_probs=80.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
...++|+|+|.+|||||||+|+|++... .+... ++||+ +......+.+..+.||||||+.+..... ........+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~-~~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~-~~~~~~~~~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANV-DVQSY-SFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFEN-RNTIEMTTIT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCE-EEECC------CEEEEEEEETTEEEEEEECTTTTTSCGGG-CCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC-ccCCC-CCcceeeeeeeeecCCCeEEEEECCCCcCcccch-hhhHHHHHHH
Confidence 3468999999999999999999998764 35554 56665 5555666788999999999997643211 1111112232
Q ss_pred HHHhcCCCcEEEEEecCCCC-CCC-CCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTH-TRD-HNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~-t~d-~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+. ..+|++|||++++.. ++. ..+..++..+...+ ...|+++|+||+|+..
T Consensus 104 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 104 ALA--HINGVILFIIDISEQCGLTIKEQINLFYSIKSVF---SNKSIVIGFNKIDKCN 156 (228)
T ss_dssp HHH--TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC
T ss_pred Hhh--ccccEEEEEEecccccCcchHHHHHHHHHHHHhh---cCCcEEEEEeCcccCC
Confidence 322 247999999887653 222 11223444444332 2478999999999865
No 18
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.33 E-value=1.3e-11 Score=133.32 Aligned_cols=127 Identities=18% Similarity=0.229 Sum_probs=76.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCccee-----cCCCCc---eeEEE-------------------------------
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTI-----NAFEPA---TSSVK------------------------------- 509 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~V-----s~i~pg---TTrv~------------------------------- 509 (1109)
...+|+|+|.+|||||||+|+|+|...... +.. |+ |++..
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRR-PLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC---------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeee-eEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 456899999999999999999999876322 221 31 22100
Q ss_pred ------EE------------E---EEECCEEEEEEeCCCCCCCCc---chhhhHHHHHHHHHHHhcCCCcEEEEEecCCC
Q 036930 510 ------VI------------A---GLVHGVKIRIFDTPGLRSPAI---GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDT 565 (1109)
Q Consensus 510 ------e~------------~---~~i~G~~VtLIDTPGL~ds~~---~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds 565 (1109)
.. . ....+.+++||||||+..... .......+......++.. +|++++|++...
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~iilvvd~~~ 179 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK--QNAIIVAVTPAN 179 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHS--TTEEEEEEEESS
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcC--CCeEEEEEEecC
Confidence 00 0 111356899999999976321 011233444555556654 898888877643
Q ss_pred CCCCCCc-HHHHHHHHhhhCCCCCCeEEEEEeccCCCCC
Q 036930 566 HTRDHND-LPLLKSLTSSLGSSVWQNAILCLTHAASEPP 603 (1109)
Q Consensus 566 ~t~d~eD-~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~p 603 (1109)
......+ ..+++.+.. ...++++|+||+|+..+
T Consensus 180 ~~~~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~ 213 (315)
T 1jwy_B 180 TDLANSDALQLAKEVDP-----EGKRTIGVITKLDLMDK 213 (315)
T ss_dssp SCSTTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCS
T ss_pred cchhhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCc
Confidence 3333233 355555432 24799999999998753
No 19
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.33 E-value=6.7e-12 Score=120.04 Aligned_cols=120 Identities=19% Similarity=0.278 Sum_probs=76.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
.+|+|+|.+|||||||+|+|++.....+... +++|. .......+++.++.+|||||...... ...........++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADV-PGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETTEEEEEEECGGGCSSSS---CCHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCC-CCceecceEEEEEeCCceEEEEECCCCCCccc---hHHHHHHHHHHHH
Confidence 4899999999999999999998775445554 55554 55566677899999999999876431 1222333333334
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
. .+|+++||++.+.. ....+..+.+.+... ..|+++|.||+|+..
T Consensus 78 ~--~~~~~i~v~d~~~~-~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 78 E--DAEVVLFAVDGRAE-LTQADYEVAEYLRRK-----GKPVILVATKVDDPK 122 (161)
T ss_dssp T--TCSEEEEEEESSSC-CCHHHHHHHHHHHHH-----TCCEEEEEECCCSGG
T ss_pred H--hCCEEEEEEECCCc-ccHhHHHHHHHHHhc-----CCCEEEEEECccccc
Confidence 3 48999999877652 222233445555442 478999999999854
No 20
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.32 E-value=9.9e-12 Score=142.93 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHhhhc--ccccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEe
Q 036930 448 SIEAAKRVAEQHEIED--KDDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFD 524 (1109)
Q Consensus 448 ~le~a~~~a~qlla~~--~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLID 524 (1109)
.+..+...+.+.+... .......++|+++|.+|||||||+|+|++...+.++.. ++||+ .......+++.++.|||
T Consensus 171 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~-~gtt~~~~~~~~~~~~~~~~l~D 249 (456)
T 4dcu_A 171 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV-AGTTRDAVDTSFTYNQQEFVIVD 249 (456)
T ss_dssp THHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEETTEEEEETT
T ss_pred chHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCC-CCeEEEEEEEEEEECCceEEEEE
Confidence 3445555554444321 12234678999999999999999999999988888886 77776 44556678999999999
Q ss_pred CCCCCCCCcch--hhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 525 TPGLRSPAIGR--TVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 525 TPGL~ds~~~~--~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
|||++...... ......+..+ .++.. +|++|+|++... .....+..++..+.+. .+++|+|+||+|+..
T Consensus 250 T~G~~~~~~~~~~~e~~~~~~~~-~~~~~--ad~~llviD~~~-~~~~~~~~~~~~~~~~-----~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 250 TAGMRKKGKVYETTEKYSVLRAL-KAIDR--SEVVAVVLDGEE-GIIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVD 320 (456)
T ss_dssp GGGTTTBTTBCCCCSHHHHHHHH-HHHHH--CSEEEEEEETTT-CCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSC
T ss_pred CCCCCcCcccchHHHHHHHHHHH-HHHhh--CCEEEEEEeCCC-CcCHHHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 99997643111 1111222222 23333 799999977664 2333456666666552 489999999999865
No 21
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.32 E-value=4.9e-12 Score=136.29 Aligned_cols=120 Identities=17% Similarity=0.171 Sum_probs=84.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcc---hhhhHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIG---RTVNKKTLASI 545 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~---~~~~eeIl~~I 545 (1109)
.++|+|+|.+|||||||+|+|+|.. +.++.+ ++||. .......+.+.++.||||||+.+.... ....+.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~-~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~--- 77 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNW-AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA--- 77 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEEC-TTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHH---
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCC-CCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHH---
Confidence 4799999999999999999999987 577776 66554 566667778899999999999774310 11122222
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+.++....+|++++|++.+... ....++..+.+. ..|+|+|+||+|+..
T Consensus 78 ~~~~~~~~~d~ii~VvD~~~~~---~~~~~~~~l~~~-----~~p~ivv~NK~Dl~~ 126 (274)
T 3i8s_A 78 CHYILSGDADLLINVVDASNLE---RNLYLTLQLLEL-----GIPCIVALNMLDIAE 126 (274)
T ss_dssp HHHHHHTCCSEEEEEEEGGGHH---HHHHHHHHHHHH-----TCCEEEEEECHHHHH
T ss_pred HHHHhhcCCCEEEEEecCCChH---HHHHHHHHHHhc-----CCCEEEEEECccchh
Confidence 2233224699999997765421 134455555554 479999999999754
No 22
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.32 E-value=5.2e-12 Score=144.43 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHhhhcc--cccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEe
Q 036930 448 SIEAAKRVAEQHEIEDK--DDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFD 524 (1109)
Q Consensus 448 ~le~a~~~a~qlla~~~--e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLID 524 (1109)
.+..+...+...+.... ..-...++|+|+|.+|||||||+|+|++.....++.. ++||+ .......++|.++.|||
T Consensus 151 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~-~gtT~d~~~~~~~~~~~~~~l~D 229 (436)
T 2hjg_A 151 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNV-AGTTRDAVDTSFTYNQQEFVIVD 229 (436)
T ss_dssp THHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTEEEEETT
T ss_pred ChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCC-CCceeeeeEEEEEECCeEEEEEE
Confidence 34455555544443211 1123468999999999999999999999987778876 77776 55667778999999999
Q ss_pred CCCCCCCCcch--hhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 525 TPGLRSPAIGR--TVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 525 TPGL~ds~~~~--~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
|||+++..... ......++.+ .++.. +|++|+|++++.. ....+..++..+... .+++|+|+||+|+..
T Consensus 230 T~G~~~~~~~~~~~e~~~~~~~~-~~~~~--ad~~llv~D~~~~-~s~~~~~~~~~~~~~-----~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 230 TAGMRKKGKVYETTEKYSVLRAL-KAIDR--SEVVAVVLDGEEG-IIEQDKRIAGYAHEA-----GKAVVIVVNKWDAVD 300 (436)
T ss_dssp HHHHTCBTTBCCCCSHHHHHHHH-HHHHH--CSEEEEEEETTTC-CCHHHHHHHHHHHHT-----TCEEEEEEECGGGSC
T ss_pred CCCcCcCccccchHHHHHHHHHH-HHHHh--CCEEEEEEcCCcC-CcHHHHHHHHHHHHc-----CCcEEEEEECccCCC
Confidence 99997643210 1111122222 23333 8999999887642 223345555555432 489999999999865
No 23
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.29 E-value=8e-12 Score=133.82 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=82.3
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcch---hhhHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGR---TVNKKTLASIR 546 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~---~~~eeIl~~Ik 546 (1109)
.+|+|+|.+|||||||+|+|+|.. +.++.+ |++|. .......+++..+.||||||+....... ...+.+. +
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~-pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~---~ 76 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNW-PGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIA---A 76 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEEC-TTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHH---H
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCC-CCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHH---H
Confidence 379999999999999999999986 567776 66654 6677778899999999999997643210 1222222 2
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++....+|++++|++.+... ....+...+.+. ..|+++|+||+|+..
T Consensus 77 ~~~~~~~~d~vi~VvDas~~~---~~~~l~~~l~~~-----~~pvilv~NK~Dl~~ 124 (256)
T 3iby_A 77 QSVIDLEYDCIINVIDACHLE---RHLYLTSQLFEL-----GKPVVVALNMMDIAE 124 (256)
T ss_dssp HHHHHSCCSEEEEEEEGGGHH---HHHHHHHHHTTS-----CSCEEEEEECHHHHH
T ss_pred HHHhhCCCCEEEEEeeCCCch---hHHHHHHHHHHc-----CCCEEEEEEChhcCC
Confidence 233224699999997765421 123333443332 479999999999864
No 24
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.29 E-value=2.5e-11 Score=136.80 Aligned_cols=145 Identities=17% Similarity=0.100 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhh----cccccCCCcE-EEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEE
Q 036930 450 EAAKRVAEQHEIE----DKDDMDFSLN-ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIF 523 (1109)
Q Consensus 450 e~a~~~a~qlla~----~~e~L~~gLr-IaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLI 523 (1109)
..+...+.++... +....+.+++ |+|+|+||||||||+|+|++... .+... ++||+ +......++|.++.++
T Consensus 154 ~~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~-~~~T~d~~~~~i~~~g~~v~l~ 231 (364)
T 2qtf_A 154 NKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTK-LFTTMSPKRYAIPINNRKIMLV 231 (364)
T ss_dssp HHHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCc-cccCC-cccccCCEEEEEEECCEEEEEE
Confidence 3444555444431 2234456677 89999999999999999999874 55554 56665 5556677889999999
Q ss_pred eCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCC--CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 524 DTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHT--RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 524 DTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t--~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
||||+..... ....+.+ +.....+. .+|++++|++++... .. .....+..+...++. ...++|+|+||+|+.
T Consensus 232 DT~G~i~~lp-~~lve~f-~~tl~~~~--~aD~il~VvD~s~~~~~~~-~~~~~~~~~L~~l~~-~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 232 DTVGFIRGIP-PQIVDAF-FVTLSEAK--YSDALILVIDSTFSENLLI-ETLQSSFEILREIGV-SGKPILVTLNKIDKI 305 (364)
T ss_dssp ECCCBCSSCC-GGGHHHH-HHHHHGGG--GSSEEEEEEETTSCHHHHH-HHHHHHHHHHHHHTC-CSCCEEEEEECGGGC
T ss_pred eCCCchhcCC-HHHHHHH-HHHHHHHH--hCCEEEEEEECCCCcchHH-HHHHHHHHHHHHhCc-CCCCEEEEEECCCCC
Confidence 9999754211 1111222 22222333 489999997765422 11 111112222233332 246899999999986
Q ss_pred C
Q 036930 602 P 602 (1109)
Q Consensus 602 ~ 602 (1109)
.
T Consensus 306 ~ 306 (364)
T 2qtf_A 306 N 306 (364)
T ss_dssp C
T ss_pred C
Confidence 4
No 25
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.28 E-value=1.7e-11 Score=139.19 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=83.3
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcch-hhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGR-TVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~-~~~eeIl~~Ikk~ 548 (1109)
.+|+|||.||||||||+|+|++.. ..++++ |+||+ +......+.+.++.|+|||||....... ......+..++
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~-pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~-- 148 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE-SEAAEY-EFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR-- 148 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC-CCGGGT-CSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH--
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC-CcccCC-CCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH--
Confidence 489999999999999999999976 467887 77777 8888889999999999999998754221 22233443333
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC-CCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS-VWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~-v~k~vIVVLTKaD~l 601 (1109)
. +|++++|++....- .+..++..-...++.. ..+|.++|+||+|..
T Consensus 149 --~--ad~il~vvD~~~p~---~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 --T--CNLLFIILDVNKPL---HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp --H--CSEEEEEEETTSHH---HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred --h--cCccccccccCccH---HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 2 79999997665311 1333343322333322 246788999999963
No 26
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.27 E-value=3e-12 Score=146.46 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=71.6
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSI 549 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~L 549 (1109)
.+|+|+|++|||||||+|.|+|...+.+.+. +++|+ .......+++.++.||||||+...... ....+......++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~-~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~--~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDT-PGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP--FLAQIRQQAEIAM 80 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------C--HHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCC-CCCccceEEEEEEECCceEEEEECCCCCCcchh--HHHHHHHHHHHHH
Confidence 5899999999999999999999887777775 78776 555566678899999999999643211 2233434444445
Q ss_pred hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 550 KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 550 k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.. +|++|+|++... ..+..+..+.+.+.. ..+|+++|+||+|+..
T Consensus 81 ~~--ad~il~vvD~~~-~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 81 DE--ADVIIFMVNGRE-GVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 125 (436)
T ss_dssp HH--CSEEEEEEETTT-CSCHHHHHHHHHHTT-----CCSCEEEEEECCCC--
T ss_pred Hh--CCEEEEEEeCCC-CCCHHHHHHHHHHHH-----cCCCEEEEEECccCcc
Confidence 44 899999987654 223334444444432 2579999999999864
No 27
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.26 E-value=3.2e-12 Score=146.95 Aligned_cols=122 Identities=16% Similarity=0.215 Sum_probs=76.1
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..+|+|+|++|||||||+|.|+|...+.+.+. +++|+ .......+.+..+.||||||+.... ....+.+......+
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~-~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDT-PGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD--EPFLAQIRQQAEIA 99 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC--------CCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCC-CCcceeEEEEEEEECCceEEEEECCCCCCcc--hHHHHHHHHHHHhh
Confidence 35899999999999999999999887777775 77776 5555666788999999999997432 12334455555555
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+.. +|++|||++... .....+..+++.+.+ ..+|+|+|+||+|...
T Consensus 100 ~~~--ad~il~VvD~~~-~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 100 MDE--ADVIIFMVNGRE-GVTAADEEVAKILYR-----TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp HHH--CSEEEEEEESSS-CSCHHHHHHHHHHTT-----CCSCEEEEEECC----
T ss_pred Hhh--CCEEEEEEeCCC-CCChHHHHHHHHHHH-----cCCCEEEEEECccchh
Confidence 554 899999977543 333345555555543 3589999999999754
No 28
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.25 E-value=7e-11 Score=115.26 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=75.0
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHH
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTL 542 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl 542 (1109)
..+..++|+|+|.+|||||||+|+|++...... .+.+.++. .......+++. .+.||||||.....
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---------- 74 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAG-TFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR---------- 74 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCC-CCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------------
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH----------
Confidence 345678999999999999999999998764322 22233322 33334456664 78899999964321
Q ss_pred HHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 543 ASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 543 ~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.....++. .+|++++|++++....-..-..++..+..... ...|+++|+||+|+..
T Consensus 75 ~~~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 75 SVTHAYYR--DAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAH 130 (180)
T ss_dssp ----CCGG--GCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTS
T ss_pred HHHHHHcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCc
Confidence 11122233 38999999887653211112234455554432 2479999999999865
No 29
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.24 E-value=2.7e-11 Score=116.50 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=72.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCccee-cCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTI-NAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~V-s~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..++|+|+|.+|||||||+|+|++...... ......+++ .....++ ..+.+|||||..... .+ .
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~~~Dt~G~~~~~-------~~---~ 68 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR---QVISCDKSICTLQITDTTGSHQFP-------AM---Q 68 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE---EEEEETTEEEEEEEEECCSCSSCH-------HH---H
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE---EEEEECCEEEEEEEEECCCchhhH-------HH---H
Confidence 358999999999999999999998653211 111112222 2223343 578999999975421 11 1
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++.. +|++++|++++..........++..+.+..+.....|+++|+||+|+..
T Consensus 69 ~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~ 123 (172)
T 2erx_A 69 RLSISK--GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESP 123 (172)
T ss_dssp HHHHHH--CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGG
T ss_pred HHhccc--CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccc
Confidence 122332 7999999887743211123345555655543323578999999999864
No 30
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.24 E-value=4.8e-12 Score=138.34 Aligned_cols=120 Identities=23% Similarity=0.245 Sum_probs=81.4
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCC-CCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLR-SPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~-ds~~~~~~~eeIl~~Ikk 547 (1109)
+.+|+|+|++|||||||+|+|+|...+.++.. ++||+ ........++.++.++||||+. ... ......+......
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~-~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~--~~l~~~~~~~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRK-AQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEK--RAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCC-SSCCSSCEEEEEEETTEEEEEESSSSCCHHHH--HHHHHHHTCCTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCC-CCcceeeEEEEEEECCeeEEEEECcCCCccch--hhHHHHHHHHHHH
Confidence 34799999999999999999999987776664 77776 4455567788999999999996 211 0011111111111
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++ ..+|++++|++.+. +...+..+++.+.. ...|+|+|+||+|..
T Consensus 85 ~l--~~~D~vl~Vvd~~~--~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~ 129 (301)
T 1ega_A 85 SI--GDVELVIFVVEGTR--WTPDDEMVLNKLRE-----GKAPVILAVNKVDNV 129 (301)
T ss_dssp CC--CCEEEEEEEEETTC--CCHHHHHHHHHHHS-----SSSCEEEEEESTTTC
T ss_pred HH--hcCCEEEEEEeCCC--CCHHHHHHHHHHHh-----cCCCEEEEEECcccC
Confidence 22 24799999977654 44445555555542 247999999999975
No 31
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.23 E-value=5.1e-11 Score=136.38 Aligned_cols=122 Identities=21% Similarity=0.299 Sum_probs=79.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcc------hhhhHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIG------RTVNKK 540 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~------~~~~ee 540 (1109)
...++|+|+|++|||||||+|.|+|.....+++. ++||+ .......++|.++.+|||||+...... ......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~-~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPI-PGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCC-C------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCC-CCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 3568999999999999999999999988788886 78876 556677889999999999998542210 000111
Q ss_pred HHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 541 TLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 541 Il~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.. ..+.. +|++++|+++... ....+..+...+... .+++++|+||+|+..
T Consensus 257 ~~----~~i~~--ad~vllv~d~~~~-~~~~~~~i~~~l~~~-----~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 257 VV----DSIEK--ADVVVIVLDATQG-ITRQDQRMAGLMERR-----GRASVVVFNKWDLVV 306 (439)
T ss_dssp HH----HHHHH--CSEEEEEEETTTC-CCHHHHHHHHHHHHT-----TCEEEEEEECGGGST
T ss_pred HH----HHHhh--CCEEEEEEeCCCC-CCHHHHHHHHHHHHc-----CCCEEEEEECccCCC
Confidence 11 22332 7999999776542 222244444444332 489999999999864
No 32
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.22 E-value=2.4e-10 Score=109.12 Aligned_cols=118 Identities=20% Similarity=0.160 Sum_probs=71.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+|+|.+|||||||+|+|++..... .+.+.+.........+++. .+.||||||..... .+. ..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~---~~ 70 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIE--KYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-------SMR---DL 70 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHH---HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcc--cCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH-------HHH---HH
Confidence 5799999999999999999999765322 2222222233444556664 48899999964421 111 12
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|++++....-..-...+..+..... ....|+++|+||+|+..
T Consensus 71 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 71 YIK--NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLES 122 (167)
T ss_dssp HHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGG
T ss_pred Hhc--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccc
Confidence 233 27999999877642210011223333443322 12478999999999854
No 33
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.22 E-value=6.6e-11 Score=116.05 Aligned_cols=122 Identities=16% Similarity=0.200 Sum_probs=73.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEE-EEEEEEC-----------CEEEEEEeCCCCCCCCcc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVK-VIAGLVH-----------GVKIRIFDTPGLRSPAIG 534 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~-e~~~~i~-----------G~~VtLIDTPGL~ds~~~ 534 (1109)
.+..++|+|+|.+|||||||+|+|++..... ......+.... .....+. ...+.||||||....
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~--- 83 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF--- 83 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG---
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH---
Confidence 3456899999999999999999999755321 11101111121 2233344 358999999998431
Q ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 535 RTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 535 ~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.. ....++. .+|++++|++++.......-..++..+..... ....|+++|+||+|+..
T Consensus 84 ----~~---~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 84 ----RS---LTTAFFR--DAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLED 141 (195)
T ss_dssp ----HH---HHHHTTT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGG
T ss_pred ----HH---HHHHHHc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 11 1223333 48999999887653211112334444444322 12478999999999854
No 34
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.21 E-value=1.4e-10 Score=114.91 Aligned_cols=122 Identities=16% Similarity=0.230 Sum_probs=77.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
.+..++|+|+|.+|||||||+|+|++..... ......+.........+++ ..+.||||||...... +
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~--- 81 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-------I--- 81 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCT-------T---
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhh-------h---
Confidence 3456899999999999999999999765422 2221223334445556676 6789999999643221 1
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPP 603 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~p 603 (1109)
...++. .+|++++|++++....-..-..++..+...... ..|+++|+||+|+...
T Consensus 82 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 82 TSSYYR--GAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK 136 (196)
T ss_dssp HHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT
T ss_pred HHHHHh--hCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc
Confidence 112333 489999998877532111123344555444332 4789999999998643
No 35
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.21 E-value=1.2e-10 Score=124.46 Aligned_cols=126 Identities=17% Similarity=0.204 Sum_probs=73.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcc-----eecCCCCc----------------------eeEE------------
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKS-----TINAFEPA----------------------TSSV------------ 508 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va-----~Vs~i~pg----------------------TTrv------------ 508 (1109)
....+|+|+|.+|||||||+|+|+|.... .++.. |+ ||+-
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~-p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRR-PLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSS-CEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCccccc-ceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 35579999999999999999999998764 22222 33 2110
Q ss_pred ------------EEEEEE-ECCEEEEEEeCCCCCCCCc---chhhhHHHHHHHHHHHhcCCCc-EEEEEecCCCCCCCCC
Q 036930 509 ------------KVIAGL-VHGVKIRIFDTPGLRSPAI---GRTVNKKTLASIRKSIKKFPPD-VVLYVDRLDTHTRDHN 571 (1109)
Q Consensus 509 ------------~e~~~~-i~G~~VtLIDTPGL~ds~~---~~~~~eeIl~~Ikk~Lk~~gpD-VVLLVvrlds~t~d~e 571 (1109)
...... .++.+++||||||+..... ...........+..++.. ++ ++|+|++.+. .....
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~il~v~d~~~-~~~~~ 179 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANS-DLANS 179 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS--TTEEEEEEEESSS-CGGGC
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC--CCeEEEEEecCCc-chhhh
Confidence 000001 1247899999999986431 111112333344455543 45 5557866653 22222
Q ss_pred cH-HHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 572 DL-PLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 572 D~-~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+. .+++.+.. ...++++|+||+|+..
T Consensus 180 ~~~~~~~~~~~-----~~~~~i~V~NK~Dl~~ 206 (299)
T 2aka_B 180 DALKIAKEVDP-----QGQRTIGVITKLDLMD 206 (299)
T ss_dssp HHHHHHHHHCT-----TCSSEEEEEECGGGSC
T ss_pred HHHHHHHHhCC-----CCCeEEEEEEccccCC
Confidence 32 34443322 2479999999999865
No 36
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.21 E-value=8.3e-12 Score=151.28 Aligned_cols=172 Identities=19% Similarity=0.238 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHh---hCCCCchhhhHHHHHHHHHHHhhhcccccCCCcEEEEE
Q 036930 400 RKIEKIQILRVKFLRLVQRLGHSFDDSVVAQVLYRLALA---LGGHSSQAVSIEAAKRVAEQHEIEDKDDMDFSLNILVL 476 (1109)
Q Consensus 400 ~l~~kLe~~RvkLLrLlarLgaspEddlvaqVL~rl~~a---~~~~~~~~~~le~a~~~a~qlla~~~e~L~~gLrIaLV 476 (1109)
.-.+.+..||..|++++++++.. +...... ......-...+..+...+..+ .+.+++|+|+
T Consensus 12 ~~l~~~~~~r~~L~~~l~~le~~---------ld~~e~~~~~~~~~~~l~~~l~~L~~~~~~l-------~~~~~~V~Vv 75 (695)
T 2j69_A 12 QDLERVAQVRSEMSVCLNKLAET---------INKAELAGDSSSGKLSLERDIEDITIASKNL-------QQGVFRLLVL 75 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHTTTTTTTCCCCCHHHHHHHHHHHHHH-------HHCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHhhhccccchhhhHHHHHHHHHHHHHHHh-------ccCCCEEEEE
Confidence 34567888999999988776432 1111000 000000011122233332222 3457899999
Q ss_pred ecCCCChhHHHHHHhCCCcceecCCCCceeEEEEE--------EEE--------------------ECC-----------
Q 036930 477 GKTGVGKSATINSIFGEEKSTINAFEPATSSVKVI--------AGL--------------------VHG----------- 517 (1109)
Q Consensus 477 GkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~--------~~~--------------------i~G----------- 517 (1109)
|.+|+|||||+|+|+|...+.++.. |+|..+... ... +.+
T Consensus 76 G~~naGKSSLlNaLlg~~~~~v~~~-p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~l~~~~~ 154 (695)
T 2j69_A 76 GDMKRGKSTFLNALIGENLLPSDVN-PCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKK 154 (695)
T ss_dssp CCTTSCHHHHHHHHHTSSCSCCCCC-TTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHHHHTSSC
T ss_pred CCCCCCHHHHHHHHhCCCCCCCCCC-CCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHHHhhccc
Confidence 9999999999999999988877774 666321100 000 001
Q ss_pred -------------------EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHH
Q 036930 518 -------------------VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKS 578 (1109)
Q Consensus 518 -------------------~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~ 578 (1109)
..++||||||+.+... . ...+..++. .+|+||||++.+.. ....+...+.
T Consensus 155 ~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~---~----~~~~~~~i~--~aD~vL~Vvda~~~-~s~~e~~~l~- 223 (695)
T 2j69_A 155 QAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA---R----NELSLGYVN--NCHAILFVMRASQP-CTLGERRYLE- 223 (695)
T ss_dssp CSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT---C----HHHHTHHHH--SSSEEEEEEETTST-TCHHHHHHHH-
T ss_pred cccccceEEEEEccchhccCCeEEEECCCCCchhh---H----HHHHHHHHH--hCCEEEEEEeCCCc-cchhHHHHHH-
Confidence 3689999999976321 1 112233444 38999999877542 2222333332
Q ss_pred HHhhhCCCCCCeEEEEEeccCCCC
Q 036930 579 LTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 579 I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.... ....++++|+||+|+..
T Consensus 224 --~~l~-~~~~~iiiVlNK~Dl~~ 244 (695)
T 2j69_A 224 --NYIK-GRGLTVFFLVNAWDQVR 244 (695)
T ss_dssp --HHTT-TSCCCEEEEEECGGGGG
T ss_pred --HHHH-hhCCCEEEEEECccccc
Confidence 2221 12367999999999864
No 37
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.20 E-value=7.9e-11 Score=115.79 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=70.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC-----------------------------
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG----------------------------- 517 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G----------------------------- 517 (1109)
+..++|+|+|.+|||||||+|+|++.... ..+.+.+. ........+++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFH--ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCC--SSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCC--CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence 35689999999999999999999987532 12112211 12222333333
Q ss_pred ----------EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCC
Q 036930 518 ----------VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSV 587 (1109)
Q Consensus 518 ----------~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v 587 (1109)
..+.||||||...... + ...++. .+|++|||++++..........++..+....+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~---~~~~~~--~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--- 147 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYAS-------I---VPLYYR--GATCAIVVFDISNSNTLDRAKTWVNQLKISSN--- 147 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTT-------T---HHHHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC---
T ss_pred cccccCccceeEEEEEECCCcHHHHH-------H---HHHHhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC---
Confidence 7899999999643221 1 122333 48999999887643211111223444444322
Q ss_pred CCeEEEEEeccC
Q 036930 588 WQNAILCLTHAA 599 (1109)
Q Consensus 588 ~k~vIVVLTKaD 599 (1109)
.|+++|+||+|
T Consensus 148 -~piilv~NK~D 158 (208)
T 3clv_A 148 -YIIILVANKID 158 (208)
T ss_dssp -CEEEEEEECTT
T ss_pred -CcEEEEEECCC
Confidence 89999999999
No 38
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.20 E-value=4.5e-11 Score=120.23 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=74.6
Q ss_pred cccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHH
Q 036930 465 DDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 465 e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
......++|+|+|.+|||||||+|+|++.... .... +.++ ........+++ ..+.||||||...... .
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~---- 85 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFI-TTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT---I---- 85 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSS-CCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC---C----
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCC-cccC-CcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH---H----
Confidence 34566799999999999999999999976532 2221 2222 24445556677 6799999999654221 0
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCC
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAAS 600 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~ 600 (1109)
...++. .+|++++|++++....-.....++..+..... ...|+++|+||+|+
T Consensus 86 ---~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl 137 (213)
T 3cph_A 86 ---TTAYYR--GAMGIILVYDVTDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDM 137 (213)
T ss_dssp ---CHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTT--TCSEEEEEEECTTC
T ss_pred ---HHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCC
Confidence 112232 48999999887643211112344555555432 24789999999998
No 39
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.20 E-value=6.6e-11 Score=126.71 Aligned_cols=120 Identities=22% Similarity=0.297 Sum_probs=82.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
..++|+|+|.+|||||||+|+|+|... .++.+ |++|. .........+..+.||||||+...... ...+.+. +.
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~-pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~-~~~e~v~---~~ 77 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANW-PGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYS-SIDEKIA---RD 77 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEEC-TTSCCEEEEEEEEETTEEEEEEECCCCSSCCSS-SHHHHHH---HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCC-CCceEEEEEEEEEECCeEEEEEECCCcCccCCC-CHHHHHH---HH
Confidence 357999999999999999999999774 56766 56554 556666778999999999998764321 1122222 22
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++....+|++++|++.+... ....++..+.+. ..|+++|+||+|+..
T Consensus 78 ~~~~~~~d~ii~V~D~t~~~---~~~~~~~~l~~~-----~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 78 YLLKGDADLVILVADSVNPE---QSLYLLLEILEM-----EKKVILAMTAIDEAK 124 (258)
T ss_dssp HHHHSCCSEEEEEEETTSCH---HHHHHHHHHHTT-----TCCEEEEEECHHHHH
T ss_pred HHhhcCCCEEEEEeCCCchh---hHHHHHHHHHhc-----CCCEEEEEECcCCCC
Confidence 33324689999997766421 122333334332 479999999999754
No 40
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.20 E-value=5.9e-11 Score=116.22 Aligned_cols=118 Identities=25% Similarity=0.322 Sum_probs=73.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
.++|+|+|++|||||||+|.|++... .++.+ |++|. .......+++..+.+|||||....... ...+.+.. .+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~-~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~---~~ 76 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-YIGNW-PGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN-SIDEIIAR---DY 76 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-SCC------CCCCCEEEEEETTEEEEEEECCCCSCSSSS-SHHHHHHH---HH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-eccCC-CCcceeeeEEEEEECCcEEEEEECCCcccCCCc-chhHHHHH---HH
Confidence 46899999999999999999998653 34444 55543 344455678899999999998764311 11112211 22
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+....+|++++|++++... ....++..+.+. ..|+++|.||+|+.
T Consensus 77 ~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~~-----~~p~ilv~nK~Dl~ 121 (165)
T 2wji_A 77 IINEKPDLVVNIVDATALE---RNLYLTLQLMEM-----GANLLLALNKMDLA 121 (165)
T ss_dssp HHHHCCSEEEEEEETTCHH---HHHHHHHHHHHT-----TCCEEEEEECHHHH
T ss_pred HhcCCCCEEEEEecCCchh---HhHHHHHHHHhc-----CCCEEEEEEchHhc
Confidence 2212589999997765421 122233333331 47899999999974
No 41
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.20 E-value=2.4e-10 Score=112.03 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=72.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEE--EEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVK--IRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~--VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|+|++... ...+.+.+.........+++.. +.||||||...... . ..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~-------~~ 70 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA---M-------RD 70 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT---T-------HH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH---H-------HH
Confidence 358999999999999999999997663 2222233333444555667755 67799999754321 1 11
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++....-..-...+..+..... ....|+++|+||+|+..
T Consensus 71 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 71 QYMR--TGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSS
T ss_pred HHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcc
Confidence 2222 27999999877653211111223334443322 23479999999999863
No 42
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.20 E-value=8.7e-11 Score=113.39 Aligned_cols=118 Identities=23% Similarity=0.196 Sum_probs=76.5
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
.+...++|+|+|.+|||||||+|+|++....... | |.........+++.++.+|||||...... + .
T Consensus 3 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~-t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~---~ 68 (171)
T 1upt_A 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTI---P-TIGFNVETVTYKNLKFQVWDLGGLTSIRP-------Y---W 68 (171)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCC---C-CSSEEEEEEEETTEEEEEEEECCCGGGGG-------G---G
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCcC---C-cCccceEEEEECCEEEEEEECCCChhhhH-------H---H
Confidence 4567799999999999999999999876542211 2 22233445567799999999999854211 0 1
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++++|++++.... -..+..++...+.. ....|+++|+||+|+..
T Consensus 69 ~~~~~--~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 122 (171)
T 1upt_A 69 RCYYS--NTDAVIYVVDSCDRDR---IGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122 (171)
T ss_dssp GGGCT--TCSEEEEEEETTCCTT---HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHhc--cCCEEEEEEECCCHHH---HHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC
Confidence 12222 5899999988765321 11222333333222 12479999999999864
No 43
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.19 E-value=7.9e-11 Score=114.24 Aligned_cols=120 Identities=18% Similarity=0.168 Sum_probs=73.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...++|+|+|.+|||||||+|+|++...........+++ .......+++ ..+.||||||..... .. .
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~----~ 81 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE-FGTRIIEVSGQKIKLQIWDTAGQERFR------AV----T 81 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCC-EEEEEEEETTEEEEEEEEECTTGGGTC------HH----H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE-EEEEEEEECCeEEEEEEEECCCChHhh------hh----H
Confidence 446899999999999999999999866422111111111 2233334454 578999999964321 11 2
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++++|++++..........++..+..... ...|+++|+||+|+..
T Consensus 82 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 82 RSYYR--GAAGALMVYDITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEA 134 (179)
T ss_dssp HHHHH--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred HHHhc--cCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 22333 38999999887653211112234444554432 2478999999999853
No 44
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.19 E-value=9e-11 Score=112.13 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=71.1
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+++|.+|||||||+|+|++.... ..+.+.+.........+++ ..+.||||||..... .+ ...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~---~~~ 71 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AI---RDN 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-------HH---HHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH-------HH---HHH
Confidence 479999999999999999999986532 2222222222333445666 478999999964321 11 122
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|++++....-.....++..+..... ....|+++|+||+|+..
T Consensus 72 ~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 72 YFR--SGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 123 (168)
T ss_dssp HHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTSCEEEEEECGGGGG
T ss_pred Hhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccccc
Confidence 233 27999999877642210111233344444332 12479999999999854
No 45
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.19 E-value=2.2e-10 Score=108.99 Aligned_cols=118 Identities=15% Similarity=0.159 Sum_probs=71.1
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+++|.+|||||||+|+|++..... ...+.+.........+++ ..+.+|||||..... .+. ..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~---~~ 70 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMR---DQ 70 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC-------HHH---HH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc--ccCCccceEEEEEEEECCEEEEEEEEECCCchhhh-------HHH---HH
Confidence 4789999999999999999999765322 221222222233444555 457899999975422 111 12
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|++++....-..-..++..+..... ....|+++|+||+|+..
T Consensus 71 ~~~--~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 71 YMR--TGEGFLCVFAINNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC
T ss_pred hhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhh
Confidence 222 27999999877642210111233444444332 12478999999999864
No 46
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.19 E-value=4.1e-11 Score=116.44 Aligned_cols=119 Identities=19% Similarity=0.178 Sum_probs=74.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...++|+|+|.+|||||||+|+|++.... .......|.........+++ ..+.||||||....... .
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~ 75 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI----------T 75 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC----------C
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh----------H
Confidence 45689999999999999999999987653 22221223334455666777 67899999996442210 0
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++++|++++.......-..++..+.... ...|+++|+||+|+..
T Consensus 76 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~ 127 (181)
T 3tw8_B 76 STYYR--GTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPE 127 (181)
T ss_dssp GGGGT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGG
T ss_pred HHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCch
Confidence 11222 4899999988765321111122334444432 2478999999999754
No 47
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.19 E-value=1e-10 Score=115.52 Aligned_cols=116 Identities=20% Similarity=0.251 Sum_probs=73.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
...++|+|+|.+|||||||+|+|++... ..+.| |.........+++.++.+|||||..... .....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~---~~~~~-t~~~~~~~~~~~~~~~~~~Dt~G~~~~~----------~~~~~ 81 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDV---DTISP-TLGFNIKTLEHRGFKLNIWDVGGQKSLR----------SYWRN 81 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCC---SSCCC-CSSEEEEEEEETTEEEEEEEECCSHHHH----------TTGGG
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCC---Ccccc-cCccceEEEEECCEEEEEEECCCCHhHH----------HHHHH
Confidence 4568999999999999999999998762 22212 2223344555689999999999973211 01112
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
++ ..+|++++|++++.... ...+..++...... ....|+++|+||+|+..
T Consensus 82 ~~--~~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 82 YF--ESTDGLIWVVDSADRQR---MQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp GC--TTCSEEEEEEETTCGGG---HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred Hh--cCCCEEEEEEECcCHHH---HHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 22 25899999988765321 11222333333221 12479999999999854
No 48
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.19 E-value=9.7e-11 Score=125.17 Aligned_cols=120 Identities=19% Similarity=0.196 Sum_probs=82.2
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
.++|+|+|.+|||||||+|+|+|... .++.. +++|. .......+++..+.||||||+.+.... ...+.+ .+.+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~-~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~--~~~~~~--~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNW-PGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAH--SIDELI--ARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEEC-TTSSCEEEEEEEEETTEEEEEEECCCCSCCCSS--CHHHHH--HHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCC-CCeEEEeeEEEEEECCceEEEEeCCCccccccC--CHHHHH--HHHh
Confidence 46899999999999999999999865 77775 55544 666777889999999999999764321 111211 2233
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+....+|++++|++.+... ....++..+.+. + ..|+++|+||+|+..
T Consensus 77 ~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~~ 123 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTCLM---RNLFLTLELFEM-E---VKNIILVLNKFDLLK 123 (271)
T ss_dssp HHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT-T---CCSEEEEEECHHHHH
T ss_pred hhccCCcEEEEEecCCcch---hhHHHHHHHHhc-C---CCCEEEEEEChhcCc
Confidence 4334699999997665421 122333333332 1 278999999999753
No 49
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.19 E-value=4.4e-11 Score=115.09 Aligned_cols=119 Identities=15% Similarity=0.058 Sum_probs=72.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|+|++...........+++. ......+.+ ..+.+|||||...... + ..
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~---~~ 73 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF-MTKTVQYQNELHKFLIWDTAGLERFRA-------L---AP 73 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGGG-------G---TH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEE-EEEEEEECCeEEEEEEEcCCCchhhhc-------c---cH
Confidence 458999999999999999999998763221111233332 222333444 7789999999843210 1 11
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++..........++..+..... ...++++|.||+|+..
T Consensus 74 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 74 MYYR--GSAAAIIVYDITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTD 125 (170)
T ss_dssp HHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGG
T ss_pred hhCc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECCcccc
Confidence 2233 47999999887653211111234444444322 2468999999999864
No 50
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.19 E-value=2.6e-10 Score=111.39 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=73.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|+|++... ...+.+.+.........+++ ..+.||||||..... .+. .
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~---~ 84 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIR---D 84 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHH---H
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH-------HHH---H
Confidence 458999999999999999999997653 22222322223334445666 478999999975421 111 1
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++....-.....++..+..... ....|+++|+||+|+..
T Consensus 85 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 137 (187)
T 2a9k_A 85 NYFR--SGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 137 (187)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGG
T ss_pred HHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 2233 27999999877642211111233444444432 12478999999999854
No 51
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.19 E-value=3.2e-11 Score=116.18 Aligned_cols=117 Identities=17% Similarity=0.089 Sum_probs=62.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+|+|.+|||||||+|+|++.....+... ++++.. ....+++ ..+.+|||||..... .+ ...
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~-------~~---~~~ 68 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEA-AGHTYD--RSIVVDGEEASLMVYDIWEQDGGR-------WL---PGH 68 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEE--EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCc-cccceE--EEEEECCEEEEEEEEECCCCccch-------hh---hhh
Confidence 47999999999999999999998776555443 555553 2334444 568899999975421 11 111
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|.+++....-..-...+..+..... ....|+++|.||+|+..
T Consensus 69 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 69 CMA--MGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVR 120 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCS
T ss_pred hhh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEecccccc
Confidence 222 47999999887743210111122333333211 22478999999999864
No 52
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.18 E-value=1.5e-10 Score=111.37 Aligned_cols=117 Identities=18% Similarity=0.216 Sum_probs=71.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..++|+|+|.+|||||||+|+|++.... ... .+.++ ........+++ ..+.||||||...... . .
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~-------~ 69 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFN-PSF-ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT---I-------T 69 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCC-C--------CCEEEEEEESSSCEEEEEEECCTTGGGTSC---C-------C
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCC-CCC-CCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh---h-------H
Confidence 3579999999999999999999976532 111 12222 23334445555 5789999999644221 0 1
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..++. .+|++++|++++....-..-..++..+..... ...|+++|+||+|+.
T Consensus 70 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 70 TAYYR--GAMGIILVYDITDERTFTNIKQWFKTVNEHAN--DEAQLLLVGNKSDME 121 (170)
T ss_dssp HHHHT--TEEEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCT
T ss_pred HHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCC
Confidence 12232 47999999887643211112334555554432 247999999999983
No 53
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.18 E-value=2.5e-10 Score=127.18 Aligned_cols=127 Identities=17% Similarity=0.258 Sum_probs=84.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
...++|+|+|.+|||||||+|+|++.. +.++.. ++||. .........+..+.+|||||+.+..... ........+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~-~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~-~~~~~~~~~~ 241 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASY-PFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISE-RNEIEKQAIL 241 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECC-TTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTT-SCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCC-CCeeeceeEEEEEecCceEEEEeCCCccccchhh-hhHHHHHHHH
Confidence 466899999999999999999999987 455554 55554 5555666678999999999997643211 1111112222
Q ss_pred HHHhcCCCcEEEEEecCCCCC-CCC-CcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHT-RDH-NDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t-~d~-eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+. ..+|++|+|++++... .+. ....++..+...++ ..++|+|+||+|+..
T Consensus 242 -~~~-~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 242 -ALR-YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVAD 294 (357)
T ss_dssp -GGG-GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCC
T ss_pred -HHH-hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCC
Confidence 121 2489999997765432 121 12455666666553 479999999999853
No 54
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=4.6e-11 Score=119.52 Aligned_cols=121 Identities=17% Similarity=0.073 Sum_probs=73.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcc-eecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKS-TINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va-~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
....++|+|+|.+|||||||+|+|++.... .+.. ..+++. .........+.++.||||||...... +
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~--- 88 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISP-TIGASFMTKTVPCGNELHKFLIWDTAGQERFHS-------L--- 88 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCC-CSSEEEEEEEEECSSSEEEEEEEEECCSGGGGG-------G---
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCC-CcceeEEEEEEEeCCEEEEEEEEcCCCchhhHh-------h---
Confidence 345689999999999999999999986532 2222 234433 22222222457899999999643211 0
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++++|++++..........++..+..... ...|+++|+||+|+..
T Consensus 89 ~~~~~~--~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 89 APMYYR--GSAAAVIVYDITKQDSFYTLKKWVKELKEHGP--ENIVMAIAGNKCDLSD 142 (192)
T ss_dssp THHHHT--TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred hHHhhc--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECccccc
Confidence 112233 48999999887653211111233444444321 2479999999999853
No 55
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.17 E-value=5e-11 Score=118.67 Aligned_cols=123 Identities=20% Similarity=0.204 Sum_probs=75.1
Q ss_pred cccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC--CEEEEEEeCCCCCCCCcchhhhHHHH
Q 036930 465 DDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH--GVKIRIFDTPGLRSPAIGRTVNKKTL 542 (1109)
Q Consensus 465 e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~--G~~VtLIDTPGL~ds~~~~~~~eeIl 542 (1109)
+.....++|+|+|.+|||||||+|+|++...........+++ .......+. +.++.||||||...... +
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~- 90 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVE-FSTRTVMLGTAAVKAQIWDTAGLERYRA-------I- 90 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEE-EEEEEEEETTEEEEEEEEEESCCCTTCT-------T-
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccee-EEEEEEEECCEEEEEEEEeCCCchhhhh-------h-
Confidence 445667899999999999999999999876433322111222 222233333 46789999999865321 1
Q ss_pred HHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 543 ASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 543 ~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++|+|++++....-..-..++..+.... ....++++|+||+|+..
T Consensus 91 --~~~~~~--~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~ 144 (193)
T 2oil_A 91 --TSAYYR--GAVGALLVFDLTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQ 144 (193)
T ss_dssp --HHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGG
T ss_pred --hHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCccc
Confidence 112233 4899999987764221111123344443322 13478999999999854
No 56
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.17 E-value=8.6e-11 Score=116.73 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=73.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...++|+|+|.+|||||||+|+|++..... .+.+...........+++ ..+.||||||..... .+.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~--- 73 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRD--TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------AMQ--- 73 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCC--TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-------HHH---
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCC--cccCccccceeEEEEECCEEEEEEEEeCCChHHhH-------HHH---
Confidence 346899999999999999999999754321 111111111122233444 578999999964421 111
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++++|++++....-.....++..+....+.....|+++|+||+|+..
T Consensus 74 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 74 RLSIS--KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHHHH--HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHhhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 12222 27999999887753211112334555555433223468999999999864
No 57
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.16 E-value=1.9e-10 Score=113.50 Aligned_cols=120 Identities=24% Similarity=0.319 Sum_probs=77.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
..++|+|+|++|||||||+|.|++.. +.++.. +++| ........+++..+.+|||||....... ...+.+.. .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~-~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~---~ 79 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN-VYIGNW-PGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN-SIDEIIAR---D 79 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC-EEEEEC-TTSCCEEEEEEEEETTEEEEEEECCCCSCCSSS-SHHHHHHH---H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-ccccCC-CCeeccceEEEEEeCCcEEEEEECCCcCccccc-cHHHHHHH---H
Confidence 35799999999999999999999875 345554 5544 3556667788999999999998764211 11112211 1
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++....+|++++|++..... ....++..+.. ...|+++|.||+|+..
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~---~~~~~~~~~~~-----~~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 80 YIINEKPDLVVNIVDATALE---RNLYLTLQLME-----MGANLLLALNKMDLAK 126 (188)
T ss_dssp HHHHHCCSEEEEEEEGGGHH---HHHHHHHHHHT-----TTCCEEEEEECHHHHH
T ss_pred HHhccCCCEEEEEecchhHH---HHHHHHHHHHh-----cCCCEEEEEEhhhccc
Confidence 22212479999997665311 12223333332 2478999999999743
No 58
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.16 E-value=4.6e-11 Score=118.61 Aligned_cols=136 Identities=10% Similarity=0.101 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhhhc-ccccCCCcEEEEEecCCCChhHHHHHHhCCCcce-ecCCCCceeEEEEEEEEECCEEEEEEeCCC
Q 036930 450 EAAKRVAEQHEIED-KDDMDFSLNILVLGKTGVGKSATINSIFGEEKST-INAFEPATSSVKVIAGLVHGVKIRIFDTPG 527 (1109)
Q Consensus 450 e~a~~~a~qlla~~-~e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~-Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPG 527 (1109)
..+...+.+.+... .......++|+|+|.+|||||||+|+|++..... +....+.++. .+.+..+.||||||
T Consensus 27 ~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~l~Dt~G 100 (193)
T 2ged_A 27 SQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA------DYDGSGVTLVDFPG 100 (193)
T ss_dssp HHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CCCCTTCSEEEETT
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee------eecCCeEEEEECCC
Confidence 44455554444321 1223567899999999999999999999875322 1111122221 12567889999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCC-CCCCCCCcHHHHHHHHhhhC-----CCCCCeEEEEEeccCCC
Q 036930 528 LRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLD-THTRDHNDLPLLKSLTSSLG-----SSVWQNAILCLTHAASE 601 (1109)
Q Consensus 528 L~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrld-s~t~d~eD~~lLk~I~e~FG-----~~v~k~vIVVLTKaD~l 601 (1109)
...... . +...+...+. .+|+++||++++ .... ...+..++...+. .....|+++|+||+|+.
T Consensus 101 ~~~~~~---~---~~~~~~~~~~--~~~~~i~v~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 169 (193)
T 2ged_A 101 HVKLRY---K---LSDYLKTRAK--FVKGLIFMVDSTVDPKK---LTTTAEFLVDILSITESSCENGIDILIACNKSELF 169 (193)
T ss_dssp CCBSSC---C---HHHHHHHHGG--GEEEEEEEEETTCCHHH---HHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred CchHHH---H---HHHHHHhhcc--cCCEEEEEEECCCCchh---HHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence 866432 1 1122233222 379999998776 2110 1122222322221 11247899999999986
Q ss_pred C
Q 036930 602 P 602 (1109)
Q Consensus 602 ~ 602 (1109)
.
T Consensus 170 ~ 170 (193)
T 2ged_A 170 T 170 (193)
T ss_dssp T
T ss_pred C
Confidence 5
No 59
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.16 E-value=6.9e-11 Score=116.17 Aligned_cols=121 Identities=20% Similarity=0.211 Sum_probs=75.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
.+..++|+|+|.+|||||||+|+|++...... .....++........+++ ..+.||||||.... .. .
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~---~ 75 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD-SNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RS---V 75 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTT-CCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HH---H
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HH---H
Confidence 34568999999999999999999997654221 111222234444555666 68899999996331 11 1
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++++|++++.......-..++..+..... ...|+++|+||+|+..
T Consensus 76 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 76 TRSYYR--GAAGALLVYDITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDA 129 (186)
T ss_dssp HHTTST--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred HHHHHh--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 222232 48999999887653211112233444444322 2479999999999853
No 60
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.16 E-value=6.3e-11 Score=114.93 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=73.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
.++|+|+|.+|||||||+|+|++...... . .+.++ ........+++ ..+.||||||...... + ..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~---~~ 81 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNT-Y-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------L---IP 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSS-C-CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-------G---SH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-C-CCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH-------H---HH
Confidence 48999999999999999999997653221 1 12222 34444555666 5789999999643211 1 11
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++....-.....++..+....+ ...|+++|+||+|+..
T Consensus 82 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 133 (179)
T 2y8e_A 82 SYIR--DSTVAVVVYDITNTNSFHQTSKWIDDVRTERG--SDVIIMLVGNKTDLSD 133 (179)
T ss_dssp HHHH--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT--TSSEEEEEEECGGGGG
T ss_pred HHhc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccc
Confidence 2233 38999999887642211112334444544433 2478999999999854
No 61
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.16 E-value=4.4e-10 Score=109.33 Aligned_cols=119 Identities=17% Similarity=0.112 Sum_probs=72.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..++|+|+|.+|||||||+|+|++.... ... .+.++ ........+++ ..+.||||||.... .. ..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~---~~ 73 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFD-TQL-FHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RS---LR 73 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCC-C-----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HH---HH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCC-CCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hh---hH
Confidence 3589999999999999999999976532 111 12222 23344555666 58899999996321 11 11
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASE 601 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l 601 (1109)
..++. .+|++++|++++....-..-..++..+...... ....|+++|+||+|+.
T Consensus 74 ~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 74 TPFYR--GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp GGGGT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred HHHHh--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 22232 489999998877532111122344445444321 1346899999999985
No 62
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.16 E-value=1.1e-10 Score=114.01 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=72.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|+|++...........+++ .......+++ ..+.||||||...... + ..
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~---~~ 79 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA-FFSQTLAVNDATVKFEIWDTAGQERYHS-------L---AP 79 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCS-EEEEEEEETTEEEEEEEEECCCSGGGGG-------G---TH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeE-EEEEEEEECCEEEEEEEEeCCCChhhhh-------h---hH
Confidence 35899999999999999999999875432221111221 2223334443 5789999999643210 1 11
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++....-.....++..+..... ...|+++|+||+|+..
T Consensus 80 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~ 131 (181)
T 2efe_B 80 MYYR--GAAAAIIVFDVTNQASFERAKKWVQELQAQGN--PNMVMALAGNKSDLLD 131 (181)
T ss_dssp HHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTT
T ss_pred HHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCcccc
Confidence 2233 48999999887642211112234444444322 2478999999999864
No 63
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.15 E-value=1.2e-10 Score=111.85 Aligned_cols=118 Identities=18% Similarity=0.128 Sum_probs=71.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC--CEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH--GVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~--G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+++|.+|||||||+|+|++.... ..+.+.+.........++ ...+.+|||||...... +. ..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~---~~ 70 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------MR---DL 70 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-------HH---HH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH-------HH---HH
Confidence 479999999999999999999975432 122122222223333444 35789999999754321 11 12
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|++++....-..-..++..+..... ....|+++|+||+|+..
T Consensus 71 ~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 71 YMK--NGQGFALVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLED 122 (167)
T ss_dssp HHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGG
T ss_pred Hhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccc
Confidence 222 27999999877653211112234444544432 22478999999999854
No 64
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.15 E-value=1.6e-10 Score=114.96 Aligned_cols=121 Identities=17% Similarity=0.177 Sum_probs=74.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|+|++......... ..+.........+++ ..+.||||||..... . ....
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~---~~~~ 88 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEA-TIGVDFRERAVDIDGERIKIQLWDTAGQERFR------K---SMVQ 88 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCC-CCSCCEEEEEEEETTEEEEEEEEECCCSHHHH------T---TTHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCC-CcceEEEEEEEEECCEEEEEEEEECCCchhhh------h---hhhH
Confidence 458999999999999999999997654222111 112223334445565 689999999953210 0 1122
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+++ .+|++|||++++....-..-..++..+...+. ....++++|+||+|+..
T Consensus 89 ~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 141 (189)
T 1z06_A 89 HYYR--NVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRS 141 (189)
T ss_dssp HHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGG
T ss_pred HHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 3333 48999999887642111112234445544432 23478999999999854
No 65
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.14 E-value=5.7e-12 Score=144.50 Aligned_cols=275 Identities=15% Similarity=0.087 Sum_probs=154.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCC---ceeEEEEEEEEEC-CEEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEP---ATSSVKVIAGLVH-GVKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~p---gTTrv~e~~~~i~-G~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
.+..|+|+|++|+|||||+|.|+|......+.+.. .+|+. .+..... ...++++|+||+..... .....+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~-~~v~q~~~~~~ltv~D~~g~~~~~~---~~~~~L~~ 143 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTME-RHPYKHPNIPNVVFWDLPGIGSTNF---PPDTYLEK 143 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CC-CEEEECSSCTTEEEEECCCGGGSSC---CHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeeccee-EEeccccccCCeeehHhhcccchHH---HHHHHHHH
Confidence 45689999999999999999999964332222211 12221 1111112 13589999999975321 12223222
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCCCCCC--CCCccHHHHHhhcHH
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPPDGPS--GLPLSYEVFVGQQSH 622 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd~~~--~~p~sieefV~q~~~ 622 (1109)
+. +. ..+.+++ ++... .......+++.+... .+++++|+||.|.+--++|. -++..-.... +
T Consensus 144 ~~--L~--~~~~~~~-lS~G~--~~kqrv~la~aL~~~-----~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~----~ 207 (413)
T 1tq4_A 144 MK--FY--EYDFFII-ISATR--FKKNDIDIAKAISMM-----KKEFYFVRTKVDSDITNEADGEPQTFDKEKVL----Q 207 (413)
T ss_dssp TT--GG--GCSEEEE-EESSC--CCHHHHHHHHHHHHT-----TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHH----H
T ss_pred cC--CC--ccCCeEE-eCCCC--ccHHHHHHHHHHHhc-----CCCeEEEEecCcccccCcccccCCHHHHHHHH----H
Confidence 21 22 2455554 33332 222345566666553 47999999999975222110 0111211111 1
Q ss_pred HHHHHHH----HHhC-CCceeccCC--CCHHHHHhhHHHHHhccccceecCCCCCchhhhhHHHHHHHHHHHhhcccccc
Q 036930 623 AIQQRIS----QAIG-DPHLMNLNM--MHPVSLVENHQSCQKNRIGEIVLPNGQSWRPQLLLLCFSLKILSEANSVSKSQ 695 (1109)
Q Consensus 623 ~LQelI~----qc~g-r~~lfn~s~--r~pv~LvEn~~l~~kn~ig~~VLpng~~W~~~LllLcya~k~L~Ea~g~lk~q 695 (1109)
.++++.. +.+. ...++..+. ....-+.+ +|.. ....+|.+.++.+.+.+..++...+++.....+..
T Consensus 208 ~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~---L~d~---I~~~Lpeg~~~~~~~~l~~~~~~~~e~k~~~~~~~ 281 (413)
T 1tq4_A 208 DIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPV---LMDK---LISDLPIYKRHNFMVSLPNITDSVIEKKRQFLKQR 281 (413)
T ss_dssp HHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHH---HHHH---HHHHSCGGGHHHHHHHSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHH---HHHH---HHHhCccchhhHHHHhcccchHHHHHHHHHHHHHH
Confidence 2333321 2111 112222121 11101222 2332 12346766554444444555566666666666666
Q ss_pred CCCCCccCCCC-CCCchhhHh-hhhhccCCCCCcccccCCCCCCchhhhhhhcCCCccchhccccCCCCCccchHH
Q 036930 696 GPAPKKFFGFR-RPAPLSYFL-SSLLQSHTHPKLSADQGGDGVESDVELVDFSGSDLEDEDEYDQLPPFKPLRKSQ 769 (1109)
Q Consensus 696 e~l~~~~~g~r-~~P~lp~Ll-SsLlq~r~~~k~~~~~~g~d~ds~~e~~~~~~~~~ede~eydqlP~f~~l~k~q 769 (1109)
.|..+...+.. .+|..+.+. .++..+...++.|+..||.|++|...+++.++.+.++.+...++|.++...+.+
T Consensus 282 i~~~a~~a~~~~~~P~~g~~~~~~~~~~~~~l~~~~~~FGld~~sl~~~a~~~~~~~~~~~~~~~s~~~~~~~~~~ 357 (413)
T 1tq4_A 282 IWLEGFAADLVNIIPSLTFLLDSDLETLKKSMKFYRTVFGVDETSLQRLARDWEIEVDQVEAMIKSPAVFKPTDEE 357 (413)
T ss_dssp HHHHHHHTCCBSSCTTSSCCCHHHHHHHHHHHHHHHHHTTCSHHHHHHHHSSSSSCHHHHHHTCSHHHHTSSCCHH
T ss_pred HHHHHHHhhhcccCCCcchhccccHHHHHHHHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHhChhhcccchhH
Confidence 66665555554 666644333 457777888999999999999999999999999999999999999887777654
No 66
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.14 E-value=5.9e-10 Score=109.29 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=71.0
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+|+|.+|||||||+|+|++... +..+.+.+.........+++ ..+.||||||....... ...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~~~ 73 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF----------PQT 73 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC----------CGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHH----------HHH
Confidence 57999999999999999999995542 22322222222244555666 56789999997653210 001
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|++++....-..-..++..+...+. ....|+++|.||+|+..
T Consensus 74 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 74 YSI--DINGYILVYSVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp GTT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTT
T ss_pred HHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchh
Confidence 222 48999999887642211011123333433332 12478999999999854
No 67
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.14 E-value=2.2e-10 Score=113.88 Aligned_cols=120 Identities=15% Similarity=0.124 Sum_probs=73.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC--CEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH--GVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~--G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
+..++|+|+|.+|||||||+|+|++...........+++ .......+. ...+.||||||....... .
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~ 88 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID-FKVKTVYRHDKRIKLQIWDTAGQERYRTI----------T 88 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCE-EEEEEEEETTEEEEEEEEECCSCCSSCCS----------G
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEE-EEEEEEEECCeEEEEEEEeCCCcHHHhhh----------H
Confidence 445899999999999999999999865422211112222 222233344 467899999997543210 1
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++++|++++....-.....++..+..... ...|+++|+||+|+..
T Consensus 89 ~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 141 (189)
T 2gf9_A 89 TAYYR--GAMGFLLMYDIANQESFAAVQDWATQIKTYSW--DNAQVILVGNKCDLED 141 (189)
T ss_dssp GGGGT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred HHhcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccc
Confidence 12232 48999999887643211112334455544421 2479999999999854
No 68
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.14 E-value=3.7e-10 Score=111.07 Aligned_cols=121 Identities=19% Similarity=0.199 Sum_probs=70.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCc-chhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAI-GRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~-~~~~~eeIl~~Ikk~ 548 (1109)
++|+|+|.+|||||||+|+|++.. +.++.. +++|. +... .+. .+.+|||||+..... +....+........+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~-~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKR-PGVTRKIIEI--EWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSS-TTCTTSCEEE--EET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCC-CCccceeEEE--ecC--CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 589999999999999999999876 444443 55554 3222 233 688999999765331 111122222222223
Q ss_pred Hh--cCCCcEEEEEecCCCCC----------CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IK--KFPPDVVLYVDRLDTHT----------RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk--~~gpDVVLLVvrlds~t----------~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+. ...++++++|.+..... ....+..+++.+.. ...|+++|.||+|+..
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~ 136 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-----LDIPTIVAVNKLDKIK 136 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-----TTCCEEEEEECGGGCS
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh-----cCCceEEEeehHhccC
Confidence 32 12478888886654311 00011222232222 1478999999999854
No 69
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.14 E-value=7.7e-11 Score=118.19 Aligned_cols=121 Identities=14% Similarity=0.150 Sum_probs=73.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC--CEEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH--GVKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~--G~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
....++|+|+|.+|||||||+|+|++...........+++ .......+. +.++.||||||.... .. .
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~---~ 73 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGID-FKVKTIYRNDKRIKLQIWDTAGLERY-------RT---I 73 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGG-------HH---H
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccee-EEEEEEEECCeEEEEEEEECCCchhh-------cc---h
Confidence 4456899999999999999999999876422111112222 222333444 368899999997431 11 1
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++++|++++....-.....++..+.... ....|+++|+||+|+..
T Consensus 74 ~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 74 TTAYYR--GAMGFILMYDITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMED 127 (203)
T ss_dssp HHTTGG--GCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTT
T ss_pred HHHhhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCc
Confidence 222333 4899999988764221011122334444332 12479999999999854
No 70
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.14 E-value=3.9e-11 Score=115.16 Aligned_cols=119 Identities=16% Similarity=0.118 Sum_probs=72.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+|+|.+|||||||+|+|++...........+++ .......+++ .++.+|||||..... .+ ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~---~~~ 71 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA-FLTQRVTINEHTVKFEIWDTAGQERFA-------SL---APX 71 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE-EEEEEEEETTEEEEEEEEEECCSGGGG-------GG---HHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee-EEEEEEEECCEEEEEEEEECCCChhhh-------hh---hhh
Confidence 4799999999999999999999765322111112222 2233344554 578999999964321 11 122
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPP 603 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~p 603 (1109)
++. .+|++++|++++....-..-..++..+..... ...|+++|+||+|+...
T Consensus 72 ~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 72 YYR--NAQAALVVYDVTKPQSFIKARHWVKELHEQAS--KDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGS
T ss_pred hhc--cCcEEEEEEecCChHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCcccc
Confidence 333 48999999887653211111223444444332 24789999999998754
No 71
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.14 E-value=2.7e-10 Score=112.57 Aligned_cols=120 Identities=21% Similarity=0.157 Sum_probs=71.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...++|+|+|.+|||||||+|+|++...........++ ........+++ ..+.||||||...... . .
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~-------~ 81 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGV-DFKVKTISVDGNKAKLAIWDTAGQERFRT---L-------T 81 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSE-EEEEEEEEETTEEEEEEEEEECSSGGGCC---S-------H
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccce-EEEEEEEEECCeEEEEEEEeCCCchhhhh---h-------h
Confidence 34589999999999999999999976532111111122 22223334444 6789999999754221 0 1
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
..++. .+|++|+|++++.......-..++..+..... ....|+++|+||+|+.
T Consensus 82 ~~~~~--~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~ 134 (195)
T 1x3s_A 82 PSYYR--GAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKE 134 (195)
T ss_dssp HHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSS
T ss_pred HHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCc
Confidence 12233 48999999887643211111223333333221 1347899999999984
No 72
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.13 E-value=2.1e-10 Score=114.98 Aligned_cols=122 Identities=15% Similarity=0.229 Sum_probs=72.2
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHH
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLA 543 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~ 543 (1109)
.....++|+|+|.+|||||||+|+|++......... ..+.........+++ ..+.||||||.... ..+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~-- 91 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKS-TVGVDFKIKTVELRGKKIRLQIWDTAGQERF-------NSI-- 91 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------C-CTTEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHH--
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCC-ccceeEEEEEEEECCeEEEEEEEeCCCcHHH-------HHH--
Confidence 345568999999999999999999998764322111 122223334445666 57899999996431 111
Q ss_pred HHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 544 SIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 544 ~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++|+|++++.......-..++..+..... ...++++|+||+|+..
T Consensus 92 -~~~~~~--~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 92 -TSAYYR--SAKGIILVYDITKKETFDDLPKWMKMIDKYAS--EDAELLLVGNKLDCET 145 (192)
T ss_dssp -HHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred -HHHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccc
Confidence 122233 27999999887653211111233344444322 2478999999999853
No 73
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.13 E-value=8.4e-10 Score=108.39 Aligned_cols=120 Identities=15% Similarity=0.136 Sum_probs=73.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEE--EEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVK--IRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~--VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...++|+|+|.+|||||||+|+|++.... ..+.+.+.........+++.. +.||||||...... . .
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~-------~ 83 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA---M-------R 83 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS---S-------H
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH---H-------H
Confidence 35689999999999999999999976432 222233333334555666655 55699999644221 1 1
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++++|++++....-..-..++..+..... ....|+++|.||+|+..
T Consensus 84 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 84 EQYMR--TGDGFLIVYSVTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMH 137 (183)
T ss_dssp HHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCST
T ss_pred HHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchh
Confidence 12222 27999999887753211112233444443322 22468999999999854
No 74
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.12 E-value=7.4e-11 Score=113.22 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=71.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC--CEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH--GVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~--G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|+|++...........+++. ......++ +..+.||||||..... .+ ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~---~~ 73 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF-LTQTVCLDDTTVKFEIWDTAGQERYH-------SL---AP 73 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE-EEEEEEETTEEEEEEEEEECCSGGGG-------GG---HH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE-EEEEEEECCEEEEEEEEeCCCcHHhh-------hh---hH
Confidence 358999999999999999999997553222211122222 22233344 4688999999964321 11 12
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++....-.....++..+..... ...++++|.||+|+..
T Consensus 74 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 74 MYYR--GAQAAIVVYDITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLAN 125 (170)
T ss_dssp HHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred Hhcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccCcc
Confidence 2233 48999999887642210111223344444322 2468899999999854
No 75
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.12 E-value=3.3e-10 Score=112.96 Aligned_cols=118 Identities=11% Similarity=0.064 Sum_probs=74.5
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
.+..++|+|+|.+|||||||+|.|++..... .+ ..|...........+..+.||||||.... .....
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~ 85 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNE--DM-IPTVGFNMRKITKGNVTIKLWDIGGQPRF----------RSMWE 85 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCC--SC-CCCCSEEEEEEEETTEEEEEEEECCSHHH----------HTTHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCC--cc-CCCCceeEEEEEeCCEEEEEEECCCCHhH----------HHHHH
Confidence 3456899999999999999999999765321 11 11222222335577899999999996321 11122
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|+++||++++.... ...+..++...... ....|+++|+||+|+..
T Consensus 86 ~~~~--~~d~ii~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (188)
T 1zd9_A 86 RYCR--GVSAIVYMVDAADQEK---IEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138 (188)
T ss_dssp HHHT--TCSEEEEEEETTCGGG---HHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHc--cCCEEEEEEECCCHHH---HHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc
Confidence 3333 4899999988764321 12223333333221 12478999999999854
No 76
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.12 E-value=1.7e-10 Score=112.33 Aligned_cols=116 Identities=14% Similarity=0.175 Sum_probs=75.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
....++|+|+|.+|||||||+|+|++.... .... ++++ .+......+++.++.+|||||....... .
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--~-------- 72 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVT-EQEA-GGITQHIGAYQVTVNDKKITFLDTPGHEAFTTM--R-------- 72 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSS-CSSC-CSSSTTCCCCEEEETTEEEEESCCCSSSSSSCS--C--------
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccc-cCCC-CceeEeeeEEEEEeCCceEEEEECCCCHHHHHH--H--------
Confidence 346789999999999999999999987642 2222 3332 2333455678999999999997553210 0
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...+ ..+|++++|++++.... ...++.+..... ...|+++|+||+|+..
T Consensus 73 ~~~~--~~~d~~i~v~d~~~~~~----~~~~~~l~~~~~--~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 73 ARGA--QVTDIVILVVAADDGVM----PQTVEAINHAKA--ANVPIIVAINKMDKPE 121 (178)
T ss_dssp CSSC--CCCCEEEEEEETTCCCC----HHHHHHHHHHGG--GSCCEEEEEETTTSSC
T ss_pred HHHH--hhCCEEEEEEECCCCCc----HHHHHHHHHHHh--CCCCEEEEEECccCCc
Confidence 0112 25899999987665321 222333333221 1478999999999854
No 77
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.12 E-value=3.4e-10 Score=114.01 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=69.5
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEE--ECCEEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGL--VHGVKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~--i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
....++|+|+|.+|||||||+|+|++..... .+.+.+......... ..+..+.||||||.......
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------- 88 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSE--GYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL---------- 88 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCS--CCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC----------
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEECCEEEEEEEEECCCccchHHH----------
Confidence 3457899999999999999999999876432 221222211122222 34578899999997553210
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++++|++++....-..-..++..+..... ....|+++|+||+|+..
T Consensus 89 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 143 (201)
T 3oes_A 89 PYSFII--GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSP 143 (201)
T ss_dssp CGGGTT--TCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGG
T ss_pred HHHHHh--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCcc
Confidence 111222 48999999887642210011122333332211 12468999999999864
No 78
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.12 E-value=1.6e-10 Score=110.99 Aligned_cols=117 Identities=12% Similarity=0.103 Sum_probs=73.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCce-eEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT-SSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT-Trv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..++|+|+|.+|||||||+|+|++..... .+.+.+ .........+++ ..+.||||||...... . .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~-------~ 71 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTK--DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA---I-------T 71 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCC--CSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC---C-------C
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH---H-------H
Confidence 45899999999999999999999765321 111221 123334444555 5789999999643221 0 1
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++++|++++....-..-..++..+.... ...|+++|+||+|+..
T Consensus 72 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 123 (168)
T 1z2a_A 72 KAYYR--GAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLD 123 (168)
T ss_dssp HHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGG
T ss_pred HHHhc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCc
Confidence 12232 4899999988765321111223444454443 2478999999999864
No 79
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.12 E-value=1.3e-10 Score=115.58 Aligned_cols=120 Identities=13% Similarity=0.109 Sum_probs=75.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
...++|+|+|.+|||||||+|+|++...+... + ..|.........+++..+.||||||...... . ...
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~-------~~~ 86 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQN-I-LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRN---L-------WEH 86 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-C-CCCSSEEEEEEECSSCEEEEEEECCSTTTGG---G-------GGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCC-c-CCccceeEEEEEECCEEEEEEECCCCHHHHH---H-------HHH
Confidence 45689999999999999999999987633322 2 2233344555667889999999999754221 0 112
Q ss_pred HHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCC-CCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGS-SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~-~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|++++... +.. -...+..+...... ....++++|+||+|+..
T Consensus 87 ~~~--~~d~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 87 YYK--EGQAIIFVIDSSDRLRMVV-AKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp GGG--GCSEEEEEEETTCHHHHHH-HHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHh--cCCEEEEEEECCCHHHHHH-HHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 233 389999998776421 110 11223333322110 02479999999999854
No 80
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.12 E-value=7e-10 Score=109.84 Aligned_cols=118 Identities=15% Similarity=0.163 Sum_probs=69.4
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+|+|.+|||||||+|+|++.... ..+.+.+.........+++ ..+.||||||..... . ....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~---~~~~ 88 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------A---MRDQ 88 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHHH-------H---HHHH
Confidence 479999999999999999999976532 2222222223334455666 458899999964321 1 1122
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|++++....-.....++..+..... ....|+++|+||+|+..
T Consensus 89 ~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 89 YMR--TGEGFLCVFAINNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -CT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSC
T ss_pred hhC--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCc
Confidence 232 48999999877643211111223344443322 12478999999999864
No 81
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.11 E-value=3e-10 Score=110.38 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=72.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|+|++... ...+.+.+.........+++ ..+.||||||...... .. .
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---~~-------~ 75 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA---MR-------E 75 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC---CH-------H
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH---HH-------H
Confidence 458999999999999999999998742 23332333223334455666 4788999999754321 11 1
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++....-..-...+..+..... ....|+++|+||+|+..
T Consensus 76 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 128 (181)
T 2fn4_A 76 QYMR--AGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLES 128 (181)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGG
T ss_pred HHHh--hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccc
Confidence 1222 27999999877652210001123333322222 12468999999999854
No 82
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.11 E-value=2.5e-10 Score=127.13 Aligned_cols=125 Identities=19% Similarity=0.193 Sum_probs=75.0
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEE------------------------------------------
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVK------------------------------------------ 509 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~------------------------------------------ 509 (1109)
+|+|+|.+|+|||||+|+|+|......+.. ..|.+..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~lp~~~~-~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSG-IVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCCSCCCSS-SCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcCCCCCC-cccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 899999999999999999999765433321 1221100
Q ss_pred ------------EE-EEEECCEEEEEEeCCCCCCCCc---chhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcH
Q 036930 510 ------------VI-AGLVHGVKIRIFDTPGLRSPAI---GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDL 573 (1109)
Q Consensus 510 ------------e~-~~~i~G~~VtLIDTPGL~ds~~---~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~ 573 (1109)
.. .....+.+++||||||+..... .......+...+..++.. +|++|+|+........ ..
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~--~d~iilvv~~~~~~~~--~~ 190 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK--PNCIILAISPANQDLA--TS 190 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS--SSEEEEEEEETTSCGG--GC
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc--CCeEEEEeecccCCcC--CH
Confidence 00 0111245789999999987532 112334455555566654 8988888654332221 11
Q ss_pred HHHHHHHhhhCCCCCCeEEEEEeccCCCCC
Q 036930 574 PLLKSLTSSLGSSVWQNAILCLTHAASEPP 603 (1109)
Q Consensus 574 ~lLk~I~e~FG~~v~k~vIVVLTKaD~l~p 603 (1109)
..++.+... .. ...++|+|+||+|+..+
T Consensus 191 ~~~~l~~~~-~~-~~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 191 DAIKISREV-DP-SGDRTFGVLTKIDLMDK 218 (360)
T ss_dssp HHHHHHHHS-CT-TCTTEEEEEECGGGCCT
T ss_pred HHHHHHHHh-cc-cCCCEEEEEeCCccCCC
Confidence 233333332 21 24689999999998754
No 83
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.11 E-value=1.3e-10 Score=112.08 Aligned_cols=118 Identities=16% Similarity=0.133 Sum_probs=69.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..++|+|+|.+|||||||+|+|++..... ... +.++ ........+++ ..+.+|||||...... ..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~ 72 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFND-KHI-TTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA----------LG 72 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCS-SCC-CCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCc-CCC-CccceEEEEEEEEECCEEEEEEEEECCCcHhhhh----------hH
Confidence 45899999999999999999999765321 111 2221 22333444555 4688999999643210 01
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++ ..+|++++|++++....-.....++..+...... ..|+++|+||+|+..
T Consensus 73 ~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 125 (170)
T 1z08_A 73 PIYY--RDSNGAILVYDITDEDSFQKVKNWVKELRKMLGN--EICLCIVGNKIDLEK 125 (170)
T ss_dssp CCSS--TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGG--GSEEEEEEECGGGGG
T ss_pred HHHh--ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECccccc
Confidence 1122 2589999998876422111112234444443322 378999999999854
No 84
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.11 E-value=4.3e-10 Score=111.60 Aligned_cols=116 Identities=11% Similarity=0.095 Sum_probs=72.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
+..++|+|+|.+|||||||+|+|++.....+.+. .+.+ .....+++..+.||||||...... . ...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t-~~~~---~~~~~~~~~~~~i~Dt~G~~~~~~---~-------~~~ 79 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IGSN---VEEIVINNTRFLMWDIGGQESLRS---S-------WNT 79 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECC-SCSS---CEEEEETTEEEEEEECCC----CG---G-------GHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCC-Cccc---eEEEEECCEEEEEEECCCCHhHHH---H-------HHH
Confidence 3468999999999999999999997654433221 1211 223446789999999999854221 1 112
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|++++.... -..+..++...... ....|+++|+||+|+..
T Consensus 80 ~~~--~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 80 YYT--NTEFVIVVVDSTDRER---ISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp HHT--TCCEEEEEEETTCTTT---HHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred Hhc--CCCEEEEEEeCCCHHH---HHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 233 4899999988765321 11222333333221 12479999999999853
No 85
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.11 E-value=2.9e-10 Score=109.79 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=67.1
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
++|+|+|.+|||||||+|+|++......... +.|.........+++ ..+.+|||||...... .+.. .+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~---~~ 72 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEM-ENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGG------WLQD---HC 72 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC--------------C---HH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccC-CCcCCeeeEEEEECCeEEEEEEEECCCccccch------hhhh---hh
Confidence 6899999999999999999997654333332 223334444455666 5677999999865321 0111 11
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+. .+|++++|.+++....-..-...+..+..... ....|+++|.||+|+..
T Consensus 73 ~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 73 LQ--TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR 123 (169)
T ss_dssp HH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCGG
T ss_pred hc--cCCEEEEEEECCChHHHHHHHHHHHHHHhccc-CCCCCEEEEeeCcchhh
Confidence 22 27999999888753211112233444443322 12479999999999853
No 86
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.11 E-value=4.3e-10 Score=112.25 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=73.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|+|++... ...+.+.+.........+++ ..+.||||||..... .+. .
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~---~ 80 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIR---D 80 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHH---H
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-------HHH---H
Confidence 458999999999999999999997663 22222222223334455666 478999999975421 111 1
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++....-.....++..+..... ....|+++|+||+|+..
T Consensus 81 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 133 (206)
T 2bov_A 81 NYFR--SGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLED 133 (206)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGG
T ss_pred HHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccc
Confidence 2233 27999999877642210011233344444332 22478999999999854
No 87
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.10 E-value=7.5e-11 Score=131.99 Aligned_cols=124 Identities=18% Similarity=0.163 Sum_probs=79.0
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-EEEEEEeCCCCCCCCcc-hhhhHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-VKIRIFDTPGLRSPAIG-RTVNKKTLASIR 546 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-~~VtLIDTPGL~ds~~~-~~~~eeIl~~Ik 546 (1109)
-.+|+|+|.+|||||||+|+|++... .+..+ +.||. +......+.+ ..++|+||||+.+.... .......++.+.
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~~-~i~~~-~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAKP-KIADY-HFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEECC-EESST-TSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCCC-ccccC-CccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 34799999999999999999998764 45565 55654 4444556664 89999999998652211 112233333332
Q ss_pred HHHhcCCCcEEEEEecCCCCC-CC-CCc-HHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHT-RD-HND-LPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t-~d-~eD-~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+|++|+|++++... .. ..+ ..++..+.........+|+++|+||+|+.
T Consensus 236 ------~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~ 287 (342)
T 1lnz_A 236 ------RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMP 287 (342)
T ss_dssp ------HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTST
T ss_pred ------hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCC
Confidence 279999998876521 11 111 22344444432222458999999999975
No 88
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.10 E-value=1.2e-10 Score=112.96 Aligned_cols=121 Identities=14% Similarity=0.098 Sum_probs=67.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|.|++.....+... ++++. ......+++ .++.+|||||...... ..+ ..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~---~~ 72 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQ-LGEDV-YERTLTVDGEDTTLVVVDTWEAEKLDK-----SWS---QE 72 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCC-SSSSE-EEEEEEETTEEEEEEEECCC------------CHH---HH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCc-cccce-eEEEEEECCEEEEEEEEecCCCCccch-----hhh---HH
Confidence 357999999999999999999998875444442 44443 233345666 4688999999854210 011 11
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|.+++....-.....++..+..... ....|+++|.||+|+..
T Consensus 73 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 73 SCLQ--GGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLAR 125 (175)
T ss_dssp HTTT--SCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTT
T ss_pred hhcc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhcc
Confidence 2222 47999999877642210001123333333211 12478999999999864
No 89
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.10 E-value=2.7e-10 Score=126.77 Aligned_cols=126 Identities=16% Similarity=0.201 Sum_probs=74.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcc-----eecCCCCceeEEEE---------------------------------
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKS-----TINAFEPATSSVKV--------------------------------- 510 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va-----~Vs~i~pgTTrv~e--------------------------------- 510 (1109)
...+|+|+|.+|||||||+|+|+|.... .++.. |+.++...
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~-p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRR-PLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCS-CEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCccccc-ceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 3469999999999999999999998754 22221 33111100
Q ss_pred -------------EEEE-ECCEEEEEEeCCCCCCCCc---chhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcH
Q 036930 511 -------------IAGL-VHGVKIRIFDTPGLRSPAI---GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDL 573 (1109)
Q Consensus 511 -------------~~~~-i~G~~VtLIDTPGL~ds~~---~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~ 573 (1109)
.... .++.+++||||||+..... .....+.+...+..++.. ..+++|+|++.+. .....+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iiL~v~~a~~-~~~~~~~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK-ENCLILAVSPANS-DLANSDA 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTS-TTEEEEEEEETTS-CGGGCHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcC-CCeEEEEEecCCC-ccchhHH
Confidence 0001 1247799999999986432 111122334444455543 3567777765543 2332333
Q ss_pred -HHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 574 -PLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 574 -~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+++.+.. ...++|+|+||+|+..
T Consensus 187 ~~i~~~~~~-----~~~~~i~V~NK~Dl~~ 211 (353)
T 2x2e_A 187 LKVAKEVDP-----QGQRTIGVITKLDLMD 211 (353)
T ss_dssp HHHHHHHCT-----TCTTEEEEEECGGGSC
T ss_pred HHHHHHhCc-----CCCceEEEeccccccC
Confidence 23333321 2479999999999865
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.10 E-value=1.4e-10 Score=111.44 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=71.6
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK 550 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk 550 (1109)
++|+|+|.+|||||||+|+|++..... ..| |.........+.+..+.||||||.... ..+ ...++.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~---~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~---~~~~~~ 66 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT---TIP-TIGFNVETVEYKNISFTVWDVGGQDKI-------RPL---WRHYFQ 66 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC---CCC-CSSCCEEEEECSSCEEEEEECCCCGGG-------HHH---HHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc---ccC-cCceeEEEEEECCEEEEEEEcCCChhh-------HHH---HHHHhc
Confidence 589999999999999999998755321 112 222223344567899999999998431 111 222333
Q ss_pred cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 551 KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 551 ~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
.+|++++|++++.... -..+..++...... ....|+++|.||+|+..
T Consensus 67 --~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (164)
T 1r8s_A 67 --NTQGLIFVVDSNDRER---VNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115 (164)
T ss_dssp --TCSEEEEEEETTCGGG---HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred --cCCEEEEEEECCCHHH---HHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC
Confidence 5899999988765321 11223333333221 12479999999999854
No 91
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.10 E-value=5.1e-11 Score=118.91 Aligned_cols=124 Identities=14% Similarity=0.132 Sum_probs=75.3
Q ss_pred cccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHH
Q 036930 465 DDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLA 543 (1109)
Q Consensus 465 e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~ 543 (1109)
...+..++|+|+|.+|||||||+|+|++...........+++. .........+..+.||||||... ...
T Consensus 18 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~ 87 (191)
T 3dz8_A 18 GNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER----------YRT 87 (191)
T ss_dssp TEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHH----------CHH
T ss_pred cccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHH----------HHH
Confidence 3456679999999999999999999997653211110112221 22222233468899999999421 111
Q ss_pred HHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 544 SIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 544 ~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
....++. .+|++++|++++....-..-..++..+..... ...|+++|.||+|+..
T Consensus 88 ~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 142 (191)
T 3dz8_A 88 ITTAYYR--GAMGFILMYDITNEESFNAVQDWATQIKTYSW--DNAQVILVGNKCDMEE 142 (191)
T ss_dssp HHHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred HHHHHHc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence 1223333 48999999887743211112334555554332 2479999999999853
No 92
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.10 E-value=1.4e-10 Score=117.24 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=71.4
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHH
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLA 543 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~ 543 (1109)
..+..++|+|+|.+|||||||+|+|++........ ...+.........+++ ..+.||||||......
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~---------- 89 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN-HTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS---------- 89 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC----------
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCC-CcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH----------
Confidence 34566899999999999999999999865432211 1112223344455666 6899999999532110
Q ss_pred HHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 544 SIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 544 ~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
....++. .+|++++|++++....-..-..++..+..... ...|+++|+||+|+..
T Consensus 90 ~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~ 144 (200)
T 2o52_A 90 VTRSYYR--GAAGALLVYDITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDP 144 (200)
T ss_dssp CCHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGG
T ss_pred HHHHHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccc
Confidence 0112233 48999999887653211112233444444322 2478999999999853
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.10 E-value=5.4e-10 Score=110.52 Aligned_cols=117 Identities=10% Similarity=0.072 Sum_probs=74.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
....++|+|+|.+|||||||+|+|++.....+... .+++. ....+++..+.||||||...... . ..
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t-~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~---~-------~~ 83 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-IGSNV---EEIVINNTRFLMWDIGGQESLRS---S-------WN 83 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECC-SSSSC---EEEEETTEEEEEEEESSSGGGTC---G-------GG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCc-Cceee---EEEEECCEEEEEEECCCCHhHHH---H-------HH
Confidence 34568999999999999999999998775443332 23221 23445889999999999854221 0 11
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++.... -..+..++...... ....++++|+||+|+..
T Consensus 84 ~~~~--~~d~ii~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 84 TYYT--NTEFVIVVVDSTDRER---ISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp GGGT--TCCEEEEEEETTCTTT---HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHhc--cCCEEEEEEECCCHHH---HHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 2232 4899999988765321 12233333333221 13479999999999854
No 94
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.10 E-value=6.9e-10 Score=111.75 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=73.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCc-eeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPA-TSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pg-TTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
+..++|+|+|.+|||||||+|+|++..... .. .+. +.........+++ ..+.||||||.......
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---------- 73 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTN-DY-ISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI---------- 73 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCT-TC-CCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-CC-CCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH----------
Confidence 446899999999999999999999865421 11 122 2223334455666 47999999997543210
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++|||++++....-..-..++..+..... ...++++|+||+|+..
T Consensus 74 ~~~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 74 TSSYYR--GSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT--STVLKLLVGNKCDLKD 127 (206)
T ss_dssp CGGGGT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECTTCTT
T ss_pred HHHhcc--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence 111222 48999999887653211111223444444322 2478999999999864
No 95
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.09 E-value=1.6e-10 Score=115.20 Aligned_cols=121 Identities=19% Similarity=0.170 Sum_probs=50.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEEEEEECC----EEEEEEeCCCCCCCCcchhhhHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVIAGLVHG----VKIRIFDTPGLRSPAIGRTVNKKTL 542 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~~~~i~G----~~VtLIDTPGL~ds~~~~~~~eeIl 542 (1109)
..++|+|+|.+|||||||+|+|++........+ ..|+. .......+++ ..+.||||||... ..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~ 87 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDY-AMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL----------YK 87 (208)
T ss_dssp EEEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHH----------HH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCC-CCccceEEEEEEEEECCcccEEEEEEEECCCcHH----------HH
Confidence 458999999999999999999998743223333 33332 3334455564 5899999999832 11
Q ss_pred HHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC-CCCCeEEEEEeccCCCC
Q 036930 543 ASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS-SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 543 ~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~-~v~k~vIVVLTKaD~l~ 602 (1109)
.....++ ..+|++++|++++....-.....++..+...... ....|+++|+||+|+..
T Consensus 88 ~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 88 EQISQYW--NGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHHSTTC--CCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHHH--hhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 1122222 2589999998876432111112344444443220 12479999999999854
No 96
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.09 E-value=1.6e-10 Score=116.23 Aligned_cols=118 Identities=17% Similarity=0.178 Sum_probs=68.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcce-ecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKST-INAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~-Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
...++|+|+|.+|||||||+|+|++..... .... .+++ .......+++ ..+.||||||..... .+
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~--- 93 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISAT-LGVD-FQMKTLIVDGERTVLQLWDTAGQERFR-------SI--- 93 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCTTCH-------HH---
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCC-ccce-eEEEEEEECCEEEEEEEEECCCCcchh-------hh---
Confidence 346899999999999999999999765321 1111 1211 2223344555 568999999974321 11
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
...++. .+|++++|++++....-.....++..+..... ...|+++|+||+|+.
T Consensus 94 ~~~~~~--~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 94 AKSYFR--KADGVLLLYDVTCEKSFLNIREWVDMIEDAAH--ETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred HHHHHh--hCCEEEEEEECCChHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccc
Confidence 122233 27999999887643211112234444444322 137899999999975
No 97
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.09 E-value=2.9e-10 Score=113.86 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=73.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|+|++...... +.+.+.........+++ ..+.||||||... . ... .
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~------~~~----~ 93 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWE--YDPTLESTYRHQATIDDEVVSMEILDTAGQED-T------IQR----E 93 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-C------HHH----H
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCCCCceEEEEEEECCEEEEEEEEECCCCCc-c------cch----h
Confidence 468999999999999999999998654222 11222222233344555 6689999999865 1 111 1
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++....-..-..++..+..... ....|+++|+||+|+..
T Consensus 94 ~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~ 146 (196)
T 2atv_A 94 GHMR--WGEGFVLVYDITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDH 146 (196)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGG
T ss_pred hhhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECccccc
Confidence 2222 27999999887652211112233444444322 22478999999999854
No 98
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.09 E-value=1.6e-10 Score=117.42 Aligned_cols=121 Identities=16% Similarity=0.226 Sum_probs=73.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...++|+|+|.+|||||||+|+|++...........+++..........+ ..+.||||||...... ...
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~------ 79 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAV---LKD------ 79 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSC---CCH------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhch---HHH------
Confidence 34689999999999999999999976533221112333322222222223 7799999999754321 111
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++|+|++++..........++..+...... ..++++|+||+|+..
T Consensus 80 -~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 131 (218)
T 4djt_A 80 -VYYI--GASGAILFFDVTSRITCQNLARWVKEFQAVVGN--EAPIVVCANKIDIKN 131 (218)
T ss_dssp -HHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS--SSCEEEEEECTTCC-
T ss_pred -HHhh--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCcc
Confidence 1222 489999998877532111123444555555432 378999999999854
No 99
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.09 E-value=3.5e-10 Score=110.82 Aligned_cols=116 Identities=19% Similarity=0.135 Sum_probs=72.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
...++|+|+|.+|||||||+|+|++.......+. .+.+ .....+++..+.+|||||...... . ...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t-~~~~---~~~~~~~~~~~~i~Dt~G~~~~~~--~--------~~~ 81 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPT-IGFN---VETLSYKNLKLNVWDLGGQTSIRP--Y--------WRC 81 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSS-TTCC---EEEEEETTEEEEEEEEC----CCT--T--------GGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCc-Cccc---eEEEEECCEEEEEEECCCCHhHHH--H--------HHH
Confidence 4578999999999999999999997655333331 2221 233456789999999999865321 0 011
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|++++.... -..+..++...... ....|+++|+||+|+..
T Consensus 82 ~~~--~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 82 YYA--DTAAVIFVVDSTDKDR---MSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp TTT--TEEEEEEEEETTCTTT---HHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred Hhc--cCCEEEEEEECCCHHH---HHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 222 4899999988764321 12233444444322 23579999999999854
No 100
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.09 E-value=2.8e-10 Score=113.06 Aligned_cols=119 Identities=17% Similarity=0.139 Sum_probs=72.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
-....+|+|+|.+|||||||+|.|++.....+. + ..|...........+..+.||||||...... ...
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~~ 81 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKH-I-TATVGYNVETFEKGRVAFTVFDMGGAKKFRG----------LWE 81 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----C-C-CCCSSEEEEEEEETTEEEEEEEECCSGGGGG----------GGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccc-c-ccccceeEEEEEeCCEEEEEEECCCCHhHHH----------HHH
Confidence 345679999999999999999999987754422 1 1122233334457889999999999854221 011
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC---------CCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS---------SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~---------~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++|||++++.... ...+..++...+.. ....++|+|.||+|+..
T Consensus 82 ~~~~--~~d~ii~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 141 (199)
T 4bas_A 82 TYYD--NIDAVIFVVDSSDHLR---LCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG 141 (199)
T ss_dssp GGCT--TCSEEEEEEETTCGGG---HHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred HHHh--cCCEEEEEEECCcHHH---HHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence 2222 5899999988775321 11222333332221 01479999999999864
No 101
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.08 E-value=2.4e-10 Score=124.96 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=77.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEE-CCEEEEEEeCCCCCCCCcchhhhHHHH-HHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLV-HGVKIRIFDTPGLRSPAIGRTVNKKTL-ASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i-~G~~VtLIDTPGL~ds~~~~~~~eeIl-~~I 545 (1109)
..++|+|+|.+|||||||+|.|++.....++.. +++|. +......+ ++.++.||||||.... ..... ...
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~-~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~ 74 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRR-LGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQK 74 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGG-CCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccC-cCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHH
Confidence 357999999999999999999998755455543 45544 54444554 5789999999997431 01111 111
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcH-HHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDL-PLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~-~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..+++ ++|++++|++++....- .+. .+.+++..........|+++|.||+|+..
T Consensus 75 ~~~~~--~ad~vi~V~D~t~~~s~-~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 75 DHIFQ--MVQVLIHVFDVESTEVL-KDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHHT--TCSEEEEEEETTCSCHH-HHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHHhc--cCCEEEEEEECCChhhH-HHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 22333 58999999887653211 111 22333333221122479999999999854
No 102
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.08 E-value=1.5e-10 Score=125.40 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=77.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
.++|+|+|.+|||||||+|+|+|... .++.+ |++|. ........ +..+.||||||........ ..+.+. +.+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~-pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~-~~e~v~---~~~ 75 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNW-PGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYS-PEAKVA---RDY 75 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSS-SCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSS-HHHHHH---HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCC-CCCcEEEEEEEEec-CCeEEEEECCCcCccCCCC-hHHHHH---HHH
Confidence 47999999999999999999999763 56776 67665 33333333 7789999999987643111 112222 223
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+....+|++++|++++... ....+...+.+. ..|+++|+||+|+..
T Consensus 76 ~~~~~~d~vi~V~D~t~~e---~~~~~~~~l~~~-----~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 76 LLSQRADSILNVVDATNLE---RNLYLTTQLIET-----GIPVTIALNMIDVLD 121 (272)
T ss_dssp HHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT-----CSCEEEEEECHHHHH
T ss_pred HhcCCCCEEEEEecCCchH---hHHHHHHHHHhc-----CCCEEEEEEChhhCC
Confidence 3333699999997765421 122333334331 479999999999753
No 103
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.07 E-value=1.1e-10 Score=138.24 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=78.5
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcc--eecCCCCceeEEEEEEE-------------------------------
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKS--TINAFEPATSSVKVIAG------------------------------- 513 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va--~Vs~i~pgTTrv~e~~~------------------------------- 513 (1109)
.....+|+|+|.+|+|||||+|+|+|.... .++.. |.|++......
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~-p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPE-PTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSS-CCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCC-CccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 345679999999999999999999998865 45553 66655321111
Q ss_pred ------EECC---EEEEEEeCCCCCCCCcch-hhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhh
Q 036930 514 ------LVHG---VKIRIFDTPGLRSPAIGR-TVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSL 583 (1109)
Q Consensus 514 ------~i~G---~~VtLIDTPGL~ds~~~~-~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~F 583 (1109)
.+.+ ..++||||||+.+..... .........+..++.. +|+||||++++.......+..+++.+..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~--aD~il~VvDa~~~~~~~~~~~~l~~l~~-- 216 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAER--VDLIILLFDAHKLEISDEFSEAIGALRG-- 216 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHH--CSEEEEEEETTSCCCCHHHHHHHHHTTT--
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHh--CCEEEEEEeCCcCCCCHHHHHHHHHHHh--
Confidence 0000 368999999997632100 0000011222333433 8999999887654443334445544432
Q ss_pred CCCCCCeEEEEEeccCCCC
Q 036930 584 GSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 584 G~~v~k~vIVVLTKaD~l~ 602 (1109)
...++++|+||+|+..
T Consensus 217 ---~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 217 ---HEDKIRVVLNKADMVE 232 (550)
T ss_dssp ---CGGGEEEEEECGGGSC
T ss_pred ---cCCCEEEEEECCCccC
Confidence 2468999999999864
No 104
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.07 E-value=3.2e-10 Score=113.07 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=74.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
....++|+|+|.+|||||||+|.|++......... ..++........+++ ..+.||||||...... .
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~------- 86 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS---I------- 86 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC---C-------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCC-cccceeEEEEEEECCEEEEEEEEECCCchhhhh---h-------
Confidence 34568999999999999999999998654332221 112223333445565 5789999999644221 0
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++++|++++....-..-..++..+..... ...++++|+||+|+..
T Consensus 87 ~~~~~~--~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 87 TRSYYR--GAAGALLVYDITRRETFNHLTSWLEDARQHSS--SNMVIMLIGNKSDLES 140 (191)
T ss_dssp CHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred HHHHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCC
Confidence 112233 48999999887653211112234444544322 2478999999999853
No 105
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.07 E-value=5e-10 Score=111.08 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=74.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..++|+|+|.+|||||||+|+|++.......+ |.........+++.++.+|||||....... ...+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~----------~~~~ 86 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP----TVGVNLETLQYKNISFEVWDLGGQTGVRPY----------WRCY 86 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECS----STTCCEEEEEETTEEEEEEEECCSSSSCCC----------CSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCC----CCceEEEEEEECCEEEEEEECCCCHhHHHH----------HHHH
Confidence 56899999999999999999998765433222 212223345567899999999998543210 0011
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
++ .+|++++|++++.... -..+..++...+.. ....|+++|+||+|+..
T Consensus 87 ~~--~~d~ii~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 87 FS--DTDAVIYVVDSTDRDR---MGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp ST--TCCEEEEEEETTCCTT---HHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred hh--cCCEEEEEEeCCCHHH---HHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 22 4899999988765321 12233334333322 12479999999999854
No 106
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.07 E-value=2.8e-10 Score=111.83 Aligned_cols=119 Identities=13% Similarity=0.190 Sum_probs=55.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
+..++|+|+|.+|||||||+|+|++... .... .+.++. .......+++ ..+.||||||...... .
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~-~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~ 73 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTF-ISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT----------I 73 (183)
T ss_dssp SEEEEEEEECCCCC-----------------CH-HHHHCEEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC-CCCC-CCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh----------h
Confidence 4568999999999999999999997542 2211 132222 3344555677 7899999999743210 0
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++++|++++....-..-..++..+..... ...|+++|.||+|+..
T Consensus 74 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 74 TTAYYR--GAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVND 127 (183)
T ss_dssp CCTTTT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCS
T ss_pred HHHHHh--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccCCc
Confidence 111222 48999999887652210111123344444322 2479999999999854
No 107
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.07 E-value=1.1e-09 Score=110.06 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=70.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..++|+|+|.+|||||||+|+|++....... | |.........+.+..+.||||||...... . ...+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~---~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~-------~~~~ 93 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTI---P-TIGFNVETVEYKNICFTVWDVGGQDKIRP---L-------WRHY 93 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEE---E-ETTEEEEEEEETTEEEEEEECC-----CT---T-------HHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccC---C-cCceeEEEEEECCEEEEEEECCCCHhHHH---H-------HHHH
Confidence 4689999999999999999999876542211 1 22233444566889999999999854221 0 1122
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
+. .+|++++|++++.... -..+..++...... ....|+++|+||+|+..
T Consensus 94 ~~--~~d~iilv~D~~~~~s---~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 94 FQ--NTQGLIFVVDSNDRER---VQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp HH--TCCEEEEEEETTCGGG---HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred hc--cCCEEEEEEECCCHHH---HHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 33 4899999988764321 11222333333221 12479999999999853
No 108
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.07 E-value=1.3e-09 Score=108.53 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=74.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
...++|+|+|.+|||||||+|.|++.....+.+. .++ ......+++.++.+|||||.... ... ...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t-~g~---~~~~~~~~~~~l~i~Dt~G~~~~-------~~~---~~~ 79 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPT-QGF---NIKSVQSQGFKLNVWDIGGQRKI-------RPY---WRS 79 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEE-TTE---EEEEEEETTEEEEEEECSSCGGG-------HHH---HHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCc-CCe---EEEEEEECCEEEEEEECCCCHHH-------HHH---HHH
Confidence 3568999999999999999999998765433332 222 22344567999999999997431 111 222
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|++++.... -..+..++...+.. ....|+++|.||+|+..
T Consensus 80 ~~~--~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (181)
T 1fzq_A 80 YFE--NTDILIYVIDSADRKR---FEETGQELTELLEEEKLSCVPVLIFANKQDLLT 131 (181)
T ss_dssp HHT--TCSEEEEEEETTCGGG---HHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT
T ss_pred HhC--CCCEEEEEEECcCHHH---HHHHHHHHHHHHhChhhcCCCEEEEEECcCccc
Confidence 333 4899999987764321 11222333333221 12478999999999854
No 109
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.05 E-value=1.8e-10 Score=111.96 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=68.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCce-eEEEEEEEEEC---CEEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT-SSVKVIAGLVH---GVKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT-Trv~e~~~~i~---G~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
..++|+|+|.+|||||||+|+|++..... .+.+.+ .........++ ...+.||||||..... ..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~ 74 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQ--QYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ----------SL 74 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCT--TC---CCCSCEEEEECCSSSCCEEEEEECCC------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh----------hh
Confidence 45899999999999999999999865321 111221 11223333444 3689999999953311 01
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhC--CCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLG--SSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG--~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++++|++++....-..-..++..+..... .....|+++|+||+|+..
T Consensus 75 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 75 GVAFYR--GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp --CCST--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred hHHHhh--cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 112222 58999999887653211112234444444332 113479999999999853
No 110
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.05 E-value=7.4e-10 Score=112.42 Aligned_cols=120 Identities=16% Similarity=0.197 Sum_probs=71.5
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEEC------------CEEEEEEeCCCCCCCC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVH------------GVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~------------G~~VtLIDTPGL~ds~ 532 (1109)
..+..++|+|+|.+|||||||+|+|++.... . .+.+.+. ........++ ...+.||||||...
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-- 96 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFN-P-KFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER-- 96 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCC-C-EEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH--
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCC-c-CCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh--
Confidence 3455689999999999999999999986531 1 1101111 1112222333 46799999999421
Q ss_pred cchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC--CCCeEEEEEeccCCCC
Q 036930 533 IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS--VWQNAILCLTHAASEP 602 (1109)
Q Consensus 533 ~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~--v~k~vIVVLTKaD~l~ 602 (1109)
.......++. .+|++|||++++.... ...+..++....... ...|+++|+||+|+..
T Consensus 97 --------~~~~~~~~~~--~~d~iilV~D~~~~~s---~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 97 --------FRSLTTAFFR--DAMGFLLMFDLTSQQS---FLNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp --------HHHHHHHHHT--TCCEEEEEEETTCHHH---HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred --------HHhHHHHHhc--CCCEEEEEEECcCHHH---HHHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 1112233343 4899999987764211 112233343332211 3478999999999854
No 111
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.05 E-value=2.3e-10 Score=111.46 Aligned_cols=120 Identities=18% Similarity=0.124 Sum_probs=71.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCce-eEEEEEEEEECC---EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT-SSVKVIAGLVHG---VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT-Trv~e~~~~i~G---~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
..++|+|+|.+|||||||+|.|++..... .+.+.+ .........+.+ .++.||||||...... .
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---~------- 72 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGK--QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK---M------- 72 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTH--HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT---T-------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCC--CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccc---h-------
Confidence 45899999999999999999999765321 111111 113334455555 7899999999754221 0
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC-CCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS-SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~-~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++++|++++....-..-..++..+...... ....++++|.||+|+..
T Consensus 73 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 73 LDKYIY--GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp HHHHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred hhHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 112233 489999998876532111112334444432211 01234789999999853
No 112
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.04 E-value=1.3e-10 Score=133.64 Aligned_cols=121 Identities=20% Similarity=0.285 Sum_probs=76.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCE-EEEEEeCCCCCCCCc-chhhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGV-KIRIFDTPGLRSPAI-GRTVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~-~VtLIDTPGL~ds~~-~~~~~eeIl~~ 544 (1109)
...++|+|+|.+|+|||||+|+|++.....++.. ++||. .......+.+. ++.||||||+.+... .......
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~-~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~---- 106 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDY-AGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEK---- 106 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHH----
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCC-CCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHH----
Confidence 3457999999999999999999999887666664 55554 55556666665 999999999976431 1111122
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPP 603 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~p 603 (1109)
...++. .+|++|+|+++ +....+..+++.+.+. ..|+|+|+||+|+...
T Consensus 107 ~~~~l~--~aD~vllVvD~---~~~~~~~~~l~~l~~~-----~~piIvV~NK~Dl~~~ 155 (423)
T 3qq5_A 107 ARRVFY--RADCGILVTDS---APTPYEDDVVNLFKEM-----EIPFVVVVNKIDVLGE 155 (423)
T ss_dssp HHHHHT--SCSEEEEECSS---SCCHHHHHHHHHHHHT-----TCCEEEECCCCTTTTC
T ss_pred HHHHHh--cCCEEEEEEeC---CChHHHHHHHHHHHhc-----CCCEEEEEeCcCCCCc
Confidence 223333 48999999766 3333355666666654 4799999999998653
No 113
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.03 E-value=2.9e-10 Score=127.61 Aligned_cols=128 Identities=20% Similarity=0.289 Sum_probs=63.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCC------CceeEEE--EEEEEECCE--EEEEEeCCCCCCCCcch---
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFE------PATSSVK--VIAGLVHGV--KIRIFDTPGLRSPAIGR--- 535 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~------pgTTrv~--e~~~~i~G~--~VtLIDTPGL~ds~~~~--- 535 (1109)
..++|+|+|++|+|||||+|+|++...+..+... ..|..+. .......+. .+.||||||+.+.....
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4589999999999999999999988765433210 0122221 222233454 78999999997643211
Q ss_pred -hhhHHHHHHHHHHH-----------hcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 536 -TVNKKTLASIRKSI-----------KKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 536 -~~~eeIl~~Ikk~L-----------k~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.....+......++ ...++|+++|++......+...+..+++.+ . ...|+|+|+||+|+..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~--~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----H--NKVNIVPVIAKADTLT 188 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----C--S-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----c--cCCCEEEEEECCCCCC
Confidence 11111111111222 223467888886543444443333344433 2 2478999999999864
No 114
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.03 E-value=6.1e-10 Score=112.85 Aligned_cols=122 Identities=13% Similarity=0.196 Sum_probs=73.6
Q ss_pred cccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHH
Q 036930 465 DDMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 465 e~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
+.....++|+|+|.+|||||||+|.|++..... ...+... ........+++ ..+.||||||.... ..+
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~ 94 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSE--RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF-------RTI 94 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEETTEEEEEEEECCTTCGGG-------HHH
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCC--CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH-------HHH
Confidence 344556899999999999999999999765321 1111111 13334455666 58999999997431 111
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++++|++++....-..-..++..+..... ...|+++|.||+|+..
T Consensus 95 ---~~~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 95 ---TQSYYR--SANGAILAYDITKRSSFLSVPHWIEDVRKYAG--SNIVQLLIGNKSDLSE 148 (201)
T ss_dssp ---HHHHHT--TCSEEEEEEETTBHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGG
T ss_pred ---HHHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCcccc
Confidence 223333 48999999887642111112234455554432 2478999999999854
No 115
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.03 E-value=4.1e-10 Score=112.73 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=73.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCce-eEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPAT-SSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgT-Trv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..++|+|+|.+|||||||+|+|++..... .+.+.+ .........+++ ..+.||||||....... .
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------~ 74 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSN--QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL----------G 74 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCS--SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS----------C
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh----------H
Confidence 45899999999999999999999876422 111222 223344445555 67899999996432210 0
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC--CCCeEEEEEeccCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS--VWQNAILCLTHAASE 601 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~--v~k~vIVVLTKaD~l 601 (1109)
..++. .+|++|+|++++....-..-..++..+....... ...|+++|+||+|+.
T Consensus 75 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 75 VAFYR--GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp CGGGT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred HHHHh--CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 11222 4899999988764321111123344444433211 246899999999986
No 116
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.03 E-value=8.8e-10 Score=111.61 Aligned_cols=117 Identities=12% Similarity=0.117 Sum_probs=70.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC---CEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH---GVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~---G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..++|+|+|.+|||||||+|.|++... ...+ +.|+. ......++ +..+.||||||.... ...+ .
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~-~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~------~~~~---~ 72 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQ-TSITD-SSAIYKVNNNRGNSLTLIDLPGHESL------RFQL---L 72 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBC-CCCSC-EEEEEECSSTTCCEEEEEECCCCHHH------HHHH---H
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--cccc-CCcce-eeEEEEecCCCccEEEEEECCCChhH------HHHH---H
Confidence 458999999999999999999997652 2222 22222 22235555 688999999998421 0101 2
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhh----CCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSL----GSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~F----G~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|+++||++++... .....+.+.+...+ ......|+++|.||+|+..
T Consensus 73 ~~~~~--~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 129 (214)
T 2fh5_B 73 DRFKS--SARAVVFVVDSAAFQ--REVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 129 (214)
T ss_dssp HHHGG--GEEEEEEEEETTTHH--HHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred HHHHh--hCCEEEEEEECCCcC--HHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC
Confidence 22333 489999998776411 11122333333221 1123479999999999864
No 117
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.02 E-value=4.4e-10 Score=109.92 Aligned_cols=113 Identities=23% Similarity=0.151 Sum_probs=69.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|.|++..... +.|.+.........+++ ..+.||||||... .
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~---- 67 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----------A---- 67 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----------H----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----------h----
Confidence 45899999999999999999999765432 11211112233445566 5678999999743 0
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC-CCCCeEEEEEeccCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS-SVWQNAILCLTHAASE 601 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~-~v~k~vIVVLTKaD~l 601 (1109)
.+++ .+|++++|.+++....-..-..+++++...... ....|+++|.||+|+.
T Consensus 68 ~~~~--~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 68 KFSG--WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp HHHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred HHHH--hCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 1222 279999998876432100011222234443221 1247999999999984
No 118
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.02 E-value=5.3e-10 Score=111.95 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=70.4
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHH
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTL 542 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl 542 (1109)
.....++|+|+|.+|||||||+|.|++... ...+ ..|+. .......+++. .+.||||||......-
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~-~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------- 84 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGY--PTEY-IPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL-------- 84 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS--------
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCC--CCCC-CCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH--------
Confidence 345678999999999999999999998652 2232 23332 33444556774 5669999998653210
Q ss_pred HHHHHHHhcCCCcEEEEEecCCCCCCCCCcH--HHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 543 ASIRKSIKKFPPDVVLYVDRLDTHTRDHNDL--PLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 543 ~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~--~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++++|++++....- .+. .++..+..... ..|+++|.||+|+..
T Consensus 85 --~~~~~~--~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 85 --RPLCYT--NTDIFLLCFSVVSPSSF-QNVSEKWVPEIRCHCP---KAPIILVGTQSDLRE 138 (201)
T ss_dssp --GGGGGT--TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHCS---SSCEEEEEECGGGGG
T ss_pred --hHhhcC--CCcEEEEEEECCCHHHH-HHHHHHHHHHHHHhCC---CCCEEEEEECHhhhh
Confidence 011222 48999999887642210 011 23444444432 479999999999854
No 119
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.01 E-value=5.5e-10 Score=112.28 Aligned_cols=125 Identities=14% Similarity=0.077 Sum_probs=73.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEE-ECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGL-VHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~-i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
...++|+|+|.+|||||||+|.|++............|+........ .....+.||||||....... ... ..
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--~~~-----~~ 90 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP--TFD-----YE 90 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT--TCC-----HH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh--hhh-----cc
Confidence 45689999999999999999999986543322111122222111111 23478999999997542210 000 01
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+++ ++|++|+|++++.. .......+..++..........++++|.||+|+..
T Consensus 91 ~~~~--~~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~ 143 (196)
T 3llu_A 91 MIFR--GTGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLS 143 (196)
T ss_dssp HHHH--TCSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred cccc--cCCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCc
Confidence 2233 38999999887753 21112334444544321122579999999999864
No 120
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.01 E-value=1e-09 Score=110.67 Aligned_cols=128 Identities=14% Similarity=0.190 Sum_probs=69.0
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCC-cceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEE-KSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~-va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
.+..+.+|+|+|++|||||||+|.|+|.. ...+.+. +++|.... ...+.+ .+.++||||+............+...
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~-~G~~~~~~-~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~ 98 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKT-PGRTQLIN-LFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRA 98 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEE-EEEEET-TEEEEECCCCC------CCHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCC-CccceeeE-EEEecC-CEEEEECcCCcccccCHHHHHHHHHH
Confidence 35567899999999999999999999976 3344443 56665322 223334 67899999986532211111122222
Q ss_pred HHHHHhc-CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKK-FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~-~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+..++.. ..++.+++|.++.... ...+..+.+++.. + ..++++|.||+|.+.
T Consensus 99 ~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~~~~~-~----~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 99 LGEYLEKRQSLQGLVVLMDIRHPL-KDLDQQMIEWAVD-S----NIAVLVLLTKADKLA 151 (210)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHHH-T----TCCEEEEEECGGGSC
T ss_pred HHHHHHhhhcccEEEEEEECCCCC-chhHHHHHHHHHH-c----CCCeEEEEecccCCC
Confidence 3333321 2468888887765421 1112234444432 2 367888999999753
No 121
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.00 E-value=6.9e-10 Score=113.40 Aligned_cols=121 Identities=14% Similarity=0.171 Sum_probs=74.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
....++|+|+|.+|||||||+|+|++... ........+.........+++ ..+.||||||.... .. .
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~---~ 91 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RS---I 91 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HH---H
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HH---H
Confidence 45568999999999999999999997643 211111112223344555666 57899999996321 11 1
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++++|++++....-..-...+..+..... ...++++|.||+|+..
T Consensus 92 ~~~~~~--~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 92 TQSYYR--SANALILTYDITCEESFRCLPEWLREIEQYAS--NKVITVLVGNKIDLAE 145 (201)
T ss_dssp HGGGST--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGG
T ss_pred HHHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcc
Confidence 122232 58999999887642211111234444444322 2478999999999853
No 122
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.00 E-value=1.6e-09 Score=110.05 Aligned_cols=117 Identities=12% Similarity=0.147 Sum_probs=70.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCccee-cCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTI-NAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~V-s~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
..++|+|+|++|||||||+|+|++...... ..+.+.++. .+.+..+.||||||..... ..+...++.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~l~Dt~G~~~~~------~~~~~~~~~ 78 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA------DYDGSGVTLVDFPGHVKLR------YKLSDYLKT 78 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET------TGGGSSCEEEECCCCGGGT------HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE------EeeCceEEEEECCCcHHHH------HHHHHHHHh
Confidence 468999999999999999999998653221 112222221 1156788999999995422 122222332
Q ss_pred HHhcCCCcEEEEEecCC-CCCCCCCcHHHHHHHHhhhC-----CCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLD-THTRDHNDLPLLKSLTSSLG-----SSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrld-s~t~d~eD~~lLk~I~e~FG-----~~v~k~vIVVLTKaD~l~ 602 (1109)
.+. .+|+++||++++ .... ...+..++...+. .....|+++|+||+|+..
T Consensus 79 ~~~--~~~~~i~v~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 79 RAK--FVKGLIFMVDSTVDPKK---LTTTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp HGG--GEEEEEEEEETTSCTTC---CHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred ccc--cCCEEEEEEECCCChHH---HHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 222 368999998876 2211 1222233332221 112478999999999865
No 123
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.00 E-value=3.5e-10 Score=115.57 Aligned_cols=120 Identities=13% Similarity=0.125 Sum_probs=74.6
Q ss_pred cCCCcEEEEEecCCCChhHHHHHH-hCCCcceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSI-FGEEKSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaL-LG~~va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
....++|+|+|.+|||||||+|++ .+.....+... .+++. .........+..+.||||||...... .
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~------- 80 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVAT-LGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG---L------- 80 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETT-TTEEEEEEEEEETTEEEEEEEEEECSGGGTSC---C-------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc-cceeEEEEEEEECCEEEEEEEEeCCChHHHhH---H-------
Confidence 345689999999999999999994 44434444443 45544 22322222347789999999643221 0
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++++|++++....-..-..++..+...+. ..|+++|.||+|+..
T Consensus 81 ~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 133 (221)
T 3gj0_A 81 RDGYYI--QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD 133 (221)
T ss_dssp CHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSS
T ss_pred HHHHHh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCcccc
Confidence 011222 48999999887753211112234455555432 478999999999854
No 124
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.99 E-value=1.7e-09 Score=109.60 Aligned_cols=115 Identities=12% Similarity=0.110 Sum_probs=68.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..++|+|+|.+|||||||+|+|++.......+. .+++ .....+++.++.+|||||...... . ...+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t-~~~~---~~~~~~~~~~l~i~Dt~G~~~~~~---~-------~~~~ 89 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-LHPT---SEELTIAGMTFTTFDLGGHIQARR---V-------WKNY 89 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CC-CCCS---CEEEEETTEEEEEEEECC----CC---G-------GGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCC-CCce---eEEEEECCEEEEEEECCCcHhhHH---H-------HHHH
Confidence 457999999999999999999998764332221 1222 234567889999999999754221 0 1122
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
+. .+|++++|++++.... -..+..++...... ....|+++|.||+|+..
T Consensus 90 ~~--~~d~~i~v~D~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 90 LP--AINGIVFLVDCADHER---LLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp GG--GCSEEEEEEETTCGGG---HHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred Hh--cCCEEEEEEECCCHHH---HHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 32 4899999988764321 11222333333221 12478999999999853
No 125
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.99 E-value=9e-10 Score=109.90 Aligned_cols=118 Identities=18% Similarity=0.136 Sum_probs=72.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...++|+|+|.+|||||||+|+|++... ...+.+.+.........+++. .+.||||||...... ..
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~ 88 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDR----------LR 88 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT----------TG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHH----------Hh
Confidence 4568999999999999999999998663 222222222223334456664 468999999643211 01
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCC-cHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHN-DLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~e-D~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++++|++++....-.. ...++..+..... ..|+++|.||+|+..
T Consensus 89 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 89 PLSYA--DSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID---TAKTVLVGLKVDLRK 141 (194)
T ss_dssp GGGCT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSEEEEEEECGGGCC
T ss_pred Hhhcc--CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 11222 4899999988765321000 1223344443322 479999999999864
No 126
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.99 E-value=3e-10 Score=129.46 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=43.9
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEE---------------------EEC---CEEEEEEeC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAG---------------------LVH---GVKIRIFDT 525 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~---------------------~i~---G~~VtLIDT 525 (1109)
++|+|+|.||||||||+|+|++.. +.++.+ |+||+ ...... .++ +.++.||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~-p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANY-PFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCC-CCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 589999999999999999999987 667775 77765 222221 123 268999999
Q ss_pred CCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCC
Q 036930 526 PGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDT 565 (1109)
Q Consensus 526 PGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds 565 (1109)
||+..... ..+.+.......+ ..+|++++|+++..
T Consensus 79 pG~~~~a~---~~~~l~~~~l~~i--~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 79 AGLVPGAH---EGRGLGNKFLDDL--RMASALIHVVDATG 113 (397)
T ss_dssp C------------------CCCSS--TTCSEEEEEEETTC
T ss_pred CCcccchh---hhhhHHHHHHHHH--hcCCEEEEEEeccc
Confidence 99975321 1111111111112 25899999988765
No 127
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.99 E-value=3.5e-09 Score=129.52 Aligned_cols=128 Identities=15% Similarity=0.145 Sum_probs=81.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEE---------------------------------------
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVK--------------------------------------- 509 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~--------------------------------------- 509 (1109)
.-.+|+|+|.+++|||||+|+|+|...+.++.. ++|.+..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 346999999999999999999999876544442 2332111
Q ss_pred ------------EEEE-EECCEEEEEEeCCCCCCCCc---chhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcH
Q 036930 510 ------------VIAG-LVHGVKIRIFDTPGLRSPAI---GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDL 573 (1109)
Q Consensus 510 ------------e~~~-~i~G~~VtLIDTPGL~ds~~---~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~ 573 (1109)
.... ..+..+++||||||+..... .......+...+..++. ..+|++|+|++.+. .....+.
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~-~~~~~d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANS-DLANSDA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTS-CSSSCHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCC-CcchhHH
Confidence 1111 11235689999999987431 11112344445556665 36899999977654 2333354
Q ss_pred -HHHHHHHhhhCCCCCCeEEEEEeccCCCCCC
Q 036930 574 -PLLKSLTSSLGSSVWQNAILCLTHAASEPPD 604 (1109)
Q Consensus 574 -~lLk~I~e~FG~~v~k~vIVVLTKaD~l~pd 604 (1109)
.+++.+... ..|+|+|+||+|+..+.
T Consensus 207 l~ll~~L~~~-----g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 207 LKIAKEVDPQ-----GQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHHHHHCTT-----CSSEEEEEECTTSSCTT
T ss_pred HHHHHHHHhc-----CCCEEEEEeCcccCCcc
Confidence 455555432 47999999999998643
No 128
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.99 E-value=9.2e-10 Score=110.57 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=72.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..++|+|+|.+|||||||+|.|++.....+.+ |.........+++.++.+|||||...... . ...+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~-------~~~~ 87 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQP----TWHPTSEELAIGNIKFTTFDLGGHIQARR---L-------WKDY 87 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCC----CCSCEEEEEEETTEEEEEEECCCSGGGTT---S-------GGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcccc----CCCCCeEEEEECCEEEEEEECCCCHHHHH---H-------HHHH
Confidence 45799999999999999999999866433222 21222345567889999999999854221 0 1112
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
+. .+|++++|++++.... -..+..++...... ....|+++|.||+|+..
T Consensus 88 ~~--~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 88 FP--EVNGIVFLVDAADPER---FDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp CT--TCCEEEEEEETTCGGG---HHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred Hh--cCCEEEEEEECCChHH---HHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 22 4899999988765321 11222333333221 12478999999999853
No 129
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.98 E-value=6e-10 Score=114.45 Aligned_cols=120 Identities=18% Similarity=0.129 Sum_probs=71.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...++|+|+|.+|||||||+|+|++......... ..+.........+++ ..+.||||||......- .
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~ 79 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKS-TIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI----------T 79 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC----------C
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCC-cccceeEEEEEEECCEEEEEEEEECCCccchhhh----------H
Confidence 4458999999999999999999998764322221 112223334445666 68899999997542210 0
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++|+|++++....-..-..++..+..... ...|++||+||+|+..
T Consensus 80 ~~~~~--~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 80 SAYYR--GAVGALIVYDISKSSSYENCNHWLSELRENAD--DNVAVGLIGNKSDLAH 132 (223)
T ss_dssp GGGTT--TCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred HHHhc--cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccc
Confidence 11222 48999999877642211111223444443322 2478999999999854
No 130
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.98 E-value=1.2e-10 Score=117.14 Aligned_cols=120 Identities=17% Similarity=0.222 Sum_probs=70.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCc-eeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPA-TSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pg-TTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
...++|+|+|.+|||||||+|+|++..... ... +. |.........+++ ..+.||||||.......
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---------- 98 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYI-STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI---------- 98 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHH-HHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCC-CcC-CcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH----------
Confidence 456899999999999999999999865422 111 22 2224445555666 57899999996543210
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPP 603 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~p 603 (1109)
...++. .+|++++|++++....-..-..++..+..... ...|+++|+||+|+...
T Consensus 99 ~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 99 TSSYYR--GAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp SCC--C--CCSEEEECC-CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--
T ss_pred HHHHhh--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCcc
Confidence 001222 48999999777642210001122333332221 24799999999998643
No 131
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.98 E-value=8.3e-10 Score=112.92 Aligned_cols=117 Identities=14% Similarity=0.126 Sum_probs=64.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|+|++.... ..+.+.+.........+++. .+.||||||..... .+ ..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~---~~ 100 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFP--ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD-------RL---RP 100 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCchhhh-------HH---HH
Confidence 4689999999999999999999986532 22222222222334456664 68899999964321 11 11
Q ss_pred HHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++... +......++..+.... ...|+++|.||+|+..
T Consensus 101 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 101 LFYP--DASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRK 152 (214)
T ss_dssp ------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGS
T ss_pred HHhc--cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhc
Confidence 2222 489999998876421 1100012334444432 2478999999999864
No 132
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.97 E-value=7.2e-10 Score=112.37 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=70.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+|+|.+|||||||+|+|++...... +.+.+.........+++ ..+.||||||....... ...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------~~~ 92 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEV--YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRL----------RPL 92 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTT----------GGG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCc--CCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHH----------HHh
Confidence 47999999999999999999998664321 21222222223345666 57889999997543210 011
Q ss_pred HHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++++|++++... +...+..++..+..... ..|+++|+||+|+..
T Consensus 93 ~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 143 (207)
T 2fv8_A 93 SYP--DTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP---NVPIILVANKKDLRS 143 (207)
T ss_dssp GCT--TCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGGG
T ss_pred hcC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEchhhhc
Confidence 222 489999998876531 11111234444444322 478999999999854
No 133
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.96 E-value=7.8e-10 Score=110.10 Aligned_cols=117 Identities=17% Similarity=0.113 Sum_probs=72.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|.|++... ...+.+.+.........+++ ..+.||||||......- ..
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~ 84 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL----------RP 84 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT----------GG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH----------HH
Confidence 458999999999999999999997642 12221222222233445555 67899999998653210 11
Q ss_pred HHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++... +......++..+..... ..|+++|.||+|+..
T Consensus 85 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 85 LSYP--MTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRD 136 (194)
T ss_dssp GGCT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTT
T ss_pred HhcC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhcc
Confidence 1222 489999998876432 11101123444544432 479999999999864
No 134
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.95 E-value=6.3e-09 Score=119.67 Aligned_cols=119 Identities=13% Similarity=0.104 Sum_probs=75.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecC-----------------------------CCCceeE-EEEEEEEECC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINA-----------------------------FEPATSS-VKVIAGLVHG 517 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~-----------------------------i~pgTTr-v~e~~~~i~G 517 (1109)
...++|+++|.+|+|||||+|.|++........ ...++|. +........+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 456899999999999999999997653221111 0134443 5556677789
Q ss_pred EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCC------CCCcHHHHHHHHhhhCCCCCCeE
Q 036930 518 VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTR------DHNDLPLLKSLTSSLGSSVWQNA 591 (1109)
Q Consensus 518 ~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~------d~eD~~lLk~I~e~FG~~v~k~v 591 (1109)
++++||||||..+. .+.....+. .+|++|+|++++.... .......+..+.. .+ .+++
T Consensus 95 ~~~~iiDTPGh~~f----------~~~~~~~~~--~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~---v~~i 158 (439)
T 3j2k_7 95 KHFTILDAPGHKSF----------VPNMIGGAS--QADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AG---VKHL 158 (439)
T ss_pred eEEEEEECCChHHH----------HHHHHhhHh--hCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cC---CCeE
Confidence 99999999997431 111222222 4899999988764321 0223334433332 22 2459
Q ss_pred EEEEeccCCCC
Q 036930 592 ILCLTHAASEP 602 (1109)
Q Consensus 592 IVVLTKaD~l~ 602 (1109)
|+|+||+|+..
T Consensus 159 IvviNK~Dl~~ 169 (439)
T 3j2k_7 159 IVLINKMDDPT 169 (439)
T ss_pred EEEeecCCCcc
Confidence 99999999853
No 135
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.94 E-value=1.2e-09 Score=109.19 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=69.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..++|+|+|.+|||||||+|.|++... ...+ ..|+. .......+++ ..+.||||||...... +
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~-~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~---- 85 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEY-DPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN-------C---- 85 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCC-CTTCCEEEEEEEEETTEEEEEEEEECCC---CCC-------T----
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--Cccc-CCCccceeeEEEEECCEEEEEEEEECCCCCcchh-------H----
Confidence 458999999999999999999997652 1222 22332 2223344555 5678999999754221 1
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC-CCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS-SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~-~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++++|.+++....-..-..++..+...... ....|+++|.||+|+..
T Consensus 86 ~~~~~--~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 86 ERYLN--WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp HHHHT--TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred HHHHh--hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 12333 389999998887422100011233344433210 12478999999999843
No 136
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.93 E-value=9.9e-10 Score=107.40 Aligned_cols=116 Identities=17% Similarity=0.128 Sum_probs=71.0
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.++|+|+|.+|||||||+|+|++.... ..+.+.+.........+++. .+.||||||...... + ...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~---~~~ 72 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-------L---RPL 72 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT-------T---GGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH-------H---HHH
Confidence 579999999999999999999965431 22212222223334455664 566999999854211 0 011
Q ss_pred HHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++ ..+|++++|++++... +......++..+..... ..|+++|+||+|+..
T Consensus 73 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 123 (186)
T 1mh1_A 73 SY--PQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 123 (186)
T ss_dssp GC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHT
T ss_pred hc--cCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEcccccc
Confidence 22 2489999998876422 11101124444544432 478999999999854
No 137
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.93 E-value=3.3e-09 Score=117.41 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=72.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKS 548 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~ 548 (1109)
..++|+|+|.+|||||||+|.|++.... ... | |...........+.++.||||||...... ....+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~--~~~-p-T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~~ 229 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIV--TTI-P-TIGFNVETVEYKNISFTVWDVGGQDKIRP----------LWRHY 229 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCE--EEE-E-ETTEEEEEEEETTEEEEEEECC-----CC----------SHHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCC--Ccc-c-ccceEEEEEecCcEEEEEEECCCCHhHHH----------HHHHH
Confidence 4579999999999999999999987632 221 2 33344555667899999999999533211 01223
Q ss_pred HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC--CCCeEEEEEeccCCCC
Q 036930 549 IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS--VWQNAILCLTHAASEP 602 (1109)
Q Consensus 549 Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~--v~k~vIVVLTKaD~l~ 602 (1109)
+. .+|++|+|++++.... ...+...+....... ...|+|||.||+|+..
T Consensus 230 ~~--~ad~vilV~D~~~~~s---~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 230 FQ--NTQGLIFVVDSNDRER---VNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp HT--TEEEEEEEEETTCSSS---HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred hc--cCCEEEEEEECCchHH---HHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 33 4899999988864321 112223333332221 2478999999999854
No 138
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.92 E-value=7.1e-10 Score=111.91 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=71.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|.|++..... .+.+.++........+++ ..+.||||||...... + ..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~---~~ 91 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE--VYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDR-------L---RP 91 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS--SCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTT-------T---GG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc--ccCCcccceEEEEEEECCEEEEEEEEECCCchhHHH-------H---HH
Confidence 35799999999999999999999765422 222332221122345565 4788999999643211 0 01
Q ss_pred HHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++... +......++..+..... ..|+++|+||+|+..
T Consensus 92 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 92 LSYP--DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP---NVPIILVGNKKDLRQ 143 (201)
T ss_dssp GGCT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECGGGTT
T ss_pred HhcC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEecHHhhc
Confidence 1222 489999998876521 11101223444444322 478999999999864
No 139
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.91 E-value=2.2e-09 Score=105.76 Aligned_cols=121 Identities=9% Similarity=0.098 Sum_probs=70.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCC------CceeE-EEEEE--E-EEC--CEEEEEEeCCCCCCCCcchh
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFE------PATSS-VKVIA--G-LVH--GVKIRIFDTPGLRSPAIGRT 536 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~------pgTTr-v~e~~--~-~i~--G~~VtLIDTPGL~ds~~~~~ 536 (1109)
..++|+|+|.+|||||||+|.|.+.......... ..+|. ..... . .++ ..++.||||||.....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 4589999999999999999999886543321100 01111 11111 1 222 3678999999975422
Q ss_pred hhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHH----HHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 537 VNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLP----LLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 537 ~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~----lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+ ...++. .+|++|+|++++.... ..+.. +.+++...-......|+++|.||+|+..
T Consensus 89 ---~~---~~~~~~--~~d~~i~v~D~~~~~~-~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~ 149 (198)
T 3t1o_A 89 ---AS---RKLILR--GVDGIVFVADSAPNRL-RANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPD 149 (198)
T ss_dssp ---HH---HHHHTT--TCCEEEEEEECCGGGH-HHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTT
T ss_pred ---HH---HHHHHh--cCCEEEEEEECCcchh-hHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhccc
Confidence 11 112333 4899999988763211 01222 2333333311223579999999999854
No 140
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.90 E-value=7.2e-10 Score=112.53 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=70.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|.|++... ...+.+.+.........+++. .+.||||||...... ...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~ 96 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR----------LRP 96 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTT----------TGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHH----------HHH
Confidence 468999999999999999999996543 222223332333444455654 455999999844221 011
Q ss_pred HHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|++++... +......++..+.... ...|+++|.||+|+..
T Consensus 97 ~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~ 148 (204)
T 4gzl_A 97 LSYP--QTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRD 148 (204)
T ss_dssp GGCT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHT
T ss_pred HHhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhcc
Confidence 1222 589999998876432 1100012344444433 2479999999999854
No 141
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.90 E-value=6.3e-09 Score=105.28 Aligned_cols=121 Identities=15% Similarity=0.089 Sum_probs=72.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
...++|+|+|.+|||||||+|.|++.... .... +.|+. .......+++. .+.+|||||..... ..+..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~------~~~~~- 91 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHE-PENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG------GWLRD- 91 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGT-TTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG------HHHHH-
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCC-ccCC-CCcccceEEEEEEECCEEEEEEEEecCCCccch------hhhHH-
Confidence 34589999999999999999999875321 1221 33322 33344556664 56788999985421 11111
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++. .+|++++|.+++....-..-..++..+..... ....|+|+|.||+|+..
T Consensus 92 --~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 92 --HCLQ--TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLAR 144 (195)
T ss_dssp --HHHH--HCSEEEEEEETTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTT
T ss_pred --Hhhc--cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccc
Confidence 2233 37999999887642211112233444443321 12478999999999854
No 142
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.90 E-value=9.9e-10 Score=108.93 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=69.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|.|++.... ..+.+.+.........+++ ..+.||||||...... + ..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~---~~ 73 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-------V---RP 73 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT-------T---GG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh-------h---HH
Confidence 4589999999999999999999976431 1221221111222334444 6789999999743211 0 01
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCc-HHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHND-LPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD-~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++ ..+|++++|++++....-..- ..++..+..... ..|+++|.||+|+..
T Consensus 74 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 74 LSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 125 (184)
T ss_dssp GGC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred hhc--CCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEEcchhhc
Confidence 122 258999999887642110000 123344444322 479999999999853
No 143
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.89 E-value=1.5e-08 Score=101.36 Aligned_cols=113 Identities=19% Similarity=0.098 Sum_probs=70.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...++|+|+|.+|||||||+|.|++..... .+.+ |.........+++ ..+.||||||.....
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------------- 81 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQ--EESP-EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ------------- 81 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCC--CCCT-TCEEEEEEEEETTEEEEEEEEECSSSCCHH-------------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCC--CcCC-CcceEEEEEEECCEEEEEEEEECCCChhhh-------------
Confidence 356899999999999999999998765321 1112 2222335556777 456779999974311
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
++. .+|++++|++++....-..-..++..+..... ....++++|.||+|+.
T Consensus 82 --~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 82 --FAA--WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS 132 (184)
T ss_dssp --HHH--HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred --eec--CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 222 27999999887652210001223333333211 1246899999999985
No 144
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.89 E-value=5.3e-09 Score=113.26 Aligned_cols=128 Identities=26% Similarity=0.401 Sum_probs=74.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCC------CCceeEEEEEEEEE--CC--EEEEEEeCCCCCCCCcchhhh
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAF------EPATSSVKVIAGLV--HG--VKIRIFDTPGLRSPAIGRTVN 538 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i------~pgTTrv~e~~~~i--~G--~~VtLIDTPGL~ds~~~~~~~ 538 (1109)
+.++|+|+|++|+|||||+|+|+|......+.+ .+.++......... .+ ..++++||||++.........
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 357999999999999999999998654333321 01222111111111 11 368999999998643221111
Q ss_pred HHHHHH----HHHHH----h--------cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 539 KKTLAS----IRKSI----K--------KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 539 eeIl~~----Ikk~L----k--------~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..+... ....+ + ...++++||+++......+..|..+++.+.+. .++|+|+||+|.+.
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCC
Confidence 112211 11111 1 11468899997766666776677777777653 78999999999875
No 145
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=1.8e-08 Score=115.92 Aligned_cols=129 Identities=22% Similarity=0.272 Sum_probs=68.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecC--C---CCceeEEEEEEE--EECC--EEEEEEeCCCCCCCCcchhhh
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINA--F---EPATSSVKVIAG--LVHG--VKIRIFDTPGLRSPAIGRTVN 538 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~--i---~pgTTrv~e~~~--~i~G--~~VtLIDTPGL~ds~~~~~~~ 538 (1109)
+..++|+|+|++|+|||||+|.|+|......+. . ...|+....... ...+ ..++|+||||+..........
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 345789999999999999999999976532221 0 022332211111 1223 478999999997642111111
Q ss_pred HHHHHHH----HHH-----------HhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 539 KKTLASI----RKS-----------IKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 539 eeIl~~I----kk~-----------Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..+...+ ..+ +..+.+|++||++..+...++..+..+++.+.. ..++|+|+||+|.+.
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~------~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLT 181 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT------TSEEEEEEESTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc------cCcEEEEEEcccCcc
Confidence 2222211 111 122456788888655434555545555555532 478999999999864
No 146
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.87 E-value=2.1e-09 Score=110.27 Aligned_cols=118 Identities=11% Similarity=0.061 Sum_probs=70.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEEC--CEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVH--GVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~--G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
...++|+|+|.+|||||||+|.|++.... ..+.+.+.........++ ...+.||||||...... ..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~ 92 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP--ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN----------VR 92 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT----------TG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC--CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH----------HH
Confidence 45689999999999999999999976532 222122222222233333 36789999999743211 01
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCC-cHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHN-DLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~e-D~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++|+|++++....-.. ...++..+.... ...|+++|.||+|+..
T Consensus 93 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 93 PLCYS--DSDAVLLCFDISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRT 145 (214)
T ss_dssp GGGCT--TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGG
T ss_pred HHHcC--CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcc
Confidence 11222 4899999988775321100 123444455443 2479999999999853
No 147
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.85 E-value=3.3e-09 Score=105.59 Aligned_cols=116 Identities=19% Similarity=0.239 Sum_probs=62.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEE-----CCEEEEEEeCCCCCCCCcchhhhHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLV-----HGVKIRIFDTPGLRSPAIGRTVNKKTLA 543 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i-----~G~~VtLIDTPGL~ds~~~~~~~eeIl~ 543 (1109)
.++|+|+|++|||||||+|.|++......+.+.+.+.. .......+ ....+.+|||||..... .+
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~-- 72 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFY-------ST-- 72 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHH-------TT--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHH-------Hh--
Confidence 47999999999999999999998632222222121111 22222111 35688999999963211 00
Q ss_pred HHHHHHhcCCCcEEEEEecCCCC--CCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 544 SIRKSIKKFPPDVVLYVDRLDTH--TRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 544 ~Ikk~Lk~~gpDVVLLVvrlds~--t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
...++. +.+++++|.+++.. .+. .-..++..+.... ...|+++|.||+|+.
T Consensus 73 -~~~~~~--~~~~~i~v~d~~~~~~s~~-~~~~~~~~~~~~~---~~~piilv~nK~Dl~ 125 (184)
T 2zej_A 73 -HPHFMT--QRALYLAVYDLSKGQAEVD-AMKPWLFNIKARA---SSSPVILVGTHLDVS 125 (184)
T ss_dssp -SHHHHH--HSEEEEEEEEGGGCHHHHH-THHHHHHHHHHHC---TTCEEEEEEECGGGC
T ss_pred -hHHHcc--CCcEEEEEEeCCcchhHHH-HHHHHHHHHHhhC---CCCcEEEEEECCCcc
Confidence 111222 26888889777642 111 1122333333322 247899999999974
No 148
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.85 E-value=1.7e-09 Score=110.64 Aligned_cols=117 Identities=13% Similarity=0.081 Sum_probs=70.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|.+|||||||+|.|++.... ..+.+.+.........+++ ..+.||||||...... + ..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~---~~ 94 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-------V---RP 94 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT-------T---GG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH-------H---HH
Confidence 4589999999999999999999986532 1221222112222334444 6789999999743211 0 01
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCc-HHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHND-LPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD-~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.++ ..+|++|+|++++....-..- ..++..+..... ..|+++|.||+|+..
T Consensus 95 ~~~--~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 95 LSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP---NTKMLLVGCKSDLRT 146 (205)
T ss_dssp GGC--TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCEEEEEEECGGGGG
T ss_pred hhc--cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC---CCCEEEEEechhhcc
Confidence 122 258999999887642110000 123344444322 479999999999853
No 149
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.84 E-value=3.3e-09 Score=107.22 Aligned_cols=116 Identities=15% Similarity=0.084 Sum_probs=71.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..++|+|+|.+|||||||+|.|++... ...+ ..|+. .......+++ ..+.||||||...... + .
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~-~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~---~ 74 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDY-IPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR-------L---R 74 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSC-CCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccC-CCccceeEEEEEEECCEEEEEEEEECCCcHHHHH-------H---H
Confidence 458999999999999999999997542 1222 22222 2223344555 5889999999854321 0 1
Q ss_pred HHHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++++|++++... +......++..+..... ..|+++|.||+|+..
T Consensus 75 ~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 75 PLSYR--GADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRD 127 (212)
T ss_dssp CGGGT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred Hhhcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhh
Confidence 11222 489999998876422 11000123444444322 478999999999753
No 150
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.84 E-value=8.2e-10 Score=107.86 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=64.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..++|+|+|.+|||||||+|+|++... . ..+ ..|+. .......+++ ..+.||||||...... ..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~-~-~~~-~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~----------~~ 73 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF-P-TDY-VPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNR----------LR 73 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC-C------------CBCCCC-------CEEECCCC-CTTTT----------TG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC-C-CCC-CCeeeeeEEEEEEECCEEEEEEEEECCCChhhhh----------hH
Confidence 458999999999999999999997642 1 222 22322 1111122333 4566999999754221 01
Q ss_pred HHHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++. .+|++++|++++... +......++..+..... ..|+++|.||+|+..
T Consensus 74 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 74 PLSYR--GADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRD 126 (182)
T ss_dssp GGGGT--TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHT
T ss_pred Hhhcc--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhc
Confidence 11222 489999998876422 11000124444544432 479999999999753
No 151
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=98.32 E-value=4e-10 Score=113.56 Aligned_cols=117 Identities=18% Similarity=0.133 Sum_probs=69.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
...++|+|+|.+|||||||+|+|++... ...+ ..|+. .......+++ ..+.||||||..... .+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~-~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~--- 94 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEY-IPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RL--- 94 (204)
Confidence 3468999999999999999999996543 1222 22322 2222233444 456699999974421 11
Q ss_pred HHHHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++. .+|++++|++++... +......++..+..... ..|+++|+||+|+..
T Consensus 95 ~~~~~~--~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~ 148 (204)
T 3th5_A 95 RPLSYP--QTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 148 (204)
Confidence 111222 379999997776432 22111133444443322 478999999999864
No 152
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.82 E-value=2.7e-09 Score=123.19 Aligned_cols=116 Identities=15% Similarity=0.148 Sum_probs=75.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
...++|+|+|.+|||||||+|.|++.... ..+ + |.........+.+.++.||||||...... . ...
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~~-~-T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~-------~~~ 385 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV--TTI-P-TVGFNVETVTYKNVKFNVWDVGGQDKIRP---L-------WRH 385 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC--CCC-C-CSSEEEEEEESSSCEEEEEEECCCGGGSG---G-------GGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC--CcC-C-ccceeEEEEEeCCEEEEEEECCCcHHHHH---H-------HHH
Confidence 35689999999999999999999987632 222 2 33344555667899999999999644221 0 112
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCC--CCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGS--SVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~--~v~k~vIVVLTKaD~l~ 602 (1109)
++. .+|++|+|++++.... ...+..++...... ....|+|||+||+|+..
T Consensus 386 ~~~--~ad~~i~V~D~~~~~s---~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 386 YYT--GTQGLIFVVDCADRDR---IDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp GGT--TCCEEEEEEETTCGGG---HHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred Hhc--cCCEEEEEEECcchhH---HHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 333 4899999988765321 11222233333221 12479999999999853
No 153
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.81 E-value=7.7e-10 Score=124.67 Aligned_cols=120 Identities=19% Similarity=0.204 Sum_probs=70.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCC------cceecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCc-chhhhHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEE------KSTINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAI-GRTVNKKT 541 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~------va~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~-~~~~~eeI 541 (1109)
+.+|+++|.||||||||+|+|++.. ...++.. |+||+ .... .+. ..+.|+||||+.+... ......
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~-~gtT~~~~~~--~~~-~~~~liDtPG~~~~~~~~~~l~~-- 233 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHF-PGTTLDLIDI--PLD-EESSLYDTPGIINHHQMAHYVGK-- 233 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECC-C----CEEEE--ESS-SSCEEEECCCBCCTTSGGGGSCH--
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCC-CCeecceEEE--Eec-CCeEEEeCCCcCcHHHHHHHhhH--
Confidence 4689999999999999999999863 3446665 78887 3332 222 2389999999987642 111222
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..++.++....++.++|+++....-.. .....+..+. ....++++|+||.|.+.
T Consensus 234 -~~l~~~~~~~~i~~~~~~l~~~~~~~~-g~l~~~d~l~-----~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 234 -QSLKLITPTKEIKPMVFQLNEEQTLFF-SGLARFDYVS-----GGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp -HHHHHHSCSSCCCCEEEEECTTEEEEE-TTTEEEEEEE-----SSSEEEEEEECTTSCEE
T ss_pred -HHHHHhccccccCceEEEEcCCCEEEE-cceEEEEEec-----CCCceEEEEecCccccc
Confidence 234444444468888888665321100 0111111111 12468999999999875
No 154
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.81 E-value=7.1e-09 Score=111.42 Aligned_cols=117 Identities=18% Similarity=0.110 Sum_probs=74.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEEEE--EEeCCCCCCCCcchhhhHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVKIR--IFDTPGLRSPAIGRTVNKKTLA 543 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~Vt--LIDTPGL~ds~~~~~~~eeIl~ 543 (1109)
....++|+++|.+|||||||+|.+++... ...+ ..|+. .......+++..+. ||||||......
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~-~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---------- 218 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAF--PGEY-IPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDR---------- 218 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSC-CCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTT----------
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCC--Cccc-CCcccceeEEEEEECCEEEEEEEEeCCCchhhhH----------
Confidence 45678999999999999999999996542 2233 33443 33445566776555 999999754221
Q ss_pred HHHHHHhcCCCcEEEEEecCCCCCCCCCcH--HHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 544 SIRKSIKKFPPDVVLYVDRLDTHTRDHNDL--PLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 544 ~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~--~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
....++. .+|++++|++++....- .+. .++..+..... ..|+++|.||+|+..
T Consensus 219 ~~~~~~~--~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 219 LRPLSYP--QTDVFLICFSLVSPASF-HHVRAKWYPEVRHHCP---NTPIILVGTKLDLRD 273 (332)
T ss_dssp TGGGGCT--TCSEEEEEEETTCHHHH-HHHHHTHHHHHHHHCT---TSCEEEEEECHHHHT
T ss_pred HHHHhcc--CCCEEEEEEeCCCHHHH-HHHHHHHHHHHHhhCC---CCcEEEEEEchhccc
Confidence 0111222 48999999887642210 011 23344444332 579999999999753
No 155
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.79 E-value=1.4e-08 Score=117.83 Aligned_cols=118 Identities=20% Similarity=0.220 Sum_probs=72.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcce------------------------------ecCCCCceeE-EEEEEEEEC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKST------------------------------INAFEPATSS-VKVIAGLVH 516 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~------------------------------Vs~i~pgTTr-v~e~~~~i~ 516 (1109)
...++|+++|.+|+|||||+|.|++..... ... ..++|. +........
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~-~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEER-ERGVTVSICTSHFSTH 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC-------------------------CCSSCCCCEEEEECS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHh-hcCcceEeeeEEEecC
Confidence 346899999999999999999998652110 001 123332 444556677
Q ss_pred CEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCC------CCCCcHHHHHHHHhhhCCCCCCe
Q 036930 517 GVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHT------RDHNDLPLLKSLTSSLGSSVWQN 590 (1109)
Q Consensus 517 G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t------~d~eD~~lLk~I~e~FG~~v~k~ 590 (1109)
+.++.||||||..+. ... ....+. .+|++|+|++++... ........+..+ ..++ .++
T Consensus 110 ~~~~~iiDTPG~~~f------~~~----~~~~~~--~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~-~~~~---~~~ 173 (483)
T 3p26_A 110 RANFTIVDAPGHRDF------VPN----AIMGIS--QADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SSLG---IHN 173 (483)
T ss_dssp SCEEEEECCCCCGGG------HHH----HHHHHT--TCSEEEEEEECCC------CCCCHHHHHHHHHH-HHTT---CCC
T ss_pred CceEEEEECCCcHHH------HHH----HHHhhh--hCCEEEEEEECCCCccccccchhhhHHHHHHHH-HHcC---CCc
Confidence 899999999999441 112 222333 489999998876531 111122222222 2223 357
Q ss_pred EEEEEeccCCCC
Q 036930 591 AILCLTHAASEP 602 (1109)
Q Consensus 591 vIVVLTKaD~l~ 602 (1109)
+|+|+||+|+..
T Consensus 174 iIvviNK~Dl~~ 185 (483)
T 3p26_A 174 LIIAMNKMDNVD 185 (483)
T ss_dssp EEEEEECGGGGT
T ss_pred EEEEEECcCccc
Confidence 999999999753
No 156
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.79 E-value=8e-10 Score=124.50 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=75.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC-----CcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCc-chhhhHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE-----EKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAI-GRTVNKKTLA 543 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~-----~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~-~~~~~eeIl~ 543 (1109)
+.+|+++|.||||||||+|+|++. ....++.+ |+||+-.. ...+ +..+.|+||||+.+... ......+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~-~gtT~~~~-~~~~-~~~~~liDtPG~~~~~~~~~~l~~~--- 235 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYF-PGTTLDMI-EIPL-ESGATLYDTPGIINHHQMAHFVDAR--- 235 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEEC-TTSSCEEE-EEEC-STTCEEEECCSCCCCSSGGGGSCTT---
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCC-CCeEEeeE-EEEe-CCCeEEEeCCCcCcHHHHHHHHhHH---
Confidence 358999999999999999999987 55677775 77776222 1222 23479999999987542 1111222
Q ss_pred HHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCCC
Q 036930 544 SIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEPP 603 (1109)
Q Consensus 544 ~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~p 603 (1109)
.++.++....+|.++|+++....-.-. ....+..+. + ...++++++||.|.+..
T Consensus 236 ~l~~~~~~~~i~~~~~~l~~~~~~~~g-~l~~l~~l~---~--~~~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 236 DLKIITPKREIHPRVYQLNEGQTLFFG-GLARLDYIK---G--GRRSFVCYMANELTVHR 289 (369)
T ss_dssp THHHHSCSSCCCCEEEEECTTEEEEET-TTEEEEEEE---S--SSEEEEEEECTTSCEEE
T ss_pred HHHHHhcccccCceEEEEcCCceEEEC-CEEEEEEcc---C--CCceEEEEecCCccccc
Confidence 233334334689999997664221000 110111111 1 23689999999998753
No 157
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.78 E-value=1.7e-08 Score=105.12 Aligned_cols=121 Identities=17% Similarity=0.100 Sum_probs=70.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCEE--EEEEeCCCCCCCCcchhhhHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGVK--IRIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~~--VtLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
...++|+|+|.+|||||||+|.+++.....+..+ +.|+. .......++|.. +.++||+|... . . +.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~------~-~---~~ 103 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKG------E-N---EW 103 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTH------H-H---HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcc------h-h---hh
Confidence 3458999999999999999999998654333332 22221 333445667754 67899998532 0 1 11
Q ss_pred HHHHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+... .....|++++|.+++... +.. -..++..+..... ....|+|+|.||+|+..
T Consensus 104 l~~~-~~~~a~~~ilVydvt~~~sf~~-~~~~~~~l~~~~~-~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 104 LHDH-CMQVGDAYLIVYSITDRASFEK-ASELRIQLRRARQ-TEDIPIILVGNKSDLVR 159 (211)
T ss_dssp HHHC-CCCCCSEEEEEEETTCHHHHHH-HHHHHHHHHTSGG-GTTSCEEEEEECTTCGG
T ss_pred HHHH-HHhhCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhC-CCCCcEEEEEEChHHhc
Confidence 2221 112478999998776421 110 1122233332211 12478999999999853
No 158
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.75 E-value=2.1e-08 Score=113.70 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=69.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEE--------------------EEEEEECCEEEEEEeCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVK--------------------VIAGLVHGVKIRIFDTPG 527 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~--------------------e~~~~i~G~~VtLIDTPG 527 (1109)
...++|+++|.+|+|||||+|+|++........+ +.++... ........+++.||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGY-AETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEE-EEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCc-cccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 4578999999999999999999998543221111 1111000 000011127899999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 528 LRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 528 L~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..+ ....+ ...+. .+|++|+|++++...........+..+.. ++ .+++|+|+||+|+..
T Consensus 85 h~~------~~~~~----~~~~~--~~D~~ilVvda~~~~~~~qt~~~~~~~~~-~~---~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 85 HEV------LMATM----LSGAA--LMDGAILVVAANEPFPQPQTREHFVALGI-IG---VKNLIIVQNKVDVVS 143 (403)
T ss_dssp CGG------GHHHH----HHHHT--TCSEEEEEEETTSCSSCHHHHHHHHHHHH-HT---CCCEEEEEECGGGSC
T ss_pred cHH------HHHHH----HHHHh--hCCEEEEEEECCCCCCcHHHHHHHHHHHH-cC---CCCEEEEEECccccc
Confidence 632 11122 22232 48999999877653212223334443332 33 268999999999854
No 159
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.74 E-value=2.9e-08 Score=118.93 Aligned_cols=119 Identities=19% Similarity=0.212 Sum_probs=75.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecC-----------------------------CCCceeE-EEEEEEEECC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINA-----------------------------FEPATSS-VKVIAGLVHG 517 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~-----------------------------i~pgTTr-v~e~~~~i~G 517 (1109)
...++|+++|.+|+|||||+|.|++........ ..+++|. +........+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 567899999999999999999999764322210 0123343 4445566788
Q ss_pred EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCC----C--CCCCcHHHHHHHHhhhCCCCCCeE
Q 036930 518 VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTH----T--RDHNDLPLLKSLTSSLGSSVWQNA 591 (1109)
Q Consensus 518 ~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~----t--~d~eD~~lLk~I~e~FG~~v~k~v 591 (1109)
++++||||||..+. .......+ ..+|++|+|++++.. . ........+..+. .++ .+++
T Consensus 245 ~~~~iiDTPG~e~f----------~~~~~~~~--~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-~lg---i~~i 308 (611)
T 3izq_1 245 ANFTIVDAPGHRDF----------VPNAIMGI--SQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SLG---IHNL 308 (611)
T ss_dssp CEEEEEECCSSSCH----------HHHHTTTS--SCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-TTT---CCEE
T ss_pred ceEEEEECCCCccc----------HHHHHHHH--hhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-HcC---CCeE
Confidence 99999999998441 11111222 258999999877631 0 1111223333222 223 3579
Q ss_pred EEEEeccCCCC
Q 036930 592 ILCLTHAASEP 602 (1109)
Q Consensus 592 IVVLTKaD~l~ 602 (1109)
|||+||+|+..
T Consensus 309 IVVvNKiDl~~ 319 (611)
T 3izq_1 309 IIAMNKMDNVD 319 (611)
T ss_dssp EEEEECTTTTT
T ss_pred EEEEecccccc
Confidence 99999999854
No 160
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.73 E-value=2.6e-08 Score=100.57 Aligned_cols=119 Identities=17% Similarity=0.135 Sum_probs=66.7
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
.++|+|+|.+|||||||+|.+++.....+..+ +.|+. .......++|. .+.++||+|..... .... .
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~--~~~~----~--- 75 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGEN--EWLH----D--- 75 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC------CTTG----G---
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchh--hhHH----H---
Confidence 47999999999999999999997543223332 22221 23334566775 45789999864311 0000 0
Q ss_pred HHHhcCCCcEEEEEecCCCCC-CCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHT-RDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t-~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+.. .+|++++|.+++... +.. -..++..+..... ....++|+|.||+|+..
T Consensus 76 ~~~~--~~~~~i~v~dv~~~~s~~~-~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 76 HCMQ--VGDAYLIVYSITDRASFEK-ASELRIQLRRARQ-TEDIPIILVGNKSDLVR 128 (192)
T ss_dssp GHHH--HCSEEEEEEETTCHHHHHH-HHHHHHHHHHHTT-TSCCCEEEEEECTTCGG
T ss_pred hhcc--cCCEEEEEEECCCHHHHHH-HHHHHHHHHHhhC-CCCCeEEEEEechhhhc
Confidence 1111 268888887776422 110 1123333433221 12468999999999753
No 161
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.73 E-value=5.2e-08 Score=113.46 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=70.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcc------eecCCCCceeE-EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKS------TINAFEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKT 541 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va------~Vs~i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeI 541 (1109)
..++|+++|.+|+|||||+|+|++.... .... .+++|. +......++++++.||||||..+ .
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~-~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~----------~ 86 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQ-KRGITIDIGFSAFKLENYRITLVDAPGHAD----------L 86 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC---------------------CCCEEEETTEEEEECCCSSHHH----------H
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccc-cCccEEecceEEEEECCEEEEEEECCChHH----------H
Confidence 3689999999999999999999987621 1111 233333 33345566899999999999622 1
Q ss_pred HHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 542 LASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 542 l~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.......+. .+|++|+|++++.. ........+..+.. ++ .+.|+|+||+|+..
T Consensus 87 ~~~~~~~~~--~aD~~ilVvda~~g-~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 87 IRAVVSAAD--IIDLALIVVDAKEG-PKTQTGEHMLILDH-FN----IPIIVVITKSDNAG 139 (482)
T ss_dssp HHHHHHHTT--SCCEEEEEEETTTC-SCHHHHHHHHHHHH-TT----CCBCEEEECTTSSC
T ss_pred HHHHHHHHh--hCCEEEEEEecCCC-ccHHHHHHHHHHHH-cC----CCEEEEEECCCccc
Confidence 222223333 48999999877642 22223344443332 23 56699999999853
No 162
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.73 E-value=4.1e-08 Score=113.23 Aligned_cols=130 Identities=21% Similarity=0.233 Sum_probs=68.9
Q ss_pred cCCCcE--EEEEecCCCChhHHHHHHhCCCcce--ecCCCCceeEE-EEEEEEECC--EEEEEEeCCCCCCCCcchhhhH
Q 036930 467 MDFSLN--ILVLGKTGVGKSATINSIFGEEKST--INAFEPATSSV-KVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNK 539 (1109)
Q Consensus 467 L~~gLr--IaLVGkTGVGKSSLINaLLG~~va~--Vs~i~pgTTrv-~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~e 539 (1109)
+..+.. |+|+|++|+|||||+|.|+|..... +....+++++. ..+.....+ ..++++||||++..........
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~ 116 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYK 116 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSH
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhh
Confidence 344444 9999999999999999999985321 11122343332 111112222 3789999999986422111112
Q ss_pred H----HHHHHHHHHhc-------------CCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 540 K----TLASIRKSIKK-------------FPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 540 e----Il~~Ikk~Lk~-------------~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
. +...+..++.. ..+|+++|++.-....+...|..+++.|. ...++|+|+||+|.+.
T Consensus 117 ~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~------~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 117 PIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD------SKVNIIPIIAKADAIS 190 (427)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC------SCSEEEEEESCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh------hCCCEEEEEcchhccc
Confidence 2 22222222221 12455555433333445445666666553 2479999999999875
No 163
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.73 E-value=4.5e-08 Score=98.61 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=70.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCE--EEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGV--KIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~--~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
..++|+|+|++|||||||+|.|+|......... ..+.........++|. .+.+|||||...... . ..
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~-t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~---~-------~~ 72 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKS-TIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR---I-------TS 72 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---C-CCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC---C-------CH
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCC-ccceeEEEEEEEECCEEEEEEEEECCCchhhhh---h-------hH
Confidence 357999999999999999999998754322211 1222344455667775 567899999643211 0 01
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+.. .++++++|.++.....-..-..++..+.... ....++++|+||+|+..
T Consensus 73 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 73 AYYR--GAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp HHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG
T ss_pred HHHh--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccc
Confidence 1122 4789999977654211111122333333321 12468999999999853
No 164
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.69 E-value=1.2e-07 Score=107.52 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=69.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecC-CCCceeE-EEEEEEEE---------------C--------CEEEEEE
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINA-FEPATSS-VKVIAGLV---------------H--------GVKIRIF 523 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~-i~pgTTr-v~e~~~~i---------------~--------G~~VtLI 523 (1109)
..++|+++|.+|+|||||+|+|+|........ ..++.|. +......+ . ...+.||
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 45799999999999999999999864322111 1233222 11111111 1 2789999
Q ss_pred eCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 524 DTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 524 DTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
||||..+ ....+...+. .+|++|+|++++...........+..+. .++ .+++|+|+||+|+..
T Consensus 89 DtPGh~~----------f~~~~~~~~~--~~D~~ilVvda~~g~~~~qt~e~l~~~~-~~~---~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 89 DAPGHEA----------LMTTMLAGAS--LMDGAILVIAANEPCPRPQTREHLMALQ-IIG---QKNIIIAQNKIELVD 151 (410)
T ss_dssp ECSSHHH----------HHHHHHHCGG--GCSEEEEEEETTSCSSCHHHHHHHHHHH-HHT---CCCEEEEEECGGGSC
T ss_pred ECCChHH----------HHHHHHhhhh--hCCEEEEEEECCCCCCChhHHHHHHHHH-HcC---CCcEEEEEECccCCC
Confidence 9999522 1222222232 3799999988764221222333344333 233 268999999999853
No 165
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.68 E-value=1.3e-08 Score=110.81 Aligned_cols=64 Identities=25% Similarity=0.403 Sum_probs=42.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
...+++|+++|.||||||||||+|+|...+.++.. |+||+... ...+ +..+.|+||||+.....
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~-~~~~-~~~~~l~DtpG~~~~~~ 180 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQ-WVKV-GKELELLDTPGILWPKF 180 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------C-CEEE-TTTEEEEECCCCCCSCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeE-EEEe-CCCEEEEECcCcCCCCC
Confidence 45678999999999999999999999998888886 88887322 2222 55789999999988654
No 166
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.67 E-value=5e-08 Score=111.67 Aligned_cols=118 Identities=16% Similarity=0.134 Sum_probs=70.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecC---------CCCcee-----------------------EEEEEEEEE
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINA---------FEPATS-----------------------SVKVIAGLV 515 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~---------i~pgTT-----------------------rv~e~~~~i 515 (1109)
+..++|+++|.+|+|||||+|+|++........ ..++|+ .+...+...
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 345899999999999999999998654221110 012222 122334556
Q ss_pred CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEE
Q 036930 516 HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCL 595 (1109)
Q Consensus 516 ~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVL 595 (1109)
.++++.||||||..+. ...+. ..+. .+|++|+|++++... .......+..+. .++ .+++|+|+
T Consensus 102 ~~~~~~iiDtpGh~~f------~~~~~----~~~~--~aD~~ilVvDa~~g~-~~qt~~~l~~~~-~~~---~~~iIvvi 164 (434)
T 1zun_B 102 AKRKFIIADTPGHEQY------TRNMA----TGAS--TCDLAIILVDARYGV-QTQTRRHSYIAS-LLG---IKHIVVAI 164 (434)
T ss_dssp SSEEEEEEECCCSGGG------HHHHH----HHHT--TCSEEEEEEETTTCS-CHHHHHHHHHHH-HTT---CCEEEEEE
T ss_pred CCceEEEEECCChHHH------HHHHH----HHHh--hCCEEEEEEECCCCC-cHHHHHHHHHHH-HcC---CCeEEEEE
Confidence 7899999999996431 11221 2232 589999998876432 112233333332 223 35799999
Q ss_pred eccCCCC
Q 036930 596 THAASEP 602 (1109)
Q Consensus 596 TKaD~l~ 602 (1109)
||+|+..
T Consensus 165 NK~Dl~~ 171 (434)
T 1zun_B 165 NKMDLNG 171 (434)
T ss_dssp ECTTTTT
T ss_pred EcCcCCc
Confidence 9999853
No 167
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.67 E-value=9.1e-08 Score=96.29 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=71.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEE--EEEeCCCCCCCCcchhhhHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKI--RIFDTPGLRSPAIGRTVNKKTLAS 544 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~V--tLIDTPGL~ds~~~~~~~eeIl~~ 544 (1109)
....++|+|+|++|||||||+|.|++........ ...++........++|..+ .++||||...... .
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~-~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~---~------- 94 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK-STIGVEFATRSIQVDGKTIKAQIWDTAGLERYRA---I------- 94 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCC-CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSC---C-------
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC-CccceEEEEEEEEECCEEEEEEEEECCCCcchhh---h-------
Confidence 3446899999999999999999999875432222 1222334445566788654 5699999865321 0
Q ss_pred HHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 545 IRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 545 Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+..+.. .++++++|.++.....-..-..++..+.... ....++++|+||+|+.
T Consensus 95 ~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~ 147 (191)
T 1oix_A 95 TSAYYR--GAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLR 147 (191)
T ss_dssp CHHHHT--TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGG
T ss_pred hHHHhh--cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECcccc
Confidence 011222 3688888876653211001112333333321 2246899999999974
No 168
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.67 E-value=4.1e-08 Score=119.19 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=73.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcc-----------eecCC-----CCceeE-EEEEEEEECCEEEEEEeCCCCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKS-----------TINAF-----EPATSS-VKVIAGLVHGVKIRIFDTPGLRS 530 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va-----------~Vs~i-----~pgTTr-v~e~~~~i~G~~VtLIDTPGL~d 530 (1109)
....+|+|+|.+|+|||||+|+|++.... .+.++ ..++|. .......+++..+.||||||..+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 34578999999999999999999942111 01111 123332 33445677899999999999976
Q ss_pred CCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 531 s~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.. ..+.+.+ .. +|++|+|++.... ....+..+++.+... ..|+|+|+||+|...
T Consensus 88 f~------~~~~~~l----~~--aD~~llVvDa~~g-~~~~~~~~~~~~~~~-----~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 88 FT------VEVERSL----RV--LDGAVTVLDAQSG-VEPQTETVWRQATTY-----GVPRIVFVNKMDKLG 141 (693)
T ss_dssp CC------HHHHHHH----HH--CSEEEEEEETTTB-SCHHHHHHHHHHHHT-----TCCEEEEEECTTSTT
T ss_pred hH------HHHHHHH----HH--CCEEEEEECCCCC-CcHHHHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 32 1233333 32 7999999877642 222344555555432 478999999999854
No 169
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.67 E-value=5.5e-08 Score=101.78 Aligned_cols=117 Identities=14% Similarity=0.212 Sum_probs=70.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECC--EEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHG--VKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G--~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
.+||+|||.+|||||||++.++... +.. .+.|... ........+++ ..+.||||+|...... + ..
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~-f~~-~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~-------l---~~ 80 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDS-FDN-TYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRS-------L---IP 80 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC-CC-----------CEEEEEECSSCEEEEEEECCSCTTTCGG-------G---HH
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCC-CCC-CcCCccceEEEEEEEEecceEEEEEEEECCCchhhhh-------H---HH
Confidence 4799999999999999999998543 221 1112111 12223334454 5678999999754221 1 11
Q ss_pred HHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+++ .++++++|.+++....-..-..++..+....+. ..|+|||.||+|+..
T Consensus 81 ~~~~--~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~--~~piilVgNK~Dl~~ 132 (216)
T 4dkx_A 81 SYIR--DSAAAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLAD 132 (216)
T ss_dssp HHHT--TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT--SSEEEEEEECTTCGG
T ss_pred HHhc--cccEEEEEeecchhHHHHHHHHHHHHHHHhcCC--CCeEEEEeeccchHh
Confidence 2232 489999998887532212233455556555554 368999999999753
No 170
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.66 E-value=2.2e-08 Score=118.03 Aligned_cols=114 Identities=11% Similarity=0.156 Sum_probs=73.0
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcce---------------ecCC-----CCcee-EEEEEEEEECCEEEEEEeCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKST---------------INAF-----EPATS-SVKVIAGLVHGVKIRIFDTPGL 528 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~---------------Vs~i-----~pgTT-rv~e~~~~i~G~~VtLIDTPGL 528 (1109)
..+|+|+|.+|+|||||+|+|++..... +.++ ..++| ........+.+..+.||||||.
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 4689999999999999999997322111 1110 01222 1234556678999999999998
Q ss_pred CCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 529 RSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 529 ~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+... . ..+++. .+|++|+|++.... .......+++.+... ..|+|+|+||+|..
T Consensus 93 ~df~~------~----~~~~l~--~aD~allVvDa~~g-~~~~t~~~~~~~~~~-----~iPiivviNK~Dl~ 147 (528)
T 3tr5_A 93 ADFTE------D----TYRTLT--AVDSALMVIDAAKG-VEPRTIKLMEVCRLR-----HTPIMTFINKMDRD 147 (528)
T ss_dssp TTCCH------H----HHHGGG--GCSEEEEEEETTTC-SCHHHHHHHHHHHTT-----TCCEEEEEECTTSC
T ss_pred hhHHH------H----HHHHHH--hCCEEEEEEeCCCC-CCHHHHHHHHHHHHc-----CCCEEEEEeCCCCc
Confidence 66331 1 223343 38999999877642 222244455544432 47999999999984
No 171
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.63 E-value=1.7e-07 Score=102.73 Aligned_cols=128 Identities=18% Similarity=0.271 Sum_probs=60.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCC------CceeEEEEEEE--EEC--CEEEEEEeCCCCCCCCcc----
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFE------PATSSVKVIAG--LVH--GVKIRIFDTPGLRSPAIG---- 534 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~------pgTTrv~e~~~--~i~--G~~VtLIDTPGL~ds~~~---- 534 (1109)
..++|+|+|++|||||||+|.|+|...+..+.+. ..|........ ... ...++++||||+......
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4589999999999999999999987443322110 11221111111 112 357899999999543110
Q ss_pred hhhhHHHHHHHHHHHh-----------cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 535 RTVNKKTLASIRKSIK-----------KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 535 ~~~~eeIl~~Ikk~Lk-----------~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
......+......++. ...++++||++..+..+++..+..+++.+. . ..++++|+||+|+..
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~----~--~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----N--KVNIVPVIAKADTLT 169 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT----T--TSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH----h--cCCEEEEEEeCCCCC
Confidence 0111111111111111 113567788865544445443433333332 1 358999999999853
No 172
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.63 E-value=1.5e-07 Score=110.71 Aligned_cols=138 Identities=18% Similarity=0.170 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhhhccccc----CCCcEEEEEecCCCChhHHHHHHh------CCCcceecC--CCCce--------eE--
Q 036930 450 EAAKRVAEQHEIEDKDDM----DFSLNILVLGKTGVGKSATINSIF------GEEKSTINA--FEPAT--------SS-- 507 (1109)
Q Consensus 450 e~a~~~a~qlla~~~e~L----~~gLrIaLVGkTGVGKSSLINaLL------G~~va~Vs~--i~pgT--------Tr-- 507 (1109)
..+..++.+++......+ ..+..|+|+|++|||||||+|.|+ |.++..++. +.+++ ++
T Consensus 77 ~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~ 156 (504)
T 2j37_W 77 HAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKAR 156 (504)
T ss_dssp HHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccC
Confidence 345555566665322222 345679999999999999999999 887766544 12221 11
Q ss_pred --EEEEE---------------EEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCC
Q 036930 508 --VKVIA---------------GLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDH 570 (1109)
Q Consensus 508 --v~e~~---------------~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~ 570 (1109)
+.... ..+.+..++||||||...... ....++. .+.+++ .+|.+++|++.... .
T Consensus 157 i~v~~~~~~~dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~--~l~~el~-~~~~~i---~pd~vllVvDa~~g-~-- 227 (504)
T 2j37_W 157 IPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQED--SLFEEML-QVANAI---QPDNIVYVMDASIG-Q-- 227 (504)
T ss_dssp CCEEECCCCSCHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCH--HHHHHHH-HHHHHH---CCSEEEEEEETTCC-T--
T ss_pred ceEEccCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCcccch--hHHHHHH-HHHhhh---cCceEEEEEecccc-c--
Confidence 11100 011678899999999976321 1112222 222222 48999999776542 2
Q ss_pred CcHHHHHHHHhhhCCCCCCe-EEEEEeccCCCC
Q 036930 571 NDLPLLKSLTSSLGSSVWQN-AILCLTHAASEP 602 (1109)
Q Consensus 571 eD~~lLk~I~e~FG~~v~k~-vIVVLTKaD~l~ 602 (1109)
.....++.+.+. .+ .++|+||+|...
T Consensus 228 ~~~~~a~~~~~~------~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 228 ACEAQAKAFKDK------VDVASVIVTKLDGHA 254 (504)
T ss_dssp THHHHHHHHHHH------HCCCCEEEECTTSCC
T ss_pred cHHHHHHHHHhh------cCceEEEEeCCcccc
Confidence 234444444332 34 478999999753
No 173
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.61 E-value=1.5e-07 Score=106.72 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecC-CCCceeE-EEEEEEEE---------------C--------CEEEEEE
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINA-FEPATSS-VKVIAGLV---------------H--------GVKIRIF 523 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~-i~pgTTr-v~e~~~~i---------------~--------G~~VtLI 523 (1109)
..++|+++|.+++|||||+|+|+|........ ..++.|. +......+ . .+.+.||
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 45899999999999999999999864322211 1233222 11111111 1 1789999
Q ss_pred eCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 524 DTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 524 DTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
||||..+ ........+ ..+|++|+|++++...........+..+. .++ .+++|+|+||+|+..
T Consensus 87 DtPGh~~----------f~~~~~~~~--~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~---~~~iivv~NK~Dl~~ 149 (408)
T 1s0u_A 87 DSPGHET----------LMATMLSGA--SLMDGAILVIAANEPCPQPQTKEHLMALE-ILG---IDKIIIVQNKIDLVD 149 (408)
T ss_dssp ECSSHHH----------HHHHHHTTC--SCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTT---CCCEEEEEECTTSSC
T ss_pred ECCCHHH----------HHHHHHHhH--hhCCEEEEEEECCCCCCCchhHHHHHHHH-HcC---CCeEEEEEEccCCCC
Confidence 9999521 111221212 24799999988764221112233333332 233 258999999999865
No 174
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.61 E-value=3.6e-08 Score=111.72 Aligned_cols=115 Identities=10% Similarity=0.020 Sum_probs=71.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC---C----cce---ecCC-----CCcee-EEEEEEEEECCEEEEEEeCCCCCCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE---E----KST---INAF-----EPATS-SVKVIAGLVHGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~---~----va~---Vs~i-----~pgTT-rv~e~~~~i~G~~VtLIDTPGL~ds~ 532 (1109)
..++|+++|.+|+|||||+|+|++. . .+. +.+. ..+.| ..........+.++.||||||..+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f- 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY- 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH-
Confidence 4589999999999999999999873 1 110 0000 12222 2334455567899999999998541
Q ss_pred cchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCe-EEEEEeccCCC
Q 036930 533 IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQN-AILCLTHAASE 601 (1109)
Q Consensus 533 ~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~-vIVVLTKaD~l 601 (1109)
... ....+. .+|++|+|++++... .......+..+... + .+ +|+|+||+|+.
T Consensus 89 -----~~~----~~~~~~--~aD~~ilVvda~~g~-~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~ 141 (405)
T 2c78_A 89 -----IKN----MITGAA--QMDGAILVVSAADGP-MPQTREHILLARQV-G----VPYIVVFMNKVDMV 141 (405)
T ss_dssp -----HHH----HHHHHT--TCSSEEEEEETTTCC-CHHHHHHHHHHHHT-T----CCCEEEEEECGGGC
T ss_pred -----HHH----HHHHHH--HCCEEEEEEECCCCC-cHHHHHHHHHHHHc-C----CCEEEEEEECcccc
Confidence 111 222233 489999998776432 22233444444332 2 45 88999999985
No 175
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.60 E-value=8.2e-08 Score=108.70 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=70.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc------ce----ecC----CCCcee-EEEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK------ST----INA----FEPATS-SVKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v------a~----Vs~----i~pgTT-rv~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
..++|+++|.+|+|||||+|+|++... +. ... ...+.| .+........++.+.||||||..+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~--- 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD--- 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH---
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH---
Confidence 458999999999999999999987310 00 000 012323 233334445679999999999743
Q ss_pred chhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCe-EEEEEeccCCC
Q 036930 534 GRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQN-AILCLTHAASE 601 (1109)
Q Consensus 534 ~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~-vIVVLTKaD~l 601 (1109)
....+...+. .+|++|+|++++... .......+..+.. .+ .+ +|+|+||+|+.
T Consensus 79 -------f~~~~~~~~~--~aD~~ilVvda~~g~-~~qt~e~l~~~~~-~~----vp~iivviNK~Dl~ 132 (397)
T 1d2e_A 79 -------YVKNMITGTA--PLDGCILVVAANDGP-MPQTREHLLLARQ-IG----VEHVVVYVNKADAV 132 (397)
T ss_dssp -------HHHHHHHTSS--CCSEEEEEEETTTCS-CHHHHHHHHHHHH-TT----CCCEEEEEECGGGC
T ss_pred -------HHHHHHhhHh--hCCEEEEEEECCCCC-CHHHHHHHHHHHH-cC----CCeEEEEEECcccC
Confidence 1112222232 589999998876532 2223344443332 22 45 78999999975
No 176
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.59 E-value=7.3e-08 Score=108.82 Aligned_cols=101 Identities=16% Similarity=0.270 Sum_probs=64.9
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK 550 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk 550 (1109)
+|+++|.+|+|||||+|+|+. .++| .+......+.+.++.||||||..+.. ..+...+ +
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~----------~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~------~~~~~~~----~ 82 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK----------KGTSSDITMYNNDKEGRNMVFVDAHSYPKTL------KSLITAL----N 82 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE----------EEEESSSEEEEECSSSSEEEEEECTTTTTCH------HHHHHHH----H
T ss_pred EEEEECCCCCCHHHHHHHHHh----------CCEEEEeeEEEEecCCeEEEEEECCChHHHH------HHHHHHH----H
Confidence 899999999999999999991 1222 23334456678899999999986521 1222222 2
Q ss_pred cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEe-ccCC
Q 036930 551 KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLT-HAAS 600 (1109)
Q Consensus 551 ~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLT-KaD~ 600 (1109)
.+|++|+|++ +. .........+..+. .++ .+.+|+|+| |+|+
T Consensus 83 --~aD~ailVvd-~~-g~~~qt~e~~~~~~-~~~---i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 83 --ISDIAVLCIP-PQ-GLDAHTGECIIALD-LLG---FKHGIIALTRSDST 125 (370)
T ss_dssp --TCSEEEEEEC-TT-CCCHHHHHHHHHHH-HTT---CCEEEEEECCGGGS
T ss_pred --HCCEEEEEEc-CC-CCcHHHHHHHHHHH-HcC---CCeEEEEEEeccCC
Confidence 4899999977 43 22222333343333 223 233489999 9997
No 177
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.58 E-value=1.9e-08 Score=113.76 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=55.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-----------------EEEEEEeCCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-----------------VKIRIFDTPGLRSP 531 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-----------------~~VtLIDTPGL~ds 531 (1109)
+++|+|+|.||||||||+|+|++.. +.++.+ |+||. +......+.+ ..+.||||||+...
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~-p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANY-PFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCC-CCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 4799999999999999999999877 566665 66554 3333344444 57999999999764
Q ss_pred Ccc-hhhhHHHHHHHHHHHhcCCCcEEEEEecCCC
Q 036930 532 AIG-RTVNKKTLASIRKSIKKFPPDVVLYVDRLDT 565 (1109)
Q Consensus 532 ~~~-~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds 565 (1109)
... .......+. .++ .+|++++|++...
T Consensus 80 a~~~~gl~~~fl~----~ir--~ad~il~VvD~~~ 108 (363)
T 1jal_A 80 ASKGEGLGNKFLA----NIR--ETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHGGGTCCHHH----HHH--TCSEEEEEEECSC
T ss_pred ccccchHHHHHHH----HHH--hcCeEEEEEecCC
Confidence 311 011112222 233 4899999976653
No 178
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.58 E-value=5.1e-08 Score=111.78 Aligned_cols=118 Identities=14% Similarity=0.161 Sum_probs=69.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCccee------------------------cC-----CCCceeE-EEEEEEEECCE
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTI------------------------NA-----FEPATSS-VKVIAGLVHGV 518 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~V------------------------s~-----i~pgTTr-v~e~~~~i~G~ 518 (1109)
..++|+++|.+|+|||||+|+|++...... .+ ...++|. +........++
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 457999999999999999999986411000 00 0133333 44445667789
Q ss_pred EEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCC------CCCCcHHHHHHHHhhhCCCCCCeEE
Q 036930 519 KIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHT------RDHNDLPLLKSLTSSLGSSVWQNAI 592 (1109)
Q Consensus 519 ~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t------~d~eD~~lLk~I~e~FG~~v~k~vI 592 (1109)
++.||||||..+.. ......+ ..+|++|+|++++... ........+..+. .++ .+++|
T Consensus 85 ~~~iiDtpG~~~f~----------~~~~~~~--~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~-~~~---~~~ii 148 (435)
T 1jny_A 85 FFTIIDAPGHRDFV----------KNMITGA--SQADAAILVVSAKKGEYEAGMSVEGQTREHIILAK-TMG---LDQLI 148 (435)
T ss_dssp EEEECCCSSSTTHH----------HHHHHTS--SCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHH-HTT---CTTCE
T ss_pred EEEEEECCCcHHHH----------HHHHhhh--hhcCEEEEEEECCCCccccccccchHHHHHHHHHH-HcC---CCeEE
Confidence 99999999985521 1122223 2589999998876521 1111222232222 223 25789
Q ss_pred EEEeccCCCC
Q 036930 593 LCLTHAASEP 602 (1109)
Q Consensus 593 VVLTKaD~l~ 602 (1109)
+|+||+|+..
T Consensus 149 vviNK~Dl~~ 158 (435)
T 1jny_A 149 VAVNKMDLTE 158 (435)
T ss_dssp EEEECGGGSS
T ss_pred EEEEcccCCC
Confidence 9999999864
No 179
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.57 E-value=3.6e-08 Score=113.29 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=76.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-EEEEEEeCCCCCCCCcch-hhhHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-VKIRIFDTPGLRSPAIGR-TVNKKTLA 543 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-~~VtLIDTPGL~ds~~~~-~~~eeIl~ 543 (1109)
+...-.|+|+|++|||||||+|+|++... .+..+ +.||. .......+++ ..++++||||+....... ......++
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~-~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~ 231 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMTRAHP-KIAPY-PFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR 231 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHCSSCC-EECCC-TTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCCc-cccCc-ccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH
Confidence 44556799999999999999999999865 55554 55554 4445555665 889999999997642110 11112221
Q ss_pred HHHHHHhcCCCcEEEEEecCCCCCCCCCcH-HHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 544 SIRKSIKKFPPDVVLYVDRLDTHTRDHNDL-PLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 544 ~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~-~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
.+. .++++|+|++++ ... ..+. ...+.+..+-.....+|.|+|+||+|..
T Consensus 232 ----~~e--ra~~lL~vvDls-~~~-~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~ 282 (416)
T 1udx_A 232 ----HIA--RTRVLLYVLDAA-DEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVDLL 282 (416)
T ss_dssp ----HHT--SSSEEEEEEETT-SCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred ----HHH--HHHhhhEEeCCc-cCC-HHHHHHHHHHHHHHhHHhhcCCEEEEEECCChh
Confidence 222 479999998876 111 0111 1222222210001237899999999974
No 180
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.57 E-value=1.5e-07 Score=110.31 Aligned_cols=115 Identities=14% Similarity=0.134 Sum_probs=69.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE--EEEE------EEEE----CCEEEEEEeCCCCCCCCcc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS--VKVI------AGLV----HGVKIRIFDTPGLRSPAIG 534 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr--v~e~------~~~i----~G~~VtLIDTPGL~ds~~~ 534 (1109)
....++|+|+|.+|||||||+|+|++.... ... ..|.. +... ...+ .+..+.||||||......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~--~~~-~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~- 113 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFD--PKE-SQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA- 113 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT-
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCC--CCC-CCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH-
Confidence 456789999999999999999999986532 111 11211 1110 0111 258899999999543221
Q ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 535 RTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 535 ~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
... .+++ .+|++|+|++++.. .....++..+..... ..|+|+|.||+|+..
T Consensus 114 --~~~-------~~l~--~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~---~~pvilV~NK~Dl~~ 164 (535)
T 3dpu_A 114 --SHQ-------FFMT--RSSVYMLLLDSRTD---SNKHYWLRHIEKYGG---KSPVIVVMNKIDENP 164 (535)
T ss_dssp --TCH-------HHHH--SSEEEEEEECGGGG---GGHHHHHHHHHHHSS---SCCEEEEECCTTTCT
T ss_pred --HHH-------HHcc--CCcEEEEEEeCCCc---hhHHHHHHHHHHhCC---CCCEEEEEECCCccc
Confidence 111 1233 38999999776542 224456666666532 479999999999864
No 181
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.54 E-value=6e-09 Score=124.37 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=57.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecC-----------------------------CCCceeE-EEEEEEEECC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINA-----------------------------FEPATSS-VKVIAGLVHG 517 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~-----------------------------i~pgTTr-v~e~~~~i~G 517 (1109)
...++|+++|.+|+|||||+|.|++........ ..+++|. .......+.+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 355799999999999999999997532111100 0234454 4455566678
Q ss_pred EEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCC----CC--CCCcHHHHHHHHhhhCCCCCCeE
Q 036930 518 VKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTH----TR--DHNDLPLLKSLTSSLGSSVWQNA 591 (1109)
Q Consensus 518 ~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~----t~--d~eD~~lLk~I~e~FG~~v~k~v 591 (1109)
+++.||||||..+.... +...+. .+|++|+|++++.. .+ .......+..+.. ++ .+++
T Consensus 255 ~~i~iiDTPGh~~f~~~------~~~~~~------~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lg---ip~i 318 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISG------MIAGAS------SADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LG---ISEI 318 (592)
T ss_dssp ----CCEEESSSEEEEE------CCC-------------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SS---CCCE
T ss_pred eEEEEEECCChHHHHHH------HHHHHh------hCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cC---CCeE
Confidence 99999999998653210 111111 37999999877632 12 3334444444433 23 2458
Q ss_pred EEEEeccCCCC
Q 036930 592 ILCLTHAASEP 602 (1109)
Q Consensus 592 IVVLTKaD~l~ 602 (1109)
|||+||+|+..
T Consensus 319 IvviNKiDl~~ 329 (592)
T 3mca_A 319 VVSVNKLDLMS 329 (592)
T ss_dssp EEEEECGGGGT
T ss_pred EEEEecccccc
Confidence 99999999753
No 182
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.54 E-value=2.4e-07 Score=110.82 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=43.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcc-eecCCCCceeE-EEEEEE---EECCEEEEEEeCCCCCCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKS-TINAFEPATSS-VKVIAG---LVHGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va-~Vs~i~pgTTr-v~e~~~---~i~G~~VtLIDTPGL~ds~ 532 (1109)
..++|+|+|+||||||||+|+|+|.... .++.....+|+ +..... ...+..+.||||||+.+..
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 3478999999999999999999998753 22221112222 211111 1257899999999998754
No 183
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.52 E-value=1.7e-08 Score=112.83 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=22.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
..+..|+|+|+||||||||+|.|++
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3467899999999999999999996
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.52 E-value=1.9e-07 Score=110.18 Aligned_cols=116 Identities=11% Similarity=0.139 Sum_probs=70.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcce---------------ecCC-----CCceeE-EEEEEEEECCEEEEEEeCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKST---------------INAF-----EPATSS-VKVIAGLVHGVKIRIFDTPG 527 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~---------------Vs~i-----~pgTTr-v~e~~~~i~G~~VtLIDTPG 527 (1109)
...+|+|+|.+|+|||||+|+|++..... +.++ ..+.|. .......+.+..+.||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 35799999999999999999998642211 1110 011111 12334567899999999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 528 LRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 528 L~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
..+.. .. ..+++. .+|++|+|++.... .......+++.+.. ...|+++|+||+|...
T Consensus 92 ~~df~------~~----~~~~l~--~aD~~IlVvDa~~g-~~~~t~~~~~~~~~-----~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 92 HEDFS------ED----TYRTLT--AVDCCLMVIDAAKG-VEDRTRKLMEVTRL-----RDTPILTFMNKLDRDI 148 (529)
T ss_dssp STTCC------HH----HHHGGG--GCSEEEEEEETTTC-SCHHHHHHHHHHTT-----TTCCEEEEEECTTSCC
T ss_pred ChhHH------HH----HHHHHH--HCCEEEEEEeCCcc-chHHHHHHHHHHHH-----cCCCEEEEEcCcCCcc
Confidence 96532 11 223343 38999999877642 22112223332221 2368999999999853
No 185
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.52 E-value=4.3e-08 Score=112.12 Aligned_cols=92 Identities=21% Similarity=0.206 Sum_probs=49.3
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-----------------EEEEEEeCCC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-----------------VKIRIFDTPG 527 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-----------------~~VtLIDTPG 527 (1109)
.+..+++|+|+|.||||||||+|+|++... .++.+ |+||. +......+.+ ..+.||||||
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~-p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENF-PFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCC-CccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 566789999999999999999999999875 66665 66665 4444444443 3599999999
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCC
Q 036930 528 LRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLD 564 (1109)
Q Consensus 528 L~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrld 564 (1109)
+...... .+.+.......++ .+|++++|++..
T Consensus 96 l~~~as~---~~glg~~~l~~ir--~aD~Il~VvD~~ 127 (396)
T 2ohf_A 96 LVKGAHN---GQGLGNAFLSHIS--ACDGIFHLTRAF 127 (396)
T ss_dssp --------------CCHHHHHHH--TSSSEEEEEEC-
T ss_pred cccccch---hhHHHHHHHHHHH--hcCeEEEEEecC
Confidence 9764321 1112112223333 389999997664
No 186
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.52 E-value=7.6e-08 Score=111.29 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=69.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc-c-----------------------eecCC-----CCcee-EEEEEEEEECCE
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK-S-----------------------TINAF-----EPATS-SVKVIAGLVHGV 518 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v-a-----------------------~Vs~i-----~pgTT-rv~e~~~~i~G~ 518 (1109)
..++|+++|.+|+|||||+|+|++... + .+.+. ..+.| .+........++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 358999999999999999999986410 0 00000 02223 233345566789
Q ss_pred EEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCC----CC--CCcHHHHHHHHhhhCCCCCCeEE
Q 036930 519 KIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHT----RD--HNDLPLLKSLTSSLGSSVWQNAI 592 (1109)
Q Consensus 519 ~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t----~d--~eD~~lLk~I~e~FG~~v~k~vI 592 (1109)
++.||||||..+ ........+ ..+|++|||++++... +. ......+..+. ..+ .+++|
T Consensus 86 ~~~iiDtPGh~~----------f~~~~~~~~--~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~~~---v~~ii 149 (458)
T 1f60_A 86 QVTVIDAPGHRD----------FIKNMITGT--SQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-TLG---VRQLI 149 (458)
T ss_dssp EEEEEECCCCTT----------HHHHHHHSS--SCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-HTT---CCEEE
T ss_pred eEEEEECCCcHH----------HHHHHHhhh--hhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-HcC---CCeEE
Confidence 999999999643 111122223 2589999998776311 10 01222333222 222 24699
Q ss_pred EEEeccCCC
Q 036930 593 LCLTHAASE 601 (1109)
Q Consensus 593 VVLTKaD~l 601 (1109)
+|+||+|+.
T Consensus 150 vviNK~Dl~ 158 (458)
T 1f60_A 150 VAVNKMDSV 158 (458)
T ss_dssp EEEECGGGG
T ss_pred EEEEccccc
Confidence 999999985
No 187
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.49 E-value=3.5e-07 Score=111.03 Aligned_cols=117 Identities=16% Similarity=0.112 Sum_probs=71.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcc-----e------ecCC-----CCcee-EEEEEEEEECCEEEEEEeCCCCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKS-----T------INAF-----EPATS-SVKVIAGLVHGVKIRIFDTPGLRS 530 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va-----~------Vs~i-----~pgTT-rv~e~~~~i~G~~VtLIDTPGL~d 530 (1109)
....+|+|+|.+|+|||||+|+|+..... . +.++ ..++| ........+.+..+.||||||..+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 34578999999999999999999832100 0 1110 11222 233445667899999999999865
Q ss_pred CCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 531 s~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.. ..+.+. +.. +|++|+|++..... ......+++.+... ..|+++|+||+|...
T Consensus 90 f~------~~~~~~----l~~--aD~~ilVvDa~~g~-~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 90 FT------IEVERS----MRV--LDGAIVVFDSSQGV-EPQSETVWRQAEKY-----KVPRIAFANKMDKTG 143 (691)
T ss_dssp CH------HHHHHH----HHH--CSEEEEEEETTTCS-CHHHHHHHHHHHHT-----TCCEEEEEECTTSTT
T ss_pred hH------HHHHHH----HHH--CCEEEEEEECCCCc-chhhHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 21 122222 332 79999998776422 22233445544432 478999999999853
No 188
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.47 E-value=1.6e-07 Score=107.33 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=65.8
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEECC-----------------EEEEEEeCCC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLVHG-----------------VKIRIFDTPG 527 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i~G-----------------~~VtLIDTPG 527 (1109)
.+..+.+|+|+|++|||||||+|+|+|...+.++.+ |+||. .......+.| ..+.++||||
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~-p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pG 94 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANY-PYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAG 94 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCC-SSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCC-CceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccc
Confidence 456789999999999999999999999876677776 66665 5555556665 4689999999
Q ss_pred CCCCCcc-hhhhHHHHHHHHHHHhcCCCcEEEEEecCC
Q 036930 528 LRSPAIG-RTVNKKTLASIRKSIKKFPPDVVLYVDRLD 564 (1109)
Q Consensus 528 L~ds~~~-~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrld 564 (1109)
+...... .......+.. ++ .+|++++|++..
T Consensus 95 l~~~~s~~e~L~~~fl~~----ir--~~d~il~Vvd~~ 126 (392)
T 1ni3_A 95 LTKGASTGVGLGNAFLSH----VR--AVDAIYQVVRAF 126 (392)
T ss_dssp GCCCCCSSSSSCHHHHHH----HT--TCSEEEEEEECC
T ss_pred cccCCcHHHHHHHHHHHH----HH--HHHHHHHHHhcc
Confidence 9764321 1122233332 33 489999997664
No 189
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.47 E-value=1.8e-07 Score=104.51 Aligned_cols=108 Identities=16% Similarity=0.226 Sum_probs=63.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHh------CCCcceecCCCCceeEEE-----------------EEE------------
Q 036930 468 DFSLNILVLGKTGVGKSATINSIF------GEEKSTINAFEPATSSVK-----------------VIA------------ 512 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLL------G~~va~Vs~i~pgTTrv~-----------------e~~------------ 512 (1109)
....+|+|+|++|||||||+|.|+ |.+++.+.. .+.++... ..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~-Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV-DPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE-C----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec-CCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 345789999999999999999996 444433322 12222100 000
Q ss_pred -----------EEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHh
Q 036930 513 -----------GLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTS 581 (1109)
Q Consensus 513 -----------~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e 581 (1109)
....+..++||||||++.+.. ..+ ..+|++|+|++...... . ..+..
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~~~-------------~~~--~~aD~vl~V~d~~~~~~---~----~~l~~ 213 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQSEV-------------AVA--NMVDTFVLLTLARTGDQ---L----QGIKK 213 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSHHH-------------HHH--TTCSEEEEEEESSTTCT---T----TTCCT
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcHHH-------------HHH--HhCCEEEEEECCCCCcc---H----HHHHH
Confidence 022578899999999865210 111 24899999977543211 1 11111
Q ss_pred hhCCCCCCeEEEEEeccCCC
Q 036930 582 SLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 582 ~FG~~v~k~vIVVLTKaD~l 601 (1109)
. ....+.++|+||+|+.
T Consensus 214 ~---~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 214 G---VLELADIVVVNKADGE 230 (355)
T ss_dssp T---SGGGCSEEEEECCCGG
T ss_pred h---HhhcCCEEEEECCCCc
Confidence 0 1125889999999974
No 190
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.44 E-value=2e-07 Score=107.97 Aligned_cols=118 Identities=13% Similarity=0.090 Sum_probs=65.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcce------------------------ecCC-----CCceeE-EEEEEEEECCE
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKST------------------------INAF-----EPATSS-VKVIAGLVHGV 518 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~------------------------Vs~i-----~pgTTr-v~e~~~~i~G~ 518 (1109)
..++|+++|.+|+|||||+|.|+...... +.+. ..++|. +......++++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 35799999999999999999997421100 0010 122222 33335567889
Q ss_pred EEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCC----C--CCCcHHHHHHHHhhhCCCCCCeEE
Q 036930 519 KIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHT----R--DHNDLPLLKSLTSSLGSSVWQNAI 592 (1109)
Q Consensus 519 ~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t----~--d~eD~~lLk~I~e~FG~~v~k~vI 592 (1109)
++.||||||..+.. ..+...+ ..+|++|+|++++... + .......+..+. ..+ .+++|
T Consensus 122 ~~~iiDtPGh~~f~----------~~~~~~~--~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~---vp~ii 185 (467)
T 1r5b_A 122 RFSLLDAPGHKGYV----------TNMINGA--SQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQG---INHLV 185 (467)
T ss_dssp EEEECCCCC---------------------T--TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTT---CSSEE
T ss_pred EEEEEECCCcHHHH----------HHHHhhc--ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcC---CCEEE
Confidence 99999999985421 1111222 2589999998876431 1 122334443332 222 23489
Q ss_pred EEEeccCCCC
Q 036930 593 LCLTHAASEP 602 (1109)
Q Consensus 593 VVLTKaD~l~ 602 (1109)
||+||+|+..
T Consensus 186 vviNK~Dl~~ 195 (467)
T 1r5b_A 186 VVINKMDEPS 195 (467)
T ss_dssp EEEECTTSTT
T ss_pred EEEECccCCC
Confidence 9999999853
No 191
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.41 E-value=1.3e-08 Score=120.48 Aligned_cols=115 Identities=14% Similarity=0.221 Sum_probs=72.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEE-CCEEEEEEeCCCCCCCCcchhhhHHHHHHH
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLV-HGVKIRIFDTPGLRSPAIGRTVNKKTLASI 545 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i-~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I 545 (1109)
..+.+|+|+|.+|+|||||+|+|++...... . .+++|. +......+ ++.+++||||||....... .
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~-~-~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~----------~ 69 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAM-E-AGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAM----------R 69 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHS-S-SCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTS----------B
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccc-c-CCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHH----------H
Confidence 3467899999999999999999997654332 2 244443 32233333 5678999999997542210 0
Q ss_pred HHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 546 RKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 546 kk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+.+. .+|++|+|++++... .......+..+... ..|+|+|+||+|+..
T Consensus 70 ~~~~~--~aD~vILVVDa~dg~-~~qt~e~l~~~~~~-----~vPiIVViNKiDl~~ 118 (537)
T 3izy_P 70 ARGTQ--VTDIVILVVAADDGV-MKQTVESIQHAKDA-----HVPIVLAINKCDKAE 118 (537)
T ss_dssp BSSSB--SBSSCEEECBSSSCC-CHHHHHHHHHHHTT-----TCCEEECCBSGGGTT
T ss_pred HHHHc--cCCEEEEEEECCCCc-cHHHHHHHHHHHHc-----CCcEEEEEecccccc
Confidence 01121 479999997776522 22233444443322 368999999999864
No 192
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.39 E-value=5.7e-07 Score=99.97 Aligned_cols=109 Identities=16% Similarity=0.190 Sum_probs=63.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHh------CCCcceecCCCCceeEEE---------------------EEE-------
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIF------GEEKSTINAFEPATSSVK---------------------VIA------- 512 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLL------G~~va~Vs~i~pgTTrv~---------------------e~~------- 512 (1109)
...+..|+++|++|+|||||+|.|+ |.++..++.. +.++... ...
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d-~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~ 131 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD-PSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLG 131 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-CC---------------CTTTTCTTEEEEEECC-----
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec-CCcCCCCcceecccchHHhhccCCCceeecCccccccc
Confidence 3556789999999999999999996 4444444432 3332210 000
Q ss_pred ------------EEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHH
Q 036930 513 ------------GLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLT 580 (1109)
Q Consensus 513 ------------~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~ 580 (1109)
..+.+.+++||||||+.+... . + . ..+|++|+|++...... ...++.
T Consensus 132 g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~------~----~---~--~~aD~vl~Vvd~~~~~~----~~~l~~-- 190 (341)
T 2p67_A 132 GASQRARELMLLCEAAGYDVVIVETVGVGQSET------E----V---A--RMVDCFISLQIAGGGDD----LQGIKK-- 190 (341)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH------H----H---H--TTCSEEEEEECC----------CCCCH--
T ss_pred hhHHHHHHHHHHhhccCCCEEEEeCCCccchHH------H----H---H--HhCCEEEEEEeCCccHH----HHHHHH--
Confidence 014578999999999975321 1 1 1 24899999977643211 000110
Q ss_pred hhhCCCCCCeEEEEEeccCCC
Q 036930 581 SSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 581 e~FG~~v~k~vIVVLTKaD~l 601 (1109)
... ..+.++|+||+|..
T Consensus 191 ~~~----~~p~ivv~NK~Dl~ 207 (341)
T 2p67_A 191 GLM----EVADLIVINKDDGD 207 (341)
T ss_dssp HHH----HHCSEEEECCCCTT
T ss_pred hhh----cccCEEEEECCCCC
Confidence 001 24779999999974
No 193
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.38 E-value=1.8e-06 Score=105.10 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=72.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcc-----------eecCC-----CCc-eeEEEEEEEEECC-------EEEEE
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKS-----------TINAF-----EPA-TSSVKVIAGLVHG-------VKIRI 522 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va-----------~Vs~i-----~pg-TTrv~e~~~~i~G-------~~VtL 522 (1109)
.....+|+|+|..|+|||||++.|+..... .+.++ ..+ |.........+.+ ..+.|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 344579999999999999999999743211 01111 112 2223334455666 89999
Q ss_pred EeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 523 FDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 523 IDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
|||||..+.. ..+.+ .+. .+|++|+|++.... .......+++.+... ..++++|+||+|...
T Consensus 87 iDTPG~~df~------~~~~~----~l~--~aD~aIlVvDa~~g-v~~qt~~~~~~~~~~-----~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFT------IEVER----SMR--VLDGAVMVYCAVGG-VQPQSETVWRQANKY-----KVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchH------HHHHH----HHH--HCCEEEEEEeCCCC-CcHHHHHHHHHHHHc-----CCCEEEEEeCCCccc
Confidence 9999986521 12222 232 27999999877642 222233344443322 368999999999753
No 194
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.35 E-value=8.6e-08 Score=112.57 Aligned_cols=114 Identities=11% Similarity=0.125 Sum_probs=73.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCcee-EEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHH
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATS-SVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRK 547 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTT-rv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk 547 (1109)
.+.+|+++|.+|+|||||+|+|++... ..+.. +++| .+......+++.+++||||||..+.... . .+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v-~~~e~-~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~--~--------~~ 70 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV-ASGEA-GGITQHIGAYHVETENGMITFLDTPGHAAFTSM--R--------AR 70 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH-SBTTB-CCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTS--B--------CS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC-ccccC-CCeeEeEEEEEEEECCEEEEEEECCCcHHHHHH--H--------HH
Confidence 457899999999999999999987432 12221 2333 2222334457889999999997553211 0 01
Q ss_pred HHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 548 SIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 548 ~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.+ ..+|++++|++++... .......+..+... ..|+|+|+||+|+..
T Consensus 71 ~~--~~aD~aILVVda~~g~-~~qT~e~l~~~~~~-----~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 71 GA--QATDIVVLVVAADDGV-MPQTIEAIQHAKAA-----QVPVVVAVNKIDKPE 117 (501)
T ss_dssp SS--BSCSSEEEEEETTTBS-CTTTHHHHHHHHHT-----TCCEEEEEECSSSST
T ss_pred HH--hhCCEEEEEeecccCc-cHHHHHHHHHHHhc-----CceEEEEEEeccccc
Confidence 11 2479999998776432 23344555544432 368999999999854
No 195
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.34 E-value=3.2e-07 Score=103.89 Aligned_cols=87 Identities=21% Similarity=0.227 Sum_probs=56.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeE-EEEEEEEE---------------------CCEEEEEEeCCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSS-VKVIAGLV---------------------HGVKIRIFDTPGL 528 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTr-v~e~~~~i---------------------~G~~VtLIDTPGL 528 (1109)
++|+|+|.||||||||+|+|++.. +.+..+ |+||. .......+ .+..+.||||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~-p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANY-PFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSC-CGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCC-CCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 579999999999999999999864 345554 44443 22222222 3467999999999
Q ss_pred CCCCcc-hhhhHHHHHHHHHHHhcCCCcEEEEEecCCC
Q 036930 529 RSPAIG-RTVNKKTLASIRKSIKKFPPDVVLYVDRLDT 565 (1109)
Q Consensus 529 ~ds~~~-~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds 565 (1109)
...... .......+..+ + .+|++++|++...
T Consensus 80 ~~~a~~~~~lg~~fl~~i----r--~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHI----R--EVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHH----H--TCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHH----H--hCCEEEEEEECCC
Confidence 765321 11222333333 3 3899999977654
No 196
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.34 E-value=2.8e-06 Score=98.51 Aligned_cols=138 Identities=14% Similarity=0.151 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhhccccc---CCCcEEEEEecCCCChhHHHHHHh------CCCcceecC--CCCce------------eE
Q 036930 451 AAKRVAEQHEIEDKDDM---DFSLNILVLGKTGVGKSATINSIF------GEEKSTINA--FEPAT------------SS 507 (1109)
Q Consensus 451 ~a~~~a~qlla~~~e~L---~~gLrIaLVGkTGVGKSSLINaLL------G~~va~Vs~--i~pgT------------Tr 507 (1109)
.+..++..++......+ ..+..|+++|++|+||||+++.|+ |..+..+.. +.++. ..
T Consensus 78 ~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvp 157 (443)
T 3dm5_A 78 IVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIE 157 (443)
T ss_dssp HHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCc
Confidence 44555555554311111 236778899999999999999998 555544432 21210 00
Q ss_pred EEEE---------------EEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCc
Q 036930 508 VKVI---------------AGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHND 572 (1109)
Q Consensus 508 v~e~---------------~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD 572 (1109)
+... .....+..++||||||...... ..+..++.......||.+++|++... . ...
T Consensus 158 v~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~------~lm~el~~i~~~~~pd~vlLVvDA~~-g--q~a 228 (443)
T 3dm5_A 158 VFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDK------ALIEEMKQISNVIHPHEVILVIDGTI-G--QQA 228 (443)
T ss_dssp EECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCH------HHHHHHHHHHHHHCCSEEEEEEEGGG-G--GGH
T ss_pred EEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCcccchH------HHHHHHHHHHHhhcCceEEEEEeCCC-c--hhH
Confidence 0000 0001357899999999865431 22233333222235899999966543 1 123
Q ss_pred HHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 573 LPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 573 ~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
...++.+.+. .....||+||+|...
T Consensus 229 ~~~a~~f~~~-----~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 229 YNQALAFKEA-----TPIGSIIVTKLDGSA 253 (443)
T ss_dssp HHHHHHHHHS-----CTTEEEEEECCSSCS
T ss_pred HHHHHHHHhh-----CCCeEEEEECCCCcc
Confidence 3344444433 245678999999753
No 197
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.31 E-value=1.4e-06 Score=104.46 Aligned_cols=114 Identities=14% Similarity=0.070 Sum_probs=61.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcce--------ecCC-----CCc-eeEEEEEEEEEC-----CEEEEEEeCCCCCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKST--------INAF-----EPA-TSSVKVIAGLVH-----GVKIRIFDTPGLRSP 531 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~--------Vs~i-----~pg-TTrv~e~~~~i~-----G~~VtLIDTPGL~ds 531 (1109)
.+|+|+|.+|+|||||+++|+...... +.+. ..+ |.........+. +..+.||||||..+.
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 589999999999999999998632111 0010 011 211222333343 378999999998552
Q ss_pred CcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 532 AIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 532 ~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
. ..+.+. +.. +|++|+|++++... .......+...... ..|+|+|+||+|+..
T Consensus 85 ~------~ev~~~----l~~--aD~aILVVDa~~gv-~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~ 137 (599)
T 3cb4_D 85 S------YEVSRS----LAA--CEGALLVVDAGQGV-EAQTLANCYTAMEM-----DLEVVPVLNKIDLPA 137 (599)
T ss_dssp H------HHHHHH----HHH--CSEEEEEEETTTCC-CTHHHHHHHHHHHT-----TCEEEEEEECTTSTT
T ss_pred H------HHHHHH----HHH--CCEEEEEEECCCCC-CHHHHHHHHHHHHC-----CCCEEEeeeccCccc
Confidence 1 122233 332 79999998776422 22233333333221 368999999999853
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.28 E-value=8.8e-07 Score=109.76 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=68.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCC--------------CCc-eeEEEEEEEEEC----------------CE
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAF--------------EPA-TSSVKVIAGLVH----------------GV 518 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i--------------~pg-TTrv~e~~~~i~----------------G~ 518 (1109)
..+|+|+|.+|+|||||+|+|++......... ..+ |.........+. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 36899999999999999999986532222111 011 111111122232 67
Q ss_pred EEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEecc
Q 036930 519 KIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHA 598 (1109)
Q Consensus 519 ~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKa 598 (1109)
.+.||||||..+... .+.. +++ .+|++|+|+++.... ......+++.+... ..++|+|+||+
T Consensus 99 ~i~liDTPG~~df~~------~~~~----~l~--~aD~ailVvDa~~g~-~~qt~~~~~~~~~~-----~~p~ilviNK~ 160 (842)
T 1n0u_A 99 LINLIDSPGHVDFSS------EVTA----ALR--VTDGALVVVDTIEGV-CVQTETVLRQALGE-----RIKPVVVINKV 160 (842)
T ss_dssp EEEEECCCCCCSSCH------HHHH----HHH--TCSEEEEEEETTTBS-CHHHHHHHHHHHHT-----TCEEEEEEECH
T ss_pred eEEEEECcCchhhHH------HHHH----HHH--hCCEEEEEEeCCCCC-CHHHHHHHHHHHHc-----CCCeEEEEECC
Confidence 899999999976331 2222 233 389999998776432 22233344433321 36899999999
Q ss_pred CCC
Q 036930 599 ASE 601 (1109)
Q Consensus 599 D~l 601 (1109)
|..
T Consensus 161 D~~ 163 (842)
T 1n0u_A 161 DRA 163 (842)
T ss_dssp HHH
T ss_pred Ccc
Confidence 975
No 199
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.27 E-value=1.4e-06 Score=110.46 Aligned_cols=117 Identities=11% Similarity=0.010 Sum_probs=70.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCc------ce---ecC-----CCCceeE-EEEEEEEECCEEEEEEeCCCCCCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEK------ST---INA-----FEPATSS-VKVIAGLVHGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~v------a~---Vs~-----i~pgTTr-v~e~~~~i~G~~VtLIDTPGL~ds~ 532 (1109)
...++|+++|.+|+|||||+|+|++... +. +.+ ...+.|. .........++++.||||||..+
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed-- 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD-- 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH--
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH--
Confidence 4568999999999999999999986310 00 000 0122221 22223445678999999999743
Q ss_pred cchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 533 IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 533 ~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
........+ ..+|++|+|++++... .......+..+.. .+ .+++|||+||+|+.
T Consensus 372 --------F~~~mi~ga--s~AD~aILVVDAtdGv-~~QTrEhL~ll~~-lg---IP~IIVVINKiDLv 425 (1289)
T 3avx_A 372 --------YVKNMITGA--AQMDGAILVVAATDGP-MPQTREHILLGRQ-VG---VPYIIVFLNKCDMV 425 (1289)
T ss_dssp --------HHHHHHHTS--CCCSEEEEEEETTTCS-CTTHHHHHHHHHH-HT---CSCEEEEEECCTTC
T ss_pred --------HHHHHHHHH--hhCCEEEEEEcCCccC-cHHHHHHHHHHHH-cC---CCeEEEEEeecccc
Confidence 112222222 2589999998876532 2334455554443 23 23378999999985
No 200
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.27 E-value=2.1e-07 Score=100.40 Aligned_cols=60 Identities=28% Similarity=0.396 Sum_probs=39.8
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCc
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAI 533 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~ 533 (1109)
++|+++|.+|||||||+|+|++.....++.. ++||+... ... .+..+.||||||+.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~-~g~T~~~~-~~~-~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ-PGITKGIQ-WFS-LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSC-EEE-CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC-CCCccceE-EEE-eCCCEEEEECCCcccCcC
Confidence 7999999999999999999999988777775 77776221 111 245789999999988653
No 201
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.25 E-value=1.6e-06 Score=103.95 Aligned_cols=115 Identities=12% Similarity=0.135 Sum_probs=63.1
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcce--------ecCC-----CCc-eeEEEEEEEEE---CC--EEEEEEeCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKST--------INAF-----EPA-TSSVKVIAGLV---HG--VKIRIFDTPGLRS 530 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~--------Vs~i-----~pg-TTrv~e~~~~i---~G--~~VtLIDTPGL~d 530 (1109)
-.+|+|+|.+|+|||||+|+|+...... +.+. ..+ |.........+ +| ..+.||||||..+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 3589999999999999999997532110 0000 011 11111112223 22 6788999999965
Q ss_pred CCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 531 PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 531 s~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
.. ..+. +.+. .+|++|+|++++... .......+...... ..|+|+|+||+|+..
T Consensus 86 F~------~ev~----r~l~--~aD~aILVVDa~~gv-~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~ 139 (600)
T 2ywe_A 86 FS------YEVS----RALA--ACEGALLLIDASQGI-EAQTVANFWKAVEQ-----DLVIIPVINKIDLPS 139 (600)
T ss_dssp GH------HHHH----HHHH--TCSEEEEEEETTTBC-CHHHHHHHHHHHHT-----TCEEEEEEECTTSTT
T ss_pred HH------HHHH----HHHH--hCCEEEEEEECCCCc-cHHHHHHHHHHHHC-----CCCEEEEEeccCccc
Confidence 21 1222 2233 379999998776422 11122233322221 368999999999853
No 202
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.24 E-value=3.8e-06 Score=101.62 Aligned_cols=117 Identities=12% Similarity=0.178 Sum_probs=73.6
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcc-----ee------cCC------CCceeEEEEEEEEECCEEEEEEeCCCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKS-----TI------NAF------EPATSSVKVIAGLVHGVKIRIFDTPGLR 529 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va-----~V------s~i------~pgTTrv~e~~~~i~G~~VtLIDTPGL~ 529 (1109)
+..+.+|+|+|++|+|||||++.|++.... .+ .++ ...|.........+.+..+.||||||..
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 445678999999999999999999843211 01 110 0112223445566788999999999985
Q ss_pred CCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 530 SPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 530 ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
+.. ..+...+ .. +|++++|+++.. ........+++.+... ..++|+|+||+|..
T Consensus 86 ~f~------~~~~~~l----~~--ad~~ilVvD~~~-g~~~qt~~~~~~~~~~-----~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFV------GEIRGAL----EA--ADAALVAVSAEA-GVQVGTERAWTVAERL-----GLPRMVVVTKLDKG 139 (665)
T ss_dssp GGH------HHHHHHH----HH--CSEEEEEEETTT-CSCHHHHHHHHHHHHT-----TCCEEEEEECGGGC
T ss_pred chH------HHHHHHH----hh--cCcEEEEEcCCc-ccchhHHHHHHHHHHc-----cCCEEEEecCCchh
Confidence 421 2222233 22 799999977543 2332234455544432 37899999999975
No 203
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.22 E-value=5.9e-07 Score=100.10 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..+..|+|+|++|+|||||+|.|+|
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999999983
No 204
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.19 E-value=1.1e-06 Score=105.04 Aligned_cols=112 Identities=15% Similarity=0.147 Sum_probs=67.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCC-ceeE-EEEEEEEE------------------CCEEEEEEeCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEP-ATSS-VKVIAGLV------------------HGVKIRIFDTPGLR 529 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~p-gTTr-v~e~~~~i------------------~G~~VtLIDTPGL~ 529 (1109)
..+|+|+|.+|+|||||+|+|++.... ...+ +.|. +...+..+ ....+.||||||..
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~---~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA---SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS---CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc---cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 568999999999999999999975332 1112 2211 11111111 12269999999986
Q ss_pred CCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 530 SPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 530 ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
+..... .+.+. .+|++|+|++++.. ........++.+... ..|+|+|+||+|+..
T Consensus 82 ~F~~~~----------~r~~~--~aD~aILVvDa~~G-v~~qT~e~l~~l~~~-----~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 82 AFTTLR----------KRGGA--LADLAILIVDINEG-FKPQTQEALNILRMY-----RTPFVVAANKIDRIH 136 (594)
T ss_dssp CCTTSB----------CSSSB--SCSEEEEEEETTTC-CCHHHHHHHHHHHHT-----TCCEEEEEECGGGST
T ss_pred HHHHHH----------HHHHh--hCCEEEEEEECCCC-ccHhHHHHHHHHHHc-----CCeEEEEeccccccc
Confidence 532110 01122 37999999887652 222234455544432 368999999999864
No 205
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.19 E-value=1.4e-06 Score=92.54 Aligned_cols=28 Identities=32% Similarity=0.428 Sum_probs=24.7
Q ss_pred ccCCCcEEEEEecC---------CCChhHHHHHHhCC
Q 036930 466 DMDFSLNILVLGKT---------GVGKSATINSIFGE 493 (1109)
Q Consensus 466 ~L~~gLrIaLVGkT---------GVGKSSLINaLLG~ 493 (1109)
.....++|+|+|.+ |||||||+|.|++.
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 34566899999999 99999999999984
No 206
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.13 E-value=4.4e-06 Score=93.58 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=66.1
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKK 551 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~ 551 (1109)
||+|+|.+||||||+++.+.+............|..+...... ...++.||||||-..-... . + ....+.+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~-~----l--~~~~yyr- 71 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEP-S----Y--DSERLFK- 71 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCC-S----H--HHHHHHT-
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccch-h----h--hhhhhcc-
Confidence 6899999999999999998865432211111122221111111 3478999999998653210 0 0 0112232
Q ss_pred CCCcEEEEEecCCCCCCCCCcHHHH-HHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 552 FPPDVVLYVDRLDTHTRDHNDLPLL-KSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 552 ~gpDVVLLVvrlds~t~d~eD~~lL-k~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++++++||.+++.. .. +....+ +++..........|+++|.||+|+..
T Consensus 72 -~a~~~IlV~Ditd~-~~-~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~ 120 (331)
T 3r7w_B 72 -SVGALVYVIDSQDE-YI-NAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120 (331)
T ss_dssp -TCSEEEEECCCSSC-TT-HHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSC
T ss_pred -CCCEEEEEEECCch-HH-HHHHHHHHHHHHHhhcCCCCcEEEEEECcccCc
Confidence 58999999777654 21 122222 22221111112468999999999864
No 207
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.08 E-value=1.1e-05 Score=93.10 Aligned_cols=118 Identities=17% Similarity=0.181 Sum_probs=66.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC------CcceecC--CCC--------------------c-eeE-EE----EEEEEE
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE------EKSTINA--FEP--------------------A-TSS-VK----VIAGLV 515 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~------~va~Vs~--i~p--------------------g-TTr-v~----e~~~~i 515 (1109)
+..|+++|++||||||+++.|++. .+..++. +.+ . |++ .. .....+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 467999999999999999999863 3332221 000 0 211 00 000012
Q ss_pred CCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCC-CeEEEE
Q 036930 516 HGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVW-QNAILC 594 (1109)
Q Consensus 516 ~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~-k~vIVV 594 (1109)
.+..++||||||..... ...+..+........||.++||++.... . + .+..+ ..|... . ..+.+|
T Consensus 179 ~~~D~vIIDT~G~~~~~------~~l~~~l~~i~~~~~~d~vllVvda~~g-~---~--~~~~~-~~~~~~-~~~i~gvV 244 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEE------KGLLEEMKQIKEITNPDEIILVIDGTIG-Q---Q--AGIQA-KAFKEA-VGEIGSII 244 (432)
T ss_dssp SSCSEEEEECCCSCSSH------HHHHHHHHHTTSSSCCSEEEEEEEGGGG-G---G--HHHHH-HHHHTT-SCSCEEEE
T ss_pred hCCCEEEEcCCCCcccc------HHHHHHHHHHHHHhcCcceeEEeecccc-H---H--HHHHH-HHHhhc-ccCCeEEE
Confidence 56789999999986531 2333444333222358999999765431 1 1 22222 233322 2 337899
Q ss_pred EeccCCC
Q 036930 595 LTHAASE 601 (1109)
Q Consensus 595 LTKaD~l 601 (1109)
+||+|..
T Consensus 245 lnK~D~~ 251 (432)
T 2v3c_C 245 VTKLDGS 251 (432)
T ss_dssp EECSSSC
T ss_pred EeCCCCc
Confidence 9999974
No 208
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.07 E-value=1.1e-05 Score=96.63 Aligned_cols=80 Identities=18% Similarity=0.126 Sum_probs=43.6
Q ss_pred EEEEEEeCCCCCCCC---cchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEE
Q 036930 518 VKIRIFDTPGLRSPA---IGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILC 594 (1109)
Q Consensus 518 ~~VtLIDTPGL~ds~---~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVV 594 (1109)
.+++|+|.||+.... .+......+...++.++.. +..++|+++..+..-. ....++.+...-. ...++|+|
T Consensus 147 p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~-~~~iil~vvt~~~d~a---~~~~l~la~~v~~--~g~rtI~V 220 (608)
T 3szr_A 147 PDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQR-QETISLVVVPSNVDIA---TTEALSMAQEVDP--EGDRTIGI 220 (608)
T ss_dssp CCEEEEECCC------CCSSCSHHHHHHHHHHHHTTS-SSCCEEEEEESSSCTT---TCHHHHHHHHHCS--SCCSEEEE
T ss_pred CceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhc-CCCCceEEEeccchhc---cHHHHHHHHHHhh--cCCceEEE
Confidence 458999999988632 2333445666666666554 3456666654332111 1123444433311 24789999
Q ss_pred EeccCCCCC
Q 036930 595 LTHAASEPP 603 (1109)
Q Consensus 595 LTKaD~l~p 603 (1109)
+||+|.+.+
T Consensus 221 lTK~Dlv~~ 229 (608)
T 3szr_A 221 LTKPDLVDK 229 (608)
T ss_dssp EECGGGSSS
T ss_pred ecchhhcCc
Confidence 999999854
No 209
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.98 E-value=1.5e-05 Score=94.50 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=73.1
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcc---------------eecCCC------CceeEEEEEEEEECCEEEEEEeCCCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKS---------------TINAFE------PATSSVKVIAGLVHGVKIRIFDTPGLR 529 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va---------------~Vs~i~------pgTTrv~e~~~~i~G~~VtLIDTPGL~ 529 (1109)
-+|+|+|..++|||||.-+|+-.... .+.++. ..|-........|++..|.||||||..
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 38999999999999999999622111 111110 111111234667899999999999998
Q ss_pred CCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 530 SPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 530 ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
|... ++.+.++ - .|.+|+|++... ........+++...+. ..|.|+++||+|...
T Consensus 112 DF~~------Ev~raL~----~--~DgAvlVvda~~-GV~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 112 DFSE------DTYRVLT----A--VDSALVVIDAAK-GVEAQTRKLMDVCRMR-----ATPVMTFVNKMDREA 166 (548)
T ss_dssp GCSH------HHHHHHH----S--CSEEEEEEETTT-BSCHHHHHHHHHHHHT-----TCCEEEEEECTTSCC
T ss_pred HHHH------HHHHHHH----h--cCceEEEeecCC-CcccccHHHHHHHHHh-----CCceEEEEecccchh
Confidence 8543 3444443 2 799888866543 3333345566665544 478999999999743
No 210
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.92 E-value=4.2e-05 Score=88.53 Aligned_cols=119 Identities=18% Similarity=0.271 Sum_probs=67.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHh------CCCcceecC--CCCce--------eE----EEEE---------------EE
Q 036930 469 FSLNILVLGKTGVGKSATINSIF------GEEKSTINA--FEPAT--------SS----VKVI---------------AG 513 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLL------G~~va~Vs~--i~pgT--------Tr----v~e~---------------~~ 513 (1109)
.+..|+++|++|+||||+++.|+ |..+..++. +.++. .. +... ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35678899999999999999998 555443321 11110 00 0000 00
Q ss_pred EECCEEEEEEeCCCCCC--CCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeE
Q 036930 514 LVHGVKIRIFDTPGLRS--PAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNA 591 (1109)
Q Consensus 514 ~i~G~~VtLIDTPGL~d--s~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~v 591 (1109)
...+..++||||||... ... ....+ +..+.+.+ .+|.+++|++... . ......++.+.+.+ ...
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~--~lm~e-l~~i~~~~---~pd~vlLVlDa~~-g--q~a~~~a~~f~~~~-----~~~ 241 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEET--KLLEE-MKEMYDVL---KPDDVILVIDASI-G--QKAYDLASRFHQAS-----PIG 241 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTT--HHHHH-HHHHHHHH---CCSEEEEEEEGGG-G--GGGHHHHHHHHHHC-----SSE
T ss_pred HhcCCCEEEEECCCCccccCCH--HHHHH-HHHHHHhh---CCcceEEEEeCcc-c--hHHHHHHHHHhccc-----CCc
Confidence 01357899999999755 321 11122 22232333 4788889865543 1 22344555555442 457
Q ss_pred EEEEeccCCC
Q 036930 592 ILCLTHAASE 601 (1109)
Q Consensus 592 IVVLTKaD~l 601 (1109)
.||+||+|..
T Consensus 242 gVIlTKlD~~ 251 (433)
T 3kl4_A 242 SVIITKMDGT 251 (433)
T ss_dssp EEEEECGGGC
T ss_pred EEEEeccccc
Confidence 7899999974
No 211
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.91 E-value=5.7e-06 Score=84.22 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+|+|+|.+|||||||+|.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 212
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.86 E-value=1.4e-05 Score=92.80 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=40.3
Q ss_pred cEEEEEecCCCChhHHHHHHhCC---------------CcceecCCCCceeEEEEEEEEEC-----------CEEEEEEe
Q 036930 471 LNILVLGKTGVGKSATINSIFGE---------------EKSTINAFEPATSSVKVIAGLVH-----------GVKIRIFD 524 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~---------------~va~Vs~i~pgTTrv~e~~~~i~-----------G~~VtLID 524 (1109)
.-|+|+|++++|||||+|.|+|. .....+ ..++|.++......+. ...|+|+|
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllD 146 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEEEEc
Confidence 45779999999999999999964 111111 1122222444444442 26799999
Q ss_pred CCCCCCCC
Q 036930 525 TPGLRSPA 532 (1109)
Q Consensus 525 TPGL~ds~ 532 (1109)
|||+.+..
T Consensus 147 TeG~~~~~ 154 (447)
T 3q5d_A 147 TQGTFDSQ 154 (447)
T ss_dssp EECCCSSH
T ss_pred CCcccccc
Confidence 99998764
No 213
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.81 E-value=2.2e-06 Score=89.74 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=26.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHh-----CCCcceecC
Q 036930 469 FSLNILVLGKTGVGKSATINSIF-----GEEKSTINA 500 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLL-----G~~va~Vs~ 500 (1109)
....++++|++||||||++|.|+ |.++..+..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 34678899999999999999998 877766653
No 214
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.65 E-value=0.00043 Score=76.03 Aligned_cols=120 Identities=20% Similarity=0.257 Sum_probs=63.9
Q ss_pred CcEEEEEecCCCChhHHHHHHh------CCCcceecC--CCCcee--------E----EEEE-------------E--EE
Q 036930 470 SLNILVLGKTGVGKSATINSIF------GEEKSTINA--FEPATS--------S----VKVI-------------A--GL 514 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLL------G~~va~Vs~--i~pgTT--------r----v~e~-------------~--~~ 514 (1109)
+-.|+++|++|+||||+++.|+ |..+..++. ..+.+. + +... . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999997 444433322 112110 0 0000 0 00
Q ss_pred ECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEE
Q 036930 515 VHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILC 594 (1109)
Q Consensus 515 i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVV 594 (1109)
..+..++||||||...... ....+..+++......+|.+++|++... . ......++.+.+. .....+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~~----~~~l~~el~~i~~~~~~d~vllVvda~~-g--~~~~~~~~~~~~~-----~~i~gvV 245 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGE----EAALLEEMKNIYEAIKPDEVTLVIDASI-G--QKAYDLASKFNQA-----SKIGTII 245 (297)
T ss_dssp HTTCSEEEEECCCSCCTTC----HHHHHHHHHHHHHHHCCSEEEEEEEGGG-G--GGHHHHHHHHHHT-----CTTEEEE
T ss_pred hCCCCEEEEeCCCCccccc----HHHHHHHHHHHHHHhcCCEEEEEeeCCc-h--HHHHHHHHHHHhh-----CCCCEEE
Confidence 1466799999999865111 1122222221111114789999966543 1 1223333333221 2336788
Q ss_pred EeccCCC
Q 036930 595 LTHAASE 601 (1109)
Q Consensus 595 LTKaD~l 601 (1109)
+||+|..
T Consensus 246 lnk~D~~ 252 (297)
T 1j8m_F 246 ITKMDGT 252 (297)
T ss_dssp EECGGGC
T ss_pred EeCCCCC
Confidence 9999964
No 215
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.60 E-value=0.00095 Score=77.13 Aligned_cols=138 Identities=15% Similarity=0.211 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhhhccccc----CCCcEEEEEecCCCChhHHHHHHh-------CCCcceecC--CCCceeE---------
Q 036930 450 EAAKRVAEQHEIEDKDDM----DFSLNILVLGKTGVGKSATINSIF-------GEEKSTINA--FEPATSS--------- 507 (1109)
Q Consensus 450 e~a~~~a~qlla~~~e~L----~~gLrIaLVGkTGVGKSSLINaLL-------G~~va~Vs~--i~pgTTr--------- 507 (1109)
..+.+.+..++......+ ..+..|+++|++|+||||++..|+ |..+..+.. +.+.+..
T Consensus 76 ~~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~ 155 (433)
T 2xxa_A 76 KIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQV 155 (433)
T ss_dssp HHHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccC
Confidence 345555555554322222 234578899999999999999998 766654433 1111100
Q ss_pred -EEEEE-----------------EEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCC
Q 036930 508 -VKVIA-----------------GLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRD 569 (1109)
Q Consensus 508 -v~e~~-----------------~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d 569 (1109)
+.... ....+..++||||||..... ...+..+........|+.+++|++... .
T Consensus 156 ~l~v~~~~~~~dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~------~~l~~~L~~~~~~~~p~~vllVvda~~-g-- 226 (433)
T 2xxa_A 156 GVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVD------EAMMDEIKQVHASINPVETLFVVDAMT-G-- 226 (433)
T ss_dssp TCEECCCCSSSCHHHHHHHHHHHHHHTTCSEEEEECCCCCTTC------HHHHHHHHHHHHHSCCSEEEEEEETTB-C--
T ss_pred CeeEEeCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccccc------HHHHHHHHHHHHhhcCcceeEEeecch-h--
Confidence 00000 01146789999999976532 122222322211224899999876543 2
Q ss_pred CCcHHHHHHHHhhhCCCCCCeEEEEEeccCCC
Q 036930 570 HNDLPLLKSLTSSLGSSVWQNAILCLTHAASE 601 (1109)
Q Consensus 570 ~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l 601 (1109)
......++.+... ..-.-+|+||+|..
T Consensus 227 ~~~~~~~~~f~~~-----l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 227 QDAANTAKAFNEA-----LPLTGVVLTKVDGD 253 (433)
T ss_dssp TTHHHHHHHHHHH-----SCCCCEEEECTTSS
T ss_pred HHHHHHHHHHhcc-----CCCeEEEEecCCCC
Confidence 1223333333222 12234689999974
No 216
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.58 E-value=0.00027 Score=78.81 Aligned_cols=120 Identities=15% Similarity=0.262 Sum_probs=64.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCC------cceecC--CCCce--------eEEE-EEEE-----------------
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEE------KSTINA--FEPAT--------SSVK-VIAG----------------- 513 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~------va~Vs~--i~pgT--------Trv~-e~~~----------------- 513 (1109)
..+-.|+|+|++|+|||||++.|++.. +...+. +.+.. .++. ....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 456788999999999999999998642 111111 00000 0000 0000
Q ss_pred -EECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEE
Q 036930 514 -LVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAI 592 (1109)
Q Consensus 514 -~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vI 592 (1109)
...+..+.++||+|....... .. ..+..+.+.+ .+|-.+++++.... ..-...++.+.+.+ ...+
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~--l~-~eL~~i~ral---~~de~llvLDa~t~---~~~~~~~~~~~~~~-----~it~ 272 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRN--LM-DEMKKIARVT---KPNLVIFVGDALAG---NAIVEQARQFNEAV-----KIDG 272 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTC--HH-HHHHHHHHHH---CCSEEEEEEEGGGT---THHHHHHHHHHHHS-----CCCE
T ss_pred HHhccchhhHHhhccchhHHHH--HH-HHHHHHHHHh---cCCCCEEEEecHHH---HHHHHHHHHHHHhc-----CCCE
Confidence 012356788999999654321 11 2222333443 37888888654332 11223344444332 3567
Q ss_pred EEEeccCCC
Q 036930 593 LCLTHAASE 601 (1109)
Q Consensus 593 VVLTKaD~l 601 (1109)
+++||.|..
T Consensus 273 iilTKlD~~ 281 (328)
T 3e70_C 273 IILTKLDAD 281 (328)
T ss_dssp EEEECGGGC
T ss_pred EEEeCcCCc
Confidence 889999963
No 217
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.53 E-value=2.9e-05 Score=93.48 Aligned_cols=113 Identities=17% Similarity=0.141 Sum_probs=73.0
Q ss_pred EEEEEecCCCChhHHHHHHhCCCcc-----e------ecCCC------CceeEEEEEEEEECCEEEEEEeCCCCCCCCcc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEKS-----T------INAFE------PATSSVKVIAGLVHGVKIRIFDTPGLRSPAIG 534 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~va-----~------Vs~i~------pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~ 534 (1109)
||+|+|..++|||||..+|+-.... . +.++. ..|-........|++..|.||||||..|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~- 82 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA- 82 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH-
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH-
Confidence 7999999999999999999621110 1 11111 1122222345567899999999999987432
Q ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 535 RTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 535 ~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
++.+.+ +- .|.+|+|++... ........+++.+.+. ..|.|+++||+|...
T Consensus 83 -----Ev~raL----~~--~DgavlVVDa~~-GV~~qT~~v~~~a~~~-----~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 -----EVYRSL----SV--LDGAILLISAKD-GVQAQTRILFHALRKM-----GIPTIFFINKIDQNG 133 (638)
T ss_dssp -----HHHHHH----TT--CSEEECCEESSC-TTCSHHHHHHHHHHHH-----TCSCEECCEECCSSS
T ss_pred -----HHHHHH----HH--hCEEEEEEeCCC-CCcHHHHHHHHHHHHc-----CCCeEEEEecccccc
Confidence 333333 32 799999977653 3333355667666654 367889999999754
No 218
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.50 E-value=0.00098 Score=73.10 Aligned_cols=119 Identities=17% Similarity=0.176 Sum_probs=65.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC-------CcceecC--CCCceeE----------EE--EE---------EEEECCE
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE-------EKSTINA--FEPATSS----------VK--VI---------AGLVHGV 518 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~-------~va~Vs~--i~pgTTr----------v~--e~---------~~~i~G~ 518 (1109)
.+-.|+|+|++|+||||+++.|++. .+..+.. +.+.... +. .. .....+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 4567889999999999999998642 2222211 1111000 00 00 0012456
Q ss_pred EEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEecc
Q 036930 519 KIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHA 598 (1109)
Q Consensus 519 ~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKa 598 (1109)
.++|+||||+.... ...+..+.+.+....++.+++|++... ....+..+.+.|.. ....-+|+||.
T Consensus 184 dlvIiDT~G~~~~~------~~~~~el~~~l~~~~~~~~~lVl~at~------~~~~~~~~~~~~~~--l~~~giVltk~ 249 (296)
T 2px0_A 184 DHVFVDTAGRNFKD------PQYIDELKETIPFESSIQSFLVLSATA------KYEDMKHIVKRFSS--VPVNQYIFTKI 249 (296)
T ss_dssp SEEEEECCCCCTTS------HHHHHHHHHHSCCCTTEEEEEEEETTB------CHHHHHHHTTTTSS--SCCCEEEEECT
T ss_pred CEEEEeCCCCChhh------HHHHHHHHHHHhhcCCCeEEEEEECCC------CHHHHHHHHHHHhc--CCCCEEEEeCC
Confidence 79999999996532 123334444443224677778854432 22335555555542 23455678999
Q ss_pred CCC
Q 036930 599 ASE 601 (1109)
Q Consensus 599 D~l 601 (1109)
|..
T Consensus 250 D~~ 252 (296)
T 2px0_A 250 DET 252 (296)
T ss_dssp TTC
T ss_pred Ccc
Confidence 964
No 219
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.46 E-value=0.00032 Score=85.46 Aligned_cols=114 Identities=14% Similarity=0.126 Sum_probs=69.6
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcc-----e------ecCCC------CceeEEEEEEEEEC-------CEEEEEEeCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKS-----T------INAFE------PATSSVKVIAGLVH-------GVKIRIFDTP 526 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va-----~------Vs~i~------pgTTrv~e~~~~i~-------G~~VtLIDTP 526 (1109)
-+|+|+|...+|||||.-+|+-.... . +.++. ..|-........|. +..|.|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 37999999999999999998732111 1 11110 11111112333443 5789999999
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCCCC
Q 036930 527 GLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAASEP 602 (1109)
Q Consensus 527 GL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~l~ 602 (1109)
|..|... ++.+.++- .|.+|+|++... ........+++...+. ..|.|+++||.|...
T Consensus 94 GHvDF~~------Ev~~aLr~------~DgavlvVDave-GV~~qT~~v~~~a~~~-----~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 94 GHVDFTI------EVERSLRV------LDGAVVVFCGTS-GVEPQSETVWRQANKY-----GVPRIVYVNKMDRQG 151 (709)
T ss_dssp SCTTCHH------HHHHHHHH------CSEEEEEEETTT-CSCHHHHHHHHHHHHH-----TCCEEEEEECSSSTT
T ss_pred CCcccHH------HHHHHHHH------hCeEEEEEECCC-CCchhHHHHHHHHHHc-----CCCeEEEEccccccC
Confidence 9987542 44444432 688888866543 3333345566666554 368899999999743
No 220
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.42 E-value=0.00024 Score=83.59 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=22.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+-.|+|+|++|+|||||++.|+|.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 345667889999999999999999863
No 221
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.34 E-value=0.00095 Score=73.60 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+-.|+|+|++|+|||||++.|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456788999999999999999985
No 222
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.16 E-value=9.2e-05 Score=82.06 Aligned_cols=60 Identities=27% Similarity=0.236 Sum_probs=34.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecCCCC------ceeEEEEEEEEECCEEEEEEeCCCCCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINAFEP------ATSSVKVIAGLVHGVKIRIFDTPGLRSP 531 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~p------gTTrv~e~~~~i~G~~VtLIDTPGL~ds 531 (1109)
.+-.++|+|++|||||||+|+|+|.....++.+.- .||+... ..... .-.|+||||+...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~-~~~~~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE-LIHTS--GGLVADTPGFSSL 237 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC-EEEET--TEEEESSCSCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH-HhhcC--CEEEecCCCcccc
Confidence 46689999999999999999999987655555421 3443111 11222 2368999999764
No 223
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.12 E-value=0.0048 Score=69.78 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+-.|+|+|++|+|||||++.|+|.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35567889999999999999999864
No 224
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.02 E-value=0.012 Score=65.24 Aligned_cols=122 Identities=19% Similarity=0.191 Sum_probs=64.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC------CcceecC--CCCc------ee-----E--EEEE-EE-------------
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE------EKSTINA--FEPA------TS-----S--VKVI-AG------------- 513 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~------~va~Vs~--i~pg------TT-----r--v~e~-~~------------- 513 (1109)
.+-.|+|+|++|+||||++..|++. .+..++. +.+. +. + +... ..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~~ 183 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFDA 183 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHHH
Confidence 4456889999999999999988642 2222221 1111 00 1 1111 00
Q ss_pred ----EECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHh---cCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCC
Q 036930 514 ----LVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIK---KFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSS 586 (1109)
Q Consensus 514 ----~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk---~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~ 586 (1109)
...+..++||||||...... ... ..+..+...+. ...+|.+++|++... . ...++.+.. |...
T Consensus 184 l~~~~~~~yD~VIIDTpg~l~~~~--~l~-~eL~~~~~vi~~~~p~~~d~vllVl~a~~-~-----~~~l~~~~~-~~~~ 253 (320)
T 1zu4_A 184 IKKAKEQNYDLLLIDTAGRLQNKT--NLM-AELEKMNKIIQQVEKSAPHEVLLVIDATT-G-----QNGVIQAEE-FSKV 253 (320)
T ss_dssp HHHHHHTTCSEEEEECCCCGGGHH--HHH-HHHHHHHHHHHTTCTTCCSEEEEEEEGGG-T-----HHHHHHHHH-HTTT
T ss_pred HHHHHhcCCCEEEEcCCCcccccH--HHH-HHHHHHHHHHhcccCCCCceEEEEEECCC-c-----HHHHHHHHH-Hhhc
Confidence 01356799999999865321 111 11222323332 124788899966542 1 234555443 4332
Q ss_pred CCCeEEEEEeccCCC
Q 036930 587 VWQNAILCLTHAASE 601 (1109)
Q Consensus 587 v~k~vIVVLTKaD~l 601 (1109)
....-+|+||.|..
T Consensus 254 -~~i~GvVltk~d~~ 267 (320)
T 1zu4_A 254 -ADVSGIILTKMDST 267 (320)
T ss_dssp -SCCCEEEEECGGGC
T ss_pred -CCCcEEEEeCCCCC
Confidence 23344779999963
No 225
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.94 E-value=0.0088 Score=65.83 Aligned_cols=26 Identities=19% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+-.|+|+|++|+|||||++.|+|.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45567889999999999999999864
No 226
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.83 E-value=0.00034 Score=79.12 Aligned_cols=60 Identities=23% Similarity=0.337 Sum_probs=36.7
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCc-ceecCCCC--c----eeEEEEEEEEECCEEEEEEeCCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEK-STINAFEP--A----TSSVKVIAGLVHGVKIRIFDTPGLRSP 531 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~v-a~Vs~i~p--g----TTrv~e~~~~i~G~~VtLIDTPGL~ds 531 (1109)
+-.++|+|++|||||||+|.|+|... ..++.+.. + ||+... .+.+.. ...++||||+.+.
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~-i~~v~q-~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAAR-LYHFPH-GGDVIDSPGVREF 281 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCE-EEECTT-SCEEEECHHHHTC
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEE-EEEECC-CCEecCcccHHHh
Confidence 34789999999999999999999876 55554311 2 332111 122221 1257999998663
No 227
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.82 E-value=0.011 Score=68.38 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+-.|+++|++|+||||++..|++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999874
No 228
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.80 E-value=0.0051 Score=67.98 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+-.|+|+|++|+||||++..|++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH
Confidence 445688999999999999999875
No 229
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.66 E-value=0.0013 Score=72.16 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=37.0
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCC------ceeEEEEEEEEECCEEEEEEeCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEP------ATSSVKVIAGLVHGVKIRIFDTPGLRS 530 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~p------gTTrv~e~~~~i~G~~VtLIDTPGL~d 530 (1109)
+-.++|+|++|+|||||+|.|+ .....++.+.- .||+... .....+. -.++||||+..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~-g~v~d~pg~~~ 228 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKG-SFVGDTPGFSK 228 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTT-EEEESSCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCC-cEEEECcCcCc
Confidence 4578999999999999999999 66555555421 1333111 1122111 36899999974
No 230
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.51 E-value=0.0011 Score=72.28 Aligned_cols=61 Identities=23% Similarity=0.200 Sum_probs=36.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCCcceecCCCC------ceeEEEEEEEEECCEEEEEEeCCCCCCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEEKSTINAFEP------ATSSVKVIAGLVHGVKIRIFDTPGLRSPA 532 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~p------gTTrv~e~~~~i~G~~VtLIDTPGL~ds~ 532 (1109)
+-.++|+|++|+|||||+|.|+|......+.+.. .||+... ...+.. .-.|+||||+....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~-~~~~~~-~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ-LLKFDF-GGYVVDTPGFANLE 235 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC-EEECTT-SCEEESSCSSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE-EEEcCC-CCEEEECcCCCccC
Confidence 3478899999999999999999987655554321 1332111 111111 13689999987643
No 231
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.32 E-value=0.0065 Score=70.84 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=41.3
Q ss_pred CCcE-EEEEecCCCChhHHHHHHh-------C----------CCcceecC-CCCceeEEEEE----EEEE-CC--EEEEE
Q 036930 469 FSLN-ILVLGKTGVGKSATINSIF-------G----------EEKSTINA-FEPATSSVKVI----AGLV-HG--VKIRI 522 (1109)
Q Consensus 469 ~gLr-IaLVGkTGVGKSSLINaLL-------G----------~~va~Vs~-i~pgTTrv~e~----~~~i-~G--~~VtL 522 (1109)
.++. |+|+|++++|||+|+|.|+ | ...|.++. ..++|+-+-.. .... .| ..|.|
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3444 5599999999999999775 2 24555544 23444433211 1111 33 56999
Q ss_pred EeCCCCCCCCc
Q 036930 523 FDTPGLRSPAI 533 (1109)
Q Consensus 523 IDTPGL~ds~~ 533 (1109)
+||.|+.+...
T Consensus 145 lDTEG~~d~~~ 155 (457)
T 4ido_A 145 MDTQGTFDSQS 155 (457)
T ss_dssp EEECCBTCTTC
T ss_pred EeccCCCCccc
Confidence 99999988754
No 232
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.10 E-value=0.066 Score=58.52 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+-.|+++|++|+||||++..|++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345678999999999999999874
No 233
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=95.86 E-value=0.023 Score=63.92 Aligned_cols=81 Identities=11% Similarity=0.088 Sum_probs=47.7
Q ss_pred EEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHH-HHHHhcCCCcEEEEEecCCCCCC------CCC-cHHHHHHH
Q 036930 508 VKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASI-RKSIKKFPPDVVLYVDRLDTHTR------DHN-DLPLLKSL 579 (1109)
Q Consensus 508 v~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~I-kk~Lk~~gpDVVLLVvrlds~t~------d~e-D~~lLk~I 579 (1109)
+......+++..+.+|||+|-.. .+.+ ..+. .+++++|||++++.... +.+ -...+.++
T Consensus 151 i~~~~~~~~~v~l~iwDtaGQe~-----------~R~~w~~yy--~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~ 217 (340)
T 4fid_A 151 IHEYDFVVKDIPFHLIDVGGQRS-----------ERKXWVSFF--SDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVF 217 (340)
T ss_dssp CEEEEEESSSCEEEEEECCSCHH-----------HHHHHHTTS--CSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHH
T ss_pred eEEEEEEeeeeeeccccCCCccc-----------ccccHHHHh--ccCCEEEEEEECCccccccccccccchHHHHHHHH
Confidence 45666677899999999999622 1111 1222 26899999988862110 000 11233333
Q ss_pred HhhhCCC--CCCeEEEEEeccCCC
Q 036930 580 TSSLGSS--VWQNAILCLTHAASE 601 (1109)
Q Consensus 580 ~e~FG~~--v~k~vIVVLTKaD~l 601 (1109)
....... ...++|+|+||+|+.
T Consensus 218 ~~i~~~~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 218 KDIMTNEFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp HHHHHCGGGTTSEEEEEEECHHHH
T ss_pred HHHhhhhccCCCeEEEEEECchhh
Confidence 3333211 236899999999974
No 234
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.47 E-value=0.0055 Score=63.94 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=40.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcc-eecCCCCceeEEEEEEEEECCEEEEEEeCCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKS-TINAFEPATSSVKVIAGLVHGVKIRIFDTPGL 528 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va-~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL 528 (1109)
.+-.|+|+|++|+|||||+|.|++.... ..... +.|||... .++++|....++|++.|
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~v-s~TTR~p~-~gE~~G~~y~fvs~~~f 76 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPV-PYTTRPPR-KSEEDGKEYHFISTEEM 76 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC-CEECSCCC-TTCCTTSSCEECCHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeee-cccccCCc-CCeeccccceeccHHHh
Confidence 4456889999999999999999976542 22333 67777211 23467777777777665
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.18 E-value=0.0079 Score=60.22 Aligned_cols=25 Identities=24% Similarity=0.530 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+-.|+|+|++|+|||||++.|++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4468899999999999999999754
No 236
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.07 E-value=0.015 Score=59.36 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=24.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
...+..|+|+|++|+|||||++.|++.-
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999998753
No 237
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.07 E-value=0.013 Score=58.20 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=23.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+-.|+|+|++|+||||+++.|++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 455667999999999999999999986
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.04 E-value=0.0074 Score=61.62 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+-.|+|+|++|+|||||++.|++.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999999974
No 239
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.02 E-value=0.0071 Score=62.39 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=26.5
Q ss_pred EEEEecCCCChhHHHHHHhCCCcceecCCCCceeEE
Q 036930 473 ILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSV 508 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv 508 (1109)
|+|+||+||||+||++.|+.+.........+.|||.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~ 39 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRT 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccC
Confidence 789999999999999999865432222223678873
No 240
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.86 E-value=0.0082 Score=60.28 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.1
Q ss_pred EEEEEecCCCChhHHHHHHhCCCc
Q 036930 472 NILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.|+|+|++|+|||||++.|++...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999997643
No 241
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.76 E-value=0.011 Score=59.88 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=21.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
.+++|+|++|+|||||++.|+|.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999864
No 242
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.74 E-value=0.014 Score=59.88 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=23.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.+.-|+|+|++|+|||||++.|++...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999998653
No 243
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.71 E-value=0.013 Score=59.92 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=23.2
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
.+..+-.++|+|++|+|||||++.|+|..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45566678999999999999999999854
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.60 E-value=0.014 Score=58.34 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
.+-.|+|+|++|+|||||++.|++..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45578999999999999999999853
No 245
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.47 E-value=0.013 Score=60.69 Aligned_cols=28 Identities=29% Similarity=0.521 Sum_probs=22.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|+|..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455678999999999999999999854
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.29 E-value=0.018 Score=60.39 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=23.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
..+--++|+|++|+|||||++.|+|...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4556789999999999999999998654
No 247
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.14 E-value=0.024 Score=59.92 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 45666789999999999999999999653
No 248
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.09 E-value=0.023 Score=56.86 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=23.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
..+..|+|+|++|+||||+++.|.+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999998764
No 249
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.99 E-value=0.026 Score=59.22 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=24.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34556789999999999999999999653
No 250
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.97 E-value=0.023 Score=61.14 Aligned_cols=27 Identities=44% Similarity=0.401 Sum_probs=23.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+-.|+|+|++|+|||||++.|+|.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 456678999999999999999999984
No 251
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.94 E-value=0.028 Score=59.53 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45666889999999999999999999643
No 252
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.83 E-value=0.025 Score=57.17 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+..|+|+|++|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999885
No 253
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.75 E-value=0.033 Score=56.57 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+|+|+|.+|||||||+|.|+..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999999864
No 254
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.73 E-value=0.032 Score=60.02 Aligned_cols=29 Identities=31% Similarity=0.298 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45666789999999999999999999643
No 255
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.64 E-value=0.031 Score=59.80 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=24.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|+|-.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455678999999999999999999964
No 256
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.63 E-value=0.037 Score=58.63 Aligned_cols=29 Identities=21% Similarity=0.111 Sum_probs=25.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45666889999999999999999999754
No 257
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.60 E-value=0.032 Score=59.50 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=24.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|+|-.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4456678999999999999999999964
No 258
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.59 E-value=0.032 Score=58.65 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=24.6
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34566789999999999999999999643
No 259
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.56 E-value=0.035 Score=59.60 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|+|-.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4566689999999999999999999953
No 260
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.48 E-value=0.037 Score=59.79 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 45666789999999999999999999643
No 261
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.47 E-value=0.033 Score=60.09 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 45566789999999999999999999653
No 262
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.45 E-value=0.038 Score=59.57 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=24.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+-.++|+|++|+|||||++.|+|-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456667899999999999999999996
No 263
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.44 E-value=0.038 Score=59.79 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=24.6
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|+|-.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566688999999999999999999964
No 264
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.44 E-value=0.035 Score=58.77 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=24.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44566789999999999999999999643
No 265
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.43 E-value=0.035 Score=60.42 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|+|-.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4456678999999999999999999964
No 266
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.41 E-value=0.036 Score=55.12 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
..+--++|+|++|+|||||++.+++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc
Confidence 3455788999999999999998764
No 267
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.35 E-value=0.04 Score=59.23 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45666789999999999999999999643
No 268
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.34 E-value=0.026 Score=58.41 Aligned_cols=28 Identities=14% Similarity=0.387 Sum_probs=18.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHh-CCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIF-GEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLL-G~~ 494 (1109)
+..+-.|+|+|++|+|||||++.|+ +..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4456678999999999999999999 764
No 269
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.28 E-value=0.039 Score=58.80 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+-.++|+|++|+|||||++.|+|-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445667899999999999999999995
No 270
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.26 E-value=0.039 Score=59.09 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 44566789999999999999999999754
No 271
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.25 E-value=0.035 Score=58.23 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=24.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34555789999999999999999999643
No 272
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.25 E-value=0.038 Score=60.08 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45666789999999999999999999653
No 273
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.25 E-value=0.52 Score=48.70 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=21.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
..+..|+|.|+||+|||++..+|+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999999975
No 274
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.24 E-value=0.032 Score=62.64 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
..+-.|+|+|++|+|||||+|+|++.-
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 345689999999999999999999864
No 275
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.20 E-value=0.044 Score=59.00 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45666789999999999999999999643
No 276
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.19 E-value=0.31 Score=56.63 Aligned_cols=74 Identities=16% Similarity=0.347 Sum_probs=47.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
+..+--|+|.||||+|||+|..+|++.- |.++..|+.+.+....... ....++.+-
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~----------------------~~~~~~v~~s~l~sk~~Ge--se~~ir~~F 267 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATI----------------------GANFIFSPASGIVDKYIGE--SARIIREMF 267 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH----------------------TCEEEEEEGGGTCCSSSSH--HHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh----------------------CCCEEEEehhhhccccchH--HHHHHHHHH
Confidence 4556789999999999999999998642 2345566777776544322 223333333
Q ss_pred HHHhcCCCcEEEEEecCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDT 565 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds 565 (1109)
..... ...+|||+..++.
T Consensus 268 ~~A~~-~~P~IifiDEiDa 285 (437)
T 4b4t_L 268 AYAKE-HEPCIIFMDEVDA 285 (437)
T ss_dssp HHHHH-SCSEEEEEECCCS
T ss_pred HHHHh-cCCceeeeecccc
Confidence 32222 2567888888874
No 277
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.14 E-value=0.076 Score=52.98 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=38.6
Q ss_pred CEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEe
Q 036930 517 GVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLT 596 (1109)
Q Consensus 517 G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLT 596 (1109)
...++|||||+.... .....+ .. +|.+++++..+... . .-..+++.+..........++.+|+|
T Consensus 75 ~yD~viiD~~~~~~~--------~~~~~l----~~--ad~viiv~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~vv~N 138 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV--------ITSAAV----MV--SDLVIIPVTPSPLD-F-SAAGSVVTVLEAQAYSRKVEARFLIT 138 (206)
T ss_dssp TSSEEEEECCSSSSH--------HHHHHH----HH--CSEEEEEECSCTTT-H-HHHHHHHHHHTTSCGGGCCEEEEEEC
T ss_pred CCCEEEEECCCCCCH--------HHHHHH----HH--CCEEEEEecCCHHH-H-HHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 467899999987531 111122 11 79999997666433 2 23344555544321111235688999
Q ss_pred ccCC
Q 036930 597 HAAS 600 (1109)
Q Consensus 597 KaD~ 600 (1109)
+++.
T Consensus 139 ~~~~ 142 (206)
T 4dzz_A 139 RKIE 142 (206)
T ss_dssp SBCT
T ss_pred ccCC
Confidence 9984
No 278
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.11 E-value=0.039 Score=61.16 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=24.4
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+..+-.|+|+|++|+|||||++.|+|-
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4566778999999999999999999864
No 279
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.09 E-value=0.043 Score=54.86 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=24.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|+.|+|||||++.|+|.-
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4556678999999999999999999865
No 280
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.07 E-value=0.043 Score=58.74 Aligned_cols=29 Identities=28% Similarity=0.524 Sum_probs=24.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44556789999999999999999999654
No 281
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.03 E-value=0.065 Score=53.01 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+-.++|+|++|+|||||+++|++.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999874
No 282
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.02 E-value=0.033 Score=61.68 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=25.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 55677899999999999999999998643
No 283
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.94 E-value=0.24 Score=52.30 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+..|+|.|+||+|||+++.+|++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999999764
No 284
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.92 E-value=0.037 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..|+|+|++|+||||+.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 285
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.91 E-value=0.048 Score=55.39 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=22.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
..+..|+|+|++|+||||+++.|+...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345679999999999999999998643
No 286
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.84 E-value=0.045 Score=55.45 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+..|+|+|++|+||||+++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999764
No 287
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.83 E-value=0.63 Score=50.65 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHhCC
Q 036930 472 NILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.++|.|++|+|||||++.+++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 288
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.72 E-value=0.041 Score=54.79 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHhC
Q 036930 472 NILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG 492 (1109)
.|+|+|++|+||||+++.|++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999986
No 289
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.71 E-value=0.059 Score=56.33 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.1
Q ss_pred CcEEEEEecCCCChhHHHHHHh---CCCc
Q 036930 470 SLNILVLGKTGVGKSATINSIF---GEEK 495 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLL---G~~v 495 (1109)
+..|+|+|++|+||||+++.|+ |...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4689999999999999999999 7654
No 290
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.70 E-value=0.057 Score=57.47 Aligned_cols=28 Identities=39% Similarity=0.428 Sum_probs=23.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+.. -.++|+|++|+|||||++.|+|-..
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344 5688999999999999999999643
No 291
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.56 E-value=0.062 Score=58.86 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 45666889999999999999999999643
No 292
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.55 E-value=0.049 Score=55.13 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+-.++|+|++|+|||||++.|++.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 455667899999999999999999874
No 293
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.53 E-value=0.077 Score=53.68 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=25.7
Q ss_pred cccCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 465 DDMDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 465 e~L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
..+..+..|+|+|++|+||||+.+.|.+..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345667789999999999999999999863
No 294
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.52 E-value=0.052 Score=56.90 Aligned_cols=27 Identities=30% Similarity=0.183 Sum_probs=22.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+..|+|+|++|+|||||++.|++.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456678999999999999999999774
No 295
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.52 E-value=0.051 Score=61.32 Aligned_cols=26 Identities=46% Similarity=0.433 Sum_probs=22.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+-.|+|+|+||+|||||+++|++.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 44567999999999999999999974
No 296
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.41 E-value=0.044 Score=64.59 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..|+|+|+||+|||||+|+|++.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 456999999999999999999984
No 297
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.40 E-value=0.046 Score=56.94 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=24.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINA 500 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~ 500 (1109)
.+-.++|+|++|+|||||++.|+|. ....+.
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~ 51 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQ 51 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCcCCe
Confidence 3457899999999999999999997 433333
No 298
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.32 E-value=0.058 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+..|+|+|++|+||||+++.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999874
No 299
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.30 E-value=0.055 Score=61.00 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..|+|+|++|+|||||+++|+|.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 347999999999999999999874
No 300
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.26 E-value=0.039 Score=61.26 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=22.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhCCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+-.|+|+|++|+|||||+|.|+|.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999999853
No 301
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.19 E-value=0.07 Score=57.62 Aligned_cols=27 Identities=26% Similarity=0.548 Sum_probs=23.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+. +-.++|+|++|+|||||++.|+|..
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 6688999999999999999999964
No 302
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.16 E-value=0.62 Score=53.65 Aligned_cols=74 Identities=14% Similarity=0.282 Sum_probs=45.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
+..+--|+|.||||+|||+|..+|++.. +.++..|+.+.+...... ..+..++.+-
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~----------------------~~~f~~v~~s~l~sk~vG--ese~~vr~lF 234 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHT----------------------DCKFIRVSGAELVQKYIG--EGSRMVRELF 234 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHH----------------------TCEEEEEEGGGGSCSSTT--HHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhh----------------------CCCceEEEhHHhhccccc--hHHHHHHHHH
Confidence 4455679999999999999999998742 223445566666554322 1223333333
Q ss_pred HHHhcCCCcEEEEEecCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDT 565 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds 565 (1109)
...+. ...+|||+..++.
T Consensus 235 ~~Ar~-~aP~IIFiDEiDa 252 (405)
T 4b4t_J 235 VMARE-HAPSIIFMDEIDS 252 (405)
T ss_dssp HHHHH-TCSEEEEEESSSC
T ss_pred HHHHH-hCCceEeeecchh
Confidence 33332 2567888888875
No 303
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.13 E-value=0.062 Score=59.35 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=24.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
...+..|+|+|++|+|||||++.|.|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 567788999999999999999999874
No 304
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.05 E-value=0.053 Score=55.67 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.9
Q ss_pred EEEEEecCCCChhHHHHHHhCCC
Q 036930 472 NILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+|+|+|++|+|||||++.|+|..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999999854
No 305
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.02 E-value=0.078 Score=60.07 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=24.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 45566789999999999999999999653
No 306
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.01 E-value=0.12 Score=54.49 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.0
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
....+..|+|+|++|+||||+.+.|...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4556788999999999999999999753
No 307
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.98 E-value=0.064 Score=54.58 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+.+|+|+|++|+||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999763
No 308
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.96 E-value=0.64 Score=54.48 Aligned_cols=74 Identities=15% Similarity=0.293 Sum_probs=45.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
+..+--|+|.||||+|||+|..+|+++- +.+|..++.+.+....... .+..++.+-
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~----------------------~~~fi~vs~s~L~sk~vGe--sek~ir~lF 295 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRT----------------------DATFIRVIGSELVQKYVGE--GARMVRELF 295 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHH----------------------TCEEEEEEGGGGCCCSSSH--HHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhcc----------------------CCCeEEEEhHHhhcccCCH--HHHHHHHHH
Confidence 4566789999999999999999998642 2234556666665543321 223333333
Q ss_pred HHHhcCCCcEEEEEecCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDT 565 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds 565 (1109)
..... ..-+|||+..++.
T Consensus 296 ~~Ar~-~aP~IIfiDEiDa 313 (467)
T 4b4t_H 296 EMART-KKACIIFFDEIDA 313 (467)
T ss_dssp HHHHH-TCSEEEEEECCTT
T ss_pred HHHHh-cCCceEeeccccc
Confidence 32222 2457888877774
No 309
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.92 E-value=0.07 Score=52.30 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..|+|+|++|+||||+++.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457899999999999999998753
No 310
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.90 E-value=0.075 Score=54.46 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..+-.++|+|++|+|||||++.|++
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 44566789999999999999999983
No 311
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.89 E-value=0.14 Score=51.97 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=22.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
...+..|+|+|++|+||||+++.|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45567899999999999999999986
No 312
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.72 E-value=0.085 Score=59.68 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=24.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|+|-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4456678999999999999999999964
No 313
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.70 E-value=0.079 Score=59.89 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=24.6
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 44556789999999999999999999653
No 314
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.69 E-value=0.31 Score=51.42 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
....|+|.|+||+|||++..+|+..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4467999999999999999999863
No 315
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.67 E-value=0.087 Score=59.67 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=24.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 44566789999999999999999999653
No 316
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.61 E-value=0.088 Score=50.30 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=18.5
Q ss_pred cEEEEEecCCCChhHHHHHH
Q 036930 471 LNILVLGKTGVGKSATINSI 490 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaL 490 (1109)
..|+|+|++|+||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 317
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.59 E-value=0.089 Score=60.07 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 45566789999999999999999999654
No 318
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.57 E-value=0.09 Score=50.74 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=19.6
Q ss_pred EEEEEecCCCChhHHHHHHhCC
Q 036930 472 NILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.|+|+|++|+||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999743
No 319
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.56 E-value=0.71 Score=53.45 Aligned_cols=73 Identities=12% Similarity=0.331 Sum_probs=44.6
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
+..+--|+|.||||+|||+|+.+|++.- +.++..|+.+.+....... ....++.+-
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~----------------------~~~~~~v~~~~l~~~~~Ge--~e~~ir~lF 258 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANST----------------------KAAFIRVNGSEFVHKYLGE--GPRMVRDVF 258 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHH----------------------TCEEEEEEGGGTCCSSCSH--HHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh----------------------CCCeEEEecchhhccccch--hHHHHHHHH
Confidence 3445569999999999999999998632 2345556666665544321 222233332
Q ss_pred HHHhcCCCcEEEEEecCC
Q 036930 547 KSIKKFPPDVVLYVDRLD 564 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrld 564 (1109)
...+. ...+|+|+..++
T Consensus 259 ~~A~~-~aP~IifiDEiD 275 (428)
T 4b4t_K 259 RLARE-NAPSIIFIDEVD 275 (428)
T ss_dssp HHHHH-TCSEEEEEECTH
T ss_pred HHHHH-cCCCeeechhhh
Confidence 22222 245778887666
No 320
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.50 E-value=0.092 Score=59.65 Aligned_cols=29 Identities=31% Similarity=0.505 Sum_probs=24.8
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 45566789999999999999999999653
No 321
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.49 E-value=0.6 Score=54.27 Aligned_cols=74 Identities=14% Similarity=0.253 Sum_probs=45.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
+..+--|+|.||||+|||+|..+|++.. +.++..++.+-+...... ..+..++.+-
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~----------------------~~~fi~v~~s~l~sk~vG--esek~ir~lF 268 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQT----------------------SATFLRIVGSELIQKYLG--DGPRLCRQIF 268 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHH----------------------TCEEEEEESGGGCCSSSS--HHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHh----------------------CCCEEEEEHHHhhhccCc--hHHHHHHHHH
Confidence 4455679999999999999999998742 223445566666554332 2223333333
Q ss_pred HHHhcCCCcEEEEEecCCC
Q 036930 547 KSIKKFPPDVVLYVDRLDT 565 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrlds 565 (1109)
..... ...+|||+..++.
T Consensus 269 ~~Ar~-~aP~IIfiDEiDa 286 (437)
T 4b4t_I 269 KVAGE-NAPSIVFIDEIDA 286 (437)
T ss_dssp HHHHH-TCSEEEEEEEESS
T ss_pred HHHHh-cCCcEEEEehhhh
Confidence 33332 2457888877774
No 322
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.45 E-value=0.096 Score=50.92 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.1
Q ss_pred cEEEEEecCCCChhHHHHHHhC
Q 036930 471 LNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG 492 (1109)
..|+|+|++|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 323
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.45 E-value=0.094 Score=59.59 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=24.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 44566789999999999999999999653
No 324
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.44 E-value=0.11 Score=51.25 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+..|+|+|.+|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999864
No 325
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=91.41 E-value=0.15 Score=55.68 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=23.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
...+..|+|+|++|+|||||.+.|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345778999999999999999999864
No 326
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.35 E-value=0.1 Score=51.26 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..|+|.|++|+||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999964
No 327
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.31 E-value=0.081 Score=60.91 Aligned_cols=24 Identities=46% Similarity=0.480 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+-.|+|+|+||+|||||+++|++.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999999974
No 328
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.30 E-value=0.085 Score=53.00 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=20.3
Q ss_pred cEEEEEecCCCChhHHHHHHhC
Q 036930 471 LNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+|+|+|++|+||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 329
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.30 E-value=0.1 Score=52.67 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+-.|+|+|++|+||||+.+.|++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 455899999999999999999975
No 330
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.29 E-value=0.092 Score=59.59 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=24.5
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 34555789999999999999999999654
No 331
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.25 E-value=0.2 Score=54.40 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+..|+|+|++|+||||+.+.|+.+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999753
No 332
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.18 E-value=0.099 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+..|+|+|++|+||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999973
No 333
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.14 E-value=0.11 Score=59.43 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=24.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+=.++|+|++|+|||||++.|+|-.
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4566678999999999999999999953
No 334
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.09 E-value=0.11 Score=50.77 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..|+|+|++|+||||+.+.|..+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999753
No 335
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.01 E-value=0.11 Score=52.41 Aligned_cols=22 Identities=23% Similarity=0.274 Sum_probs=20.3
Q ss_pred cEEEEEecCCCChhHHHHHHhC
Q 036930 471 LNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG 492 (1109)
..|+|+|++|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 336
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.98 E-value=0.23 Score=47.62 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+-.|+|.|++|+|||++++.|+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998753
No 337
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.97 E-value=0.12 Score=54.64 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHh
Q 036930 469 FSLNILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLL 491 (1109)
.+..|+|+|++|+||||+++.|+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 338
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.91 E-value=0.08 Score=59.62 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=24.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 45566789999999999999999999653
No 339
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.72 E-value=0.055 Score=54.82 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=20.3
Q ss_pred EEEEEecCCCChhHHHHHHhCC
Q 036930 472 NILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.|+|+|++|+|||||++.|++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999975
No 340
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.70 E-value=0.078 Score=59.08 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=24.7
Q ss_pred ccCC--CcEEEEEecCCCChhHHHHHHhCCC
Q 036930 466 DMDF--SLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 466 ~L~~--gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
.+.. +-+++|+|++|+|||||++.|+|..
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3444 6789999999999999999999864
No 341
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.70 E-value=0.66 Score=53.82 Aligned_cols=73 Identities=19% Similarity=0.306 Sum_probs=44.5
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCcceecCCCCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHH
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEKSTINAFEPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIR 546 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~i~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ik 546 (1109)
+..+--|+|.||||+|||+|..+|++.- +.++..++.+.+....... ....++.+-
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~----------------------~~~f~~v~~s~l~~~~vGe--se~~ir~lF 267 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT----------------------NATFLKLAAPQLVQMYIGE--GAKLVRDAF 267 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH----------------------TCEEEEEEGGGGCSSCSSH--HHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh----------------------CCCEEEEehhhhhhcccch--HHHHHHHHH
Confidence 4556789999999999999999998742 2234455666665543221 223333332
Q ss_pred HHHhcCCCcEEEEEecCC
Q 036930 547 KSIKKFPPDVVLYVDRLD 564 (1109)
Q Consensus 547 k~Lk~~gpDVVLLVvrld 564 (1109)
...+. ...+|||+..++
T Consensus 268 ~~A~~-~aP~IifiDEiD 284 (434)
T 4b4t_M 268 ALAKE-KAPTIIFIDELD 284 (434)
T ss_dssp HHHHH-HCSEEEEEECTH
T ss_pred HHHHh-cCCeEEeecchh
Confidence 22222 245788887776
No 342
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.69 E-value=0.11 Score=56.85 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=23.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+..|+|+|++|+|||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55678999999999999999999874
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.65 E-value=0.12 Score=52.33 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHhC
Q 036930 471 LNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG 492 (1109)
++|+|+|++|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 344
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.64 E-value=0.14 Score=51.04 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+..|+|+|.+|+||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 345
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.58 E-value=0.13 Score=51.11 Aligned_cols=21 Identities=33% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEEecCCCChhHHHHHHhC
Q 036930 472 NILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG 492 (1109)
.|+|+|.+|+||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999975
No 346
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.49 E-value=0.45 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=19.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHh
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLL 491 (1109)
+..++ .+|+|++|+||||++++|+
T Consensus 21 ~~~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 21 FQSGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp CCSEE-EEEECCTTSSHHHHHHHHH
T ss_pred cCCCe-EEEECCCCCCHHHHHHHHH
Confidence 34454 5599999999999999987
No 347
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.46 E-value=0.076 Score=59.82 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+-.++|+|++|+|||||++.|+|-..
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45566789999999999999999999653
No 348
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.35 E-value=0.13 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.8
Q ss_pred cEEEEEecCCCChhHHHHHHhC
Q 036930 471 LNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG 492 (1109)
++|+|+|++|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 349
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.31 E-value=0.11 Score=51.10 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
.+-.++|+|++|+|||||+++|++.-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45578899999999999999999743
No 350
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.31 E-value=0.14 Score=50.15 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHhC
Q 036930 472 NILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG 492 (1109)
.|+|.|.+|+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 351
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.29 E-value=0.12 Score=53.71 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=24.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
...+.-|+|+|+.|+||||+++.|.+.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 456778999999999999999999885
No 352
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.25 E-value=0.16 Score=50.70 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+.+|+|+|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999764
No 353
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.24 E-value=0.14 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
...|+|+|++|+||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 354
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.18 E-value=0.14 Score=60.76 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=22.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
.+-.++|+|++|+|||||++.|+|-.
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 34478999999999999999999964
No 355
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=90.14 E-value=0.2 Score=52.70 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
..+++|+|+|++|+||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999964
No 356
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.13 E-value=0.15 Score=50.83 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 357
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.10 E-value=0.15 Score=52.03 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999864
No 358
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.09 E-value=0.12 Score=52.01 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..+-.++|+|++|+|||||++.|++
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44566788999999999999999984
No 359
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.04 E-value=0.11 Score=54.19 Aligned_cols=21 Identities=38% Similarity=0.755 Sum_probs=19.8
Q ss_pred EEEEecCCCChhHHHHHHhCC
Q 036930 473 ILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~ 493 (1109)
|+|+|++|+|||||+++|++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999874
No 360
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=89.87 E-value=0.19 Score=49.76 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=21.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
..+..|+|+|.+|+||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999864
No 361
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.87 E-value=0.18 Score=50.57 Aligned_cols=24 Identities=21% Similarity=0.212 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+..|+|.|.+|+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999974
No 362
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.84 E-value=0.17 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
...|+|+|++|+||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999964
No 363
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.84 E-value=0.18 Score=50.76 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.9
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
..++.|+|+|.+|+||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 364
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.84 E-value=0.16 Score=49.83 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 365
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.83 E-value=0.18 Score=50.56 Aligned_cols=24 Identities=21% Similarity=0.129 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+..|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999974
No 366
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.80 E-value=0.16 Score=60.04 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=25.9
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.+..+=.++|+|++|+|||||++.|+|...
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356777899999999999999999999643
No 367
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.78 E-value=0.12 Score=52.52 Aligned_cols=23 Identities=13% Similarity=0.245 Sum_probs=20.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..|+|+|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999874
No 368
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.76 E-value=0.19 Score=49.48 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=19.8
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
..+ -.+|+|++|+||||++.+|.+
T Consensus 25 ~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 25 SKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp CSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHH
Confidence 344 567999999999999999854
No 369
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.74 E-value=0.14 Score=60.98 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.+-.++|+|++|+|||||++.|+|-..
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 344789999999999999999999643
No 370
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.65 E-value=0.16 Score=60.73 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.+-.++|+|++|+|||||++.|+|-..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 445789999999999999999999653
No 371
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=89.65 E-value=0.16 Score=60.44 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
..+-.++|+|++|+|||||++.|+|-..
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445789999999999999999999643
No 372
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.62 E-value=0.17 Score=51.82 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+..|+|+|++|+||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999864
No 373
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.61 E-value=0.12 Score=55.65 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEecCCCChhHHHHHHhCC
Q 036930 473 ILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~ 493 (1109)
|+|+|++|+|||||+++|++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999974
No 374
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.60 E-value=0.14 Score=59.74 Aligned_cols=27 Identities=11% Similarity=0.236 Sum_probs=23.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.+-+++|+|++|+|||||++.|+|-..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 566899999999999999999998653
No 375
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.51 E-value=0.18 Score=51.83 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+..|+|+|++|+||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999974
No 376
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.17 E-value=0.18 Score=54.01 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=23.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+--++|+|++|+|||||++.|++.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 455667899999999999999999874
No 377
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.15 E-value=0.15 Score=57.14 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-+++|+|++|+|||||++.|+|..
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556799999999999999999999864
No 378
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.12 E-value=0.2 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.8
Q ss_pred cEEEEEecCCCChhHHHHHHhC
Q 036930 471 LNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG 492 (1109)
++|+|+|++|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 379
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.04 E-value=0.14 Score=60.89 Aligned_cols=27 Identities=30% Similarity=0.233 Sum_probs=23.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.+-.++|+|++|+|||||++.|+|-..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 445789999999999999999998643
No 380
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.99 E-value=0.18 Score=49.84 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+..|+|+|.+|+||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999763
No 381
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.93 E-value=0.75 Score=50.49 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+-.|+|.|+||+|||+|..+|+..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHH
Confidence 34467999999999999999999864
No 382
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.92 E-value=0.34 Score=46.69 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.-.|+|.|++|+|||+++..|+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988753
No 383
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=88.88 E-value=0.2 Score=50.41 Aligned_cols=26 Identities=15% Similarity=-0.019 Sum_probs=23.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..+-.++|+|++|+|||||++.|++
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 55666889999999999999999997
No 384
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.85 E-value=0.23 Score=49.23 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..|+|+|.+|+||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 385
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.79 E-value=0.16 Score=60.55 Aligned_cols=27 Identities=37% Similarity=0.327 Sum_probs=23.2
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.+-.++|+|++|+|||||++.|+|-..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 445789999999999999999998643
No 386
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.75 E-value=0.23 Score=49.27 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=22.6
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+..|+|+|.+|+||||+++.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999754
No 387
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.71 E-value=0.24 Score=49.20 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
....|+|+|++|+||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3567999999999999999999865
No 388
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=88.67 E-value=0.53 Score=53.15 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=48.2
Q ss_pred eeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCC------C-CcHHHHH
Q 036930 505 TSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRD------H-NDLPLLK 577 (1109)
Q Consensus 505 TTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d------~-eD~~lLk 577 (1109)
|+-+......+++..+.+|||+|-..-.. . ...++. ++++||||++++..... . .-...+.
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~------~----w~~~f~--~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~ 255 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERK------R----WFECFD--SVTSILFLVSSSEFDQVLMEDRQTNRLTESLN 255 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-----------------CTTSCT--TCCEEEEEEETTCTTCEETTEEEEEHHHHHHH
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhh------h----HHHHhC--CCCEEEEEEECccccccccccccccHHHHHHH
Confidence 43455566777899999999999843210 0 011222 58999999888763210 0 0122333
Q ss_pred HHHhhhCCC--CCCeEEEEEeccCCC
Q 036930 578 SLTSSLGSS--VWQNAILCLTHAASE 601 (1109)
Q Consensus 578 ~I~e~FG~~--v~k~vIVVLTKaD~l 601 (1109)
++....... ...++|+|+||+|+.
T Consensus 256 ~~~~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 256 IFETIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp HHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHhcchhhCCCCEEEEEEChhhh
Confidence 333333221 236899999999985
No 389
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=88.63 E-value=0.23 Score=55.81 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=50.9
Q ss_pred eeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCC-------CCCcHHHHH
Q 036930 505 TSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTR-------DHNDLPLLK 577 (1109)
Q Consensus 505 TTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~-------d~eD~~lLk 577 (1109)
|+.+......+++..+.+|||+|-..-.. .+ ..+.. ++++||||++++.... ...-...+.
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~------~w----~~yf~--~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~ 247 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERK------KW----IHCFE--GVTAIIFCVALSDYDLVLAEDEEMNRMHESMK 247 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGG------GG----GGGCT--TCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhH------HH----HHHHh--cCCEEEEEEECccccccccccchhhhHHHHHH
Confidence 44455666777899999999999643210 00 11222 5899999988876321 000123334
Q ss_pred HHHhhhCCC--CCCeEEEEEeccCCC
Q 036930 578 SLTSSLGSS--VWQNAILCLTHAASE 601 (1109)
Q Consensus 578 ~I~e~FG~~--v~k~vIVVLTKaD~l 601 (1109)
++....... ...|+|+|+||+|+.
T Consensus 248 ~~~~i~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 248 LFDSICNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp HHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHHHHcCccccCCcEEEEEECcCch
Confidence 444433221 237899999999974
No 390
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.58 E-value=2.9 Score=47.96 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+-.|+|.|+||+|||+|..+|+..
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999864
No 391
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=88.54 E-value=0.16 Score=53.91 Aligned_cols=21 Identities=38% Similarity=0.755 Sum_probs=19.8
Q ss_pred EEEEecCCCChhHHHHHHhCC
Q 036930 473 ILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~ 493 (1109)
|+|+|++|+|||||+++|++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999874
No 392
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.51 E-value=0.2 Score=57.98 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=24.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-+++|+|++|+|||||++.|+|..
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5567799999999999999999999854
No 393
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.49 E-value=0.94 Score=48.09 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+-.|+|.|+||+|||+++++|++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3568999999999999999999863
No 394
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=88.45 E-value=0.19 Score=55.98 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=22.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
-..++-|+|+|++|+|||||++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999998753
No 395
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.45 E-value=0.23 Score=48.93 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+..|+|+|.+|+||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345799999999999999999973
No 396
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.24 E-value=0.25 Score=58.64 Aligned_cols=29 Identities=34% Similarity=0.432 Sum_probs=24.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
...+=.++|+|+.|+|||||++.|+|.-.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34555688999999999999999999653
No 397
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.15 E-value=0.27 Score=54.09 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
-.++|+|++|+|||||++.|++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35889999999999999999874
No 398
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=88.15 E-value=0.25 Score=59.52 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=25.9
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.+..+=.++|+|++|+|||||++.|+|...
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 356777899999999999999999999653
No 399
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=88.04 E-value=0.26 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+++|+|+|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999864
No 400
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.04 E-value=0.25 Score=47.76 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHhC
Q 036930 471 LNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG 492 (1109)
++|+|.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 401
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.00 E-value=0.18 Score=65.72 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
..+=+|+|||+||+|||||++.|++-.
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 345589999999999999999999854
No 402
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.92 E-value=0.21 Score=50.98 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=23.5
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+-.++|+|++|+|||||+..|++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 456667899999999999999999974
No 403
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=87.83 E-value=0.15 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.7
Q ss_pred EEEEEecCCCChhHHHHHHhCC
Q 036930 472 NILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.|+|+|.+|+||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999753
No 404
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=87.76 E-value=0.19 Score=55.27 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEecCCCChhHHHHHHhCCC
Q 036930 472 NILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
.++|+|+.|+|||||+|.|++..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 35799999999999999999753
No 405
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.76 E-value=0.23 Score=48.80 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHhC
Q 036930 472 NILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG 492 (1109)
+|+|+|++|+||||+...|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999974
No 406
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.75 E-value=0.32 Score=58.64 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=25.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 45566889999999999999999999654
No 407
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=87.71 E-value=0.29 Score=47.93 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..|+|+|.+|+||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999864
No 408
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.65 E-value=0.29 Score=49.82 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
++.|+|.|.+|+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999975
No 409
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.57 E-value=0.3 Score=48.95 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
....|+|+|.+|+||||+.+.|+.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999974
No 410
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=87.56 E-value=0.55 Score=47.27 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+-.|+|.|++|+|||+++..|+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999875
No 411
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=87.52 E-value=0.28 Score=48.45 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHHHhC
Q 036930 472 NILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG 492 (1109)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 412
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=87.43 E-value=0.29 Score=48.09 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEEecCCCChhHHHHHHhC
Q 036930 472 NILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG 492 (1109)
.|+|.|.+|+||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999975
No 413
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=87.42 E-value=0.24 Score=48.56 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=16.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..|+|.|.+|+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 414
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=87.21 E-value=0.65 Score=51.91 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=50.2
Q ss_pred eeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCC-------CCCCcHHHHH
Q 036930 505 TSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHT-------RDHNDLPLLK 577 (1109)
Q Consensus 505 TTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t-------~d~eD~~lLk 577 (1109)
|+-+......+++.++.+|||+|-..-. .....+.+ +++++|||++++.+. ....-...+.
T Consensus 154 TiGi~~~~~~~~~v~l~iwDtgGQe~~R----------~~w~~yf~--~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~ 221 (327)
T 3ohm_A 154 TTGIIEYPFDLQSVIFRMVDVGGQRSER----------RKWIHCFE--NVTSIMFLVALSEYDQVLVESDNENRMEESKA 221 (327)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSHHHH----------TTGGGGCS--SCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHH
T ss_pred eeeEEEEEEEeeceeeEEEEcCCchhHH----------HHHHHHhC--CCCEEEEEEECccccccccccccHhHHHHHHH
Confidence 4445666777899999999999973210 00112222 589999998765211 0000123344
Q ss_pred HHHhhhCCC--CCCeEEEEEeccCCCC
Q 036930 578 SLTSSLGSS--VWQNAILCLTHAASEP 602 (1109)
Q Consensus 578 ~I~e~FG~~--v~k~vIVVLTKaD~l~ 602 (1109)
++....... ...++|+|+||+|+..
T Consensus 222 ~~~~i~~~~~~~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 222 LFRTIITYPWFQNSSVILFLNKKDLLE 248 (327)
T ss_dssp HHHHHHTSGGGTTCEEEEEEECHHHHH
T ss_pred HHHHHhhhhccCCceEEEEEECchhhh
Confidence 444443321 2368999999999753
No 415
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=87.16 E-value=0.34 Score=49.37 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=22.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+..|+|+|.+|+||||+.+.|.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998763
No 416
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.15 E-value=0.33 Score=50.30 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+.+|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.07 E-value=0.3 Score=50.44 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.7
Q ss_pred cEEEEEecCCCChhHHHHHHhC
Q 036930 471 LNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG 492 (1109)
+.|+|+|++|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 418
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=87.03 E-value=0.7 Score=46.19 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.6
Q ss_pred cEEEEEecCCCChhHHHHHHhCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..|+|.|++|+|||+|+.+|+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999998853
No 419
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.98 E-value=0.28 Score=52.09 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=19.4
Q ss_pred EEEEEecCCCChhHHHHHHhCC
Q 036930 472 NILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.|+|+|+||+||||+.+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4789999999999999999753
No 420
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=86.96 E-value=0.68 Score=49.22 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.5
Q ss_pred cEEEEEecCCCChhHHHHHHhCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..|+|+|+||+|||++..+|.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47999999999999999998863
No 421
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.91 E-value=0.29 Score=51.15 Aligned_cols=25 Identities=32% Similarity=0.597 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+..|+|+|++|+||||++.+|++.
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3456999999999999999999863
No 422
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=86.72 E-value=0.13 Score=57.59 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.7
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHh
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLL 491 (1109)
.+..+ .++|+|++|+|||||+++|.
T Consensus 57 ~~~~G-~~~lvG~NGaGKStLl~aI~ 81 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSIIVDALG 81 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHHTHHHH
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHH
Confidence 45677 88999999999999998884
No 423
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=86.52 E-value=0.38 Score=56.93 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=25.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCcc
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEKS 496 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~va 496 (1109)
..+=.++|+|+.|+|||||++.|+|....
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 338 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEP 338 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45668899999999999999999997543
No 424
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=86.43 E-value=0.35 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..|+|+|.+|+||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 425
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.42 E-value=0.25 Score=58.12 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=21.2
Q ss_pred cEEEEEecCCCChhHHHHHHhCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
-.++|+|++|+|||||++.|+|-.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 567899999999999999998743
No 426
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=86.29 E-value=0.32 Score=48.01 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.4
Q ss_pred cEEEEEecCCCChhHHHHHHhC
Q 036930 471 LNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG 492 (1109)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998864
No 427
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.19 E-value=0.36 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=20.2
Q ss_pred cEEEEEecCCCChhHHHHHHhCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
++|+|+|+||+||+|....|+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988753
No 428
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=86.12 E-value=0.37 Score=57.17 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=24.9
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=.++|+|++|+|||||++.|+|...
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34566789999999999999999999754
No 429
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=86.07 E-value=0.36 Score=54.47 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=21.7
Q ss_pred HHHHHHhhhcccccCCCcEEEEEecCCCChhHHHHHH
Q 036930 454 RVAEQHEIEDKDDMDFSLNILVLGKTGVGKSATINSI 490 (1109)
Q Consensus 454 ~~a~qlla~~~e~L~~gLrIaLVGkTGVGKSSLINaL 490 (1109)
..|.+.+.......+...||+|+|.+|+||||++..|
T Consensus 17 ~~Id~~l~~~~~~~~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 17 KMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp --------------CCCEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHHhHHHhcCccEEEEECCCCCcHHHHHHHH
Confidence 3444555544455677899999999999999999887
No 430
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.05 E-value=0.66 Score=45.55 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHHHhC
Q 036930 472 NILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG 492 (1109)
.|+|.|++|+|||+++..|+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999875
No 431
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.90 E-value=0.41 Score=50.14 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.2
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
...+..|+|.|++|+||||+++.|...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999764
No 432
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=85.88 E-value=0.73 Score=47.21 Aligned_cols=109 Identities=20% Similarity=0.090 Sum_probs=55.8
Q ss_pred EEEEE-ecCCCChhHHHHHHh------CCCcceecCCCCc-eeE----------EEEE---EEEECCEEEEEEeCCCC-C
Q 036930 472 NILVL-GKTGVGKSATINSIF------GEEKSTINAFEPA-TSS----------VKVI---AGLVHGVKIRIFDTPGL-R 529 (1109)
Q Consensus 472 rIaLV-GkTGVGKSSLINaLL------G~~va~Vs~i~pg-TTr----------v~e~---~~~i~G~~VtLIDTPGL-~ 529 (1109)
.|+++ ++.|+||||+.-.|+ | ++..+..-..+ .+. +... ........++|||||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 35554 779999999986664 4 44333221011 110 0000 00013467899999986 4
Q ss_pred CCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCCCCCcHHHHHHHHhhhCCCCCCeEEEEEeccCC
Q 036930 530 SPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTRDHNDLPLLKSLTSSLGSSVWQNAILCLTHAAS 600 (1109)
Q Consensus 530 ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~d~eD~~lLk~I~e~FG~~v~k~vIVVLTKaD~ 600 (1109)
... ... .+. .+|.+++++..+...... -..+++.+.... ..++.+|+|+++.
T Consensus 81 ~~~--------~~~----~l~--~aD~viiv~~~~~~~~~~-~~~~~~~l~~~~----~~~~~vv~N~~~~ 132 (209)
T 3cwq_A 81 DED--------LEA----LAD--GCDLLVIPSTPDALALDA-LMLTIETLQKLG----NNRFRILLTIIPP 132 (209)
T ss_dssp SSH--------HHH----HHH--TSSEEEEEECSSHHHHHH-HHHHHHHHHHTC----SSSEEEEECSBCC
T ss_pred cHH--------HHH----HHH--HCCEEEEEecCCchhHHH-HHHHHHHHHhcc----CCCEEEEEEecCC
Confidence 321 111 122 279999986655322210 123344444321 2457789999975
No 433
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.78 E-value=0.37 Score=46.75 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHHHhC
Q 036930 472 NILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG 492 (1109)
.|+|+|.+|+||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=85.76 E-value=0.35 Score=55.03 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=23.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..+-.|+|+|++|+|||||++.|++
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 45566899999999999999999996
No 435
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.37 E-value=0.47 Score=49.24 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=22.7
Q ss_pred cccCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 465 DDMDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 465 e~L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
++...+..|+|+|++|+||||+.+.|.+
T Consensus 11 ~~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 11 DDKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp ---CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456778999999999999999999875
No 436
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=85.35 E-value=0.4 Score=62.54 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=23.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.+-.++|+|++|+|||||++.|+|...
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 445799999999999999999998653
No 437
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=85.30 E-value=0.75 Score=52.86 Aligned_cols=85 Identities=18% Similarity=0.115 Sum_probs=50.6
Q ss_pred eeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHHHHHHHHHhcCCCcEEEEEecCCCCCC-------CCCcHHHHH
Q 036930 505 TSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTLASIRKSIKKFPPDVVLYVDRLDTHTR-------DHNDLPLLK 577 (1109)
Q Consensus 505 TTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl~~Ikk~Lk~~gpDVVLLVvrlds~t~-------d~eD~~lLk 577 (1109)
|+-+......+++..+.||||+|-..... . ...+.. +++++|||++++.+.. ...-..+..
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~------~----w~~yf~--~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~ 271 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERR------K----WIQCFN--DVTAIIFVVASSSYNMVIREDNQTNRLQEALN 271 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGG------G----GGGGTT--TCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH
T ss_pred eeeeEEEEeecCCccceecccchhhhhhh------h----hHhhcc--CCCEEEEEEECcccccccccccccchHHHHHH
Confidence 33344556677899999999999744210 0 112222 5899999988876211 000123344
Q ss_pred HHHhhhCC--CCCCeEEEEEeccCCC
Q 036930 578 SLTSSLGS--SVWQNAILCLTHAASE 601 (1109)
Q Consensus 578 ~I~e~FG~--~v~k~vIVVLTKaD~l 601 (1109)
++..+... ....++|||+||+|+.
T Consensus 272 ~~~~i~~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 272 LFKSIWNNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp HHHHHHTCTTCSSCCEEEEEECHHHH
T ss_pred HHHHHHhcccCCCCeEEEEEEChhhh
Confidence 44444332 1246899999999974
No 438
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=85.27 E-value=0.47 Score=57.09 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.5
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
..+=.++|+|+.|+|||||++.|+|...
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4566789999999999999999999754
No 439
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=85.26 E-value=0.51 Score=45.43 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+..|+|.|+||+|||++..+|...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999753
No 440
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=85.07 E-value=0.34 Score=51.99 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+-+|+|+|++|+||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 441
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=84.72 E-value=2.3 Score=52.94 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.7
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+.-|+|.|+||+|||+|.++|+++
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 455678999999999999999999975
No 442
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.54 E-value=0.49 Score=50.46 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.++.|+|.|++|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
No 443
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=84.29 E-value=0.51 Score=45.93 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.1
Q ss_pred EEEEEecCCCChhHHHHHHhC
Q 036930 472 NILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG 492 (1109)
.|+|.|.+|+||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999864
No 444
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=84.27 E-value=0.43 Score=62.07 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.3
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.+-+++|+|++|+|||||++.|+|...
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445789999999999999999998643
No 445
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=84.17 E-value=0.49 Score=46.44 Aligned_cols=19 Identities=37% Similarity=0.793 Sum_probs=17.0
Q ss_pred EEEEecCCCChhHHHHHHh
Q 036930 473 ILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLL 491 (1109)
.+|+|++|+||||++.+|.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4688999999999999974
No 446
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=84.15 E-value=0.76 Score=49.73 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
...|+|.|++|+|||++...|+..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346899999999999999999653
No 447
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.02 E-value=0.59 Score=50.56 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.4
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+.+.-|+|.|+||+|||++..+|+..
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445667888899999999999999753
No 448
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.96 E-value=0.51 Score=45.42 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
...|+|.|+||+|||++..+|...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 457999999999999999998764
No 449
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=83.84 E-value=0.71 Score=48.73 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=24.5
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceec
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTIN 499 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs 499 (1109)
.+..|+|+|+||+|||||...|+.+-...++
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~~iIs 63 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGHRLIA 63 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTCEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCCeEEe
Confidence 3456899999999999999999876543333
No 450
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.81 E-value=0.33 Score=57.91 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=24.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+..|+|+|++|+|||||++.|++.
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHh
Confidence 556788999999999999999999875
No 451
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=83.76 E-value=0.46 Score=50.58 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=22.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..+-.++|+|++|+|||||+..|++
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44566789999999999999999886
No 452
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=83.74 E-value=0.51 Score=46.75 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.5
Q ss_pred cEEEEEecCCCChhHHHHHHhC
Q 036930 471 LNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG 492 (1109)
-.++|.|++|+||||++..++.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999874
No 453
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.70 E-value=0.61 Score=49.59 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.4
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
..+..|+|.|+||+|||++..+|+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999987765
No 454
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.53 E-value=0.92 Score=49.01 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+-.|+|.|++|+|||||++.+++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
No 455
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.42 E-value=0.62 Score=50.33 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..+-.|+|.|+||+|||+++++|++.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 345667999999999999999999864
No 456
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=83.26 E-value=1.6 Score=48.40 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+..|+|.|++|+|||+++.+|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999753
No 457
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=83.09 E-value=1.6 Score=48.80 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
....|+|.|++|+|||+++.+|+.+
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999754
No 458
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.02 E-value=1.1 Score=48.83 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+-.|+|.|+||+|||+++.+|+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 459
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=83.02 E-value=1.2 Score=48.44 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.1
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+..|+|.|+||+|||++..+|+..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567999999999999999999753
No 460
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.90 E-value=0.78 Score=51.69 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=35.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcc-eecC--C-----CCceeE-EEEEEEEECCEEEEEEeCCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKS-TINA--F-----EPATSS-VKVIAGLVHGVKIRIFDTPGL 528 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va-~Vs~--i-----~pgTTr-v~e~~~~i~G~~VtLIDTPGL 528 (1109)
..|+|+|+||+|||||...|+.+-.. .++. . -..+|. +. ..+..|.+..+||...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~--~eE~~gvphhlidi~~~ 105 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKIS--VPDRGGVPHHLLGEVDP 105 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCC--SGGGTTCCEESSSCBCG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCC--HHHHcCCCEeeccccCc
Confidence 46899999999999999999976542 2221 0 022332 11 11245677778887766
No 461
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=82.87 E-value=0.66 Score=50.00 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHh
Q 036930 469 FSLNILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLL 491 (1109)
.+..|+|.|.+|+||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999997
No 462
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.85 E-value=0.64 Score=48.80 Aligned_cols=24 Identities=33% Similarity=0.263 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
..+.|+|.|.+|+||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999865
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=82.81 E-value=0.61 Score=49.72 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.0
Q ss_pred cEEEEEecCCCChhHHHHHHhC
Q 036930 471 LNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG 492 (1109)
..|+|+|.+|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
No 464
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=82.34 E-value=0.11 Score=55.01 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.3
Q ss_pred EEEEecCCCChhHHHHHHhCCC
Q 036930 473 ILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~~ 494 (1109)
++|+|++|+|||||+++|++..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4688999999999999999853
No 465
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=82.20 E-value=0.68 Score=47.12 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=20.0
Q ss_pred cEEEEEecCCCChhHHHHHHhCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..|+|+|++|+|||||++.|+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 35789999999999999999753
No 466
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.04 E-value=0.77 Score=49.82 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=19.0
Q ss_pred EEEEecCCCChhHHHHHHhC
Q 036930 473 ILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG 492 (1109)
++|.|++|+||||+++.|++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999877
No 467
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=81.90 E-value=1 Score=55.97 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
-.++|+|+||+|||+++..|+..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 468
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=81.87 E-value=1.3 Score=48.56 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+-.|+|.|+||+|||+|+.+|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 469
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=81.78 E-value=0.75 Score=46.87 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=20.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHh
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLL 491 (1109)
+..+-.++|+|++|+|||||+..|+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 4455578899999999999977665
No 470
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=81.66 E-value=0.75 Score=55.43 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=22.2
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCc
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
=.++|+|+.|+|||||++.|+|-..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4578999999999999999999754
No 471
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=81.53 E-value=0.48 Score=57.19 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=21.1
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHh
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLL 491 (1109)
+..+-.++|+|++|+|||||+|.|+
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3456678999999999999999765
No 472
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=81.50 E-value=0.48 Score=60.09 Aligned_cols=29 Identities=41% Similarity=0.555 Sum_probs=25.0
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
+..+=+++|+|+.|+|||||++.|+|...
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44566899999999999999999999653
No 473
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=81.39 E-value=1.3 Score=48.99 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+..|+|.|+||+|||++..+|...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999753
No 474
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=81.37 E-value=0.88 Score=47.90 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=21.9
Q ss_pred ccCCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 466 DMDFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 466 ~L~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+..+-.|+|+|+||+||+|....|+..
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4444545778999999999999888754
No 475
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.07 E-value=1.6 Score=47.52 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+-.|+|.|++|+|||++++.++..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999853
No 476
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=81.03 E-value=0.87 Score=48.68 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCChhHHHHHHhC
Q 036930 470 SLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
...|+|.|++|+|||+++..|..
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999975
No 477
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.93 E-value=0.77 Score=48.46 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCChhHHHHHHhC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
.+..|+|.|+||+|||+++.+|+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 478
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=80.90 E-value=0.76 Score=59.80 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCc
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEK 495 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~v 495 (1109)
.+=+|+|+|++|+|||||++.|+|-..
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 455789999999999999999998653
No 479
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=80.88 E-value=0.81 Score=45.54 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.3
Q ss_pred EEEEEecCCCChhHHHHHHhC
Q 036930 472 NILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLLG 492 (1109)
.|+|.|++|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 480
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=80.32 E-value=0.64 Score=59.00 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=22.6
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG 492 (1109)
+..+-.++|+|++|+|||||++.|+|
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34566789999999999999999995
No 481
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=79.54 E-value=0.87 Score=46.73 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=17.2
Q ss_pred EEEEEecCCCChhHHHHHHh
Q 036930 472 NILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 472 rIaLVGkTGVGKSSLINaLL 491 (1109)
-.+|+|++|+||||++.+|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 34688999999999999884
No 482
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=79.32 E-value=1.6 Score=50.08 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+-.|+|.|+||+|||++..+|+..
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHH
Confidence 3457999999999999999998753
No 483
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=79.23 E-value=0.96 Score=46.40 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
...|+|+|.+|+||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999998743
No 484
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=79.15 E-value=0.88 Score=49.21 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+-.++|.|++|+|||+|+.+|++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456899999999999999999863
No 485
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=79.10 E-value=0.92 Score=50.72 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.4
Q ss_pred cEEEEEecCCCChhHHHHHHhCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..|+|+|+||+||||+...|+.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 486
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=78.87 E-value=0.92 Score=50.70 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
....++|+|+||+|||++++.|+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999864
No 487
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=78.83 E-value=0.97 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=19.7
Q ss_pred CCCcEEEEEecCCCChhHHHHHHh
Q 036930 468 DFSLNILVLGKTGVGKSATINSIF 491 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLL 491 (1109)
..+ -.+|+|++|+||||++.+|.
T Consensus 23 ~~g-~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp CSS-EEEEECCTTTCSTHHHHHHH
T ss_pred CCC-cEEEECCCCCcHHHHHHHHH
Confidence 344 56799999999999999997
No 488
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=78.83 E-value=0.89 Score=49.24 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+-.|+|.|++|+||||+++.++..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999853
No 489
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=78.77 E-value=1.1 Score=49.92 Aligned_cols=32 Identities=22% Similarity=0.519 Sum_probs=25.6
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCCCcceecC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGEEKSTINA 500 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~~va~Vs~ 500 (1109)
.+.-|+++|++|+||||+.+.|+.+...-+++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~d 174 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRGHRLVAD 174 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTCEEEES
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcCCceecC
Confidence 45679999999999999999999765444443
No 490
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=78.74 E-value=1.2 Score=46.65 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..|+|.|+||+|||++..+|...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh
Confidence 467999999999999999999753
No 491
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=78.69 E-value=1.1 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCChhHHHHHHhCC
Q 036930 470 SLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 470 gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
+..|+|.|..|+||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999754
No 492
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=78.67 E-value=0.77 Score=48.38 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=22.2
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..+..|+|.|.+|+||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45678999999999999999998754
No 493
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=78.47 E-value=0.93 Score=50.80 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=47.1
Q ss_pred cEEEEEecCCCChhHHHHHHhCCCcce-ecC-----C--CCceeEEEEEEEEECCEEEEEEeCCCCCCCCcchhhhHHHH
Q 036930 471 LNILVLGKTGVGKSATINSIFGEEKST-INA-----F--EPATSSVKVIAGLVHGVKIRIFDTPGLRSPAIGRTVNKKTL 542 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~va~-Vs~-----i--~pgTTrv~e~~~~i~G~~VtLIDTPGL~ds~~~~~~~eeIl 542 (1109)
.-|+|+||||+|||||...|+...... ++. + -+.||.. ....+..|++-.+||.-.+.+.-....-.+...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTak-p~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~ 82 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAK-ITAEEMDGVPHHLIDIKDPSESFSVADFQDLAT 82 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTC-CCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCC-CCHHHHcCCCEEEeccCChhhhccHHHHHHHHH
Confidence 357899999999999999998654321 111 1 1223320 111234677778888776655432112223333
Q ss_pred HHHHHHHhcCCCcEEEEE
Q 036930 543 ASIRKSIKKFPPDVVLYV 560 (1109)
Q Consensus 543 ~~Ikk~Lk~~gpDVVLLV 560 (1109)
..+...... -.+.|+|
T Consensus 83 ~~i~~i~~~--gk~pIlV 98 (322)
T 3exa_A 83 PLITEIHER--GRLPFLV 98 (322)
T ss_dssp HHHHHHHHT--TCEEEEE
T ss_pred HHHHHHHhC--CCcEEEE
Confidence 444443332 2455666
No 494
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=78.36 E-value=0.88 Score=50.80 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=23.3
Q ss_pred cCCCcEEEEEecCCCChhHHHHHHhCCC
Q 036930 467 MDFSLNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 467 L~~gLrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
+..+-.++|+|++|+|||||++.|++..
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455578899999999999999999753
No 495
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=78.09 E-value=1.4 Score=48.93 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+..|.|.|+||+|||++++.++..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999853
No 496
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=77.99 E-value=1.1 Score=51.80 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=22.0
Q ss_pred CCCcEEEEEecCCCChhHHHHHHhCC
Q 036930 468 DFSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 468 ~~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
..++.|+|+|.+|+||||+.+.|...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999753
No 497
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=77.86 E-value=0.89 Score=48.23 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=18.9
Q ss_pred cEEEEEecCCCChhHHHHHHhC
Q 036930 471 LNILVLGKTGVGKSATINSIFG 492 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG 492 (1109)
-.|++.|+||+||||++.+|+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888764
No 498
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.77 E-value=0.86 Score=49.80 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=19.3
Q ss_pred EEEEecCCCChhHHHHHHhCC
Q 036930 473 ILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 473 IaLVGkTGVGKSSLINaLLG~ 493 (1109)
++|.|++|+||||++..|++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999864
No 499
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=77.71 E-value=1 Score=50.39 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=20.7
Q ss_pred cEEEEEecCCCChhHHHHHHhCCC
Q 036930 471 LNILVLGKTGVGKSATINSIFGEE 494 (1109)
Q Consensus 471 LrIaLVGkTGVGKSSLINaLLG~~ 494 (1109)
..|+|+|+||+|||||...|+...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 458899999999999999998543
No 500
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=77.71 E-value=0.95 Score=53.50 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChhHHHHHHhCC
Q 036930 469 FSLNILVLGKTGVGKSATINSIFGE 493 (1109)
Q Consensus 469 ~gLrIaLVGkTGVGKSSLINaLLG~ 493 (1109)
.+-.++|+|+||+|||||+++|.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999864
Done!