BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036932
(790 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 216/711 (30%), Positives = 309/711 (43%), Gaps = 99/711 (13%)
Query: 50 TLQGLTKLKNLEALDLSYNNISG---SSESQGVCELKNLSEFILRGINIKGHLPDCLKNL 106
++ G +L +LDLS N++SG + S G C ++ G + LK L
Sbjct: 92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-L 150
Query: 107 SHLKVLDISYNQLSGTLPSAITTLTS-----LEYLALLDNNFEGTFLLNSLANHSKLEVL 161
+ L+VLD+S N +SG + + + S L++LA+ N G ++ N LE
Sbjct: 151 NSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN---LE-- 203
Query: 162 LLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFXXXXXXXXXXXXSGNNLVGDFP 221
L V + NF G+P F SGN L GDF
Sbjct: 204 -------FLDVSSNNF-------STGIP---------FLGDCSALQHLDISGNKLSGDF- 239
Query: 222 TWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLL 281
+ + T+L+ L +++N F G +P L +L ++ N TG++P+ + L
Sbjct: 240 SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 282 YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG 341
+D+S N F G +P G L L L NNFSGELP L L +LDLS N F G
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 342 QIFPKYMNLT-QLEFLYLENNKFSGKIXXXXXXXXXXXXXXXXXXXXXGHIPHWIGNFSS 400
++ NL+ L L L +N FSG I +P+ N +
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPI-----------------------LPNLCQNPKN 394
Query: 401 DLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSL 459
L+ L + G IP L N L L +S N LSG + SS +LS L L L +N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 460 SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLR 519
G IP L L TL L N +G IP +S L ++ L N L G+IP + +L
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514
Query: 520 RLGVLDLSHNRISGSIPSCL--TIMLLWVAGNVYLHE---PYLQF-----FSAIFVGSIG 569
L +L LS+N SG+IP+ L L+W+ N L P F +A F+
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574
Query: 570 TYY--NSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIK--------------- 612
Y N +G G F Q ++ E + NR N NI
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEF-QGIRSEQL--NRLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 613 -YMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNR 670
M+ LD+S N L+G IP EIG + + LNL +N +SGSIP +L+ + LDLS N+
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 671 LSGQVPPRLTEXXXXXXXXXXXXXXXGLIPDKGQFATFDESSYRGNLHLCG 721
L G++P ++ G IP+ GQF TF + + N LCG
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 167/388 (43%), Gaps = 64/388 (16%)
Query: 35 LTNLKILDLSGCGITTL--QGLTKLK-NLEALDLSYNNISGSSESQGVCELKN-LSEFIL 90
+ LK+LDLS + + LT L +L LDLS NN SG KN L E L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 91 RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEG----- 145
+ G +P L N S L L +S+N LSGT+PS++ +L+ L L L N EG
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 146 --------TFLLN----------SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQ-LKVL 186
T +L+ L+N + L + LS+ N L+ + ++ + L +L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN--NRLTGEIPKWIGRLENLAIL 519
Query: 187 GLPNYNLKV-IPSFXXXXXXXXXXXXSGNNLVGDFPTWVLRNNTKLEALFLTNNSF---- 241
L N + IP+ + N G P + + + K+ A F+ +
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579
Query: 242 ----------TGNL-QLPKTKHDFLHHLDVSNN-NLTGKL------P--EDMGIILQKLL 281
GNL + + + L+ L N N+T ++ P ++ G ++
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG----SMM 635
Query: 282 YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL--LTGCISLGLLDLSGNNF 339
++DMS N GY+P IG M L L L N+ SG +P + L G L +LDLS N
Sbjct: 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG---LNILDLSSNKL 692
Query: 340 YGQIFPKYMNLTQLEFLYLENNKFSGKI 367
G+I LT L + L NN SG I
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPI 720
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 216/711 (30%), Positives = 309/711 (43%), Gaps = 99/711 (13%)
Query: 50 TLQGLTKLKNLEALDLSYNNISG---SSESQGVCELKNLSEFILRGINIKGHLPDCLKNL 106
++ G +L +LDLS N++SG + S G C ++ G + LK L
Sbjct: 89 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-L 147
Query: 107 SHLKVLDISYNQLSGTLPSAITTLTS-----LEYLALLDNNFEGTFLLNSLANHSKLEVL 161
+ L+VLD+S N +SG + + + S L++LA+ N G ++ N LE
Sbjct: 148 NSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN---LE-- 200
Query: 162 LLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFXXXXXXXXXXXXSGNNLVGDFP 221
L V + NF G+P F SGN L GDF
Sbjct: 201 -------FLDVSSNNF-------STGIP---------FLGDCSALQHLDISGNKLSGDF- 236
Query: 222 TWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLL 281
+ + T+L+ L +++N F G +P L +L ++ N TG++P+ + L
Sbjct: 237 SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 282 YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG 341
+D+S N F G +P G L L L NNFSGELP L L +LDLS N F G
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 354
Query: 342 QIFPKYMNLT-QLEFLYLENNKFSGKIXXXXXXXXXXXXXXXXXXXXXGHIPHWIGNFSS 400
++ NL+ L L L +N FSG I +P+ N +
Sbjct: 355 ELPESLTNLSASLLTLDLSSNNFSGPI-----------------------LPNLCQNPKN 391
Query: 401 DLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSL 459
L+ L + G IP L N L L +S N LSG + SS +LS L L L +N L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 460 SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLR 519
G IP L L TL L N +G IP +S L ++ L N L G+IP + +L
Sbjct: 452 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 511
Query: 520 RLGVLDLSHNRISGSIPSCL--TIMLLWVAGNVYLHE---PYLQF-----FSAIFVGSIG 569
L +L LS+N SG+IP+ L L+W+ N L P F +A F+
Sbjct: 512 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 571
Query: 570 TYY--NSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIK--------------- 612
Y N +G G F Q ++ E + NR N NI
Sbjct: 572 YVYIKNDGMKKECHGAGNLLEF-QGIRSEQL--NRLSTRNPCNITSRVYGGHTSPTFDNN 628
Query: 613 -YMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNR 670
M+ LD+S N L+G IP EIG + + LNL +N +SGSIP +L+ + LDLS N+
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 671 LSGQVPPRLTEXXXXXXXXXXXXXXXGLIPDKGQFATFDESSYRGNLHLCG 721
L G++P ++ G IP+ GQF TF + + N LCG
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 112/388 (28%), Positives = 167/388 (43%), Gaps = 64/388 (16%)
Query: 35 LTNLKILDLSGCGITTL--QGLTKL-KNLEALDLSYNNISGSSESQGVCELKN-LSEFIL 90
+ LK+LDLS + + LT L +L LDLS NN SG KN L E L
Sbjct: 339 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 398
Query: 91 RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEG----- 145
+ G +P L N S L L +S+N LSGT+PS++ +L+ L L L N EG
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 146 --------TFLLN----------SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQ-LKVL 186
T +L+ L+N + L + LS+ N L+ + ++ + L +L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN--NRLTGEIPKWIGRLENLAIL 516
Query: 187 GLPNYNLKV-IPSFXXXXXXXXXXXXSGNNLVGDFPTWVLRNNTKLEALFLTNNSF---- 241
L N + IP+ + N G P + + + K+ A F+ +
Sbjct: 517 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 576
Query: 242 ----------TGNL-QLPKTKHDFLHHLDVSNN-NLTGKL------P--EDMGIILQKLL 281
GNL + + + L+ L N N+T ++ P ++ G ++
Sbjct: 577 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG----SMM 632
Query: 282 YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL--LTGCISLGLLDLSGNNF 339
++DMS N GY+P IG M L L L N+ SG +P + L G L +LDLS N
Sbjct: 633 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG---LNILDLSSNKL 689
Query: 340 YGQIFPKYMNLTQLEFLYLENNKFSGKI 367
G+I LT L + L NN SG I
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPI 717
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 109/245 (44%), Gaps = 35/245 (14%)
Query: 416 IPAQLLNHGSLNLLSVSE-NCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNL 473
IP+ L N LN L + N L GP+ + L+ L +LY+ ++SG IP L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 474 ITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRL-GVLDLSHNRIS 532
+TLD N SG +P IS L + GN + G IP+ +L + +S NR++
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 533 GSIPSC---LTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNS-TFHFGHYGNGVYSI 588
G IP L + + ++ N+ + + F S I NS F G G
Sbjct: 188 GKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG------ 241
Query: 589 FPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFL 647
++KN + GLDL N++ G +P + L+ + LN+S+N L
Sbjct: 242 ---------LSKN------------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 648 SGSIP 652
G IP
Sbjct: 281 CGEIP 285
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 104/237 (43%), Gaps = 11/237 (4%)
Query: 41 LDLSGCGITTLQGL-TKLKNLEALDLSY----NNISGSSESQGVCELKNLSEFILRGINI 95
LDLSG + + + L NL L+ Y NN+ G + +L L + N+
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNV 113
Query: 96 KGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANH 155
G +PD L + L LD SYN LSGTLP +I++L +L + N G + +S +
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSF 172
Query: 156 SKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPS-FXXXXXXXXXXXXSGN 214
SKL + SR N L+ K L + L L+ S + N
Sbjct: 173 SKLFTSMTISR-NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 215 NLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPE 271
+L D L N L L L NN G L T+ FLH L+VS NNL G++P+
Sbjct: 232 SLAFDLGKVGLSKN--LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 101/264 (38%), Gaps = 67/264 (25%)
Query: 481 NRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLT 540
N G IP I++ L +L + + G IP+ L Q++ L LD S+N +SG++P ++
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 541 IMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTK 600
+ P L +G ++ GN + P
Sbjct: 147 SL------------PNL----------VGITFD--------GNRISGAIP---------- 166
Query: 601 NRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIP---GSFSN 657
+ Y GS K + +S N+LTG IP +L + ++LS N L G GS N
Sbjct: 167 DSY----GSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 658 LKWIE--------------------SLDLSHNRLSGQVPPRLTEXXXXXXXXXXXXXXXG 697
+ I LDL +NR+ G +P LT+ G
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 698 LIPDKGQFATFDESSYRGNLHLCG 721
IP G FD S+Y N LCG
Sbjct: 283 EIPQGGNLQRFDVSAYANNKCLCG 306
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 98/232 (42%), Gaps = 36/232 (15%)
Query: 337 NNFYGQIFPKYMNLTQLEFLYLEN------------------------NKFSGKIXXXXX 372
NN G I P LTQL +LY+ + N SG +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 373 XXXXXXXXXXXXXXXXGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVS 432
G IP G+FS + +S+ L G IP N +L + +S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205
Query: 433 ENCLSGPMTSSF-NLSSLEHLYLQMNSLS---GPIPIALFRSSNLITLDLRDNRFSGVIP 488
N L G + F + + + ++L NSL+ G + + S NL LDLR+NR G +P
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL----SKNLNGLDLRNNRIYGTLP 261
Query: 489 HQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNR-ISGS-IPSC 538
+++ L L + N L G+IP Q L+R V ++N+ + GS +P+C
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 87/217 (40%), Gaps = 14/217 (6%)
Query: 151 SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK-VIPSFXXXXXXXXXX 209
SLAN L L + N++ QL L + + N+ IP F
Sbjct: 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130
Query: 210 XXSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF---LHHLDVSNNNLT 266
S N L G P + + L + N +G +P + F + +S N LT
Sbjct: 131 DFSYNALSGTLPPSI-SSLPNLVGITFDGNRISG--AIPDSYGSFSKLFTSMTISRNRLT 187
Query: 267 GKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGC 326
GK+P + L ++D+S N EG G K + L KN+ + +L L+
Sbjct: 188 GKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK- 244
Query: 327 ISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKF 363
+L LDL N YG + LTQL+FL+ N F
Sbjct: 245 -NLNGLDLRNNRIYGTL---PQGLTQLKFLHSLNVSF 277
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 21 ASNILFFIVVGFANLTNLKILDLSGCGI--TTLQGLTKLKNLEALDLSYNNISGSSESQG 78
A N L F + NL LDL I T QGLT+LK L +L++S+NN+ G G
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288
Query: 79 VCELKNLSEFILRGINIKGHLPDC 102
+ ++S + LP C
Sbjct: 289 NLQRFDVSAYANNKCLCGSPLPAC 312
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
+ ANLTNL L L IT + L L NL L+LS N IS S G+ L+ LS
Sbjct: 105 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS-- 162
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
G + P L NL+ L+ LDIS N++S S + LT+LE L +N
Sbjct: 163 --FGNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 216
Query: 149 LNSLANHSKLEV 160
L L N +L +
Sbjct: 217 LGILTNLDELSL 228
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 35 LTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN 94
LTNL L L+G + + L L NL LDL+ N IS + G+ + L+E L
Sbjct: 220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK---LTELKLGANQ 276
Query: 95 IKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLAN 154
I P L L+ L L+++ NQL P I+ L +L YL L NN ++SL
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTK 332
Query: 155 HSKL 158
+L
Sbjct: 333 LQRL 336
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 32 FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKN--LSEFI 89
A+LTNL LDL+ I+ L L+ L L L L N IS S G+ L N L+E
Sbjct: 239 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 298
Query: 90 LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
L I+ + NL +L L + +N +S P +++LT L+ L +N L
Sbjct: 299 LEDIS-------PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSL 349
Query: 150 NSLAN 154
+L N
Sbjct: 350 ANLTN 354
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
NL++LE L + N +S I + L + +NL +L +N+ S + P I +L L L G
Sbjct: 175 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGILTNL--DELSLNG 230
Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
N L+ L L L LDL++N+IS P
Sbjct: 231 NQLKD--IGTLASLTNLTDLDLANNQISNLAP 260
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
+ ANLTNL L L IT + L L NL L+LS N IS S G+ L+ LS
Sbjct: 104 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS-- 161
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
G + P L NL+ L+ LDIS N++S S + LT+LE L +N
Sbjct: 162 --FGNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 215
Query: 149 LNSLANHSKLEV 160
L L N +L +
Sbjct: 216 LGILTNLDELSL 227
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 35 LTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN 94
LTNL L L+G + + L L NL LDL+ N IS + G+ + L+E L
Sbjct: 219 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK---LTELKLGANQ 275
Query: 95 IKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLAN 154
I P L L+ L L+++ NQL P I+ L +L YL L NN ++SL
Sbjct: 276 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTK 331
Query: 155 HSKL 158
+L
Sbjct: 332 LQRL 335
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 32 FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKN--LSEFI 89
A+LTNL LDL+ I+ L L+ L L L L N IS S G+ L N L+E
Sbjct: 238 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 297
Query: 90 LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
L I+ + NL +L L + +N +S P +++LT L+ L +N L
Sbjct: 298 LEDIS-------PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSL 348
Query: 150 NSLAN 154
+L N
Sbjct: 349 ANLTN 353
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
NL++LE L + N +S I + L + +NL +L +N+ S + P I +L L L G
Sbjct: 174 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGILTNL--DELSLNG 229
Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
N L+ L L L LDL++N+IS P
Sbjct: 230 NQLKD--IGTLASLTNLTDLDLANNQISNLAP 259
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
+ ANLTNL L L IT + L L NL L+LS N IS S G+ L+ LS
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFS 159
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
+ ++K L NL+ L+ LDIS N++S S + LT+LE L +N
Sbjct: 160 SNQVTDLK-----PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Query: 149 LNSLANHSKLEV 160
L L N +L +
Sbjct: 213 LGILTNLDELSL 224
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 35 LTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN 94
LTNL L L+G + + L L NL LDL+ N IS + G+ + L+E L
Sbjct: 216 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK---LTELKLGANQ 272
Query: 95 IKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLAN 154
I P L L+ L L+++ NQL P I+ L +L YL L NN ++SL
Sbjct: 273 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTK 328
Query: 155 HSKL 158
+L
Sbjct: 329 LQRL 332
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 32 FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILR 91
A+LTNL LDL+ I+ L L+ L L L L N IS S G+ L NL
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE----- 289
Query: 92 GINIKGHLPDC--LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
+N + L D + NL +L L + +N +S P +++LT L+ L +N L
Sbjct: 290 -LN-ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSL 345
Query: 150 NSLAN 154
+L N
Sbjct: 346 ANLTN 350
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 425 SLNLLSVSENCLSG--PMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNR 482
SL LS S N ++ P+ NL++LE L + N +S I + L + +NL +L +N+
Sbjct: 152 SLQQLSFSSNQVTDLKPLA---NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQ 206
Query: 483 FSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
S + P I +L L L GN L+ L L L LDL++N+IS P
Sbjct: 207 ISDITPLGILTNL--DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
+ ANLTNL L L IT + L L NL L+LS N IS S G+ L+ LS
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFS 159
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
+ ++K L NL+ L+ LDIS N++S S + LT+LE L +N
Sbjct: 160 SNQVTDLK-----PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Query: 149 LNSLANHSKLEV 160
L L N +L +
Sbjct: 213 LGILTNLDELSL 224
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 35 LTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN 94
LTNL L L+G + + L L NL LDL+ N IS + G+ + L+E L
Sbjct: 216 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK---LTELKLGANQ 272
Query: 95 IKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLAN 154
I P L L+ L L+++ NQL P I+ L +L YL L NN ++SL
Sbjct: 273 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTK 328
Query: 155 HSKL 158
+L
Sbjct: 329 LQRL 332
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 32 FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILR 91
A+LTNL LDL+ I+ L L+ L L L L N IS S G+ L NL
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE----- 289
Query: 92 GINIKGHLPDC--LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
+N + L D + NL +L L + +N +S P +++LT L+ L +N L
Sbjct: 290 -LN-ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDVSSL 345
Query: 150 NSLAN 154
+L N
Sbjct: 346 ANLTN 350
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 425 SLNLLSVSENCLSG--PMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNR 482
SL LS S N ++ P+ NL++LE L + N +S I + L + +NL +L +N+
Sbjct: 152 SLQQLSFSSNQVTDLKPLA---NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQ 206
Query: 483 FSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
S + P I +L L L GN L+ L L L LDL++N+IS P
Sbjct: 207 ISDITPLGILTNL--DELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 256
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
+ ANLTNL L L IT + L L NL L+LS N IS S G+ L+ L
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL--- 156
Query: 89 ILRGINIKGHLPDC--LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGT 146
N + D L NL+ L+ LDIS N++S S + LT+LE L +N
Sbjct: 157 -----NFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 209
Query: 147 FLLNSLANHSKLEV 160
L L N +L +
Sbjct: 210 TPLGILTNLDELSL 223
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 35 LTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN 94
LTNL L L+G + + L L NL LDL+ N IS + G+ + L+E L
Sbjct: 215 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK---LTELKLGANQ 271
Query: 95 IKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLAN 154
I P L L+ L L+++ NQL P I+ L +L YL L NN ++SL
Sbjct: 272 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTK 327
Query: 155 HSKL 158
+L
Sbjct: 328 LQRL 331
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 32 FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILR 91
A+LTNL LDL+ I+ L L+ L L L L N IS S G+ L NL
Sbjct: 234 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE----- 288
Query: 92 GINIKGHLPDC--LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
+N + L D + NL +L L + +N +S P +++LT L+ L +N L
Sbjct: 289 -LN-ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSL 344
Query: 150 NSLAN 154
+L N
Sbjct: 345 ANLTN 349
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
NL++LE L + N +S I + L + +NL +L +N+ S + P I +L L L G
Sbjct: 170 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGILTNL--DELSLNG 225
Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
N L+ L L L LDL++N+IS P
Sbjct: 226 NQLKD--IGTLASLTNLTDLDLANNQISNLAP 255
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
+ ANLTNL L L IT + L L NL L+LS N IS S G+ L+ L
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL--- 156
Query: 89 ILRGINIKGHLPDC--LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGT 146
N + D L NL+ L+ LDIS N++S S + LT+LE L +N
Sbjct: 157 -----NFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI 209
Query: 147 FLLNSLANHSKLEV 160
L L N +L +
Sbjct: 210 TPLGILTNLDELSL 223
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 35 LTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN 94
LTNL L L+G + + L L NL LDL+ N IS + G+ + L+E L
Sbjct: 215 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK---LTELKLGANQ 271
Query: 95 IKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLAN 154
I P L L+ L L+++ NQL P I+ L +L YL L NN ++SL
Sbjct: 272 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTK 327
Query: 155 HSKL 158
+L
Sbjct: 328 LQRL 331
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 32 FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILR 91
A+LTNL LDL+ I+ L L+ L L L L N IS S G+ L NL
Sbjct: 234 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE----- 288
Query: 92 GINIKGHLPDC--LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
+N + L D + NL +L L + +N +S P +++LT L+ L +N L
Sbjct: 289 -LN-ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDVSSL 344
Query: 150 NSLAN 154
+L N
Sbjct: 345 ANLTN 349
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
NL++LE L + N +S I + L + +NL +L +N+ S + P I +L L L G
Sbjct: 170 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGILTNL--DELSLNG 225
Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
N L+ L L L LDL++N+IS P
Sbjct: 226 NQLKD--IGTLASLTNLTDLDLANNQISNLAP 255
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 36 TNLKILDLSGCGITTLQG-LTKLKNLEALDLSYNNISGSSESQGVCELKNL--------- 85
T+LK LDLS G+ T+ L+ LE LD ++N+ SE L+NL
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 86 SEFILRGI----------NIKGH------LPDCLKNLSHLKVLDISYNQLSGTLPSAITT 129
+ GI + G+ LPD L +L LD+S QL P+A +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 130 LTSLEYLALLDNNF 143
L+SL+ L + NNF
Sbjct: 493 LSSLQVLNMSHNNF 506
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 31 GFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
F + L++LDLS C I T++ L +L L L+ N I + L +L +
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKL 105
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQL-SGTLPSAITTLTSLEYLALLDNNFEGTF 147
+ N+ + +L LK L++++N + S LP + LT+LE+L L N + +
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF 314
L HLD ++NL + + L+ L+Y+D+S + +L L++ N+F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 315 SGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMN-LTQLEFLYLENNKF 363
+ T +L LDLS Q+ P N L+ L+ L + +N F
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 440 MTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLTL 497
M+S+F L LEHL Q ++L ++F S NLI LD+ + +L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 498 RFLLLRGN-YLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
L + GN + E +P+ +LR L LDLS ++ P+
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 632 IGDLQ-IRGLNLSYNFL-SGSIPGSFSNLKWIESLDLSHNRLSG 673
IG L+ ++ LN+++N + S +P FSNL +E LDLS N++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
+ ANLTNL L L IT + L L NL L+LS N IS S G+ L+ L+
Sbjct: 100 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFS 159
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
+ ++K L NL+ L+ LDIS N++S S + LT+LE L +N
Sbjct: 160 SNQVTDLK-----PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 212
Query: 149 LNSLANHSKLEV 160
L L N +L +
Sbjct: 213 LGILTNLDELSL 224
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 35 LTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN 94
LTNL L L+G + + L L NL LDL+ N IS + G+ + L+E L
Sbjct: 216 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK---LTELKLGANQ 272
Query: 95 IKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLAN 154
I P L L+ L L+++ NQL P I+ L +L YL L NN ++SL
Sbjct: 273 ISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTK 328
Query: 155 HSKL 158
+L
Sbjct: 329 LQRL 332
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 32 FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILR 91
A+LTNL LDL+ I+ L L+ L L L L N IS S G+ L NL
Sbjct: 235 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE----- 289
Query: 92 GINIKGHLPDC--LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL 149
+N + L D + NL +L L + +N +S P +++LT L+ L +N L
Sbjct: 290 -LN-ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSL 345
Query: 150 NSLAN 154
+L N
Sbjct: 346 ANLTN 350
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
NL++LE L + N +S I + L + +NL +L +N+ S + P I +L L L G
Sbjct: 171 NLTTLERLDISSNKVSD-ISV-LAKLTNLESLIATNNQISDITPLGILTNL--DELSLNG 226
Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536
N L+ L L L LDL++N+IS P
Sbjct: 227 NQLKD--IGTLASLTNLTDLDLANNQISNLAP 256
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 26/134 (19%)
Query: 36 TNLKILDLSGCGITTLQG-LTKLKNLEALDLSYNNISGSSESQGVCELKNL--------- 85
T+LK LDLS G+ T+ L+ LE LD ++N+ SE L+NL
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 86 SEFILRGI----------NIKGH------LPDCLKNLSHLKVLDISYNQLSGTLPSAITT 129
+ GI + G+ LPD L +L LD+S QL P+A +
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Query: 130 LTSLEYLALLDNNF 143
L+SL+ L + NNF
Sbjct: 198 LSSLQVLNMSHNNF 211
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 28/128 (21%)
Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYID------------------------MSDNRF 290
L HLD ++NL + + L+ L+Y+D M+ N F
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 291 -EGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG-QIFPKYM 348
E +LP E++ L FL L + +L SL +L++S NNF+ FP Y
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YK 220
Query: 349 NLTQLEFL 356
L L+ L
Sbjct: 221 CLNSLQVL 228
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 18/158 (11%)
Query: 391 IPHWIGNFSSDLKVLLMSK--MFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFN--- 445
+PH + + + L L +S + KG SL L +S N G +T S N
Sbjct: 43 LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLG 99
Query: 446 LSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNR----FSGVIPHQISESLTLRFL 500
L LEHL Q ++L ++F S NLI LD+ F+G+ S L L
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS----LEVL 155
Query: 501 LLRGN-YLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
+ GN + E +P+ +LR L LDLS ++ P+
Sbjct: 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 193
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 26/133 (19%)
Query: 37 NLKILDLSGCGITTLQG-LTKLKNLEALDLSYNNISGSSESQGVCELKNL---------S 86
+LK LDLS G+ T+ L+ LE LD ++N+ SE L+NL +
Sbjct: 398 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457
Query: 87 EFILRGI----------NIKGH------LPDCLKNLSHLKVLDISYNQLSGTLPSAITTL 130
GI + G+ LPD L +L LD+S QL P+A +L
Sbjct: 458 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 517
Query: 131 TSLEYLALLDNNF 143
+SL+ L + NNF
Sbjct: 518 SSLQVLNMSHNNF 530
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 31 GFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
F + L++LDLS C I T++ L +L L L+ N I S L +L +
Sbjct: 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 129
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQL-SGTLPSAITTLTSLEYLALLDNNFEGTF 147
+ N+ + +L LK L++++N + S LP + LT+LE+L L N + +
Sbjct: 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF 314
L HLD ++NL + + L+ L+Y+D+S + +L L++ N+F
Sbjct: 422 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 481
Query: 315 SGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMN-LTQLEFLYLENNKF 363
+ T +L LDLS Q+ P N L+ L+ L + +N F
Sbjct: 482 QENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 440 MTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLTL 497
M+S+F L LEHL Q ++L ++F S NLI LD+ + +L
Sbjct: 412 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471
Query: 498 RFLLLRGN-YLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
L + GN + E +P+ +LR L LDLS ++ P+
Sbjct: 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 512
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 632 IGDLQ-IRGLNLSYNFL-SGSIPGSFSNLKWIESLDLSHNRLSG 673
IG L+ ++ LN+++N + S +P FSNL +E LDLS N++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 60 LEALDLSYNNIS--GSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYN 117
+++LDLS+N I+ G + + NL IL+ I D +L L+ LD+S N
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACA---NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 84
Query: 118 QLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENF 177
LS S L+SL+YL L+ N ++ + + N + L+ L + + ++ +F
Sbjct: 85 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 178 -----LPTFQLKVLGLPNYNLKVIPSF 199
L ++K L L NY + + S
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSI 171
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
V A L ++K LDL+ IT + L L NL+ L L N I+ S G+ L+ LS
Sbjct: 100 VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS-- 157
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
+ + P L NLS L L N++S P A +L +L + L +N
Sbjct: 158 -IGNAQVSDLTP--LANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISD--- 209
Query: 149 LNSLANHSKLEVLLLSSRT 167
++ LAN S L ++ L+++T
Sbjct: 210 VSPLANTSNLFIVTLTNQT 228
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 34/156 (21%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNL--- 85
V A+L + L G G+TT++G+ L NL L+L N I+ + LKNL
Sbjct: 34 TVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT------DLAPLKNLTKI 87
Query: 86 SEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLP--------------------S 125
+E L G +K + L +K LD++ Q++ P S
Sbjct: 88 TELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS 145
Query: 126 AITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVL 161
+ LT+L+YL++ + L LAN SKL L
Sbjct: 146 PLAGLTNLQYLSIGNAQVSD---LTPLANLSKLTTL 178
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 60 LEALDLSYNNIS--GSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYN 117
+++LDLS+N I+ G + + NL IL+ I D +L L+ LD+S N
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACA---NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN 110
Query: 118 QLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENF 177
LS S L+SL+YL L+ N ++ + + N + L+ L + + ++ +F
Sbjct: 111 HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 170
Query: 178 -----LPTFQLKVLGLPNYNLKVIPSF 199
L ++K L L NY + + S
Sbjct: 171 AGLTSLNELEIKALSLRNYQSQSLKSI 197
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 54 LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLD 113
L+ LK + L LS NNI S G+ L+ LS G N+ + + L+ L
Sbjct: 45 LSTLKACKHLALSTNNIEKISSLSGMENLRILS----LGRNLIKKIENLDAVADTLEELW 100
Query: 114 ISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVK 173
ISYNQ++ S I L +L L + +N ++ LA KLE LLL+ K
Sbjct: 101 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 158
Query: 174 TENFLPTFQLKVLG-LPN 190
N ++++V+ LPN
Sbjct: 159 ENNATSEYRIEVVKRLPN 176
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
Query: 54 LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLD 113
L+ LK + L LS NNI S G+ L+ LS G N+ + + L+ L
Sbjct: 44 LSTLKACKHLALSTNNIEKISSLSGMENLRILS----LGRNLIKKIENLDAVADTLEELW 99
Query: 114 ISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVK 173
ISYNQ++ S I L +L L + +N ++ LA KLE LLL+ K
Sbjct: 100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157
Query: 174 TENFLPTFQLKVLG-LPN 190
N ++++V+ LPN
Sbjct: 158 ENNATSEYRIEVVKRLPN 175
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 12/142 (8%)
Query: 32 FANLTNLKILDLSGCGITT-----LQGLTKLKNLEALDLSYNN-ISGSSESQGVCELKNL 85
NL NL+ LDLS I T LQ L L +L++L+LSYN +S +E+ C L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQ-LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
Query: 86 SEFILRGINIK-GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFE 144
+ + +K P +NL LKVL++S++ L + L +L++L L N+F
Sbjct: 405 LDLAFTRLKVKDAQSP--FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462
Query: 145 GTFL--LNSLANHSKLEVLLLS 164
+ NSL +LE+L+LS
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLS 484
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 108/267 (40%), Gaps = 67/267 (25%)
Query: 37 NLKILDL-SGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINI 95
N K L+L +GC L L+NL LDLS+++I E+ C L+
Sbjct: 335 NTKRLELGTGC-------LENLENLRELDLSHDDI----ETSDCCNLQ------------ 371
Query: 96 KGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANH 155
L+NLSHL+ L++SYN+ A LE L L + + N
Sbjct: 372 -------LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424
Query: 156 SKLEVLLLSSRTNMLSVKTENF---LPTFQ-LKVLG--LPNYNLKVIPSFXXXXXXXXXX 209
L+VL LS ++L + +E LP Q L + G P N++
Sbjct: 425 HLLKVLNLSH--SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ--------------- 467
Query: 210 XXSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKL 269
T L+ +LE L L+ + Q T ++H+D+S+N LT
Sbjct: 468 -----------KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSS 516
Query: 270 PEDMGIILQKLLYIDMSDNRFEGYLPS 296
E + + K +Y++++ N LPS
Sbjct: 517 IEALSHL--KGIYLNLASNHISIILPS 541
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 119/306 (38%), Gaps = 48/306 (15%)
Query: 394 WIGNFSSDLKVLLMSKMFLKG--NIPAQLLN---HGSLNLLSVSENCLSGPMTSSFNLSS 448
W+G F D+ +S +G + + +N H N+ S + +C SG
Sbjct: 231 WLGTFE-DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG---------- 279
Query: 449 LEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLE 508
L+ L L LS +P L S L L L N+F + S +L L ++GN
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 509 GQI-PNQLCQLRRLGVLDLSHNRISGSIPSCLTIML----------------LWVAGNVY 551
++ L L L LDLSH+ I S C + L L + +
Sbjct: 339 LELGTGCLENLENLRELDLSHDDIETS--DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF 396
Query: 552 LHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNI 611
P L+ F S F H V ++ L+ + + +L++G +
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLK-VLNLSHSLLDI-----SSEQLFDG--L 448
Query: 612 KYMVGLDLSCNQLTGGIPSEIGDLQIRG----LNLSYNFLSGSIPGSFSNLKWIESLDLS 667
+ L+L N G + LQ G L LS+ LS +F++LK + +DLS
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508
Query: 668 HNRLSG 673
HNRL+
Sbjct: 509 HNRLTS 514
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 85/342 (24%), Positives = 146/342 (42%), Gaps = 56/342 (16%)
Query: 16 WLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSS 74
+ FN +SN F + L+ LDL+ ++ L GL L L+ L LS N
Sbjct: 265 YFFNISSNT-------FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF---- 313
Query: 75 ESQGVCELKNLSEFILRGINIKGHLPD------CLKNLSHLKVLDISYNQLSGTLPSAIT 128
+ +C++ + L ++IKG+ CL+NL +L+ LD+S++ + + +
Sbjct: 314 --ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL- 370
Query: 129 TLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGL 188
L N S L+ L LS LS+KTE F QL++L L
Sbjct: 371 ----------------------QLRNLSHLQSLNLS-YNEPLSLKTEAFKECPQLELLDL 407
Query: 189 PNYNLKVIPSFXXXXXXXXXXXXSGNNLVGDFPTWVLRNN-TKLEALFLTNNSF-TGNLQ 246
LKV + + ++ + D + L + L+ L L N F GN+Q
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467
Query: 247 LPKTKHDF--LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKAL 304
+ L L +S +L+ + + L+ + ++D+S NR ++ +K
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG- 525
Query: 305 IFLRLPKNNFSGELPA--PLLTGCISLGL----LDLSGNNFY 340
I+L L N+ S LP+ P+L+ ++ L LD + +N Y
Sbjct: 526 IYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIY 567
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 53 GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVL 112
GLT+ +++LDLS N I+ S S + NL +L I D +L L+ L
Sbjct: 49 GLTEA--VKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105
Query: 113 DISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANH-SKLEVLLLSSRTNMLS 171
D+SYN LS S L+SL +L LL N ++ T SL +H +KL++L + +
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTK 164
Query: 172 VKTEN-----FLPTFQLKVLGLPNYNLKVIPSF 199
++ ++ FL ++ L +Y K + S
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 23/85 (27%)
Query: 54 LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLD 113
L KL NL+ LDLS+N+I E+ C L+ LKNLSHL+ L+
Sbjct: 343 LEKLGNLQTLDLSHNDI----EASDCCSLQ-------------------LKNLSHLQTLN 379
Query: 114 ISYNQLSGTLPSAITTLTSLEYLAL 138
+S+N+ G A LE L L
Sbjct: 380 LSHNEPLGLQSQAFKECPQLELLDL 404
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 13/152 (8%)
Query: 35 LTNLKILDLSGCGITT-----LQGLTKLKNLEALDLSYNNISG-SSESQGVCELKNLSEF 88
L NL+ LDLS I LQ L L++L+ L+LSYN G ++ C L +
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQ-LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDV 406
Query: 89 ILRGINIKG-HLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTF 147
+++K H P +NL L+VL++S+ L + + L L +L L N+F+
Sbjct: 407 AFTHLHVKAPHSP--FQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS 464
Query: 148 L--LNSLANHSKLEVLLLSSRTNMLSVKTENF 177
+ N L LE+L+LSS N+LS+ + F
Sbjct: 465 ISKTNLLQMVGSLEILILSS-CNLLSIDQQAF 495
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 29/100 (29%)
Query: 37 NLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIK 96
N++ LDL + L KL+NL+ LDLS+++I E+ C L+
Sbjct: 334 NMRKLDLGT------RCLEKLENLQKLDLSHSDI----EASDCCNLQ------------- 370
Query: 97 GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYL 136
LKNL HL+ L++SYN+ G A LE L
Sbjct: 371 ------LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 38 LKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINI 95
L+IL LS C + ++ Q L+N+ LDLS+N+++G S + LK L + NI
Sbjct: 477 LEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDS-MDALSHLKGLY-LNMASNNI 534
Query: 96 KGHLPDCLKNLSHLKVLDISYNQLSGT 122
+ P L LS ++++S+N L T
Sbjct: 535 RIIPPHLLPALSQQSIINLSHNPLDCT 561
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 22 SNILFFIVVG----------FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNN 69
+N+ + I+ G F LTNLK L L + +L KL NL L+L++N
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ 144
Query: 70 ISGSSESQGVCE-LKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAIT 128
+ S +GV + L NL+E L ++ L+ LK L + NQL
Sbjct: 145 LQ--SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD 202
Query: 129 TLTSLEYLALLDNNFEGT 146
LTSL+Y+ L DN ++ T
Sbjct: 203 RLTSLQYIWLHDNPWDCT 220
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 68/155 (43%), Gaps = 13/155 (8%)
Query: 48 ITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLS 107
I ++QG+ L N+ L L N + S + EL NL+ IL G ++ L+
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLPNGVFDKLT 109
Query: 108 HLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFE----GTFLLNSLANHSKLEVLLL 163
+LK L + NQL LT+L YL L N + G F + L N ++L++
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF--DKLTNLTELDL--- 164
Query: 164 SSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPS 198
S + S+ F QLK L L LK +P
Sbjct: 165 -SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 62 ALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG 121
ALDLS N+ + S + + L+ L G N LP +KNLS+L+VLD+S+N+L+
Sbjct: 228 ALDLS--NLQIFNISANIFKYDFLTRLYLNG-NSLTELPAEIKNLSNLRVLDLSHNRLT- 283
Query: 122 TLPSAITTLTSLEYLALLDN 141
+LP+ + + L+Y DN
Sbjct: 284 SLPAELGSCFQLKYFYFFDN 303
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 497 LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP----SCLTIMLLWVAGNVYL 552
L L L GN L ++P ++ L L VLDLSHNR++ S+P SC + + N+
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT 306
Query: 553 HEPY 556
P+
Sbjct: 307 TLPW 310
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 74/153 (48%), Gaps = 10/153 (6%)
Query: 53 GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVL 112
GLT+ +++LDLS N I+ S S + NL +L I D +L L+ L
Sbjct: 23 GLTEA--VKSLDLSNNRITYISNSD-LQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 79
Query: 113 DISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANH-SKLEVLLLSSRTNMLS 171
D+SYN LS S L+SL +L LL N ++ T SL +H +KL++L + +
Sbjct: 80 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTK 138
Query: 172 VKTEN-----FLPTFQLKVLGLPNYNLKVIPSF 199
++ ++ FL ++ L +Y K + S
Sbjct: 139 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 171
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 34 NLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
NL L++ D +T L+ LTK+ LE LS N + S G+ +K L L
Sbjct: 70 NLIGLELKDNQITDLTPLKNLTKITELE---LSGNPLKNVSAIAGLQSIKTLD---LTST 123
Query: 94 NIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLA 153
I P L LS+L+VL + NQ++ P A LT+L+YL++ +N L LA
Sbjct: 124 QITDVTP--LAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNNQVND---LTPLA 176
Query: 154 NHSKLEVL 161
N SKL L
Sbjct: 177 NLSKLTTL 184
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 10/136 (7%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
V A L ++K LDL+ IT + L L NL+ L L N I+ S G+ L+ LS
Sbjct: 106 VSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS-- 163
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFL 148
G N L L NLS L L N++S P A +L +L + L DN
Sbjct: 164 --IGNNQVNDL-TPLANLSKLTTLRADDNKISDISPLA--SLPNLIEVHLKDNQISD--- 215
Query: 149 LNSLANHSKLEVLLLS 164
++ LAN S L ++ L+
Sbjct: 216 VSPLANLSNLFIVTLT 231
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 13/155 (8%)
Query: 48 ITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLS 107
I ++QG+ L N+ L L N + S + EL NL+ IL G ++ L+
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNKLHDIS---ALKELTNLTYLILTGNQLQSLPNGVFDKLT 109
Query: 108 HLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFE----GTFLLNSLANHSKLEVLLL 163
+LK L + NQL LT+L YL L N + G F + L N ++L++
Sbjct: 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVF--DKLTNLTRLDL--- 164
Query: 164 SSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPS 198
+ S+ F QLK L L + LK +P
Sbjct: 165 -DNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 22 SNILFFIVVG----------FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNN 69
+N+ + I+ G F LTNLK L L + +L KL NL L L +N
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQ 144
Query: 70 ISGSSESQGVCE-LKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAIT 128
+ S +GV + L NL+ L ++ L+ LK L ++ NQL
Sbjct: 145 LQ--SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFD 202
Query: 129 TLTSLEYLALLDNNFE 144
LTSL ++ LL+N ++
Sbjct: 203 RLTSLTHIWLLNNPWD 218
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 31 GFANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGV-CELKNLSE 87
F LT L++L L+ + TL +LKNLE L ++ N + GV +L NL+E
Sbjct: 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAE 113
Query: 88 FILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNF---- 143
L +K P +L+ L L + YN+L LTSL+ L L +N
Sbjct: 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173
Query: 144 EGTF 147
EG F
Sbjct: 174 EGAF 177
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 71/187 (37%), Gaps = 7/187 (3%)
Query: 107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
+ K LD+ N+LS A LT L L L DN + T LE L ++
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD- 94
Query: 167 TNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFXXXXXXXXXXXXSGNNLVGDFPTWVLR 226
+ ++ F L L L LK +P G N + P V
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154
Query: 227 NNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDV--SNNNLTGKLPEDMGIILQKLLYID 284
T L+ L L NN ++P+ D L L +NN ++PE L+KL +
Sbjct: 155 KLTSLKELRLYNNQLK---RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Query: 285 MSDNRFE 291
+ +N ++
Sbjct: 212 LQENPWD 218
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 30 VGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNIS--GSSESQGVCELKNLSE 87
F L NL+ L+L C + + LT L LE L+LS N + QG+ L+ L
Sbjct: 150 AAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
Query: 88 FILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDN 141
+ I+ + D LK+L L++S+N L T L LE + L N
Sbjct: 210 MHAQVATIERNAFDDLKSLEE---LNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 62/122 (50%), Gaps = 14/122 (11%)
Query: 414 GNIPAQL-LNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS- 470
+PA + +N LNL EN + T +F +L LE L L N L I + F
Sbjct: 27 AEVPASIPVNTRYLNL---QENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGAFNGL 82
Query: 471 SNLITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNYLEGQIP----NQLCQLRRLGVLD 525
+L TL+L DNR + V P Q E L+ LR L LR N +E IP N++ LRRL + +
Sbjct: 83 PSLNTLELFDNRLTTV-PTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGE 140
Query: 526 LS 527
L
Sbjct: 141 LK 142
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 31 GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSES--QGVCELKNLSEF 88
F L+NL+ L+L+ C + + LT L L+ LDLS N++S QG+ L+ L
Sbjct: 180 AFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKL-WM 238
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDN 141
I I + + NL L +++++N L+ T L LE + L N
Sbjct: 239 IQSQIQVIER--NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Query: 619 LSC--NQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNL-KWIESLDLSHNRL 671
L C NQL G +P+ ++++ LNL+YN ++ IP +F + +E+L +HN+L
Sbjct: 335 LECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL 389
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 48 ITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLS 107
I +L G+ NL+ L LS+N IS S + + +L+ LS R N+ G CL L
Sbjct: 53 IQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLF 112
Query: 108 HLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLL 163
+ N+L T ++ L +LE L++ +N + +L L SKLEVL L
Sbjct: 113 ------LDNNELRDT--DSLIHLKNLEILSIRNNKLKSIVMLGFL---SKLEVLDL 157
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 27 FIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLS 66
+++GF L+ L++LDL G IT GLT+LK + +DL+
Sbjct: 143 IVMLGF--LSKLEVLDLHGNEITNTGGLTRLKKVNWIDLT 180
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 30 VGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNIS--GSSESQGVCELKNLSE 87
F L NL+ L+L C + + LT L LE L+LS N + QG+ L+ L
Sbjct: 150 AAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWL 209
Query: 88 FILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDN 141
+ I+ + D LK+L L++S+N L T L LE + L N
Sbjct: 210 MHAQVATIERNAFDDLKSLEE---LNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 14/123 (11%)
Query: 414 GNIPAQL-LNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS- 470
+PA + +N LNL EN + T +F +L LE L L N L I + F
Sbjct: 27 AEVPASIPVNTRYLNL---QENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGAFNGL 82
Query: 471 SNLITLDLRDNRFSGVIPHQISESLT-LRFLLLRGNYLEGQIP----NQLCQLRRLGVLD 525
+L TL+L DNR + +P Q E L+ LR L LR N +E IP N++ LRRL + +
Sbjct: 83 PSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGE 140
Query: 526 LSH 528
L
Sbjct: 141 LKR 143
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 446 LSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
L++L++LYLQ N+L +P FR NL L L NR V H +L LLL
Sbjct: 127 LAALQYLYLQDNNLQA-LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQ 185
Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRIS 532
N++ P+ L RL L L N +S
Sbjct: 186 NHVARVHPHAFRDLGRLMTLYLFANNLS 213
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 56/150 (37%), Gaps = 37/150 (24%)
Query: 1 MPTSVGPKLEQRSNKWLFNNASNILFFIVVGFANLTNLKIL-----DLSGCGITTLQGLT 55
+PT + P QR +F + + I + F + NL IL L+G GLT
Sbjct: 25 VPTGI-PASSQR----IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLT 79
Query: 56 KLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDIS 115
L E LDLS N +L+ + RG L HL L +
Sbjct: 80 LL---EQLDLSDN-----------AQLRVVDPTTFRG-------------LGHLHTLHLD 112
Query: 116 YNQLSGTLPSAITTLTSLEYLALLDNNFEG 145
L P L +L+YL L DNN +
Sbjct: 113 RCGLQELGPGLFRGLAALQYLYLQDNNLQA 142
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 31 GFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
F + L++LDLS C I T++ L +L L L+ N I S L +L +
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQL-SGTLPSAITTLTSLEYLALLDNNFEGTF 147
+ N+ + +L LK L++++N + S LP + LT+LE+L L N + +
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 632 IGDLQ-IRGLNLSYNFL-SGSIPGSFSNLKWIESLDLSHNRLSG 673
IG L+ ++ LN+++N + S +P FSNL +E LDLS N++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 31 GFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
F + L++LDLS C I T++ L +L L L+ N I S L +L +
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 107
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQL-SGTLPSAITTLTSLEYLALLDNNFEGTF 147
+ N+ + +L LK L++++N + S LP + LT+LE+L L N + +
Sbjct: 108 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 632 IGDLQ-IRGLNLSYNFL-SGSIPGSFSNLKWIESLDLSHNRLSG 673
IG L+ ++ LN+++N + S +P FSNL +E LDLS N++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 31 GFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
F + L++LDLS C I T++ L +L L L+ N I S L +L +
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 106
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQL-SGTLPSAITTLTSLEYLALLDNNFEGTF 147
+ N+ + +L LK L++++N + S LP + LT+LE+L L N + +
Sbjct: 107 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 632 IGDLQ-IRGLNLSYNFL-SGSIPGSFSNLKWIESLDLSHNRLSG 673
IG L+ ++ LN+++N + S +P FSNL +E LDLS N++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 32 FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNISGSSESQGVCE-LKNLSEF 88
F LT+L L L G + +L KL +L L+LS N + S GV + L L E
Sbjct: 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ--SLPNGVFDKLTQLKEL 105
Query: 89 ILRGINIKGHLPD-CLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGT 146
L ++ LPD L+ LK L + NQL LTSL+Y+ L DN ++ T
Sbjct: 106 ALNTNQLQS-LPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 31 GFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
F + L++LDLS C I T++ L +L L L+ N I S L +L +
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 107
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQL-SGTLPSAITTLTSLEYLALLDNNFEGTF 147
+ N+ + +L LK L++++N + S LP + LT+LE+L L N + +
Sbjct: 108 VALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 167
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 632 IGDLQ-IRGLNLSYNFL-SGSIPGSFSNLKWIESLDLSHNRLSG 673
IG L+ ++ LN+++N + S +P FSNL +E LDLS N++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 31 GFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
F + L++LDLS C I T++ L +L L L+ N I S L +L +
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 106
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQL-SGTLPSAITTLTSLEYLALLDNNFEGTF 147
+ N+ + +L LK L++++N + S LP + LT+LE+L L N + +
Sbjct: 107 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 166
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 632 IGDLQ-IRGLNLSYNFL-SGSIPGSFSNLKWIESLDLSHNRLSG 673
IG L+ ++ LN+++N + S +P FSNL +E LDLS N++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 424 GSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDN 481
+L L + +N L +F +L +L HL+L N +S +P FR +L L L N
Sbjct: 128 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQN 186
Query: 482 RFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN 529
R + V PH + L L L N L L LR L L L+ N
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 446 LSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
L++L++LYLQ N+L +P FR NL L L NR S V +L LLL
Sbjct: 127 LAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 185
Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRISG 533
N + P+ L RL L L N +S
Sbjct: 186 NRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
Query: 424 GSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDN 481
+L L + +N L +F +L +L HL+L N +S +P FR +L L L N
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQN 187
Query: 482 RFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN 529
R + V PH + L L L N L L LR L L L+ N
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 446 LSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
L++L++LYLQ N+L +P FR NL L L NR S V +L LLL
Sbjct: 128 LAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186
Query: 505 NYLEGQIPNQLCQLRRLGVLDLSHNRISG 533
N + P+ L RL L L N +S
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 11/147 (7%)
Query: 63 LDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGT 122
LDLS+NN+S L NL +L ++ + + +L+ LD+S N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 123 LPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLS----SRTNMLSVKTENFL 178
+ L +LE L LL NN N+ + ++L+ L LS SR + +K N L
Sbjct: 104 DEFLFSDLQALEVL-LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL 162
Query: 179 PTFQL------KVLGLPNYNLKVIPSF 199
P L K+ LP +L+ +P++
Sbjct: 163 PKLMLLDLSSNKLKKLPLTDLQKLPAW 189
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 31 GFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
F + L++LDLS C I T++ L +L L L+ N I S L +L +
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQL-SGTLPSAITTLTSLEYLALLDNNFEGTF 147
+ N+ + +L LK L++++N + S LP + LT+LE+L L N + +
Sbjct: 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 32 FANLTNLKILDLSGCGI-TTLQGL-TKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
F +L NL LD+S G+ L +LE L ++ N+ + EL+NL+
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 90 LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDN 141
L ++ P +LS L+VL+++ NQL LTSL+ + L N
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 440 MTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS-SNLITLDLRDNRFSGVIPHQISESLTL 497
M+S+F L LEHL Q ++L ++F S NLI LD+ + +L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 498 RFLLLRGN-YLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537
L + GN + E +P+ +LR L LDLS ++ P+
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF 314
L HLD ++NL + + L+ L+Y+D+S + +L L++ N+F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 315 SGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMN-LTQLEFLYLENNK 362
+ T +L LDLS Q+ P N L+ L+ L + +N+
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASNQ 505
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 632 IGDLQ-IRGLNLSYNFL-SGSIPGSFSNLKWIESLDLSHNRL 671
IG L+ ++ LN+++N + S +P FSNL +E LDLS N++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 5/175 (2%)
Query: 27 FIVVGFANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQGVCELKN 84
F+ V T ++LDL I TL +LE L+L+ NI + E L N
Sbjct: 23 FVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELN-ENIVSAVEPGAFNNLFN 81
Query: 85 LSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFE 144
L LR +K LS+L LDIS N++ L L +L+ L + DN+
Sbjct: 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141
Query: 145 GTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSF 199
+ + + LE L L + N+ S+ TE L VL L + N+ I +
Sbjct: 142 -YISHRAFSGLNSLEQLTL-EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 22 SNILFFIVVGFANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQGV 79
+ I+ + F +L NLK L++ + + + + L +LE L L N++ S ++ +
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEAL 172
Query: 80 CELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISY 116
L L LR +NI K L LKVL+IS+
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
Query: 32 FANLTNLKILDLSG--CGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89
F +L NLK L L G + L L LDL N ++ S L +L E
Sbjct: 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELF 118
Query: 90 LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEG---- 145
+ N LP ++ L+HL L + NQL A L+SL + L N ++
Sbjct: 119 M-CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177
Query: 146 -TFLLNSLANHSKL 158
+L N +A+H+ +
Sbjct: 178 IMYLRNWVADHTSI 191
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN 505
L LE LYL N ++ L R + L TL L DN+ S ++P ++ L+ L L N
Sbjct: 128 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKN 183
Query: 506 YLEGQIPNQLCQLRRLGVLDL 526
++ LC L+ L VL+L
Sbjct: 184 HISDL--RALCGLKNLDVLEL 202
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 3 TSVGPKLEQRSNKWLFNNASNILF-FIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLE 61
T++ P L + + + + + N+L+ F + T L L+L C +T LQ L L
Sbjct: 24 TALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLG 81
Query: 62 ALDLSYNNI-SGSSESQGVCELKNLSEFILRGINIKGHLP-DCLKNLSHLKVLDISYNQL 119
LDLS+N + S Q + L L N LP L+ L L+ L + N+L
Sbjct: 82 TLDLSHNQLQSLPLLGQTLPALTVLD----VSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Query: 120 SGTLPSAITTLTSLEYLALLDNNFE--GTFLLNSLANHSKLEVLLLSSRT 167
P +T LE L+L +NN LLN L N L+ LLL +
Sbjct: 138 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN---LDTLLLQENS 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 3 TSVGPKLEQRSNKWLFNNASNILF-FIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLE 61
T++ P L + + + + + N+L+ F + T L L+L C +T LQ L L
Sbjct: 23 TALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLG 80
Query: 62 ALDLSYNNI-SGSSESQGVCELKNLSEFILRGINIKGHLP-DCLKNLSHLKVLDISYNQL 119
LDLS+N + S Q + L L N LP L+ L L+ L + N+L
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLD----VSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Query: 120 SGTLPSAITTLTSLEYLALLDNNFE--GTFLLNSLANHSKLEVLLLSSRT 167
P +T LE L+L +NN LLN L N L+ LLL +
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN---LDTLLLQENS 183
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 68/165 (41%), Gaps = 26/165 (15%)
Query: 21 ASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNI---------- 70
A+N V G L N+ L L+G +T ++ LT LKNL L L N I
Sbjct: 50 ANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLK 109
Query: 71 ---------SGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG 121
+G S+ G+ L L L I L L+ L L + NQ+S
Sbjct: 110 KLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISD 167
Query: 122 TLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
+P A LT L+ L L N+ L +LA L+VL L S+
Sbjct: 168 IVPLA--GLTKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQ 207
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 74/193 (38%), Gaps = 48/193 (24%)
Query: 36 TNLKILDLSGCGITTLQGL--------TKLKNLEALDLSYNNISGSSESQGVCELKNLSE 87
T++ LDLSG G TK+++L L SYN S S G K+
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL-ILSNSYNMGS----SFGHTNFKDPDN 266
Query: 88 FILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDN------ 141
F +G+ G +K D+S +++ L S + T LE L L N
Sbjct: 267 FTFKGLEASG-----------VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315
Query: 142 -----------------NFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLK 184
NF G+ N KLEVL L S ++ ++ ++FL LK
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL-SYNHIRALGDQSFLGLPNLK 374
Query: 185 VLGLPNYNLKVIP 197
L L LK +P
Sbjct: 375 ELALDTNQLKSVP 387
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 30/164 (18%)
Query: 3 TSVGPKLEQRSNKWLFNNASNILF-FIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLE 61
T++ P L + + + + + N+L+ F + T L L+L C +T LQ L L
Sbjct: 23 TALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLG 80
Query: 62 ALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG 121
LDLS+N + LP + L L VLD+S+N+L+
Sbjct: 81 TLDLSHNQLQS--------------------------LPLLGQTLPALTVLDVSFNRLTS 114
Query: 122 TLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSS 165
A+ L L+ L L N + T L KLE L L++
Sbjct: 115 LPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 30/164 (18%)
Query: 3 TSVGPKLEQRSNKWLFNNASNILF-FIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLE 61
T++ P L + + + + + N+L+ F + T L L+L C +T LQ L L
Sbjct: 23 TALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLG 80
Query: 62 ALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG 121
LDLS+N + LP + L L VLD+S+N+L+
Sbjct: 81 TLDLSHNQLQS--------------------------LPLLGQTLPALTVLDVSFNRLTS 114
Query: 122 TLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSS 165
A+ L L+ L L N + T L KLE L L++
Sbjct: 115 LPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 30/164 (18%)
Query: 3 TSVGPKLEQRSNKWLFNNASNILF-FIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLE 61
T++ P L + + + + + N+L+ F + T L L+L C +T LQ L L
Sbjct: 23 TALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLG 80
Query: 62 ALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG 121
LDLS+N + LP + L L VLD+S+N+L+
Sbjct: 81 TLDLSHNQLQS--------------------------LPLLGQTLPALTVLDVSFNRLTS 114
Query: 122 TLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSS 165
A+ L L+ L L N + T L KLE L L++
Sbjct: 115 LPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 30/164 (18%)
Query: 3 TSVGPKLEQRSNKWLFNNASNILF-FIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLE 61
T++ P L + + + + + N+L+ F + T L L+L C +T LQ L L
Sbjct: 23 TALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLG 80
Query: 62 ALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG 121
LDLS+N + LP + L L VLD+S+N+L+
Sbjct: 81 TLDLSHNQLQS--------------------------LPLLGQTLPALTVLDVSFNRLTS 114
Query: 122 TLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSS 165
A+ L L+ L L N + T L KLE L L++
Sbjct: 115 LPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 30/164 (18%)
Query: 3 TSVGPKLEQRSNKWLFNNASNILF-FIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLE 61
T++ P L + + + + + N+L+ F + T L L+L C +T LQ L L
Sbjct: 23 TALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLG 80
Query: 62 ALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG 121
LDLS+N + LP + L L VLD+S+N+L+
Sbjct: 81 TLDLSHNQLQS--------------------------LPLLGQTLPALTVLDVSFNRLTS 114
Query: 122 TLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSS 165
A+ L L+ L L N + T L KLE L L++
Sbjct: 115 LPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 45/113 (39%), Gaps = 25/113 (22%)
Query: 31 GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90
F L NLK L+L C I + LT L LE L++S N+ E++
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP---------EIR------- 234
Query: 91 RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNF 143
P LS LK L + +Q+S +A L SL L L NN
Sbjct: 235 ---------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 13/78 (16%)
Query: 76 SQGVCELKNLSEFILRGI------------NIKGHLPDCLKNLSHLKVLDISYNQLSGTL 123
S+ VC + LSE + +GI NI+ D ++L HL+VL + N +
Sbjct: 57 SKVVCTRRGLSE-VPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115
Query: 124 PSAITTLTSLEYLALLDN 141
A L SL L L DN
Sbjct: 116 VGAFNGLASLNTLELFDN 133
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 41 LDLSGCGITTLQGLTKLKNLEALDLSYNN-ISGSSESQGVCELKNLS---EFILRGINIK 96
L SGC + G L++L DLS+N I S+ G+ EL++L + R
Sbjct: 362 LSFSGCCSYSDLGTNSLRHL---DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418
Query: 97 GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHS 156
L +L L LDISY LTSL L + N+F+ L N AN +
Sbjct: 419 AFL-----SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473
Query: 157 KLEVLLLS 164
L L LS
Sbjct: 474 NLTFLDLS 481
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 32 FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNI 70
FAN TNL LDLS C + + L L+ L++S+NN+
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 13/162 (8%)
Query: 41 LDLSGCGITTLQGLTKLKNLEALDLSYNN-ISGSSESQGVCELKNLS---EFILRGINIK 96
L SGC + G L++L DLS+N I S+ G+ EL++L + R
Sbjct: 357 LSFSGCCSYSDLGTNSLRHL---DLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 413
Query: 97 GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHS 156
L +L L LDISY LTSL L + N+F+ L N AN +
Sbjct: 414 AFL-----SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 468
Query: 157 KLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPS 198
L L L S+ + + F +L++L + + NL + S
Sbjct: 469 NLTFLDL-SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 509
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 32 FANLTNLKILDLSGCGITTLQG--LTKLKNLEALDLSYNNI 70
FAN TNL LDLS C + + L L+ L++S+NN+
Sbjct: 464 FANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
>pdb|3GS9|A Chain A, Crystal Structure Of Prophage Tail Protein Gp18
(Np_465809.1) From Listeria Monocytogenes Egd-E At 1.70
A Resolution
Length = 342
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 231 LEALFLTNNS-FTGNLQLPKTKHDFLHHLDVSNNN---LTGKLPEDMGIILQKLLYIDMS 286
L +F T+N F+ + P + + + NNN L +L +D G+++ +
Sbjct: 115 LTHIFXTDNRGFSWEIIDPSNILEXVQQENFGNNNYLTLIDQLLDDYGVVV-------IP 167
Query: 287 DNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLL---TGCISLGLLDLSGNNFYGQI 343
DNR + P I K F+R N L T G +D +GNN++ I
Sbjct: 168 DNRHLVFXPREIYGAKTENFIRYXYNTDEASFDIDTLSLXTXIXGYGXVDSNGNNYFSPI 227
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 82 LKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDN 141
L++L +LR I D LS +++L + NQ++ P A TL SL L LL N
Sbjct: 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
Query: 142 NF 143
F
Sbjct: 164 PF 165
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 583 NGVYSIFPQLVKVEF----MTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEI--GDLQ 636
+G++ P LVK+E +T + G++ ++ L L N++ I +++ G Q
Sbjct: 47 DGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS--HIQELQLGENKIKE-ISNKMFLGLHQ 103
Query: 637 IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHN 669
++ LNL N +S +PGSF +L + SL+L+ N
Sbjct: 104 LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 64/157 (40%), Gaps = 26/157 (16%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNI------------------ 70
V G L N+ L L+G +T ++ L LKNL L L N +
Sbjct: 61 VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120
Query: 71 -SGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITT 129
+G S+ G+ L L L I L L+ L L + NQ+S +P A
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--G 176
Query: 130 LTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
LT L+ L L N+ L +LA L+VL L S+
Sbjct: 177 LTKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQ 210
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504
+L LE LYL N ++ L R + L TL L DN+ S ++P ++ L+ L L
Sbjct: 132 HLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 505 NYLEGQIPNQLCQLRRLGVLDL 526
N++ L L+ L VL+L
Sbjct: 188 NHISDL--RALAGLKNLDVLEL 207
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
+ G LTNL+ L+L+G IT + L+ L L L + N I+ S Q L NL E
Sbjct: 59 IQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQN---LTNLREL 115
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLAL 138
L NI P L NL+ L++ N L S ++ T L YL +
Sbjct: 116 YLNEDNISDISP--LANLTKXYSLNLGANHNLSDL-SPLSNXTGLNYLTV 162
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEF 88
VV L ++ L ++G + ++QG+ L NLE L+L+ N I+ S + +L NL +
Sbjct: 37 VVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNL--Y 94
Query: 89 ILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSA 126
I G N + L+NL++L+ L ++ + +S P A
Sbjct: 95 I--GTNKITDIS-ALQNLTNLRELYLNEDNISDISPLA 129
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 623 QLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKW--IESLDLSHNRL 671
LT + E+ + I+ L+L+ N L + +FS LKW + LDLS+N L
Sbjct: 210 HLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNL 260
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 11/107 (10%)
Query: 49 TTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSH 108
+T GL K NL LDLSYNN+ L +L L NI+ P LS+
Sbjct: 240 STFSGL-KWTNLTQLDLSYNNLHDVGNG-SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSN 297
Query: 109 LKVLDI--SYNQLSGTLPS-------AITTLTSLEYLALLDNNFEGT 146
L+ L + ++ + S +L S + L LEYL + DNN T
Sbjct: 298 LRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPST 344
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 99 LPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGT 146
+P + +L L+ L+++ NQL LTSL+Y+ L DN ++ T
Sbjct: 465 IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 26/157 (16%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNI------------------ 70
V G L N+ L L+G +T ++ LT LKNL L L N I
Sbjct: 79 VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 138
Query: 71 -SGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITT 129
+G S+ G+ L L L I L L+ L L + NQ+S +P A
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--G 194
Query: 130 LTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
LT L+ L L N+ L +LA L+VL L S+
Sbjct: 195 LTKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQ 228
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 26/157 (16%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNI------------------ 70
V G L N+ L L+G +T ++ LT LKNL L L N I
Sbjct: 79 VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 138
Query: 71 -SGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITT 129
+G S+ G+ L L L I L L+ L L + NQ+S +P A
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--G 194
Query: 130 LTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
LT L+ L L N+ L +LA L+VL L S+
Sbjct: 195 LTKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQ 228
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 26/157 (16%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNI------------------ 70
V G L N+ L L+G +T ++ LT LKNL L L N I
Sbjct: 79 VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 138
Query: 71 -SGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITT 129
+G S+ G+ L L L I L L+ L L + NQ+S +P A
Sbjct: 139 HNGISDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLA--G 194
Query: 130 LTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
LT L+ L L N+ L +LA L+VL L S+
Sbjct: 195 LTKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQ 228
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 65/157 (41%), Gaps = 26/157 (16%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNI------------------ 70
V G L N+ L L+G +T ++ LT LKNL L L N I
Sbjct: 56 VQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLE 115
Query: 71 -SGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITT 129
+G S+ G+ L L L I L L+ L L + NQ+S +P A
Sbjct: 116 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--G 171
Query: 130 LTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
LT L+ L L N+ L +LA L+VL L S+
Sbjct: 172 LTKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQ 205
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN 505
L LE LYL N ++ L R + L TL L DN+ S ++P ++ L+ L L N
Sbjct: 131 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 186
Query: 506 YLEGQIPNQLCQLRRLGVLDL 526
++ L L+ L VL+L
Sbjct: 187 HISDL--RALAGLKNLDVLEL 205
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN 505
L LE LYL N ++ L R + L TL L DN+ S ++P ++ L+ L L N
Sbjct: 133 LPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 506 YLEGQIPNQLCQLRRLGVLDL 526
++ L L+ L VL+L
Sbjct: 189 HISDL--RALAGLKNLDVLEL 207
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 64/157 (40%), Gaps = 26/157 (16%)
Query: 29 VVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNI------------------ 70
V G L N+ L L+G +T ++ L LKNL L L N +
Sbjct: 61 VQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120
Query: 71 -SGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITT 129
+G S+ G+ L L L I L L+ L L + NQ+S +P A
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLA--G 176
Query: 130 LTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166
LT L+ L L N+ L +LA L+VL L S+
Sbjct: 177 LTKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQ 210
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 118/294 (40%), Gaps = 81/294 (27%)
Query: 41 LDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSES--------------QGVCELKNLS 86
L+L+ G+++L L +LE+L S N+++ E + + +L L
Sbjct: 76 LELNNLGLSSLPELPP--HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLL 133
Query: 87 EFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGT 146
E++ N LP+ L+N S LK++D+ N L LP SLE++A +N E
Sbjct: 134 EYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE- 187
Query: 147 FLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQ----LKVLGLPNYNLKVIPSFXXX 202
LP Q L + N +LK +P
Sbjct: 188 -------------------------------LPELQNLPFLTAIYADNNSLKKLPDL--- 213
Query: 203 XXXXXXXXXSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSN 262
+GNN++ + P L+N L ++ NN LP + L L+V +
Sbjct: 214 -PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPS----LEALNVRD 266
Query: 263 NNLTGKLPEDMGIILQKLLYIDMSDNRFEG---------YLPSSIGEMKALIFL 307
N LT D+ + Q L ++D+S+N F G YL +S E+++L L
Sbjct: 267 NYLT-----DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 315
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 44 SGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93
+G IT +Q KLKNLEA D ++ G S S + L L+E G+
Sbjct: 914 TGDSITAVQA--KLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGV 961
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,205,907
Number of Sequences: 62578
Number of extensions: 900867
Number of successful extensions: 2745
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1750
Number of HSP's gapped (non-prelim): 592
length of query: 790
length of database: 14,973,337
effective HSP length: 107
effective length of query: 683
effective length of database: 8,277,491
effective search space: 5653526353
effective search space used: 5653526353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)