Query 036932
Match_columns 790
No_of_seqs 603 out of 5182
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 06:51:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.6E-65 5.6E-70 622.3 44.6 540 82-723 68-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.5E-59 7.6E-64 568.6 38.9 533 59-694 70-605 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 2.4E-42 5.3E-47 340.2 -10.7 498 78-702 40-545 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 7.8E-41 1.7E-45 329.6 -11.1 488 28-538 37-545 (565)
5 KOG4194 Membrane glycoprotein 100.0 6.7E-38 1.5E-42 322.2 7.5 384 232-717 81-469 (873)
6 KOG4194 Membrane glycoprotein 100.0 3.1E-37 6.7E-42 317.3 9.8 364 108-503 79-447 (873)
7 KOG0618 Serine/threonine phosp 100.0 8.5E-36 1.8E-40 323.1 -4.6 475 22-530 8-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.1E-35 4.6E-40 320.1 -3.2 441 106-694 44-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 7E-34 1.5E-38 294.2 -0.1 360 253-694 7-373 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 4.6E-33 9.9E-38 288.2 -0.6 365 81-508 5-375 (1255)
11 KOG4237 Extracellular matrix p 99.9 4E-28 8.6E-33 240.0 1.3 426 242-693 56-498 (498)
12 KOG4237 Extracellular matrix p 99.9 8.9E-26 1.9E-30 223.4 -4.7 394 257-697 50-478 (498)
13 PLN03210 Resistant to P. syrin 99.9 3.1E-22 6.6E-27 244.3 24.1 339 270-693 550-903 (1153)
14 PLN03210 Resistant to P. syrin 99.9 8.3E-22 1.8E-26 240.5 24.4 307 278-670 589-904 (1153)
15 PRK15387 E3 ubiquitin-protein 99.9 1.5E-21 3.2E-26 220.6 16.2 192 305-532 204-395 (788)
16 PRK15387 E3 ubiquitin-protein 99.9 1.7E-21 3.7E-26 220.1 16.1 264 327-702 201-464 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 2.7E-19 5.9E-24 203.9 12.8 223 376-698 221-447 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 5.1E-19 1.1E-23 201.7 13.1 229 255-540 180-408 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 2E-19 4.4E-24 191.2 4.7 281 331-695 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-18 3.6E-23 184.1 5.4 271 258-530 3-318 (319)
21 KOG0617 Ras suppressor protein 99.7 4.5E-19 9.7E-24 156.1 -3.8 187 440-701 26-217 (264)
22 PLN03150 hypothetical protein; 99.6 8.3E-16 1.8E-20 175.3 10.4 117 613-729 419-538 (623)
23 KOG0617 Ras suppressor protein 99.6 1.2E-16 2.6E-21 140.9 -2.7 174 352-532 34-212 (264)
24 KOG0532 Leucine-rich repeat (L 99.4 3.1E-14 6.8E-19 148.4 -2.4 191 426-693 77-270 (722)
25 KOG0532 Leucine-rich repeat (L 99.3 2.3E-13 5.1E-18 142.0 -2.9 132 402-539 77-208 (722)
26 COG4886 Leucine-rich repeat (L 99.3 6.3E-12 1.4E-16 137.5 7.7 198 428-702 97-296 (394)
27 PLN03150 hypothetical protein; 99.2 1.3E-11 2.8E-16 141.1 8.1 91 611-701 441-533 (623)
28 COG4886 Leucine-rich repeat (L 99.1 6.2E-11 1.3E-15 129.7 7.5 182 424-681 116-299 (394)
29 PF14580 LRR_9: Leucine-rich r 99.1 4.4E-11 9.5E-16 111.6 4.8 130 31-164 14-148 (175)
30 PF14580 LRR_9: Leucine-rich r 99.1 8.1E-11 1.8E-15 109.8 4.2 121 43-168 4-125 (175)
31 KOG3207 Beta-tubulin folding c 99.1 7.9E-11 1.7E-15 119.8 3.4 208 179-388 119-339 (505)
32 KOG1909 Ran GTPase-activating 99.0 3.7E-11 8.1E-16 119.0 0.8 114 419-532 87-226 (382)
33 KOG1259 Nischarin, modulator o 99.0 5.2E-11 1.1E-15 115.0 1.4 130 495-699 284-415 (490)
34 KOG1909 Ran GTPase-activating 99.0 8.1E-11 1.8E-15 116.6 2.1 196 325-532 90-311 (382)
35 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.5E-15 118.6 0.9 210 33-244 118-341 (505)
36 KOG1259 Nischarin, modulator o 98.9 7.3E-10 1.6E-14 107.1 2.1 128 402-534 286-414 (490)
37 KOG4658 Apoptotic ATPase [Sign 98.8 3.2E-09 6.8E-14 124.0 6.2 132 32-166 519-652 (889)
38 PF13855 LRR_8: Leucine rich r 98.8 3.5E-09 7.7E-14 81.1 3.7 59 637-695 3-61 (61)
39 KOG0531 Protein phosphatase 1, 98.8 1.9E-09 4.1E-14 118.1 0.9 190 15-217 75-268 (414)
40 PF13855 LRR_8: Leucine rich r 98.7 1.2E-08 2.7E-13 78.1 3.7 60 472-531 2-61 (61)
41 KOG0531 Protein phosphatase 1, 98.7 3.8E-09 8.2E-14 115.7 -0.5 248 277-537 71-323 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.6 7.1E-08 1.5E-12 112.9 7.4 273 229-510 523-809 (889)
43 KOG4579 Leucine-rich repeat (L 98.4 2.1E-08 4.5E-13 86.1 -2.5 85 613-701 54-140 (177)
44 KOG2120 SCF ubiquitin ligase, 98.2 8E-08 1.7E-12 93.4 -2.7 179 205-385 186-373 (419)
45 KOG2120 SCF ubiquitin ligase, 98.2 8.7E-08 1.9E-12 93.1 -3.4 177 303-481 186-373 (419)
46 COG5238 RNA1 Ran GTPase-activa 98.1 1.2E-06 2.7E-11 84.1 3.0 240 31-291 25-316 (388)
47 KOG1859 Leucine-rich repeat pr 98.1 1E-07 2.2E-12 103.2 -5.2 128 253-388 164-292 (1096)
48 KOG1859 Leucine-rich repeat pr 98.1 1.2E-07 2.6E-12 102.6 -4.9 196 252-460 83-292 (1096)
49 KOG4579 Leucine-rich repeat (L 98.1 9.5E-07 2.1E-11 76.1 0.4 131 183-343 29-162 (177)
50 COG5238 RNA1 Ran GTPase-activa 98.0 1.2E-06 2.6E-11 84.2 0.4 25 201-225 27-51 (388)
51 KOG2982 Uncharacterized conser 98.0 1E-06 2.2E-11 85.9 -0.2 85 82-166 70-156 (418)
52 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 56.5 3.0 36 660-696 2-37 (44)
53 KOG2982 Uncharacterized conser 97.9 8.7E-06 1.9E-10 79.5 3.4 64 277-340 198-262 (418)
54 PF12799 LRR_4: Leucine Rich r 97.8 1.3E-05 2.9E-10 56.0 2.9 36 637-673 3-38 (44)
55 KOG3665 ZYG-1-like serine/thre 97.8 7.1E-06 1.5E-10 93.9 1.0 159 58-236 122-282 (699)
56 PF13306 LRR_5: Leucine rich r 97.7 0.00011 2.5E-09 66.0 7.1 126 26-159 2-129 (129)
57 KOG1644 U2-associated snRNP A' 97.6 0.00011 2.3E-09 68.3 5.8 103 39-144 22-126 (233)
58 PRK15386 type III secretion pr 97.6 0.00023 5E-09 75.1 8.7 74 445-531 50-124 (426)
59 KOG1644 U2-associated snRNP A' 97.6 0.00013 2.9E-09 67.6 6.0 108 56-167 17-124 (233)
60 KOG4341 F-box protein containi 97.4 6.2E-06 1.3E-10 84.4 -4.8 298 84-382 139-459 (483)
61 KOG4341 F-box protein containi 97.4 8.5E-06 1.8E-10 83.4 -3.9 282 107-411 138-437 (483)
62 PRK15386 type III secretion pr 97.4 0.00071 1.5E-08 71.5 9.3 35 103-141 48-82 (426)
63 KOG3665 ZYG-1-like serine/thre 97.4 0.00011 2.4E-09 84.3 3.6 84 57-142 147-231 (699)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00024 5.2E-09 63.9 4.9 62 222-286 5-66 (129)
65 KOG2123 Uncharacterized conser 96.7 5.7E-05 1.2E-09 73.3 -5.5 100 35-137 18-123 (388)
66 KOG2739 Leucine-rich acidic nu 96.7 0.001 2.2E-08 64.8 2.6 63 33-96 40-104 (260)
67 KOG2123 Uncharacterized conser 96.5 0.0001 2.3E-09 71.5 -5.2 99 13-113 20-123 (388)
68 KOG2739 Leucine-rich acidic nu 96.5 0.00089 1.9E-08 65.1 1.0 61 57-120 42-104 (260)
69 PF00560 LRR_1: Leucine Rich R 96.3 0.0015 3.2E-08 37.9 0.8 20 661-681 2-21 (22)
70 KOG1947 Leucine rich repeat pr 95.5 0.0056 1.2E-07 69.0 1.4 114 56-169 186-308 (482)
71 PF00560 LRR_1: Leucine Rich R 95.3 0.0076 1.6E-07 34.9 1.0 20 637-657 2-21 (22)
72 KOG1947 Leucine rich repeat pr 95.2 0.0034 7.3E-08 70.8 -1.6 35 473-507 403-439 (482)
73 KOG0473 Leucine-rich repeat pr 92.4 0.0021 4.6E-08 61.0 -8.2 102 16-120 22-124 (326)
74 KOG0473 Leucine-rich repeat pr 92.0 0.011 2.5E-07 56.3 -4.0 83 611-696 41-124 (326)
75 KOG4308 LRR-containing protein 91.6 0.0046 9.9E-08 68.1 -8.2 65 420-484 111-185 (478)
76 PF13504 LRR_7: Leucine rich r 91.4 0.12 2.5E-06 27.7 1.2 13 660-672 2-14 (17)
77 KOG4308 LRR-containing protein 91.2 0.0066 1.4E-07 66.8 -7.5 44 653-696 398-445 (478)
78 smart00369 LRR_TYP Leucine-ric 91.2 0.15 3.3E-06 30.8 1.8 21 658-678 1-21 (26)
79 smart00370 LRR Leucine-rich re 91.2 0.15 3.3E-06 30.8 1.8 21 658-678 1-21 (26)
80 PF13516 LRR_6: Leucine Rich r 90.0 0.069 1.5E-06 31.6 -0.5 22 658-679 1-22 (24)
81 smart00369 LRR_TYP Leucine-ric 87.6 0.57 1.2E-05 28.2 2.4 16 107-122 2-17 (26)
82 smart00370 LRR Leucine-rich re 87.6 0.57 1.2E-05 28.2 2.4 16 107-122 2-17 (26)
83 PF13516 LRR_6: Leucine Rich r 84.4 0.32 7E-06 28.7 0.1 16 471-486 2-17 (24)
84 smart00365 LRR_SD22 Leucine-ri 80.8 1.6 3.4E-05 26.4 2.1 17 36-52 2-18 (26)
85 smart00365 LRR_SD22 Leucine-ri 80.4 1.4 3E-05 26.7 1.8 15 658-672 1-15 (26)
86 KOG3864 Uncharacterized conser 72.0 0.79 1.7E-05 43.3 -1.2 37 106-142 100-136 (221)
87 KOG3864 Uncharacterized conser 71.8 0.98 2.1E-05 42.7 -0.7 34 471-504 151-185 (221)
88 smart00368 LRR_RI Leucine rich 69.5 3.6 7.8E-05 25.3 1.7 14 659-672 2-15 (28)
89 smart00364 LRR_BAC Leucine-ric 65.2 4.3 9.3E-05 24.5 1.3 13 660-672 3-15 (26)
90 PF02439 Adeno_E3_CR2: Adenovi 61.6 13 0.00027 24.7 3.1 18 755-772 8-25 (38)
91 PF07204 Orthoreo_P10: Orthore 61.6 5.3 0.00011 32.2 1.6 31 751-781 39-69 (98)
92 TIGR00864 PCC polycystin catio 60.5 4.6 0.0001 52.9 1.8 36 665-700 1-36 (2740)
93 KOG4242 Predicted myosin-I-bin 56.2 54 0.0012 35.6 8.4 108 425-532 355-481 (553)
94 PF15102 TMEM154: TMEM154 prot 52.9 7.5 0.00016 34.7 1.4 23 761-783 66-88 (146)
95 KOG4242 Predicted myosin-I-bin 49.0 82 0.0018 34.3 8.4 58 614-671 415-480 (553)
96 KOG3763 mRNA export factor TAP 46.6 17 0.00037 40.0 3.1 13 227-239 242-254 (585)
97 PF11980 DUF3481: Domain of un 43.1 21 0.00046 28.2 2.3 32 750-781 12-44 (87)
98 PF01299 Lamp: Lysosome-associ 40.5 23 0.0005 36.9 3.0 28 758-785 276-303 (306)
99 PRK14762 membrane protein; Pro 38.9 45 0.00098 19.6 2.6 20 755-774 4-23 (27)
100 PF15179 Myc_target_1: Myc tar 34.4 34 0.00074 31.6 2.6 28 751-778 21-48 (197)
101 KOG3763 mRNA export factor TAP 33.9 22 0.00048 39.2 1.5 62 179-242 216-283 (585)
102 PF08374 Protocadherin: Protoc 29.5 34 0.00073 32.8 1.8 25 752-776 36-60 (221)
103 PRK00523 hypothetical protein; 28.8 37 0.0008 26.3 1.6 22 764-785 13-34 (72)
104 smart00367 LRR_CC Leucine-rich 27.5 46 0.00099 19.8 1.6 13 57-69 1-13 (26)
105 PF06716 DUF1201: Protein of u 27.4 45 0.00097 22.9 1.6 20 756-775 8-27 (54)
106 PF14575 EphA2_TM: Ephrin type 25.5 69 0.0015 25.3 2.6 6 760-765 7-12 (75)
107 PRK01844 hypothetical protein; 22.5 55 0.0012 25.4 1.5 18 768-785 16-33 (72)
108 TIGR00864 PCC polycystin catio 21.7 52 0.0011 44.0 2.0 31 618-648 1-32 (2740)
109 PF15050 SCIMP: SCIMP protein 20.8 1E+02 0.0022 26.4 2.8 8 754-761 9-16 (133)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-65 Score=622.33 Aligned_cols=540 Identities=36% Similarity=0.541 Sum_probs=478.5
Q ss_pred CCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhc-CCCCCCEEeCcCCcCccccchhhhhCCCCCcE
Q 036932 82 LKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAIT-TLTSLEYLALLDNNFEGTFLLNSLANHSKLEV 160 (790)
Q Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~ 160 (790)
..+++.|+|++|.+.+.++..|..+++|++|+|++|++++.+|..+. .+++|++|++++|.+++.+|. ..+++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~--- 141 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPN--- 141 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCC---
Confidence 34677888888888777777788888888888888888776766543 778888888888877766553 23344
Q ss_pred EEccCCCCCcccccCCCCCCccceEEeCCCCCC-CCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCC
Q 036932 161 LLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNL-KVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNN 239 (790)
Q Consensus 161 L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n 239 (790)
|++|++++|.+ +.+|..+..+++|++|++++|.+.+.+|..+ .++++|++|++++|
T Consensus 142 ----------------------L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n 198 (968)
T PLN00113 142 ----------------------LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASN 198 (968)
T ss_pred ----------------------CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCC
Confidence 45555555556 4677778888888888888888887888765 47888888888888
Q ss_pred cccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccC
Q 036932 240 SFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELP 319 (790)
Q Consensus 240 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~ 319 (790)
.+.+..+..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 88877666677888999999999999888888875 58999999999999999999999999999999999999988888
Q ss_pred hhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhcc
Q 036932 320 APLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFS 399 (790)
Q Consensus 320 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~ 399 (790)
..+ ..+++|++|++++|.+.+.+|..+.++++|++|++++|.+++..|..+..+++|+.|++++|.+.+.+|..++.+.
T Consensus 278 ~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~ 356 (968)
T PLN00113 278 PSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356 (968)
T ss_pred hhH-hhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC
Confidence 765 5789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEec
Q 036932 400 SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDL 478 (790)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L 478 (790)
. |+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+ .+++|+.|++++|++++.+|..+..++.|+.|++
T Consensus 357 ~-L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 435 (968)
T PLN00113 357 N-LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435 (968)
T ss_pred C-CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEEC
Confidence 8 9999999999999999999999999999999999999999888 8999999999999999999999999999999999
Q ss_pred cCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccc
Q 036932 479 RDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQ 558 (790)
Q Consensus 479 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~ 558 (790)
++|++++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.||+++|++++.+|..+..
T Consensus 436 s~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~----------------- 497 (968)
T PLN00113 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS----------------- 497 (968)
T ss_pred cCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh-----------------
Confidence 9999999999999999999999999999999988876 4689999999999999998876643
Q ss_pred cccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-e
Q 036932 559 FFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-I 637 (790)
Q Consensus 559 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L 637 (790)
++.|+.|+|++|+++|.+|..++.+. |
T Consensus 498 ----------------------------------------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 525 (968)
T PLN00113 498 ----------------------------------------------------LSELMQLKLSENKLSGEIPDELSSCKKL 525 (968)
T ss_pred ----------------------------------------------------hhccCEEECcCCcceeeCChHHcCccCC
Confidence 45789999999999999999999998 9
Q ss_pred cceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCc
Q 036932 638 RGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNL 717 (790)
Q Consensus 638 ~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~ 717 (790)
++|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|++||+++|+++|.+|..++|.++...++.||+
T Consensus 526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNI 605 (968)
T ss_pred CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 036932 718 HLCGPT 723 (790)
Q Consensus 718 ~lcg~~ 723 (790)
++||.+
T Consensus 606 ~lc~~~ 611 (968)
T PLN00113 606 DLCGGD 611 (968)
T ss_pred cccCCc
Confidence 999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.5e-59 Score=568.56 Aligned_cols=533 Identities=34% Similarity=0.504 Sum_probs=385.6
Q ss_pred CCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccC-CCCCCcEEEccCCCCCCCChhhhcCCCCCCEEe
Q 036932 59 NLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLK-NLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA 137 (790)
Q Consensus 59 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 137 (790)
+++.|+|++|.+.+..+ ..+..+++|++|+|++|++.+.+|..+. ++++|++|+|++|++++.+|. +.+++|++|+
T Consensus 70 ~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 70 RVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred cEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 44444555444443332 2344445555555555554444443322 455555555555555444442 2344555555
Q ss_pred CcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCC
Q 036932 138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLV 217 (790)
Q Consensus 138 Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 217 (790)
+++|.+++.+| ..+.++++|++|++++|... +.+|..+.++++|++|++++|.++
T Consensus 147 Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~l~------------------------~~~p~~~~~l~~L~~L~L~~n~l~ 201 (968)
T PLN00113 147 LSNNMLSGEIP-NDIGSFSSLKVLDLGGNVLV------------------------GKIPNSLTNLTSLEFLTLASNQLV 201 (968)
T ss_pred CcCCcccccCC-hHHhcCCCCCEEECccCccc------------------------ccCChhhhhCcCCCeeeccCCCCc
Confidence 55555544333 22344444444444333211 123333444444445555555444
Q ss_pred CcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchh
Q 036932 218 GDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSS 297 (790)
Q Consensus 218 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 297 (790)
+.+|..+ .++++|++|++++|.+++..+..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..
T Consensus 202 ~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~ 279 (968)
T PLN00113 202 GQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPS 279 (968)
T ss_pred CcCChHH-cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchh
Confidence 4444433 2445555555555555444333444556666666666666666676654 4777788888887777777777
Q ss_pred hhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCC
Q 036932 298 IGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNEL 377 (790)
Q Consensus 298 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 377 (790)
+.++++|++|++++|.+.+.+|.. +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|
T Consensus 280 l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L 358 (968)
T PLN00113 280 IFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358 (968)
T ss_pred HhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCC
Confidence 777888888888888877666654 3577888888888888887777778888888888888888888888888888888
Q ss_pred cEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccC
Q 036932 378 NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQM 456 (790)
Q Consensus 378 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~ 456 (790)
+.|++++|++.+.+|.+++.... ++.|++++|.+.+.+|..+..+++|+.|++++|.+++..|..+ .++.|+.|++++
T Consensus 359 ~~L~Ls~n~l~~~~p~~~~~~~~-L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~ 437 (968)
T PLN00113 359 TVLDLSTNNLTGEIPEGLCSSGN-LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN 437 (968)
T ss_pred cEEECCCCeeEeeCChhHhCcCC-CCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence 88888888888888888888777 8888888888888888888889999999999999998888877 889999999999
Q ss_pred CcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932 457 NSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536 (790)
Q Consensus 457 n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p 536 (790)
|.+++.+|..+..+++|+.|++++|++.+.+|..+. .++|+.|++++|++++.+|..+..+++|+.|++++|++.|.+|
T Consensus 438 N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 438 NNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred CcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCC
Confidence 999998898888999999999999999988887664 5889999999999999999999999999999999999999998
Q ss_pred hhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceE
Q 036932 537 SCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVG 616 (790)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 616 (790)
..+.. ++.|+.
T Consensus 517 ~~~~~---------------------------------------------------------------------l~~L~~ 527 (968)
T PLN00113 517 DELSS---------------------------------------------------------------------CKKLVS 527 (968)
T ss_pred hHHcC---------------------------------------------------------------------ccCCCE
Confidence 76532 568999
Q ss_pred EECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCc
Q 036932 617 LDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNN 694 (790)
Q Consensus 617 L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~ 694 (790)
|+|++|.++|.+|..++.+. |+.|||++|+++|.+|..++++++|+.||+++|+++|.+|.. +....+....+.+|+
T Consensus 528 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 528 LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred EECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCc
Confidence 99999999999999999987 999999999999999999999999999999999999999975 334445555666776
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.4e-42 Score=340.21 Aligned_cols=498 Identities=27% Similarity=0.360 Sum_probs=320.1
Q ss_pred ccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCC
Q 036932 78 GVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSK 157 (790)
Q Consensus 78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 157 (790)
.++.-..|+.+++++|.+.. +.+.+.++..|.+|++++|++. ..|++++.+..++.++.++|++. .+|. .+..+.+
T Consensus 40 ~wW~qv~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~ 115 (565)
T KOG0472|consen 40 NWWEQVDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLIS 115 (565)
T ss_pred hhhhhcchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhh
Confidence 34444566677777777663 3344667777777777777776 55666777777777777777765 4443 2333333
Q ss_pred CcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEecc
Q 036932 158 LEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLT 237 (790)
Q Consensus 158 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~ 237 (790)
+ ..++++.|.+.++|+.++.+..++.++..+|+++ +.|..++ .+.++..+++.
T Consensus 116 l-------------------------~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~-~~~~l~~l~~~ 168 (565)
T KOG0472|consen 116 L-------------------------VKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMV-NLSKLSKLDLE 168 (565)
T ss_pred h-------------------------hhhhccccceeecCchHHHHhhhhhhhccccccc-cCchHHH-HHHHHHHhhcc
Confidence 3 3334444445555666666666666666666666 5555544 45555555555
Q ss_pred CCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccc
Q 036932 238 NNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGE 317 (790)
Q Consensus 238 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 317 (790)
+|.+....+... .++.|++||...|.+. .+|..++. +.+|+.|++..|++. ..| .|.++..|++++++.|++. .
T Consensus 169 ~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~ 242 (565)
T KOG0472|consen 169 GNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-M 242 (565)
T ss_pred ccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-h
Confidence 555543321111 2444555555555554 66666653 666666777777666 455 5666666777777777666 6
Q ss_pred cChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhh
Q 036932 318 LPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGN 397 (790)
Q Consensus 318 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 397 (790)
+|....+.++++.+||+.+|+++ ..|+.+.-+.+|+.||+++|.++ .+|..++++ .|+.|.+.+|++. .+-..+-+
T Consensus 243 lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~ 318 (565)
T KOG0472|consen 243 LPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIIS 318 (565)
T ss_pred hHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHc
Confidence 66666666666666666666665 34555556666666666666666 345556666 5666666666654 22221111
Q ss_pred ccC--CCeEEEccCccccccchhhhccCCCCCEEecCC-ccccCcccccccccccceeeccCCcCccccchhhcCCCC--
Q 036932 398 FSS--DLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSE-NCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSN-- 472 (790)
Q Consensus 398 ~~~--~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~-- 472 (790)
... -|++|.- .++.. .+.+- +.=.-+. ....+..|....+.+.+.|++++-+++ .+|...+....
T Consensus 319 ~gT~~vLKyLrs---~~~~d---glS~s---e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~ 388 (565)
T KOG0472|consen 319 KGTQEVLKYLRS---KIKDD---GLSQS---EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSE 388 (565)
T ss_pred ccHHHHHHHHHH---hhccC---CCCCC---cccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhc
Confidence 110 0111100 00000 00000 0000000 001112222225668889999999998 66766655544
Q ss_pred -CcEEeccCCcccccCchhhhcCccccE-EeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccc
Q 036932 473 -LITLDLRDNRFSGVIPHQISESLTLRF-LLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNV 550 (790)
Q Consensus 473 -L~~L~L~~N~l~~~~p~~~~~l~~L~~-L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~ 550 (790)
...++++.|++. ++|..+..+..+.+ +.+++|.+ +-+|..++.+++|..|+|++|.+. .+|..++.
T Consensus 389 ~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~--------- 456 (565)
T KOG0472|consen 389 IVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS--------- 456 (565)
T ss_pred ceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhh---------
Confidence 889999999998 78888888877665 45555555 488999999999999999999987 88877654
Q ss_pred cCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCCh
Q 036932 551 YLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPS 630 (790)
Q Consensus 551 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~ 630 (790)
+..|+.||+|.|+|. .+|+
T Consensus 457 ------------------------------------------------------------lv~Lq~LnlS~NrFr-~lP~ 475 (565)
T KOG0472|consen 457 ------------------------------------------------------------LVRLQTLNLSFNRFR-MLPE 475 (565)
T ss_pred ------------------------------------------------------------hhhhheecccccccc-cchH
Confidence 335899999999998 8999
Q ss_pred hhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCC
Q 036932 631 EIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK 702 (790)
Q Consensus 631 ~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 702 (790)
++-.+. ++.+-.++|++...-|+.+++|.+|..|||.+|.|. .||..+++|++|+.|++++|++. .|..
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence 988887 777777779999777777999999999999999998 89999999999999999999998 5644
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=7.8e-41 Score=329.63 Aligned_cols=488 Identities=25% Similarity=0.314 Sum_probs=372.5
Q ss_pred ChhhhcCCCCCCEEEcCCCCCC-ccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCC
Q 036932 28 IVVGFANLTNLKILDLSGCGIT-TLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNL 106 (790)
Q Consensus 28 ~~~~~~~l~~L~~L~Ls~n~i~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 106 (790)
-......-..|..|++++|.+. ..+.+.++..|.+|++.+|++...++ ++..+..++.++.+.|.++ .+|+.++.+
T Consensus 37 e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~--aig~l~~l~~l~vs~n~ls-~lp~~i~s~ 113 (565)
T KOG0472|consen 37 EGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPA--AIGELEALKSLNVSHNKLS-ELPEQIGSL 113 (565)
T ss_pred chhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCH--HHHHHHHHHHhhcccchHh-hccHHHhhh
Confidence 3344555566777777777777 33467777777788887777765543 5677777777777777777 567777777
Q ss_pred CCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEE
Q 036932 107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVL 186 (790)
Q Consensus 107 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L 186 (790)
.+|+.++.++|.+. ..|+.++.+..|+.++..+|+++ ..| ..+.++.++..+++.+|...... ++...+..|+++
T Consensus 114 ~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp-~~~~~~~~l~~l~~~~n~l~~l~--~~~i~m~~L~~l 188 (565)
T KOG0472|consen 114 ISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLP-EDMVNLSKLSKLDLEGNKLKALP--ENHIAMKRLKHL 188 (565)
T ss_pred hhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCc-hHHHHHHHHHHhhccccchhhCC--HHHHHHHHHHhc
Confidence 88888888888777 56667777777888888777776 444 34667777777777776643222 123346788888
Q ss_pred eCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCC
Q 036932 187 GLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLT 266 (790)
Q Consensus 187 ~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 266 (790)
++..|-++.+|..++.+.+|.-|+|..|.+. .+|+ |.+|..|++++++.|++.-........++++.+||+.+|++.
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc
Confidence 8888889999999999999999999999998 7885 558899999999999988665444558889999999999999
Q ss_pred ccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCc--CcEE-------EccCC
Q 036932 267 GKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCIS--LGLL-------DLSGN 337 (790)
Q Consensus 267 ~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~--L~~L-------~L~~n 337 (790)
+.|..++. +.+|++||+|+|.++ ..|.+++++ .|+.|.+.+|.+. ++-.++..+=+. |++| .++..
T Consensus 266 -e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 266 -EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred -cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 89999875 889999999999999 688899999 9999999999887 555444321110 1111 11111
Q ss_pred cC--------cccccccccCCCCCcEEEcCCcccccccccccCCCC---CCcEEEcccccCcCCCchhhhhccCCCeEEE
Q 036932 338 NF--------YGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSN---ELNELDISNNLLSGHIPHWIGNFSSDLKVLL 406 (790)
Q Consensus 338 ~l--------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~ 406 (790)
.= ..........+.+.++|++++-+++ .+|+.+.... -.+..+++.|++. ++|..+..+....+.+.
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~ 418 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLV 418 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHH
Confidence 00 0011112234567889999998888 4555443333 3889999999998 88988887777333444
Q ss_pred ccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCccccc
Q 036932 407 MSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGV 486 (790)
Q Consensus 407 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~ 486 (790)
+++| ..+.+|..++.+++|..|++++|.+...+.+.+.+..|+.|+++.|+|. .+|..+.....++.+-.++|++...
T Consensus 419 lsnn-~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v 496 (565)
T KOG0472|consen 419 LSNN-KISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV 496 (565)
T ss_pred hhcC-ccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence 5544 4568999999999999999999998876666668888999999999998 8899999989999999999999987
Q ss_pred CchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChh
Q 036932 487 IPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSC 538 (790)
Q Consensus 487 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~ 538 (790)
.|..+.++.+|..|||.+|.+. .+|..++++++|+.|++.+|+|. .|..
T Consensus 497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence 7777999999999999999998 88999999999999999999998 5543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-38 Score=322.22 Aligned_cols=384 Identities=23% Similarity=0.250 Sum_probs=258.1
Q ss_pred cEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcc
Q 036932 232 EALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPK 311 (790)
Q Consensus 232 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~ 311 (790)
+.|++++|.+..+....+.++++|+++++.+|.++ .+|.... ...+|+.|+|.+|.|+..-...+..++.|+.|||+.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~-~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH-ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc-cccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 34555555555443333445555555555555555 4554332 233455555555555544444455555555555555
Q ss_pred cccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCC
Q 036932 312 NNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI 391 (790)
Q Consensus 312 n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 391 (790)
|.++ ++|...|..-.++++|+|++|.|+......|..+.+|.+|.|+.|+++...+..|..+++
T Consensus 159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~--------------- 222 (873)
T KOG4194|consen 159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPK--------------- 222 (873)
T ss_pred chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcch---------------
Confidence 5554 444444433344555555555554444444444444444444444444444444444444
Q ss_pred chhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCC
Q 036932 392 PHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRS 470 (790)
Q Consensus 392 p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~ 470 (790)
|+.|++..|++.-.--..|.++++|+.|.+..|.++......| .+.++++|+|..|+++..-..++.++
T Consensus 223 ----------L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL 292 (873)
T KOG4194|consen 223 ----------LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL 292 (873)
T ss_pred ----------hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc
Confidence 5555555554443334456677788888888888888777777 88888999999998887777788888
Q ss_pred CCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccc
Q 036932 471 SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNV 550 (790)
Q Consensus 471 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~ 550 (790)
+.|+.|++|+|.|...-++.++-+++|++|+|++|+++...+..|..++.|++|+|++|+++ .+...
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~------------ 359 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEG------------ 359 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-HHHhh------------
Confidence 99999999999988888888888889999999999998888888888999999999999886 11110
Q ss_pred cCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCCh
Q 036932 551 YLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPS 630 (790)
Q Consensus 551 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~ 630 (790)
.| ..+++|+.|||++|.+++.|-+
T Consensus 360 ----------------------------------af----------------------~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 360 ----------------------------------AF----------------------VGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred ----------------------------------HH----------------------HHhhhhhhhcCcCCeEEEEEec
Confidence 11 1256888899999998877765
Q ss_pred hh---hhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCC
Q 036932 631 EI---GDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFA 706 (790)
Q Consensus 631 ~~---~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~ 706 (790)
.- ..+. |+.|+|.+|+|......+|.++..||.|||.+|.|-.+-|.+|..| .|+.|-+..-.+-|.+ |+.
T Consensus 384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC----ql~ 458 (873)
T KOG4194|consen 384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC----QLK 458 (873)
T ss_pred chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec----cHH
Confidence 43 3343 8999999999996666899999999999999999999999999999 8999998887777766 455
Q ss_pred CcCcccccCCc
Q 036932 707 TFDESSYRGNL 717 (790)
Q Consensus 707 ~~~~~~~~gn~ 717 (790)
++..+-+..++
T Consensus 459 Wl~qWl~~~~l 469 (873)
T KOG4194|consen 459 WLAQWLYRRKL 469 (873)
T ss_pred HHHHHHHhccc
Confidence 55554444443
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-37 Score=317.32 Aligned_cols=364 Identities=25% Similarity=0.232 Sum_probs=242.1
Q ss_pred CCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEe
Q 036932 108 HLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLG 187 (790)
Q Consensus 108 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~ 187 (790)
.-++||+++|++..+.+..|.++++|+.+++..|.++ .+|. +.. ...+++.|+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~--f~~------------------------~sghl~~L~ 131 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR--FGH------------------------ESGHLEKLD 131 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc--ccc------------------------cccceeEEe
Confidence 3456888888888777777888888888888877776 4542 111 112344555
Q ss_pred CCCCCCCCcc-hhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCC
Q 036932 188 LPNYNLKVIP-SFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLT 266 (790)
Q Consensus 188 l~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 266 (790)
|.+|.|..+. +.+..++.|+.||||.|.++ .+|..-|..-.++++|+|+.|.++......|..+.+|.+|.|+.|+++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT 210 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc
Confidence 5555554433 35666778888888888887 777655555567888888888888777677777778888888888888
Q ss_pred ccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCccccccc
Q 036932 267 GKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPK 346 (790)
Q Consensus 267 ~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 346 (790)
.+|...|+.+++|+.|+|..|+|.-.---.|.++++|+.|.|..|.+. .+.++.|-++.++++|+|+.|++...-..+
T Consensus 211 -tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 211 -TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred -ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhccc
Confidence 888888877888888888888877433556777888888888888777 777777777778888888888777666667
Q ss_pred ccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCC
Q 036932 347 YMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSL 426 (790)
Q Consensus 347 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 426 (790)
+.++++|+.|++++|.|..+-++.+..+++|+.|+|++|+++...+..|..+.. |+.|.+++|.+...-...|..+++|
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~-Le~LnLs~Nsi~~l~e~af~~lssL 367 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ-LEELNLSHNSIDHLAEGAFVGLSSL 367 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH-hhhhcccccchHHHHhhHHHHhhhh
Confidence 777777777777777777777777777777777777777777555556665555 6666666666654444455555555
Q ss_pred CEEecCCccccCccccc---c-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEec
Q 036932 427 NLLSVSENCLSGPMTSS---F-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLL 502 (790)
Q Consensus 427 ~~L~l~~n~l~~~~~~~---~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 502 (790)
+.|||++|.+++.+.+. | .+++|+.|++.+|++..+...+|.++.+|+.|||.+|.|..+-|.+|..+ .|++|.+
T Consensus 368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 55555555555444332 1 44555555555555553333445555555555555555554555555544 4444444
Q ss_pred c
Q 036932 503 R 503 (790)
Q Consensus 503 ~ 503 (790)
.
T Consensus 447 n 447 (873)
T KOG4194|consen 447 N 447 (873)
T ss_pred c
Confidence 3
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=8.5e-36 Score=323.14 Aligned_cols=475 Identities=27% Similarity=0.301 Sum_probs=336.2
Q ss_pred CceeeeChhhhcCCCCCCEEEcCCCCCCc--cccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccC
Q 036932 22 SNILFFIVVGFANLTNLKILDLSGCGITT--LQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHL 99 (790)
Q Consensus 22 ~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 99 (790)
++...|+..-+-+ ..+..|++..|.+.. ++...+..+|+.||+++|.+...+ ..++.+.+|+.|.++.|.|. ..
T Consensus 8 ~~l~~ip~~i~~~-~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp--~~it~l~~L~~ln~s~n~i~-~v 83 (1081)
T KOG0618|consen 8 EQLELIPEQILNN-EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFP--IQITLLSHLRQLNLSRNYIR-SV 83 (1081)
T ss_pred ccCcccchhhccH-HHHHhhhccccccccCchHHhhheeeeEEeeccccccccCC--chhhhHHHHhhcccchhhHh-hC
Confidence 3444444433333 337777777775543 334555556777777777776443 35667777777777777776 45
Q ss_pred CcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCC
Q 036932 100 PDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLP 179 (790)
Q Consensus 100 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~ 179 (790)
|.+..++.+|+++.|.+|.+. ..|..+..+.+|++|+++.|.+. .+| ..+..++.++.+..++|..+.....
T Consensus 84 p~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~P-l~i~~lt~~~~~~~s~N~~~~~lg~----- 155 (1081)
T KOG0618|consen 84 PSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIP-LVIEVLTAEEELAASNNEKIQRLGQ----- 155 (1081)
T ss_pred chhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCc-hhHHhhhHHHHHhhhcchhhhhhcc-----
Confidence 566777777777777777776 66777777777777777777775 455 3566666677777776632221111
Q ss_pred CccceEEeCCCCCC-CCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEE
Q 036932 180 TFQLKVLGLPNYNL-KVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHL 258 (790)
Q Consensus 180 ~~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 258 (790)
..++.+++..+.+ +.++..+..+.. .|||++|.+. ... ...+.+|+.+....|++.... ..-++++.|
T Consensus 156 -~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L 224 (1081)
T KOG0618|consen 156 -TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELE----ISGPSLTAL 224 (1081)
T ss_pred -ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEE----ecCcchhee
Confidence 1266667777766 556666655555 6888888775 222 336778888888888776532 244678888
Q ss_pred EeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCc
Q 036932 259 DVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNN 338 (790)
Q Consensus 259 ~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 338 (790)
+.++|.+. .+.... ...+|++++++.|+++ .+|.+++.+.+|+.++..+|.+. .+|..++ ..++|+.|.+..|.
T Consensus 225 ~a~~n~l~-~~~~~p--~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 225 YADHNPLT-TLDVHP--VPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNE 298 (1081)
T ss_pred eeccCcce-eecccc--ccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhh
Confidence 88888887 322222 2568888888888888 56788888888888888888886 8887765 57788888888888
Q ss_pred CcccccccccCCCCCcEEEcCCcccccccccccCCCCC-CcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccch
Q 036932 339 FYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNE-LNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIP 417 (790)
Q Consensus 339 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~ 417 (790)
+. -+|+....+++|++|+|..|++....+..+..... ++.|..+.|++. ..|..=......|+.|.+.+|.++...-
T Consensus 299 l~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~ 376 (1081)
T KOG0618|consen 299 LE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCF 376 (1081)
T ss_pred hh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccch
Confidence 86 35556667888899999998887444434443333 777888888876 4443222222338888999999998888
Q ss_pred hhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCcc
Q 036932 418 AQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLT 496 (790)
Q Consensus 418 ~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~ 496 (790)
+.+.++++|+.|+|++|.+...+...+ +++.|+.|+|++|+++ .+|..+..+..|++|...+|++. ..| .+..++.
T Consensus 377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~q 453 (1081)
T KOG0618|consen 377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQ 453 (1081)
T ss_pred hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCc
Confidence 888889999999999999886666666 8899999999999998 78889999999999999999998 667 7888899
Q ss_pred ccEEeccCccccccCCccccCCCCCCEEEccCCc
Q 036932 497 LRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNR 530 (790)
Q Consensus 497 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~ 530 (790)
|+.+|++.|+++...-.....-++|++||+++|.
T Consensus 454 L~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 454 LKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 9999999999875432222223889999999997
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-35 Score=320.08 Aligned_cols=441 Identities=29% Similarity=0.333 Sum_probs=259.0
Q ss_pred CCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceE
Q 036932 106 LSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKV 185 (790)
Q Consensus 106 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~ 185 (790)
..+|+.||+++|++. ..|..+..+.+|+.|+++.|.+. ..| ....++.+ |++
T Consensus 44 ~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp-~s~~~~~~-------------------------l~~ 95 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVP-SSCSNMRN-------------------------LQY 95 (1081)
T ss_pred eeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCc-hhhhhhhc-------------------------chh
Confidence 334555555555554 44555555555555555555554 222 12222222 233
Q ss_pred EeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCC
Q 036932 186 LGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNL 265 (790)
Q Consensus 186 L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 265 (790)
+.|.+|.+..+|..+..+.+|+.|+++.|.+. .+|..+. .++.++.+..++|.... .++. ..++.+++..|.+
T Consensus 96 lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~-~lt~~~~~~~s~N~~~~----~lg~-~~ik~~~l~~n~l 168 (1081)
T KOG0618|consen 96 LNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIE-VLTAEEELAASNNEKIQ----RLGQ-TSIKKLDLRLNVL 168 (1081)
T ss_pred heeccchhhcCchhHHhhhcccccccchhccC-CCchhHH-hhhHHHHHhhhcchhhh----hhcc-ccchhhhhhhhhc
Confidence 33333444555666666667777777777776 6665543 55555666666551110 0001 1144445555544
Q ss_pred CccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccc
Q 036932 266 TGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFP 345 (790)
Q Consensus 266 ~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 345 (790)
.+.++.++.. ++. .|++++|.+. -..+. .+.+|+.+....|+++....
T Consensus 169 ~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls-------------------------~~~~l~~l~c~rn~ls~l~~- 216 (1081)
T KOG0618|consen 169 GGSFLIDIYN-LTH--QLDLRYNEME---VLDLS-------------------------NLANLEVLHCERNQLSELEI- 216 (1081)
T ss_pred ccchhcchhh-hhe--eeecccchhh---hhhhh-------------------------hccchhhhhhhhcccceEEe-
Confidence 4444444321 222 3555555443 11223 33444444444444432211
Q ss_pred cccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCC
Q 036932 346 KYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGS 425 (790)
Q Consensus 346 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 425 (790)
.-++|+.|+.++|.++...+. ....+|++++++.|+++ .+|.|++.+.. ++.+...+|+++ .+|..+....+
T Consensus 217 ---~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~n-le~l~~n~N~l~-~lp~ri~~~~~ 288 (1081)
T KOG0618|consen 217 ---SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACAN-LEALNANHNRLV-ALPLRISRITS 288 (1081)
T ss_pred ---cCcchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhccc-ceEecccchhHH-hhHHHHhhhhh
Confidence 224555666666655522221 12345677777777776 55677777766 777777777773 66777777777
Q ss_pred CCEEecCCccccCcccccccccccceeeccCCcCccccchhhcC-CC-CCcEEeccCCcccccCchhhhcCccccEEecc
Q 036932 426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFR-SS-NLITLDLRDNRFSGVIPHQISESLTLRFLLLR 503 (790)
Q Consensus 426 L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-~~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 503 (790)
|+.|.+.+|.+.-..+..-..+.|++|+|..|++. ..|+.+.. .. .|+.++.+.|++....-..=...+.|+.|.+.
T Consensus 289 L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla 367 (1081)
T KOG0618|consen 289 LVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA 367 (1081)
T ss_pred HHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh
Confidence 77777777777755544446777788888888776 45554432 22 36777777777764321112345678888888
Q ss_pred CccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCC
Q 036932 504 GNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGN 583 (790)
Q Consensus 504 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 583 (790)
+|.+++..-..+.+.++|++|+|++|++. .+|+...
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~------------------------------------------- 403 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKL------------------------------------------- 403 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccc-cCCHHHH-------------------------------------------
Confidence 88888777677777888888888888876 6665321
Q ss_pred CcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCC
Q 036932 584 GVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIE 662 (790)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~ 662 (790)
..+..|+.|+||+|+|+ .+|.++..+. |++|...+|++. ..| ++..+++|+
T Consensus 404 -------------------------~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 404 -------------------------RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLK 455 (1081)
T ss_pred -------------------------hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcce
Confidence 12456778888888887 7888887776 888888888887 566 778888888
Q ss_pred EEEccCCcccccCCccccCCCCCCeEecccCc
Q 036932 663 SLDLSHNRLSGQVPPRLTELNFLSNFNVSFNN 694 (790)
Q Consensus 663 ~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~ 694 (790)
.+|+|.|+|+-..-..-..-+.|++|||++|.
T Consensus 456 ~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred EEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 88888888874433222233778888888886
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=7e-34 Score=294.22 Aligned_cols=360 Identities=24% Similarity=0.373 Sum_probs=269.5
Q ss_pred CCCCEEEeecCCCC-ccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcE
Q 036932 253 DFLHHLDVSNNNLT-GKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGL 331 (790)
Q Consensus 253 ~~L~~L~Ls~n~l~-~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~ 331 (790)
+-.+-.|+++|.++ +.+|..+-. ++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+...+ +.++.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHH
Confidence 44556677777776 567777754 778888888877777 77888888888888888888876 454443 56777888
Q ss_pred EEccCCcCcc-cccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchh-hhhccCCCeEEEccC
Q 036932 332 LDLSGNNFYG-QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHW-IGNFSSDLKVLLMSK 409 (790)
Q Consensus 332 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~~~L~~L~l~~ 409 (790)
+.+..|++.. -+|..+..+..|+.|||++|+++ ..|..+...+++-.|+||+|+|. .||.. +.++.. |-.|++++
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtD-LLfLDLS~ 159 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTD-LLFLDLSN 159 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHh-Hhhhcccc
Confidence 8888887753 35666677888888888888887 67777777788888888888887 55544 445555 88888888
Q ss_pred ccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCc-cccchhhcCCCCCcEEeccCCcccccC
Q 036932 410 MFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLS-GPIPIALFRSSNLITLDLRDNRFSGVI 487 (790)
Q Consensus 410 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~-~~~p~~~~~~~~L~~L~L~~N~l~~~~ 487 (790)
|++. .+|+.+..+..|++|+|++|.+....-... .+++|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|.+. ..
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 8876 567777778888888888887764333333 5677888888887654 347888888888888888888887 77
Q ss_pred chhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccc
Q 036932 488 PHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGS 567 (790)
Q Consensus 488 p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (790)
|+++..+++|+.|+|++|+|+ .+........+|++|++|.|+++ .+|.++..+
T Consensus 238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL------------------------- 290 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL------------------------- 290 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhh-------------------------
Confidence 888888888888888888887 44445566778888888888887 788877653
Q ss_pred ccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCccc-ccCChhhhhce-ecceeccCC
Q 036932 568 IGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLT-GGIPSEIGDLQ-IRGLNLSYN 645 (790)
Q Consensus 568 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-g~ip~~~~~l~-L~~L~Ls~N 645 (790)
+.|+.|++.+|+++ ..||..||.+. |+++..++|
T Consensus 291 --------------------------------------------~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 291 --------------------------------------------TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred --------------------------------------------HHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence 35666667777765 45777888776 888888888
Q ss_pred ccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCc
Q 036932 646 FLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNN 694 (790)
Q Consensus 646 ~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~ 694 (790)
.+. ..|+.+..+..|+.|.|++|+|. ..|.++.-|+-|+.||+..|+
T Consensus 327 ~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 327 KLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 877 77888888888888888888876 677777778888888888875
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=4.6e-33 Score=288.22 Aligned_cols=365 Identities=26% Similarity=0.371 Sum_probs=282.4
Q ss_pred CCCCCCEEecCCCcCc-ccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCc
Q 036932 81 ELKNLSEFILRGINIK-GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLE 159 (790)
Q Consensus 81 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 159 (790)
-++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.|.+|++|.+++|++.... ..+..++.|+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH--GELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh--hhhccchhhH
Confidence 4566677888888888 457888889999999999999998 78999999999999999999886322 3455555555
Q ss_pred EEEccCCCCCcccccCCCCCCccceEEeCCCCCC--CCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEecc
Q 036932 160 VLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNL--KVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLT 237 (790)
Q Consensus 160 ~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~ 237 (790)
.+++.. |++ ..+|..++.+..|+.||||+|++. ++|..+- .-++
T Consensus 82 sv~~R~-------------------------N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE-~AKn------- 127 (1255)
T KOG0444|consen 82 SVIVRD-------------------------NNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLE-YAKN------- 127 (1255)
T ss_pred HHhhhc-------------------------cccccCCCCchhcccccceeeecchhhhh-hcchhhh-hhcC-------
Confidence 555544 444 457777888888888888888887 7776542 2233
Q ss_pred CCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccc
Q 036932 238 NNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGE 317 (790)
Q Consensus 238 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 317 (790)
+-+|+||+|+|. .||..+|.+++.|-.||||+|++. .+|+.+..+..|++|+|++|.+. .
T Consensus 128 -----------------~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-h 187 (1255)
T KOG0444|consen 128 -----------------SIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLN-H 187 (1255)
T ss_pred -----------------cEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhh-H
Confidence 345666666666 788888888888888899988888 77888888888899999888775 3
Q ss_pred cChhhhhcCCcCcEEEccCCcCc-ccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhh
Q 036932 318 LPAPLLTGCISLGLLDLSGNNFY-GQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIG 396 (790)
Q Consensus 318 i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 396 (790)
..-.-...+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|++. .+|+.+..+++|+.|+||+|+|+ .+....+
T Consensus 188 fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~ 265 (1255)
T KOG0444|consen 188 FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG 265 (1255)
T ss_pred HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH
Confidence 22222234567778888776543 346777888888999999999887 78888888899999999999888 5555555
Q ss_pred hccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccC-cccccc-cccccceeeccCCcCccccchhhcCCCCCc
Q 036932 397 NFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSG-PMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLI 474 (790)
Q Consensus 397 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~ 474 (790)
.... ++.|+++.|+++ .+|.+++.++.|+.|.+.+|.++- -+|+.+ ++.+|+.+...+|.+. .+|+.++.|..|+
T Consensus 266 ~W~~-lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 266 EWEN-LETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred HHhh-hhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence 5566 888899998887 788888888889988888888763 234444 8888888888888887 7888899999999
Q ss_pred EEeccCCcccccCchhhhcCccccEEeccCcccc
Q 036932 475 TLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLE 508 (790)
Q Consensus 475 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 508 (790)
.|.|+.|++- .+|+++.-++.|+.||++.|.--
T Consensus 343 kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 343 KLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred Hhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 9999999887 67888888888999999888644
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.94 E-value=4e-28 Score=239.98 Aligned_cols=426 Identities=22% Similarity=0.236 Sum_probs=286.5
Q ss_pred cccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcc-cccccccCh
Q 036932 242 TGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPK-NNFSGELPA 320 (790)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~i~~ 320 (790)
.|...+|..-.+...+++|..|.|+ .+|...|..+++|++|||++|.|+.+.|++|.++++|.+|-+.+ |+|+ .+|.
T Consensus 56 ~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPK 133 (498)
T ss_pred CCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhh
Confidence 3333455556667889999999999 99999999999999999999999999999999999998887776 8898 9999
Q ss_pred hhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcC-----------
Q 036932 321 PLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSG----------- 389 (790)
Q Consensus 321 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----------- 389 (790)
..|.++.+|+.|.+.-|++.....+.|..++++..|.+.+|.+..+--..|..+.+++.+.+..|.+..
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~ 213 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDL 213 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHH
Confidence 999999999999999999999989999999999999999999985544588999999999999998431
Q ss_pred -CCchhhhhccCCCeEEEccCccccccchhhhccC-CCCCEEecCCccccCccc-ccc-cccccceeeccCCcCccccch
Q 036932 390 -HIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH-GSLNLLSVSENCLSGPMT-SSF-NLSSLEHLYLQMNSLSGPIPI 465 (790)
Q Consensus 390 -~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~-~~~-~l~~L~~L~L~~n~l~~~~p~ 465 (790)
..|..++.... ..-..+.+.++...-+..+... ..+..--.+.+...+.-| .+| .+++|++|+|++|+++++-+.
T Consensus 214 a~~~ietsgarc-~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~ 292 (498)
T KOG4237|consen 214 AMNPIETSGARC-VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDG 292 (498)
T ss_pred hhchhhccccee-cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhh
Confidence 11111111111 1111222333322222222211 111111112222333333 355 899999999999999998899
Q ss_pred hhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHh
Q 036932 466 ALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLW 545 (790)
Q Consensus 466 ~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~ 545 (790)
+|.....+++|.|..|++...-...|.++..|+.|+|.+|+|+..-|..|..+..|.+|+|-.|++....- +..+..|
T Consensus 293 aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~--l~wl~~W 370 (498)
T KOG4237|consen 293 AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR--LAWLGEW 370 (498)
T ss_pred hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc--hHHHHHH
Confidence 99999999999999999997777889999999999999999999999999999999999999999874332 2222233
Q ss_pred hcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccc-eEEECCCCcc
Q 036932 546 VAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYM-VGLDLSCNQL 624 (790)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l 624 (790)
+.+......+..+-.. |+..+ ..+...+....-+ .+ ++......... ...++-+ +....|++.+
T Consensus 371 lr~~~~~~~~~Cq~p~--~~~~~---~~~dv~~~~~~c~----~~--ee~~~~~s~~c----P~~c~c~~tVvRcSnk~l 435 (498)
T KOG4237|consen 371 LRKKSVVGNPRCQSPG--FVRQI---PISDVAFGDFRCG----GP--EELGCLTSSPC----PPPCTCLDTVVRCSNKLL 435 (498)
T ss_pred HhhCCCCCCCCCCCCc--hhccc---cchhccccccccC----Cc--cccCCCCCCCC----CCCcchhhhhHhhcccch
Confidence 3333222222222111 00000 0111111000000 00 00000000000 0011112 2234555555
Q ss_pred cccCChhhhhceecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccC
Q 036932 625 TGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFN 693 (790)
Q Consensus 625 ~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N 693 (790)
. .+|+.+. ...+.|++.+|.++ .+|.+ .+.+| .+|+|+|+|+..--..|.+|+.|.+|-+|||
T Consensus 436 k-~lp~~iP-~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 436 K-LLPRGIP-VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred h-hcCCCCC-chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 4 4443321 11556788888888 77776 66777 8888888888877788888888888888887
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=8.9e-26 Score=223.42 Aligned_cols=394 Identities=20% Similarity=0.230 Sum_probs=276.7
Q ss_pred EEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccC
Q 036932 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSG 336 (790)
Q Consensus 257 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~ 336 (790)
..+-++-.++ ++|..+ .+.-..++|..|.|+...|.+|+.+++|+.|||++|+|+ .|.++.|.++.+|..|-+.+
T Consensus 50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence 4566666777 888876 467889999999999888889999999999999999998 88888899999988877776
Q ss_pred -CcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCch-hhhhccCCCeEEEccCcccc-
Q 036932 337 -NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPH-WIGNFSSDLKVLLMSKMFLK- 413 (790)
Q Consensus 337 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~~~~~L~~L~l~~n~l~- 413 (790)
|+|+...-..|.++.+++.|.+.-|++.....+.|+.++++..|.+.+|.+. .++. .+..+.. ++.+.+..|.+.
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~-i~tlhlA~np~ic 202 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAA-IKTLHLAQNPFIC 202 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhc-cchHhhhcCcccc
Confidence 8998887788999999999999999999888889999999999999999998 4444 6666666 888888777632
Q ss_pred -----------ccchhhhccCCCCCEEecCCccccCcccccc--cccccceeeccCCcCccccc-hhhcCCCCCcEEecc
Q 036932 414 -----------GNIPAQLLNHGSLNLLSVSENCLSGPMTSSF--NLSSLEHLYLQMNSLSGPIP-IALFRSSNLITLDLR 479 (790)
Q Consensus 414 -----------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~L~~n~l~~~~p-~~~~~~~~L~~L~L~ 479 (790)
...|..++......-..+.++.+....+..| ....+..-..+.+...++.| ..|..+++|+.|+|+
T Consensus 203 dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 203 DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence 1233334444444455555666655555555 22233333334444544555 468899999999999
Q ss_pred CCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHH----hhcccccCCCc
Q 036932 480 DNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLL----WVAGNVYLHEP 555 (790)
Q Consensus 480 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~----~~~~~~~~~~~ 555 (790)
+|+++++-+.||.+..++++|.|..|++...-...|.++..|+.|+|++|+|+..-|..+..+.. ....+.+....
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 99999999999999999999999999998777888999999999999999999777766544332 12223333332
Q ss_pred ccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCccc---ccCChhh
Q 036932 556 YLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLT---GGIPSEI 632 (790)
Q Consensus 556 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~---g~ip~~~ 632 (790)
.+. |...|..-... .+.|+ .+....++.++++.+.+. -.-|++.
T Consensus 363 ~l~------------wl~~Wlr~~~~-----~~~~~----------------Cq~p~~~~~~~~~dv~~~~~~c~~~ee~ 409 (498)
T KOG4237|consen 363 RLA------------WLGEWLRKKSV-----VGNPR----------------CQSPGFVRQIPISDVAFGDFRCGGPEEL 409 (498)
T ss_pred chH------------HHHHHHhhCCC-----CCCCC----------------CCCCchhccccchhccccccccCCcccc
Confidence 221 21111110000 00000 011234555555555432 1233333
Q ss_pred hhce----------e-cceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCccee
Q 036932 633 GDLQ----------I-RGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSG 697 (790)
Q Consensus 633 ~~l~----------L-~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g 697 (790)
+-.. + ++..-|++.++ .+|..+. ..-.+|++.+|+++ .+|.+ .+.+| .+|+|+|+++-
T Consensus 410 ~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~ 478 (498)
T KOG4237|consen 410 GCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS 478 (498)
T ss_pred CCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence 2221 3 33445555555 5665443 45678999999998 77777 66788 89999999873
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=3.1e-22 Score=244.31 Aligned_cols=339 Identities=22% Similarity=0.251 Sum_probs=193.8
Q ss_pred ChhHHhhcccccEecccCCc------cccccchhhhccc-ccccccCcccccccccChhhhhcCCcCcEEEccCCcCccc
Q 036932 270 PEDMGIILQKLLYIDMSDNR------FEGYLPSSIGEMK-ALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQ 342 (790)
Q Consensus 270 p~~~~~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~ 342 (790)
....|..+.+|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|+.|++.+|.+. .
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence 33444556666666664432 2223455555443 4666666666665 666543 3566666666666654 3
Q ss_pred ccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhcc
Q 036932 343 IFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLN 422 (790)
Q Consensus 343 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 422 (790)
++..+..+++|+.++++++...+.+|. +..+++|+.|++++|.....+|..+..+.. |+.|++++|...+.+|..+ +
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~-L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNK-LEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCC-CCEEeCCCCCCcCccCCcC-C
Confidence 444555666666666666543334443 555666677777666655566666666666 6667766665555555544 5
Q ss_pred CCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCccc-------ccCchhhhcCc
Q 036932 423 HGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFS-------GVIPHQISESL 495 (790)
Q Consensus 423 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~-------~~~p~~~~~l~ 495 (790)
+++|+.|++++|...+.+|.. ..+|+.|++++|.++ .+|..+ .+++|+.|++.++... ...+......+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 666777777666544444432 345666777777665 455443 4566666666653321 11112223345
Q ss_pred cccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccccccccccc
Q 036932 496 TLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNST 575 (790)
Q Consensus 496 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 575 (790)
+|+.|++++|...+.+|..++++++|+.|++++|+..+.+|..+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------ 822 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------ 822 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence 67777777776666667777777777777777665444444321
Q ss_pred ccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhceecceeccCCccccccCccc
Q 036932 576 FHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSF 655 (790)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~l 655 (790)
.+++|+.|++++|.....+|.... .|+.|+|++|.++ .+|..+
T Consensus 823 ----------------------------------~L~sL~~L~Ls~c~~L~~~p~~~~--nL~~L~Ls~n~i~-~iP~si 865 (1153)
T PLN03210 823 ----------------------------------NLESLESLDLSGCSRLRTFPDIST--NISDLNLSRTGIE-EVPWWI 865 (1153)
T ss_pred ----------------------------------CccccCEEECCCCCcccccccccc--ccCEeECCCCCCc-cChHHH
Confidence 134566666666544334443221 1566666666666 466666
Q ss_pred cCCCCCCEEEccC-CcccccCCccccCCCCCCeEecccC
Q 036932 656 SNLKWIESLDLSH-NRLSGQVPPRLTELNFLSNFNVSFN 693 (790)
Q Consensus 656 ~~l~~L~~LdLs~-N~lsg~ip~~l~~l~~L~~L~ls~N 693 (790)
+.+++|+.|+|++ |+|. .+|..+..++.|+.++++++
T Consensus 866 ~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred hcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence 6666666666665 4444 35555666666666666655
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=8.3e-22 Score=240.54 Aligned_cols=307 Identities=22% Similarity=0.251 Sum_probs=190.3
Q ss_pred ccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEE
Q 036932 278 QKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLY 357 (790)
Q Consensus 278 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 357 (790)
.+|+.|.+.++.+. .+|..+ ...+|+.|++.+|++. .++... ..+++|+.++++++.....+| .+..+++|++|+
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEE
Confidence 34555555555554 444444 3445555555555554 444332 345555555555544333333 244555566666
Q ss_pred cCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCcccc
Q 036932 358 LENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLS 437 (790)
Q Consensus 358 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 437 (790)
+++|.....+|..+..+++|+.|++++|.....+|..+ ++.+ |+.|++++|...+.+|.. .++|+.|++++|.+.
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s-L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS-LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE 738 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC-CCEEeCCCCCCccccccc---cCCcCeeecCCCccc
Confidence 65554444555555555666666666554333455443 3344 666666665544444432 245667777777665
Q ss_pred CcccccccccccceeeccCCcC-------ccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCcccccc
Q 036932 438 GPMTSSFNLSSLEHLYLQMNSL-------SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQ 510 (790)
Q Consensus 438 ~~~~~~~~l~~L~~L~L~~n~l-------~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 510 (790)
. +|..+.+++|++|.+.++.. ....+......++|+.|++++|...+.+|.+++++++|+.|++++|...+.
T Consensus 739 ~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 739 E-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred c-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence 3 34444566677776665332 111222333456888889988887778888888888999999988865557
Q ss_pred CCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccC
Q 036932 511 IPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFP 590 (790)
Q Consensus 511 ~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 590 (790)
+|..+ .+++|+.|++++|.....+|.
T Consensus 818 LP~~~-~L~sL~~L~Ls~c~~L~~~p~----------------------------------------------------- 843 (1153)
T PLN03210 818 LPTGI-NLESLESLDLSGCSRLRTFPD----------------------------------------------------- 843 (1153)
T ss_pred eCCCC-CccccCEEECCCCCccccccc-----------------------------------------------------
Confidence 77665 688899999988764433332
Q ss_pred cceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccC-CccccccCccccCCCCCCEEEccC
Q 036932 591 QLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSY-NFLSGSIPGSFSNLKWIESLDLSH 668 (790)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~ 668 (790)
..++++.|+|++|.++ .+|..++.+. |+.|+|++ |+++ .+|..+..+++|+.|++++
T Consensus 844 -------------------~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 844 -------------------ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred -------------------cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCC
Confidence 1246788889999887 7888888887 88999988 5566 5777888888999999887
Q ss_pred Cc
Q 036932 669 NR 670 (790)
Q Consensus 669 N~ 670 (790)
+.
T Consensus 903 C~ 904 (1153)
T PLN03210 903 CG 904 (1153)
T ss_pred Cc
Confidence 73
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=1.5e-21 Score=220.57 Aligned_cols=192 Identities=27% Similarity=0.308 Sum_probs=91.4
Q ss_pred ccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEccc
Q 036932 305 IFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISN 384 (790)
Q Consensus 305 ~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 384 (790)
..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++. +|.. .++|+.|++++
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS 271 (788)
T ss_pred cEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence 34455555554 4554332 245555555555543 221 13455555555555552 2321 24555555555
Q ss_pred ccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccc
Q 036932 385 NLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIP 464 (790)
Q Consensus 385 n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p 464 (790)
|.+. .+|... ..|+.|++++|+++. +|.. .++|+.|++++|.+++... . ..+|+.|++++|++++ +|
T Consensus 272 N~L~-~Lp~lp----~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~~Lp~-l--p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLT-HLPALP----SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA-L--PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchh-hhhhch----hhcCEEECcCCcccc-cccc---ccccceeECCCCccccCCC-C--cccccccccccCcccc-cc
Confidence 5554 233211 125555555555542 2321 2346666666666554321 1 2345556666666652 44
Q ss_pred hhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCc
Q 036932 465 IALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 465 ~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 532 (790)
.. ..+|+.|+|++|+|++ +|.. ..+|+.|++++|+++. +|.. ..+|+.|++++|+++
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt 395 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT 395 (788)
T ss_pred cc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc
Confidence 21 1356666666666653 3321 2345555666666552 3432 234566666666655
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=1.7e-21 Score=220.10 Aligned_cols=264 Identities=23% Similarity=0.263 Sum_probs=202.7
Q ss_pred CcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEE
Q 036932 327 ISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLL 406 (790)
Q Consensus 327 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~ 406 (790)
..-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. .+++|++|++++|+++ .+|.. +..|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----ccccceee
Confidence 45678999999998 4666654 489999999999984 554 2588999999999998 45643 23499999
Q ss_pred ccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCccccc
Q 036932 407 MSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGV 486 (790)
Q Consensus 407 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~ 486 (790)
+++|.++ .+|... .+|+.|++++|.++.... ..++|+.|++++|++++ +|.. ...|+.|++++|++++
T Consensus 269 Ls~N~L~-~Lp~lp---~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 269 IFSNPLT-HLPALP---SGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred ccCCchh-hhhhch---hhcCEEECcCCccccccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 9999887 344432 468889999999886433 24689999999999984 4542 2468888999999984
Q ss_pred CchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccc
Q 036932 487 IPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVG 566 (790)
Q Consensus 487 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 566 (790)
+|.. ..+|+.|++++|++++ +|.. .++|+.|++++|+++ .+|..
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---------------------------- 380 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---------------------------- 380 (788)
T ss_pred cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc----------------------------
Confidence 5542 2478999999999984 5543 357788899999887 35531
Q ss_pred cccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhceecceeccCCc
Q 036932 567 SIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNF 646 (790)
Q Consensus 567 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~L~~L~Ls~N~ 646 (790)
...|+.|++++|+|+ .+|.... .|+.|++|+|+
T Consensus 381 --------------------------------------------~~~L~~LdLs~N~Lt-~LP~l~s--~L~~LdLS~N~ 413 (788)
T PRK15387 381 --------------------------------------------PSGLKELIVSGNRLT-SLPVLPS--ELKELMVSGNR 413 (788)
T ss_pred --------------------------------------------ccccceEEecCCccc-CCCCccc--CCCEEEccCCc
Confidence 235788999999998 4775432 28899999999
Q ss_pred cccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCC
Q 036932 647 LSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK 702 (790)
Q Consensus 647 l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 702 (790)
|++ +|... .+|+.|||++|+|+ .+|..+..++.|+.|+|++|+|+|.+|+.
T Consensus 414 Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 414 LTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred CCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 994 77643 46788999999998 78999999999999999999999988753
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=2.7e-19 Score=203.90 Aligned_cols=223 Identities=24% Similarity=0.322 Sum_probs=124.4
Q ss_pred CCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeecc
Q 036932 376 ELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQ 455 (790)
Q Consensus 376 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~ 455 (790)
+|+.|++++|+++ .+|..+. ..|+.|++++|.+. .+|..+. ++|+.|++++|.++.. |..+ .++|+.|+++
T Consensus 221 nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l-~~sL~~L~Ls 291 (754)
T PRK15370 221 NIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCL-PENL-PEELRYLSVY 291 (754)
T ss_pred CCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCcc-cccc-CCCCcEEECC
Confidence 4444444444444 3333222 12445555555444 3343332 2456666666655532 2222 2356666666
Q ss_pred CCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccC
Q 036932 456 MNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSI 535 (790)
Q Consensus 456 ~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~ 535 (790)
+|+++ .+|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+
T Consensus 292 ~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~L 361 (754)
T PRK15370 292 DNSIR-TLPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VL 361 (754)
T ss_pred CCccc-cCcccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cC
Confidence 66666 3444332 356677777777763 343332 467777777777764 555443 57777888887776 45
Q ss_pred ChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccce
Q 036932 536 PSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMV 615 (790)
Q Consensus 536 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 615 (790)
|..+ .+.|+
T Consensus 362 P~~l-----------------------------------------------------------------------p~~L~ 370 (754)
T PRK15370 362 PETL-----------------------------------------------------------------------PPTIT 370 (754)
T ss_pred Chhh-----------------------------------------------------------------------cCCcC
Confidence 5321 13577
Q ss_pred EEECCCCcccccCChhhhhceecceeccCCccccccCcc----ccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 036932 616 GLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGS----FSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVS 691 (790)
Q Consensus 616 ~L~Ls~N~l~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~----l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls 691 (790)
.|++++|+|+ .+|..+.. .|+.|++++|+|+ .+|.. ++.++.+..|++.+|.++. . .+..|+.+ ++
T Consensus 371 ~LdLs~N~Lt-~LP~~l~~-sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~---tl~~L~~L-l~ 440 (754)
T PRK15370 371 TLDVSRNALT-NLPENLPA-ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---R---TIQNMQRL-MS 440 (754)
T ss_pred EEECCCCcCC-CCCHhHHH-HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---H---HHHHHHHh-hh
Confidence 7788888877 56665532 3777888888877 44543 3445777888888888763 2 23333344 44
Q ss_pred cCcceec
Q 036932 692 FNNLSGL 698 (790)
Q Consensus 692 ~N~l~g~ 698 (790)
.+.+.|+
T Consensus 441 s~~~~gp 447 (754)
T PRK15370 441 SVGYQGP 447 (754)
T ss_pred cccccCC
Confidence 4555554
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=5.1e-19 Score=201.69 Aligned_cols=229 Identities=24% Similarity=0.362 Sum_probs=109.9
Q ss_pred CCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEc
Q 036932 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDL 334 (790)
Q Consensus 255 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L 334 (790)
...|+++++.++ .+|..+ .+.|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. .+|+.|++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~L 248 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMEL 248 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEEC
Confidence 344555555554 444433 234555555555555 3333332 34555555555554 4443321 24455555
Q ss_pred cCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccc
Q 036932 335 SGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG 414 (790)
Q Consensus 335 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~ 414 (790)
++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp------------------ 303 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP------------------ 303 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch------------------
Confidence 555544 2232221 24455555555544 2333221 34555555555544 2232111
Q ss_pred cchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcC
Q 036932 415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISES 494 (790)
Q Consensus 415 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l 494 (790)
++|+.|++++|.++...... .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 304 ---------~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-- 366 (754)
T PRK15370 304 ---------SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-- 366 (754)
T ss_pred ---------hhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--
Confidence 13444445555444322111 2355666666666653 454442 46666666666665 3454442
Q ss_pred ccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHH
Q 036932 495 LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLT 540 (790)
Q Consensus 495 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~ 540 (790)
++|+.|++++|+++ .+|..+. ..|+.|++++|+++ .+|..+.
T Consensus 367 ~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~ 408 (754)
T PRK15370 367 PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLP 408 (754)
T ss_pred CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHH
Confidence 46666666666666 3444332 35666777777776 5565443
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=2e-19 Score=191.15 Aligned_cols=281 Identities=25% Similarity=0.277 Sum_probs=166.3
Q ss_pred EEEccCCcCcc-cccccccCCCCCcEEEcCCcccccc----cccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEE
Q 036932 331 LLDLSGNNFYG-QIFPKYMNLTQLEFLYLENNKFSGK----IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVL 405 (790)
Q Consensus 331 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L 405 (790)
.|+|..+.+++ .....+..++.|+.++++++.++.. ++..+...+.+++++++++.+.+ .+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~---------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL---------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence 46667777662 3333445566677888877776432 34445556667777777766542 11111
Q ss_pred EccCccccccchhhhccCCCCCEEecCCccccCcccccc-ccc---ccceeeccCCcCcc----ccchhhcCC-CCCcEE
Q 036932 406 LMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLS---SLEHLYLQMNSLSG----PIPIALFRS-SNLITL 476 (790)
Q Consensus 406 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~---~L~~L~L~~n~l~~----~~p~~~~~~-~~L~~L 476 (790)
..++..+..+++|+.|++++|.+.+..+..+ .+. +|++|++++|++++ .+...+..+ ++|+.|
T Consensus 71 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 71 --------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142 (319)
T ss_pred --------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence 1233444555666666666666654443333 233 37777777776652 223344555 677777
Q ss_pred eccCCccccc----CchhhhcCccccEEeccCcccccc----CCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcc
Q 036932 477 DLRDNRFSGV----IPHQISESLTLRFLLLRGNYLEGQ----IPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAG 548 (790)
Q Consensus 477 ~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~ 548 (790)
++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++.-+..+....
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~----- 217 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL----- 217 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh-----
Confidence 7777777632 233455566777777777777642 233445556788888888877633222222110
Q ss_pred cccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccC
Q 036932 549 NVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGI 628 (790)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~i 628 (790)
..++.|+.|++++|.+++..
T Consensus 218 ------------------------------------------------------------~~~~~L~~L~ls~n~l~~~~ 237 (319)
T cd00116 218 ------------------------------------------------------------ASLKSLEVLNLGDNNLTDAG 237 (319)
T ss_pred ------------------------------------------------------------cccCCCCEEecCCCcCchHH
Confidence 12457778888888777543
Q ss_pred Chhhhhc------eecceeccCCccc----cccCccccCCCCCCEEEccCCccccc----CCccccCC-CCCCeEecccC
Q 036932 629 PSEIGDL------QIRGLNLSYNFLS----GSIPGSFSNLKWIESLDLSHNRLSGQ----VPPRLTEL-NFLSNFNVSFN 693 (790)
Q Consensus 629 p~~~~~l------~L~~L~Ls~N~l~----g~ip~~l~~l~~L~~LdLs~N~lsg~----ip~~l~~l-~~L~~L~ls~N 693 (790)
+..+... .|+.|++++|.++ +.+++.+..+++|+.+|+++|.++.. ....+... +.|+++++.+|
T Consensus 238 ~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 3333221 2778888888776 23445566678888888888888854 44444444 67788888777
Q ss_pred cc
Q 036932 694 NL 695 (790)
Q Consensus 694 ~l 695 (790)
++
T Consensus 318 ~~ 319 (319)
T cd00116 318 SF 319 (319)
T ss_pred CC
Confidence 64
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=1.7e-18 Score=184.14 Aligned_cols=271 Identities=25% Similarity=0.248 Sum_probs=112.1
Q ss_pred EEeecCCCCccCChhHHhhcccccEecccCCccccc----cchhhhcccccccccCcccccccccCh------hhhhcCC
Q 036932 258 LDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGY----LPSSIGEMKALIFLRLPKNNFSGELPA------PLLTGCI 327 (790)
Q Consensus 258 L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~~i~~------~~~~~l~ 327 (790)
|+|..+.+++.-....+..+..|++|+++++.+++. ++..+...+++++++++++.+.+ .+. ..+..++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcC
Confidence 344444443222223333344555555555555321 23333344445555555554431 111 1123344
Q ss_pred cCcEEEccCCcCcccccccccCCCC---CcEEEcCCccccc----ccccccCCC-CCCcEEEcccccCcCCC----chhh
Q 036932 328 SLGLLDLSGNNFYGQIFPKYMNLTQ---LEFLYLENNKFSG----KIEEGLSNS-NELNELDISNNLLSGHI----PHWI 395 (790)
Q Consensus 328 ~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~Ls~n~l~~~~----p~~~ 395 (790)
+|+.|++++|.+.+..+..+..+.. |++|++++|+++. .+...+..+ ++|+.|++++|.+++.. +..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 5555555555554333333322222 5555555555441 111223333 45555555555554211 1122
Q ss_pred hhccCCCeEEEccCcccccc----chhhhccCCCCCEEecCCccccCcccc----cc-cccccceeeccCCcCccccchh
Q 036932 396 GNFSSDLKVLLMSKMFLKGN----IPAQLLNHGSLNLLSVSENCLSGPMTS----SF-NLSSLEHLYLQMNSLSGPIPIA 466 (790)
Q Consensus 396 ~~~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~-~l~~L~~L~L~~n~l~~~~p~~ 466 (790)
..+.. |+.|++++|.+++. ++..+..+++|+.|++++|.+++.... .+ .+++|++|++++|.+++.....
T Consensus 162 ~~~~~-L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 162 RANRD-LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HhCCC-cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 22223 44444444444421 222233334555555555554432211 11 3444555555555544321111
Q ss_pred hc-----CCCCCcEEeccCCcccc----cCchhhhcCccccEEeccCcccccc----CCccccCC-CCCCEEEccCCc
Q 036932 467 LF-----RSSNLITLDLRDNRFSG----VIPHQISESLTLRFLLLRGNYLEGQ----IPNQLCQL-RRLGVLDLSHNR 530 (790)
Q Consensus 467 ~~-----~~~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~l-~~L~~L~Ls~N~ 530 (790)
+. ..+.|+.|++++|.++. .+...+..+++|+.+++++|.++.. ....+... +.|+.+|+.+|+
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 11 12455555555555541 1222333344555555555555432 22223333 455555555554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.70 E-value=4.5e-19 Score=156.09 Aligned_cols=187 Identities=28% Similarity=0.450 Sum_probs=159.3
Q ss_pred ccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCC
Q 036932 440 MTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLR 519 (790)
Q Consensus 440 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~ 519 (790)
++..|+++..+.|.|++|+++ .+|..+..+.+|++|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p 102 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFP 102 (264)
T ss_pred cccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCc
Confidence 445567888999999999999 78889999999999999999998 78899999999999999999998 8899999999
Q ss_pred CCCEEEccCCcCcc-cCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEe
Q 036932 520 RLGVLDLSHNRISG-SIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFM 598 (790)
Q Consensus 520 ~L~~L~Ls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (790)
.|++|||.+|+++. .+|..+..
T Consensus 103 ~levldltynnl~e~~lpgnff~--------------------------------------------------------- 125 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFY--------------------------------------------------------- 125 (264)
T ss_pred hhhhhhccccccccccCCcchhH---------------------------------------------------------
Confidence 99999999999873 34443322
Q ss_pred eccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCc
Q 036932 599 TKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPP 677 (790)
Q Consensus 599 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~ 677 (790)
++.|+.|+|+.|.|. .+|..++.++ |+.|.+..|.+- ..|.+++.+++|+.|.+.+|+++ .+|.
T Consensus 126 ------------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlpp 190 (264)
T KOG0617|consen 126 ------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPP 190 (264)
T ss_pred ------------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecCh
Confidence 346778899999998 8999999998 999999999988 78999999999999999999998 7888
Q ss_pred cccCCCCC---CeEecccCcceecCCC
Q 036932 678 RLTELNFL---SNFNVSFNNLSGLIPD 701 (790)
Q Consensus 678 ~l~~l~~L---~~L~ls~N~l~g~iP~ 701 (790)
+++.+.-+ +.+.+.+|++.-+|.+
T Consensus 191 el~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 191 ELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred hhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 88876533 4566778887766543
No 22
>PLN03150 hypothetical protein; Provisional
Probab=99.62 E-value=8.3e-16 Score=175.27 Aligned_cols=117 Identities=34% Similarity=0.579 Sum_probs=104.9
Q ss_pred cceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 036932 613 YMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVS 691 (790)
Q Consensus 613 ~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls 691 (790)
.++.|+|++|.++|.+|..++.+. |+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 478999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceecCCCC--CcCCCcCcccccCCcCCCCCCCCCCCC
Q 036932 692 FNNLSGLIPDK--GQFATFDESSYRGNLHLCGPTINKSCN 729 (790)
Q Consensus 692 ~N~l~g~iP~~--~~~~~~~~~~~~gn~~lcg~~~~~~c~ 729 (790)
+|+++|.+|.. ..+.......+.||+++||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999976 222233455688999999987656674
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=1.2e-16 Score=140.89 Aligned_cols=174 Identities=26% Similarity=0.435 Sum_probs=102.0
Q ss_pred CCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEec
Q 036932 352 QLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSV 431 (790)
Q Consensus 352 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 431 (790)
.++.|.+++|+++ .+|..++.+.+|+.|.+++|+++ .+|..+..+++ |+.|++.-|++. ..|..|+.++.|+.||+
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~k-lr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPK-LRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchh-hhheecchhhhh-cCccccCCCchhhhhhc
Confidence 3344444444444 33333444444444444444444 34444444444 444444444443 44555555666666666
Q ss_pred CCccccC-cccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccc
Q 036932 432 SENCLSG-PMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEG 509 (790)
Q Consensus 432 ~~n~l~~-~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 509 (790)
.+|++.. ..|..| .+..|+.|+|+.|.+. .+|..++.+++|+.|.+.+|.+- .+|..++.+..|++|++.+|+++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-
Confidence 6666653 344444 7777788888888776 67777788888888888888776 56777777777888888888777
Q ss_pred cCCccccCCC---CCCEEEccCCcCc
Q 036932 510 QIPNQLCQLR---RLGVLDLSHNRIS 532 (790)
Q Consensus 510 ~~~~~l~~l~---~L~~L~Ls~N~l~ 532 (790)
.+|..++++. +=+++.+.+|+.-
T Consensus 187 vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 187 VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 5555555432 2233445555543
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=3.1e-14 Score=148.43 Aligned_cols=191 Identities=28% Similarity=0.438 Sum_probs=104.6
Q ss_pred CCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCc
Q 036932 426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN 505 (790)
Q Consensus 426 L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 505 (790)
-...|++.|.+.......-.+..|+.+.|..|.+. .+|..+..+..|+.+||+.|+++ ..|..++.++ |+.|.+++|
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34455555555533322224455555555555555 45555555555555566655555 4444454443 555555555
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCc
Q 036932 506 YLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGV 585 (790)
Q Consensus 506 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 585 (790)
+++ .+|..++.+..|..||.+.|.+. .+|..++.
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~-------------------------------------------- 187 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGY-------------------------------------------- 187 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhh--------------------------------------------
Confidence 555 45555555555555555555554 44443332
Q ss_pred ccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhceecceeccCCccccccCccccCCCCCCEEE
Q 036932 586 YSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLD 665 (790)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~l~~l~~L~~Ld 665 (790)
+.+|+.|.+..|++. ..|++++.|.|..||+|+|+++ .||-.|.+|+.|++|-
T Consensus 188 -------------------------l~slr~l~vrRn~l~-~lp~El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 188 -------------------------LTSLRDLNVRRNHLE-DLPEELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQ 240 (722)
T ss_pred -------------------------HHHHHHHHHhhhhhh-hCCHHHhCCceeeeecccCcee-ecchhhhhhhhheeee
Confidence 334555666666665 5666666666666666666666 6666666666666666
Q ss_pred ccCCcccccCCccccC---CCCCCeEecccC
Q 036932 666 LSHNRLSGQVPPRLTE---LNFLSNFNVSFN 693 (790)
Q Consensus 666 Ls~N~lsg~ip~~l~~---l~~L~~L~ls~N 693 (790)
|.+|-|. ..|..+.. ..-.++|+..-.
T Consensus 241 LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 241 LENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 6666665 34443322 223344544444
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=2.3e-13 Score=142.01 Aligned_cols=132 Identities=27% Similarity=0.349 Sum_probs=82.9
Q ss_pred CeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCC
Q 036932 402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN 481 (790)
Q Consensus 402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N 481 (790)
-...+++.|++. .+|..++.+..|+.+.++.|.+........++..|++++|+.|+++ .+|..++.++ |+.|-+++|
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 344566666665 5666666666666666666666543333336666666677766666 5566665553 666666776
Q ss_pred cccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhH
Q 036932 482 RFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCL 539 (790)
Q Consensus 482 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~ 539 (790)
+++ .+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++. .+|..+
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El 208 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEEL 208 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHH
Confidence 666 55666666666666677666666 56666666666666666666665 555444
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.27 E-value=6.3e-12 Score=137.51 Aligned_cols=198 Identities=34% Similarity=0.470 Sum_probs=123.7
Q ss_pred EEecCCccccCcccccccccccceeeccCCcCccccchhhcCCC-CCcEEeccCCcccccCchhhhcCccccEEeccCcc
Q 036932 428 LLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSS-NLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNY 506 (790)
Q Consensus 428 ~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 506 (790)
.+++..|.+...+......+.++.|++.+|.++ .+|....... +|+.|++++|++. .+|..+..++.|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 455555555444443334456666777777666 4555555553 6777777777776 444566777777777777777
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcc
Q 036932 507 LEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVY 586 (790)
Q Consensus 507 l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 586 (790)
+. .+|...+.+++|+.|++++|+++ .+|.....
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~--------------------------------------------- 207 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL--------------------------------------------- 207 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh---------------------------------------------
Confidence 76 44444446677777777777776 55543211
Q ss_pred cccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEE
Q 036932 587 SIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLD 665 (790)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~Ld 665 (790)
...|+.+++++|+.. .++..+..+. +..+.+++|++. .+|..++.++.++.||
T Consensus 208 ------------------------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 208 ------------------------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLD 261 (394)
T ss_pred ------------------------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceec
Confidence 224666667776433 4555555555 666667777766 3366677777777777
Q ss_pred ccCCcccccCCccccCCCCCCeEecccCcceecCCCC
Q 036932 666 LSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK 702 (790)
Q Consensus 666 Ls~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 702 (790)
+++|+++.. +. ++.+..++.|++++|.++...|..
T Consensus 262 ~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 262 LSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence 777777733 33 777777777777777777666543
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.23 E-value=1.3e-11 Score=141.11 Aligned_cols=91 Identities=35% Similarity=0.546 Sum_probs=83.6
Q ss_pred cccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCC-CCCCeE
Q 036932 611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEL-NFLSNF 688 (790)
Q Consensus 611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l-~~L~~L 688 (790)
++.|+.|+|++|.++|.+|..++.+. |+.|||++|+++|.+|+.++++++|+.|||++|+++|.+|..+..+ ..+..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 56899999999999999999999998 9999999999999999999999999999999999999999998874 467889
Q ss_pred ecccCcceecCCC
Q 036932 689 NVSFNNLSGLIPD 701 (790)
Q Consensus 689 ~ls~N~l~g~iP~ 701 (790)
++++|+..|.+|.
T Consensus 521 ~~~~N~~lc~~p~ 533 (623)
T PLN03150 521 NFTDNAGLCGIPG 533 (623)
T ss_pred EecCCccccCCCC
Confidence 9999987766653
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=6.2e-11 Score=129.70 Aligned_cols=182 Identities=35% Similarity=0.443 Sum_probs=138.6
Q ss_pred CCCCEEecCCccccCccccccccc-ccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEec
Q 036932 424 GSLNLLSVSENCLSGPMTSSFNLS-SLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLL 502 (790)
Q Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 502 (790)
+.++.|++.+|.++...+...... +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|......+.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence 567778888888776665555553 8888999999887 66677888899999999999998 55665557888999999
Q ss_pred cCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccC
Q 036932 503 RGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYG 582 (790)
Q Consensus 503 ~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 582 (790)
++|++. .+|.....+..|+++++++|++. .++..+.
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~------------------------------------------ 229 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS------------------------------------------ 229 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh------------------------------------------
Confidence 999998 66666556677999999999633 2332221
Q ss_pred CCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCC
Q 036932 583 NGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWI 661 (790)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L 661 (790)
.+..+..+.+++|++. .++..++.+. ++.|++++|.++ .++. ++.+.++
T Consensus 230 ---------------------------~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l 279 (394)
T COG4886 230 ---------------------------NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNL 279 (394)
T ss_pred ---------------------------hcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCcc
Confidence 2445666778888887 4467777777 999999999999 4444 8999999
Q ss_pred CEEEccCCcccccCCccccC
Q 036932 662 ESLDLSHNRLSGQVPPRLTE 681 (790)
Q Consensus 662 ~~LdLs~N~lsg~ip~~l~~ 681 (790)
+.||+++|.++...|.....
T Consensus 280 ~~L~~s~n~~~~~~~~~~~~ 299 (394)
T COG4886 280 RELDLSGNSLSNALPLIALL 299 (394)
T ss_pred CEEeccCccccccchhhhcc
Confidence 99999999999877766544
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=4.4e-11 Score=111.61 Aligned_cols=130 Identities=31% Similarity=0.350 Sum_probs=48.7
Q ss_pred hhcCCCCCCEEEcCCCCCCccccCc-CCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCccc-CCCCC
Q 036932 31 GFANLTNLKILDLSGCGITTLQGLT-KLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCL-KNLSH 108 (790)
Q Consensus 31 ~~~~l~~L~~L~Ls~n~i~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~ 108 (790)
.+.+..++++|+|.+|.|+.++.++ .+.+|+.|+|++|.|+... .+..+++|++|++++|.|+.. .+.+ ..+++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~---~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~ 89 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE---GLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN 89 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T---T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred ccccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc---CccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence 4556667888888888888888777 5788888888888887543 477788888888888888743 3334 35788
Q ss_pred CcEEEccCCCCCCCC-hhhhcCCCCCCEEeCcCCcCcccc--chhhhhCCCCCcEEEcc
Q 036932 109 LKVLDISYNQLSGTL-PSAITTLTSLEYLALLDNNFEGTF--LLNSLANHSKLEVLLLS 164 (790)
Q Consensus 109 L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~l~~l~~L~~L~L~ 164 (790)
|++|++++|+|...- -..+..+++|++|++.+|.++..- ....+..+++|+.||-.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 888888888886432 145677888888888888776321 12356778888888754
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=8.1e-11 Score=109.83 Aligned_cols=121 Identities=27% Similarity=0.284 Sum_probs=40.1
Q ss_pred cCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccC-CCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCC
Q 036932 43 LSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVC-ELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG 121 (790)
Q Consensus 43 Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~ 121 (790)
+..+.|...+.+.+...+++|+|.+|.|..+. .+. .+.+|+.|++++|.|... +.+..+++|++|++++|+|+.
T Consensus 4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie---~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~ 78 (175)
T PF14580_consen 4 LTANMIEQIAQYNNPVKLRELNLRGNQISTIE---NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS 78 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S
T ss_pred cccccccccccccccccccccccccccccccc---chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc
Confidence 44556666677888889999999999998542 344 578999999999999854 358889999999999999996
Q ss_pred CChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCC
Q 036932 122 TLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTN 168 (790)
Q Consensus 122 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~ 168 (790)
+.+.....+++|++|++++|++...-....++.+++|+.|++.+|+.
T Consensus 79 i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp -CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 54433357899999999999987544334566777777777777653
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=7.9e-11 Score=119.82 Aligned_cols=208 Identities=21% Similarity=0.213 Sum_probs=128.1
Q ss_pred CCccceEEeCCCCCCCCcc--hhhhCCCCCCEEEccCCCCCCcCc-hhHhhCCCCCcEEeccCCcccccccCC-CCCCCC
Q 036932 179 PTFQLKVLGLPNYNLKVIP--SFLLHQYDLKLLDLSGNNLVGDFP-TWVLRNNTKLEALFLTNNSFTGNLQLP-KTKHDF 254 (790)
Q Consensus 179 ~~~~L~~L~l~~n~l~~lp--~~l~~l~~L~~L~Ls~n~l~~~ip-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~ 254 (790)
++.+|+++.+.++.....+ .....|++++.|||+.|-+..-.+ ..+.+.+++|+.|+++.|.+....... ...++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3456777777777776555 366778888899999887763222 234557888888888888876432222 225677
Q ss_pred CCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccCh-hhhhcCCcCcEEE
Q 036932 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPA-PLLTGCISLGLLD 333 (790)
Q Consensus 255 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~ 333 (790)
|+.|.++.|.++-.--.++...+|+|+.|++..|.....-......+..|+.|||++|++. ..+. .....++.|..|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhh
Confidence 8888888888862222233345788888888888533333444445677888888888776 3331 2234567777777
Q ss_pred ccCCcCccccccc------ccCCCCCcEEEcCCcccccccc--cccCCCCCCcEEEcccccCc
Q 036932 334 LSGNNFYGQIFPK------YMNLTQLEFLYLENNKFSGKIE--EGLSNSNELNELDISNNLLS 388 (790)
Q Consensus 334 L~~n~l~~~~~~~------~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~ 388 (790)
++.+.+...-... ...+++|++|++..|++. .++ ..+..+++|+.|.+..|.++
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 7777776442221 134566777777776664 121 12334455555555555554
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.05 E-value=3.7e-11 Score=118.99 Aligned_cols=114 Identities=23% Similarity=0.259 Sum_probs=61.0
Q ss_pred hhccCCCCCEEecCCccccCcccccc-----cccccceeeccCCcCccc----cc---------hhhcCCCCCcEEeccC
Q 036932 419 QLLNHGSLNLLSVSENCLSGPMTSSF-----NLSSLEHLYLQMNSLSGP----IP---------IALFRSSNLITLDLRD 480 (790)
Q Consensus 419 ~~~~~~~L~~L~l~~n~l~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~p---------~~~~~~~~L~~L~L~~ 480 (790)
++..++.|+++|||+|-+.-..+..+ .+.+|++|+|.+|.+.-. +. .....-+.|+++..++
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 33445555555555555543333222 455566666666655311 00 1122335677777777
Q ss_pred Cccccc----CchhhhcCccccEEeccCcccccc----CCccccCCCCCCEEEccCCcCc
Q 036932 481 NRFSGV----IPHQISESLTLRFLLLRGNYLEGQ----IPNQLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 481 N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~ 532 (790)
|++... +...+...+.|+.+.+..|.|... +...+..+++|++|||.+|.++
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence 776532 223345556677777777766321 2334566777777777777765
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=5.2e-11 Score=114.96 Aligned_cols=130 Identities=28% Similarity=0.306 Sum_probs=92.0
Q ss_pred ccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccc
Q 036932 495 LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNS 574 (790)
Q Consensus 495 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 574 (790)
+.|+++||++|.|+ .+.++..-++.++.|++|+|.|. .+.. +
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-L----------------------------------- 325 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-L----------------------------------- 325 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-h-----------------------------------
Confidence 45777777777777 55666666778888888888776 1110 0
Q ss_pred cccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCc
Q 036932 575 TFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPG 653 (790)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~ 653 (790)
+.+++|+.||||+|.++ ++-.+-..+- ++.|+|+.|.|... +
T Consensus 326 ----------------------------------a~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--S 368 (490)
T KOG1259|consen 326 ----------------------------------AELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--S 368 (490)
T ss_pred ----------------------------------hhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--h
Confidence 12567788888888876 3332222332 78888898887632 3
Q ss_pred cccCCCCCCEEEccCCccccc-CCccccCCCCCCeEecccCcceecC
Q 036932 654 SFSNLKWIESLDLSHNRLSGQ-VPPRLTELNFLSNFNVSFNNLSGLI 699 (790)
Q Consensus 654 ~l~~l~~L~~LdLs~N~lsg~-ip~~l~~l~~L~~L~ls~N~l~g~i 699 (790)
.++++-+|..||+++|+|... .-.++++++.|+.+-|.+|++.+.+
T Consensus 369 GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 369 GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 567888999999999999742 2357889999999999999998754
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=8.1e-11 Score=116.61 Aligned_cols=196 Identities=25% Similarity=0.288 Sum_probs=116.1
Q ss_pred cCCcCcEEEccCCcCcccccccc----cCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccC
Q 036932 325 GCISLGLLDLSGNNFYGQIFPKY----MNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSS 400 (790)
Q Consensus 325 ~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~ 400 (790)
++++|++++||+|.+....++.| ..++.|++|.|.+|.+...--..++ ..|..|. .++. .+.-+.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~--~~kk-------~~~~~~ 158 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA--VNKK-------AASKPK 158 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH--HHhc-------cCCCcc
Confidence 55677777777777654444332 3456666666666655421111100 0011111 0110 011112
Q ss_pred CCeEEEccCcccccc----chhhhccCCCCCEEecCCccccCccc----ccc-cccccceeeccCCcCccc----cchhh
Q 036932 401 DLKVLLMSKMFLKGN----IPAQLLNHGSLNLLSVSENCLSGPMT----SSF-NLSSLEHLYLQMNSLSGP----IPIAL 467 (790)
Q Consensus 401 ~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~-~l~~L~~L~L~~n~l~~~----~p~~~ 467 (790)
|+++....|++... +...+..++.|+.+.++.|.+..... ..+ .+++|+.|||..|-|+.. +...+
T Consensus 159 -Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 159 -LRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred -eEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 55555555555422 33445566777777777777753322 122 677888888888877632 34566
Q ss_pred cCCCCCcEEeccCCcccccCchhh-----hcCccccEEeccCcccccc----CCccccCCCCCCEEEccCCcCc
Q 036932 468 FRSSNLITLDLRDNRFSGVIPHQI-----SESLTLRFLLLRGNYLEGQ----IPNQLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 468 ~~~~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~ 532 (790)
..+++|++|++++|.+......++ ...++|++|.+.+|.++.. +...+...+.|..|+|++|.+.
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 777888899999988876554444 2468899999999988642 2334556788999999999984
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=1.2e-10 Score=118.64 Aligned_cols=210 Identities=24% Similarity=0.178 Sum_probs=153.2
Q ss_pred cCCCCCCEEEcCCCCCCccc---cCcCCCCCCEEeCCCCCCCCCcCc-cccCCCCCCCEEecCCCcCcccCCccc-CCCC
Q 036932 33 ANLTNLKILDLSGCGITTLQ---GLTKLKNLEALDLSYNNISGSSES-QGVCELKNLSEFILRGINIKGHLPDCL-KNLS 107 (790)
Q Consensus 33 ~~l~~L~~L~Ls~n~i~~~~---~l~~l~~L~~L~Ls~n~i~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~ 107 (790)
+++++|+.+.|.++.+..+. -...|++++.||||+|-+....+. .....+++|+.|+|+.|.+..-..... ..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 46888999999988888554 477899999999999987744332 235678999999999998763322222 3578
Q ss_pred CCcEEEccCCCCCCC-ChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEE
Q 036932 108 HLKVLDISYNQLSGT-LPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVL 186 (790)
Q Consensus 108 ~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L 186 (790)
+|+.|.|+.|.++.. +......+|+|+.|+|..|... .+.......++.|+.|||++|+++..-.......++.|..|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~-~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII-LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc-ceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 899999999998732 2234567899999999998532 22334456678899999999988766666677788899999
Q ss_pred eCCCCCCCC--cchh-----hhCCCCCCEEEccCCCCCCcCch-hHhhCCCCCcEEeccCCccccc
Q 036932 187 GLPNYNLKV--IPSF-----LLHQYDLKLLDLSGNNLVGDFPT-WVLRNNTKLEALFLTNNSFTGN 244 (790)
Q Consensus 187 ~l~~n~l~~--lp~~-----l~~l~~L~~L~Ls~n~l~~~ip~-~~~~~l~~L~~L~L~~n~l~~~ 244 (790)
+++.+.+.. +|+. ....++|++|+++.|++. ..++ .-...+++|+.|.+..|.++..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccccc
Confidence 999999854 3443 456789999999999885 3332 1122567788888888888754
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=7.3e-10 Score=107.13 Aligned_cols=128 Identities=25% Similarity=0.224 Sum_probs=98.4
Q ss_pred CeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCC
Q 036932 402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN 481 (790)
Q Consensus 402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N 481 (790)
|+.+|+++|.++ .+.+++.-.|.++.|++++|.+..... ...+++|+.|||++|.++ .+..+=..+-+.+.|.|+.|
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhh
Confidence 788888888776 566667777888888999888875443 226788999999999887 45555556678889999999
Q ss_pred cccccCchhhhcCccccEEeccCccccccC-CccccCCCCCCEEEccCCcCccc
Q 036932 482 RFSGVIPHQISESLTLRFLLLRGNYLEGQI-PNQLCQLRRLGVLDLSHNRISGS 534 (790)
Q Consensus 482 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~Ls~N~l~g~ 534 (790)
.+... ..+..+-+|..||+++|+|...- -..+++++.|+.+.|.+|++.+.
T Consensus 363 ~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 363 KIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 88643 55677788899999999986432 34578899999999999999843
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.83 E-value=3.2e-09 Score=124.04 Aligned_cols=132 Identities=25% Similarity=0.291 Sum_probs=106.7
Q ss_pred hcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCC--CCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCC
Q 036932 32 FANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNN--ISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHL 109 (790)
Q Consensus 32 ~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (790)
..+....|...+-+|.+..+..-..++.|++|-+.+|. +. .+....|..++.|+.|||++|.=.+.+|..++++-+|
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred ccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 34557788888888888866666667789999999986 43 3333458889999999999987777899999999999
Q ss_pred cEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCC
Q 036932 110 KVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166 (790)
Q Consensus 110 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n 166 (790)
|+|+++++.+. .+|..+++++.|.+|++..+.-...+ +.....+++|++|.+...
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRS 652 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeecc
Confidence 99999999998 88999999999999999888755344 356667899999988754
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3.5e-09 Score=81.11 Aligned_cols=59 Identities=42% Similarity=0.555 Sum_probs=49.0
Q ss_pred ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcc
Q 036932 637 IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNL 695 (790)
Q Consensus 637 L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l 695 (790)
|+.|++++|+|+...++.|.++++|+.||+++|+|+...|..|..+++|++|++++|+|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 67788888888866667888888888888888888888888888888888888888875
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=1.9e-09 Score=118.09 Aligned_cols=190 Identities=31% Similarity=0.334 Sum_probs=112.7
Q ss_pred cceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCcccc-CcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCC
Q 036932 15 KWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQG-LTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93 (790)
Q Consensus 15 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 93 (790)
+++.+..+.+..+ ...+..+++|+.|++.+|+|..+.. +..+++|++|++++|.|+... .+..++.|+.|++++|
T Consensus 75 ~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~---~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 75 KELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE---GLSTLTLLKELNLSGN 150 (414)
T ss_pred Hhhccchhhhhhh-hcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc---chhhccchhhheeccC
Confidence 3444444444442 2346777888888888888887766 777888888888888887553 3666667888888888
Q ss_pred cCcccCCcccCCCCCCcEEEccCCCCCCCCh-hhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCccc
Q 036932 94 NIKGHLPDCLKNLSHLKVLDISYNQLSGTLP-SAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSV 172 (790)
Q Consensus 94 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 172 (790)
.|... ..+..++.|+.+++++|++..+-+ . ...+.+++.+++.+|.+...- .+..+..+..+++..|......
T Consensus 151 ~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~---~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 151 LISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE---GLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred cchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc---chHHHHHHHHhhcccccceecc
Confidence 77643 345567788888888888775433 2 467777788888877765221 2233333333344444321111
Q ss_pred ccCCCCCCc--cceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCC
Q 036932 173 KTENFLPTF--QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLV 217 (790)
Q Consensus 173 ~~~~~~~~~--~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 217 (790)
...... +|+.+++++|.+..++..+..+..+..|++..|.+.
T Consensus 225 ---~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 225 ---GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ---CcccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 111111 255555666655554444444555555555555444
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1.2e-08 Score=78.10 Aligned_cols=60 Identities=35% Similarity=0.494 Sum_probs=38.8
Q ss_pred CCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcC
Q 036932 472 NLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRI 531 (790)
Q Consensus 472 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l 531 (790)
+|++|++++|+++...+.+|..+++|++|++++|+++...|..|..+++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 566666666666655555666666666666666666666666666666666666666653
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=3.8e-09 Score=115.71 Aligned_cols=248 Identities=26% Similarity=0.227 Sum_probs=138.7
Q ss_pred cccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEE
Q 036932 277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFL 356 (790)
Q Consensus 277 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 356 (790)
+..++.+.+..|.+.. +-..+..+.+|+.|++..|++. .+... ...+++|++|++++|.|+... .+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccccc--chhhccchhhh
Confidence 3444444455554442 2222444555555555555554 33221 234555666666666555432 23344456666
Q ss_pred EcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932 357 YLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL 436 (790)
Q Consensus 357 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 436 (790)
++.+|.++.. ..+..++.|+.+++++|++...-+.....+.. ++.+.+.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~-l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELIS-LEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccc-hHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 6666665422 23444566666666666665322200233333 66666666655422 2222233444446677766
Q ss_pred cCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCcccccc---CC
Q 036932 437 SGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQ---IP 512 (790)
Q Consensus 437 ~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~---~~ 512 (790)
+..-+... ....|+.+++++|.+. .++..+..+..+..+++.+|++... ..+...+.+..+....|.+... ..
T Consensus 221 ~~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (414)
T KOG0531|consen 221 SKLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ 297 (414)
T ss_pred eeccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence 64333221 1113788899999887 4446677788899999999988754 3455666777778888876522 22
Q ss_pred cc-ccCCCCCCEEEccCCcCcccCCh
Q 036932 513 NQ-LCQLRRLGVLDLSHNRISGSIPS 537 (790)
Q Consensus 513 ~~-l~~l~~L~~L~Ls~N~l~g~~p~ 537 (790)
.. ....+.++...+..|.+....+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 298 EYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred cccccccccccccccccCcccccccc
Confidence 22 55678889999999998865553
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.59 E-value=7.1e-08 Score=112.87 Aligned_cols=273 Identities=23% Similarity=0.220 Sum_probs=154.2
Q ss_pred CCCcEEeccCCcccccccCCCCCCCCCCEEEeecCC--CCccCChhHHhhcccccEecccCCccccccchhhhccccccc
Q 036932 229 TKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNN--LTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIF 306 (790)
Q Consensus 229 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 306 (790)
...+...+.+|.+.... ....++.|++|-+..|. +. .++..+|..++.|+.||+++|.--+.+|..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 45566666666554431 12244567788777775 44 677777777888888888877666678888888888888
Q ss_pred ccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCccc--ccccccccCCCCCCcEEEccc
Q 036932 307 LRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKF--SGKIEEGLSNSNELNELDISN 384 (790)
Q Consensus 307 L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~ 384 (790)
|++++..+. .+|..+ .++.+|.+|++..+.-...++.....+++|++|.+..-.. +...-..+..+..|+.+....
T Consensus 600 L~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 888888887 777765 5777888888887766555555556678888887765431 112222334455555555433
Q ss_pred ccCcCCCchhhhh---ccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc------c-ccccceeec
Q 036932 385 NLLSGHIPHWIGN---FSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF------N-LSSLEHLYL 454 (790)
Q Consensus 385 n~l~~~~p~~~~~---~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~------~-l~~L~~L~L 454 (790)
.... +-..+.. +....+.+.+..+. ....+..+..+.+|+.|.+.++.+........ . ++++..+..
T Consensus 678 ~s~~--~~e~l~~~~~L~~~~~~l~~~~~~-~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSVL--LLEDLLGMTRLRSLLQSLSIEGCS-KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chhH--hHhhhhhhHHHHHHhHhhhhcccc-cceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 2220 0011111 11101122222211 12344555667777778777777654322211 1 223333333
Q ss_pred cCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCcccccc
Q 036932 455 QMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQ 510 (790)
Q Consensus 455 ~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 510 (790)
.++..- ..+....-.++|+.|.+..++....+......+..+..+.+..+.+.+.
T Consensus 755 ~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 755 LNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred hccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 333322 1233333456788888887776655555555555566555555555544
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.40 E-value=2.1e-08 Score=86.13 Aligned_cols=85 Identities=24% Similarity=0.257 Sum_probs=49.7
Q ss_pred cceEEECCCCcccccCChhhhhce--ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932 613 YMVGLDLSCNQLTGGIPSEIGDLQ--IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV 690 (790)
Q Consensus 613 ~L~~L~Ls~N~l~g~ip~~~~~l~--L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l 690 (790)
.|+.++|++|.|. ..|+.+.... ++.|||++|.|+ .+|.+++.++.|+.|+++.|.+. ..|.-+..|.+|.+||.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 4555666666665 4555554432 666666666666 55666666666666666666665 44555555666666666
Q ss_pred ccCcceecCCC
Q 036932 691 SFNNLSGLIPD 701 (790)
Q Consensus 691 s~N~l~g~iP~ 701 (790)
-.|... +||.
T Consensus 131 ~~na~~-eid~ 140 (177)
T KOG4579|consen 131 PENARA-EIDV 140 (177)
T ss_pred CCCccc-cCcH
Confidence 555543 4443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=8e-08 Score=93.35 Aligned_cols=179 Identities=21% Similarity=0.164 Sum_probs=96.0
Q ss_pred CCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCC-CCccCChhHHhhcccccEe
Q 036932 205 DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNN-LTGKLPEDMGIILQKLLYI 283 (790)
Q Consensus 205 ~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L 283 (790)
.|+.+||+...++..--..+...|.+|+.|.+.++.+.+.+.........|+.|+++.+. ++..--..++..++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466666666655533333445556666666666666665544445556666666666653 3322222344456677777
Q ss_pred cccCCccccccchh-hhc-ccccccccCcccccc--cccChhhhhcCCcCcEEEccCCc-CcccccccccCCCCCcEEEc
Q 036932 284 DMSDNRFEGYLPSS-IGE-MKALIFLRLPKNNFS--GELPAPLLTGCISLGLLDLSGNN-FYGQIFPKYMNLTQLEFLYL 358 (790)
Q Consensus 284 ~Ls~n~l~~~~p~~-l~~-l~~L~~L~Ls~n~l~--~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 358 (790)
+++-|.+....-.. +.. -++|+.|+++++.-. ..--+.+...+++|.+|||++|. ++......|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 77777654322111 111 235666676665311 01112233567777777777664 33333345566777777777
Q ss_pred CCcccccccccc---cCCCCCCcEEEcccc
Q 036932 359 ENNKFSGKIEEG---LSNSNELNELDISNN 385 (790)
Q Consensus 359 ~~n~l~~~~~~~---~~~l~~L~~L~Ls~n 385 (790)
+.|.. ++|.. +...++|.+||+.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 77653 34432 345566666666554
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=8.7e-08 Score=93.12 Aligned_cols=177 Identities=23% Similarity=0.235 Sum_probs=103.3
Q ss_pred ccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcc-cccc-cccccCCCCCCcEE
Q 036932 303 ALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNK-FSGK-IEEGLSNSNELNEL 380 (790)
Q Consensus 303 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L 380 (790)
.|+++||++..++..--..+.+.|++|+.|.+.++++...+...+..-.+|+.++++.+. ++.. ..--+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477788877776633333455678888888888888887777777778888888888764 3311 11234667888888
Q ss_pred EcccccCcCCC-chhhhhccCCCeEEEccCccc---cccchhhhccCCCCCEEecCCccc-cCcccccc-cccccceeec
Q 036932 381 DISNNLLSGHI-PHWIGNFSSDLKVLLMSKMFL---KGNIPAQLLNHGSLNLLSVSENCL-SGPMTSSF-NLSSLEHLYL 454 (790)
Q Consensus 381 ~Ls~n~l~~~~-p~~~~~~~~~L~~L~l~~n~l---~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~-~l~~L~~L~L 454 (790)
+++.|.+.... ...+.....+++.|+++++.- ...+..-...|++|..|||++|.. +......+ +++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88888765332 222333444477777766532 222333344566777777766543 22111122 5666666666
Q ss_pred cCCcCccccchhh---cCCCCCcEEeccCC
Q 036932 455 QMNSLSGPIPIAL---FRSSNLITLDLRDN 481 (790)
Q Consensus 455 ~~n~l~~~~p~~~---~~~~~L~~L~L~~N 481 (790)
+.|.. .+|..+ ...++|.+||+.++
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 66653 334332 33455555555443
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.14 E-value=1.2e-06 Score=84.13 Aligned_cols=240 Identities=19% Similarity=0.194 Sum_probs=126.3
Q ss_pred hhcCCCCCCEEEcCCCCCCc------cccCcCCCCCCEEeCCCCCCCCCcC---------ccccCCCCCCCEEecCCCcC
Q 036932 31 GFANLTNLKILDLSGCGITT------LQGLTKLKNLEALDLSYNNISGSSE---------SQGVCELKNLSEFILRGINI 95 (790)
Q Consensus 31 ~~~~l~~L~~L~Ls~n~i~~------~~~l~~l~~L~~L~Ls~n~i~~~~~---------~~~~~~l~~L~~L~L~~n~l 95 (790)
.+..+..++.+|||+|.|.. -..+.+-++|+..+++.-......+ ..++.+|++|+..+||+|-+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34456777888888887761 1235566777777776542211100 11334445555555555544
Q ss_pred cccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccch-------------hhhhCCCCCcEEE
Q 036932 96 KGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLL-------------NSLANHSKLEVLL 162 (790)
Q Consensus 96 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------------~~l~~l~~L~~L~ 162 (790)
....|+.++ +.+++-+.|++|.+++|.+- .+.- ...++-+.|++++
T Consensus 105 g~~~~e~L~--------------------d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 105 GSEFPEELG--------------------DLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred CcccchHHH--------------------HHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 433322110 12333444555555444431 1110 1123345666666
Q ss_pred ccCCCCCcccc---cCCCCCCccceEEeCCCCCCCC--cc----hhhhCCCCCCEEEccCCCCCCcCchhH---hhCCCC
Q 036932 163 LSSRTNMLSVK---TENFLPTFQLKVLGLPNYNLKV--IP----SFLLHQYDLKLLDLSGNNLVGDFPTWV---LRNNTK 230 (790)
Q Consensus 163 L~~n~~~~~~~---~~~~~~~~~L~~L~l~~n~l~~--lp----~~l~~l~~L~~L~Ls~n~l~~~ip~~~---~~~l~~ 230 (790)
...|.+..... ...+.....|+.+.+..|.|.. +. ..++.+.+|+.|||..|.++-.....+ ....+.
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 66665422111 1122233477888888888731 21 234567899999999998874333222 234566
Q ss_pred CcEEeccCCcccccccCC------CCCCCCCCEEEeecCCCCccCChhH------HhhcccccEecccCCccc
Q 036932 231 LEALFLTNNSFTGNLQLP------KTKHDFLHHLDVSNNNLTGKLPEDM------GIILQKLLYIDMSDNRFE 291 (790)
Q Consensus 231 L~~L~L~~n~l~~~~~~~------~~~~~~L~~L~Ls~n~l~~~~p~~~------~~~l~~L~~L~Ls~n~l~ 291 (790)
|+.|.+.+|.++...... ....++|..|...+|...+.+-..+ ...++-|..|.+.+|++.
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 899999999877532221 1256788888888887764433221 123344445555555544
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.13 E-value=1e-07 Score=103.25 Aligned_cols=128 Identities=27% Similarity=0.291 Sum_probs=93.7
Q ss_pred CCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEE
Q 036932 253 DFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLL 332 (790)
Q Consensus 253 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L 332 (790)
..|.+.+.++|.+. .+...+ ..++.++.|+|++|+++... .+..+++|++|||++|.+. .+|..--.+|. |+.|
T Consensus 164 n~L~~a~fsyN~L~-~mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heee
Confidence 34677788888886 555555 34788999999999887433 7788889999999999887 77754333444 8899
Q ss_pred EccCCcCcccccccccCCCCCcEEEcCCccccccc-ccccCCCCCCcEEEcccccCc
Q 036932 333 DLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKI-EEGLSNSNELNELDISNNLLS 388 (790)
Q Consensus 333 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~ 388 (790)
.+.+|.++.. ..+.++.+|+.||+++|-+.+.- -..++.+..|+.|.|.+|++-
T Consensus 238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999888642 35678888899999988776421 123455677888888888774
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.12 E-value=1.2e-07 Score=102.60 Aligned_cols=196 Identities=23% Similarity=0.208 Sum_probs=129.7
Q ss_pred CCCCCEEEeecCCCCccC-ChhHHhhcccccEecccCCccccccchhhhcc-cccccccCcccccc----------cccC
Q 036932 252 HDFLHHLDVSNNNLTGKL-PEDMGIILQKLLYIDMSDNRFEGYLPSSIGEM-KALIFLRLPKNNFS----------GELP 319 (790)
Q Consensus 252 ~~~L~~L~Ls~n~l~~~~-p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~----------~~i~ 319 (790)
+++++.+.+-.-.-.+.. |-.++. +.+|++|.+.+|.+.. ...+..+ .+|++|-..+ .+. |.+.
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifp-F~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFP-FRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLDALRHVFASCGGDIS 158 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceecc-ccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccc
Confidence 445555555443322222 555654 7899999999998863 1222221 1233332211 111 1221
Q ss_pred hhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhcc
Q 036932 320 APLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFS 399 (790)
Q Consensus 320 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~ 399 (790)
... .--.|.+.+.++|.+. ....++.-++.++.|+|++|+++.. +.+..++.|++|||++|.+. .+|..-..-.
T Consensus 159 ns~--~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc 232 (1096)
T KOG1859|consen 159 NSP--VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC 232 (1096)
T ss_pred cch--hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh
Confidence 111 1125778888899886 3445667788999999999999743 37888999999999999998 5554322223
Q ss_pred CCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc--cccccceeeccCCcCc
Q 036932 400 SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF--NLSSLEHLYLQMNSLS 460 (790)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~L~~n~l~ 460 (790)
+ |+.|.+++|.++. -..+.++.+|+-||+++|-+.+.-.-.+ .+..|+.|+|.+|.+-
T Consensus 233 ~-L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 233 K-LQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred h-heeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 3 9999999998863 3457788899999999999987544333 7889999999999874
No 49
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.06 E-value=9.5e-07 Score=76.11 Aligned_cols=131 Identities=23% Similarity=0.346 Sum_probs=82.8
Q ss_pred ceEEeCCCCCCCCcchhhhC---CCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEE
Q 036932 183 LKVLGLPNYNLKVIPSFLLH---QYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLD 259 (790)
Q Consensus 183 L~~L~l~~n~l~~lp~~l~~---l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 259 (790)
+..+++++|.+..+++.... ...|+..+|++|.+. .+|..+.. .++.++.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~------------------------kf~t~t~lN 83 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTI------------------------KFPTATTLN 83 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhh------------------------ccchhhhhh
Confidence 34455566666555554333 334555566666665 55544332 344566777
Q ss_pred eecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcC
Q 036932 260 VSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNF 339 (790)
Q Consensus 260 Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l 339 (790)
+++|.++ .+|..+ ..++.|+.|+++.|.+. ..|..+..+.++..|+..+|... ++|-+.+. -+..-..++..+.+
T Consensus 84 l~~neis-dvPeE~-Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~-s~~~al~~lgnepl 158 (177)
T KOG4579|consen 84 LANNEIS-DVPEEL-AAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFY-SSLPALIKLGNEPL 158 (177)
T ss_pred cchhhhh-hchHHH-hhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhc-cccHHHHHhcCCcc
Confidence 7777777 788885 45889999999999888 67777878888888998888887 77776542 12222233455555
Q ss_pred cccc
Q 036932 340 YGQI 343 (790)
Q Consensus 340 ~~~~ 343 (790)
.+..
T Consensus 159 ~~~~ 162 (177)
T KOG4579|consen 159 GDET 162 (177)
T ss_pred cccC
Confidence 4433
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.03 E-value=1.2e-06 Score=84.19 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=15.4
Q ss_pred hCCCCCCEEEccCCCCCCcCchhHh
Q 036932 201 LHQYDLKLLDLSGNNLVGDFPTWVL 225 (790)
Q Consensus 201 ~~l~~L~~L~Ls~n~l~~~ip~~~~ 225 (790)
..+..++.++||+|.+...-..|+.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~ 51 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELC 51 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHH
Confidence 3355677777777777655445543
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=1e-06 Score=85.85 Aligned_cols=85 Identities=27% Similarity=0.310 Sum_probs=43.1
Q ss_pred CCCCCEEecCCCcCcc--cCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCc
Q 036932 82 LKNLSEFILRGINIKG--HLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLE 159 (790)
Q Consensus 82 l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 159 (790)
.++++++||.+|.|+. .+...+.++|.|++|+|+.|++...+...-..+.+|++|-|.+..+.-......+..+++++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3455555555555542 22223455666666666666665332211123456666666555544333333455566666
Q ss_pred EEEccCC
Q 036932 160 VLLLSSR 166 (790)
Q Consensus 160 ~L~L~~n 166 (790)
.|+++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 6666655
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.1e-05 Score=56.46 Aligned_cols=36 Identities=42% Similarity=0.673 Sum_probs=17.6
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCeEecccCcce
Q 036932 660 WIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLS 696 (790)
Q Consensus 660 ~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~ 696 (790)
+|++|++++|+|+ .+|..++.|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33444555555555555555544
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=8.7e-06 Score=79.52 Aligned_cols=64 Identities=17% Similarity=0.122 Sum_probs=27.9
Q ss_pred cccccEecccCCccccc-cchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCc
Q 036932 277 LQKLLYIDMSDNRFEGY-LPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFY 340 (790)
Q Consensus 277 l~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 340 (790)
++++..+.+..|.+... ..+....++.+.-|+|+.+++...-.-+...++++|..|.++++.+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 34555555555544321 11222334444455555555542222223344555555555555543
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.3e-05 Score=56.00 Aligned_cols=36 Identities=39% Similarity=0.609 Sum_probs=29.6
Q ss_pred ecceeccCCccccccCccccCCCCCCEEEccCCcccc
Q 036932 637 IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSG 673 (790)
Q Consensus 637 L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg 673 (790)
|++|++++|+|+ .+|..+++|++|+.||+++|+|+.
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 678888999988 567779999999999999999984
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=7.1e-06 Score=93.86 Aligned_cols=159 Identities=24% Similarity=0.300 Sum_probs=83.8
Q ss_pred CCCCEEeCCCCCCCCCcCcc-ccCCCCCCCEEecCCCcCccc-CCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCE
Q 036932 58 KNLEALDLSYNNISGSSESQ-GVCELKNLSEFILRGINIKGH-LPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEY 135 (790)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 135 (790)
.+|++||+++...-...+.. .-..+|.|+.|.+++-.+... ......++++|..||+|+++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 45666666665443221111 123456666666666555321 122334566667777776666633 45666666666
Q ss_pred EeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCC
Q 036932 136 LALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNN 215 (790)
Q Consensus 136 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~ 215 (790)
|.+.+-.+........+.++++|++||+|......... . +...-+.-..+|.|+.||.|++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~---------i---------i~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK---------I---------IEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH---------H---------HHHHHHhcccCccccEEecCCcc
Confidence 66666555543333455566666666666543211100 0 00000111236778888888887
Q ss_pred CCCcCchhHhhCCCCCcEEec
Q 036932 216 LVGDFPTWVLRNNTKLEALFL 236 (790)
Q Consensus 216 l~~~ip~~~~~~l~~L~~L~L 236 (790)
+.+.+-+.+...-++|+.+..
T Consensus 262 i~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 262 INEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred hhHHHHHHHHHhCccHhhhhh
Confidence 776666555555555554443
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.67 E-value=0.00011 Score=66.02 Aligned_cols=126 Identities=19% Similarity=0.296 Sum_probs=68.0
Q ss_pred eeChhhhcCCCCCCEEEcCCCCCCccc--cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCccc
Q 036932 26 FFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCL 103 (790)
Q Consensus 26 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 103 (790)
.+...+|.++++|+.+.+.. .+..+. +|..+++|+.+++..+ +... ...+|..+++|+.+.+.+ .+.......|
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTT
T ss_pred EECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccc-ceeeeecccccccccccc-cccccccccc
Confidence 56778899999999999885 455443 5888888999998875 5533 345678887888888876 4444455677
Q ss_pred CCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCc
Q 036932 104 KNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLE 159 (790)
Q Consensus 104 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~ 159 (790)
.++++|+.+++..+ +..+....|.++ +|+.+.+.. .+. .++...|.++++|+
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKLK 129 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG------
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccCC
Confidence 88888888888765 554445567776 888887765 332 34555666666553
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.60 E-value=0.00011 Score=68.26 Aligned_cols=103 Identities=29% Similarity=0.404 Sum_probs=45.4
Q ss_pred CEEEcCCCCCCccccCcC-CCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCC
Q 036932 39 KILDLSGCGITTLQGLTK-LKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYN 117 (790)
Q Consensus 39 ~~L~Ls~n~i~~~~~l~~-l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 117 (790)
+.++|.+.++..+..++. ..+...+||++|.+... ..|..+++|.+|.|++|+|+.+-|.--.-+++|+.|.|.+|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 344444444443332221 23344555555554422 13444455555555555555433333333445555555555
Q ss_pred CCCCCC-hhhhcCCCCCCEEeCcCCcCc
Q 036932 118 QLSGTL-PSAITTLTSLEYLALLDNNFE 144 (790)
Q Consensus 118 ~i~~~~-~~~~~~l~~L~~L~Ls~n~l~ 144 (790)
+|.... -.-+..|++|++|.+-+|..+
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchh
Confidence 554211 012344555555555555443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.58 E-value=0.00023 Score=75.11 Aligned_cols=74 Identities=14% Similarity=0.250 Sum_probs=48.4
Q ss_pred cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCc-cccccCCccccCCCCCCE
Q 036932 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN-YLEGQIPNQLCQLRRLGV 523 (790)
Q Consensus 445 ~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~ 523 (790)
.+.+++.|++++|.++ .+| . -..+|+.|.+++|.--..+|..+. ++|+.|++++| .+. .+| +.|+.
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLP-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccC-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------cccce
Confidence 4678888888888877 556 2 234688888887544345665442 47888888887 443 344 34667
Q ss_pred EEccCCcC
Q 036932 524 LDLSHNRI 531 (790)
Q Consensus 524 L~Ls~N~l 531 (790)
|+++.|..
T Consensus 117 L~L~~n~~ 124 (426)
T PRK15386 117 LEIKGSAT 124 (426)
T ss_pred EEeCCCCC
Confidence 77766654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.57 E-value=0.00013 Score=67.62 Aligned_cols=108 Identities=25% Similarity=0.225 Sum_probs=75.6
Q ss_pred CCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCE
Q 036932 56 KLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEY 135 (790)
Q Consensus 56 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 135 (790)
+...=+.++|.+.++..+.. -=..+.+...+||++|++... +.|..+++|.+|.|.+|+|+.+.|.--.-+++|+.
T Consensus 17 ~~~~e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~ 92 (233)
T KOG1644|consen 17 NSVRERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKT 92 (233)
T ss_pred hhccccccccccccccchhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccce
Confidence 33335677777777753221 111234677899999988743 46888999999999999999887876667788999
Q ss_pred EeCcCCcCccccchhhhhCCCCCcEEEccCCC
Q 036932 136 LALLDNNFEGTFLLNSLANHSKLEVLLLSSRT 167 (790)
Q Consensus 136 L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 167 (790)
|.|.+|.+...-....++.|++|++|.+-+|+
T Consensus 93 L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 93 LILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred EEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 99999988643223345666777777666654
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.44 E-value=6.2e-06 Score=84.40 Aligned_cols=298 Identities=16% Similarity=0.072 Sum_probs=146.3
Q ss_pred CCCEEecCCCcCcccCC--cccCCCCCCcEEEccCCCC-CCCC-hhhhcCCCCCCEEeCcCC-cCccccchhhhhCCCCC
Q 036932 84 NLSEFILRGINIKGHLP--DCLKNLSHLKVLDISYNQL-SGTL-PSAITTLTSLEYLALLDN-NFEGTFLLNSLANHSKL 158 (790)
Q Consensus 84 ~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~i-~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~l~~L 158 (790)
.|+.|.+.++.=.+.-+ ..-.+++++++|++.++.. +..- -..-..+++|++|++..+ .++..........+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 56666666664332211 2234567777776666642 1111 112235677777777663 33332222233456777
Q ss_pred cEEEccCCCCCcccccC-CCCCCccceEEeCCCCCCCC---cchhhhCCCCCCEEEccCCC-CCCcCchh-HhhCCCCCc
Q 036932 159 EVLLLSSRTNMLSVKTE-NFLPTFQLKVLGLPNYNLKV---IPSFLLHQYDLKLLDLSGNN-LVGDFPTW-VLRNNTKLE 232 (790)
Q Consensus 159 ~~L~L~~n~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~---lp~~l~~l~~L~~L~Ls~n~-l~~~ip~~-~~~~l~~L~ 232 (790)
++++++++..+..-... -...+..++.+.+.+|.-.. +-..-..+..+..+++..+. ++ ...-| +...+..|+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lT-D~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLT-DEDLWLIACGCHALQ 297 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcccc-chHHHHHhhhhhHhh
Confidence 77777776543331111 11233345555444432211 11111233345555554442 22 22111 223456677
Q ss_pred EEeccCCccccccc-CC-CCCCCCCCEEEeecCC-CCccCChhHHhhcccccEecccCCccccc--cchhhhcccccccc
Q 036932 233 ALFLTNNSFTGNLQ-LP-KTKHDFLHHLDVSNNN-LTGKLPEDMGIILQKLLYIDMSDNRFEGY--LPSSIGEMKALIFL 307 (790)
Q Consensus 233 ~L~L~~n~l~~~~~-~~-~~~~~~L~~L~Ls~n~-l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L 307 (790)
+++.+++...+... .. .....+|+.+.++.++ ++..--..+..+.+.|+.+++..+..... +...-.+++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 77776654322111 11 1255677777777765 23222223344567788888777754311 12222356778888
Q ss_pred cCcccccccccC----hhhhhcCCcCcEEEccCCcCcc-cccccccCCCCCcEEEcCCcccc-c-ccccccCCCCCCcEE
Q 036932 308 RLPKNNFSGELP----APLLTGCISLGLLDLSGNNFYG-QIFPKYMNLTQLEFLYLENNKFS-G-KIEEGLSNSNELNEL 380 (790)
Q Consensus 308 ~Ls~n~l~~~i~----~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~-~~~~~~~~l~~L~~L 380 (790)
.++++.....-. ...-.+...|..+.|+++.... .....+..+++|+.+++.++.-- . .+...-.+++++++.
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 888775431110 1111345668888888876542 22334567788888888877521 1 122223455655554
Q ss_pred Ec
Q 036932 381 DI 382 (790)
Q Consensus 381 ~L 382 (790)
.+
T Consensus 458 a~ 459 (483)
T KOG4341|consen 458 AY 459 (483)
T ss_pred hh
Confidence 43
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.44 E-value=8.5e-06 Score=83.42 Aligned_cols=282 Identities=18% Similarity=0.073 Sum_probs=130.4
Q ss_pred CCCcEEEccCCCCCCCCh--hhhcCCCCCCEEeCcCCcCccc-cchhhhhCCCCCcEEEccCCCCCcccccC-CCCCCcc
Q 036932 107 SHLKVLDISYNQLSGTLP--SAITTLTSLEYLALLDNNFEGT-FLLNSLANHSKLEVLLLSSRTNMLSVKTE-NFLPTFQ 182 (790)
Q Consensus 107 ~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~~ 182 (790)
..|+.|.+++++=.+.-+ ....+++++++|.+.++..... .-...-..+++|+++++..+..+...... .-..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 467888888776544322 3456788888888887753211 11122355778888887765544333222 1123445
Q ss_pred ceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccC--CCCCCCCCCEEEe
Q 036932 183 LKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQL--PKTKHDFLHHLDV 260 (790)
Q Consensus 183 L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~~~L~~L~L 260 (790)
|++++++++.- +++.--..+..+++.++.+.+.+|.-.+.... ....+..+..+++
T Consensus 218 L~~lNlSwc~q----------------------i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 218 LKYLNLSWCPQ----------------------ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred HHHhhhccCch----------------------hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence 55555555432 22211112233444444443333321110000 0112333444444
Q ss_pred ecCCC-CccCChhHHhhcccccEecccCCccc-cccchhhh-cccccccccCcccccccccC-hhhhhcCCcCcEEEccC
Q 036932 261 SNNNL-TGKLPEDMGIILQKLLYIDMSDNRFE-GYLPSSIG-EMKALIFLRLPKNNFSGELP-APLLTGCISLGLLDLSG 336 (790)
Q Consensus 261 s~n~l-~~~~p~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~-~l~~L~~L~Ls~n~l~~~i~-~~~~~~l~~L~~L~L~~ 336 (790)
..+.. +..---.+...+.+|++++.+++.-. ...-.+++ +..+|+.+.++.++--+..- ..+..+++.|+.+++..
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 44421 11100111223456666666665432 11112222 35566666666665221221 12224556677776666
Q ss_pred CcCccc--ccccccCCCCCcEEEcCCccccccc-----ccccCCCCCCcEEEcccccCcC-CCchhhhhccCCCeEEEcc
Q 036932 337 NNFYGQ--IFPKYMNLTQLEFLYLENNKFSGKI-----EEGLSNSNELNELDISNNLLSG-HIPHWIGNFSSDLKVLLMS 408 (790)
Q Consensus 337 n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~~~~~L~~L~l~ 408 (790)
+..... +...-.+++.|+.+.+++|...... ...-..+..++.+.+++++... ..-..+..+.. |+.+++.
T Consensus 356 ~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~-Leri~l~ 434 (483)
T KOG4341|consen 356 CGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN-LERIELI 434 (483)
T ss_pred cceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc-cceeeee
Confidence 654321 1111235667777777766432111 1122344567777777776431 22233344444 7776666
Q ss_pred Ccc
Q 036932 409 KMF 411 (790)
Q Consensus 409 ~n~ 411 (790)
.+.
T Consensus 435 ~~q 437 (483)
T KOG4341|consen 435 DCQ 437 (483)
T ss_pred chh
Confidence 654
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.38 E-value=0.00071 Score=71.49 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=20.9
Q ss_pred cCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCC
Q 036932 103 LKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDN 141 (790)
Q Consensus 103 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 141 (790)
+..+.++++|++++|.++ .+|. --++|++|.++++
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc 82 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENC 82 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCC
Confidence 334677777777777666 3341 1235777777653
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=0.00011 Score=84.27 Aligned_cols=84 Identities=21% Similarity=0.261 Sum_probs=38.9
Q ss_pred CCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCC-CChhhhcCCCCCCE
Q 036932 57 LKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSG-TLPSAITTLTSLEY 135 (790)
Q Consensus 57 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~ 135 (790)
+|.|+.|.+++-.+....-.....++++|..||+|+++++.. ..++++++|+.|.+.+=.+.. ..-..+.+|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455555555554443221112233455555555555555432 344555555555555444432 11223445555555
Q ss_pred EeCcCCc
Q 036932 136 LALLDNN 142 (790)
Q Consensus 136 L~Ls~n~ 142 (790)
||+|...
T Consensus 225 LDIS~~~ 231 (699)
T KOG3665|consen 225 LDISRDK 231 (699)
T ss_pred eeccccc
Confidence 5555443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.36 E-value=0.00024 Score=63.89 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=22.1
Q ss_pred hhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEeccc
Q 036932 222 TWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMS 286 (790)
Q Consensus 222 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls 286 (790)
...|.++++|+.+.+.. .+.......+..+++|+.+.+..+ +. .++...+..+++++.+.+.
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccc
Confidence 33444445555555442 233333333444444555554443 33 4444444444444554443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=5.7e-05 Score=73.28 Aligned_cols=100 Identities=32% Similarity=0.391 Sum_probs=64.0
Q ss_pred CCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccC-CcccCCCCCCcEEE
Q 036932 35 LTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHL-PDCLKNLSHLKVLD 113 (790)
Q Consensus 35 l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 113 (790)
+.+.+.|++.++.+..+.-..+++.|++|.||-|+|+... .+..+++|++|+|..|.|...- -..+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 5566777888887777777777888888888888777543 3666777777777777665321 12346677777777
Q ss_pred ccCCCCCCCChh-----hhcCCCCCCEEe
Q 036932 114 ISYNQLSGTLPS-----AITTLTSLEYLA 137 (790)
Q Consensus 114 Ls~n~i~~~~~~-----~~~~l~~L~~L~ 137 (790)
|..|.-.|..+. .+.-|++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 777665544332 244455555554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.001 Score=64.76 Aligned_cols=63 Identities=35% Similarity=0.436 Sum_probs=31.8
Q ss_pred cCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCC--CCCcCccccCCCCCCCEEecCCCcCc
Q 036932 33 ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNI--SGSSESQGVCELKNLSEFILRGINIK 96 (790)
Q Consensus 33 ~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i--~~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (790)
..+..|+.|++.+..++.+..+..+++|++|++|.|.. .+..+. ....+++|++|++++|.+.
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccc
Confidence 34455555555555555555666666666666666633 221111 1223355555555555444
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.0001 Score=71.49 Aligned_cols=99 Identities=25% Similarity=0.195 Sum_probs=82.6
Q ss_pred CccceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCC
Q 036932 13 SNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG 92 (790)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~ 92 (790)
..+.|..=||.+..| +-..+++.|++|.||-|.|+.+..+..|+.|+.|+|..|.|.+..+...+.++++|+.|-|..
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 345566667777754 467899999999999999999999999999999999999999877777788999999999999
Q ss_pred CcCcccCCc-----ccCCCCCCcEEE
Q 036932 93 INIKGHLPD-----CLKNLSHLKVLD 113 (790)
Q Consensus 93 n~l~~~~~~-----~~~~l~~L~~L~ 113 (790)
|.-.|.-+. .+.-+++|+.||
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhcc
Confidence 877665443 356788888887
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.00089 Score=65.11 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=27.5
Q ss_pred CCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCC--cCcccCCcccCCCCCCcEEEccCCCCC
Q 036932 57 LKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI--NIKGHLPDCLKNLSHLKVLDISYNQLS 120 (790)
Q Consensus 57 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~i~ 120 (790)
...|+.|.+.+..++.. ..+-.+++|++|.++.| .+.+.++....++++|++|++++|+|.
T Consensus 42 ~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33444444444444321 12344455555555555 333333333344455555555555554
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.32 E-value=0.0015 Score=37.90 Aligned_cols=20 Identities=40% Similarity=0.718 Sum_probs=11.3
Q ss_pred CCEEEccCCcccccCCccccC
Q 036932 661 IESLDLSHNRLSGQVPPRLTE 681 (790)
Q Consensus 661 L~~LdLs~N~lsg~ip~~l~~ 681 (790)
|+.||||+|+|+ .||.+|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 556666666666 55555443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.48 E-value=0.0056 Score=69.03 Aligned_cols=114 Identities=25% Similarity=0.161 Sum_probs=62.6
Q ss_pred CCCCCCEEeCCCCCC-CCCcCccccCCCCCCCEEecCCC-cCcccCC----cccCCCCCCcEEEccCCC-CCCCChhhhc
Q 036932 56 KLKNLEALDLSYNNI-SGSSESQGVCELKNLSEFILRGI-NIKGHLP----DCLKNLSHLKVLDISYNQ-LSGTLPSAIT 128 (790)
Q Consensus 56 ~l~~L~~L~Ls~n~i-~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~ 128 (790)
.++.|+.|.+.++.- ....-......+++|++|+++++ ......+ .....+++|+.|+++++. ++...-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 366777777766532 21111123456677777777662 1111111 123445777777777776 4444333333
Q ss_pred C-CCCCCEEeCcCCc-CccccchhhhhCCCCCcEEEccCCCCC
Q 036932 129 T-LTSLEYLALLDNN-FEGTFLLNSLANHSKLEVLLLSSRTNM 169 (790)
Q Consensus 129 ~-l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~L~~n~~~ 169 (790)
. +++|++|.+.++. ++..-.......++.|++|+++.+...
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3 6777777766665 454333344556777777777766543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.33 E-value=0.0076 Score=34.91 Aligned_cols=20 Identities=60% Similarity=0.720 Sum_probs=10.5
Q ss_pred ecceeccCCccccccCccccC
Q 036932 637 IRGLNLSYNFLSGSIPGSFSN 657 (790)
Q Consensus 637 L~~L~Ls~N~l~g~ip~~l~~ 657 (790)
|+.|||++|+|+ .+|.+|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 445555555555 45554443
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.18 E-value=0.0034 Score=70.82 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=18.5
Q ss_pred CcEEeccCCcccccC-chhhhc-CccccEEeccCccc
Q 036932 473 LITLDLRDNRFSGVI-PHQISE-SLTLRFLLLRGNYL 507 (790)
Q Consensus 473 L~~L~L~~N~l~~~~-p~~~~~-l~~L~~L~L~~N~l 507 (790)
++.|+++.+...... -..... +..++.+++.+...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 777777777644221 111111 55566666666544
No 73
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.43 E-value=0.0021 Score=61.04 Aligned_cols=102 Identities=21% Similarity=0.144 Sum_probs=74.5
Q ss_pred ceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCccc-cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCc
Q 036932 16 WLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN 94 (790)
Q Consensus 16 ~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 94 (790)
++.++.+....++...+..+++.++||++.|++..+. .|.-++.|..||++.|++.-.+ ..+..+..++.+++..|+
T Consensus 22 tc~~s~s~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~--~d~~q~~e~~~~~~~~n~ 99 (326)
T KOG0473|consen 22 TCDLSLSELSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLP--KDAKQQRETVNAASHKNN 99 (326)
T ss_pred ccCCCHHHhcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhCh--hhHHHHHHHHHHHhhccc
Confidence 4555666777888888999999999999999877443 4677788888888888876332 346666667777777776
Q ss_pred CcccCCcccCCCCCCcEEEccCCCCC
Q 036932 95 IKGHLPDCLKNLSHLKVLDISYNQLS 120 (790)
Q Consensus 95 l~~~~~~~~~~l~~L~~L~Ls~n~i~ 120 (790)
.+ ..|.+++..++++++++..|.+.
T Consensus 100 ~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 100 HS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred hh-hCCccccccCCcchhhhccCcch
Confidence 66 56777777777777777777644
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.96 E-value=0.011 Score=56.26 Aligned_cols=83 Identities=20% Similarity=0.169 Sum_probs=71.1
Q ss_pred cccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 036932 611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFN 689 (790)
Q Consensus 611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ 689 (790)
....+.||++.|++. .....+..++ +..||+|.|++. ..|+.++.+.+++.+++..|.++ ..|.++..++.+.+++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 356788999999987 4445556665 888999999998 78999999999999999999998 7899999999999999
Q ss_pred cccCcce
Q 036932 690 VSFNNLS 696 (790)
Q Consensus 690 ls~N~l~ 696 (790)
+..|+|.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999875
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.61 E-value=0.0046 Score=68.08 Aligned_cols=65 Identities=26% Similarity=0.222 Sum_probs=36.3
Q ss_pred hccCCCCCEEecCCccccCcccccc-----c-ccccceeeccCCcCccc----cchhhcCCCCCcEEeccCCccc
Q 036932 420 LLNHGSLNLLSVSENCLSGPMTSSF-----N-LSSLEHLYLQMNSLSGP----IPIALFRSSNLITLDLRDNRFS 484 (790)
Q Consensus 420 ~~~~~~L~~L~l~~n~l~~~~~~~~-----~-l~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~L~~N~l~ 484 (790)
+.....|..|+++.|.+.+...... . -..+++|++..|.+++. +...+.....++.+|++.|.+.
T Consensus 111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 3345566666666666653222111 1 14566667776766532 4455555667777777777664
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.42 E-value=0.12 Score=27.74 Aligned_cols=13 Identities=54% Similarity=0.800 Sum_probs=6.1
Q ss_pred CCCEEEccCCccc
Q 036932 660 WIESLDLSHNRLS 672 (790)
Q Consensus 660 ~L~~LdLs~N~ls 672 (790)
+|+.|||++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4566666666654
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.22 E-value=0.0066 Score=66.85 Aligned_cols=44 Identities=30% Similarity=0.301 Sum_probs=20.1
Q ss_pred ccccCCCCCCEEEccCCcccccCCccccC----CCCCCeEecccCcce
Q 036932 653 GSFSNLKWIESLDLSHNRLSGQVPPRLTE----LNFLSNFNVSFNNLS 696 (790)
Q Consensus 653 ~~l~~l~~L~~LdLs~N~lsg~ip~~l~~----l~~L~~L~ls~N~l~ 696 (790)
..+.....++++++++|.....-+..+.. ...+..++++.|+.+
T Consensus 398 ~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 445 (478)
T KOG4308|consen 398 AQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPIT 445 (478)
T ss_pred hhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhh
Confidence 33444455555555555554433332221 114455555555443
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.18 E-value=0.15 Score=30.78 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=14.2
Q ss_pred CCCCCEEEccCCcccccCCcc
Q 036932 658 LKWIESLDLSHNRLSGQVPPR 678 (790)
Q Consensus 658 l~~L~~LdLs~N~lsg~ip~~ 678 (790)
|++|+.|+|++|+|+...+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467788888888887443333
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.18 E-value=0.15 Score=30.78 Aligned_cols=21 Identities=43% Similarity=0.528 Sum_probs=14.2
Q ss_pred CCCCCEEEccCCcccccCCcc
Q 036932 658 LKWIESLDLSHNRLSGQVPPR 678 (790)
Q Consensus 658 l~~L~~LdLs~N~lsg~ip~~ 678 (790)
|++|+.|+|++|+|+...+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467788888888887443333
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=89.96 E-value=0.069 Score=31.60 Aligned_cols=22 Identities=32% Similarity=0.441 Sum_probs=12.7
Q ss_pred CCCCCEEEccCCcccccCCccc
Q 036932 658 LKWIESLDLSHNRLSGQVPPRL 679 (790)
Q Consensus 658 l~~L~~LdLs~N~lsg~ip~~l 679 (790)
+++|+.|||++|+|++....++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 3567778888887776555443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.63 E-value=0.57 Score=28.21 Aligned_cols=16 Identities=50% Similarity=0.636 Sum_probs=9.2
Q ss_pred CCCcEEEccCCCCCCC
Q 036932 107 SHLKVLDISYNQLSGT 122 (790)
Q Consensus 107 ~~L~~L~Ls~n~i~~~ 122 (790)
++|++|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666544
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.63 E-value=0.57 Score=28.21 Aligned_cols=16 Identities=50% Similarity=0.636 Sum_probs=9.2
Q ss_pred CCCcEEEccCCCCCCC
Q 036932 107 SHLKVLDISYNQLSGT 122 (790)
Q Consensus 107 ~~L~~L~Ls~n~i~~~ 122 (790)
++|++|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4556666666666544
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.43 E-value=0.32 Score=28.68 Aligned_cols=16 Identities=44% Similarity=0.598 Sum_probs=6.8
Q ss_pred CCCcEEeccCCccccc
Q 036932 471 SNLITLDLRDNRFSGV 486 (790)
Q Consensus 471 ~~L~~L~L~~N~l~~~ 486 (790)
++|+.|+|++|++++.
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3455555555555433
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.76 E-value=1.6 Score=26.41 Aligned_cols=17 Identities=47% Similarity=0.560 Sum_probs=8.5
Q ss_pred CCCCEEEcCCCCCCccc
Q 036932 36 TNLKILDLSGCGITTLQ 52 (790)
Q Consensus 36 ~~L~~L~Ls~n~i~~~~ 52 (790)
++|++|++++|+|+.++
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 44555555555554433
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.42 E-value=1.4 Score=26.66 Aligned_cols=15 Identities=47% Similarity=0.725 Sum_probs=11.8
Q ss_pred CCCCCEEEccCCccc
Q 036932 658 LKWIESLDLSHNRLS 672 (790)
Q Consensus 658 l~~L~~LdLs~N~ls 672 (790)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 467888888888885
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.99 E-value=0.79 Score=43.32 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=24.0
Q ss_pred CCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCc
Q 036932 106 LSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNN 142 (790)
Q Consensus 106 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 142 (790)
-..++.+|-++..|..+.-+.+.+++.++.|.+.++.
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 3456777777777765555566666666666666654
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.85 E-value=0.98 Score=42.73 Aligned_cols=34 Identities=24% Similarity=0.107 Sum_probs=18.1
Q ss_pred CCCcEEeccCCc-ccccCchhhhcCccccEEeccC
Q 036932 471 SNLITLDLRDNR-FSGVIPHQISESLTLRFLLLRG 504 (790)
Q Consensus 471 ~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~ 504 (790)
++|+.|++++|. |+...-.++..+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 455555555553 4444445555556666655544
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.47 E-value=3.6 Score=25.31 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=10.3
Q ss_pred CCCCEEEccCCccc
Q 036932 659 KWIESLDLSHNRLS 672 (790)
Q Consensus 659 ~~L~~LdLs~N~ls 672 (790)
++|+.|||++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46777888887775
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.24 E-value=4.3 Score=24.48 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=7.4
Q ss_pred CCCEEEccCCccc
Q 036932 660 WIESLDLSHNRLS 672 (790)
Q Consensus 660 ~L~~LdLs~N~ls 672 (790)
+|+.|+.|+|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555566666555
No 90
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=61.64 E-value=13 Score=24.68 Aligned_cols=18 Identities=11% Similarity=0.237 Sum_probs=8.1
Q ss_pred hhhhhhHHHHHHHHHHHH
Q 036932 755 LYWSFGASYVTVILGLFA 772 (790)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~ 772 (790)
+.+++.+|+++.++.++.
T Consensus 8 IIv~V~vg~~iiii~~~~ 25 (38)
T PF02439_consen 8 IIVAVVVGMAIIIICMFY 25 (38)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555544443333
No 91
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=61.56 E-value=5.3 Score=32.25 Aligned_cols=31 Identities=6% Similarity=0.145 Sum_probs=22.6
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhhhhccccc
Q 036932 751 DTVSLYWSFGASYVTVILGLFAILWINSNWR 781 (790)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (790)
...|.|++.|.|++..+++++.+++++.|||
T Consensus 39 ~ayWpyLA~GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 39 VAYWPYLAAGGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred HhhhHHhhccchhhhHHHHHHHHHHhhhhhh
Confidence 4478888888888877777666666666776
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=60.53 E-value=4.6 Score=52.92 Aligned_cols=36 Identities=25% Similarity=0.165 Sum_probs=26.5
Q ss_pred EccCCcccccCCccccCCCCCCeEecccCcceecCC
Q 036932 665 DLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIP 700 (790)
Q Consensus 665 dLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP 700 (790)
||++|+|+...+..|..+++|+.|+|++|++.|.|.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 577777776666777777777777777777777664
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=56.23 E-value=54 Score=35.60 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=57.4
Q ss_pred CCCEEecCCccccCcccccc---cccccceeeccCCcCc-----ccc--chhh--cCCCCCcEEeccCCcccccCchh--
Q 036932 425 SLNLLSVSENCLSGPMTSSF---NLSSLEHLYLQMNSLS-----GPI--PIAL--FRSSNLITLDLRDNRFSGVIPHQ-- 490 (790)
Q Consensus 425 ~L~~L~l~~n~l~~~~~~~~---~l~~L~~L~L~~n~l~-----~~~--p~~~--~~~~~L~~L~L~~N~l~~~~p~~-- 490 (790)
.+++|....|.+.|...... ..++.+.+++..-.-. +.. +.+. ..---+..+.++.|++.......
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 36677777776665544433 3445555555443221 000 0000 11123667778888776433322
Q ss_pred -hhcCccccEEeccCccccc----cCCccccCCCCCCEEEccCCcCc
Q 036932 491 -ISESLTLRFLLLRGNYLEG----QIPNQLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 491 -~~~l~~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~Ls~N~l~ 532 (790)
...-+.+..|++++|.... .+|.....-.+++....+.|...
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 2345678888888887643 34555555556666666666543
No 94
>PF15102 TMEM154: TMEM154 protein family
Probab=52.93 E-value=7.5 Score=34.69 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhhhccccccc
Q 036932 761 ASYVTVILGLFAILWINSNWRRQ 783 (790)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~ 783 (790)
+.+++.++.+++.+.++||||.+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 33444444444445556777764
No 95
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=48.99 E-value=82 Score=34.27 Aligned_cols=58 Identities=24% Similarity=0.294 Sum_probs=30.0
Q ss_pred ceEEECCCCcccccCChhhhhce----ecceeccCCcccc----ccCccccCCCCCCEEEccCCcc
Q 036932 614 MVGLDLSCNQLTGGIPSEIGDLQ----IRGLNLSYNFLSG----SIPGSFSNLKWIESLDLSHNRL 671 (790)
Q Consensus 614 L~~L~Ls~N~l~g~ip~~~~~l~----L~~L~Ls~N~l~g----~ip~~l~~l~~L~~LdLs~N~l 671 (790)
++.+.++.+.+.-..-..+..+. +..|++++|.... .+|....--.+++....|.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 45566666666533222222221 6677777776542 3444444445555555555544
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.56 E-value=17 Score=40.04 Aligned_cols=13 Identities=38% Similarity=0.411 Sum_probs=6.3
Q ss_pred CCCCCcEEeccCC
Q 036932 227 NNTKLEALFLTNN 239 (790)
Q Consensus 227 ~l~~L~~L~L~~n 239 (790)
..++|+.|+|++|
T Consensus 242 ~apklk~L~LS~N 254 (585)
T KOG3763|consen 242 IAPKLKTLDLSHN 254 (585)
T ss_pred hcchhheeecccc
Confidence 3344555555554
No 97
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=43.15 E-value=21 Score=28.23 Aligned_cols=32 Identities=3% Similarity=0.104 Sum_probs=17.5
Q ss_pred cccchhhhhhhHHHHHHHHHHH-Hhhhhccccc
Q 036932 750 IDTVSLYWSFGASYVTVILGLF-AILWINSNWR 781 (790)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 781 (790)
....|+|+.++.|.++..+.++ ++++++.||+
T Consensus 12 lp~~~yyiiA~gga~llL~~v~l~vvL~C~r~~ 44 (87)
T PF11980_consen 12 LPPYWYYIIAMGGALLLLVAVCLGVVLYCHRFH 44 (87)
T ss_pred CCceeeHHHhhccHHHHHHHHHHHHHHhhhhhc
Confidence 4567778776666555555454 3333444443
No 98
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=40.50 E-value=23 Score=36.94 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=14.1
Q ss_pred hhhHHHHHHHHHHHHhhhhccccccccc
Q 036932 758 SFGASYVTVILGLFAILWINSNWRRQWF 785 (790)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (790)
++|+..++.++++++++++.||.+++.|
T Consensus 276 aVG~~La~lvlivLiaYli~Rrr~~~gY 303 (306)
T PF01299_consen 276 AVGAALAGLVLIVLIAYLIGRRRSRAGY 303 (306)
T ss_pred HHHHHHHHHHHHHHHhheeEeccccccc
Confidence 3444444444445555555555555534
No 99
>PRK14762 membrane protein; Provisional
Probab=38.91 E-value=45 Score=19.63 Aligned_cols=20 Identities=10% Similarity=0.383 Sum_probs=14.0
Q ss_pred hhhhhhHHHHHHHHHHHHhh
Q 036932 755 LYWSFGASYVTVILGLFAIL 774 (790)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~ 774 (790)
+.|.+++-|.++.+++.+++
T Consensus 4 ~lw~i~iifligllvvtgvf 23 (27)
T PRK14762 4 ILWAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44567777888887777754
No 100
>PF15179 Myc_target_1: Myc target protein 1
Probab=34.43 E-value=34 Score=31.64 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=21.7
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhhhhcc
Q 036932 751 DTVSLYWSFGASYVTVILGLFAILWINS 778 (790)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 778 (790)
-+..|.++|++|+++|.++++...|.-+
T Consensus 21 lIlaF~vSm~iGLviG~li~~LltwlSR 48 (197)
T PF15179_consen 21 LILAFCVSMAIGLVIGALIWALLTWLSR 48 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677889999999998887777666544
No 101
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=33.88 E-value=22 Score=39.23 Aligned_cols=62 Identities=27% Similarity=0.215 Sum_probs=37.3
Q ss_pred CCccceEEeCCCCCCCC---cchhhhCCCCCCEEEccCC--CCCCcCchhHh-hCCCCCcEEeccCCccc
Q 036932 179 PTFQLKVLGLPNYNLKV---IPSFLLHQYDLKLLDLSGN--NLVGDFPTWVL-RNNTKLEALFLTNNSFT 242 (790)
Q Consensus 179 ~~~~L~~L~l~~n~l~~---lp~~l~~l~~L~~L~Ls~n--~l~~~ip~~~~-~~l~~L~~L~L~~n~l~ 242 (790)
+.+.+..+++++|++.. +.......++|..|+|++| .+. ..+ ++. -+...|++|-+.+|.+.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~-el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SES-ELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chh-hhhhhcCCCHHHeeecCCccc
Confidence 44567788889998843 4444456789999999999 332 111 111 12334556666666554
No 102
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=29.50 E-value=34 Score=32.76 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=12.4
Q ss_pred cchhhhhhhHHHHHHHHHHHHhhhh
Q 036932 752 TVSLYWSFGASYVTVILGLFAILWI 776 (790)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (790)
...+++++++|.++++++++++.+.
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHH
Confidence 3445555555555555544444433
No 103
>PRK00523 hypothetical protein; Provisional
Probab=28.80 E-value=37 Score=26.27 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=9.8
Q ss_pred HHHHHHHHHhhhhccccccccc
Q 036932 764 VTVILGLFAILWINSNWRRQWF 785 (790)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~ 785 (790)
+..++++++.+++-+++-.+|+
T Consensus 13 ~~li~G~~~Gffiark~~~k~l 34 (72)
T PRK00523 13 PLLIVGGIIGYFVSKKMFKKQI 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 104
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=27.52 E-value=46 Score=19.82 Aligned_cols=13 Identities=46% Similarity=0.404 Sum_probs=7.9
Q ss_pred CCCCCEEeCCCCC
Q 036932 57 LKNLEALDLSYNN 69 (790)
Q Consensus 57 l~~L~~L~Ls~n~ 69 (790)
+++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3566666666663
No 105
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=27.43 E-value=45 Score=22.94 Aligned_cols=20 Identities=5% Similarity=0.348 Sum_probs=11.2
Q ss_pred hhhhhHHHHHHHHHHHHhhh
Q 036932 756 YWSFGASYVTVILGLFAILW 775 (790)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~ 775 (790)
|..++.||++.+.+.+.+++
T Consensus 8 ~L~~~F~~lIC~Fl~~~~~F 27 (54)
T PF06716_consen 8 YLLLAFGFLICLFLFCLVVF 27 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566667666655544433
No 106
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=25.50 E-value=69 Score=25.31 Aligned_cols=6 Identities=0% Similarity=-0.252 Sum_probs=2.2
Q ss_pred hHHHHH
Q 036932 760 GASYVT 765 (790)
Q Consensus 760 ~~~~~~ 765 (790)
++|.++
T Consensus 7 ~~g~~~ 12 (75)
T PF14575_consen 7 IVGVLL 12 (75)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 107
>PRK01844 hypothetical protein; Provisional
Probab=22.53 E-value=55 Score=25.37 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=7.6
Q ss_pred HHHHHhhhhccccccccc
Q 036932 768 LGLFAILWINSNWRRQWF 785 (790)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~ 785 (790)
+++++.+++-+++-.+|+
T Consensus 16 ~G~~~Gff~ark~~~k~l 33 (72)
T PRK01844 16 AGVALGFFIARKYMMNYL 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 108
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.67 E-value=52 Score=43.96 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=17.3
Q ss_pred ECCCCcccccCChhhhhce-ecceeccCCccc
Q 036932 618 DLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLS 648 (790)
Q Consensus 618 ~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~ 648 (790)
||++|+|+-.-+..+..+. |+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4666666633333344453 666666666655
No 109
>PF15050 SCIMP: SCIMP protein
Probab=20.75 E-value=1e+02 Score=26.39 Aligned_cols=8 Identities=0% Similarity=-0.039 Sum_probs=3.1
Q ss_pred hhhhhhhH
Q 036932 754 SLYWSFGA 761 (790)
Q Consensus 754 ~~~~~~~~ 761 (790)
|+++++++
T Consensus 9 WiiLAVaI 16 (133)
T PF15050_consen 9 WIILAVAI 16 (133)
T ss_pred HHHHHHHH
Confidence 33333333
Done!