Query 036932
Match_columns 790
No_of_seqs 603 out of 5182
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 11:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036932.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036932hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.1E-81 1.4E-85 740.9 50.8 672 36-732 50-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.3E-73 1.5E-77 672.2 44.5 640 57-717 49-715 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.3E-59 8E-64 549.9 47.6 590 17-701 9-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-58 6.4E-63 542.2 47.8 585 39-723 7-626 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-56 4.9E-61 536.2 38.6 568 40-734 8-594 (844)
6 3t6q_A CD180 antigen; protein- 100.0 2.7E-55 9.1E-60 508.5 39.9 535 40-701 16-565 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 3.6E-54 1.2E-58 499.0 38.8 517 58-702 32-564 (606)
8 3t6q_A CD180 antigen; protein- 100.0 4.7E-53 1.6E-57 489.7 43.6 515 13-537 34-565 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 3.5E-52 1.2E-56 498.3 41.1 525 62-724 8-565 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 4.2E-52 1.4E-56 481.7 36.8 528 60-724 13-563 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 8.3E-49 2.9E-53 450.8 33.8 511 39-703 10-538 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-47 4.1E-52 438.9 34.0 370 227-702 121-516 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 1E-46 3.4E-51 433.5 35.1 506 15-537 10-536 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 3E-46 1E-50 427.4 34.2 483 38-536 7-514 (549)
15 4eco_A Uncharacterized protein 100.0 1.1E-47 3.7E-52 444.2 15.4 482 83-698 81-602 (636)
16 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-44 3.8E-49 422.2 40.0 550 1-700 20-584 (635)
17 4eco_A Uncharacterized protein 100.0 2.5E-47 8.6E-52 441.2 15.9 363 287-721 192-602 (636)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-45 4.6E-50 418.8 26.7 459 87-701 4-486 (520)
19 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-44 5.5E-49 409.9 26.7 455 16-537 4-486 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 2.5E-44 8.7E-49 422.0 26.5 355 263-700 435-844 (876)
21 4ecn_A Leucine-rich repeat pro 100.0 2.1E-44 7.2E-49 422.7 23.0 365 280-718 425-839 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 1.1E-41 3.7E-46 397.0 39.2 510 12-536 52-584 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.1E-42 2.1E-46 391.9 21.9 457 155-702 30-516 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-41 7.9E-46 387.1 26.6 464 34-537 29-515 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 5.1E-41 1.8E-45 374.5 28.1 375 256-705 13-417 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 6.4E-41 2.2E-45 370.5 18.6 418 83-700 11-433 (454)
27 3v47_A TOLL-like receptor 5B a 100.0 8.7E-39 3E-43 356.5 28.4 364 231-677 32-413 (455)
28 1jl5_A Outer protein YOPM; leu 100.0 7.7E-40 2.6E-44 361.8 16.3 389 180-702 10-417 (454)
29 3bz5_A Internalin-J, INLJ; leu 100.0 2.9E-36 9.8E-41 333.5 27.5 323 24-413 30-352 (457)
30 2id5_A Lingo-1, leucine rich r 100.0 1E-36 3.5E-41 341.7 23.3 343 306-723 15-360 (477)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-36 7.4E-41 334.5 25.3 359 78-540 37-395 (457)
32 1o6v_A Internalin A; bacterial 100.0 4.1E-35 1.4E-39 327.1 31.2 322 277-697 67-389 (466)
33 1o6v_A Internalin A; bacterial 100.0 2.2E-34 7.6E-39 321.2 32.5 348 33-439 43-390 (466)
34 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-35 6.3E-40 311.2 20.6 255 402-728 52-312 (313)
35 2id5_A Lingo-1, leucine rich r 100.0 4.3E-34 1.5E-38 320.4 25.2 294 233-532 15-309 (477)
36 3oja_B Anopheles plasmodium-re 100.0 5.6E-34 1.9E-38 327.6 24.1 334 277-723 50-384 (597)
37 3o6n_A APL1; leucine-rich repe 100.0 8.1E-34 2.8E-38 309.3 23.9 333 277-722 44-377 (390)
38 3o6n_A APL1; leucine-rich repe 100.0 3.6E-32 1.2E-36 296.2 28.0 270 251-537 43-312 (390)
39 4fmz_A Internalin; leucine ric 100.0 8.1E-32 2.8E-36 288.7 29.4 305 299-696 41-346 (347)
40 1ogq_A PGIP-2, polygalacturona 100.0 4.3E-33 1.5E-37 293.2 17.2 249 376-697 51-306 (313)
41 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-34 6.6E-39 322.0 6.7 280 253-533 3-327 (461)
42 3oja_B Anopheles plasmodium-re 100.0 9.2E-32 3.2E-36 309.2 27.3 315 251-678 49-364 (597)
43 4fmz_A Internalin; leucine ric 100.0 7E-31 2.4E-35 281.4 31.2 308 31-388 39-346 (347)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-30 6.1E-35 276.2 23.3 286 303-694 34-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 5.6E-30 1.9E-34 272.1 26.6 219 303-532 32-253 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-32 5E-37 306.8 6.0 388 107-540 3-448 (461)
47 2ft3_A Biglycan; proteoglycan, 100.0 4.6E-30 1.6E-34 272.9 22.1 287 230-530 34-331 (332)
48 1xku_A Decorin; proteoglycan, 100.0 1.3E-29 4.4E-34 269.3 24.1 268 253-530 52-330 (330)
49 2z80_A TOLL-like receptor 2, v 100.0 6.1E-29 2.1E-33 266.7 15.8 280 326-701 30-319 (353)
50 3ogk_B Coronatine-insensitive 100.0 8E-30 2.7E-34 294.1 7.0 378 252-697 111-527 (592)
51 3ogk_B Coronatine-insensitive 100.0 2.2E-29 7.5E-34 290.4 9.8 426 195-693 64-548 (592)
52 2z66_A Variable lymphocyte rec 100.0 7E-28 2.4E-32 253.1 18.9 229 402-700 30-265 (306)
53 2z66_A Variable lymphocyte rec 100.0 1.5E-27 5.1E-32 250.6 19.3 250 256-536 10-265 (306)
54 2z80_A TOLL-like receptor 2, v 100.0 6.4E-28 2.2E-32 258.8 16.0 274 257-536 35-318 (353)
55 3zyi_A Leucine-rich repeat-con 99.9 8.7E-27 3E-31 258.7 23.2 248 378-700 57-307 (452)
56 4fcg_A Uncharacterized protein 99.9 2.8E-27 9.6E-32 250.2 17.9 224 375-696 81-314 (328)
57 3zyj_A Leucine-rich repeat-con 99.9 9.7E-27 3.3E-31 257.3 22.9 248 378-700 46-296 (440)
58 1wwl_A Monocyte differentiatio 99.9 2.8E-28 9.6E-33 256.5 6.2 247 374-697 42-310 (312)
59 3o53_A Protein LRIM1, AGAP0063 99.9 3.9E-28 1.3E-32 256.0 7.2 263 356-701 15-281 (317)
60 1ozn_A Reticulon 4 receptor; N 99.9 2.7E-26 9.2E-31 238.3 19.6 226 306-536 15-242 (285)
61 4fcg_A Uncharacterized protein 99.9 2.7E-26 9.2E-31 242.7 17.5 224 303-532 82-314 (328)
62 2p1m_B Transport inhibitor res 99.9 4.2E-28 1.4E-32 279.8 3.8 83 612-695 432-518 (594)
63 1wwl_A Monocyte differentiatio 99.9 4E-27 1.4E-31 247.6 10.9 247 276-533 41-310 (312)
64 1ozn_A Reticulon 4 receptor; N 99.9 3.9E-26 1.3E-30 237.1 17.3 223 256-484 14-238 (285)
65 3zyi_A Leucine-rich repeat-con 99.9 2.3E-25 7.9E-30 247.2 22.5 252 255-536 56-307 (452)
66 3oja_A Leucine-rich immune mol 99.9 9.1E-27 3.1E-31 259.8 11.2 233 376-691 35-270 (487)
67 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-27 9.4E-32 249.5 5.8 255 257-527 14-270 (317)
68 3zyj_A Leucine-rich repeat-con 99.9 2.7E-25 9.4E-30 245.7 21.7 252 255-536 45-296 (440)
69 3g06_A SSPH2 (leucine-rich rep 99.9 9.1E-25 3.1E-29 248.4 26.4 195 302-532 40-234 (622)
70 2p1m_B Transport inhibitor res 99.9 4.2E-27 1.4E-31 271.4 5.0 439 184-695 46-543 (594)
71 2z62_A TOLL-like receptor 4, v 99.9 1E-24 3.5E-29 225.2 19.9 208 425-702 29-243 (276)
72 3g06_A SSPH2 (leucine-rich rep 99.9 3.7E-24 1.3E-28 243.3 24.8 267 182-494 41-307 (622)
73 3oja_A Leucine-rich immune mol 99.9 4.4E-25 1.5E-29 246.2 12.7 234 278-526 34-269 (487)
74 2o6q_A Variable lymphocyte rec 99.9 4.3E-23 1.5E-27 212.0 20.3 206 425-701 17-223 (270)
75 2z62_A TOLL-like receptor 4, v 99.9 5.4E-23 1.9E-27 212.2 19.0 222 257-509 11-238 (276)
76 3goz_A Leucine-rich repeat-con 99.9 3.9E-24 1.4E-28 229.8 10.2 27 653-679 278-304 (362)
77 3goz_A Leucine-rich repeat-con 99.9 4.8E-24 1.7E-28 229.1 10.0 259 356-700 3-301 (362)
78 1p9a_G Platelet glycoprotein I 99.9 1.4E-22 4.9E-27 209.9 19.0 205 420-699 6-211 (290)
79 3rfs_A Internalin B, repeat mo 99.9 8.8E-23 3E-27 209.9 15.7 226 278-542 19-245 (272)
80 3rfs_A Internalin B, repeat mo 99.9 6.3E-23 2.2E-27 211.0 13.4 205 301-537 18-223 (272)
81 2ca6_A RAN GTPase-activating p 99.9 5.9E-24 2E-28 230.8 5.3 217 420-700 56-320 (386)
82 4glp_A Monocyte differentiatio 99.9 8.1E-23 2.8E-27 214.6 13.1 203 424-697 91-308 (310)
83 3m19_A Variable lymphocyte rec 99.9 1.9E-22 6.4E-27 204.9 14.1 211 448-731 15-232 (251)
84 2o6q_A Variable lymphocyte rec 99.9 2.1E-21 7.1E-26 199.5 21.9 204 304-536 18-222 (270)
85 2ca6_A RAN GTPase-activating p 99.9 3.2E-23 1.1E-27 225.0 7.8 242 294-536 24-320 (386)
86 2ast_B S-phase kinase-associat 99.9 1.2E-22 4E-27 216.3 9.5 227 402-702 72-312 (336)
87 4glp_A Monocyte differentiatio 99.9 3.6E-22 1.2E-26 209.6 11.8 221 425-717 65-305 (310)
88 1p9a_G Platelet glycoprotein I 99.9 3.9E-21 1.3E-25 199.1 18.8 204 298-534 6-210 (290)
89 2ast_B S-phase kinase-associat 99.9 6.6E-22 2.3E-26 210.5 12.2 197 329-530 49-258 (336)
90 2xwt_C Thyrotropin receptor; s 99.9 2.1E-21 7.3E-26 195.6 14.5 195 425-694 32-237 (239)
91 2xwt_C Thyrotropin receptor; s 99.8 9.1E-21 3.1E-25 190.9 13.9 195 328-529 32-236 (239)
92 3m19_A Variable lymphocyte rec 99.8 7.3E-20 2.5E-24 185.7 18.1 160 376-536 36-196 (251)
93 1h6u_A Internalin H; cell adhe 99.8 8.6E-20 2.9E-24 191.0 19.2 199 31-271 36-234 (308)
94 1h6u_A Internalin H; cell adhe 99.8 4.5E-20 1.5E-24 193.1 17.0 211 279-532 20-230 (308)
95 3cvr_A Invasion plasmid antige 99.8 5.4E-20 1.9E-24 206.5 15.0 186 402-682 61-253 (571)
96 4ay9_X Follicle-stimulating ho 99.8 7.5E-20 2.6E-24 195.3 15.4 241 256-529 12-256 (350)
97 4ay9_X Follicle-stimulating ho 99.8 1.6E-19 5.4E-24 192.8 15.1 240 16-288 13-256 (350)
98 3cvr_A Invasion plasmid antige 99.8 1.8E-19 6.1E-24 202.2 15.1 189 328-544 60-255 (571)
99 2v70_A SLIT-2, SLIT homolog 2 99.8 7E-20 2.4E-24 181.5 9.9 91 611-701 80-171 (220)
100 2o6s_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 175.1 13.4 108 425-532 29-137 (208)
101 2v9t_B SLIT homolog 2 protein 99.8 3.3E-19 1.1E-23 176.6 10.0 89 612-700 80-169 (220)
102 2o6s_A Variable lymphocyte rec 99.8 1.6E-18 5.3E-23 170.5 14.2 133 254-388 29-161 (208)
103 2xot_A Amphoterin-induced prot 99.8 8.5E-19 2.9E-23 187.9 11.3 177 451-699 22-205 (361)
104 1h6t_A Internalin B; cell adhe 99.8 6.8E-18 2.3E-22 174.9 15.8 170 445-697 44-214 (291)
105 3e6j_A Variable lymphocyte rec 99.7 6.3E-18 2.2E-22 168.5 13.7 89 612-701 88-177 (229)
106 4b8c_D Glucose-repressible alc 99.7 8.4E-19 2.9E-23 204.4 7.6 123 415-540 215-337 (727)
107 1h6t_A Internalin B; cell adhe 99.7 7.8E-18 2.7E-22 174.4 13.7 174 31-243 41-214 (291)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 1.9E-17 6.5E-22 163.9 13.9 154 379-536 15-170 (220)
109 1dce_A Protein (RAB geranylger 99.7 8.8E-20 3E-24 206.0 -3.4 215 372-690 346-567 (567)
110 1m9s_A Internalin B; cell inva 99.7 4.5E-17 1.5E-21 185.0 17.5 193 277-486 20-212 (605)
111 1dce_A Protein (RAB geranylger 99.7 3.4E-19 1.2E-23 201.2 -0.8 183 445-702 347-552 (567)
112 1w8a_A SLIT protein; signaling 99.7 7.8E-18 2.7E-22 162.9 9.0 113 611-723 53-166 (192)
113 4b8c_D Glucose-repressible alc 99.7 3.3E-18 1.1E-22 199.4 7.3 195 428-702 205-410 (727)
114 1xeu_A Internalin C; cellular 99.7 1.5E-17 5.2E-22 169.4 10.8 170 445-698 17-187 (263)
115 2v9t_B SLIT homolog 2 protein 99.7 6.3E-17 2.2E-21 160.1 14.1 153 379-535 15-168 (220)
116 1m9s_A Internalin B; cell inva 99.7 7.5E-17 2.6E-21 183.1 15.1 195 301-512 20-214 (605)
117 3e6j_A Variable lymphocyte rec 99.7 1.7E-16 5.9E-21 158.1 15.7 155 377-536 21-176 (229)
118 4ezg_A Putative uncharacterize 99.7 8.1E-17 2.8E-21 156.5 12.5 128 33-166 41-169 (197)
119 4ezg_A Putative uncharacterize 99.7 8.6E-17 2.9E-21 156.4 12.6 81 613-696 113-194 (197)
120 2xot_A Amphoterin-induced prot 99.7 5.4E-17 1.9E-21 173.8 12.0 157 377-534 41-204 (361)
121 1w8a_A SLIT protein; signaling 99.7 1.5E-16 5E-21 153.9 10.2 89 612-701 78-167 (192)
122 3sb4_A Hypothetical leucine ri 99.7 5.8E-17 2E-21 171.4 6.7 220 106-334 100-328 (329)
123 3sb4_A Hypothetical leucine ri 99.6 3.2E-16 1.1E-20 165.6 11.8 284 228-526 24-328 (329)
124 1xeu_A Internalin C; cellular 99.6 3.9E-16 1.3E-20 159.0 11.0 170 326-534 18-187 (263)
125 4fs7_A Uncharacterized protein 99.6 8.5E-15 2.9E-19 158.8 20.9 317 21-359 56-374 (394)
126 2wfh_A SLIT homolog 2 protein 99.6 6.5E-16 2.2E-20 149.2 9.3 90 611-700 53-143 (193)
127 4fdw_A Leucine rich hypothetic 99.6 3.3E-14 1.1E-18 153.3 21.5 264 106-386 112-381 (401)
128 2ell_A Acidic leucine-rich nuc 99.6 3.5E-15 1.2E-19 140.9 11.6 60 637-696 97-160 (168)
129 2je0_A Acidic leucine-rich nuc 99.6 2.5E-15 8.5E-20 138.8 8.2 82 611-692 63-149 (149)
130 4fdw_A Leucine rich hypothetic 99.6 5.5E-14 1.9E-18 151.6 19.0 270 58-364 113-383 (401)
131 2o6r_A Variable lymphocyte rec 99.6 1.1E-14 3.8E-19 138.7 11.2 90 612-701 52-142 (177)
132 2ell_A Acidic leucine-rich nuc 99.6 8.3E-15 2.9E-19 138.3 9.8 115 416-532 41-160 (168)
133 4fs7_A Uncharacterized protein 99.5 1.8E-13 6E-18 148.4 19.7 287 53-384 66-352 (394)
134 2je0_A Acidic leucine-rich nuc 99.5 1.3E-14 4.4E-19 134.0 9.1 125 402-528 19-149 (149)
135 1ds9_A Outer arm dynein; leuci 99.5 3.7E-16 1.3E-20 152.0 -1.8 153 468-696 15-185 (198)
136 2wfh_A SLIT homolog 2 protein 99.5 1.5E-13 5.1E-18 132.6 14.6 124 39-167 13-137 (193)
137 1a9n_A U2A', U2A'; complex (nu 99.5 3.3E-14 1.1E-18 135.2 9.8 134 30-168 13-152 (176)
138 2o6r_A Variable lymphocyte rec 99.5 7.5E-14 2.6E-18 133.0 12.2 132 402-536 9-141 (177)
139 3g39_A Variable lymphocyte rec 99.5 9.7E-14 3.3E-18 131.0 9.6 90 612-701 30-120 (170)
140 2r9u_A Variable lymphocyte rec 99.4 3.5E-13 1.2E-17 127.5 9.6 90 612-701 33-123 (174)
141 1ds9_A Outer arm dynein; leuci 99.4 7E-15 2.4E-19 142.9 -3.8 131 394-532 43-185 (198)
142 1a9n_A U2A', U2A'; complex (nu 99.4 8.6E-13 2.9E-17 125.4 10.6 105 425-532 43-153 (176)
143 4gt6_A Cell surface protein; l 99.4 2E-11 6.8E-16 132.2 22.7 160 23-191 50-215 (394)
144 4gt6_A Cell surface protein; l 99.4 2.2E-11 7.6E-16 131.8 20.8 133 295-436 258-390 (394)
145 3g39_A Variable lymphocyte rec 99.3 3.5E-12 1.2E-16 120.2 11.2 109 426-536 11-119 (170)
146 2r9u_A Variable lymphocyte rec 99.3 9.6E-12 3.3E-16 117.6 12.5 115 426-543 14-128 (174)
147 3un9_A NLR family member X1; l 99.3 9E-13 3.1E-17 140.7 2.4 108 425-532 102-224 (372)
148 3un9_A NLR family member X1; l 99.2 1.5E-12 5.3E-17 138.9 1.0 186 278-484 72-283 (372)
149 2ifg_A High affinity nerve gro 99.2 2.8E-11 9.6E-16 128.7 8.3 89 611-700 30-120 (347)
150 2ifg_A High affinity nerve gro 99.1 7.6E-11 2.6E-15 125.3 9.0 107 615-723 11-120 (347)
151 4h09_A Hypothetical leucine ri 99.1 5.8E-09 2E-13 112.2 21.6 121 249-375 236-356 (379)
152 4h09_A Hypothetical leucine ri 99.0 2.4E-08 8.1E-13 107.3 21.8 270 219-503 59-341 (379)
153 2ra8_A Uncharacterized protein 98.7 6.2E-09 2.1E-13 110.0 6.0 135 371-509 168-321 (362)
154 2ra8_A Uncharacterized protein 98.7 7.9E-09 2.7E-13 109.1 6.8 80 445-527 137-227 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 4.6E-08 1.6E-12 93.1 3.7 119 26-144 26-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 6.6E-08 2.2E-12 92.0 2.8 117 416-532 28-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.6E-07 5.3E-12 93.9 3.1 82 617-701 148-238 (267)
158 3rw6_A Nuclear RNA export fact 98.3 6.3E-07 2.2E-11 89.5 5.8 78 610-689 168-257 (267)
159 3e4g_A ATP synthase subunit S, 97.7 1.6E-05 5.3E-10 73.5 3.6 84 447-530 61-150 (176)
160 3e4g_A ATP synthase subunit S, 97.5 5.8E-05 2E-09 69.7 3.9 36 107-142 61-96 (176)
161 3rfe_A Platelet glycoprotein I 97.3 0.00028 9.5E-09 62.1 5.9 59 639-699 12-71 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00023 7.8E-09 67.0 4.5 115 29-143 34-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00058 2E-08 64.2 5.3 85 447-531 70-169 (197)
164 3rfe_A Platelet glycoprotein I 95.8 0.016 5.5E-07 50.7 6.7 56 87-144 12-68 (130)
165 2lz0_A Uncharacterized protein 66.5 4.2 0.00014 33.1 3.3 47 21-68 5-53 (100)
166 2l2t_A Receptor tyrosine-prote 58.0 9 0.00031 25.6 3.0 24 756-779 13-36 (44)
167 2ks1_B Epidermal growth factor 54.2 9.8 0.00034 25.4 2.7 23 757-779 15-37 (44)
168 2lz0_A Uncharacterized protein 46.0 21 0.00071 28.9 4.2 38 101-139 14-51 (100)
169 2jwa_A Receptor tyrosine-prote 33.9 26 0.00087 23.4 2.2 8 771-778 29-36 (44)
170 2k9y_A Ephrin type-A receptor 30.2 46 0.0016 21.6 3.1 9 757-765 17-25 (41)
171 2k1k_A Ephrin type-A receptor 26.7 47 0.0016 21.3 2.5 16 757-772 14-29 (38)
172 2l9u_A Receptor tyrosine-prote 24.2 43 0.0015 20.6 1.8 21 758-778 11-31 (40)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.1e-81 Score=740.87 Aligned_cols=672 Identities=33% Similarity=0.449 Sum_probs=567.1
Q ss_pred CCCCEEEcCCCCCC-----ccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCc--ccCCCCC
Q 036932 36 TNLKILDLSGCGIT-----TLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPD--CLKNLSH 108 (790)
Q Consensus 36 ~~L~~L~Ls~n~i~-----~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~ 108 (790)
.+++.|+|+++.+. .++++.++++|+.++++.+.+... ...+..+++|++|+|++|.+.+.+|. .++++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS--VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEEC--CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCC--chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 57888888888776 234688888888888888876532 23688888899999999888888887 8888899
Q ss_pred CcEEEccCCCCCCCChhhh-cCCCCCCEEeCcCCcCccccchhh--hhCCCCCcEEEccCCCCCcccccCCCCCCccceE
Q 036932 109 LKVLDISYNQLSGTLPSAI-TTLTSLEYLALLDNNFEGTFLLNS--LANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKV 185 (790)
Q Consensus 109 L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~--l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~ 185 (790)
|++|||++|.+.+..|..+ .++++|++|++++|.+++..+... +.++++|++|++++|......+ +..+++|++
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~ 204 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEF 204 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCE
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCE
Confidence 9999999988887777665 788889999999998887655332 6788889999998887654332 367788999
Q ss_pred EeCCCCCCCC-cchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCC
Q 036932 186 LGLPNYNLKV-IPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNN 264 (790)
Q Consensus 186 L~l~~n~l~~-lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 264 (790)
|++++|.+.. +|. +..+++|++|++++|.+++.+|..+ .++++|++|++++|.+++.. +...+++|++|++++|.
T Consensus 205 L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENK 280 (768)
T ss_dssp EECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESC--CCCCCTTCCEEECCSSE
T ss_pred EECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCcc--CccccCCCCEEECcCCc
Confidence 9999999954 555 8899999999999999998888765 58999999999999998764 33488999999999999
Q ss_pred CCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCccccc
Q 036932 265 LTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIF 344 (790)
Q Consensus 265 l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 344 (790)
++|.+|..++..+++|++|++++|.+++.+|..++.+++|++|++++|.+.|.+|...+..+++|++|++++|.+.+.+|
T Consensus 281 l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence 99999998876669999999999999999999999999999999999999999999878899999999999999999999
Q ss_pred ccccCCC-CCcEEEcCCcccccccccccCC--CCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhc
Q 036932 345 PKYMNLT-QLEFLYLENNKFSGKIEEGLSN--SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL 421 (790)
Q Consensus 345 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 421 (790)
..+..++ +|++|++++|.+++.+|..+.. +++|++|++++|++++.+|..+..++. |+.|++++|.+++.+|..+.
T Consensus 361 ~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~ 439 (768)
T 3rgz_A 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLG 439 (768)
T ss_dssp TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTT-CCEEECCSSEEESCCCGGGG
T ss_pred HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCC-CCEEECcCCcccCcccHHHh
Confidence 9998887 9999999999999988888877 889999999999999999999999998 99999999999999999999
Q ss_pred cCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEE
Q 036932 422 NHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFL 500 (790)
Q Consensus 422 ~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 500 (790)
.+++|++|++++|.+++.+|..+ .+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.+++.+++|++|
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 99999999999999999999888 89999999999999999999999999999999999999999999999999999999
Q ss_pred eccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccc-------------cccccc
Q 036932 501 LLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFS-------------AIFVGS 567 (790)
Q Consensus 501 ~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~ 567 (790)
++++|+++|.+|..++.+++|+.||+++|+++|.+|.++...................... ..+.+.
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999887654322111110000000000 000010
Q ss_pred ccccccc--cccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccC
Q 036932 568 IGTYYNS--TFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSY 644 (790)
Q Consensus 568 l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~ 644 (790)
.+..... .........+.+.+... .....++.|+.|||++|+++|.||.+++.+. |+.|||++
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~--------------~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~ 665 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTS--------------PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECC--------------CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCS
T ss_pred cchhhhccccccccccccceecccCc--------------hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcC
Confidence 0000000 00000001111111000 0113478899999999999999999999998 99999999
Q ss_pred CccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCcCCCCCCC
Q 036932 645 NFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTI 724 (790)
Q Consensus 645 N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~ 724 (790)
|+++|.||..|+++++|++||||+|+++|.||.+++.+++|++||+|+|+|+|.||+++||.+|...+|.||+++||+|+
T Consensus 666 N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l 745 (768)
T 3rgz_A 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL 745 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS
T ss_pred CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCC
Q 036932 725 NKSCNSTE 732 (790)
Q Consensus 725 ~~~c~~~~ 732 (790)
. .|....
T Consensus 746 ~-~C~~~~ 752 (768)
T 3rgz_A 746 P-RCDPSN 752 (768)
T ss_dssp C-CCCSCC
T ss_pred c-CCCCCc
Confidence 7 897554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.3e-73 Score=672.22 Aligned_cols=640 Identities=27% Similarity=0.362 Sum_probs=542.6
Q ss_pred CCCCCEEeCCCCCCCCC---cCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChh--hhcCCC
Q 036932 57 LKNLEALDLSYNNISGS---SESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPS--AITTLT 131 (790)
Q Consensus 57 l~~L~~L~Ls~n~i~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~ 131 (790)
-.+++.|+|+++.+.+. ++ ..+.++++|+.++++.+.+. .+|..|+++++|++|||++|.+++.+|. .+++++
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~-~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 126 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVS-SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHH-HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCT
T ss_pred CCcEEEEECCCCCcCCccCccC-hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCC
Confidence 36799999999999875 43 46889999999999998876 3668899999999999999999998888 999999
Q ss_pred CCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccC--CCCCCccceEEeCCCCCCC-CcchhhhCCCCCCE
Q 036932 132 SLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTE--NFLPTFQLKVLGLPNYNLK-VIPSFLLHQYDLKL 208 (790)
Q Consensus 132 ~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~--~~~~~~~L~~L~l~~n~l~-~lp~~l~~l~~L~~ 208 (790)
+|++|++++|.+++.++...+.++++|++|++++|......+.. .+..+++|++|++++|.+. ..|. ..+++|++
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~ 204 (768)
T 3rgz_A 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEF 204 (768)
T ss_dssp TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCE
T ss_pred CCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCE
Confidence 99999999999998887665689999999999999865444332 1678899999999999994 4433 78899999
Q ss_pred EEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCC
Q 036932 209 LDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDN 288 (790)
Q Consensus 209 L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n 288 (790)
|++++|.+++.+|. +.++++|++|++++|.+++..+..+..+++|++|++++|.+.+.+|.. .+++|++|++++|
T Consensus 205 L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n 279 (768)
T 3rgz_A 205 LDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAEN 279 (768)
T ss_dssp EECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSS
T ss_pred EECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCC
Confidence 99999999988887 568999999999999999877777889999999999999999888875 5899999999999
Q ss_pred ccccccchhhhcc-cccccccCcccccccccChhhhhcCCcCcEEEccCCcCccccccc-ccCCCCCcEEEcCCcccccc
Q 036932 289 RFEGYLPSSIGEM-KALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPK-YMNLTQLEFLYLENNKFSGK 366 (790)
Q Consensus 289 ~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~ 366 (790)
.+++.+|..+... ++|++|++++|++.+.+|.. +..+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.
T Consensus 280 ~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 280 KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred ccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence 9999999998875 99999999999999888876 478999999999999999888866 89999999999999999999
Q ss_pred cccccCCCC-CCcEEEcccccCcCCCchhhhh--ccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCccccc
Q 036932 367 IEEGLSNSN-ELNELDISNNLLSGHIPHWIGN--FSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSS 443 (790)
Q Consensus 367 ~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 443 (790)
+|..+..++ +|++|++++|++++.+|..++. ++. |+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC-CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC-ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH
Confidence 999998887 9999999999999999988877 666 999999999999999999999999999999999999999988
Q ss_pred c-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCC
Q 036932 444 F-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLG 522 (790)
Q Consensus 444 ~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 522 (790)
+ .+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.++..+++|++|++++|++++.+|.++..+++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 8 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccccccccccccccccc---CCCcc--------cccCc
Q 036932 523 VLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHY---GNGVY--------SIFPQ 591 (790)
Q Consensus 523 ~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~--------~~~~~ 591 (790)
+|++++|+++|.+|..++.+... ..++...+.+.+.++............ ....+ .....
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L---------~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSL---------IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTC---------CEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCC
T ss_pred EEECCCCcccCcCCHHHcCCCCC---------CEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccc
Confidence 99999999999999988765432 133444455555555332211111000 00000 00000
Q ss_pred ceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCc
Q 036932 592 LVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNR 670 (790)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~ 670 (790)
.........+.. ......++.+..++++.|.++|.+|..++.+. |+.||||+|+++|.+|.+|+++++|+.||||+|+
T Consensus 589 ~~~~~~~~~~~~-~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 589 GAGNLLEFQGIR-SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667 (768)
T ss_dssp SSEEEEECTTCC-GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccc-chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence 000000000000 00112355677789999999999999999998 9999999999999999999999999999999999
Q ss_pred ccccCCccccCCCCCCeEecccCcceecCCCC-CcCCCcCcccccCCc
Q 036932 671 LSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK-GQFATFDESSYRGNL 717 (790)
Q Consensus 671 lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gn~ 717 (790)
++|.||.+++.++.|++||||+|+++|.||.. +.+..+....+.+|+
T Consensus 668 l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred cCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 99999999999999999999999999999976 455555555566664
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.3e-59 Score=549.91 Aligned_cols=590 Identities=21% Similarity=0.219 Sum_probs=416.9
Q ss_pred eeeccCceeeeChhhhcCCCCCCEEEcCCCCCCccc--cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCc
Q 036932 17 LFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGIN 94 (790)
Q Consensus 17 l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~ 94 (790)
++..+.+++.++. .+. +++++|++++|.++.++ .|.++++|++|++++|.+++..+ ..+.++++|++|++++|.
T Consensus 9 ~~cs~~~L~~ip~-~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 9 ADCSHLKLTQVPD-DLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EECCSSCCSSCCS-CSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSSC
T ss_pred eECCCCCcccccc-ccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCCc
Confidence 3444445554443 121 45555555555555221 35555555555555555554332 345555555555555555
Q ss_pred CcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCccccc
Q 036932 95 IKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKT 174 (790)
Q Consensus 95 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 174 (790)
+.+..+.+|+++++|++|++++|++++..|..|+++++|++|++++|.+++..+ ..+
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~---------------------- 141 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL-GTQ---------------------- 141 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCC-CSS----------------------
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCc-hhh----------------------
Confidence 554444445555555555555555554444555555555555555555543322 233
Q ss_pred CCCCCCccceEEeCCCCCCCCcchh-h--hCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCC--
Q 036932 175 ENFLPTFQLKVLGLPNYNLKVIPSF-L--LHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPK-- 249 (790)
Q Consensus 175 ~~~~~~~~L~~L~l~~n~l~~lp~~-l--~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~-- 249 (790)
..+++|++|++++|.++.++.. + ..+++|+.|++++|.+++..|.. +..+++|+.+++.++.+........
T Consensus 142 ---~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~~ 217 (680)
T 1ziw_A 142 ---VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNVQLGPSLTEKLCL 217 (680)
T ss_dssp ---SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTCCCHHHHHHHHHH
T ss_pred ---cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh-hhhhhhhhhhhccccccChhhHHHHHH
Confidence 4444555555555555444332 2 23456777777777666444433 3466667777776665543211000
Q ss_pred -CCCCCCCEEEeecCCCCccCChhHHhhcc--cccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcC
Q 036932 250 -TKHDFLHHLDVSNNNLTGKLPEDMGIILQ--KLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGC 326 (790)
Q Consensus 250 -~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l 326 (790)
...++|+.|++++|.+.+..|..+. .++ +|++|++++|.+++..|..++.+++|++|++++|++.+. +...+.++
T Consensus 218 ~l~~~~L~~L~L~~n~l~~~~~~~~~-~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l 295 (680)
T 1ziw_A 218 ELANTSIRNLSLSNSQLSTTSNTTFL-GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGL 295 (680)
T ss_dssp HHTTSCCCEEECTTSCCCEECTTTTG-GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTC
T ss_pred HhhhccccEEEccCCcccccChhHhh-ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCC
Confidence 0235677888888877755555543 344 388888888888877777888888888888888888744 34445678
Q ss_pred CcCcEEEccCCcCccc-----cc----ccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCC--chhh
Q 036932 327 ISLGLLDLSGNNFYGQ-----IF----PKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI--PHWI 395 (790)
Q Consensus 327 ~~L~~L~L~~n~l~~~-----~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--p~~~ 395 (790)
++|++|++++|...+. +| ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.. +..+
T Consensus 296 ~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f 375 (680)
T 1ziw_A 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375 (680)
T ss_dssp TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTT
T ss_pred CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhh
Confidence 8888888887654431 22 26778899999999999999888888999999999999999865322 2233
Q ss_pred hhcc-CCCeEEEccCccccccchhhhccCCCCCEEecCCccccCccc-ccc-cccccceeeccCCcCccccchhhcCCCC
Q 036932 396 GNFS-SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMT-SSF-NLSSLEHLYLQMNSLSGPIPIALFRSSN 472 (790)
Q Consensus 396 ~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~ 472 (790)
..+. ..|+.|++++|.+++..|..+..+++|+.|++++|.+++.++ ..+ .+++|++|++++|++++..+..+..+++
T Consensus 376 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 455 (680)
T 1ziw_A 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455 (680)
T ss_dssp GGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTT
T ss_pred cccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcc
Confidence 3322 239999999999999999999999999999999999988665 455 8999999999999999888899999999
Q ss_pred CcEEeccCCccc--ccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccc
Q 036932 473 LITLDLRDNRFS--GVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNV 550 (790)
Q Consensus 473 L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~ 550 (790)
|+.|++++|.+. +.+|.++..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+...
T Consensus 456 L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-------- 527 (680)
T 1ziw_A 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG-------- 527 (680)
T ss_dssp CCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS--------
T ss_pred cccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC--------
Confidence 999999999987 5788999999999999999999998888889999999999999999984322111000
Q ss_pred cCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCCh
Q 036932 551 YLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPS 630 (790)
Q Consensus 551 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~ 630 (790)
+. ..-..++.|+.|+|++|+++ .+|.
T Consensus 528 ---------------------------------------~~--------------~~~~~l~~L~~L~L~~N~l~-~i~~ 553 (680)
T 1ziw_A 528 ---------------------------------------PI--------------YFLKGLSHLHILNLESNGFD-EIPV 553 (680)
T ss_dssp ---------------------------------------CC--------------CTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred ---------------------------------------cc--------------hhhcCCCCCCEEECCCCCCC-CCCH
Confidence 00 00034678999999999999 5665
Q ss_pred -hhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCcccc-CCCCCCeEecccCcceecCCC
Q 036932 631 -EIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLT-ELNFLSNFNVSFNNLSGLIPD 701 (790)
Q Consensus 631 -~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~-~l~~L~~L~ls~N~l~g~iP~ 701 (790)
.++.+. |+.|+|++|++++..|..|+++++|+.|||++|+|++.+|..+. .+++|+.+++++|++.|.++.
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 578887 99999999999988888899999999999999999999998888 789999999999999999875
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-58 Score=542.23 Aligned_cols=585 Identities=21% Similarity=0.214 Sum_probs=468.9
Q ss_pred CEEEcCCCCCCccc-cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCC
Q 036932 39 KILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYN 117 (790)
Q Consensus 39 ~~L~Ls~n~i~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 117 (790)
+.+|+++++++.++ .+. +++++|++++|.+++.++ ..+.++++|++|++++|.+.+..|.+|+++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 56777777777433 343 677777777777775443 45677777777777777777777777777777777777777
Q ss_pred CCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCC-Cc
Q 036932 118 QLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK-VI 196 (790)
Q Consensus 118 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~l 196 (790)
++++..+..|+++++|++|++++|.+++ +++..+.++++|++|+++ +|.+. ..
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls-------------------------~n~l~~~~ 137 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLS-------------------------HNGLSSTK 137 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCC-CCSCTTTTCTTCCEEECC-------------------------SSCCSCCC
T ss_pred ccCccChhhhccCCCCCEEECCCCccCc-cChhHccccCCCCEEECC-------------------------CCcccccC
Confidence 7775555567777777777777777753 333445555555555554 55553 34
Q ss_pred chhhhCCCCCCEEEccCCCCCCcCchhHh-hCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHh
Q 036932 197 PSFLLHQYDLKLLDLSGNNLVGDFPTWVL-RNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGI 275 (790)
Q Consensus 197 p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 275 (790)
|..+..+++|++|++++|.+++..+..+. ..+++|++|++++|.+++..+..+..+++|+.++++++.+.+.....+..
T Consensus 138 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~ 217 (680)
T 1ziw_A 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217 (680)
T ss_dssp CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHH
T ss_pred chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHH
Confidence 55678899999999999999865555432 25689999999999999887666778899999999999886433332221
Q ss_pred --hcccccEecccCCccccccchhhhcccc--cccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCC
Q 036932 276 --ILQKLLYIDMSDNRFEGYLPSSIGEMKA--LIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLT 351 (790)
Q Consensus 276 --~l~~L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 351 (790)
..++|++|++++|.+++..|.++..++. |++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..++
T Consensus 218 ~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (680)
T 1ziw_A 218 ELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF 296 (680)
T ss_dssp HHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT
T ss_pred HhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccCccChhhhcCCC
Confidence 2378999999999999999999998866 999999999998 55555568999999999999999999999999999
Q ss_pred CCcEEEcCCccccc-----ccc----cccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccc--hhhh
Q 036932 352 QLEFLYLENNKFSG-----KIE----EGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNI--PAQL 420 (790)
Q Consensus 352 ~L~~L~L~~n~l~~-----~~~----~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~--~~~~ 420 (790)
+|++|++++|...+ .+| ..+..+++|++|++++|.+.+..|..+..++. |++|++++|.+.... ...+
T Consensus 297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~l~~~~f 375 (680)
T 1ziw_A 297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN-LKYLSLSNSFTSLRTLTNETF 375 (680)
T ss_dssp TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTT-CCEEECTTCBSCCCEECTTTT
T ss_pred CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccC-CcEEECCCCchhhhhcchhhh
Confidence 99999999876543 223 26788999999999999999988889999988 999999999865332 2233
Q ss_pred cc--CCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccc-hhhcCCCCCcEEeccCCcccccCchhhhcCcc
Q 036932 421 LN--HGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIP-IALFRSSNLITLDLRDNRFSGVIPHQISESLT 496 (790)
Q Consensus 421 ~~--~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p-~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~ 496 (790)
.. .++|+.|++++|.+++..+..+ .+++|++|++++|.+++.+| ..+..+++|++|++++|++.+..+..+..+++
T Consensus 376 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 455 (680)
T 1ziw_A 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPS 455 (680)
T ss_dssp GGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTT
T ss_pred cccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcc
Confidence 33 3689999999999999988888 89999999999999998776 68899999999999999999999999999999
Q ss_pred ccEEeccCcccc--ccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccc
Q 036932 497 LRFLLLRGNYLE--GQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNS 574 (790)
Q Consensus 497 L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 574 (790)
|+.|++++|.+. +.+|..+..+++|+.|++++|++++..|..+.
T Consensus 456 L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~---------------------------------- 501 (680)
T 1ziw_A 456 LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE---------------------------------- 501 (680)
T ss_dssp CCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTT----------------------------------
T ss_pred cccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhc----------------------------------
Confidence 999999999987 57899999999999999999999954443332
Q ss_pred cccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCC--------hhhhhce-ecceeccCC
Q 036932 575 TFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIP--------SEIGDLQ-IRGLNLSYN 645 (790)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip--------~~~~~l~-L~~L~Ls~N 645 (790)
.++.|+.|++++|++++..+ ..++.+. |+.|+|++|
T Consensus 502 -----------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N 546 (680)
T 1ziw_A 502 -----------------------------------GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546 (680)
T ss_dssp -----------------------------------TCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred -----------------------------------cccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence 25789999999999986422 2356666 999999999
Q ss_pred ccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCC-C-cCCCcCcccccCCcCCCCCC
Q 036932 646 FLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK-G-QFATFDESSYRGNLHLCGPT 723 (790)
Q Consensus 646 ~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~-~~~~~~~~~~~gn~~lcg~~ 723 (790)
+++...+..|+++++|+.|||++|+|++..|..|..+++|+.|++++|++++..|.. + .+..+....+.|||+.|.++
T Consensus 547 ~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999555567999999999999999999888888999999999999999999977653 2 45667777789999999765
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-56 Score=536.20 Aligned_cols=568 Identities=21% Similarity=0.215 Sum_probs=401.8
Q ss_pred EEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccC-CcccCCCCCCcEEEccCCC
Q 036932 40 ILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHL-PDCLKNLSHLKVLDISYNQ 118 (790)
Q Consensus 40 ~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~ 118 (790)
..|.++++++.++. -.++|++|||++|.|++..+ ..+.++++|++|+|++|...+.+ |.+|+++++|++|+|++|+
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 44445555553333 33455555555555543322 34555555555555555333333 4555566666666666666
Q ss_pred CCCCChhhhcCCCCCCEEeCcCCcCccccchh-hhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCc-
Q 036932 119 LSGTLPSAITTLTSLEYLALLDNNFEGTFLLN-SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVI- 196 (790)
Q Consensus 119 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~l- 196 (790)
+.+..|..|+++++|++|+|++|.+++.++.. .+.++++|++|++++| .+..+
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-------------------------~l~~~~ 139 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-------------------------QIRSLY 139 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-------------------------CCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-------------------------cccccc
Confidence 65555555666666666666666555433321 1334444444444333 23222
Q ss_pred -chhhhCCCCCCEEEccCCCCCCcCchhHhhCC--CCCcEEeccCCcccccccCCCCCCCC------CCEEEeecCCCCc
Q 036932 197 -PSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNN--TKLEALFLTNNSFTGNLQLPKTKHDF------LHHLDVSNNNLTG 267 (790)
Q Consensus 197 -p~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~Ls~n~l~~ 267 (790)
+..+.++++|++|++++|.+++..+..+. .+ ++|+.|+++.|.+.+..+..+..++. |++|++++|.+++
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218 (844)
T ss_dssp CCGGGGTCSSCCEEEEESSCCCCCCSGGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred cchhHhhCCCCCEEECCCCcCCeeCHHHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence 24577888999999999999877666543 44 78999999999988765554444433 7888888887777
Q ss_pred cCChhHHhhc--ccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcC--CcCcEEEccCCcCcccc
Q 036932 268 KLPEDMGIIL--QKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGC--ISLGLLDLSGNNFYGQI 343 (790)
Q Consensus 268 ~~p~~~~~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l--~~L~~L~L~~n~l~~~~ 343 (790)
.++..+.... ..++.+.++.+.... .+..+.+. ......+.++ ++|+.|++++|.+.+..
T Consensus 219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~---------------~~~~~~l~-~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~ 282 (844)
T 3j0a_A 219 DITGNFSNAISKSQAFSLILAHHIMGA---------------GFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFVFSLN 282 (844)
T ss_dssp TTTSGGGGTSCSCCBSEEECCSSCCBC---------------SSSCSSST-TGGGTTTTTTTTSCCCEEECTTCCCCEEC
T ss_pred hHHHHHHhhcCcccccceecccccccc---------------cccccccC-CCChhhhhccccCCccEEECCCCcccccC
Confidence 7766654322 355666665433221 11122232 1222223333 67999999999998888
Q ss_pred cccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccC
Q 036932 344 FPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH 423 (790)
Q Consensus 344 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 423 (790)
+..+..+++|+.|++++|++++..|..|..+++|++|++++|.+++..|..+..++. |+.|++++|.+.+..+..+..+
T Consensus 283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK-VAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT-CCEEECCSCCCCCCCSSCSCSC
T ss_pred hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC-CCEEECCCCCCCccChhhhcCC
Confidence 888889999999999999998888888889999999999999998888888888888 9999999999988778888899
Q ss_pred CCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccC-chhhhcCccccEEec
Q 036932 424 GSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVI-PHQISESLTLRFLLL 502 (790)
Q Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L 502 (790)
++|++|++++|.+++... +++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..+..+++|+.|++
T Consensus 362 ~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~L 433 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILIL 433 (844)
T ss_dssp CCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEE
T ss_pred CCCCEEECCCCCCCcccC----CCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeC
Confidence 999999999999886433 678999999999998 55644 467999999999998643 234568999999999
Q ss_pred cCccccccCCc-cccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccccccccccccccccc
Q 036932 503 RGNYLEGQIPN-QLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHY 581 (790)
Q Consensus 503 ~~N~l~~~~~~-~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 581 (790)
++|++++..+. .+..+++|+.|++++|.+++..+.....
T Consensus 434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~---------------------------------------- 473 (844)
T 3j0a_A 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW---------------------------------------- 473 (844)
T ss_dssp ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS----------------------------------------
T ss_pred CCCcccccccccccccCCccccccCCCCccccccccccch----------------------------------------
Confidence 99999876543 4566899999999999997433211000
Q ss_pred CCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCC
Q 036932 582 GNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKW 660 (790)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~ 660 (790)
..| ..++.|+.|||++|++++.+|..++.+. |+.|+|++|+|++..|..+. ++
T Consensus 474 --~~~----------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~ 527 (844)
T 3j0a_A 474 --DVF----------------------EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--AN 527 (844)
T ss_dssp --SCS----------------------SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SC
T ss_pred --hhh----------------------cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cc
Confidence 000 2367899999999999998888888887 99999999999988888776 89
Q ss_pred CCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCcCCCCCCCCCCCCCCCCC
Q 036932 661 IESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTINKSCNSTEEV 734 (790)
Q Consensus 661 L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~~~~c~~~~~~ 734 (790)
|+.|||++|+|++.+|..+. .|+.|++++|++.|.++- .+|..+...++..+||.+....|..+...
T Consensus 528 L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~----~~f~~~~~~~~~~~~~~~~~~~C~~p~~~ 594 (844)
T 3j0a_A 528 LEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL----STFINWLNHTNVTIAGPPADIYCVYPDSF 594 (844)
T ss_dssp CCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC----CSHHHHHHHTTTTTCCCGGGCCCSSCSSS
T ss_pred ccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc----HHHHHHHHhcCcccccccccCccCCchhh
Confidence 99999999999999998765 788999999999999874 44444445677788888888889766543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.7e-55 Score=508.47 Aligned_cols=535 Identities=21% Similarity=0.193 Sum_probs=389.4
Q ss_pred EEEcCCCCCCcc-ccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCC
Q 036932 40 ILDLSGCGITTL-QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQ 118 (790)
Q Consensus 40 ~L~Ls~n~i~~~-~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 118 (790)
+++.++..++.+ ..+. +++++|++++|.+++..+ ..|.++++|++|++++|.+.+..|.+|+++++|++|++++|+
T Consensus 16 ~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcccCcCCCC--CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 556666655532 2343 356666776666664432 456666666666666666666666667777777777777777
Q ss_pred CCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcc-
Q 036932 119 LSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP- 197 (790)
Q Consensus 119 i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp- 197 (790)
+++..|..|+++++|++|++++|.+++ ++...+.++++|++|+++ +|.+..++
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~~l~~L~~L~L~-------------------------~n~l~~~~~ 146 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLG-------------------------SNHISSIKL 146 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSC-GGGSCCTTCTTCCEEECC-------------------------SSCCCCCCC
T ss_pred ccccChhhhcccccccEeeccccCccc-CCcchhccCCcccEEECC-------------------------CCcccccCc
Confidence 766666667777777777777776653 222233444444444443 34443321
Q ss_pred hhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCc--EEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHh
Q 036932 198 SFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLE--ALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGI 275 (790)
Q Consensus 198 ~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~--~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 275 (790)
..+..+++|++|++++|.+++..|. .+..+++|+ .|++++|.+++..+..+ ....|+.|++++|. .++..+ .
T Consensus 147 ~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~~~~L~~L~l~~~~---~~~~~~-~ 220 (606)
T 3t6q_A 147 PKGFPTEKLKVLDFQNNAIHYLSKE-DMSSLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNFGGTQ---NLLVIF-K 220 (606)
T ss_dssp CTTCCCTTCCEEECCSSCCCEECHH-HHHTTTTCCSEEEECTTCCCCEECTTTT-TTCEEEEEECTTCS---CHHHHH-H
T ss_pred ccccCCcccCEEEcccCcccccChh-hhhhhcccceeEEecCCCccCccChhHh-hhccccccccCCch---hHHHHh-h
Confidence 1223377889999999988844444 445777777 77777777776543332 23456666666554 122221 1
Q ss_pred hcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCC--cCcEEEccCCcCcccccccccCCCCC
Q 036932 276 ILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCI--SLGLLDLSGNNFYGQIFPKYMNLTQL 353 (790)
Q Consensus 276 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L 353 (790)
.+.++....+....+. .+... .++...+.++. +|+.|++++|.+.+..+..|..+++|
T Consensus 221 ~l~~~~l~~l~~~~~~-----------~~~~~---------~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 280 (606)
T 3t6q_A 221 GLKNSTIQSLWLGTFE-----------DMDDE---------DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280 (606)
T ss_dssp HTTTCEEEEEECCCCT-----------TSCCC---------CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTC
T ss_pred hccccchhheechhhc-----------ccccc---------ccChhHhchhhcCceeEEEeecCccCccCHHHhccccCC
Confidence 2222222221111111 11111 22233333333 67888888888887777778888888
Q ss_pred cEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchh-hhccCCCCCEEecC
Q 036932 354 EFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPA-QLLNHGSLNLLSVS 432 (790)
Q Consensus 354 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~l~ 432 (790)
++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..++. |+.|++++|.+.+.+|. .+..+++|++|+++
T Consensus 281 ~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~ 358 (606)
T 3t6q_A 281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLS 358 (606)
T ss_dssp SEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECC
T ss_pred CEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCc-CCEEECCCCCcccccchhhhhccCcCCEEECC
Confidence 88888888887 66777888888888888888888777778888877 88888888888866655 48889999999999
Q ss_pred CccccCcc--cccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCch-hhhcCccccEEeccCcccc
Q 036932 433 ENCLSGPM--TSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPH-QISESLTLRFLLLRGNYLE 508 (790)
Q Consensus 433 ~n~l~~~~--~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~ 508 (790)
+|.+++.. +..+ .+++|++|++++|++++..|..+..+++|+.|++++|++++..|. .+..+++|++|++++|.++
T Consensus 359 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 359 HDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp SSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred CCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccC
Confidence 99998876 5555 889999999999999988899999999999999999999987654 4889999999999999999
Q ss_pred ccCCccccCCCCCCEEEccCCcCcccC-C--hhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCc
Q 036932 509 GQIPNQLCQLRRLGVLDLSHNRISGSI-P--SCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGV 585 (790)
Q Consensus 509 ~~~~~~l~~l~~L~~L~Ls~N~l~g~~-p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 585 (790)
+..|..+..+++|+.|++++|++++.. | ..+
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---------------------------------------------- 472 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL---------------------------------------------- 472 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG----------------------------------------------
T ss_pred CcCHHHHhCCCCCCEEECCCCCCCccccccchhh----------------------------------------------
Confidence 999999999999999999999998521 2 111
Q ss_pred ccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEE
Q 036932 586 YSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESL 664 (790)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~L 664 (790)
..++.|+.|++++|++++.+|..++.+. |+.|+|++|++++.+|+.+++++.| .|
T Consensus 473 -----------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 473 -----------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp -----------------------GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred -----------------------ccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 2367899999999999999999999988 9999999999999999999999999 99
Q ss_pred EccCCcccccCCccccCCCCCCeEecccCcceecCCC
Q 036932 665 DLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD 701 (790)
Q Consensus 665 dLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 701 (790)
||++|++++.+|..+..+++|++|++++|+++|.++.
T Consensus 529 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 529 NLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp ECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred ECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999999999999999999999999999998874
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.6e-54 Score=499.02 Aligned_cols=517 Identities=19% Similarity=0.181 Sum_probs=338.3
Q ss_pred CCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEe
Q 036932 58 KNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA 137 (790)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 137 (790)
+++++|++++|.+++..+ ..+.++++|++|++++|.+.+..|.+|+++++|++|+|++|++++..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS-YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeCh-hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 444444444444443222 2344445555555555554444444555555555555555555544455555555555555
Q ss_pred CcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCC--CcchhhhCCCCCCEEEccCCC
Q 036932 138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK--VIPSFLLHQYDLKLLDLSGNN 215 (790)
Q Consensus 138 Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~Ls~n~ 215 (790)
+++|.+++. +...+.++++|++|++++ |.+. .+|..+..+++|++|++++|.
T Consensus 111 L~~n~l~~~-~~~~~~~l~~L~~L~L~~-------------------------n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 111 AVETKLASL-ESFPIGQLITLKKLNVAH-------------------------NFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CTTSCCCCS-SSSCCTTCTTCCEEECCS-------------------------SCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred ccCCccccc-cccccCCCCCCCEEeCCC-------------------------CcccceechHhHhhcCCCCEEEccCCc
Confidence 555555421 212233333333333322 2221 244555556666666666666
Q ss_pred CCCcCchhHhhCCCC----CcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccc
Q 036932 216 LVGDFPTWVLRNNTK----LEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFE 291 (790)
Q Consensus 216 l~~~ip~~~~~~l~~----L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~ 291 (790)
+++..+..+ +.+++ +++|++++|.+++..+..+... +|++|++++|.+.+......+..++.|+.+++..+.+.
T Consensus 165 l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 165 IQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp CCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred ceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence 654333322 22222 3356666666554433333222 56666666666653333333344566666555544332
Q ss_pred cccchhhhcccccccccCcccccccccChhhhhcCC--cCcEEEc-cCCcCcccccccccCCCCCcEEEcCCcccccccc
Q 036932 292 GYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCI--SLGLLDL-SGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIE 368 (790)
Q Consensus 292 ~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~--~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 368 (790)
+.. .+. .++...+.++. +++.+++ ..|.+.+.++. +..+++|+.|++++|.+. .+|
T Consensus 243 ~~~--------~l~-----------~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~ 301 (606)
T 3vq2_A 243 DER--------NLE-----------IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE 301 (606)
T ss_dssp TSC--------CCS-----------CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC
T ss_pred cCC--------ccc-----------ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh
Confidence 110 000 11111111111 3455555 55566665555 667777777777777775 344
Q ss_pred cccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcc--cccc-c
Q 036932 369 EGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPM--TSSF-N 445 (790)
Q Consensus 369 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~-~ 445 (790)
.+..+++|+.|++++|.+ +.+|. + .++. |+.|++++|...+.+ .+..+++|++|++++|.+++.. +..+ .
T Consensus 302 -~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~-L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 374 (606)
T 3vq2_A 302 -DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPF-LKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLG 374 (606)
T ss_dssp -CCCTTCCCSEEEEESCCC-SSCCC-C-CCSS-CCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHC
T ss_pred -hccccccCCEEEcccccC-ccccc-C-CCCc-cceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhcc
Confidence 666777777777777777 46663 3 5555 777777777554433 5667888999999999888763 4555 7
Q ss_pred ccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCc-hhhhcCccccEEeccCccccccCCccccCCCCCCEE
Q 036932 446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIP-HQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVL 524 (790)
Q Consensus 446 l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 524 (790)
+++|++|++++|.++ .+|..+..+++|+.|++++|++.+..| ..+..+++|++|++++|.+++..|..+..+++|+.|
T Consensus 375 ~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 375 TNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp CSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 889999999999988 467888899999999999999998877 678899999999999999999899999999999999
Q ss_pred EccCCcCccc-CChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccce
Q 036932 525 DLSHNRISGS-IPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRY 603 (790)
Q Consensus 525 ~Ls~N~l~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (790)
++++|++++. +|..+
T Consensus 454 ~l~~n~l~~~~~~~~~---------------------------------------------------------------- 469 (606)
T 3vq2_A 454 KMAGNSFKDNTLSNVF---------------------------------------------------------------- 469 (606)
T ss_dssp ECTTCEEGGGEECSCC----------------------------------------------------------------
T ss_pred ECCCCcCCCcchHHhh----------------------------------------------------------------
Confidence 9999998863 45432
Q ss_pred ecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCC
Q 036932 604 ELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEL 682 (790)
Q Consensus 604 ~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l 682 (790)
..++.|+.|++++|++++.+|..++.+. |+.|+|++|++++.+|..|+++++|+.|||++|+|+ .+|..+..+
T Consensus 470 -----~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l 543 (606)
T 3vq2_A 470 -----ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF 543 (606)
T ss_dssp -----TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGS
T ss_pred -----ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhh
Confidence 2357899999999999998999999887 999999999999999999999999999999999999 677779999
Q ss_pred C-CCCeEecccCcceecCCCC
Q 036932 683 N-FLSNFNVSFNNLSGLIPDK 702 (790)
Q Consensus 683 ~-~L~~L~ls~N~l~g~iP~~ 702 (790)
+ +|++|++++|++.|.+|..
T Consensus 544 ~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 544 PKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CTTCCEEECCSCCCCCSSTTH
T ss_pred cccCcEEEccCCCcccCCccH
Confidence 7 6999999999999988753
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.7e-53 Score=489.65 Aligned_cols=515 Identities=20% Similarity=0.170 Sum_probs=417.2
Q ss_pred CccceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCc--cccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEec
Q 036932 13 SNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITT--LQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFIL 90 (790)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L 90 (790)
.++.|++.++++..+.+.+|+++++|++|++++|++.. +.+|.++++|++|++++|.+.+..+ ..+..+++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccCh-hhhcccccccEeec
Confidence 45677777777777777777888888888888877772 3457777888888888877775433 45777778888888
Q ss_pred CCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCc--EEEccCCCC
Q 036932 91 RGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLE--VLLLSSRTN 168 (790)
Q Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~--~L~L~~n~~ 168 (790)
++|.+.+..+..++++++|++|++++|++++..+..+..+++|++|++++|.+++ +++..+..+++|+ .|++++|..
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE-ECHHHHHTTTTCCSEEEECTTCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc-cChhhhhhhcccceeEEecCCCcc
Confidence 8887776666677777888888888887776443444557778888888877773 4445677777777 777777765
Q ss_pred CcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCC----CcCchhHhhCCC--CCcEEeccCCccc
Q 036932 169 MLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLV----GDFPTWVLRNNT--KLEALFLTNNSFT 242 (790)
Q Consensus 169 ~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~----~~ip~~~~~~l~--~L~~L~L~~n~l~ 242 (790)
.... .. .....+|+.|++++|. .++..+..+.++....+....+. ..++...+..+. +|++|++++|.++
T Consensus 192 ~~~~-~~-~~~~~~L~~L~l~~~~--~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~ 267 (606)
T 3t6q_A 192 AGIE-PG-AFDSAVFQSLNFGGTQ--NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267 (606)
T ss_dssp CEEC-TT-TTTTCEEEEEECTTCS--CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS
T ss_pred CccC-hh-HhhhccccccccCCch--hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC
Confidence 4322 22 2333577777777775 44445555544443333322221 133333333333 7999999999999
Q ss_pred ccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhh
Q 036932 243 GNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL 322 (790)
Q Consensus 243 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~ 322 (790)
+..+..+..+++|++|++++|.++ .+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|...
T Consensus 268 ~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 268 NISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred ccCHHHhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 887777889999999999999999 8998774 58999999999999998888999999999999999999998999888
Q ss_pred hhcCCcCcEEEccCCcCcccc--cccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchh-hhhcc
Q 036932 323 LTGCISLGLLDLSGNNFYGQI--FPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHW-IGNFS 399 (790)
Q Consensus 323 ~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~ 399 (790)
+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+..|.. +..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 889999999999999998776 678899999999999999999888999999999999999999999876654 77787
Q ss_pred CCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcc---cccc-cccccceeeccCCcCccccchhhcCCCCCcE
Q 036932 400 SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPM---TSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLIT 475 (790)
Q Consensus 400 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~ 475 (790)
. |+.|++++|.+++..|..+..+++|++|++++|.+++.. +..+ .+++|++|++++|++++..|..+..+++|++
T Consensus 426 ~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 426 L-LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp T-CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred c-CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 7 999999999999999999999999999999999998732 2345 8899999999999999888999999999999
Q ss_pred EeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh
Q 036932 476 LDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537 (790)
Q Consensus 476 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~ 537 (790)
|++++|++++..|.++..+++| .|++++|++++..|..+..+++|+.|++++|++.+..+.
T Consensus 505 L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp EECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred EECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999999999999999999 999999999999999999999999999999999987764
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-52 Score=498.25 Aligned_cols=525 Identities=20% Similarity=0.202 Sum_probs=380.0
Q ss_pred EEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCC-hhhhcCCCCCCEEeCcC
Q 036932 62 ALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTL-PSAITTLTSLEYLALLD 140 (790)
Q Consensus 62 ~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~Ls~ 140 (790)
..|.+++.++.++. ..++|++|+|++|.+.+..|..|.++++|++|||++|...+.+ |..|+++++|++|+|++
T Consensus 8 ~~dcs~~~L~~vP~-----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ-----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCSSCCCS-----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCCCCCCC-----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 55666666664432 3456777777777777666667777777777777777544444 55667777777777777
Q ss_pred CcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCC-Ccch--hhhCCCCCCEEEccCCCCC
Q 036932 141 NNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK-VIPS--FLLHQYDLKLLDLSGNNLV 217 (790)
Q Consensus 141 n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~lp~--~l~~l~~L~~L~Ls~n~l~ 217 (790)
|.+++..| ..|.++++|++|++++| .+. .+|. .+..+++|++|++++|.++
T Consensus 83 N~l~~~~p-~~~~~l~~L~~L~Ls~n-------------------------~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~ 136 (844)
T 3j0a_A 83 SKIYFLHP-DAFQGLFHLFELRLYFC-------------------------GLSDAVLKDGYFRNLKALTRLDLSKNQIR 136 (844)
T ss_dssp CCCCEECT-TSSCSCSSCCCEECTTC-------------------------CCSSCCSTTCCCSSCSSCCEEEEESCCCC
T ss_pred CcCcccCH-hHccCCcccCEeeCcCC-------------------------CCCcccccCccccccCCCCEEECCCCccc
Confidence 66654322 33444444444444333 331 1222 2445556666666666555
Q ss_pred CcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhc--ccccEecccCCccccccc
Q 036932 218 GDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIIL--QKLLYIDMSDNRFEGYLP 295 (790)
Q Consensus 218 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--~~L~~L~Ls~n~l~~~~p 295 (790)
+..+...+.++ ++|++|++++|.+++..+..+.. + ++|+.|+++.|.+.+..|
T Consensus 137 ~~~~~~~~~~L------------------------~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~ 191 (844)
T 3j0a_A 137 SLYLHPSFGKL------------------------NSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVS 191 (844)
T ss_dssp CCCCCGGGGTC------------------------SSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCC
T ss_pred ccccchhHhhC------------------------CCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCccccccc
Confidence 43332233344 44555555555555444444432 3 566666666666665555
Q ss_pred hhhhcccc------cccccCcccccccccChhhhhc--CCcCcEEEccC---------CcCcccccccccCC--CCCcEE
Q 036932 296 SSIGEMKA------LIFLRLPKNNFSGELPAPLLTG--CISLGLLDLSG---------NNFYGQIFPKYMNL--TQLEFL 356 (790)
Q Consensus 296 ~~l~~l~~------L~~L~Ls~n~l~~~i~~~~~~~--l~~L~~L~L~~---------n~l~~~~~~~~~~l--~~L~~L 356 (790)
..++.+++ |++|++++|.+.+.++..+... ..+++.+.++. +.+.......|..+ ++|++|
T Consensus 192 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEE
Confidence 55444443 6667777766665555544322 24566666652 33333444455544 789999
Q ss_pred EcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932 357 YLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL 436 (790)
Q Consensus 357 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 436 (790)
++++|.+.+..+..+..+++|+.|++++|++++..|..+..++. |+.|++++|.+++..|..+..+++|++|++++|.+
T Consensus 272 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 350 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN-LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350 (844)
T ss_dssp ECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS-CCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCC
T ss_pred ECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC-CCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCC
Confidence 99999999988999999999999999999999888999999988 99999999999988899999999999999999999
Q ss_pred cCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccC-Ccc
Q 036932 437 SGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQI-PNQ 514 (790)
Q Consensus 437 ~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-~~~ 514 (790)
++..+..+ .+++|++|++++|.+++ ++ .+++|+.|++++|+++ .+|.. ..+++.|++++|++++.. +..
T Consensus 351 ~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~ 421 (844)
T 3j0a_A 351 AIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYF 421 (844)
T ss_dssp CCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHH
T ss_pred CccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhh
Confidence 98888877 89999999999999984 33 2789999999999998 44543 567999999999998643 334
Q ss_pred ccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceE
Q 036932 515 LCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVK 594 (790)
Q Consensus 515 l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (790)
+..+++|+.|++++|++++..+....
T Consensus 422 ~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------------------------------------ 447 (844)
T 3j0a_A 422 LLRVPHLQILILNQNRFSSCSGDQTP------------------------------------------------------ 447 (844)
T ss_dssp HTTCTTCCEEEEESCCCCCCCSSSSS------------------------------------------------------
T ss_pred hhcCCccceeeCCCCccccccccccc------------------------------------------------------
Confidence 56899999999999999854332100
Q ss_pred EEEeeccceecccCcccccceEEECCCCccc-----ccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccC
Q 036932 595 VEFMTKNRYELYNGSNIKYMVGLDLSCNQLT-----GGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSH 668 (790)
Q Consensus 595 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-----g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~ 668 (790)
..+++|+.|+|++|.++ +..|..+..+. |+.|+|++|+|++.+|..|+++++|+.|||++
T Consensus 448 --------------~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 513 (844)
T 3j0a_A 448 --------------SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513 (844)
T ss_dssp --------------CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred --------------ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence 12568999999999997 44556677777 99999999999999999999999999999999
Q ss_pred CcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCcCCCCCCC
Q 036932 669 NRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPTI 724 (790)
Q Consensus 669 N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~~ 724 (790)
|+|++.+|..+. ++|+.|||++|+++|.+|.. |..+....+.|||..|.+++
T Consensus 514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred CCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence 999998888776 89999999999999999964 55667777899999998764
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.2e-52 Score=481.70 Aligned_cols=528 Identities=19% Similarity=0.149 Sum_probs=405.2
Q ss_pred CCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCc
Q 036932 60 LEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALL 139 (790)
Q Consensus 60 L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 139 (790)
-++++.+++.++.++. .+ .++|++|++++|.+.+..+..|.++++|++|++++|++++..|..|+++++|++|+++
T Consensus 13 ~~~~~c~~~~l~~ip~--~~--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPD--DI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCSSCCT--TS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcccCCC--CC--CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 4678899988886553 22 2789999999999999988899999999999999999998889999999999999999
Q ss_pred CCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcc-hhhhCCCCCCEEEccCCCCCC
Q 036932 140 DNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP-SFLLHQYDLKLLDLSGNNLVG 218 (790)
Q Consensus 140 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~ 218 (790)
+|.+++..| ..+.++++|++|++++| .+..++ ..+..+++|++|++++|.+++
T Consensus 89 ~n~l~~~~p-~~~~~l~~L~~L~L~~n-------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 142 (606)
T 3vq2_A 89 GNPIQSFSP-GSFSGLTSLENLVAVET-------------------------KLASLESFPIGQLITLKKLNVAHNFIHS 142 (606)
T ss_dssp TCCCCCCCT-TSSTTCTTCCEEECTTS-------------------------CCCCSSSSCCTTCTTCCEEECCSSCCCC
T ss_pred CCcccccCh-hhcCCcccCCEEEccCC-------------------------ccccccccccCCCCCCCEEeCCCCcccc
Confidence 999985434 45666666666555544 444443 456777888888888888874
Q ss_pred -cCchhHhhCCCCCcEEeccCCcccccccCCCCCCCC----CCEEEeecCCCCccCChhHHhhcccccEecccCCccccc
Q 036932 219 -DFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDF----LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGY 293 (790)
Q Consensus 219 -~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~----L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~ 293 (790)
.+|..+ .++++|++|++++|.+++..+..+..+.+ +++|++++|.++ .++...+. ..+|++|+++
T Consensus 143 ~~lp~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~-~~~L~~L~L~------- 212 (606)
T 3vq2_A 143 CKLPAYF-SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQ-GIKLHELTLR------- 212 (606)
T ss_dssp CCCCGGG-GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEE-------
T ss_pred eechHhH-hhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCccccc-Cceeeeeecc-------
Confidence 456544 36777777777777666543333322222 224555555554 33333332 2244444444
Q ss_pred cchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcc---------cccccccCCCCCcEEEc-CCccc
Q 036932 294 LPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG---------QIFPKYMNLTQLEFLYL-ENNKF 363 (790)
Q Consensus 294 ~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~l~~L~~L~L-~~n~l 363 (790)
+|.+.+......+.++++|+.+++..+.+.. ..+..+..+ .++.+++ ..+.+
T Consensus 213 -----------------~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l-~l~~l~l~~~~~~ 274 (606)
T 3vq2_A 213 -----------------GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV-TIDEFRLTYTNDF 274 (606)
T ss_dssp -----------------SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS-EEEEEEECCCTTC
T ss_pred -----------------CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc-cHhheeccccccc
Confidence 4444433333333445555544443332221 112222222 5677777 77788
Q ss_pred ccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCccccc
Q 036932 364 SGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSS 443 (790)
Q Consensus 364 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 443 (790)
.+..|. +..+++|+.|++++|.+. .+| .+..++. |+.|++++|.+ +.+| .+ .+++|+.|++++|...+.. ..
T Consensus 275 ~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~-L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~ 346 (606)
T 3vq2_A 275 SDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFK-WQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KK 346 (606)
T ss_dssp CGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCC-CSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CC
T ss_pred cccccc-cccCCCCCEEEecCccch-hhh-hcccccc-CCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hh
Confidence 888887 889999999999999997 566 7888877 99999999999 6888 45 9999999999999665544 22
Q ss_pred ccccccceeeccCCcCccc--cchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCC-ccccCCCC
Q 036932 444 FNLSSLEHLYLQMNSLSGP--IPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIP-NQLCQLRR 520 (790)
Q Consensus 444 ~~l~~L~~L~L~~n~l~~~--~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~ 520 (790)
..+++|++|++++|++++. +|..+..+++|++|++++|++++ +|..+..+++|++|++++|++.+..| ..+..+++
T Consensus 347 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 2889999999999999866 48899999999999999999986 56889999999999999999998888 78999999
Q ss_pred CCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeec
Q 036932 521 LGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTK 600 (790)
Q Consensus 521 L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (790)
|+.|++++|++.+..|..+.
T Consensus 426 L~~L~l~~n~l~~~~~~~~~------------------------------------------------------------ 445 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFL------------------------------------------------------------ 445 (606)
T ss_dssp CCEEECTTSCCEECCTTTTT------------------------------------------------------------
T ss_pred CCEEECcCCCCCccchhhhc------------------------------------------------------------
Confidence 99999999999987776543
Q ss_pred cceecccCcccccceEEECCCCccccc-CChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCcc
Q 036932 601 NRYELYNGSNIKYMVGLDLSCNQLTGG-IPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPR 678 (790)
Q Consensus 601 ~~~~~~~~~~l~~L~~L~Ls~N~l~g~-ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~ 678 (790)
.++.|+.|++++|++++. +|..++.+. |+.|+|++|++++.+|..|+++++|+.|||++|++++.+|..
T Consensus 446 ---------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 516 (606)
T 3vq2_A 446 ---------GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516 (606)
T ss_dssp ---------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGG
T ss_pred ---------CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHH
Confidence 257899999999999984 788898887 999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCeEecccCcceecCCCC-CcCC-CcCcccccCCcCCCCCCC
Q 036932 679 LTELNFLSNFNVSFNNLSGLIPDK-GQFA-TFDESSYRGNLHLCGPTI 724 (790)
Q Consensus 679 l~~l~~L~~L~ls~N~l~g~iP~~-~~~~-~~~~~~~~gn~~lcg~~~ 724 (790)
+..+++|++||+++|+++ .+|.. ..+. .+....+.||+..|.++.
T Consensus 517 ~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 517 YNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred ccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999999999999999 57765 3332 355567889999987664
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.3e-49 Score=450.85 Aligned_cols=511 Identities=20% Similarity=0.208 Sum_probs=339.9
Q ss_pred CEEEcCCCCCCccc-cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCC
Q 036932 39 KILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYN 117 (790)
Q Consensus 39 ~~L~Ls~n~i~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 117 (790)
++++.++.+++.++ .+. +++++|++++|.+++..+ .+|..+++|++|++++|.+.+..+.+|+++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSSCCSSSC--SSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCccccCCCcc--ccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 34555555554222 222 356666666666553322 34555555555555555555555555666666666666666
Q ss_pred CCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcc
Q 036932 118 QLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP 197 (790)
Q Consensus 118 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp 197 (790)
++++..|..|+++++|++|++++|.+++ ++..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~----------------------------------------------- 118 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLAS-LENF----------------------------------------------- 118 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCC-STTC-----------------------------------------------
T ss_pred cCCccCHhhhcCcccccccccccccccc-CCCc-----------------------------------------------
Confidence 6655555555666666666665555542 1111
Q ss_pred hhhhCCCCCCEEEccCCCCCC-cCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCC----CEEEeecCCCCccCChh
Q 036932 198 SFLLHQYDLKLLDLSGNNLVG-DFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFL----HHLDVSNNNLTGKLPED 272 (790)
Q Consensus 198 ~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L----~~L~Ls~n~l~~~~p~~ 272 (790)
.+..+++|++|++++|.+++ .+|..+ .++++|++|++++|.+++..+..+..+++| +.+++++|.+.+ ++..
T Consensus 119 -~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~-~~~~ 195 (570)
T 2z63_A 119 -PIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPG 195 (570)
T ss_dssp -SCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTT
T ss_pred -cccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee-cCHH
Confidence 23445566666666666664 356544 467888888888777766543333344444 566666666653 3323
Q ss_pred HHhhcccccEecccCCcccc-ccchhhhcccccccccCcccccc-----cccChhhhhcCCcCcEEEccCCcCccccccc
Q 036932 273 MGIILQKLLYIDMSDNRFEG-YLPSSIGEMKALIFLRLPKNNFS-----GELPAPLLTGCISLGLLDLSGNNFYGQIFPK 346 (790)
Q Consensus 273 ~~~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~-----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 346 (790)
.+. ..+|++|++++|.... .++..+..++.++...+....+. ..++...+.+++
T Consensus 196 ~~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~------------------- 255 (570)
T 2z63_A 196 AFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC------------------- 255 (570)
T ss_dssp TTT-TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGG-------------------
T ss_pred Hhc-cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccc-------------------
Confidence 322 2256666666553221 23334444444443333221111 011111111111
Q ss_pred ccCCCCCcEEEcCCc-ccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCC
Q 036932 347 YMNLTQLEFLYLENN-KFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGS 425 (790)
Q Consensus 347 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 425 (790)
.+ .++.++++++ .+.+..+..+..+++|+.|++++|.+. .+|.++..+ . |+.|++++|.+. .+|. ..+++
T Consensus 256 --~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~-L~~L~l~~n~~~-~l~~--~~l~~ 326 (570)
T 2z63_A 256 --NL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-G-WQHLELVNCKFG-QFPT--LKLKS 326 (570)
T ss_dssp --GS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-C-CSEEEEESCBCS-SCCB--CBCSS
T ss_pred --cc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-C-ccEEeeccCccc-ccCc--ccccc
Confidence 11 2445555555 455556666666667777777777666 466666665 4 777777777666 4444 35677
Q ss_pred CCEEecCCccccCcccccccccccceeeccCCcCcccc--chhhcCCCCCcEEeccCCcccccCchhhhcCccccEEecc
Q 036932 426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPI--PIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLR 503 (790)
Q Consensus 426 L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 503 (790)
|+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+..+++|++|++++|++++..+. +..+++|+.|+++
T Consensus 327 L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~ 404 (570)
T 2z63_A 327 LKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ 404 (570)
T ss_dssp CCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred cCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEcc
Confidence 88888888887766554 46788999999999988654 78889999999999999999866554 8899999999999
Q ss_pred CccccccCC-ccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccC
Q 036932 504 GNYLEGQIP-NQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYG 582 (790)
Q Consensus 504 ~N~l~~~~~-~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 582 (790)
+|.+.+..| ..+..+++|+.|++++|++.+..|..+.
T Consensus 405 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------------ 442 (570)
T 2z63_A 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN------------------------------------------ 442 (570)
T ss_dssp TSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT------------------------------------------
T ss_pred CCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh------------------------------------------
Confidence 999987766 5688899999999999999877665432
Q ss_pred CCcccccCcceEEEEeeccceecccCcccccceEEECCCCccc-ccCChhhhhce-ecceeccCCccccccCccccCCCC
Q 036932 583 NGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLT-GGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKW 660 (790)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~ 660 (790)
.++.|+.|++++|+++ +.+|..++.+. |+.|+|++|++++.+|..|+++++
T Consensus 443 ---------------------------~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 443 ---------------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp ---------------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ---------------------------cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 2568999999999998 68998898887 999999999999999999999999
Q ss_pred CCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCC
Q 036932 661 IESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKG 703 (790)
Q Consensus 661 L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~ 703 (790)
|+.||+++|++++.+|..+..+++|+.|++++|+++|.+|...
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 9999999999999999999999999999999999999999753
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-47 Score=438.92 Aligned_cols=370 Identities=17% Similarity=0.146 Sum_probs=240.9
Q ss_pred CCCCCcEEeccCCcc-cccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccc
Q 036932 227 NNTKLEALFLTNNSF-TGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALI 305 (790)
Q Consensus 227 ~l~~L~~L~L~~n~l-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 305 (790)
++++|++|++++|.+ .......+..+++|++|++++|.+++.+|..+. .+++|++|+++.|.+.
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~-------------- 185 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLSESA-------------- 185 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSBST--------------
T ss_pred ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCceEecccCccc--------------
Confidence 556666666666652 222222344455555555555555544444432 2445555555555443
Q ss_pred cccCcccccccccChhhhhcCCcCcEEEccCCcCcccc---cccccCCCCCcEEEcCCcccccccc----cccCCCCCCc
Q 036932 306 FLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQI---FPKYMNLTQLEFLYLENNKFSGKIE----EGLSNSNELN 378 (790)
Q Consensus 306 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~ 378 (790)
.+|...+..+++|++|++++|.+.+.. ......+++|+.|++++|.+++..+ ..+..+++|+
T Consensus 186 -----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~ 254 (549)
T 2z81_A 186 -----------FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELS 254 (549)
T ss_dssp -----------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCC
T ss_pred -----------ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccc
Confidence 333333334444444444444444321 0111233444555555444433221 1223344455
Q ss_pred EEEcccccCcCCC------chhhhhccCCCeEEEccCccccc-----cchhhhccCCCCCEEecCCccccCcccccc-cc
Q 036932 379 ELDISNNLLSGHI------PHWIGNFSSDLKVLLMSKMFLKG-----NIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NL 446 (790)
Q Consensus 379 ~L~Ls~n~l~~~~------p~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l 446 (790)
.+++++|.+.+.. ...+..+.. ++.+++.++.+.. .++..+...++|+.|++++|.+.......+ .+
T Consensus 255 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 255 EVEFDDCTLNGLGDFNPSESDVVSELGK-VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp EEEEESCEEECCSCCCCCTTTCCCCCTT-CCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred ccccccccccccccccccchhhhhhhcc-cccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 5555555443311 011222233 5555555554332 123334445688899999988875444444 68
Q ss_pred cccceeeccCCcCccccch---hhcCCCCCcEEeccCCcccccCc--hhhhcCccccEEeccCccccccCCccccCCCCC
Q 036932 447 SSLEHLYLQMNSLSGPIPI---ALFRSSNLITLDLRDNRFSGVIP--HQISESLTLRFLLLRGNYLEGQIPNQLCQLRRL 521 (790)
Q Consensus 447 ~~L~~L~L~~n~l~~~~p~---~~~~~~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 521 (790)
++|++|++++|++++.+|. .+..+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L 412 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc
Confidence 8999999999999877653 36788999999999999986543 45888999999999999998 678888899999
Q ss_pred CEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeecc
Q 036932 522 GVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKN 601 (790)
Q Consensus 522 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (790)
+.|++++|+++ .+|.++
T Consensus 413 ~~L~Ls~N~l~-~l~~~~-------------------------------------------------------------- 429 (549)
T 2z81_A 413 RFLNLSSTGIR-VVKTCI-------------------------------------------------------------- 429 (549)
T ss_dssp CEEECTTSCCS-CCCTTS--------------------------------------------------------------
T ss_pred cEEECCCCCcc-cccchh--------------------------------------------------------------
Confidence 99999999987 344221
Q ss_pred ceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCcccc
Q 036932 602 RYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLT 680 (790)
Q Consensus 602 ~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~ 680 (790)
.+.|+.||+++|++++.+ +.+. |+.|+|++|+|+ .+|. .+.+++|+.|||++|+|++.+|..+.
T Consensus 430 ---------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~ 494 (549)
T 2z81_A 430 ---------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD 494 (549)
T ss_dssp ---------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG
T ss_pred ---------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHh
Confidence 247899999999999754 3454 999999999999 7886 57899999999999999999999999
Q ss_pred CCCCCCeEecccCcceecCCCC
Q 036932 681 ELNFLSNFNVSFNNLSGLIPDK 702 (790)
Q Consensus 681 ~l~~L~~L~ls~N~l~g~iP~~ 702 (790)
.+++|+.|++++|+++|.+|..
T Consensus 495 ~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 495 RLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp GCTTCCEEECCSSCBCCCHHHH
T ss_pred cCcccCEEEecCCCccCCCccH
Confidence 9999999999999999999843
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-46 Score=433.50 Aligned_cols=506 Identities=21% Similarity=0.157 Sum_probs=392.8
Q ss_pred cceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCcc--ccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCC
Q 036932 15 KWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRG 92 (790)
Q Consensus 15 ~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~ 92 (790)
+.+...+.+++.++. .+ .+++++|++++|+++.+ .+|.++++|++|++++|.+++.. ...|.++++|++|++++
T Consensus 10 ~~~~c~~~~l~~ip~-~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELNFYKIPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCSSCCSSCCS-SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTT
T ss_pred cEEEeCCCCccccCC-Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccC-cccccCchhCCEEeCcC
Confidence 445555566666664 22 25678888888887733 35777888888888888777543 34677788888888888
Q ss_pred CcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCcc-ccchhhhhCCCCCcEEEccCCCCCcc
Q 036932 93 INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEG-TFLLNSLANHSKLEVLLLSSRTNMLS 171 (790)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~l~~l~~L~~L~L~~n~~~~~ 171 (790)
|.+.+..|.+|+++++|++|++++|++++..+..++++++|++|++++|.+++ .+| ..+.++++|++|++++|... .
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp-~~~~~l~~L~~L~l~~n~l~-~ 163 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNKIQ-S 163 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECTTSCCC-E
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecCh-hhhcccCCCCEEeCcCCccc-e
Confidence 88777777778888888888888888776555567788888888888887765 234 45777888888888777643 2
Q ss_pred cccCCCCCCccc----eEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccc----
Q 036932 172 VKTENFLPTFQL----KVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTG---- 243 (790)
Q Consensus 172 ~~~~~~~~~~~L----~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~---- 243 (790)
+....+..+.+| +.+++++|.+..++.......+|+.|++++|..........+..++.++...+....+..
T Consensus 164 ~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 243 (570)
T 2z63_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243 (570)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred ecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence 333345555556 678888888866655444445788888888755433223334567777766654333221
Q ss_pred --cccCCCCCCC--CCCEEEeecC-CCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCccccccccc
Q 036932 244 --NLQLPKTKHD--FLHHLDVSNN-NLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGEL 318 (790)
Q Consensus 244 --~~~~~~~~~~--~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i 318 (790)
.....+..++ .++.++++++ .+.+.+|..+ ..+++|++|++++|.++ .+|..+..+ +|++|++++|.+. .+
T Consensus 244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l 319 (570)
T 2z63_A 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QF 319 (570)
T ss_dssp EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT-GGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SC
T ss_pred hhcchhhhccccccchhhhhhhcchhhhhhchhhh-cCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-cc
Confidence 1111122222 3567888887 6666666665 45899999999999998 688888888 9999999999998 78
Q ss_pred ChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCccccccc--ccccCCCCCCcEEEcccccCcCCCchhhh
Q 036932 319 PAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKI--EEGLSNSNELNELDISNNLLSGHIPHWIG 396 (790)
Q Consensus 319 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~ 396 (790)
|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+. |..+.
T Consensus 320 ~~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~ 393 (570)
T 2z63_A 320 PT---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFL 393 (570)
T ss_dssp CB---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEE
T ss_pred Cc---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-ccccc
Confidence 76 3688999999999998876654 67899999999999998654 67788999999999999999854 44488
Q ss_pred hccCCCeEEEccCccccccch-hhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCc-cccchhhcCCCCC
Q 036932 397 NFSSDLKVLLMSKMFLKGNIP-AQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLS-GPIPIALFRSSNL 473 (790)
Q Consensus 397 ~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~-~~~p~~~~~~~~L 473 (790)
.++. |+.|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+ .+++|++|++++|.++ +.+|..+..+++|
T Consensus 394 ~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 394 GLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp TCTT-CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred ccCC-CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 8888 9999999999998766 578899999999999999999888888 8999999999999998 5789999999999
Q ss_pred cEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh
Q 036932 474 ITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537 (790)
Q Consensus 474 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~ 537 (790)
++|++++|++++..|.++..+++|++|++++|++++..|..+..+++|+.|++++|+++|.+|.
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999999999999999999999999999999888999999999999999999999885
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-46 Score=427.36 Aligned_cols=483 Identities=19% Similarity=0.202 Sum_probs=356.0
Q ss_pred CCEEEcCCCCCCccc-cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccC
Q 036932 38 LKILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISY 116 (790)
Q Consensus 38 L~~L~Ls~n~i~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 116 (790)
..+.|.+++.++.++ .+. ++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|.+|+++++|++||+++
T Consensus 7 ~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 7 SGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp TSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCccccccccCC--CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 334566666666333 332 567777777776664432 3566677777777777777766666777777777777777
Q ss_pred CCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCC-C
Q 036932 117 NQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLK-V 195 (790)
Q Consensus 117 n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~ 195 (790)
|++++..|..|+++++|++|++++|.+++.-.+..+.++++|++|++++|.....++...+..+++|++|++++|.+. .
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 777766666677777777777777777642222356677777777777776555665556777777777777777774 4
Q ss_pred cchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCC---CCCCCCCCEEEeecCCCCccCChh
Q 036932 196 IPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLP---KTKHDFLHHLDVSNNNLTGKLPED 272 (790)
Q Consensus 196 lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~p~~ 272 (790)
.|..+..+++|+.|+++.|.+. .+|.+++..+++|++|++++|.+++....+ ...+++|+.|++++|.+.+..+..
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 242 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHH
T ss_pred ChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHH
Confidence 6777788888888888888876 677777777888888888888887753111 235778888999888887655544
Q ss_pred HH---hhcccccEecccCCcccccc------chhhhcccccccccCcccccccc-----cChhhhhcCCcCcEEEccCCc
Q 036932 273 MG---IILQKLLYIDMSDNRFEGYL------PSSIGEMKALIFLRLPKNNFSGE-----LPAPLLTGCISLGLLDLSGNN 338 (790)
Q Consensus 273 ~~---~~l~~L~~L~Ls~n~l~~~~------p~~l~~l~~L~~L~Ls~n~l~~~-----i~~~~~~~l~~L~~L~L~~n~ 338 (790)
+. ..+++|+.+++++|.+.+.. ...+..+.+|+.|++.++.+... ++ ..+...++|+.|++++|.
T Consensus 243 l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~-~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS-TVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC-HHHHHSTTCCEEEEESSC
T ss_pred HHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch-hhhhhcccceEEEeccCc
Confidence 32 23568888888888876531 12345567788888887765421 11 123446789999999998
Q ss_pred Ccccccccc-cCCCCCcEEEcCCcccccccc---cccCCCCCCcEEEcccccCcCCCc--hhhhhccCCCeEEEccCccc
Q 036932 339 FYGQIFPKY-MNLTQLEFLYLENNKFSGKIE---EGLSNSNELNELDISNNLLSGHIP--HWIGNFSSDLKVLLMSKMFL 412 (790)
Q Consensus 339 l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~~~~~L~~L~l~~n~l 412 (790)
+. .+|..+ ..+++|++|++++|++++..| ..+..+++|++|++++|++++..+ ..+..++. |+.|++++|++
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~-L~~L~Ls~N~l 399 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN-LTSLDISRNTF 399 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTT-CCEEECTTCCC
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCC-CCEEECCCCCC
Confidence 87 445544 578999999999999887654 346788899999999999885432 45777777 99999999988
Q ss_pred cccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhh
Q 036932 413 KGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQIS 492 (790)
Q Consensus 413 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~ 492 (790)
+ .+|..+..+++|++|++++|.+++..... .++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ..
T Consensus 400 ~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~ 470 (549)
T 2z81_A 400 H-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-AS 470 (549)
T ss_dssp C-CCCSCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred c-cCChhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cc
Confidence 8 67888888999999999999988644332 368999999999999643 57899999999999998 5665 46
Q ss_pred cCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932 493 ESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536 (790)
Q Consensus 493 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p 536 (790)
.+++|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 78999999999999999999999999999999999999998887
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.1e-47 Score=444.20 Aligned_cols=482 Identities=17% Similarity=0.193 Sum_probs=306.2
Q ss_pred CCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCC------CC------CChhhhcCCCCCCEEeCcCCcCccccchh
Q 036932 83 KNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQL------SG------TLPSAITTLTSLEYLALLDNNFEGTFLLN 150 (790)
Q Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i------~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 150 (790)
.+++.|+|+++.+.|.+|++++++++|++|||++|.+ .+ .+|... +..|+ +++++|.+.+.++..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 5788888988888888888888999999999988865 22 333333 34555 666666666554432
Q ss_pred hhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCC--CCCCCCcchhhhCCCCCCEEEccCCCCCCc-CchhHhhC
Q 036932 151 SLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLP--NYNLKVIPSFLLHQYDLKLLDLSGNNLVGD-FPTWVLRN 227 (790)
Q Consensus 151 ~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~--~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~-ip~~~~~~ 227 (790)
....+..+..+++..... .......++.+.+. .|+++.+|..+.++++|++|+|++|.+++. ++...
T Consensus 158 ~~~~~~~l~~~~l~~~~~-------~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--- 227 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSI-------KKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAW--- 227 (636)
T ss_dssp SCHHHHHHHHHCTTSCCC-------CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSC---
T ss_pred HHHHHHHHhhcCcccccc-------ccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccc---
Confidence 111111111111111000 00000111111111 233322444444444555555555444432 00000
Q ss_pred CCCCcEEeccCCcccccccCCCC--CCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCc-ccc-ccchhhhcc--
Q 036932 228 NTKLEALFLTNNSFTGNLQLPKT--KHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNR-FEG-YLPSSIGEM-- 301 (790)
Q Consensus 228 l~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l-- 301 (790)
.+ -......+..+..+. .+++|++|++++|.+.|.+|..+. .+++|++|++++|+ +++ .+|..++.+
T Consensus 228 ~~------~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~ 300 (636)
T 4eco_A 228 EN------ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALAD 300 (636)
T ss_dssp SC------TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHH
T ss_pred cc------cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhc
Confidence 00 000000001334444 667777777777777777776664 47777777777776 776 677777665
Q ss_pred ----cccccccCcccccccccCh-hhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCC
Q 036932 302 ----KALIFLRLPKNNFSGELPA-PLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNE 376 (790)
Q Consensus 302 ----~~L~~L~Ls~n~l~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 376 (790)
++|++|++++|+++ .+|. ..+..+++|++|++++|.+.|.+| .+..+++|++|++++|.++ .+|..+..+++
T Consensus 301 ~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 377 (636)
T 4eco_A 301 APVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTE 377 (636)
T ss_dssp SGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred cccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcc
Confidence 77777777777777 6765 234567777777777777776666 6677777777777777777 66666777777
Q ss_pred -CcEEEcccccCcCCCchhhhhcc--CCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceee
Q 036932 377 -LNELDISNNLLSGHIPHWIGNFS--SDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLY 453 (790)
Q Consensus 377 -L~~L~Ls~n~l~~~~p~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 453 (790)
|++|++++|+++ .+|..+.... . |+.|++++|.+++.+|..+..+ ....+.+++|++|+
T Consensus 378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~-L~~L~Ls~N~l~~~~p~~l~~~----------------~~~~~~~~~L~~L~ 439 (636)
T 4eco_A 378 QVENLSFAHNKLK-YIPNIFDAKSVSV-MSAIDFSYNEIGSVDGKNFDPL----------------DPTPFKGINVSSIN 439 (636)
T ss_dssp TCCEEECCSSCCS-SCCSCCCTTCSSC-EEEEECCSSCTTTTTTCSSCTT----------------CSSCCCCCCEEEEE
T ss_pred cCcEEEccCCcCc-ccchhhhhcccCc-cCEEECcCCcCCCcchhhhccc----------------ccccccCCCCCEEE
Confidence 777777777777 6666555443 3 5566666665555555444310 00111345677777
Q ss_pred ccCCcCccccch-hhcCCCCCcEEeccCCcccccCchh-hhc-------CccccEEeccCccccccCCcccc--CCCCCC
Q 036932 454 LQMNSLSGPIPI-ALFRSSNLITLDLRDNRFSGVIPHQ-ISE-------SLTLRFLLLRGNYLEGQIPNQLC--QLRRLG 522 (790)
Q Consensus 454 L~~n~l~~~~p~-~~~~~~~L~~L~L~~N~l~~~~p~~-~~~-------l~~L~~L~L~~N~l~~~~~~~l~--~l~~L~ 522 (790)
+++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +.. +++|+.|++++|+++ .+|..+. .+++|+
T Consensus 440 Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 516 (636)
T 4eco_A 440 LSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLV 516 (636)
T ss_dssp CCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCC
T ss_pred CcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcC
Confidence 7777777 3443 3445777788888888777 44443 332 238999999999998 6777776 899999
Q ss_pred EEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccc
Q 036932 523 VLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNR 602 (790)
Q Consensus 523 ~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (790)
.|+|++|++++ +|..++.
T Consensus 517 ~L~Ls~N~l~~-ip~~~~~------------------------------------------------------------- 534 (636)
T 4eco_A 517 GIDLSYNSFSK-FPTQPLN------------------------------------------------------------- 534 (636)
T ss_dssp EEECCSSCCSS-CCCGGGG-------------------------------------------------------------
T ss_pred EEECCCCCCCC-cChhhhc-------------------------------------------------------------
Confidence 99999999986 7765532
Q ss_pred eecccCcccccceEEECCCCcccccCChhhhhceecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCC
Q 036932 603 YELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEL 682 (790)
Q Consensus 603 ~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l 682 (790)
++.|+.|+|++|+ ++++|++.+.+|..++++++|+.|||++|+| +.+|..+.
T Consensus 535 --------l~~L~~L~Ls~N~-----------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-- 586 (636)
T 4eco_A 535 --------SSTLKGFGIRNQR-----------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-- 586 (636)
T ss_dssp --------CSSCCEEECCSCB-----------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--
T ss_pred --------CCCCCEEECCCCc-----------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--
Confidence 5688899998887 5788899999999999999999999999999 68888876
Q ss_pred CCCCeEecccCcceec
Q 036932 683 NFLSNFNVSFNNLSGL 698 (790)
Q Consensus 683 ~~L~~L~ls~N~l~g~ 698 (790)
++|+.||+++|++...
T Consensus 587 ~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 587 PNISVLDIKDNPNISI 602 (636)
T ss_dssp TTCCEEECCSCTTCEE
T ss_pred CcCCEEECcCCCCccc
Confidence 7899999999988753
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-44 Score=422.24 Aligned_cols=550 Identities=20% Similarity=0.147 Sum_probs=342.9
Q ss_pred CCCCCCCCccccCccceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCcc--ccCcCCCCCCEEeCCCCCCCCCcCccc
Q 036932 1 MPTSVGPKLEQRSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQG 78 (790)
Q Consensus 1 ~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~l~~l~~L~~L~Ls~n~i~~~~~~~~ 78 (790)
+|....|..+...-+++...+-+++.+|.. + -+++++|||++|+|+.+ .+|.++++|++|+|++|+|+++. ..+
T Consensus 20 ~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~-l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~ 95 (635)
T 4g8a_A 20 IPESWEPCVEVVPNITYQCMELNFYKIPDN-L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGA 95 (635)
T ss_dssp -----CCSEEEETTTEEECTTSCCSSCCSS-S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTT
T ss_pred CCCCCCCccccCCCCEEECCCCCcCccCCC-C--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhH
Confidence 355566666666666777777788888742 2 24799999999999944 36999999999999999998654 367
Q ss_pred cCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCC
Q 036932 79 VCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKL 158 (790)
Q Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L 158 (790)
|.++++|++|+|++|++.+..+.+|.++++|++|+|++|++++..+..|+++++|++|++++|.+++...+..+.++++|
T Consensus 96 f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 175 (635)
T 4g8a_A 96 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence 88999999999999999988788899999999999999999987777899999999999999998764444567888999
Q ss_pred cEEEccCCCCCcccccCCCCCCc----cceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEE
Q 036932 159 EVLLLSSRTNMLSVKTENFLPTF----QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEAL 234 (790)
Q Consensus 159 ~~L~L~~n~~~~~~~~~~~~~~~----~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L 234 (790)
++|++++|..... ....+..+. ....++++.|.+..++........++.+++++|.....++...+..+..++..
T Consensus 176 ~~L~L~~N~l~~~-~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 176 EHLDLSSNKIQSI-YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp CEEECCSSCCCEE-CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred hhhcccCcccccc-ccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccc
Confidence 9999988875432 222333222 23456777777776666655556667777777765545555555566666655
Q ss_pred eccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccc---cccchhhhcccccccccCcc
Q 036932 235 FLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFE---GYLPSSIGEMKALIFLRLPK 311 (790)
Q Consensus 235 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~L~~L~Ls~ 311 (790)
.+..+...... .+. ......+.....+...++..+... ...+..+..
T Consensus 255 ~l~~~~~~~~~------------------~l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~----------- 304 (635)
T 4g8a_A 255 RLVLGEFRNEG------------------NLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNC----------- 304 (635)
T ss_dssp EEEEECCTTSC------------------CCS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGG-----------
T ss_pred ccccccccccc------------------ccc-cccccccccccchhhhhhhhhhhcccccchhhhhhh-----------
Confidence 54433222110 011 011111112333333333322211 011222223
Q ss_pred cccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCC
Q 036932 312 NNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI 391 (790)
Q Consensus 312 n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 391 (790)
+.+++.+.+.++.+.... .+.....++.|++.+|.+.+..+. .++.|+.++++.|.+....
T Consensus 305 --------------~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~ 365 (635)
T 4g8a_A 305 --------------LTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF 365 (635)
T ss_dssp --------------GTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC
T ss_pred --------------hccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc
Confidence 334444444444443221 223344555555555554433221 2344555555555443211
Q ss_pred chhhhhccCCCeEEEccCcccc--ccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcC
Q 036932 392 PHWIGNFSSDLKVLLMSKMFLK--GNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFR 469 (790)
Q Consensus 392 p~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 469 (790)
....++. ++.++++.|.+. +..+..+.. +.+|+++++..|... ..+..+..
T Consensus 366 --~~~~l~~-L~~L~ls~n~l~~~~~~~~~~~~-----------------------~~~L~~L~~~~~~~~-~~~~~~~~ 418 (635)
T 4g8a_A 366 --SEVDLPS-LEFLDLSRNGLSFKGCCSQSDFG-----------------------TISLKYLDLSFNGVI-TMSSNFLG 418 (635)
T ss_dssp --CCCBCTT-CCEEECCSSCCBEEEECCHHHHS-----------------------CSCCCEEECCSCSEE-EECSCCTT
T ss_pred --ccccccc-cccchhhccccccccccccchhh-----------------------hhhhhhhhccccccc-cccccccc
Confidence 1111222 333333333221 112223333 344455555554444 23344455
Q ss_pred CCCCcEEeccCCcccccCc-hhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCccc-CChhHHHHHHhhc
Q 036932 470 SSNLITLDLRDNRFSGVIP-HQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS-IPSCLTIMLLWVA 547 (790)
Q Consensus 470 ~~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~-~p~~~~~~~~~~~ 547 (790)
+++|+.++++.|+.....+ ..+..+.+++.++++.|.+.+..+..+..+++|+.|++++|++.+. +|..+
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~-------- 490 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-------- 490 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--------
T ss_pred cccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh--------
Confidence 5555666665555443333 2345566666666666666666666666667777777777664322 22211
Q ss_pred ccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCccccc
Q 036932 548 GNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGG 627 (790)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ 627 (790)
..++.|+.|||++|++++.
T Consensus 491 -------------------------------------------------------------~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 491 -------------------------------------------------------------TELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp -------------------------------------------------------------TTCTTCCEEECTTSCCCEE
T ss_pred -------------------------------------------------------------hhccccCEEECCCCccCCc
Confidence 1245677777777777777
Q ss_pred CChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCC-CCCCeEecccCcceecCC
Q 036932 628 IPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEL-NFLSNFNVSFNNLSGLIP 700 (790)
Q Consensus 628 ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l-~~L~~L~ls~N~l~g~iP 700 (790)
+|..++.+. |++|+|++|+|++..|..|+++++|+.|||++|+|++.+|..+..+ ++|++|+|++|+++|.+.
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 777888887 9999999999999999999999999999999999999999999998 689999999999999875
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-47 Score=441.15 Aligned_cols=363 Identities=18% Similarity=0.228 Sum_probs=313.8
Q ss_pred CCccccccchhhhcccccccccCcccccccc-----------------cChhhh-hcCCcCcEEEccCCcCccccccccc
Q 036932 287 DNRFEGYLPSSIGEMKALIFLRLPKNNFSGE-----------------LPAPLL-TGCISLGLLDLSGNNFYGQIFPKYM 348 (790)
Q Consensus 287 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------i~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~ 348 (790)
.|.+++ +|..++++++|++|++++|.++|. +|..+. .++++|++|++++|.+.+.+|..+.
T Consensus 192 ~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~ 270 (636)
T 4eco_A 192 SNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270 (636)
T ss_dssp SCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred cCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHh
Confidence 678888 899999999999999999999975 887642 2799999999999999999999999
Q ss_pred CCCCCcEEEcCCcc-ccc-ccccccCCC------CCCcEEEcccccCcCCCch--hhhhccCCCeEEEccCccccccchh
Q 036932 349 NLTQLEFLYLENNK-FSG-KIEEGLSNS------NELNELDISNNLLSGHIPH--WIGNFSSDLKVLLMSKMFLKGNIPA 418 (790)
Q Consensus 349 ~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~Ls~n~l~~~~p~--~~~~~~~~L~~L~l~~n~l~~~~~~ 418 (790)
++++|++|++++|+ +++ .+|..+..+ ++|++|++++|+++ .+|. .++.++. |+.|++++|.++|.+|
T Consensus 271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~-L~~L~L~~N~l~g~ip- 347 (636)
T 4eco_A 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK-LGMLECLYNQLEGKLP- 347 (636)
T ss_dssp TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT-CCEEECCSCCCEEECC-
T ss_pred cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC-CCEEeCcCCcCccchh-
Confidence 99999999999998 988 788877765 89999999999999 8888 8999988 9999999999999999
Q ss_pred hhccCCCCCEEecCCccccCcccccc-cccc-cceeeccCCcCccccchhhcCCC--CCcEEeccCCcccccCchhhh--
Q 036932 419 QLLNHGSLNLLSVSENCLSGPMTSSF-NLSS-LEHLYLQMNSLSGPIPIALFRSS--NLITLDLRDNRFSGVIPHQIS-- 492 (790)
Q Consensus 419 ~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~-L~~L~L~~n~l~~~~p~~~~~~~--~L~~L~L~~N~l~~~~p~~~~-- 492 (790)
.+..+++|++|++++|.++ .+|..+ .+++ |++|++++|.++ .+|..+..++ +|+.|++++|++++.+|.++.
T Consensus 348 ~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 8999999999999999999 556556 8888 999999999999 7888877655 899999999999999998888
Q ss_pred -----cCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccc
Q 036932 493 -----ESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGS 567 (790)
Q Consensus 493 -----~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (790)
.+++|++|++++|++++..+..+..+++|+.|+|++|+++ .+|.......
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~------------------------ 480 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDE------------------------ 480 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEET------------------------
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccc------------------------
Confidence 7889999999999999555555667999999999999999 7775432100
Q ss_pred ccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhh--hce-ecceeccC
Q 036932 568 IGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIG--DLQ-IRGLNLSY 644 (790)
Q Consensus 568 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~--~l~-L~~L~Ls~ 644 (790)
. .....++.|+.|+|++|+++ .+|..+. .+. |+.|+|++
T Consensus 481 ----------------------~---------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 481 ----------------------N---------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp ----------------------T---------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCS
T ss_pred ----------------------c---------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCC
Confidence 0 00023558999999999999 8999887 776 99999999
Q ss_pred CccccccCccccCCCCCCEEEc------cCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCcC
Q 036932 645 NFLSGSIPGSFSNLKWIESLDL------SHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLH 718 (790)
Q Consensus 645 N~l~g~ip~~l~~l~~L~~LdL------s~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~ 718 (790)
|++++ +|..++++++|+.|+| ++|++.+.+|.++..+++|++|+|++|++ +.||..- +..+....+.+|+.
T Consensus 523 N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKI-TPNISVLDIKDNPN 599 (636)
T ss_dssp SCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CTTCCEEECCSCTT
T ss_pred CCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhH-hCcCCEEECcCCCC
Confidence 99998 9999999999999999 56889999999999999999999999999 8999762 25666667788887
Q ss_pred CCC
Q 036932 719 LCG 721 (790)
Q Consensus 719 lcg 721 (790)
.|-
T Consensus 600 ~~~ 602 (636)
T 4eco_A 600 ISI 602 (636)
T ss_dssp CEE
T ss_pred ccc
Confidence 763
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-45 Score=418.75 Aligned_cols=459 Identities=21% Similarity=0.208 Sum_probs=254.3
Q ss_pred EEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCC
Q 036932 87 EFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSR 166 (790)
Q Consensus 87 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n 166 (790)
+|++++|+++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|.+++..| ..|.++++|++|++++|
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSS
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCC
Confidence 3444444444 2333333 455555555555555555555555555555555555543222 33444444444333332
Q ss_pred CCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCC-cCchhHhhCCCCCcEEeccCCcccccc
Q 036932 167 TNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVG-DFPTWVLRNNTKLEALFLTNNSFTGNL 245 (790)
Q Consensus 167 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~-~ip~~~~~~l~~L~~L~L~~n~l~~~~ 245 (790)
. ++.+|.. .+++|++|++++|.+++ .+|..+ +++++|++|++++|.+++.
T Consensus 80 ~-------------------------l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~~- 130 (520)
T 2z7x_B 80 K-------------------------LVKISCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEKS- 130 (520)
T ss_dssp C-------------------------CCEEECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCGG-
T ss_pred c-------------------------eeecCcc--ccCCccEEeccCCccccccchhhh-ccCCcceEEEecCcccchh-
Confidence 2 2223333 45677888888888875 355544 4677777777777766542
Q ss_pred cCCCCCCCCC--CEEEeecCCC--CccCChhHHhhcccccEecccCCccccccchhhhccc-ccccccCcccccccccCh
Q 036932 246 QLPKTKHDFL--HHLDVSNNNL--TGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMK-ALIFLRLPKNNFSGELPA 320 (790)
Q Consensus 246 ~~~~~~~~~L--~~L~Ls~n~l--~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~Ls~n~l~~~i~~ 320 (790)
.+..+++| ++|++++|.+ .+..|.. +..+. +...+++++|.+.+.++.
T Consensus 131 --~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-------------------------l~~l~~~~l~l~l~~n~~~~~~~~ 183 (520)
T 2z7x_B 131 --SVLPIAHLNISKVLLVLGETYGEKEDPEG-------------------------LQDFNTESLHIVFPTNKEFHFILD 183 (520)
T ss_dssp --GGGGGTTSCEEEEEEEECTTTTSSCCTTT-------------------------TTTCCEEEEEEECCSSSCCCCCCC
T ss_pred --hccccccceeeEEEeeccccccccccccc-------------------------ccccccceEEEEeccCcchhhhhh
Confidence 23344444 5555555555 4344433 33222 122234444444444444
Q ss_pred hhhhcCCcCcEEEccCCc-------CcccccccccCCCCCcEEEcCCccccccccccc---CCCCCCcEEEcccccCcCC
Q 036932 321 PLLTGCISLGLLDLSGNN-------FYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGL---SNSNELNELDISNNLLSGH 390 (790)
Q Consensus 321 ~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~ 390 (790)
..+..+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+++..+..+ ...++|++|++++|+++|.
T Consensus 184 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 262 (520)
T 2z7x_B 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262 (520)
T ss_dssp CCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred hhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence 333444444444444443 222222 33344444444444443332111100 0012344444444444444
Q ss_pred CchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCccc-ccc-cc---cccceeeccCCcCccccch
Q 036932 391 IPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMT-SSF-NL---SSLEHLYLQMNSLSGPIPI 465 (790)
Q Consensus 391 ~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~-~l---~~L~~L~L~~n~l~~~~p~ 465 (790)
+|..+.... ...+++|+.+++++|.+ .+| ..+ .+ .+|+.|++++|.+.+..
T Consensus 263 ~p~~~~~~~--------------------~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-- 318 (520)
T 2z7x_B 263 LDFRDFDYS--------------------GTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML-- 318 (520)
T ss_dssp CCCCCCCCC--------------------SCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--
T ss_pred cccchhhcc--------------------cccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--
Confidence 443331000 03344444444444444 122 111 11 34566666666554221
Q ss_pred hhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccc--cCCccccCCCCCCEEEccCCcCcccCChhHHHHH
Q 036932 466 ALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEG--QIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIML 543 (790)
Q Consensus 466 ~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~ 543 (790)
....+++|++|++++|++++.+|.++..+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+|....
T Consensus 319 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~--- 395 (520)
T 2z7x_B 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--- 395 (520)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC---
T ss_pred chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh---
Confidence 11456667777777777776666667777777777777777765 4456677777777777777777755553210
Q ss_pred HhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCc
Q 036932 544 LWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQ 623 (790)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 623 (790)
..++.|+.|++++|+
T Consensus 396 -----------------------------------------------------------------~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 396 -----------------------------------------------------------------SWTKSLLSLNMSSNI 410 (520)
T ss_dssp -----------------------------------------------------------------CCCTTCCEEECCSSC
T ss_pred -----------------------------------------------------------------ccCccCCEEECcCCC
Confidence 124577788888888
Q ss_pred ccccCChhhhhceecceeccCCccccccCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCCeEecccCcceecCCC
Q 036932 624 LTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPR-LTELNFLSNFNVSFNNLSGLIPD 701 (790)
Q Consensus 624 l~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~-l~~l~~L~~L~ls~N~l~g~iP~ 701 (790)
+++.+|..+. -.|+.|+|++|+++ .+|..+..+++|+.|||++|+|++ +|.. +..+++|++|++++|+++|.+|.
T Consensus 411 l~~~~~~~l~-~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 411 LTDTIFRCLP-PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCGGGGGSCC-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCcchhhhhc-ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCc
Confidence 8777776654 23888999999998 888888899999999999999995 5554 89999999999999999998763
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-44 Score=409.87 Aligned_cols=455 Identities=20% Similarity=0.190 Sum_probs=255.4
Q ss_pred ceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCcc--ccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCC
Q 036932 16 WLFNNASNILFFIVVGFANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGI 93 (790)
Q Consensus 16 ~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n 93 (790)
.+++.+++++.++.. +. ++|++|++++|.++.+ ..|.++++|++|++++|.+++..+ ..+..+++|++|++++|
T Consensus 4 ~l~ls~n~l~~ip~~-~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKD-LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDI-SVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCSSCCCS-CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEG-GGGTTCTTCCEEECCSS
T ss_pred eEecCCCCccccccc-cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcCh-HHhhcccCCCEEecCCC
Confidence 344444444444422 11 4455555555544422 234445555555555555443221 23444455555555555
Q ss_pred cCcccCCcccCCCCCCcEEEccCCCCCC-CChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCccc
Q 036932 94 NIKGHLPDCLKNLSHLKVLDISYNQLSG-TLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSV 172 (790)
Q Consensus 94 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 172 (790)
.+.. +|.. .+++|++|++++|++++ .+|..|+++++|++|++++|.+++ ..+..+++|
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L-------------- 138 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHL-------------- 138 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTS--------------
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccc--------------
Confidence 4442 2222 44455555555555443 234444445555555555444432 123333333
Q ss_pred ccCCCCCCccceEEeCCCCCC---CCcchhhhCCC-CCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCc-------c
Q 036932 173 KTENFLPTFQLKVLGLPNYNL---KVIPSFLLHQY-DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNS-------F 241 (790)
Q Consensus 173 ~~~~~~~~~~L~~L~l~~n~l---~~lp~~l~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~-------l 241 (790)
+|+.|++++|.+ +..|..+..+. ....+++++|.+.+.++...+.++++|+.+++++|. +
T Consensus 139 ---------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 209 (520)
T 2z7x_B 139 ---------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209 (520)
T ss_dssp ---------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHH
T ss_pred ---------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccccccee
Confidence 013333333333 22333333332 233455566666555555445555666666666554 3
Q ss_pred cccccCCCCCCCCCCEEEeecCCCCccCChhHHh--hcccccEecccCCccccccchhh-----hcccccccccCccccc
Q 036932 242 TGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGI--ILQKLLYIDMSDNRFEGYLPSSI-----GEMKALIFLRLPKNNF 314 (790)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l-----~~l~~L~~L~Ls~n~l 314 (790)
.+..+ .+..+++|+.|++++|.+++..+..+.. ..++|++|++++|.++|.+|..+ +.+++|+.+++++|.+
T Consensus 210 ~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~ 288 (520)
T 2z7x_B 210 LSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF 288 (520)
T ss_dssp HHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC
T ss_pred ecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce
Confidence 33222 3344555566666555554332222211 12356666666666655555555 5555555555555555
Q ss_pred ccccChhhhhcC---CcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCC
Q 036932 315 SGELPAPLLTGC---ISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHI 391 (790)
Q Consensus 315 ~~~i~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 391 (790)
.+|...+..+ .+|+.|++++|.+.... .+..+++|++|++++|++++.+
T Consensus 289 --~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--------------------------~~~~l~~L~~L~Ls~n~l~~~~ 340 (520)
T 2z7x_B 289 --GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--------------------------CPSKISPFLHLDFSNNLLTDTV 340 (520)
T ss_dssp --CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--------------------------CCSSCCCCCEEECCSSCCCTTT
T ss_pred --ecchhhhhcccccCceeEEEcCCCcccccc--------------------------chhhCCcccEEEeECCccChhh
Confidence 3442221121 34555555555443221 1134455555555555555555
Q ss_pred chhhhhccCCCeEEEccCccccc--cchhhhccCCCCCEEecCCccccCcccc-cc-cccccceeeccCCcCccccchhh
Q 036932 392 PHWIGNFSSDLKVLLMSKMFLKG--NIPAQLLNHGSLNLLSVSENCLSGPMTS-SF-NLSSLEHLYLQMNSLSGPIPIAL 467 (790)
Q Consensus 392 p~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~-~l~~L~~L~L~~n~l~~~~p~~~ 467 (790)
|..++.++. |+.|++++|.+++ .+|..+..+++|++|++++|.+++.+|. .+ .+++|++|++++|++++.+|..+
T Consensus 341 ~~~~~~l~~-L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 341 FENCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp TTTCCCCSS-CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred hhhhccCCC-CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 555555555 5555555555554 4566777888899999999988884544 34 78899999999999988877766
Q ss_pred cCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh
Q 036932 468 FRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537 (790)
Q Consensus 468 ~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~ 537 (790)
. ++|+.|++++|+++ .+|.++..+++|++|++++|++++..+..+..+++|+.|++++|++++..+.
T Consensus 420 ~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 420 P--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp C--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred c--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 4 79999999999999 7888888999999999999999954444489999999999999999987663
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.5e-44 Score=422.03 Aligned_cols=355 Identities=19% Similarity=0.267 Sum_probs=263.3
Q ss_pred CCCCccCChhHHhhcccccEecccCCcccc-----------------ccchhhh--cccccccccCcccccccccChhhh
Q 036932 263 NNLTGKLPEDMGIILQKLLYIDMSDNRFEG-----------------YLPSSIG--EMKALIFLRLPKNNFSGELPAPLL 323 (790)
Q Consensus 263 n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~l~--~l~~L~~L~Ls~n~l~~~i~~~~~ 323 (790)
|+++| +|..+. .+++|++|++++|.+++ .+|..++ ++++|++|+|++|.+.+.+|.. +
T Consensus 435 N~L~~-IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l 511 (876)
T 4ecn_A 435 NRITF-ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-L 511 (876)
T ss_dssp CEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-G
T ss_pred Ccccc-hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-H
Confidence 56664 676654 47777777777777776 3677766 7777777777777777777754 4
Q ss_pred hcCCcCcEEEccCCc-Ccc-cccccccCC-------CCCcEEEcCCccccccccc--ccCCCCCCcEEEcccccCcCCCc
Q 036932 324 TGCISLGLLDLSGNN-FYG-QIFPKYMNL-------TQLEFLYLENNKFSGKIEE--GLSNSNELNELDISNNLLSGHIP 392 (790)
Q Consensus 324 ~~l~~L~~L~L~~n~-l~~-~~~~~~~~l-------~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~p 392 (790)
.++++|+.|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .+..+++|+.|++++|+++ .+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 577777777777776 766 566544433 47888888888887 6676 7777888888888888877 677
Q ss_pred hhhhhccCCCeEEEccCccccccchhhhccCCC-CCEEecCCccccCcccccc-cc--cccceeeccCCcCccccchh--
Q 036932 393 HWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGS-LNLLSVSENCLSGPMTSSF-NL--SSLEHLYLQMNSLSGPIPIA-- 466 (790)
Q Consensus 393 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~~-~l--~~L~~L~L~~n~l~~~~p~~-- 466 (790)
.+..++. |+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+ .+ ++|+.|++++|++++.+|..
T Consensus 590 -~~~~L~~-L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 590 -AFGTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp -CCCTTSE-ESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred -hhcCCCc-ceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence 6777776 888888888877 77777777877 888888888887 455554 33 34888888888887765532
Q ss_pred -hc--CCCCCcEEeccCCcccccCchh-hhcCccccEEeccCccccccCCccccCC--------CCCCEEEccCCcCccc
Q 036932 467 -LF--RSSNLITLDLRDNRFSGVIPHQ-ISESLTLRFLLLRGNYLEGQIPNQLCQL--------RRLGVLDLSHNRISGS 534 (790)
Q Consensus 467 -~~--~~~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~~~~l~~l--------~~L~~L~Ls~N~l~g~ 534 (790)
+. .+++|+.|++++|+++ .+|.. +..+++|+.|+|++|+++ .+|..+... ++|+.|+|++|+++ .
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~ 742 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-S 742 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-C
T ss_pred hhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-c
Confidence 22 3457888888888888 44544 457788888888888888 555544332 38888888888888 6
Q ss_pred CChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccc
Q 036932 535 IPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYM 614 (790)
Q Consensus 535 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 614 (790)
+|..+.. ..++.|
T Consensus 743 lp~~l~~-------------------------------------------------------------------~~l~~L 755 (876)
T 4ecn_A 743 LSDDFRA-------------------------------------------------------------------TTLPYL 755 (876)
T ss_dssp CCGGGST-------------------------------------------------------------------TTCTTC
T ss_pred chHHhhh-------------------------------------------------------------------ccCCCc
Confidence 7754320 125678
Q ss_pred eEEECCCCcccccCChhhhhce-ecceeccC------CccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCe
Q 036932 615 VGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSY------NFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSN 687 (790)
Q Consensus 615 ~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~------N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~ 687 (790)
+.|+|++|++++ +|..++.+. |+.|+|++ |++.+.+|..|+++++|+.|||++|+| +.+|..+. ++|+.
T Consensus 756 ~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~ 831 (876)
T 4ecn_A 756 SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYI 831 (876)
T ss_dssp CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCE
T ss_pred CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCE
Confidence 888888888886 788888777 88888866 889999999999999999999999999 78998876 69999
Q ss_pred EecccCcceecCC
Q 036932 688 FNVSFNNLSGLIP 700 (790)
Q Consensus 688 L~ls~N~l~g~iP 700 (790)
|||++|++...-+
T Consensus 832 LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 832 LDIADNPNISIDV 844 (876)
T ss_dssp EECCSCTTCEEEC
T ss_pred EECCCCCCCccCh
Confidence 9999999875443
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-44 Score=422.71 Aligned_cols=365 Identities=18% Similarity=0.230 Sum_probs=244.4
Q ss_pred ccEecccC--CccccccchhhhcccccccccCccccccc-----------------ccChhh-hhcCCcCcEEEccCCcC
Q 036932 280 LLYIDMSD--NRFEGYLPSSIGEMKALIFLRLPKNNFSG-----------------ELPAPL-LTGCISLGLLDLSGNNF 339 (790)
Q Consensus 280 L~~L~Ls~--n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~i~~~~-~~~l~~L~~L~L~~n~l 339 (790)
++.+.+.. |.+++ +|..++++++|++|+|++|+++| .+|..+ |.++++|++|+|++|.+
T Consensus 425 l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l 503 (876)
T 4ecn_A 425 LKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503 (876)
T ss_dssp CCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTT
T ss_pred hhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCC
Confidence 33444443 67776 67777777777777777777776 266654 34677777777777777
Q ss_pred cccccccccCCCCCcEEEcCCcc-ccc-ccccccCC-------CCCCcEEEcccccCcCCCch--hhhhccCCCeEEEcc
Q 036932 340 YGQIFPKYMNLTQLEFLYLENNK-FSG-KIEEGLSN-------SNELNELDISNNLLSGHIPH--WIGNFSSDLKVLLMS 408 (790)
Q Consensus 340 ~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~-------l~~L~~L~Ls~n~l~~~~p~--~~~~~~~~L~~L~l~ 408 (790)
.+.+|..+.++++|++|++++|+ +++ .+|..+.. +++|+.|++++|.++ .+|. .+..++. |+.|+++
T Consensus 504 ~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~-L~~L~Ls 581 (876)
T 4ecn_A 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK-LGLLDCV 581 (876)
T ss_dssp CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT-CCEEECT
T ss_pred CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC-CCEEECC
Confidence 77777777777777777777776 766 56654443 347777777777777 6776 7777776 7777777
Q ss_pred CccccccchhhhccCCCCCEEecCCccccCcccccc-cccc-cceeeccCCcCccccchhhcCCCC--CcEEeccCCccc
Q 036932 409 KMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSS-LEHLYLQMNSLSGPIPIALFRSSN--LITLDLRDNRFS 484 (790)
Q Consensus 409 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~-L~~L~L~~n~l~~~~p~~~~~~~~--L~~L~L~~N~l~ 484 (790)
+|.++ .+| .+..+++|+.|++++|.++ .+|..+ .+++ |+.|++++|+++ .+|..+..++. |+.|++++|+++
T Consensus 582 ~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~ 657 (876)
T 4ecn_A 582 HNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIG 657 (876)
T ss_dssp TSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCC
Confidence 77777 666 6777777777777777777 444444 6666 777777777777 66766655543 777777777777
Q ss_pred ccCchhh---h--cCccccEEeccCccccccCCcc-ccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccc
Q 036932 485 GVIPHQI---S--ESLTLRFLLLRGNYLEGQIPNQ-LCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQ 558 (790)
Q Consensus 485 ~~~p~~~---~--~l~~L~~L~L~~N~l~~~~~~~-l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~ 558 (790)
+.+|... . .+++|+.|++++|+++ .+|.. +..+++|+.|+|++|+++ .+|..+....
T Consensus 658 g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~--------------- 720 (876)
T 4ecn_A 658 SEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK--------------- 720 (876)
T ss_dssp TTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT---------------
T ss_pred CccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc---------------
Confidence 6555322 2 2346777777777777 44444 346777777777777777 6665432100
Q ss_pred cccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhh--hce
Q 036932 559 FFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIG--DLQ 636 (790)
Q Consensus 559 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~--~l~ 636 (790)
. .....++.|+.|+|++|+++ .+|..+. .+.
T Consensus 721 -------------------------------~---------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~ 753 (876)
T 4ecn_A 721 -------------------------------D---------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753 (876)
T ss_dssp -------------------------------T---------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT
T ss_pred -------------------------------c---------------ccccccCCccEEECCCCCCc-cchHHhhhccCC
Confidence 0 00012456777777777777 6777765 555
Q ss_pred -ecceeccCCccccccCccccCCCCCCEEEccC------CcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcC
Q 036932 637 -IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSH------NRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFD 709 (790)
Q Consensus 637 -L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~------N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~ 709 (790)
|+.|+|++|+|++ +|..++++++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.||.. .+..+.
T Consensus 754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~ 830 (876)
T 4ecn_A 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLY 830 (876)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSC
T ss_pred CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCC
Confidence 7777777777776 677777777777777765 667777777777777777777777777 677765 223444
Q ss_pred cccccCCcC
Q 036932 710 ESSYRGNLH 718 (790)
Q Consensus 710 ~~~~~gn~~ 718 (790)
.....+|+.
T Consensus 831 ~LdLs~N~l 839 (876)
T 4ecn_A 831 ILDIADNPN 839 (876)
T ss_dssp EEECCSCTT
T ss_pred EEECCCCCC
Confidence 444555543
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.1e-41 Score=396.99 Aligned_cols=510 Identities=19% Similarity=0.174 Sum_probs=400.1
Q ss_pred cCccceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCccc--cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEe
Q 036932 12 RSNKWLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFI 89 (790)
Q Consensus 12 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~ 89 (790)
.+++.|++++|+|+.+++.+|+++++|++|||++|+|+.++ +|.++++|++|+|++|++++.+ ...|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCCCCCEEE
Confidence 35789999999999999999999999999999999999443 6999999999999999998654 46799999999999
Q ss_pred cCCCcCcccCCcccCCCCCCcEEEccCCCCCCC-ChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCC----cEEEcc
Q 036932 90 LRGINIKGHLPDCLKNLSHLKVLDISYNQLSGT-LPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKL----EVLLLS 164 (790)
Q Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L----~~L~L~ 164 (790)
+++|++.+..+..|+++++|++|++++|++++. .|..++.+++|++|++++|.+++.. ...+..+.++ ..++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC-GGGGHHHHTCTTCCCEEECT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc-cccccchhhhhhhhhhhhcc
Confidence 999999988888899999999999999999764 5788999999999999999998543 3455554443 467888
Q ss_pred CCCCCcccccCCCCCCccceEEeCCCCCC--CCcchhhhCCCCCCEEEccCCCCCC-----cCchhHhhCCCCCcEEecc
Q 036932 165 SRTNMLSVKTENFLPTFQLKVLGLPNYNL--KVIPSFLLHQYDLKLLDLSGNNLVG-----DFPTWVLRNNTKLEALFLT 237 (790)
Q Consensus 165 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l--~~lp~~l~~l~~L~~L~Ls~n~l~~-----~ip~~~~~~l~~L~~L~L~ 237 (790)
.|... .++. .......++.+++.+|.. ...+..+..+..++...+..+.... ......+.....+....+.
T Consensus 210 ~n~l~-~i~~-~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~ 287 (635)
T 4g8a_A 210 LNPMN-FIQP-GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 287 (635)
T ss_dssp TCCCC-EECT-TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEE
T ss_pred cCccc-ccCc-ccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhh
Confidence 77643 2222 333445677888887765 2344566777777777665432221 1111222344455555554
Q ss_pred CCccccc---ccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCccccc
Q 036932 238 NNSFTGN---LQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNF 314 (790)
Q Consensus 238 ~n~l~~~---~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 314 (790)
.+..... ....+.....++.+++.++.+. .++.. .....++.|++.+|.+.+..+. .+..|+.+++..|..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~--~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 288 LAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVKDF--SYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKG 361 (635)
T ss_dssp EECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECGGG--GSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCS
T ss_pred hhhhcccccchhhhhhhhcccccccccccccc-ccccc--ccchhhhhhhcccccccCcCcc---cchhhhhcccccccC
Confidence 4332211 1123446678899999998887 44432 2367899999999988754443 456788888888887
Q ss_pred ccccChhhhhcCCcCcEEEccCCcCcc--cccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCc
Q 036932 315 SGELPAPLLTGCISLGLLDLSGNNFYG--QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIP 392 (790)
Q Consensus 315 ~~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 392 (790)
.. .+. ...+++|+.++++.|.+.. ..+..+..+.+|+.+++..+.+.. .+..+..+++|+.++++.+......+
T Consensus 362 ~~-~~~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~ 437 (635)
T 4g8a_A 362 GN-AFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 437 (635)
T ss_dssp CC-BCC--CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTS
T ss_pred CC-Ccc--cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccc
Confidence 63 332 2468899999999998864 344556678899999999998874 45667889999999999888776555
Q ss_pred h-hhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCcccc-Ccccccc-cccccceeeccCCcCccccchhhcC
Q 036932 393 H-WIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLS-GPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFR 469 (790)
Q Consensus 393 ~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~ 469 (790)
. .+..+.. ++.++++.|.+.+..+..+..++.++.|++++|.+. +..|..+ .+++|++|+|++|++++..|..|.+
T Consensus 438 ~~~~~~l~~-l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 516 (635)
T 4g8a_A 438 FSVFLSLRN-LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516 (635)
T ss_dssp SCTTTTCTT-CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ccccccccc-cccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC
Confidence 3 4556666 999999999999999999999999999999999754 4566667 8899999999999999888999999
Q ss_pred CCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCC-CCCCEEEccCCcCcccCC
Q 036932 470 SSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQL-RRLGVLDLSHNRISGSIP 536 (790)
Q Consensus 470 ~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l-~~L~~L~Ls~N~l~g~~p 536 (790)
+++|++|+|++|++++..|..+..+++|++|++++|++++..|..+..+ ++|+.|+|++|++++...
T Consensus 517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999988 689999999999987554
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.1e-42 Score=391.93 Aligned_cols=457 Identities=18% Similarity=0.186 Sum_probs=315.6
Q ss_pred CCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcc-hhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcE
Q 036932 155 HSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIP-SFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEA 233 (790)
Q Consensus 155 l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp-~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~ 233 (790)
+...++++++++.... ++.. +. +++++|++++|.+..++ ..+..+++|++|++++|.+++..|. .+.++++|++
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKD-LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTT-SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCcc-CCCC-CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCE
Confidence 3344677777665432 3321 11 56777777777775554 4666677777777777777633333 3346677777
Q ss_pred EeccCCcccccccCCCCCCCCCCEEEeecCCCCc-cCChhHHhhcccccEecccCCccccccchhhhccccc--ccccCc
Q 036932 234 LFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTG-KLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKAL--IFLRLP 310 (790)
Q Consensus 234 L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L--~~L~Ls 310 (790)
|++++|.++... ...+++|++|++++|++++ .+|..+ ..+++|++|++++|.+++. .+..+++| ++|+++
T Consensus 105 L~Ls~N~l~~lp---~~~l~~L~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 105 LDVSHNRLQNIS---CCPMASLRHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp EECTTSCCCEEC---SCCCTTCSEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred EECCCCcCCccC---ccccccCCEEECCCCCccccCchHhh-cccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 777777766432 2256677777777777763 223333 3467777777777776642 33444444 777777
Q ss_pred cccc--ccccChhhhhcCC-cCcEEEccCCcCcccccc-cccCCCCCcEEEcCCcc-----cccccccccCCCCCCcEEE
Q 036932 311 KNNF--SGELPAPLLTGCI-SLGLLDLSGNNFYGQIFP-KYMNLTQLEFLYLENNK-----FSGKIEEGLSNSNELNELD 381 (790)
Q Consensus 311 ~n~l--~~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~ 381 (790)
+|.+ .+..|..+ ..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|. +.+ ....+..++.|+.++
T Consensus 178 ~n~l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~ 255 (562)
T 3a79_B 178 LVSYHIKGGETESL-QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVT 255 (562)
T ss_dssp ESSCCCCSSSCCEE-EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEE
T ss_pred cccccccccCcccc-cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEE
Confidence 7766 54444332 2222 111446666666554433 34466777788887774 221 223456677777777
Q ss_pred cccccCcCCC----chhhhhccCCCeEEEccCccccccchhhh-----ccCCCCCEEecCCccccCcccc-cc----ccc
Q 036932 382 ISNNLLSGHI----PHWIGNFSSDLKVLLMSKMFLKGNIPAQL-----LNHGSLNLLSVSENCLSGPMTS-SF----NLS 447 (790)
Q Consensus 382 Ls~n~l~~~~----p~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~~-~~----~l~ 447 (790)
++++.+.+.. +..+. ... |++|++++|.++|.+|..+ ..++.|+.+++..+.+ .+|. .+ ...
T Consensus 256 L~~~~l~~~~~~~~~~~~~-~~~-L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~ 331 (562)
T 3a79_B 256 LQHIETTWKCSVKLFQFFW-PRP-VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEM 331 (562)
T ss_dssp EEEEEECHHHHHHHHHHHT-TSS-EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTC
T ss_pred ecCCcCcHHHHHHHHHhhh-ccc-ccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccC
Confidence 7777665421 22222 224 9999999999998888877 5666666666666666 2332 11 235
Q ss_pred ccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccc--cCCccccCCCCCCEEE
Q 036932 448 SLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEG--QIPNQLCQLRRLGVLD 525 (790)
Q Consensus 448 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~ 525 (790)
+|++|++++|.+.... ....+++|++|++++|++++.+|.++..+++|++|++++|++++ .+|..+..+++|+.|+
T Consensus 332 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 332 NIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred cceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 7999999999986322 12678999999999999999899999999999999999999997 3457789999999999
Q ss_pred ccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceec
Q 036932 526 LSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYEL 605 (790)
Q Consensus 526 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (790)
+++|++++.+|....
T Consensus 410 l~~N~l~~~~~~~~~----------------------------------------------------------------- 424 (562)
T 3a79_B 410 VSLNSLNSHAYDRTC----------------------------------------------------------------- 424 (562)
T ss_dssp CTTSCCBSCCSSCCC-----------------------------------------------------------------
T ss_pred CCCCcCCCccChhhh-----------------------------------------------------------------
Confidence 999999976774310
Q ss_pred ccCcccccceEEECCCCcccccCChhhhhceecceeccCCccccccCccccCCCCCCEEEccCCcccccCCcc-ccCCCC
Q 036932 606 YNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQIRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPR-LTELNF 684 (790)
Q Consensus 606 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~-l~~l~~ 684 (790)
..++.|+.|++++|++++.+|..+. -.|+.|+|++|+++ .+|..+.++++|+.|||++|+|++ +|.. +..+++
T Consensus 425 ---~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~ 498 (562)
T 3a79_B 425 ---AWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTS 498 (562)
T ss_dssp ---CCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTT
T ss_pred ---cCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCC
Confidence 2257899999999999998887765 23999999999999 788888899999999999999995 5555 999999
Q ss_pred CCeEecccCcceecCCCC
Q 036932 685 LSNFNVSFNNLSGLIPDK 702 (790)
Q Consensus 685 L~~L~ls~N~l~g~iP~~ 702 (790)
|++|++++|+++|.+|..
T Consensus 499 L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 499 LQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp CCCEECCSCCBCCCHHHH
T ss_pred CCEEEecCCCcCCCcchH
Confidence 999999999999988743
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-41 Score=387.15 Aligned_cols=464 Identities=20% Similarity=0.171 Sum_probs=299.7
Q ss_pred CCCCCCEEEcCCCCCCccc-cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEE
Q 036932 34 NLTNLKILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVL 112 (790)
Q Consensus 34 ~l~~L~~L~Ls~n~i~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (790)
.+...+++|+++|+++.++ .+. ++|++|++++|.+++.. ...+..+++|++|++++|.+.+..|.+|+++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELR-MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCC-GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccC-hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 3445588999999888444 344 88999999999988654 3578889999999999999988888889999999999
Q ss_pred EccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccc--eEEeCCC
Q 036932 113 DISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQL--KVLGLPN 190 (790)
Q Consensus 113 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L--~~L~l~~ 190 (790)
||++|+++ .+|.. .+++|++|++++|.+++.-.+..+.++++|++|++++|.... ..+..+.+| +.|++++
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----LDLLPVAHLHLSCILLDL 178 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----TTTGGGTTSCEEEEEEEE
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----CchhhhhhceeeEEEeec
Confidence 99999988 45554 789999999999998752223578888888888888876432 223333333 6666666
Q ss_pred CCC--C-CcchhhhCCC-CCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCC
Q 036932 191 YNL--K-VIPSFLLHQY-DLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLT 266 (790)
Q Consensus 191 n~l--~-~lp~~l~~l~-~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 266 (790)
|.+ . ..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|..... .+.
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------------~l~ 239 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------------------RLM 239 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-------------------HHH
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-------------------hHH
Confidence 555 2 2333333322 1113455555555444444444444555555554421000 001
Q ss_pred ccCChhHHhhcccccEecccCCcccccc----chhhhcccccccccCcccccccccChhhh----hcCCcCcEEEccCCc
Q 036932 267 GKLPEDMGIILQKLLYIDMSDNRFEGYL----PSSIGEMKALIFLRLPKNNFSGELPAPLL----TGCISLGLLDLSGNN 338 (790)
Q Consensus 267 ~~~p~~~~~~l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~----~~l~~L~~L~L~~n~ 338 (790)
+.+ .. +..+++|+.++++++.+.+.. +..+ ..++|++|++++|.+.|.+|..++ ..++.|+.+++..+.
T Consensus 240 ~~~-~~-l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~ 316 (562)
T 3a79_B 240 TFL-SE-LTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQV 316 (562)
T ss_dssp HHH-HH-HHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECC
T ss_pred HHH-HH-HhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccce
Confidence 000 11 112344444444444433211 1111 123555555555555555554432 233444444444444
Q ss_pred Cccccc-cccc---CCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccc
Q 036932 339 FYGQIF-PKYM---NLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG 414 (790)
Q Consensus 339 l~~~~~-~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~ 414 (790)
+ .+| ..+. ...+|++|++++|.+.... ....+++|++|++++|++++.+|..+..++. |+.|++++|++++
T Consensus 317 ~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~ 391 (562)
T 3a79_B 317 F--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR-LQTLILQRNGLKN 391 (562)
T ss_dssp C--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSS-CCEEECCSSCCCB
T ss_pred e--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCC-CCEEECCCCCcCC
Confidence 4 122 1111 1245666666666654221 1245666777777777777666666666666 7777777777765
Q ss_pred --cchhhhccCCCCCEEecCCccccCcccc-cc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchh
Q 036932 415 --NIPAQLLNHGSLNLLSVSENCLSGPMTS-SF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQ 490 (790)
Q Consensus 415 --~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~ 490 (790)
.+|..+..+++|++|++++|.+++.+|. .+ .+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|..
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~ 468 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKD 468 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTT
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChh
Confidence 3456788888999999999999984544 45 789999999999999887776654 79999999999998 67777
Q ss_pred hhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh
Q 036932 491 ISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537 (790)
Q Consensus 491 ~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~ 537 (790)
+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|.
T Consensus 469 ~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred hcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 77999999999999999954444489999999999999999987774
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.1e-41 Score=374.54 Aligned_cols=375 Identities=21% Similarity=0.225 Sum_probs=310.3
Q ss_pred CEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEcc
Q 036932 256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLS 335 (790)
Q Consensus 256 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~ 335 (790)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..++++++|++|++++|.+.+.++...+.++++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 35667777776 7776 2 36788888888888877788888888888888888888777777777788888888888
Q ss_pred CCcCcccccccccCCCCCcEEEcCCcccccccccc--cCCCCCCcEEEcccccCcCCCchh-hhhccCCCeEEEccCccc
Q 036932 336 GNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEG--LSNSNELNELDISNNLLSGHIPHW-IGNFSSDLKVLLMSKMFL 412 (790)
Q Consensus 336 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~p~~-~~~~~~~L~~L~l~~n~l 412 (790)
+|.+.+..|..+.++++|++|++++|.+++..+.. +..+++|++|++++|++++..|.. +..++. |++|++++|.+
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR-FHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT-CCEEECTTCCB
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc-ccEEeCCCCcc
Confidence 88888877888888888888888888887654444 788888888888888888777765 677776 88888888888
Q ss_pred cccchhhhccC--CCCCEEecCCccccCccccc---------ccccccceeeccCCcCccccchhhcCC---CCCcEEec
Q 036932 413 KGNIPAQLLNH--GSLNLLSVSENCLSGPMTSS---------FNLSSLEHLYLQMNSLSGPIPIALFRS---SNLITLDL 478 (790)
Q Consensus 413 ~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---------~~l~~L~~L~L~~n~l~~~~p~~~~~~---~~L~~L~L 478 (790)
++..+..+..+ .+|+.|++++|.+.+..+.. +.+++|++|++++|++++..|..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 88888777765 67888999999888765443 245789999999999998888777654 88999999
Q ss_pred cCCccccc----------Cchhhhc--CccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhh
Q 036932 479 RDNRFSGV----------IPHQISE--SLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWV 546 (790)
Q Consensus 479 ~~N~l~~~----------~p~~~~~--l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~ 546 (790)
++|.+.+. .+..+.. .++|+.|++++|.+++..|..+..+++|+.|++++|++++..|..+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------ 320 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW------ 320 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT------
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc------
Confidence 98865542 2222332 36899999999999999999999999999999999999976665442
Q ss_pred cccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccc
Q 036932 547 AGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTG 626 (790)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g 626 (790)
.++.|+.|+|++|++++
T Consensus 321 ---------------------------------------------------------------~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 321 ---------------------------------------------------------------GLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp ---------------------------------------------------------------TCTTCCEEECCSSCCCE
T ss_pred ---------------------------------------------------------------CcccCCEEECCCCccCC
Confidence 25689999999999998
Q ss_pred cCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcC
Q 036932 627 GIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQF 705 (790)
Q Consensus 627 ~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 705 (790)
..|..++.+. |+.|+|++|++++..|..|+++++|+.|||++|+|++..+..+..+++|++|++++|+++|.+|.-..+
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l 417 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 417 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHH
Confidence 8899999887 999999999999999999999999999999999999888888899999999999999999999965333
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.4e-41 Score=370.46 Aligned_cols=418 Identities=25% Similarity=0.317 Sum_probs=170.3
Q ss_pred CCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEE
Q 036932 83 KNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLL 162 (790)
Q Consensus 83 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~ 162 (790)
.+|++|++++|.+ +.+|++++++++|++|++++|++.+.+|..++++++|+.+++..|..
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------------- 70 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------------- 70 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------------
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------------
Confidence 4555555555555 45555555555555555555555555555555555444443332210
Q ss_pred ccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCccc
Q 036932 163 LSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFT 242 (790)
Q Consensus 163 L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~ 242 (790)
.++++|++++|.++.+|.. .++|++|++++|.+++ +|. ..++|++|++++|.++
T Consensus 71 ------------------~~l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~ 124 (454)
T 1jl5_A 71 ------------------RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLK 124 (454)
T ss_dssp ------------------HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCS
T ss_pred ------------------cCCCEEEecCCccccCCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccC
Confidence 2344555555555555542 2467777777777764 553 2356666666666665
Q ss_pred ccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhh
Q 036932 243 GNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPL 322 (790)
Q Consensus 243 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~ 322 (790)
+.... .++|++|++++|+++ .+|. +..+++|++|++++|++++ +|..+ .+|++|++++|+++ .+|
T Consensus 125 ~l~~~----~~~L~~L~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~-~l~--- 189 (454)
T 1jl5_A 125 ALSDL----PPLLEYLGVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLE-ELP--- 189 (454)
T ss_dssp CCCSC----CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCS-SCC---
T ss_pred cccCC----CCCCCEEECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCC-cCc---
Confidence 43211 134555555555555 2442 2234555555555555542 33221 24444444444444 233
Q ss_pred hhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCC
Q 036932 323 LTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDL 402 (790)
Q Consensus 323 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L 402 (790)
.+.++++|++|++++|.+++ +|.. .++|++|++++|.++ .+|. ++.++. |
T Consensus 190 -----------------------~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~-L 239 (454)
T 1jl5_A 190 -----------------------ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPF-L 239 (454)
T ss_dssp -----------------------CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTT-C
T ss_pred -----------------------cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCC-C
Confidence 34444444444444444442 2211 124444444444444 3332 333333 4
Q ss_pred eEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCc
Q 036932 403 KVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNR 482 (790)
Q Consensus 403 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~ 482 (790)
+.|++++|++++ +|.. .++|++|++++|.+++. |.. +++|++|++++|++++ +|.. .++|+.|++++|+
T Consensus 240 ~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l-~~~--~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~ 308 (454)
T 1jl5_A 240 TTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL-PEL--PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNE 308 (454)
T ss_dssp CEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC-CCC--CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSC
T ss_pred CEEECCCCcCCc-cccc---ccccCEEECCCCccccc-Ccc--cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCc
Confidence 444444444332 2211 23455555555555542 211 2456666666666654 2211 1456666666666
Q ss_pred ccccCchhhhcC-ccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccc
Q 036932 483 FSGVIPHQISES-LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFS 561 (790)
Q Consensus 483 l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (790)
+++. + .+ ++|++|++++|++++ +|.. +++|+.|++++|+++ .+|.
T Consensus 309 l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~------------------------ 354 (454)
T 1jl5_A 309 IRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE------------------------ 354 (454)
T ss_dssp CSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC------------------------
T ss_pred CCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc------------------------
Confidence 6542 1 12 356666666666664 3432 456666666666665 3442
Q ss_pred ccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccc--cCChhhhhceecc
Q 036932 562 AIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTG--GIPSEIGDLQIRG 639 (790)
Q Consensus 562 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g--~ip~~~~~l~L~~ 639 (790)
.++.|+.||+++|++++ .+|..++.
T Consensus 355 ------------------------------------------------~l~~L~~L~L~~N~l~~l~~ip~~l~~----- 381 (454)
T 1jl5_A 355 ------------------------------------------------LPQNLKQLHVEYNPLREFPDIPESVED----- 381 (454)
T ss_dssp ------------------------------------------------CCTTCCEEECCSSCCSSCCCCCTTCCE-----
T ss_pred ------------------------------------------------hhhhccEEECCCCCCCcCCCChHHHHh-----
Confidence 02356666666666666 55555433
Q ss_pred eeccCCccccccCccccCCCCCCEEEccCCcccc--cCCccccCCCCCCeEecccCcceecCC
Q 036932 640 LNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSG--QVPPRLTELNFLSNFNVSFNNLSGLIP 700 (790)
Q Consensus 640 L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg--~ip~~l~~l~~L~~L~ls~N~l~g~iP 700 (790)
|+.|++.|.+|.. +++|+.||+++|+++| .+|.+ ++.|.+++|.+.+.+|
T Consensus 382 --L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~ 433 (454)
T 1jl5_A 382 --LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYE 433 (454)
T ss_dssp --EECCC--------------------------------------------------------
T ss_pred --hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccc
Confidence 3445666666653 4566777777777766 56644 3444556666665554
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.7e-39 Score=356.50 Aligned_cols=364 Identities=21% Similarity=0.222 Sum_probs=244.0
Q ss_pred CcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCc
Q 036932 231 LEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLP 310 (790)
Q Consensus 231 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 310 (790)
|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+++..|..++++++|++|+++
T Consensus 32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 111 (455)
T 3v47_A 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLT 111 (455)
T ss_dssp CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECT
T ss_pred cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCC
Confidence 33444444433333333344445555555555555445544444456666666666666666666666666666666666
Q ss_pred ccccccccCh-hhhhcCCcCcEEEccCCcCccccccc-ccCCCCCcEEEcCCcccccccccccCCC--CCCcEEEccccc
Q 036932 311 KNNFSGELPA-PLLTGCISLGLLDLSGNNFYGQIFPK-YMNLTQLEFLYLENNKFSGKIEEGLSNS--NELNELDISNNL 386 (790)
Q Consensus 311 ~n~l~~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~ 386 (790)
+|.+++.++. ..+..+++|++|++++|.+.+..|.. +.++++|++|++++|.+++..+..+..+ .+|+.|++++|.
T Consensus 112 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~ 191 (455)
T 3v47_A 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT 191 (455)
T ss_dssp TSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCB
T ss_pred CCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCc
Confidence 6666643332 22455666666666666666655554 5666667777777776666666555544 566677777777
Q ss_pred CcCCCchhhh--------hccCCCeEEEccCccccccchhhhccC---CCCCEEecCCccccCcccccccccccceeecc
Q 036932 387 LSGHIPHWIG--------NFSSDLKVLLMSKMFLKGNIPAQLLNH---GSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQ 455 (790)
Q Consensus 387 l~~~~p~~~~--------~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~ 455 (790)
+.+..+.++. ..+. |+.|++++|.+++..|..+... ++|+.|++++|...+....
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------- 257 (455)
T 3v47_A 192 LQDMNEYWLGWEKCGNPFKNTS-ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------- 257 (455)
T ss_dssp CTTCSTTCTTHHHHCCTTTTCE-EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-------------
T ss_pred ccccchhhccccccccccccce-eeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-------------
Confidence 6644333221 2233 6666666666666666555443 5666777766655443211
Q ss_pred CCcCccccchhhc--CCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcc
Q 036932 456 MNSLSGPIPIALF--RSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISG 533 (790)
Q Consensus 456 ~n~l~~~~p~~~~--~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g 533 (790)
.+.+.+..+..+. ..++|+.|++++|++++..|.++..+++|++|++++|++++..|..+..+++|+.|++++|++++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 1122212222222 23688999999999998888889999999999999999998888889999999999999999875
Q ss_pred cCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCccccc
Q 036932 534 SIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKY 613 (790)
Q Consensus 534 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 613 (790)
..|..+. .++.
T Consensus 338 ~~~~~~~---------------------------------------------------------------------~l~~ 348 (455)
T 3v47_A 338 IDSRMFE---------------------------------------------------------------------NLDK 348 (455)
T ss_dssp ECGGGGT---------------------------------------------------------------------TCTT
T ss_pred cChhHhc---------------------------------------------------------------------Cccc
Confidence 5554432 2568
Q ss_pred ceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCc
Q 036932 614 MVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPP 677 (790)
Q Consensus 614 L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~ 677 (790)
|+.|||++|++++..|..++.+. |+.|+|++|++++..+..++.+++|+.||+++|.+++.+|.
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999999988898898887 99999999999987778889999999999999999998873
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.7e-40 Score=361.83 Aligned_cols=389 Identities=25% Similarity=0.273 Sum_probs=214.4
Q ss_pred CccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCC-------------CcEEeccCCccccccc
Q 036932 180 TFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTK-------------LEALFLTNNSFTGNLQ 246 (790)
Q Consensus 180 ~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~-------------L~~L~L~~n~l~~~~~ 246 (790)
...|++|++++|.++.+|..++++++|++|++++|.++|.+|..+. ++++ +++|++++|.+++...
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNG-EQREMAVSRLRDCLDRQAHELELNNLGLSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSC-CCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccc-cchhcchhhhhhhhccCCCEEEecCCccccCCC
Confidence 4577888888888888999899999999999999998888887653 4444 4777888877776432
Q ss_pred CCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcC
Q 036932 247 LPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGC 326 (790)
Q Consensus 247 ~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l 326 (790)
..++|++|++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|+++ .+|. +..+
T Consensus 89 ----~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~l 152 (454)
T 1jl5_A 89 ----LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQNS 152 (454)
T ss_dssp ----CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTTC
T ss_pred ----CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCCC
Confidence 23677788888887774 6642 3677788888877774 2321 157777777777777 4663 5677
Q ss_pred CcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEE
Q 036932 327 ISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLL 406 (790)
Q Consensus 327 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~ 406 (790)
++|++|++++|.+++ +|.. .++|++|++++|++++ +| .++.+++|++|++++|++++ +|... ..|+.|+
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L~ 221 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP----LSLESIV 221 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC----TTCCEEE
T ss_pred CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc----CcccEEE
Confidence 777777777777765 3332 2477777777777775 44 46777777777777777774 44322 1377777
Q ss_pred ccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCccccc
Q 036932 407 MSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGV 486 (790)
Q Consensus 407 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~ 486 (790)
+++|.++ .+| .+..+++|++|++++|.+++... .+++|++|++++|++++ +|.. .++|+.|++++|++++.
T Consensus 222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred CcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence 7777776 455 36667777777777777765322 13567777777777764 4432 25677777777776652
Q ss_pred CchhhhcCccccEEeccCccccccCCccccCC-CCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccc
Q 036932 487 IPHQISESLTLRFLLLRGNYLEGQIPNQLCQL-RRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFV 565 (790)
Q Consensus 487 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l-~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (790)
|.. .++|+.|++++|++++. + .+ ++|+.|++++|++++ +|..
T Consensus 293 -~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~--------------------------- 335 (454)
T 1jl5_A 293 -SEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL--------------------------- 335 (454)
T ss_dssp -SCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---------------------------
T ss_pred -cCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---------------------------
Confidence 111 14667777777766642 1 22 466777777776663 4421
Q ss_pred ccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccC
Q 036932 566 GSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSY 644 (790)
Q Consensus 566 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~ 644 (790)
++.|+.|++++|+++ .+|. .+. |+.|++++
T Consensus 336 ---------------------------------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~ 366 (454)
T 1jl5_A 336 ---------------------------------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEY 366 (454)
T ss_dssp ---------------------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred ---------------------------------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCC
Confidence 235666777777766 4555 233 66677777
Q ss_pred Ccccc--ccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCccee--cCCCC
Q 036932 645 NFLSG--SIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSG--LIPDK 702 (790)
Q Consensus 645 N~l~g--~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g--~iP~~ 702 (790)
|++++ .+|.++++ |+.|.+.|.+|.. +++|++||+++|+++| .||.+
T Consensus 367 N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 367 NPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp SCCSSCCCCCTTCCE--------EECCC----------------------------------
T ss_pred CCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence 77766 56655442 3346666666653 3789999999999998 88864
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.9e-36 Score=333.53 Aligned_cols=323 Identities=22% Similarity=0.226 Sum_probs=228.4
Q ss_pred eeeeChhhhcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCccc
Q 036932 24 ILFFIVVGFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCL 103 (790)
Q Consensus 24 ~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 103 (790)
.....+..++++++|++|++++|.++.++++..+++|++|++++|.+++. .+..+++|++|++++|.+.+. + +
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCC-C--C
T ss_pred cCcccccChhHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCcee-e--c
Confidence 33334457888999999999999999767899999999999999999875 288999999999999999975 3 8
Q ss_pred CCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccc
Q 036932 104 KNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQL 183 (790)
Q Consensus 104 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L 183 (790)
+++++|++|++++|++++. | ++.+++|++|++++|.+++ ++ +.++++|++|++++|.....+ .+..+++|
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L 172 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL---DVTPQTQL 172 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTC
T ss_pred CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc---ccccCCcC
Confidence 9999999999999999974 4 8999999999999999986 33 778999999999988655544 35667778
Q ss_pred eEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecC
Q 036932 184 KVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNN 263 (790)
Q Consensus 184 ~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 263 (790)
+.|++++|+++.+| +..+++|+.|++++|.+++ ++ +..+++|++|++++|.+++. ++..+++|+.|++++|
T Consensus 173 ~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~i---p~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 173 TTLDCSFNKITELD--VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVN 243 (457)
T ss_dssp CEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSS
T ss_pred CEEECCCCccceec--cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCccccc---CccccCCCCEEEeeCC
Confidence 88888888887776 6677778888888877774 33 34677777777777777763 3666777777777777
Q ss_pred CCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccc
Q 036932 264 NLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQI 343 (790)
Q Consensus 264 ~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 343 (790)
++++ +|. ..+++|+.|+++.| +|+.|++++|.+.|.+|. ..+++|+.|++++|...+.+
T Consensus 244 ~l~~-~~~---~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 244 PLTE-LDV---STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CCSC-CCC---TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEE
T ss_pred cCCC-cCH---HHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc---cccccCCEEECCCCccccee
Confidence 7773 342 23566666666554 345666777766666652 35666666666666655554
Q ss_pred cccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCcccc
Q 036932 344 FPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLK 413 (790)
Q Consensus 344 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~ 413 (790)
|. ..++|+.|++++| ++|++|++++|++++. + +..++. |+.|++++|+++
T Consensus 303 ~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~-L~~L~l~~N~l~ 352 (457)
T 3bz5_A 303 DC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTK-LKSLSCVNAHIQ 352 (457)
T ss_dssp EC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTT-CSEEECCSSCCC
T ss_pred cc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCc-CcEEECCCCCCC
Confidence 43 2233444333322 4455555555555542 1 333333 444444444443
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=341.73 Aligned_cols=343 Identities=20% Similarity=0.181 Sum_probs=270.8
Q ss_pred cccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccc
Q 036932 306 FLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNN 385 (790)
Q Consensus 306 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 385 (790)
.++.+++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4555555555 555533 246677777777777666667777777777777777777666777777777777777777
Q ss_pred cCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccc
Q 036932 386 LLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIP 464 (790)
Q Consensus 386 ~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p 464 (790)
++++..+..+..++. |+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..+
T Consensus 91 ~l~~~~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLKLIPLGVFTGLSN-LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCCSCCTTSSTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCCccCcccccCCCC-CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 777544455666666 7777777777777777778888888888888888888777777 78899999999999987667
Q ss_pred hhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh-hHHHHH
Q 036932 465 IALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS-CLTIML 543 (790)
Q Consensus 465 ~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~-~~~~~~ 543 (790)
..+..+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+.+|.......+|+.|++++|+++ .+|. .+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~---- 244 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAV---- 244 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHH----
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHh----
Confidence 77889999999999999999888888899999999999999888888877777789999999999998 4553 22
Q ss_pred HhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCc
Q 036932 544 LWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQ 623 (790)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 623 (790)
..++.|+.|+|++|+
T Consensus 245 -----------------------------------------------------------------~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 245 -----------------------------------------------------------------RHLVYLRFLNLSYNP 259 (477)
T ss_dssp -----------------------------------------------------------------TTCTTCCEEECCSSC
T ss_pred -----------------------------------------------------------------cCccccCeeECCCCc
Confidence 225689999999999
Q ss_pred ccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCC
Q 036932 624 LTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK 702 (790)
Q Consensus 624 l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 702 (790)
+++..+..+..+. |+.|+|++|++++..|..|+++++|+.|||++|+|++..+..|..+++|++|++++|++.|.++..
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL 339 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH
T ss_pred CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH
Confidence 9987777888887 999999999999999999999999999999999999988888999999999999999999887643
Q ss_pred CcCCCcCcccccCCcCCCCCC
Q 036932 703 GQFATFDESSYRGNLHLCGPT 723 (790)
Q Consensus 703 ~~~~~~~~~~~~gn~~lcg~~ 723 (790)
..+.......+.++...|..|
T Consensus 340 ~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 340 WVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp HHHTTTTSSCCTTCCCBEEES
T ss_pred hHHhhhhccccCccCceeCCc
Confidence 222232334456676677554
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-36 Score=334.53 Aligned_cols=359 Identities=20% Similarity=0.180 Sum_probs=227.3
Q ss_pred ccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCC
Q 036932 78 GVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSK 157 (790)
Q Consensus 78 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~ 157 (790)
.+.++++|++|++++|.+.+. | .++.+++|++|++++|++++. | ++.+++|++|++++|.+++. + +.++++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D---VTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C---CTTCTT
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e---cCCCCc
Confidence 456677777777777777754 3 577777777777777777754 3 67777777777777777642 2 555666
Q ss_pred CcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEecc
Q 036932 158 LEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLT 237 (790)
Q Consensus 158 L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~ 237 (790)
|++|++++|. ++.+| +..+++|++|++++|.+++ ++ +..+++|++|+++
T Consensus 108 L~~L~L~~N~-------------------------l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~ 156 (457)
T 3bz5_A 108 LTYLNCDTNK-------------------------LTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCH 156 (457)
T ss_dssp CCEEECCSSC-------------------------CSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECT
T ss_pred CCEEECCCCc-------------------------CCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECC
Confidence 6666665554 33333 4445555555555555553 32 2345556666665
Q ss_pred CCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccc
Q 036932 238 NNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGE 317 (790)
Q Consensus 238 ~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 317 (790)
+|...+.. ++..+++|++|++++|+++ .+| +..+++|++|++++|.+++. .++.+++|++|++++|++++
T Consensus 157 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 157 LNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp TCSCCCCC--CCTTCTTCCEEECCSSCCC-CCC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred CCCccccc--ccccCCcCCEEECCCCccc-eec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence 55433321 3445556666666666665 344 22356666666666666543 25556666666666666663
Q ss_pred cChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhh
Q 036932 318 LPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGN 397 (790)
Q Consensus 318 i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 397 (790)
+| +..+++|+.|++++|.+++.. ...+++|+.|+++.| +|+.|++++|.+.+.+| ++.
T Consensus 227 ip---~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~ 284 (457)
T 3bz5_A 227 ID---VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEG 284 (457)
T ss_dssp CC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTT
T ss_pred cC---ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccc
Confidence 54 345666666666666666543 234556666665543 34455666666555555 234
Q ss_pred ccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEe
Q 036932 398 FSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLD 477 (790)
Q Consensus 398 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~ 477 (790)
++. |+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|++++. + +..+++|+.|+
T Consensus 285 l~~-L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~ 345 (457)
T 3bz5_A 285 CRK-IKELDVTHNTQLYLLDC---QAAGITELDLSQN------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLS 345 (457)
T ss_dssp CTT-CCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEE
T ss_pred ccc-CCEEECCCCcccceecc---CCCcceEechhhc------------ccCCEEECCCCccccc-c--cccCCcCcEEE
Confidence 444 66666666666666653 3345666666554 5788999999999873 3 88889999999
Q ss_pred ccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHH
Q 036932 478 LRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLT 540 (790)
Q Consensus 478 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~ 540 (790)
+++|++++ ++.|+.|++++|.+.|. ..+..|+.+++++|+++|.+|..+.
T Consensus 346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 99999986 25677788999999876 3456778889999999999997643
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.1e-35 Score=327.09 Aligned_cols=322 Identities=26% Similarity=0.324 Sum_probs=213.3
Q ss_pred cccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEE
Q 036932 277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFL 356 (790)
Q Consensus 277 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 356 (790)
+++|++|++++|.+++..+ +..+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 139 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence 4444444444444443222 444445555555555444 2222 3445555555555555544322 4455555555
Q ss_pred EcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932 357 YLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL 436 (790)
Q Consensus 357 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 436 (790)
++++|.+++. + .+..+++|+.|+++ |.+.+. + .+..++. |+.|++++|.+++. ..+..+++|++|++++|.+
T Consensus 140 ~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~-L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 140 ELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-K-PLANLTT-LERLDISSNKVSDI--SVLAKLTNLESLIATNNQI 211 (466)
T ss_dssp EEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-G-GGTTCTT-CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred ECCCCccCCC-h-hhccCCcccEeecC-CcccCc-h-hhccCCC-CCEEECcCCcCCCC--hhhccCCCCCEEEecCCcc
Confidence 5555555432 2 24455555555554 233321 1 1444444 55555555555432 2356677788888888877
Q ss_pred cCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCcccc
Q 036932 437 SGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLC 516 (790)
Q Consensus 437 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 516 (790)
++..+ ...+++|++|++++|++++. ..+..+++|+.|++++|++++..+ +..+++|+.|++++|.+++..+ +.
T Consensus 212 ~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~ 284 (466)
T 1o6v_A 212 SDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284 (466)
T ss_dssp CCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred ccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--cc
Confidence 77655 22677888888888888743 357778888888888888886544 7788888888888888886544 77
Q ss_pred CCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEE
Q 036932 517 QLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVE 596 (790)
Q Consensus 517 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (790)
.+++|+.|++++|++++..| +
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~--~--------------------------------------------------------- 305 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP--I--------------------------------------------------------- 305 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG--G---------------------------------------------------------
T ss_pred CCCccCeEEcCCCcccCchh--h---------------------------------------------------------
Confidence 88889999999998874322 1
Q ss_pred EeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccC
Q 036932 597 FMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV 675 (790)
Q Consensus 597 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~i 675 (790)
..++.|+.|++++|++++..| ++.+. |+.|++++|++++. ..++++++|+.|++++|++++.+
T Consensus 306 ------------~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 306 ------------SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp ------------GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCG
T ss_pred ------------cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccc
Confidence 125678899999999887665 56666 99999999999875 47889999999999999999888
Q ss_pred CccccCCCCCCeEecccCccee
Q 036932 676 PPRLTELNFLSNFNVSFNNLSG 697 (790)
Q Consensus 676 p~~l~~l~~L~~L~ls~N~l~g 697 (790)
| +..+++|+.|++++|++++
T Consensus 370 ~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 370 P--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp G--GTTCTTCCEEECCCEEEEC
T ss_pred h--hhcCCCCCEEeccCCcccC
Confidence 8 8899999999999999997
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.2e-34 Score=321.17 Aligned_cols=348 Identities=22% Similarity=0.323 Sum_probs=231.1
Q ss_pred cCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEE
Q 036932 33 ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVL 112 (790)
Q Consensus 33 ~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (790)
..++++++|+++++.+..++.+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ ++++++|++|
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh---hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 3467899999999999988889999999999999999987643 8899999999999999986654 9999999999
Q ss_pred EccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCC
Q 036932 113 DISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYN 192 (790)
Q Consensus 113 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 192 (790)
++++|++++..+ +.++++|++|++++|.+++ ++ .+.++++|+.|+++.+ .. .. ..+..+++|++|++++|.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~~-~~-~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS--ALSGLTSLQQLSFGNQ-VT-DL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG--GGTTCTTCSEEEEEES-CC-CC--GGGTTCTTCCEEECCSSC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch--hhccCCcccEeecCCc-cc-Cc--hhhccCCCCCEEECcCCc
Confidence 999999986643 8999999999999999885 33 4888999999988632 11 11 124445555555555555
Q ss_pred CCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChh
Q 036932 193 LKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPED 272 (790)
Q Consensus 193 l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 272 (790)
+..++. +..+++|++|++++|.++ +.. ++..+++|++|++++|.+. .++ .
T Consensus 189 l~~~~~-l~~l~~L~~L~l~~n~l~-------------------------~~~--~~~~l~~L~~L~l~~n~l~-~~~-~ 238 (466)
T 1o6v_A 189 VSDISV-LAKLTNLESLIATNNQIS-------------------------DIT--PLGILTNLDELSLNGNQLK-DIG-T 238 (466)
T ss_dssp CCCCGG-GGGCTTCSEEECCSSCCC-------------------------CCG--GGGGCTTCCEEECCSSCCC-CCG-G
T ss_pred CCCChh-hccCCCCCEEEecCCccc-------------------------ccc--cccccCCCCEEECCCCCcc-cch-h
Confidence 544432 444455555555555544 332 1334444555555555554 222 1
Q ss_pred HHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCC
Q 036932 273 MGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQ 352 (790)
Q Consensus 273 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 352 (790)
+ ..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++
T Consensus 239 l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 310 (466)
T 1o6v_A 239 L-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKN 310 (466)
T ss_dssp G-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred h-hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCC
Confidence 1 235566666666666554333 555666666666666665 2332 3456666666666666655433 556666
Q ss_pred CcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecC
Q 036932 353 LEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVS 432 (790)
Q Consensus 353 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 432 (790)
|++|++++|++++..| +..+++|+.|++++|++++. ..+..++. |+.|++++|.+++..| +..+++|+.|+++
T Consensus 311 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 311 LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN-INWLSAGHNQISDLTP--LANLTRITQLGLN 383 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT-CCEEECCSSCCCBCGG--GTTCTTCCEEECC
T ss_pred CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC-CCEEeCCCCccCccch--hhcCCCCCEEecc
Confidence 6666666666665444 45666666777766666643 34555655 7777777777766655 6667777777777
Q ss_pred CccccCc
Q 036932 433 ENCLSGP 439 (790)
Q Consensus 433 ~n~l~~~ 439 (790)
+|.+++.
T Consensus 384 ~n~~~~~ 390 (466)
T 1o6v_A 384 DQAWTNA 390 (466)
T ss_dssp CEEEECC
T ss_pred CCcccCC
Confidence 7777764
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.8e-35 Score=311.24 Aligned_cols=255 Identities=35% Similarity=0.551 Sum_probs=221.3
Q ss_pred CeEEEccCccccc--cchhhhccCCCCCEEecCC-ccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEe
Q 036932 402 LKVLLMSKMFLKG--NIPAQLLNHGSLNLLSVSE-NCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLD 477 (790)
Q Consensus 402 L~~L~l~~n~l~~--~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~ 477 (790)
++.|++++|.+++ .+|..+..+++|++|++++ |.+.+.+|..+ ++++|++|++++|++++.+|..+..+++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 5555566666655 5666666777777777774 77777777766 788888888888888888888888899999999
Q ss_pred ccCCcccccCchhhhcCccccEEeccCccccccCCccccCCC-CCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcc
Q 036932 478 LRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLR-RLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPY 556 (790)
Q Consensus 478 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~ 556 (790)
+++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~--------------- 196 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--------------- 196 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG---------------
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC---------------
Confidence 999999988899999999999999999999989999999988 8999999999999888876532
Q ss_pred cccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce
Q 036932 557 LQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ 636 (790)
Q Consensus 557 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~ 636 (790)
++ |+.|++++|++++.+|..++.+.
T Consensus 197 ------------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~ 221 (313)
T 1ogq_A 197 ------------------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDK 221 (313)
T ss_dssp ------------------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTS
T ss_pred ------------------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCC
Confidence 23 88999999999999999998887
Q ss_pred -ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccC
Q 036932 637 -IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRG 715 (790)
Q Consensus 637 -L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g 715 (790)
|+.|+|++|++++.+|. ++.+++|+.|||++|+|+|.+|..+..+++|++|++++|+++|.+|..+++..+....+.|
T Consensus 222 ~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300 (313)
T ss_dssp CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCS
T ss_pred CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcC
Confidence 99999999999988877 8899999999999999999999999999999999999999999999998899999999999
Q ss_pred CcCCCCCCCCCCC
Q 036932 716 NLHLCGPTINKSC 728 (790)
Q Consensus 716 n~~lcg~~~~~~c 728 (790)
|+.+||.|+. .|
T Consensus 301 N~~lc~~p~~-~C 312 (313)
T 1ogq_A 301 NKCLCGSPLP-AC 312 (313)
T ss_dssp SSEEESTTSS-CC
T ss_pred CCCccCCCCC-CC
Confidence 9999998876 46
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.3e-34 Score=320.36 Aligned_cols=294 Identities=21% Similarity=0.213 Sum_probs=153.2
Q ss_pred EEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCccc
Q 036932 233 ALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKN 312 (790)
Q Consensus 233 ~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n 312 (790)
.++.+++.++.. |....+.+++|++++|+++ .++...+..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~~i---p~~~~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFVAV---PEGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCSSC---CSCCCTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCcC---CCCCCCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 445555544432 2233345566666666665 232222334566666666666666555555666666666666666
Q ss_pred ccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCc
Q 036932 313 NFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIP 392 (790)
Q Consensus 313 ~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p 392 (790)
+++ .+|...+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+
T Consensus 91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 655 5555445555566666666666555555555555566666666665555555555555555555555555554444
Q ss_pred hhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCC
Q 036932 393 HWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSS 471 (790)
Q Consensus 393 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~ 471 (790)
..+..++. |+.|++++|.+.+..+..+..+++|+.|++++|.+.+.++... ...+|++|++++|++++..+..+..++
T Consensus 170 ~~l~~l~~-L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 170 EALSHLHG-LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHTTCTT-CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hHhcccCC-CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 44444444 5555555555554444445555555555555544444333332 333455555555555432223444455
Q ss_pred CCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCc
Q 036932 472 NLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 472 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 532 (790)
+|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 5555555555555444444444555555555555555444444555555555555555544
No 36
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.6e-34 Score=327.64 Aligned_cols=334 Identities=21% Similarity=0.167 Sum_probs=191.6
Q ss_pred cccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEE
Q 036932 277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFL 356 (790)
Q Consensus 277 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 356 (790)
+.+++.+++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|+|++|.+.+..+..|.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456666666666666444444556666666666666665 3443344556666666666666665555555666666666
Q ss_pred EcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932 357 YLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL 436 (790)
Q Consensus 357 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 436 (790)
++++|.+++..+..|..+++|++|++++|.+++..|..+..++. |+.|++++|.+++.. +..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT-CCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCc-CcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 66666665444444555666666666666665555555555554 555555555554321 23344455555555544
Q ss_pred cCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCcccc
Q 036932 437 SGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLC 516 (790)
Q Consensus 437 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 516 (790)
++. ...++|+.|++++|.++...+. + .++|+.|++++|.+++ +..+.
T Consensus 205 ~~l----------------------------~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~ 251 (597)
T 3oja_B 205 STL----------------------------AIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLL 251 (597)
T ss_dssp SEE----------------------------ECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGG
T ss_pred ccc----------------------------cCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--Chhhc
Confidence 432 1223444455555444422111 1 1345555555555543 23444
Q ss_pred CCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEE
Q 036932 517 QLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVE 596 (790)
Q Consensus 517 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (790)
.+++|+.|+|++|.+++..|..++
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~-------------------------------------------------------- 275 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFV-------------------------------------------------------- 275 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGT--------------------------------------------------------
T ss_pred cCCCCCEEECCCCccCCCCHHHhc--------------------------------------------------------
Confidence 555555555555555544443321
Q ss_pred EeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccC
Q 036932 597 FMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV 675 (790)
Q Consensus 597 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~i 675 (790)
.++.|+.|+|++|.+++ +|..++.+. |+.|+|++|.++ .+|..++.+++|+.|||++|+|++..
T Consensus 276 -------------~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 276 -------------KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp -------------TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred -------------CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence 13345555555555553 344444444 677777777777 56777778888888888888887653
Q ss_pred CccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCcCCCCCC
Q 036932 676 PPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPT 723 (790)
Q Consensus 676 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~ 723 (790)
+..++.|++|++++|+++|.++. ..+..+....+.+++..|+.+
T Consensus 341 ---~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 341 ---LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp ---CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred ---hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 56678889999999999887543 345566666788888888764
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.1e-34 Score=309.29 Aligned_cols=333 Identities=21% Similarity=0.177 Sum_probs=192.6
Q ss_pred cccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEE
Q 036932 277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFL 356 (790)
Q Consensus 277 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 356 (790)
++++++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 566777777777766444444566677777777777666 4554445566666667776666666666666666666666
Q ss_pred EcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932 357 YLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL 436 (790)
Q Consensus 357 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 436 (790)
++++|.++...+..+..+++|++|++++|++++..|..+..++. |+.|++++|.+++. .+..+++|+.|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT-CCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC-CCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 66666666444444566666666666666666555555555555 66666666655543 133445555555555554
Q ss_pred cCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCcccc
Q 036932 437 SGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLC 516 (790)
Q Consensus 437 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 516 (790)
++.. ..++|++|++++|.++. +|... .++|+.|++++|++++. .++..+++|++|++++|.+++..|..+.
T Consensus 199 ~~~~----~~~~L~~L~l~~n~l~~-~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 199 STLA----IPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp SEEE----CCSSCSEEECCSSCCCE-EECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cccC----CCCcceEEECCCCeeee-ccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 4321 12345555555555542 22221 24455555555555432 3444455555555555555544444455
Q ss_pred CCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEE
Q 036932 517 QLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVE 596 (790)
Q Consensus 517 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (790)
.+++|+.|++++|+
T Consensus 270 ~l~~L~~L~L~~n~------------------------------------------------------------------ 283 (390)
T 3o6n_A 270 KMQRLERLYISNNR------------------------------------------------------------------ 283 (390)
T ss_dssp TCSSCCEEECCSSC------------------------------------------------------------------
T ss_pred ccccCCEEECCCCc------------------------------------------------------------------
Confidence 55555555555554
Q ss_pred EeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccC
Q 036932 597 FMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQV 675 (790)
Q Consensus 597 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~i 675 (790)
+++ +|..++.+. |+.|+|++|+++ .+|..++.+++|+.|||++|+|++.
T Consensus 284 ---------------------------l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~- 333 (390)
T 3o6n_A 284 ---------------------------LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL- 333 (390)
T ss_dssp ---------------------------CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred ---------------------------Ccc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-
Confidence 442 333333333 666666666666 4566667778888888888888754
Q ss_pred CccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCcCCCCC
Q 036932 676 PPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNLHLCGP 722 (790)
Q Consensus 676 p~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~ 722 (790)
| +..++.|++|++++|+++|.... ..+..+....+.+++..|+.
T Consensus 334 ~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 334 K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 3 56777888888888888875432 23344444556666666654
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.6e-32 Score=296.22 Aligned_cols=270 Identities=20% Similarity=0.201 Sum_probs=229.4
Q ss_pred CCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCc
Q 036932 251 KHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLG 330 (790)
Q Consensus 251 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~ 330 (790)
.+.+++.|++++|.+. .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 4577889999999988 788888778999999999999999877788999999999999999998 66666678899999
Q ss_pred EEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCc
Q 036932 331 LLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM 410 (790)
Q Consensus 331 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n 410 (790)
+|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++.. +..++. |+.+++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~-L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPS-LFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTT-CSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccc-cceeecccc
Confidence 9999999998666666789999999999999999888888999999999999999998542 445566 999999999
Q ss_pred cccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchh
Q 036932 411 FLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQ 490 (790)
Q Consensus 411 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~ 490 (790)
.+++. ...++|+.|++++|.++..... ..++|+.|++++|.+++. ..+..+++|++|++++|++++..|..
T Consensus 197 ~l~~~-----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 197 LLSTL-----AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CCSEE-----ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccccc-----CCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 88742 3346899999999999876433 357899999999999864 57889999999999999999999999
Q ss_pred hhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh
Q 036932 491 ISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537 (790)
Q Consensus 491 ~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~ 537 (790)
+..+++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~ 312 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER 312 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG
T ss_pred ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCc
Confidence 9999999999999999985 4556677888888888888876 4443
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=8.1e-32 Score=288.72 Aligned_cols=305 Identities=23% Similarity=0.315 Sum_probs=209.6
Q ss_pred hcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCc
Q 036932 299 GEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELN 378 (790)
Q Consensus 299 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 378 (790)
..+++|++|++++|.+. .++. +..+++|++|++++|.+++..+ +..+++|++|++++|.++.. ..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred hhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 34455555555555554 3433 3445555555555555554322 55556666666666655532 2355566666
Q ss_pred EEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCc
Q 036932 379 ELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNS 458 (790)
Q Consensus 379 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~ 458 (790)
+|++++|.+.+ ++. +..++. |+.|++++|.....++. +..+++|++|++++|.+.+..+ ...+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~-~~~-~~~l~~-L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISD-ISP-LANLTK-MYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCC-CGG-GTTCTT-CCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccC-chh-hccCCc-eeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc
Confidence 66666666653 222 455555 66666666644433333 6677778888888887776554 2267788888888888
Q ss_pred CccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChh
Q 036932 459 LSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSC 538 (790)
Q Consensus 459 l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~ 538 (790)
+++. +. +..+++|+.|++++|++++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++ ++.
T Consensus 189 l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~- 260 (347)
T 4fmz_A 189 IEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-INA- 260 (347)
T ss_dssp CCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-
T ss_pred cccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Chh-
Confidence 8743 33 7778888888888888886543 7788888888888888875544 7888889999999888873 221
Q ss_pred HHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEE
Q 036932 539 LTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLD 618 (790)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 618 (790)
+ ..++.|+.|+
T Consensus 261 ~---------------------------------------------------------------------~~l~~L~~L~ 271 (347)
T 4fmz_A 261 V---------------------------------------------------------------------KDLTKLKMLN 271 (347)
T ss_dssp G---------------------------------------------------------------------TTCTTCCEEE
T ss_pred H---------------------------------------------------------------------hcCCCcCEEE
Confidence 1 2256788899
Q ss_pred CCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcce
Q 036932 619 LSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLS 696 (790)
Q Consensus 619 Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~ 696 (790)
+++|++++ +| .+..+. |+.|++++|++++..|..++++++|+.|++++|++++..| +..++.|++|++++|+++
T Consensus 272 l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 272 VGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99998885 33 466666 9999999999999999999999999999999999998777 888999999999999875
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.3e-33 Score=293.16 Aligned_cols=249 Identities=28% Similarity=0.448 Sum_probs=182.2
Q ss_pred CCcEEEcccccCcC--CCchhhhhccCCCeEEEccC-ccccccchhhhccCCCCCEEecCCccccCcccccc-cccccce
Q 036932 376 ELNELDISNNLLSG--HIPHWIGNFSSDLKVLLMSK-MFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEH 451 (790)
Q Consensus 376 ~L~~L~Ls~n~l~~--~~p~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~ 451 (790)
+++.|++++|.+.+ .+|..+..++. |++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+ .+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~-L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCC-CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45555555555555 55555555555 66666663 55555666666666666666666666666666655 6667777
Q ss_pred eeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCc-cccEEeccCccccccCCccccCCCCCCEEEccCCc
Q 036932 452 LYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESL-TLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNR 530 (790)
Q Consensus 452 L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~ 530 (790)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |+.|++++|+
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 77777777767777777777777777777777777777777776 777777777777777777777776 7777777777
Q ss_pred CcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcc
Q 036932 531 ISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSN 610 (790)
Q Consensus 531 l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (790)
+++.+|..+. .
T Consensus 209 l~~~~~~~~~---------------------------------------------------------------------~ 219 (313)
T 1ogq_A 209 LEGDASVLFG---------------------------------------------------------------------S 219 (313)
T ss_dssp EEECCGGGCC---------------------------------------------------------------------T
T ss_pred ccCcCCHHHh---------------------------------------------------------------------c
Confidence 7765554331 2
Q ss_pred cccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 036932 611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFN 689 (790)
Q Consensus 611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ 689 (790)
++.|+.|++++|++++.+|. +..+. |+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|.. ..++.|+.++
T Consensus 220 l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~ 297 (313)
T 1ogq_A 220 DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSA 297 (313)
T ss_dssp TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGG
T ss_pred CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHH
Confidence 45677777777777766665 55555 889999999999999999999999999999999999999987 8899999999
Q ss_pred cccCc-cee
Q 036932 690 VSFNN-LSG 697 (790)
Q Consensus 690 ls~N~-l~g 697 (790)
+++|+ +.|
T Consensus 298 l~~N~~lc~ 306 (313)
T 1ogq_A 298 YANNKCLCG 306 (313)
T ss_dssp TCSSSEEES
T ss_pred hcCCCCccC
Confidence 99998 555
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.9e-34 Score=321.99 Aligned_cols=280 Identities=20% Similarity=0.157 Sum_probs=176.0
Q ss_pred CCCCEEEeecCCCCccCChhHHhhcccccEecccCCcccc----ccchhhhcccccccccCcccccccccChhhhhcCC-
Q 036932 253 DFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEG----YLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCI- 327 (790)
Q Consensus 253 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~- 327 (790)
++|++|++++|+++......++..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4578888888888744444445678899999999998875 34666777888999999999887555555555566
Q ss_pred ---cCcEEEccCCcCcc----cccccccCCCCCcEEEcCCccccccccccc-----CCCCCCcEEEcccccCcCCC----
Q 036932 328 ---SLGLLDLSGNNFYG----QIFPKYMNLTQLEFLYLENNKFSGKIEEGL-----SNSNELNELDISNNLLSGHI---- 391 (790)
Q Consensus 328 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~Ls~n~l~~~~---- 391 (790)
+|++|++++|.++. .++..+..+++|++|++++|.++...+..+ ...++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888874 446677788888888888888764433322 23456888888888777533
Q ss_pred chhhhhccCCCeEEEccCccccccchhhhcc-----CCCCCEEecCCccccCc----ccccc-cccccceeeccCCcCcc
Q 036932 392 PHWIGNFSSDLKVLLMSKMFLKGNIPAQLLN-----HGSLNLLSVSENCLSGP----MTSSF-NLSSLEHLYLQMNSLSG 461 (790)
Q Consensus 392 p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~l~~~----~~~~~-~l~~L~~L~L~~n~l~~ 461 (790)
+..+..++. |+.|++++|.+++..+..+.. .++|++|++++|.+++. ++..+ .+++|++|++++|.+++
T Consensus 163 ~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPD-FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHCTT-CCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHhhCCC-CCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 344444455 677777766665544443332 44666666666666653 23333 45666666666666653
Q ss_pred cc-----chhhcCCCCCcEEeccCCccccc----CchhhhcCccccEEeccCccccccCCccccC-----CCCCCEEEcc
Q 036932 462 PI-----PIALFRSSNLITLDLRDNRFSGV----IPHQISESLTLRFLLLRGNYLEGQIPNQLCQ-----LRRLGVLDLS 527 (790)
Q Consensus 462 ~~-----p~~~~~~~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-----l~~L~~L~Ls 527 (790)
.. +..+..+++|+.|++++|++++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|+++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 321 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcC
Confidence 22 11222456666666666666543 3455555666666666666665433333222 2466666666
Q ss_pred CCcCcc
Q 036932 528 HNRISG 533 (790)
Q Consensus 528 ~N~l~g 533 (790)
+|.+++
T Consensus 322 ~n~l~~ 327 (461)
T 1z7x_W 322 SCSFTA 327 (461)
T ss_dssp TSCCBG
T ss_pred CCCCch
Confidence 666653
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.2e-32 Score=309.18 Aligned_cols=315 Identities=20% Similarity=0.179 Sum_probs=234.7
Q ss_pred CCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCc
Q 036932 251 KHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLG 330 (790)
Q Consensus 251 ~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~ 330 (790)
.+..++.+++++|.+. .+|..++..+++|++|++++|.+++..|..++.+++|++|++++|.+. .+|...+.++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCC
Confidence 3567888888888887 788888788999999999999999888889999999999999999998 56666778999999
Q ss_pred EEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCc
Q 036932 331 LLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM 410 (790)
Q Consensus 331 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n 410 (790)
+|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+++.. +..++. |+.|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~-L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPS-LFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTT-CSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhh-hhhhhcccC
Confidence 9999999999776667889999999999999999888888999999999999999998653 444556 999999999
Q ss_pred cccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchh
Q 036932 411 FLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQ 490 (790)
Q Consensus 411 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~ 490 (790)
.+++. ...++|+.|++++|.++...+.. . ++|+.|++++|.+++ +.+
T Consensus 203 ~l~~l-----~~~~~L~~L~ls~n~l~~~~~~~--~------------------------~~L~~L~L~~n~l~~--~~~ 249 (597)
T 3oja_B 203 LLSTL-----AIPIAVEELDASHNSINVVRGPV--N------------------------VELTILKLQHNNLTD--TAW 249 (597)
T ss_dssp CCSEE-----ECCTTCSEEECCSSCCCEEECSC--C------------------------SCCCEEECCSSCCCC--CGG
T ss_pred ccccc-----cCCchhheeeccCCccccccccc--C------------------------CCCCEEECCCCCCCC--Chh
Confidence 88752 23346777777777665433221 1 345555555555553 244
Q ss_pred hhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccc
Q 036932 491 ISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGT 570 (790)
Q Consensus 491 ~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 570 (790)
+..+++|+.|++++|.+++..|..+..+++|+.|+|++|++++ +|..+
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~------------------------------- 297 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG------------------------------- 297 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSS-------------------------------
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccc-------------------------------
Confidence 5556666666666666666666666666666666666666653 22110
Q ss_pred cccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCcccc
Q 036932 571 YYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSG 649 (790)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g 649 (790)
..++.|+.|+|++|.++ .+|..++.+. |+.|+|++|.+++
T Consensus 298 --------------------------------------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~ 338 (597)
T 3oja_B 298 --------------------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 338 (597)
T ss_dssp --------------------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred --------------------------------------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC
Confidence 12456677777777776 5666666665 8888888888875
Q ss_pred ccCccccCCCCCCEEEccCCcccccCCcc
Q 036932 650 SIPGSFSNLKWIESLDLSHNRLSGQVPPR 678 (790)
Q Consensus 650 ~ip~~l~~l~~L~~LdLs~N~lsg~ip~~ 678 (790)
. | ++.+++|+.|+|++|.+++..+..
T Consensus 339 ~-~--~~~~~~L~~L~l~~N~~~~~~~~~ 364 (597)
T 3oja_B 339 L-K--LSTHHTLKNLTLSHNDWDCNSLRA 364 (597)
T ss_dssp C-C--CCTTCCCSEEECCSSCEEHHHHHH
T ss_pred c-C--hhhcCCCCEEEeeCCCCCChhHHH
Confidence 4 3 677889999999999998764433
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7e-31 Score=281.42 Aligned_cols=308 Identities=23% Similarity=0.329 Sum_probs=213.3
Q ss_pred hhcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCc
Q 036932 31 GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLK 110 (790)
Q Consensus 31 ~~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (790)
.+..+++|++|+++++.+..++.+..+++|++|++++|.+++..+ +..+++|++|++++|.+... +++.++++|+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred cchhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 456788899999999988877778888999999999998886543 77888888888888888753 3688888888
Q ss_pred EEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCC
Q 036932 111 VLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPN 190 (790)
Q Consensus 111 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~ 190 (790)
+|++++|++.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~----------------------- 166 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESK----------------------- 166 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSC-----------------------
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCC-----------------------
Confidence 88888888875433 7888888888888886554433 36666666666666554
Q ss_pred CCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCC
Q 036932 191 YNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLP 270 (790)
Q Consensus 191 n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 270 (790)
+..++. +..+++|+.|++++|.+. .++. +..+++|+.+++++|.+++... +..+++|++|++++|.++ .++
T Consensus 167 --~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~ 237 (347)
T 4fmz_A 167 --VKDVTP-IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLS 237 (347)
T ss_dssp --CCCCGG-GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG
T ss_pred --cCCchh-hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCc
Confidence 333332 445555666666666555 3333 3355666666666666555432 445666666666666666 333
Q ss_pred hhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCC
Q 036932 271 EDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNL 350 (790)
Q Consensus 271 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 350 (790)
. +..+++|++|++++|.+++. +.+..+++|++|++++|++. .++ .+..+++|+.|++++|.+.+..+..+..+
T Consensus 238 ~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 238 P--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS-DIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp G--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred c--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC-CCh--hhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 3 23467777777777777642 35667777777777777776 343 25677788888888888877777777788
Q ss_pred CCCcEEEcCCcccccccccccCCCCCCcEEEcccccCc
Q 036932 351 TQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS 388 (790)
Q Consensus 351 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 388 (790)
++|++|++++|++++..| +..+++|++|++++|.++
T Consensus 311 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 888888888888876555 677888888888888764
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.8e-30 Score=276.15 Aligned_cols=286 Identities=22% Similarity=0.236 Sum_probs=158.4
Q ss_pred ccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEc
Q 036932 303 ALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDI 382 (790)
Q Consensus 303 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 382 (790)
+++.++++++.++ .+|..+ .++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4566666666665 566543 256677777777776666666777777777777777777666677777777777777
Q ss_pred ccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccC--cccccc-cccccceeeccCCcC
Q 036932 383 SNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSG--PMTSSF-NLSSLEHLYLQMNSL 459 (790)
Q Consensus 383 s~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~-~l~~L~~L~L~~n~l 459 (790)
++|+++ .+|..+. .. |+.|++++|.+++..+..+..+++|++|++++|.++. ..+..+ .+ +|++|++++|++
T Consensus 110 ~~n~l~-~l~~~~~--~~-L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SS-LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC--TT-CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc--cc-CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 777776 4444333 22 5555555555554444445555555555555555532 333333 22 455555555555
Q ss_pred ccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhH
Q 036932 460 SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCL 539 (790)
Q Consensus 460 ~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~ 539 (790)
++ +|..+. ++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~------------------- 242 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT------------------- 242 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT-------------------
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC-------------------
Confidence 42 333322 34444444444444444444444444444444444444444444444444
Q ss_pred HHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEEC
Q 036932 540 TIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDL 619 (790)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 619 (790)
|+.|++
T Consensus 243 --------------------------------------------------------------------------L~~L~L 248 (332)
T 2ft3_A 243 --------------------------------------------------------------------------LRELHL 248 (332)
T ss_dssp --------------------------------------------------------------------------CCEEEC
T ss_pred --------------------------------------------------------------------------CCEEEC
Confidence 444555
Q ss_pred CCCcccccCChhhhhce-ecceeccCCccccccCccccC------CCCCCEEEccCCccc--ccCCccccCCCCCCeEec
Q 036932 620 SCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSN------LKWIESLDLSHNRLS--GQVPPRLTELNFLSNFNV 690 (790)
Q Consensus 620 s~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~------l~~L~~LdLs~N~ls--g~ip~~l~~l~~L~~L~l 690 (790)
++|+++ .+|..++.+. |+.|++++|++++..+..|.. ..+|+.|++++|.+. +..|..|..++.|+.+++
T Consensus 249 ~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l 327 (332)
T 2ft3_A 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327 (332)
T ss_dssp CSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC
T ss_pred CCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhc
Confidence 555544 4444444444 555555555555544444443 356777777777776 566677777777777777
Q ss_pred ccCc
Q 036932 691 SFNN 694 (790)
Q Consensus 691 s~N~ 694 (790)
++|+
T Consensus 328 ~~n~ 331 (332)
T 2ft3_A 328 GNYK 331 (332)
T ss_dssp ----
T ss_pred cccc
Confidence 7763
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.6e-30 Score=272.13 Aligned_cols=219 Identities=21% Similarity=0.229 Sum_probs=116.6
Q ss_pred ccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEc
Q 036932 303 ALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDI 382 (790)
Q Consensus 303 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 382 (790)
+++.++++++.++ .+|..+ .+++++|++++|.+++..+..+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4555555555554 455432 245666666666666655556666677777777777766666666667777777777
Q ss_pred ccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccC--cccccc-cccccceeeccCCcC
Q 036932 383 SNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSG--PMTSSF-NLSSLEHLYLQMNSL 459 (790)
Q Consensus 383 s~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~-~l~~L~~L~L~~n~l 459 (790)
++|+++ .+|..+. .. |+.|++++|.+++..+..+..+++|++|++++|.++. ..+..+ .+++|++|++++|.+
T Consensus 108 s~n~l~-~l~~~~~--~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KT-LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CSSCCS-BCCSSCC--TT-CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCcCC-ccChhhc--cc-ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 777666 4444332 22 5556665555555555555555556666666555542 233333 444555555555554
Q ss_pred ccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCc
Q 036932 460 SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 460 ~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 532 (790)
+ .+|..+. ++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus 184 ~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 184 T-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp C-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred c-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 4 2333222 34444444444444444444444444444444444444444444444444444444444443
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.5e-32 Score=306.76 Aligned_cols=388 Identities=21% Similarity=0.102 Sum_probs=231.3
Q ss_pred CCCcEEEccCCCCCCCChh-hhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceE
Q 036932 107 SHLKVLDISYNQLSGTLPS-AITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKV 185 (790)
Q Consensus 107 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~ 185 (790)
++|++||+++|+++..... .+..+++|++|++++|.+++...
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~------------------------------------- 45 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC------------------------------------- 45 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH-------------------------------------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH-------------------------------------
Confidence 5677888888877644333 36677777888877777653210
Q ss_pred EeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCC----CCcEEeccCCccccc----ccCCCCCCCCCCE
Q 036932 186 LGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNT----KLEALFLTNNSFTGN----LQLPKTKHDFLHH 257 (790)
Q Consensus 186 L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~----~L~~L~L~~n~l~~~----~~~~~~~~~~L~~ 257 (790)
..++..+..+++|++|++++|.+++..+..++..++ +|++|++++|.++.. .+..+..+++|++
T Consensus 46 --------~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 117 (461)
T 1z7x_W 46 --------KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117 (461)
T ss_dssp --------HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCE
T ss_pred --------HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeE
Confidence 012222333334444444444443222323332333 344555555444421 1122334555555
Q ss_pred EEeecCCCCccCChhHHhh----cccccEecccCCcccccc----chhhhcccccccccCcccccccccChhhh----hc
Q 036932 258 LDVSNNNLTGKLPEDMGII----LQKLLYIDMSDNRFEGYL----PSSIGEMKALIFLRLPKNNFSGELPAPLL----TG 325 (790)
Q Consensus 258 L~Ls~n~l~~~~p~~~~~~----l~~L~~L~Ls~n~l~~~~----p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~----~~ 325 (790)
|++++|.+.+..+..+... .++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+. ..
T Consensus 118 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 197 (461)
T 1z7x_W 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS 197 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHS
T ss_pred EECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcC
Confidence 5555555543323322221 235666777666666532 44455566777777777766533222221 13
Q ss_pred CCcCcEEEccCCcCccc----ccccccCCCCCcEEEcCCccccccc-----ccccCCCCCCcEEEcccccCcCC----Cc
Q 036932 326 CISLGLLDLSGNNFYGQ----IFPKYMNLTQLEFLYLENNKFSGKI-----EEGLSNSNELNELDISNNLLSGH----IP 392 (790)
Q Consensus 326 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~l~~~----~p 392 (790)
.++|++|++++|.++.. ++..+..+++|++|++++|.++... +..+..+++|++|++++|.+++. ++
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 45777777777777653 3455566777777777777765432 22233567777777777777643 45
Q ss_pred hhhhhccCCCeEEEccCccccccchhhhcc-----CCCCCEEecCCccccCcc----cccc-cccccceeeccCCcCccc
Q 036932 393 HWIGNFSSDLKVLLMSKMFLKGNIPAQLLN-----HGSLNLLSVSENCLSGPM----TSSF-NLSSLEHLYLQMNSLSGP 462 (790)
Q Consensus 393 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~----~~~~-~l~~L~~L~L~~n~l~~~ 462 (790)
..+..++. |+.|++++|.+++..+..+.. .++|++|++++|.+++.. +..+ .+++|++|++++|.+++.
T Consensus 278 ~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 278 RVLRAKES-LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHHCTT-CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHHhhCCC-cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 55666666 777777777776554444433 257888888888887653 3333 568888888888888765
Q ss_pred cchhhcC-----CCCCcEEeccCCcccc----cCchhhhcCccccEEeccCccccccCCcccc-----CCCCCCEEEccC
Q 036932 463 IPIALFR-----SSNLITLDLRDNRFSG----VIPHQISESLTLRFLLLRGNYLEGQIPNQLC-----QLRRLGVLDLSH 528 (790)
Q Consensus 463 ~p~~~~~-----~~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~-----~l~~L~~L~Ls~ 528 (790)
.+..+.. .++|++|++++|++++ .+|.++..+++|++|++++|++++.....+. ...+|+.|++.+
T Consensus 357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~ 436 (461)
T 1z7x_W 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD 436 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecc
Confidence 5544432 6788999999998886 6777888888899999999988754222221 245788888888
Q ss_pred CcCcccCChhHH
Q 036932 529 NRISGSIPSCLT 540 (790)
Q Consensus 529 N~l~g~~p~~~~ 540 (790)
+.+....+..+.
T Consensus 437 ~~~~~~~~~~l~ 448 (461)
T 1z7x_W 437 IYWSEEMEDRLQ 448 (461)
T ss_dssp CCCCHHHHHHHH
T ss_pred cccCHHHHHHHH
Confidence 887755444433
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=4.6e-30 Score=272.95 Aligned_cols=287 Identities=21% Similarity=0.207 Sum_probs=228.4
Q ss_pred CCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccC
Q 036932 230 KLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRL 309 (790)
Q Consensus 230 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 309 (790)
+++.++++++.++.. |....+.+++|++++|.+. .++...+..+++|++|++++|.+++..|..++.+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~i---p~~~~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAV---PKEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSC---CSCCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcccc---CCCCCCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 355566666555432 2223456777777777777 444433455788888888888888777888888888888888
Q ss_pred cccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCccccc--ccccccCCCCCCcEEEcccccC
Q 036932 310 PKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSG--KIEEGLSNSNELNELDISNNLL 387 (790)
Q Consensus 310 s~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l 387 (790)
++|+++ .+|..++ ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|++
T Consensus 110 ~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 888887 7776543 788999999998887777778888999999999998853 667777777 899999999998
Q ss_pred cCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchh
Q 036932 388 SGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIA 466 (790)
Q Consensus 388 ~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~ 466 (790)
++ +|..+. .. |+.|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|+++ .+|..
T Consensus 185 ~~-l~~~~~--~~-L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 259 (332)
T 2ft3_A 185 TG-IPKDLP--ET-LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259 (332)
T ss_dssp SS-CCSSSC--SS-CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred Cc-cCcccc--CC-CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence 84 665544 33 9999999999998888889999999999999999999888777 8899999999999998 78888
Q ss_pred hcCCCCCcEEeccCCcccccCchhhhc------CccccEEeccCcccc--ccCCccccCCCCCCEEEccCCc
Q 036932 467 LFRSSNLITLDLRDNRFSGVIPHQISE------SLTLRFLLLRGNYLE--GQIPNQLCQLRRLGVLDLSHNR 530 (790)
Q Consensus 467 ~~~~~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~Ls~N~ 530 (790)
+..+++|++|++++|++++..+..+.. ...|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999999999877776654 367899999999987 6778889999999999999985
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.3e-29 Score=269.33 Aligned_cols=268 Identities=20% Similarity=0.208 Sum_probs=204.1
Q ss_pred CCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEE
Q 036932 253 DFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLL 332 (790)
Q Consensus 253 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L 332 (790)
+.+++|++++|.++ .++...+..+++|++|++++|.+++..|..++.+++|++|++++|+++ .+|..++ ++|++|
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L 126 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQEL 126 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEE
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEE
Confidence 45666666666666 344433345677777777777777666777777777777777777776 6666543 677888
Q ss_pred EccCCcCcccccccccCCCCCcEEEcCCccccc--ccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCc
Q 036932 333 DLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSG--KIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKM 410 (790)
Q Consensus 333 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n 410 (790)
++++|.+.+..+..+.++++|++|++++|.++. ..+..+..+++|++|++++|.++ .+|..+. +. |+.|++++|
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~-L~~L~l~~n 202 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PS-LTELHLDGN 202 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TT-CSEEECTTS
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--cc-CCEEECCCC
Confidence 888888877666677778888888888887753 56667777888888888888887 4555443 33 888888888
Q ss_pred cccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCch
Q 036932 411 FLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPH 489 (790)
Q Consensus 411 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~ 489 (790)
.+++..|..+..+++|++|++++|.+++..+..+ .+++|++|++++|+++ .+|..+..+++|++|++++|++++..+.
T Consensus 203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChh
Confidence 8888778888888999999999999988777666 7889999999999998 7888889999999999999999977766
Q ss_pred hhhc------CccccEEeccCccccc--cCCccccCCCCCCEEEccCCc
Q 036932 490 QISE------SLTLRFLLLRGNYLEG--QIPNQLCQLRRLGVLDLSHNR 530 (790)
Q Consensus 490 ~~~~------l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~Ls~N~ 530 (790)
.+.. .+.++.|++++|.+.. ..|..+..+++++.++|++|+
T Consensus 282 ~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 282 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred hcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6643 3678899999998863 567788889999999999985
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.1e-29 Score=266.70 Aligned_cols=280 Identities=17% Similarity=0.154 Sum_probs=160.7
Q ss_pred CCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEE
Q 036932 326 CISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVL 405 (790)
Q Consensus 326 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L 405 (790)
|+.....+.+++.++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..|..+..++. |++|
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS-LEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEE
T ss_pred CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC-CCEE
Confidence 4444556666666653 333322 46666666666666555556666666666666666666554555555544 5555
Q ss_pred EccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCC-ccc
Q 036932 406 LMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN-RFS 484 (790)
Q Consensus 406 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N-~l~ 484 (790)
++++|.+++..+..+..+++|++|++++|.+++..+. ..+..+++|++|++++| .++
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~----------------------~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET----------------------SLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS----------------------CSCTTCTTCCEEEEEESSSCC
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch----------------------hhhccCCCCcEEECCCCcccc
Confidence 5555555443333344444444444444444433220 24445555555555555 344
Q ss_pred ccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccc
Q 036932 485 GVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIF 564 (790)
Q Consensus 485 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (790)
+..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++. .+|..+.
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~------------------------ 218 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV------------------------ 218 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHH------------------------
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhh------------------------
Confidence 444445555555555555555555555555555555555555555553 2222211
Q ss_pred cccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce----ecce
Q 036932 565 VGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ----IRGL 640 (790)
Q Consensus 565 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~----L~~L 640 (790)
..++.|+.|++++|++++..+..+.... ++.+
T Consensus 219 --------------------------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l 254 (353)
T 2z80_A 219 --------------------------------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254 (353)
T ss_dssp --------------------------------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred --------------------------------------------hhcccccEEECCCCccccccccccccccccchhhcc
Confidence 0134555556666655544443333211 5555
Q ss_pred eccCCcccc----ccCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCCeEecccCcceecCCC
Q 036932 641 NLSYNFLSG----SIPGSFSNLKWIESLDLSHNRLSGQVPPR-LTELNFLSNFNVSFNNLSGLIPD 701 (790)
Q Consensus 641 ~Ls~N~l~g----~ip~~l~~l~~L~~LdLs~N~lsg~ip~~-l~~l~~L~~L~ls~N~l~g~iP~ 701 (790)
+|+++.+++ .+|+.++++++|+.|||++|+|+ .+|.. |..+++|++|++++|+++|.+|.
T Consensus 255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 555555554 57888999999999999999999 55655 58999999999999999998873
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=8e-30 Score=294.05 Aligned_cols=378 Identities=14% Similarity=0.037 Sum_probs=193.0
Q ss_pred CCCCCEEEeecCCCCccCChhHHhhccc-ccEecccCCc-ccc-ccchhhhcccccccccCcccccccccC---hhhhhc
Q 036932 252 HDFLHHLDVSNNNLTGKLPEDMGIILQK-LLYIDMSDNR-FEG-YLPSSIGEMKALIFLRLPKNNFSGELP---APLLTG 325 (790)
Q Consensus 252 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~-L~~L~Ls~n~-l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~i~---~~~~~~ 325 (790)
+++|++|++++|.+++..+..+...+++ |++|++++|. ++. .++.....+++|++|++++|.+.+.-. ......
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~ 190 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQH 190 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhc
Confidence 4455555555555543333333332333 5555555554 111 112222345555556665555543211 112334
Q ss_pred CCcCcEEEccCCcCcc----cccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCc---CCCchhhhhc
Q 036932 326 CISLGLLDLSGNNFYG----QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS---GHIPHWIGNF 398 (790)
Q Consensus 326 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~---~~~p~~~~~~ 398 (790)
+++|++|++++|.+.+ .++..+.++++|++|++++|.+.+ ++..+..+++|+.|+++..... +..+..+..+
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 5556666666555542 222233445566666666655553 3445555566666665542221 1222333444
Q ss_pred cCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCccccc-c-cccccceeeccCCcCccccchhhcCCCCCcEE
Q 036932 399 SSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSS-F-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITL 476 (790)
Q Consensus 399 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L 476 (790)
.. |+.++++++. .+.+|..+..+++|++|++++|.+++..... + .+++|++|+++++-..+.++.....+++|++|
T Consensus 270 ~~-L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 270 RK-LCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TT-CCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEE
T ss_pred cc-ccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEE
Confidence 44 6666655532 2345555555666666666666654433322 2 56666666666322222233344556666677
Q ss_pred eccC-----------CcccccCc-hhhhcCccccEEeccCccccccCCccccC-CCCCCEEEcc----CCcCcccCCh-h
Q 036932 477 DLRD-----------NRFSGVIP-HQISESLTLRFLLLRGNYLEGQIPNQLCQ-LRRLGVLDLS----HNRISGSIPS-C 538 (790)
Q Consensus 477 ~L~~-----------N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~-l~~L~~L~Ls----~N~l~g~~p~-~ 538 (790)
++++ |.+++... .....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.... .
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~ 427 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNG 427 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHH
Confidence 6662 44543322 22344666777777666666655555544 6677777775 4555532111 1
Q ss_pred HHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEE
Q 036932 539 LTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLD 618 (790)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 618 (790)
+.... ..++.|+.|+
T Consensus 428 ~~~~~-----------------------------------------------------------------~~~~~L~~L~ 442 (592)
T 3ogk_B 428 VRSLL-----------------------------------------------------------------IGCKKLRRFA 442 (592)
T ss_dssp HHHHH-----------------------------------------------------------------HHCTTCCEEE
T ss_pred HHHHH-----------------------------------------------------------------HhCCCCCEEE
Confidence 11100 1245666667
Q ss_pred CCCC--cccccCChhhhh-ce-ecceeccCCcccc-ccCccccCCCCCCEEEccCCccccc-CCccccCCCCCCeEeccc
Q 036932 619 LSCN--QLTGGIPSEIGD-LQ-IRGLNLSYNFLSG-SIPGSFSNLKWIESLDLSHNRLSGQ-VPPRLTELNFLSNFNVSF 692 (790)
Q Consensus 619 Ls~N--~l~g~ip~~~~~-l~-L~~L~Ls~N~l~g-~ip~~l~~l~~L~~LdLs~N~lsg~-ip~~l~~l~~L~~L~ls~ 692 (790)
++++ .+++..+..++. +. |+.|+|++|++++ .++..+.++++|+.|||++|.+++. ++.....+++|++|++++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence 6533 355555555544 33 7777777777765 3344456677777777777777654 333344567777777777
Q ss_pred Cccee
Q 036932 693 NNLSG 697 (790)
Q Consensus 693 N~l~g 697 (790)
|++++
T Consensus 523 n~it~ 527 (592)
T 3ogk_B 523 YRASM 527 (592)
T ss_dssp CBCCT
T ss_pred CcCCH
Confidence 77654
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.2e-29 Score=290.39 Aligned_cols=426 Identities=12% Similarity=0.053 Sum_probs=311.3
Q ss_pred CcchhhhCCCCCCEEEccCCCCC---CcCc-----------hhHhhCCCCCcEEeccCCcccccccCCCCC-CCC-CCEE
Q 036932 195 VIPSFLLHQYDLKLLDLSGNNLV---GDFP-----------TWVLRNNTKLEALFLTNNSFTGNLQLPKTK-HDF-LHHL 258 (790)
Q Consensus 195 ~lp~~l~~l~~L~~L~Ls~n~l~---~~ip-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~-L~~L 258 (790)
..+..+..+++|+.|+++++... +.+| ..+...+++|++|+|++|.+++.....+.. ++. |++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 34456677899999999885321 1222 223347899999999999877543222222 334 9999
Q ss_pred EeecCC-CCccCChhHHhhcccccEecccCCccccc----cchhhhcccccccccCcccccc----cccChhhhhcCCcC
Q 036932 259 DVSNNN-LTGKLPEDMGIILQKLLYIDMSDNRFEGY----LPSSIGEMKALIFLRLPKNNFS----GELPAPLLTGCISL 329 (790)
Q Consensus 259 ~Ls~n~-l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~----~~i~~~~~~~l~~L 329 (790)
++++|. +...-...+...+++|++|++++|.+++. ++.....+++|++|++++|.+. +.++ .++..+++|
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L 222 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSL 222 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhCCCC
Confidence 999987 22111122234689999999999998766 4445677899999999999986 2232 234689999
Q ss_pred cEEEccCCcCcccccccccCCCCCcEEEcCCcccc---cccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEE
Q 036932 330 GLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFS---GKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLL 406 (790)
Q Consensus 330 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~ 406 (790)
++|++++|.+.+ ++..+..+++|++|+++..... +..+..+..+++|+.++++++.. +.+|..+..++. |+.|+
T Consensus 223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~-L~~L~ 299 (592)
T 3ogk_B 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQ-IRKLD 299 (592)
T ss_dssp CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGG-CCEEE
T ss_pred cEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCC-CcEEe
Confidence 999999999886 5677889999999999864332 23445677889999999998643 467888888887 99999
Q ss_pred ccCccccccch-hhhccCCCCCEEecCCccccCc-ccccc-cccccceeecc-----------CCcCccc-cchhhcCCC
Q 036932 407 MSKMFLKGNIP-AQLLNHGSLNLLSVSENCLSGP-MTSSF-NLSSLEHLYLQ-----------MNSLSGP-IPIALFRSS 471 (790)
Q Consensus 407 l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~-~~~~~-~l~~L~~L~L~-----------~n~l~~~-~p~~~~~~~ 471 (790)
+++|.+++... ..+..+++|+.|+++ +.+.+. ++... .+++|++|+++ .|.+++. ++.....++
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 99999776544 446889999999999 444433 33333 68999999999 3667644 333356689
Q ss_pred CCcEEeccCCcccccCchhhhc-CccccEEecc----Ccccccc-----CCccccCCCCCCEEEccCCc--CcccCChhH
Q 036932 472 NLITLDLRDNRFSGVIPHQISE-SLTLRFLLLR----GNYLEGQ-----IPNQLCQLRRLGVLDLSHNR--ISGSIPSCL 539 (790)
Q Consensus 472 ~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~----~N~l~~~-----~~~~l~~l~~L~~L~Ls~N~--l~g~~p~~~ 539 (790)
+|+.|+++.|++++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++..+..+
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 9999999999999887777765 8999999996 6778763 44456779999999998654 554333322
Q ss_pred HHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEEC
Q 036932 540 TIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDL 619 (790)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 619 (790)
. ..++.|+.|++
T Consensus 459 ~--------------------------------------------------------------------~~~~~L~~L~L 470 (592)
T 3ogk_B 459 G--------------------------------------------------------------------QYSPNVRWMLL 470 (592)
T ss_dssp H--------------------------------------------------------------------HSCTTCCEEEE
T ss_pred H--------------------------------------------------------------------HhCccceEeec
Confidence 1 12568999999
Q ss_pred CCCcccc-cCChhhhhce-ecceeccCCcccccc-CccccCCCCCCEEEccCCcccccCCcccc-CCCCCCeEecccC
Q 036932 620 SCNQLTG-GIPSEIGDLQ-IRGLNLSYNFLSGSI-PGSFSNLKWIESLDLSHNRLSGQVPPRLT-ELNFLSNFNVSFN 693 (790)
Q Consensus 620 s~N~l~g-~ip~~~~~l~-L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~lsg~ip~~l~-~l~~L~~L~ls~N 693 (790)
++|++++ .++..+..+. |+.|+|++|.+++.. +..+..+++|+.|+|++|++++.-...++ .++.+....+..+
T Consensus 471 ~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 471 GYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 9999987 3455556666 999999999998764 44557899999999999999876444443 4565555544443
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=7e-28 Score=253.08 Aligned_cols=229 Identities=21% Similarity=0.184 Sum_probs=169.8
Q ss_pred CeEEEccCccccccchhhhccCCCCCEEecCCccccCcc--cccc-cccccceeeccCCcCccccchhhcCCCCCcEEec
Q 036932 402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPM--TSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDL 478 (790)
Q Consensus 402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L 478 (790)
++.|++++|.++...+..+..+++|++|++++|.++... +..+ .+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEEC
T ss_pred CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEEC
Confidence 444444444444322233455566666666666665332 2223 5677777777777776 46666777788888888
Q ss_pred cCCcccccCc-hhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcc-cCChhHHHHHHhhcccccCCCcc
Q 036932 479 RDNRFSGVIP-HQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISG-SIPSCLTIMLLWVAGNVYLHEPY 556 (790)
Q Consensus 479 ~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~ 556 (790)
++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++ .+|..+
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------------- 171 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF----------------- 171 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC-----------------
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH-----------------
Confidence 8888876554 467778888888888888887777778888888888888888764 234322
Q ss_pred cccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce
Q 036932 557 LQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ 636 (790)
Q Consensus 557 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~ 636 (790)
..++.|+.|++++|++++..|..++.+.
T Consensus 172 ----------------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 199 (306)
T 2z66_A 172 ----------------------------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLS 199 (306)
T ss_dssp ----------------------------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ----------------------------------------------------hhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence 2256788888888888877788888776
Q ss_pred -ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCC-CCCeEecccCcceecCC
Q 036932 637 -IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELN-FLSNFNVSFNNLSGLIP 700 (790)
Q Consensus 637 -L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~-~L~~L~ls~N~l~g~iP 700 (790)
|+.|+|++|++++..+..++.+++|+.|||++|++++.+|..+..++ .|++|++++|+++|.++
T Consensus 200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 99999999999988888899999999999999999999999999984 99999999999998765
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.5e-27 Score=250.60 Aligned_cols=250 Identities=20% Similarity=0.235 Sum_probs=160.5
Q ss_pred CEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCccccccc--ccChhhhhcCCcCcEEE
Q 036932 256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSG--ELPAPLLTGCISLGLLD 333 (790)
Q Consensus 256 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~i~~~~~~~l~~L~~L~ 333 (790)
+.++.+++.++ .+|..+ .++|++|++++|.++...+..+..+++|++|++++|.+.. .++... ..+++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEE
Confidence 46677777776 666544 3566666776666663333345566666666666666541 112222 2455555555
Q ss_pred ccCCcCcccccccccCCCCCcEEEcCCcccccccc-cccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccc
Q 036932 334 LSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIE-EGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFL 412 (790)
Q Consensus 334 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l 412 (790)
+++|.+.. ++..+..+++|++|++++|.+++..+ ..+..+++ |++|++++|.+
T Consensus 85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-------------------------L~~L~l~~n~l 138 (306)
T 2z66_A 85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-------------------------LIYLDISHTHT 138 (306)
T ss_dssp CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTT-------------------------CCEEECTTSCC
T ss_pred CCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccC-------------------------CCEEECCCCcC
Confidence 55555542 33334455555555555555443322 23444444 44444444444
Q ss_pred cccchhhhccCCCCCEEecCCccccC-cccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchh
Q 036932 413 KGNIPAQLLNHGSLNLLSVSENCLSG-PMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQ 490 (790)
Q Consensus 413 ~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~ 490 (790)
.+..+..+..+++|++|++++|.+++ ..+..+ .+++|++|++++|++++..|..+..+++|++|++++|++++..+..
T Consensus 139 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 218 (306)
T 2z66_A 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218 (306)
T ss_dssp EECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred CccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh
Confidence 44455555566667777777777765 445555 6778888888888888766778888888888888888888777777
Q ss_pred hhcCccccEEeccCccccccCCccccCCC-CCCEEEccCCcCcccCC
Q 036932 491 ISESLTLRFLLLRGNYLEGQIPNQLCQLR-RLGVLDLSHNRISGSIP 536 (790)
Q Consensus 491 ~~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~Ls~N~l~g~~p 536 (790)
+..+++|+.|++++|++++..|..+..++ +|+.|++++|++++..+
T Consensus 219 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 219 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 88888888888888888888888888874 88888998888886543
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=6.4e-28 Score=258.76 Aligned_cols=274 Identities=20% Similarity=0.140 Sum_probs=167.5
Q ss_pred EEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccC
Q 036932 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSG 336 (790)
Q Consensus 257 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~ 336 (790)
..+.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|+++ .++...+.++++|++|++++
T Consensus 35 ~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECCC
Confidence 3455555555 455443 235555555555555444445555555555555555555 33333344555555555555
Q ss_pred CcCcccccccccCCCCCcEEEcCCcccccccc-cccCCCCCCcEEEcccc-cCcCCCchhhhhccCCCeEEEccCccccc
Q 036932 337 NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIE-EGLSNSNELNELDISNN-LLSGHIPHWIGNFSSDLKVLLMSKMFLKG 414 (790)
Q Consensus 337 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~~~~~L~~L~l~~n~l~~ 414 (790)
|.+++..+..+.++++|++|++++|++++..+ ..+..+++|++|++++| .+.+..+..+..++. |+.|++++|.+++
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~-L~~L~l~~n~l~~ 188 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF-LEELEIDASDLQS 188 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE-EEEEEEEETTCCE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC-CCEEECCCCCcCc
Confidence 55554444445555556666666555553322 24555566666666665 344444445555555 6666666666665
Q ss_pred cchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhh---cCCCCCcEEeccCCcccc----c
Q 036932 415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIAL---FRSSNLITLDLRDNRFSG----V 486 (790)
Q Consensus 415 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~---~~~~~L~~L~L~~N~l~~----~ 486 (790)
..|..+..+++|++|++++|.++......+ .+++|++|++++|.+++..+..+ .....++.++++++++++ .
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 556666666666666666666654433333 46677777777777765443332 235677888888888775 4
Q ss_pred CchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932 487 IPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536 (790)
Q Consensus 487 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p 536 (790)
+|.++..+++|++|++++|+++...+..+..+++|+.|++++|++.+..|
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 67788999999999999999994444446899999999999999998776
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=8.7e-27 Score=258.68 Aligned_cols=248 Identities=22% Similarity=0.192 Sum_probs=198.9
Q ss_pred cEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccC
Q 036932 378 NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQM 456 (790)
Q Consensus 378 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~ 456 (790)
..++.++..++ .+|..+. ..++.|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|+|++
T Consensus 57 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34444444444 3443322 226666666666666666677777788888888888887777777 788888888888
Q ss_pred CcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCc-cccccCCccccCCCCCCEEEccCCcCcccC
Q 036932 457 NSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN-YLEGQIPNQLCQLRRLGVLDLSHNRISGSI 535 (790)
Q Consensus 457 n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~ 535 (790)
|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++| .+....+..+..+++|+.|++++|++++ +
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 8888666667888889999999999988777778888999999999984 4554445578889999999999999873 3
Q ss_pred ChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccce
Q 036932 536 PSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMV 615 (790)
Q Consensus 536 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 615 (790)
|. + ..++.|+
T Consensus 212 ~~-~---------------------------------------------------------------------~~l~~L~ 221 (452)
T 3zyi_A 212 PN-L---------------------------------------------------------------------TPLVGLE 221 (452)
T ss_dssp CC-C---------------------------------------------------------------------TTCTTCC
T ss_pred cc-c---------------------------------------------------------------------ccccccc
Confidence 32 0 2256899
Q ss_pred EEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCc
Q 036932 616 GLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNN 694 (790)
Q Consensus 616 ~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~ 694 (790)
.|+|++|++++..|..+..+. |+.|+|++|++++..|..|.++++|+.|||++|+|++..+..+..+++|+.|+|++|+
T Consensus 222 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp EEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred EEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 999999999988899999887 9999999999999999999999999999999999999888899999999999999999
Q ss_pred ceecCC
Q 036932 695 LSGLIP 700 (790)
Q Consensus 695 l~g~iP 700 (790)
+.|.+.
T Consensus 302 ~~CdC~ 307 (452)
T 3zyi_A 302 WNCDCD 307 (452)
T ss_dssp EECSTT
T ss_pred cCCCCC
Confidence 998765
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.8e-27 Score=250.22 Aligned_cols=224 Identities=19% Similarity=0.233 Sum_probs=159.3
Q ss_pred CCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeec
Q 036932 375 NELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYL 454 (790)
Q Consensus 375 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L 454 (790)
+.++.|++++|.++ .+|..++.++. |++|++++|.++ .+|..+. .+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~-L~~L~L~~n~l~-~lp~~~~-----------------------~l~~L~~L~L 134 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSH-LQHMTIDAAGLM-ELPDTMQ-----------------------QFAGLETLTL 134 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTT-CSEEEEESSCCC-CCCSCGG-----------------------GGTTCSEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCC-CCEEECCCCCcc-chhHHHh-----------------------ccCCCCEEEC
Confidence 55666677666666 55555555444 444444444444 3444444 4555555555
Q ss_pred cCCcCccccchhhcCCCCCcEEeccCCcccccCchhhh---------cCccccEEeccCccccccCCccccCCCCCCEEE
Q 036932 455 QMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQIS---------ESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLD 525 (790)
Q Consensus 455 ~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~---------~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~ 525 (790)
++|+++ .+|..+..+++|++|++++|++.+.+|..+. .+++|++|++++|+++ .+|..+..+++|+.|+
T Consensus 135 s~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~ 212 (328)
T 4fcg_A 135 ARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLK 212 (328)
T ss_dssp ESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEE
T ss_pred CCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEE
Confidence 555555 4555555556666666666555555555443 4788888888888887 7777788888888888
Q ss_pred ccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceec
Q 036932 526 LSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYEL 605 (790)
Q Consensus 526 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (790)
+++|++++ +|..+.
T Consensus 213 L~~N~l~~-l~~~l~----------------------------------------------------------------- 226 (328)
T 4fcg_A 213 IRNSPLSA-LGPAIH----------------------------------------------------------------- 226 (328)
T ss_dssp EESSCCCC-CCGGGG-----------------------------------------------------------------
T ss_pred ccCCCCCc-Cchhhc-----------------------------------------------------------------
Confidence 88888873 554332
Q ss_pred ccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 036932 606 YNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNF 684 (790)
Q Consensus 606 ~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~ 684 (790)
.++.|+.|++++|.+.+.+|..++.+. |+.|+|++|++.+.+|..++++++|+.|||++|.+.|.+|..++.++.
T Consensus 227 ----~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 227 ----HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp ----GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred ----cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 246788888888888888888888887 888999998888899988999999999999999999999999999999
Q ss_pred CCeEecccCcce
Q 036932 685 LSNFNVSFNNLS 696 (790)
Q Consensus 685 L~~L~ls~N~l~ 696 (790)
|+.+++..|.+.
T Consensus 303 L~~l~l~~~~~~ 314 (328)
T 4fcg_A 303 NCIILVPPHLQA 314 (328)
T ss_dssp TCEEECCGGGSC
T ss_pred ceEEeCCHHHHH
Confidence 999988876554
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=9.7e-27 Score=257.34 Aligned_cols=248 Identities=22% Similarity=0.211 Sum_probs=201.5
Q ss_pred cEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccC
Q 036932 378 NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQM 456 (790)
Q Consensus 378 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~ 456 (790)
+.++.+++.++ .+|..+. .+++.|++++|.+++..+..+.++++|++|++++|.+++..+..+ .+++|++|+|++
T Consensus 46 ~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 44555555555 4444332 226666666666666666777777888888888888887777777 788888888888
Q ss_pred CcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCc-cccccCCccccCCCCCCEEEccCCcCcccC
Q 036932 457 NSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN-YLEGQIPNQLCQLRRLGVLDLSHNRISGSI 535 (790)
Q Consensus 457 n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~ 535 (790)
|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++| .+....+..+..+++|+.|++++|+++ .+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc
Confidence 8888666667888889999999999998877778888999999999985 455445557888999999999999987 44
Q ss_pred ChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccce
Q 036932 536 PSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMV 615 (790)
Q Consensus 536 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 615 (790)
|. + ..++.|+
T Consensus 201 ~~-~---------------------------------------------------------------------~~l~~L~ 210 (440)
T 3zyj_A 201 PN-L---------------------------------------------------------------------TPLIKLD 210 (440)
T ss_dssp CC-C---------------------------------------------------------------------TTCSSCC
T ss_pred cc-c---------------------------------------------------------------------CCCcccC
Confidence 42 0 2256899
Q ss_pred EEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCc
Q 036932 616 GLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNN 694 (790)
Q Consensus 616 ~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~ 694 (790)
.|||++|++++..|..+..+. |+.|+|++|++++..|..|.++++|+.|||++|+|++..+..|..+++|+.|+|++|+
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 999999999988899998887 9999999999999999999999999999999999999988999999999999999999
Q ss_pred ceecCC
Q 036932 695 LSGLIP 700 (790)
Q Consensus 695 l~g~iP 700 (790)
+.|.+.
T Consensus 291 ~~CdC~ 296 (440)
T 3zyj_A 291 WNCNCD 296 (440)
T ss_dssp EECSST
T ss_pred ccCCCC
Confidence 998764
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.8e-28 Score=256.48 Aligned_cols=247 Identities=21% Similarity=0.219 Sum_probs=175.1
Q ss_pred CCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccc-cccchhhhc-------cCCCCCEEecCCccccCcccccc-
Q 036932 374 SNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFL-KGNIPAQLL-------NHGSLNLLSVSENCLSGPMTSSF- 444 (790)
Q Consensus 374 l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~- 444 (790)
.++|+.+++++|.+ .+|..+... ++.|++++|.+ ...+|..+. .+++|++|++++|.+++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34555666666666 455544433 55666666666 334555444 56778888888888777666542
Q ss_pred --cccccceeeccCCcCccccchhhcCC-----CCCcEEeccCCcccccCchhhhcCccccEEeccCcccccc--CCccc
Q 036932 445 --NLSSLEHLYLQMNSLSGPIPIALFRS-----SNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQ--IPNQL 515 (790)
Q Consensus 445 --~l~~L~~L~L~~n~l~~~~p~~~~~~-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~l 515 (790)
.+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..+..+++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 677888888888888765 6666655 7888888888888877778888888888888888887665 23344
Q ss_pred --cCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcce
Q 036932 516 --CQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLV 593 (790)
Q Consensus 516 --~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (790)
..+++|+.|++++|++++ +|.....+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~-------------------------------------------------- 224 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMET-PSGVCSALA-------------------------------------------------- 224 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCC-HHHHHHHHH--------------------------------------------------
T ss_pred HhccCCCCCEEECCCCcCcc-hHHHHHHHH--------------------------------------------------
Confidence 778888888888888872 221111000
Q ss_pred EEEEeeccceecccCcccccceEEECCCCcccccCC-hhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcc
Q 036932 594 KVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIP-SEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRL 671 (790)
Q Consensus 594 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip-~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~l 671 (790)
..++.|+.||+++|++++.+| ..+..+. |+.|+|++|+|+ .+|..+. ++|+.|||++|+|
T Consensus 225 ---------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 225 ---------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp ---------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC
T ss_pred ---------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC
Confidence 124678888888888887775 3344444 888999999988 7787776 8899999999999
Q ss_pred cccCCccccCCCCCCeEecccCccee
Q 036932 672 SGQVPPRLTELNFLSNFNVSFNNLSG 697 (790)
Q Consensus 672 sg~ip~~l~~l~~L~~L~ls~N~l~g 697 (790)
++. |. +..+++|++|++++|++++
T Consensus 287 ~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 287 DRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 876 65 8888899999999998875
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.9e-28 Score=255.97 Aligned_cols=263 Identities=19% Similarity=0.173 Sum_probs=193.8
Q ss_pred EEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCcc
Q 036932 356 LYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENC 435 (790)
Q Consensus 356 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~ 435 (790)
.+++.+.+.......+..+++|++|++++|.+++..|..+..++. |+.|++++|.+++..+ +..+++|++|++++|.
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTT-CCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCc-CCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 344444444333333444455566666666655555555555555 6666666666554443 6667778888888887
Q ss_pred ccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccc
Q 036932 436 LSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQL 515 (790)
Q Consensus 436 l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l 515 (790)
+++..+ .++|++|++++|++++..+.. +++|+.|++++|++++..+..+..+++|++|++++|.+++..+..+
T Consensus 92 l~~l~~----~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 92 VQELLV----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEEEE----CTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred cccccC----CCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 775442 378888888888888654443 5678999999999988777788888999999999999988777766
Q ss_pred c-CCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceE
Q 036932 516 C-QLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVK 594 (790)
Q Consensus 516 ~-~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (790)
. .+++|+.|++++|++++. |..
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~-~~~-------------------------------------------------------- 187 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV-KGQ-------------------------------------------------------- 187 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE-ECC--------------------------------------------------------
T ss_pred hhccCcCCEEECCCCcCccc-ccc--------------------------------------------------------
Confidence 4 689999999999998732 210
Q ss_pred EEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCccc-
Q 036932 595 VEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLS- 672 (790)
Q Consensus 595 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~ls- 672 (790)
..++.|+.|+|++|++++ +|..+..+. |+.|+|++|+++ .+|..++.+++|+.||+++|.++
T Consensus 188 --------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 188 --------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp --------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred --------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 115688999999999984 555677776 999999999999 57888999999999999999999
Q ss_pred ccCCccccCCCCCCeEeccc-CcceecCCC
Q 036932 673 GQVPPRLTELNFLSNFNVSF-NNLSGLIPD 701 (790)
Q Consensus 673 g~ip~~l~~l~~L~~L~ls~-N~l~g~iP~ 701 (790)
+.+|..+..++.|+.+++++ +.++|..|.
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cCHHHHHhccccceEEECCCchhccCCchh
Confidence 88999999999999999984 467776654
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=2.7e-26 Score=238.26 Aligned_cols=226 Identities=23% Similarity=0.266 Sum_probs=155.2
Q ss_pred cccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccc
Q 036932 306 FLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNN 385 (790)
Q Consensus 306 ~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 385 (790)
+++.+++.++ .+|... .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 15 ~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 15 TTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp EEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred EEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4555555555 555432 346666666666666655556666667777777777666666666666777777777777
Q ss_pred c-CcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCcccc
Q 036932 386 L-LSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPI 463 (790)
Q Consensus 386 ~-l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~ 463 (790)
+ +....|..+..++. |+.|++++|.+++..|..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..
T Consensus 91 ~~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGR-LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCccccCHHHhcCCcC-CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 5 55444556666655 6666666666666666666677777777777777776666655 6777777777777777555
Q ss_pred chhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932 464 PIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536 (790)
Q Consensus 464 p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p 536 (790)
+..+..+++|+.|++++|++++..|.++..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 5567777778888888888777777777777778888888887776666667777788888888887775444
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.7e-26 Score=242.66 Aligned_cols=224 Identities=20% Similarity=0.219 Sum_probs=146.4
Q ss_pred ccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEc
Q 036932 303 ALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDI 382 (790)
Q Consensus 303 ~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 382 (790)
+++.|++++|.+. .+|..++ .+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 3444444444443 4443322 2444444444444444 34444444455555555555554 34444555555555555
Q ss_pred ccccCcCCCchhhhh---------ccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceee
Q 036932 383 SNNLLSGHIPHWIGN---------FSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLY 453 (790)
Q Consensus 383 s~n~l~~~~p~~~~~---------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~ 453 (790)
++|.+.+.+|..+.. ++. |+.|++++|.++ .+|..+..+++|++|++++|.+++..+....+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~-L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVN-LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTT-CCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCC-CCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 555554455544432 555 667777766666 566667777778888888887776544433778888888
Q ss_pred ccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCc
Q 036932 454 LQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 454 L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 532 (790)
+++|++.+.+|..+..+++|+.|++++|++.+.+|.++..+++|++|++++|.+.+.+|..+.++++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888877665
No 62
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=4.2e-28 Score=279.82 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=42.0
Q ss_pred ccceEEECCCCcccccCChhhhh-ce-ecceeccCCccccccCccc-cCCCCCCEEEccCCcccccCCcc-ccCCCCCCe
Q 036932 612 KYMVGLDLSCNQLTGGIPSEIGD-LQ-IRGLNLSYNFLSGSIPGSF-SNLKWIESLDLSHNRLSGQVPPR-LTELNFLSN 687 (790)
Q Consensus 612 ~~L~~L~Ls~N~l~g~ip~~~~~-l~-L~~L~Ls~N~l~g~ip~~l-~~l~~L~~LdLs~N~lsg~ip~~-l~~l~~L~~ 687 (790)
+.|+.|++++ .+++..+..++. +. |+.|+|++|.+++..+..+ .++++|+.|+|++|.+++..+.. ...+++|++
T Consensus 432 ~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 432 KDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510 (594)
T ss_dssp TTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred CCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence 4555555544 444444444443 33 5555555555554444443 44555556666655554433332 223555555
Q ss_pred EecccCcc
Q 036932 688 FNVSFNNL 695 (790)
Q Consensus 688 L~ls~N~l 695 (790)
|++++|++
T Consensus 511 L~l~~~~~ 518 (594)
T 2p1m_B 511 LWMSSCSV 518 (594)
T ss_dssp EEEESSCC
T ss_pred EeeeCCCC
Confidence 66655555
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4e-27 Score=247.63 Aligned_cols=247 Identities=21% Similarity=0.210 Sum_probs=204.2
Q ss_pred hcccccEecccCCccccccchhhhcccccccccCcccccc-cccChhhh------hcCCcCcEEEccCCcCcccccccc-
Q 036932 276 ILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFS-GELPAPLL------TGCISLGLLDLSGNNFYGQIFPKY- 347 (790)
Q Consensus 276 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~i~~~~~------~~l~~L~~L~L~~n~l~~~~~~~~- 347 (790)
..++|+++++++|.+ .+|..+... |+.|++++|.+. +.+|.... .++++|++|++++|.+++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 457788999999988 677777654 888999999884 45665432 258899999999999998888876
Q ss_pred -cCCCCCcEEEcCCcccccccccccCCC-----CCCcEEEcccccCcCCCchhhhhccCCCeEEEccCcccccc--chhh
Q 036932 348 -MNLTQLEFLYLENNKFSGKIEEGLSNS-----NELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGN--IPAQ 419 (790)
Q Consensus 348 -~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~--~~~~ 419 (790)
..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..|..++.++. |+.|++++|++.+. .+..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA-LSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS-CCEEECCSCTTCHHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC-CCEEECCCCCcCcchHHHHH
Confidence 7899999999999999876 7766665 89999999999999887788888888 99999999998765 3445
Q ss_pred h--ccCCCCCEEecCCccccCcc--c-ccc-cccccceeeccCCcCccccc-hhhcCCCCCcEEeccCCcccccCchhhh
Q 036932 420 L--LNHGSLNLLSVSENCLSGPM--T-SSF-NLSSLEHLYLQMNSLSGPIP-IALFRSSNLITLDLRDNRFSGVIPHQIS 492 (790)
Q Consensus 420 ~--~~~~~L~~L~l~~n~l~~~~--~-~~~-~l~~L~~L~L~~n~l~~~~p-~~~~~~~~L~~L~L~~N~l~~~~p~~~~ 492 (790)
+ ..+++|++|++++|.+++.. + ..+ .+++|++|++++|++++..| ..+..+++|++|++++|+++ .+|.++.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 5 78899999999999998532 2 233 67899999999999998775 45667899999999999998 6777776
Q ss_pred cCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcc
Q 036932 493 ESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISG 533 (790)
Q Consensus 493 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g 533 (790)
++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8999999999999976 65 8899999999999999985
No 64
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=3.9e-26 Score=237.07 Aligned_cols=223 Identities=22% Similarity=0.201 Sum_probs=127.6
Q ss_pred CEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEcc
Q 036932 256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLS 335 (790)
Q Consensus 256 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~ 335 (790)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 45666666666 566543 356677777777766555556666666666666666665 3433334566666666666
Q ss_pred CCc-CcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccc
Q 036932 336 GNN-FYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG 414 (790)
Q Consensus 336 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~ 414 (790)
+|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..++. |+.|++++|.+++
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN-LTHLFLHGNRISS 167 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCCE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC-ccEEECCCCcccc
Confidence 665 55444555666666666666666666555666666666666666666666444444444444 5555555555544
Q ss_pred cchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCccc
Q 036932 415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFS 484 (790)
Q Consensus 415 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~ 484 (790)
..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 444445555555555555555555444444 4555555555555555444444555555555555555554
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.3e-25 Score=247.17 Aligned_cols=252 Identities=19% Similarity=0.187 Sum_probs=197.3
Q ss_pred CCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEc
Q 036932 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDL 334 (790)
Q Consensus 255 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L 334 (790)
.+.++.++..++ .+|..+ .+++++|++++|.+++..|..|.++++|++|++++|.+. .++...+.++++|++|+|
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEEC
Confidence 467888888887 788765 367888888888888777777888888888888888777 555555667777777777
Q ss_pred cCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccc
Q 036932 335 SGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG 414 (790)
Q Consensus 335 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~ 414 (790)
++|.++...+..|..+++|++|++++|.++...+..|..+++|+.|++++|...+.+
T Consensus 131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i----------------------- 187 (452)
T 3zyi_A 131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI----------------------- 187 (452)
T ss_dssp CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----------------------
T ss_pred CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcccc-----------------------
Confidence 777777666666667777777777777776655556666677777776664322122
Q ss_pred cchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcC
Q 036932 415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISES 494 (790)
Q Consensus 415 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l 494 (790)
.+..+..+++|++|++++|.+++. +....+++|++|++++|++++..|..|..+++|+.|++++|++++..+.++..+
T Consensus 188 -~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 188 -SEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp -CTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred -ChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 223456677788888888888764 333378899999999999998889999999999999999999999999999999
Q ss_pred ccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932 495 LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536 (790)
Q Consensus 495 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p 536 (790)
++|+.|+|++|++++..+..+..+++|+.|+|++|++.....
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 999999999999998888889999999999999999986544
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.1e-27 Score=259.82 Aligned_cols=233 Identities=21% Similarity=0.190 Sum_probs=166.9
Q ss_pred CCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeecc
Q 036932 376 ELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQ 455 (790)
Q Consensus 376 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~ 455 (790)
+|++|++++|.+++..|..+..++. |+.|++++|.+++..| +..+++|++|++++|.+++..+ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 4555555555555544455555554 5555555555554444 5666777777777777765443 2678888888
Q ss_pred CCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCcccc-CCCCCCEEEccCCcCccc
Q 036932 456 MNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLC-QLRRLGVLDLSHNRISGS 534 (790)
Q Consensus 456 ~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~l~~L~~L~Ls~N~l~g~ 534 (790)
+|.+++..+. .+++|+.|++++|++++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 8888765543 346788888888888887777888888888888888888887777775 688888888888888743
Q ss_pred CChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccc
Q 036932 535 IPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYM 614 (790)
Q Consensus 535 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 614 (790)
.+. ..++.|
T Consensus 185 ~~~-----------------------------------------------------------------------~~l~~L 193 (487)
T 3oja_A 185 KGQ-----------------------------------------------------------------------VVFAKL 193 (487)
T ss_dssp ECC-----------------------------------------------------------------------CCCTTC
T ss_pred ccc-----------------------------------------------------------------------ccCCCC
Confidence 110 124678
Q ss_pred eEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCccc-ccCCccccCCCCCCeEecc
Q 036932 615 VGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLS-GQVPPRLTELNFLSNFNVS 691 (790)
Q Consensus 615 ~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~ls-g~ip~~l~~l~~L~~L~ls 691 (790)
+.|||++|++++ +|+.++.+. |+.|+|++|.|++ +|..++.+++|+.||+++|.++ +.+|..+..++.|+.++++
T Consensus 194 ~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 194 KTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 888888888885 444576666 8888888888885 6777888888888888888887 7777888888888777776
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.8e-27 Score=249.49 Aligned_cols=255 Identities=19% Similarity=0.179 Sum_probs=149.9
Q ss_pred EEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccC
Q 036932 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSG 336 (790)
Q Consensus 257 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~ 336 (790)
..+++.+.+. ..+..++..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 14 i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 14 IEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNN 89 (317)
T ss_dssp EESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCS
T ss_pred Eeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcC
Confidence 4445555554 4444455556677777777777776666677777777777777777764333 45677777777777
Q ss_pred CcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccc
Q 036932 337 NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNI 416 (790)
Q Consensus 337 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~ 416 (790)
|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|++++..+..+..++. |+.|++++|.+++..
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVN 160 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSS-EEEEECTTSCCCEEE
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCC-CCEEECCCCCCCccc
Confidence 7765432 2367777777777776554432 456777777777776555555555555 666666666666555
Q ss_pred hhhhc-cCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCc
Q 036932 417 PAQLL-NHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESL 495 (790)
Q Consensus 417 ~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~ 495 (790)
+..+. .+++|++|++++|.+++... ...+++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..++
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 55443 45566666666666554422 1235555555555555553 3334555555555555555555 2344455555
Q ss_pred cccEEeccCcccc-ccCCccccCCCCCCEEEcc
Q 036932 496 TLRFLLLRGNYLE-GQIPNQLCQLRRLGVLDLS 527 (790)
Q Consensus 496 ~L~~L~L~~N~l~-~~~~~~l~~l~~L~~L~Ls 527 (790)
+|+.|++++|.+. +.+|.++..+++|+.++++
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 5555555555555 4445555555555555555
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.7e-25 Score=245.68 Aligned_cols=252 Identities=18% Similarity=0.192 Sum_probs=199.4
Q ss_pred CCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEc
Q 036932 255 LHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDL 334 (790)
Q Consensus 255 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L 334 (790)
.+.++.++..++ .+|..+ .++++.|++++|.+++..+..|.++++|++|+|++|.+. .++...|.++++|++|+|
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 567888888888 888766 367888888888888777778888888888888888887 666666677777888888
Q ss_pred cCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccc
Q 036932 335 SGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG 414 (790)
Q Consensus 335 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~ 414 (790)
++|.++...+..|..+++|++|++++|.++...+..|..+++|++|++++|...+.+
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i----------------------- 176 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI----------------------- 176 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE-----------------------
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee-----------------------
Confidence 888777666666777777777777777777666666777777777777764332222
Q ss_pred cchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcC
Q 036932 415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISES 494 (790)
Q Consensus 415 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l 494 (790)
.+..+..+++|++|++++|.++.. |....+++|++|+|++|++++..|..|..+++|+.|++++|++++..+.++..+
T Consensus 177 -~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 177 -SEGAFEGLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp -CTTTTTTCSSCCEEECTTSCCSSC-CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred -CcchhhcccccCeecCCCCcCccc-cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 223455666777778887777743 333378899999999999998889999999999999999999999999999999
Q ss_pred ccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932 495 LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536 (790)
Q Consensus 495 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p 536 (790)
++|+.|+|++|++++..+..+..+++|+.|+|++|++.....
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 999999999999998888889999999999999999986543
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=9.1e-25 Score=248.35 Aligned_cols=195 Identities=26% Similarity=0.285 Sum_probs=111.4
Q ss_pred cccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEE
Q 036932 302 KALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELD 381 (790)
Q Consensus 302 ~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 381 (790)
.+++.|++++|.++ .+|..+. ++|++|++++|.++. +|. .+++|++|++++|++++ +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 35778888888887 7776543 678888888887774 333 46777888888887763 443 467777777
Q ss_pred cccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCcc
Q 036932 382 ISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSG 461 (790)
Q Consensus 382 Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~ 461 (790)
+++|++++ +|. .... |+.|++++|.+++ +|.. +++|++|++++|.+++... .+++|+.|++++|.+++
T Consensus 108 Ls~N~l~~-l~~---~l~~-L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSG-LCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCC-CCC---CCTT-CCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCC-CCC---CCCC-cCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC
Confidence 77777773 333 2223 6666666666653 3332 2556666666665554322 13455555555555553
Q ss_pred ccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCc
Q 036932 462 PIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 462 ~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 532 (790)
+| ..+++|+.|++++|++++ +|.. .++|+.|++++|.++ .+|.. +++|+.|++++|+++
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLT 234 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS
T ss_pred -Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccC
Confidence 33 234555555555555553 2221 244555555555555 22221 245555555555554
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4.2e-27 Score=271.45 Aligned_cols=439 Identities=16% Similarity=0.089 Sum_probs=286.2
Q ss_pred eEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcC---c-----------hhHhhCCCCCcEEeccCCcccccccCCC
Q 036932 184 KVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDF---P-----------TWVLRNNTKLEALFLTNNSFTGNLQLPK 249 (790)
Q Consensus 184 ~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~i---p-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 249 (790)
..+++..+.....+..+..+++|+.|+++++.....+ | ..+...+++|++|++++|.+++.....+
T Consensus 46 ~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l 125 (594)
T 2p1m_B 46 RKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125 (594)
T ss_dssp CEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred eEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence 3555555544333445667888999999987532111 1 1234467888889888887765432223
Q ss_pred C-CCCCCCEEEeecC-CCCccCChhHHhhcccccEecccCCccccccchhhh----cccccccccCcccc--cccccChh
Q 036932 250 T-KHDFLHHLDVSNN-NLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIG----EMKALIFLRLPKNN--FSGELPAP 321 (790)
Q Consensus 250 ~-~~~~L~~L~Ls~n-~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~----~l~~L~~L~Ls~n~--l~~~i~~~ 321 (790)
. .+++|++|++++| .+++.....+...+++|++|++++|.+++..+.++. .+++|++|++++|. +.......
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 2 4778888888888 454222233444578888888888887765555554 45688888888886 22111122
Q ss_pred hhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCc-------ccccccccccCCCCCCcEE-EcccccCcCCCch
Q 036932 322 LLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENN-------KFSGKIEEGLSNSNELNEL-DISNNLLSGHIPH 393 (790)
Q Consensus 322 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-------~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~p~ 393 (790)
+...+++|++|++++|...+.++..+..+++|++|++..+ .+.+ ++..+..+++|+.+ .+.+... +.++.
T Consensus 206 l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~ 283 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPA 283 (594)
T ss_dssp HHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGG
T ss_pred HHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHH
Confidence 3345788888888888333336666777888888885544 3332 33466778888888 3443322 24555
Q ss_pred hhhhccCCCeEEEccCccccccch-hhhccCCCCCEEecCCccccCcccccc--cccccceeecc---------CCcCcc
Q 036932 394 WIGNFSSDLKVLLMSKMFLKGNIP-AQLLNHGSLNLLSVSENCLSGPMTSSF--NLSSLEHLYLQ---------MNSLSG 461 (790)
Q Consensus 394 ~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~L~---------~n~l~~ 461 (790)
.+..++. |+.|++++|.+++... ..+..+++|+.|++++| +++.....+ .+++|++|++. .+.+++
T Consensus 284 ~~~~~~~-L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 284 VYSVCSR-LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GHHHHTT-CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHhhCC-CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 5556666 8888888888765433 33557888888888887 432222222 57888888883 345554
Q ss_pred ccchhhc-CCCCCcEEeccCCcccccCchhhh-cCccccEEecc--C----cccccc-----CCccccCCCCCCEEEccC
Q 036932 462 PIPIALF-RSSNLITLDLRDNRFSGVIPHQIS-ESLTLRFLLLR--G----NYLEGQ-----IPNQLCQLRRLGVLDLSH 528 (790)
Q Consensus 462 ~~p~~~~-~~~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~--~----N~l~~~-----~~~~l~~l~~L~~L~Ls~ 528 (790)
.....+. .+++|+.|+++.|++++..+..+. .+++|+.|+++ + +.+++. ++..+..+++|+.|++++
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~ 441 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG 441 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC
Confidence 3333333 478888888888888766555554 57888888888 4 455521 222356678888888876
Q ss_pred CcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccC
Q 036932 529 NRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNG 608 (790)
Q Consensus 529 N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (790)
.+++..+..++.
T Consensus 442 -~l~~~~~~~l~~------------------------------------------------------------------- 453 (594)
T 2p1m_B 442 -LLTDKVFEYIGT------------------------------------------------------------------- 453 (594)
T ss_dssp -SCCHHHHHHHHH-------------------------------------------------------------------
T ss_pred -cccHHHHHHHHH-------------------------------------------------------------------
Confidence 555332222211
Q ss_pred cccccceEEECCCCcccccCChhh-hhce-ecceeccCCccccccCc-cccCCCCCCEEEccCCcccccCCccc-cCCCC
Q 036932 609 SNIKYMVGLDLSCNQLTGGIPSEI-GDLQ-IRGLNLSYNFLSGSIPG-SFSNLKWIESLDLSHNRLSGQVPPRL-TELNF 684 (790)
Q Consensus 609 ~~l~~L~~L~Ls~N~l~g~ip~~~-~~l~-L~~L~Ls~N~l~g~ip~-~l~~l~~L~~LdLs~N~lsg~ip~~l-~~l~~ 684 (790)
.++.|+.|+|++|.+++..+..+ ..+. |+.|+|++|.+++..+. .+..+++|+.|++++|+++......+ ..++.
T Consensus 454 -~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~ 532 (594)
T 2p1m_B 454 -YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPK 532 (594)
T ss_dssp -HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTT
T ss_pred -hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCC
Confidence 15689999999999987766666 5565 99999999999876655 34558999999999999976655555 45677
Q ss_pred CCeEecccCcc
Q 036932 685 LSNFNVSFNNL 695 (790)
Q Consensus 685 L~~L~ls~N~l 695 (790)
|+...+..+.-
T Consensus 533 l~i~~~~~~~~ 543 (594)
T 2p1m_B 533 LNVEVIDERGA 543 (594)
T ss_dssp EEEEEECSSSC
T ss_pred CEEEEecCCCc
Confidence 76666655543
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1e-24 Score=225.19 Aligned_cols=208 Identities=24% Similarity=0.222 Sum_probs=162.2
Q ss_pred CCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEecc
Q 036932 425 SLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLR 503 (790)
Q Consensus 425 ~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 503 (790)
++++|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 57777777777776666555 67777777777777776556677778888888888888887777778888888888888
Q ss_pred CccccccCCccccCCCCCCEEEccCCcCcc-cCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccC
Q 036932 504 GNYLEGQIPNQLCQLRRLGVLDLSHNRISG-SIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYG 582 (790)
Q Consensus 504 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 582 (790)
+|.+++..+..+..+++|+.|++++|++++ .+|..+..
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~----------------------------------------- 147 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----------------------------------------- 147 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence 888877666677888888888888888874 24554322
Q ss_pred CCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ec----ceeccCCccccccCccccC
Q 036932 583 NGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IR----GLNLSYNFLSGSIPGSFSN 657 (790)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~----~L~Ls~N~l~g~ip~~l~~ 657 (790)
++.|+.|++++|++++..+..+..+. ++ .|++++|++++..+..+..
T Consensus 148 ----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~ 199 (276)
T 2z62_A 148 ----------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199 (276)
T ss_dssp ----------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS
T ss_pred ----------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC
Confidence 45788888888888877667776665 55 7899999999766665554
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCC
Q 036932 658 LKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK 702 (790)
Q Consensus 658 l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 702 (790)
.+|+.|||++|+|++..+..+..+++|++|++++|+++|.+|.-
T Consensus 200 -~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 200 -IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp -CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred -CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 58999999999999888878899999999999999999998854
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=3.7e-24 Score=243.32 Aligned_cols=267 Identities=27% Similarity=0.262 Sum_probs=164.2
Q ss_pred cceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEee
Q 036932 182 QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVS 261 (790)
Q Consensus 182 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 261 (790)
+++.|++++|.++.+|..+. ++|+.|++++|.++ .+|. .+++|++|++++|.+++.. . .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp---~-~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLP---V-LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCC---C-CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCC---C-CCCCCCEEECc
Confidence 35666667777777766554 57777777777776 5664 4567777777777766532 2 55677777777
Q ss_pred cCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcc
Q 036932 262 NNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYG 341 (790)
Q Consensus 262 ~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~ 341 (790)
+|.++ .+|. .+++|+.|++++|.+++ +|.. +++|++|++++|+++ .+|. .+++|+.|++++|.+++
T Consensus 110 ~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 110 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp SCCCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC
T ss_pred CCcCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCC
Confidence 77776 4554 25667777777777763 4432 366777777777766 4543 34567777777777765
Q ss_pred cccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhc
Q 036932 342 QIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL 421 (790)
Q Consensus 342 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 421 (790)
. | ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|..+ +. |+.|++++|.+++ +| .
T Consensus 176 l-~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~---~~-L~~L~Ls~N~L~~-lp---~ 238 (622)
T 3g06_A 176 L-P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---SG-LKELIVSGNRLTS-LP---V 238 (622)
T ss_dssp C-C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC---TT-CCEEECCSSCCSC-CC---C
T ss_pred C-c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC---CC-CCEEEccCCccCc-CC---C
Confidence 2 2 345667777777777664 3322 356777777777666 344321 22 6666666666654 33 3
Q ss_pred cCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcC
Q 036932 422 NHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISES 494 (790)
Q Consensus 422 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l 494 (790)
.+++|+.|++++|.++...+ .+++|++|++++|+++ .+|..+..+++|+.|+|++|++++..|..+..+
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 34566666666666664332 3456666666666666 556666666666666666666666655555443
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.4e-25 Score=246.17 Aligned_cols=234 Identities=20% Similarity=0.186 Sum_probs=135.4
Q ss_pred ccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEE
Q 036932 278 QKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLY 357 (790)
Q Consensus 278 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 357 (790)
++|++|++++|.+++..|..++.+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 367777777777776666677777777777777777764443 4566777777777776664322 26677777
Q ss_pred cCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhc-cCCCCCEEecCCccc
Q 036932 358 LENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL-NHGSLNLLSVSENCL 436 (790)
Q Consensus 358 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l 436 (790)
+++|.+++..+. .+++|+.|++++|.+++..|..+..++. |+.|++++|.+++..|..+. .+++|++|++++|.+
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSS-EEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCC-CCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 777776655443 2456666666666666655656665555 66666666666655555554 455666666666665
Q ss_pred cCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCcccc-ccCCccc
Q 036932 437 SGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLE-GQIPNQL 515 (790)
Q Consensus 437 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~~~~l 515 (790)
++..+. ..+++|++|+|++|.+++ +|..+..+++|+.|++++|++++ +|.++..+++|+.|++++|.+. +.+|.++
T Consensus 182 ~~~~~~-~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 182 YDVKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp CEEECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccccc-ccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 544221 135555555555555553 33335555555555555555553 3444455555555555555554 3444444
Q ss_pred cCCCCCCEEEc
Q 036932 516 CQLRRLGVLDL 526 (790)
Q Consensus 516 ~~l~~L~~L~L 526 (790)
..++.|+.+++
T Consensus 259 ~~l~~L~~l~~ 269 (487)
T 3oja_A 259 SKNQRVQTVAK 269 (487)
T ss_dssp TTCHHHHHHHH
T ss_pred HhCCCCcEEec
Confidence 44444444444
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=4.3e-23 Score=212.04 Aligned_cols=206 Identities=23% Similarity=0.231 Sum_probs=166.4
Q ss_pred CCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccC
Q 036932 425 SLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRG 504 (790)
Q Consensus 425 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 504 (790)
..+.++++++.++..+.. + .+++++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-I-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-C-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCC-C-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 466777777777753322 2 25688888888888866666788888888888888888866666678888888888888
Q ss_pred ccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCC
Q 036932 505 NYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNG 584 (790)
Q Consensus 505 N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 584 (790)
|++++..+..+..+++|+.|++++|++++..|..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------------------------------- 129 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--------------------------------------------- 129 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT---------------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh---------------------------------------------
Confidence 88887777778888889999999888875444322
Q ss_pred cccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCE
Q 036932 585 VYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIES 663 (790)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~ 663 (790)
..++.|+.|+|++|++++..+..++.+. |+.|+|++|++++..|..|+++++|+.
T Consensus 130 ------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 185 (270)
T 2o6q_A 130 ------------------------DSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185 (270)
T ss_dssp ------------------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred ------------------------CcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence 1256788899999998865555677776 999999999999888888999999999
Q ss_pred EEccCCcccccCCccccCCCCCCeEecccCcceecCCC
Q 036932 664 LDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPD 701 (790)
Q Consensus 664 LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 701 (790)
|||++|+|++..+..+..+++|+.|++++|++.+.++.
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 99999999988888899999999999999999988763
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=5.4e-23 Score=212.22 Aligned_cols=222 Identities=19% Similarity=0.251 Sum_probs=132.4
Q ss_pred EEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccC
Q 036932 257 HLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSG 336 (790)
Q Consensus 257 ~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~ 336 (790)
..+..+..+. .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++. .++...+..+++|++|++++
T Consensus 11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence 3444455555 566544 246777777777777655556777777777777777776 55555556667777777777
Q ss_pred CcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCC-CchhhhhccCCCeEEEccCcccccc
Q 036932 337 NNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGH-IPHWIGNFSSDLKVLLMSKMFLKGN 415 (790)
Q Consensus 337 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~~~~~L~~L~l~~n~l~~~ 415 (790)
|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++. +|..+..++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~---------------- 149 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT---------------- 149 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT----------------
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCC----------------
Confidence 777666666666677777777777776655555566666677777766666542 344444444
Q ss_pred chhhhccCCCCCEEecCCccccCcccccc-cccccc----eeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchh
Q 036932 416 IPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLE----HLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQ 490 (790)
Q Consensus 416 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~----~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~ 490 (790)
+|++|++++|.+++..+..+ .+++|+ .|++++|.+++. +.......+|+.|++++|++++..+..
T Consensus 150 ---------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~ 219 (276)
T 2z62_A 150 ---------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLKELALDTNQLKSVPDGI 219 (276)
T ss_dssp ---------TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE-CTTSSCSCCEEEEECCSSCCSCCCTTT
T ss_pred ---------CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc-CccccCCCcccEEECCCCceeecCHhH
Confidence 44444444444444433333 333333 556666666533 223333345666666666666555555
Q ss_pred hhcCccccEEeccCccccc
Q 036932 491 ISESLTLRFLLLRGNYLEG 509 (790)
Q Consensus 491 ~~~l~~L~~L~L~~N~l~~ 509 (790)
+..+++|+.|++++|.+++
T Consensus 220 ~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 220 FDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TTTCCSCCEEECCSSCBCC
T ss_pred hcccccccEEEccCCcccc
Confidence 5666666666666666653
No 76
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=3.9e-24 Score=229.82 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=16.6
Q ss_pred ccccCCCCCCEEEccCCcccccCCccc
Q 036932 653 GSFSNLKWIESLDLSHNRLSGQVPPRL 679 (790)
Q Consensus 653 ~~l~~l~~L~~LdLs~N~lsg~ip~~l 679 (790)
..+.++++|+.||+++|++.+..|..+
T Consensus 278 ~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp TTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred HHhccCCceEEEecCCCcCCCcchHHH
Confidence 345566667777777777766544443
No 77
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=4.8e-24 Score=229.14 Aligned_cols=259 Identities=22% Similarity=0.180 Sum_probs=164.2
Q ss_pred EEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCC-CCCEEecCCc
Q 036932 356 LYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHG-SLNLLSVSEN 434 (790)
Q Consensus 356 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~L~l~~n 434 (790)
++++.|.+++.+|..+...++|++|++++|.+++..+..+. ..+..++ +|++|++++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~---------------------~~l~~~~~~L~~L~Ls~N 61 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELI---------------------QAFANTPASVTSLNLSGN 61 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH---------------------HHHHTCCTTCCEEECCSS
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHH---------------------HHHHhCCCceeEEECcCC
Confidence 45666666666665555555566666666666544441111 3344444 5555555555
Q ss_pred cccCcccccc-cc-----cccceeeccCCcCccccchh----hcCC-CCCcEEeccCCcccccCchhhhc-----Ccccc
Q 036932 435 CLSGPMTSSF-NL-----SSLEHLYLQMNSLSGPIPIA----LFRS-SNLITLDLRDNRFSGVIPHQISE-----SLTLR 498 (790)
Q Consensus 435 ~l~~~~~~~~-~l-----~~L~~L~L~~n~l~~~~p~~----~~~~-~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~ 498 (790)
.+++..+..+ .+ ++|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+.. .++|+
T Consensus 62 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 62 SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 5555444433 22 56666666666666544443 3333 67777777777777665554432 25777
Q ss_pred EEeccCccccccC----CccccCCC-CCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccccccccc
Q 036932 499 FLLLRGNYLEGQI----PNQLCQLR-RLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYN 573 (790)
Q Consensus 499 ~L~L~~N~l~~~~----~~~l~~l~-~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 573 (790)
+|++++|.+++.. +..+..++ +|+.|+|++|++++..+..++...
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------ 191 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------ 191 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH------------------------------
T ss_pred EEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH------------------------------
Confidence 7777777777433 33344554 888888888888766665554321
Q ss_pred ccccccccCCCcccccCcceEEEEeeccceecccCccc-ccceEEECCCCccccc----CChhhhhc--eecceeccCCc
Q 036932 574 STFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNI-KYMVGLDLSCNQLTGG----IPSEIGDL--QIRGLNLSYNF 646 (790)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~g~----ip~~~~~l--~L~~L~Ls~N~ 646 (790)
... +.|+.|||++|.+++. ++..+... .|+.|||++|.
T Consensus 192 -----------------------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 192 -----------------------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp -----------------------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred -----------------------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 112 3788888888888753 44555543 28888899888
Q ss_pred cccccC----ccccCCCCCCEEEccCCccccc-------CCccccCCCCCCeEecccCcceecCC
Q 036932 647 LSGSIP----GSFSNLKWIESLDLSHNRLSGQ-------VPPRLTELNFLSNFNVSFNNLSGLIP 700 (790)
Q Consensus 647 l~g~ip----~~l~~l~~L~~LdLs~N~lsg~-------ip~~l~~l~~L~~L~ls~N~l~g~iP 700 (790)
+++..+ ..+..+++|+.|+|++|.+++. ++..+..++.|+.||+++|++.+..|
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 887655 3457789999999999995543 34567788999999999999987633
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=1.4e-22 Score=209.90 Aligned_cols=205 Identities=21% Similarity=0.148 Sum_probs=172.1
Q ss_pred hccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccE
Q 036932 420 LLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRF 499 (790)
Q Consensus 420 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 499 (790)
+.++++++.+++++|.++..++.. .++++.|++++|.+++..+..+..+++|+.|++++|++++..+. ..+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 456678888999988888655443 26789999999999887788899999999999999999865433 78889999
Q ss_pred EeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccccccccccccccccccccc
Q 036932 500 LLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFG 579 (790)
Q Consensus 500 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 579 (790)
|++++|+++ .+|..+..+++|+.|++++|++++..|..+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~---------------------------------------- 120 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL---------------------------------------- 120 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT----------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH----------------------------------------
Confidence 999999998 678888899999999999999985444333
Q ss_pred ccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCC
Q 036932 580 HYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNL 658 (790)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l 658 (790)
..++.|+.|+|++|++++..+..+..+. |+.|+|++|+|++..+..|.++
T Consensus 121 -----------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 171 (290)
T 1p9a_G 121 -----------------------------RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171 (290)
T ss_dssp -----------------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTC
T ss_pred -----------------------------cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCc
Confidence 2256899999999999976666677776 9999999999997777778999
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecC
Q 036932 659 KWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLI 699 (790)
Q Consensus 659 ~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~i 699 (790)
++|+.|+|++|+|+ .+|..+..+..|+.++|++|++.|.+
T Consensus 172 ~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 99999999999999 78888889999999999999998865
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=8.8e-23 Score=209.90 Aligned_cols=226 Identities=17% Similarity=0.206 Sum_probs=134.4
Q ss_pred ccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEE
Q 036932 278 QKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLY 357 (790)
Q Consensus 278 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 357 (790)
.++..+++..+.+.+.. ....+++|+.|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|+
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence 34444555555544322 2344555555555555554 3332 23455555555555555432 2444555555555
Q ss_pred cCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCcccc
Q 036932 358 LENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLS 437 (790)
Q Consensus 358 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 437 (790)
+++|.+++..+..+..+++|++|++++|+++ +..+..+..+++|++|++++|.++
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~n~l~ 146 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-------------------------SLPDGVFDKLTNLTYLNLAHNQLQ 146 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------------------CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCC-------------------------ccCHHHhccCCCCCEEECCCCccC
Confidence 5555555444444445555555555555544 444444555566666666666666
Q ss_pred Ccccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCcccc
Q 036932 438 GPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLC 516 (790)
Q Consensus 438 ~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 516 (790)
+..+..+ .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 147 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------- 219 (272)
T 3rfs_A 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------- 219 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------
T ss_pred ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------
Confidence 6655555 66777777777777776555566777777777777777777666667777777777777777653
Q ss_pred CCCCCCEEEccCCcCcccCChhHHHH
Q 036932 517 QLRRLGVLDLSHNRISGSIPSCLTIM 542 (790)
Q Consensus 517 ~l~~L~~L~Ls~N~l~g~~p~~~~~~ 542 (790)
.+++|+.++++.|+++|.+|.+++.+
T Consensus 220 ~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 220 TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cCcHHHHHHHHHHhCCCcccCccccc
Confidence 35567777777777777777766543
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=6.3e-23 Score=210.98 Aligned_cols=205 Identities=20% Similarity=0.181 Sum_probs=155.3
Q ss_pred ccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEE
Q 036932 301 MKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNEL 380 (790)
Q Consensus 301 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 380 (790)
+.++..+++..+.+.+.... ..+++|+.|++++|.+... ..+..+++|++|++++|.+++. ..+..+++|++|
T Consensus 18 ~~~l~~l~l~~~~~~~~~~~---~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 90 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHHTCSCTTSEECH---HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEE
T ss_pred HHHHHHHHhcCccccccccc---ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEE
Confidence 34455666666666533332 3456666666666666432 2345555666666665555432 234445555555
Q ss_pred EcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcC
Q 036932 381 DISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSL 459 (790)
Q Consensus 381 ~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l 459 (790)
++++| .+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|++
T Consensus 91 ~L~~n-------------------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 91 ILTGN-------------------------QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL 145 (272)
T ss_dssp ECTTS-------------------------CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCC-------------------------ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc
Confidence 55555 4444445556677889999999999999888877 899999999999999
Q ss_pred ccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCCh
Q 036932 460 SGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPS 537 (790)
Q Consensus 460 ~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~ 537 (790)
++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|..|.
T Consensus 146 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 977777789999999999999999988888889999999999999999998888899999999999999999998884
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=5.9e-24 Score=230.83 Aligned_cols=217 Identities=19% Similarity=0.217 Sum_probs=140.7
Q ss_pred hccCCCCCEEecCCcc---ccCcccccc--------cccccceeeccCCcCcc----ccchhhcCCCCCcEEeccCCccc
Q 036932 420 LLNHGSLNLLSVSENC---LSGPMTSSF--------NLSSLEHLYLQMNSLSG----PIPIALFRSSNLITLDLRDNRFS 484 (790)
Q Consensus 420 ~~~~~~L~~L~l~~n~---l~~~~~~~~--------~l~~L~~L~L~~n~l~~----~~p~~~~~~~~L~~L~L~~N~l~ 484 (790)
+..+++|++|++++|. +++.+|..+ .+++|++|+|++|.+++ .+|..+..+++|++|+|++|+++
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 3445556666665542 223323211 45667777777777765 35666777777777777777776
Q ss_pred ccCchhhh----cC---------ccccEEeccCcccc-ccCC---ccccCCCCCCEEEccCCcCcccCChhHHHHHHhhc
Q 036932 485 GVIPHQIS----ES---------LTLRFLLLRGNYLE-GQIP---NQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVA 547 (790)
Q Consensus 485 ~~~p~~~~----~l---------~~L~~L~L~~N~l~-~~~~---~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~ 547 (790)
+..+..+. .+ ++|++|++++|+++ +.++ ..+..+++|+.|++++|+++.. .+..+..
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~---g~~~l~~--- 209 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE---GIEHLLL--- 209 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH---HHHHHHH---
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHh---HHHHHHH---
Confidence 44333333 33 67777777777776 3334 3556677888888888877611 0000000
Q ss_pred ccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCccc--
Q 036932 548 GNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLT-- 625 (790)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-- 625 (790)
.. ...++.|+.|+|++|.++
T Consensus 210 ------------------------------------~~----------------------l~~~~~L~~L~Ls~n~l~~~ 231 (386)
T 2ca6_A 210 ------------------------------------EG----------------------LAYCQELKVLDLQDNTFTHL 231 (386)
T ss_dssp ------------------------------------TT----------------------GGGCTTCCEEECCSSCCHHH
T ss_pred ------------------------------------HH----------------------hhcCCCccEEECcCCCCCcH
Confidence 00 012467788888888876
Q ss_pred --ccCChhhhhce-ecceeccCCccccc----cCccc--cCCCCCCEEEccCCcccc----cCCccc-cCCCCCCeEecc
Q 036932 626 --GGIPSEIGDLQ-IRGLNLSYNFLSGS----IPGSF--SNLKWIESLDLSHNRLSG----QVPPRL-TELNFLSNFNVS 691 (790)
Q Consensus 626 --g~ip~~~~~l~-L~~L~Ls~N~l~g~----ip~~l--~~l~~L~~LdLs~N~lsg----~ip~~l-~~l~~L~~L~ls 691 (790)
+.+|..+..+. |+.|+|++|.+++. +|..+ +.+++|+.|+|++|++++ .+|..+ ..+++|++|+++
T Consensus 232 g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~ 311 (386)
T 2ca6_A 232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN 311 (386)
T ss_dssp HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence 56777777766 88888888888876 56666 348888899999998888 588777 568888899999
Q ss_pred cCcceecCC
Q 036932 692 FNNLSGLIP 700 (790)
Q Consensus 692 ~N~l~g~iP 700 (790)
+|++++..|
T Consensus 312 ~N~l~~~~~ 320 (386)
T 2ca6_A 312 GNRFSEEDD 320 (386)
T ss_dssp TSBSCTTSH
T ss_pred CCcCCcchh
Confidence 998887654
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=8.1e-23 Score=214.62 Aligned_cols=203 Identities=21% Similarity=0.197 Sum_probs=151.2
Q ss_pred CCCCEEecCCccccCccccc---ccccccceeeccCCcCccccc----hhhcCCCCCcEEeccCCcccccCchhhhcCcc
Q 036932 424 GSLNLLSVSENCLSGPMTSS---FNLSSLEHLYLQMNSLSGPIP----IALFRSSNLITLDLRDNRFSGVIPHQISESLT 496 (790)
Q Consensus 424 ~~L~~L~l~~n~l~~~~~~~---~~l~~L~~L~L~~n~l~~~~p----~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~ 496 (790)
++|++|++++|.+++..+.. ..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 45777777777777666655 256777788888887776444 34456788888888888888777788888888
Q ss_pred ccEEeccCcccccc--C--CccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccc
Q 036932 497 LRFLLLRGNYLEGQ--I--PNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYY 572 (790)
Q Consensus 497 L~~L~L~~N~l~~~--~--~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 572 (790)
|++|++++|++.+. + +..+..+++|++|++++|+++ .+|.....+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~----------------------------- 220 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA----------------------------- 220 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH-----------------------------
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH-----------------------------
Confidence 88888888887642 2 233467888999999999886 3332211100
Q ss_pred cccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhc----eecceeccCCccc
Q 036932 573 NSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDL----QIRGLNLSYNFLS 648 (790)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l----~L~~L~Ls~N~l~ 648 (790)
..++.|+.|||++|++++.+|..++.+ .|+.|+|++|+|+
T Consensus 221 ------------------------------------~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 221 ------------------------------------AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp ------------------------------------HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred ------------------------------------hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 124678899999999998888888776 3999999999999
Q ss_pred cccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCccee
Q 036932 649 GSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSG 697 (790)
Q Consensus 649 g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g 697 (790)
.+|..+. ++|+.|||++|+|++. |. +..++.|+.|++++|+++.
T Consensus 265 -~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 265 -QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp -SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred -chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 7787775 7999999999999974 33 6778899999999998863
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.9e-22 Score=204.88 Aligned_cols=211 Identities=20% Similarity=0.227 Sum_probs=149.3
Q ss_pred ccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEcc
Q 036932 448 SLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLS 527 (790)
Q Consensus 448 ~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 527 (790)
..++++++++.++ .+|..+. ++++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4566677777766 4555443 467777777777777777777777777777777777777777777777888888888
Q ss_pred CCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceeccc
Q 036932 528 HNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYN 607 (790)
Q Consensus 528 ~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (790)
+|++++..|..+
T Consensus 92 ~n~l~~~~~~~~-------------------------------------------------------------------- 103 (251)
T 3m19_A 92 NNQLASLPLGVF-------------------------------------------------------------------- 103 (251)
T ss_dssp TSCCCCCCTTTT--------------------------------------------------------------------
T ss_pred CCcccccChhHh--------------------------------------------------------------------
Confidence 887774333222
Q ss_pred CcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 036932 608 GSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLS 686 (790)
Q Consensus 608 ~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~ 686 (790)
..++.|+.|+|++|++++..+..++.+. |+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..+..+++|+
T Consensus 104 -~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 104 -DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp -TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred -cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 1245778888888888755555566676 99999999999987777899999999999999999998888999999999
Q ss_pred eEecccCcceecCCCCCcCCCc-C-----cccccCCcCCCCCCCCCCCCCC
Q 036932 687 NFNVSFNNLSGLIPDKGQFATF-D-----ESSYRGNLHLCGPTINKSCNST 731 (790)
Q Consensus 687 ~L~ls~N~l~g~iP~~~~~~~~-~-----~~~~~gn~~lcg~~~~~~c~~~ 731 (790)
+|++++|+++|..+.-..+..+ . .....|+ .+|+.+....|..+
T Consensus 183 ~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~ 232 (251)
T 3m19_A 183 TITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDG 232 (251)
T ss_dssp EEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred EEEeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCC
Confidence 9999999999875432111111 0 1112233 36777767778655
No 84
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.1e-21 Score=199.49 Aligned_cols=204 Identities=21% Similarity=0.208 Sum_probs=144.4
Q ss_pred cccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcc
Q 036932 304 LIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDIS 383 (790)
Q Consensus 304 L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 383 (790)
.+.++++++.++ .+|..+ .+++++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 455666666665 555432 1345566666665555444455555555555555555554444444555555555555
Q ss_pred cccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccc
Q 036932 384 NNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGP 462 (790)
Q Consensus 384 ~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~ 462 (790)
+|+++ +..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|.+++.
T Consensus 94 ~n~l~-------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 94 DNKLQ-------------------------ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp SSCCC-------------------------CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCcCC-------------------------cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 55554 3344445566677788888888877777766 788888888888888866
Q ss_pred cchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932 463 IPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536 (790)
Q Consensus 463 ~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p 536 (790)
.+..+..+++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 66668888999999999999998777788889999999999999997777778899999999999999987654
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=3.2e-23 Score=225.05 Aligned_cols=242 Identities=21% Similarity=0.224 Sum_probs=167.9
Q ss_pred cchhhhcccccccccCcccccccccChh---hhhcCCcCcEEEccCCc---Cccccccc-------ccCCCCCcEEEcCC
Q 036932 294 LPSSIGEMKALIFLRLPKNNFSGELPAP---LLTGCISLGLLDLSGNN---FYGQIFPK-------YMNLTQLEFLYLEN 360 (790)
Q Consensus 294 ~p~~l~~l~~L~~L~Ls~n~l~~~i~~~---~~~~l~~L~~L~L~~n~---l~~~~~~~-------~~~l~~L~~L~L~~ 360 (790)
++..+..+++|++|++++|.+.+..+.. .+..+++|++|+|++|. +.+.+|.. +..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3344444455555555555444322211 12345555555555532 22333332 25667777777777
Q ss_pred ccccc----ccccccCCCCCCcEEEcccccCcCCCchhhhh----c---------cCCCeEEEccCcccc-ccch---hh
Q 036932 361 NKFSG----KIEEGLSNSNELNELDISNNLLSGHIPHWIGN----F---------SSDLKVLLMSKMFLK-GNIP---AQ 419 (790)
Q Consensus 361 n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~----~---------~~~L~~L~l~~n~l~-~~~~---~~ 419 (790)
|.++. .++..+..+++|++|++++|.+++..+..+.. + +. |+.|++++|.++ +.++ ..
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP-LRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC-CCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC-CcEEECCCCCCCcHHHHHHHHH
Confidence 77765 35556667777777777777775433333333 2 45 888888888876 3444 46
Q ss_pred hccCCCCCEEecCCccccC-----cccccc-cccccceeeccCCcCc----cccchhhcCCCCCcEEeccCCccccc---
Q 036932 420 LLNHGSLNLLSVSENCLSG-----PMTSSF-NLSSLEHLYLQMNSLS----GPIPIALFRSSNLITLDLRDNRFSGV--- 486 (790)
Q Consensus 420 ~~~~~~L~~L~l~~n~l~~-----~~~~~~-~l~~L~~L~L~~n~l~----~~~p~~~~~~~~L~~L~L~~N~l~~~--- 486 (790)
+..+++|++|++++|.++. ..+..+ .+++|++|+|++|.++ +.+|..+..+++|+.|+|++|++++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 7788899999999999873 334244 7899999999999996 56888999999999999999999876
Q ss_pred -Cchhhhc--CccccEEeccCccccc----cCCccc-cCCCCCCEEEccCCcCcccCC
Q 036932 487 -IPHQISE--SLTLRFLLLRGNYLEG----QIPNQL-CQLRRLGVLDLSHNRISGSIP 536 (790)
Q Consensus 487 -~p~~~~~--l~~L~~L~L~~N~l~~----~~~~~l-~~l~~L~~L~Ls~N~l~g~~p 536 (790)
++.++.. +++|+.|+|++|.+++ .+|..+ .++++|+.|++++|++++..|
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 5666644 8999999999999998 477777 668999999999999997765
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=1.2e-22 Score=216.30 Aligned_cols=227 Identities=18% Similarity=0.233 Sum_probs=148.3
Q ss_pred CeEEEccCccccccchhhhccCCCCCEEecCCccccCc-ccccc-cccccceeeccCCcCccccchhhcCCCCCcEEecc
Q 036932 402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGP-MTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLR 479 (790)
Q Consensus 402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~ 479 (790)
++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+ .+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 72 l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 44455555444443333 33455666666666666544 44444 56677777777777776667777777777777777
Q ss_pred CC-ccccc-CchhhhcCccccEEeccCc-ccccc-CCccccCCC-CCCEEEccCC--cCc-ccCChhHHHHHHhhccccc
Q 036932 480 DN-RFSGV-IPHQISESLTLRFLLLRGN-YLEGQ-IPNQLCQLR-RLGVLDLSHN--RIS-GSIPSCLTIMLLWVAGNVY 551 (790)
Q Consensus 480 ~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~l~~l~-~L~~L~Ls~N--~l~-g~~p~~~~~~~~~~~~~~~ 551 (790)
+| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++| .++ +.+|..+.
T Consensus 151 ~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~----------- 219 (336)
T 2ast_B 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR----------- 219 (336)
T ss_dssp TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-----------
T ss_pred CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-----------
Confidence 77 56642 5555677777777777777 77654 466667777 8888888887 343 22232221
Q ss_pred CCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCc-ccccCCh
Q 036932 552 LHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQ-LTGGIPS 630 (790)
Q Consensus 552 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~g~ip~ 630 (790)
.++.|+.|++++|. +++..+.
T Consensus 220 ----------------------------------------------------------~~~~L~~L~l~~~~~l~~~~~~ 241 (336)
T 2ast_B 220 ----------------------------------------------------------RCPNLVHLDLSDSVMLKNDCFQ 241 (336)
T ss_dssp ----------------------------------------------------------HCTTCSEEECTTCTTCCGGGGG
T ss_pred ----------------------------------------------------------hCCCCCEEeCCCCCcCCHHHHH
Confidence 24678888888888 6767777
Q ss_pred hhhhce-ecceeccCCc-cccccCccccCCCCCCEEEccCCcccccCCccccCC-CCCCeEecccCcceecCCCC
Q 036932 631 EIGDLQ-IRGLNLSYNF-LSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEL-NFLSNFNVSFNNLSGLIPDK 702 (790)
Q Consensus 631 ~~~~l~-L~~L~Ls~N~-l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l-~~L~~L~ls~N~l~g~iP~~ 702 (790)
.++.+. |+.|++++|. ++......++++++|+.|++++| ++. ..+..+ ..+..|++++|+++|..|..
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 777776 8888888885 33333336788899999999988 332 233444 24777788999999888753
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=3.6e-22 Score=209.63 Aligned_cols=221 Identities=22% Similarity=0.214 Sum_probs=174.5
Q ss_pred CCCEEecCCccccCccc----ccccccccceeeccCCcCccccchhh--cCCCCCcEEeccCCcccccCc----hhhhcC
Q 036932 425 SLNLLSVSENCLSGPMT----SSFNLSSLEHLYLQMNSLSGPIPIAL--FRSSNLITLDLRDNRFSGVIP----HQISES 494 (790)
Q Consensus 425 ~L~~L~l~~n~l~~~~~----~~~~l~~L~~L~L~~n~l~~~~p~~~--~~~~~L~~L~L~~N~l~~~~p----~~~~~l 494 (790)
.++.+.+.++.++.... ....+++|++|++++|.+++..|..+ ..+++|++|++++|++++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46677777766653211 11256779999999999999999888 889999999999999997655 345678
Q ss_pred ccccEEeccCccccccCCccccCCCCCCEEEccCCcCccc--CChhHHHHHHhhcccccCCCcccccccccccccccccc
Q 036932 495 LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS--IPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYY 572 (790)
Q Consensus 495 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 572 (790)
++|++|++++|++.+..+..+..+++|++|||++|++.+. ++....
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-------------------------------- 192 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC-------------------------------- 192 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC--------------------------------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh--------------------------------
Confidence 9999999999999999999999999999999999998742 110000
Q ss_pred cccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChh----hhhce-ecceeccCCcc
Q 036932 573 NSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSE----IGDLQ-IRGLNLSYNFL 647 (790)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~----~~~l~-L~~L~Ls~N~l 647 (790)
...++.|++|+|++|+++ .+|.. ++.+. |+.|||++|++
T Consensus 193 -----------------------------------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l 236 (310)
T 4glp_A 193 -----------------------------------PHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSL 236 (310)
T ss_dssp -----------------------------------TTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCC
T ss_pred -----------------------------------hhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCC
Confidence 023578999999999997 34432 35555 99999999999
Q ss_pred ccccCccccCC---CCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecCCCCCcCCCcCcccccCCc
Q 036932 648 SGSIPGSFSNL---KWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDKGQFATFDESSYRGNL 717 (790)
Q Consensus 648 ~g~ip~~l~~l---~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~ 717 (790)
++.+|..++.+ ++|+.|||++|+|+ .+|..+. ++|+.|||++|++++. |.-..+..+....+.||+
T Consensus 237 ~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 237 RATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred CccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence 99999888887 69999999999999 7788775 7999999999999973 333445555555666664
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=3.9e-21 Score=199.12 Aligned_cols=204 Identities=25% Similarity=0.279 Sum_probs=148.1
Q ss_pred hhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCC
Q 036932 298 IGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNEL 377 (790)
Q Consensus 298 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 377 (790)
+.+++++++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 344556666666666666 5665432 4566666666666665555666666666666666666543221 455556
Q ss_pred cEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccC
Q 036932 378 NELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQM 456 (790)
Q Consensus 378 ~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~ 456 (790)
++|++++|+++ .+|..+..+++|++|++++|.+++..+..+ .+++|++|++++
T Consensus 80 ~~L~Ls~N~l~--------------------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~ 133 (290)
T 1p9a_G 80 GTLDLSHNQLQ--------------------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133 (290)
T ss_dssp CEEECCSSCCS--------------------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC--------------------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC
Confidence 66666555554 344455566678888888888887777767 788888888888
Q ss_pred CcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCccc
Q 036932 457 NSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS 534 (790)
Q Consensus 457 n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~ 534 (790)
|++++..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+|..+..+++|+.++|++|++.+.
T Consensus 134 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 8888766677788899999999999999776667788999999999999998 7788888889999999999998754
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=6.6e-22 Score=210.49 Aligned_cols=197 Identities=19% Similarity=0.209 Sum_probs=126.4
Q ss_pred CcEEEccCCcCcccccccccCC--CCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCC-CchhhhhccCCCeEE
Q 036932 329 LGLLDLSGNNFYGQIFPKYMNL--TQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGH-IPHWIGNFSSDLKVL 405 (790)
Q Consensus 329 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~~~~~L~~L 405 (790)
++.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+++. +|..+..++. |+.|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~-L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSK-LQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCC-CSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCC-CCEE
Confidence 445555554443 2223333 4555555555555544433 33456666666666665543 5555555555 6666
Q ss_pred EccCccccccchhhhccCCCCCEEecCCc-cccCc-ccccc-cccccceeeccCC-cCccc-cchhhcCCC-CCcEEecc
Q 036932 406 LMSKMFLKGNIPAQLLNHGSLNLLSVSEN-CLSGP-MTSSF-NLSSLEHLYLQMN-SLSGP-IPIALFRSS-NLITLDLR 479 (790)
Q Consensus 406 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~-~l~~L~~L~L~~n-~l~~~-~p~~~~~~~-~L~~L~L~ 479 (790)
++++|.+++..+..+..+++|++|++++| .+++. .+..+ .+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 66666666666666667777777777777 45542 33334 6777778888777 77654 566677777 88888888
Q ss_pred CC--ccc-ccCchhhhcCccccEEeccCcc-ccccCCccccCCCCCCEEEccCCc
Q 036932 480 DN--RFS-GVIPHQISESLTLRFLLLRGNY-LEGQIPNQLCQLRRLGVLDLSHNR 530 (790)
Q Consensus 480 ~N--~l~-~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~Ls~N~ 530 (790)
+| .++ +.+|..+..+++|+.|++++|. +++..+..+..+++|+.|++++|.
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 88 444 4556667778888888888887 666677777888888888888885
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.1e-21 Score=195.56 Aligned_cols=195 Identities=18% Similarity=0.262 Sum_probs=132.5
Q ss_pred CCCEEecCCccccCcccccc-cccccceeeccCCc-CccccchhhcCCCCCcEEeccC-CcccccCchhhhcCccccEEe
Q 036932 425 SLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNS-LSGPIPIALFRSSNLITLDLRD-NRFSGVIPHQISESLTLRFLL 501 (790)
Q Consensus 425 ~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~-l~~~~p~~~~~~~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~ 501 (790)
++++|++++|.+++..+..+ .+++|++|++++|+ +++..+..|..+++|++|++++ |++++..+.++..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666666665555 66777777777775 6644455677777777777777 777766666677777777777
Q ss_pred ccCccccccCCccccCCCCCC---EEEccCC-cCcccCChhHHHHHHhhcccccCCCccccccccccccccccccccccc
Q 036932 502 LRGNYLEGQIPNQLCQLRRLG---VLDLSHN-RISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFH 577 (790)
Q Consensus 502 L~~N~l~~~~~~~l~~l~~L~---~L~Ls~N-~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 577 (790)
+++|++++ +|. +..+++|+ .|++++| ++++..+..+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~-------------------------------------- 151 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAF-------------------------------------- 151 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--------------------------------------
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccc--------------------------------------
Confidence 77777775 454 66777777 7778777 6663222222
Q ss_pred ccccCCCcccccCcceEEEEeeccceecccCcccccce-EEECCCCcccccCChhhhhce-ecceeccCCc-cccccCcc
Q 036932 578 FGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMV-GLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNF-LSGSIPGS 654 (790)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~-l~g~ip~~ 654 (790)
..++.|+ .|++++|+++ .+|....... |+.|+|++|+ +++..+..
T Consensus 152 -------------------------------~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~ 199 (239)
T 2xwt_C 152 -------------------------------QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199 (239)
T ss_dssp -------------------------------TTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTT
T ss_pred -------------------------------cchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHH
Confidence 1245677 7888888777 5555433333 8888888884 88666777
Q ss_pred ccCC-CCCCEEEccCCcccccCCccccCCCCCCeEecccCc
Q 036932 655 FSNL-KWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNN 694 (790)
Q Consensus 655 l~~l-~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~ 694 (790)
|+++ ++|+.||+++|+|++. |.. .++.|+.|+++++.
T Consensus 200 ~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred hhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence 8888 8888888888888854 433 56677888887663
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=9.1e-21 Score=190.95 Aligned_cols=195 Identities=18% Similarity=0.199 Sum_probs=114.6
Q ss_pred cCcEEEccCCcCcccccccccCCCCCcEEEcCCcc-cccccccccCCCCCCcEEEccc-ccCcCCCchhhhhccCCCeEE
Q 036932 328 SLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNK-FSGKIEEGLSNSNELNELDISN-NLLSGHIPHWIGNFSSDLKVL 405 (790)
Q Consensus 328 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~~~~~L~~L 405 (790)
+|++|++++|.+++..+..|.++++|++|++++|+ ++...+..|..+++|++|++++ |++++..+..+..++. |+.|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~-L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL-LKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT-CCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC-CCEE
Confidence 44444444444444444444444555555555543 4433333444445555555554 4444333344444444 5555
Q ss_pred EccCccccccchhhhccCCCCC---EEecCCc-cccCcccccc-cccccc-eeeccCCcCccccchhhcCCCCCcEEecc
Q 036932 406 LMSKMFLKGNIPAQLLNHGSLN---LLSVSEN-CLSGPMTSSF-NLSSLE-HLYLQMNSLSGPIPIALFRSSNLITLDLR 479 (790)
Q Consensus 406 ~l~~n~l~~~~~~~~~~~~~L~---~L~l~~n-~l~~~~~~~~-~l~~L~-~L~L~~n~l~~~~p~~~~~~~~L~~L~L~ 479 (790)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..+ .+++|+ +|++++|+++ .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 555554443 333 44555555 7777777 6666666555 677777 7777777777 455544444778888888
Q ss_pred CCc-ccccCchhhhcC-ccccEEeccCccccccCCccccCCCCCCEEEccCC
Q 036932 480 DNR-FSGVIPHQISES-LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN 529 (790)
Q Consensus 480 ~N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N 529 (790)
+|+ +++..+..+..+ ++|+.|++++|++++. |.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 884 776666777777 7888888888888743 332 5677788887765
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=7.3e-20 Score=185.67 Aligned_cols=160 Identities=21% Similarity=0.197 Sum_probs=121.1
Q ss_pred CCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeec
Q 036932 376 ELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYL 454 (790)
Q Consensus 376 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L 454 (790)
.++.|++++|.+++..+..+..++. |++|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTK-LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTT-CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCccc-CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 4444444444444444444444444 5555555555555555556666778888888888887777766 7888889999
Q ss_pred cCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCccc
Q 036932 455 QMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS 534 (790)
Q Consensus 455 ~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~ 534 (790)
++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 99988866666778899999999999999987777899999999999999999988888899999999999999999876
Q ss_pred CC
Q 036932 535 IP 536 (790)
Q Consensus 535 ~p 536 (790)
.+
T Consensus 195 ~~ 196 (251)
T 3m19_A 195 RC 196 (251)
T ss_dssp ST
T ss_pred cc
Confidence 44
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=8.6e-20 Score=190.98 Aligned_cols=199 Identities=25% Similarity=0.363 Sum_probs=143.3
Q ss_pred hhcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCc
Q 036932 31 GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLK 110 (790)
Q Consensus 31 ~~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (790)
.++.+++|++|++++|.+..++++..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +.+.++++|+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred cHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 345678899999999988877788889999999999998886543 78888999999999988753 3688889999
Q ss_pred EEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCC
Q 036932 111 VLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPN 190 (790)
Q Consensus 111 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~ 190 (790)
+|++++|++++. + .+..+++|++|++++|.+++. +. +.++++|++|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~n~----------------------- 162 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SP--LAGLTNLQYLSIGNAQ----------------------- 162 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCCEEECCSSC-----------------------
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-cc--ccCCCCccEEEccCCc-----------------------
Confidence 999999988864 3 388888999999998888743 22 6666666666666554
Q ss_pred CCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCC
Q 036932 191 YNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLP 270 (790)
Q Consensus 191 n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 270 (790)
+..++. +..+++|+.|++++|.++ .++. +..+++|++|++++|.+++.. ++..+++|+.|++++|.++ ..|
T Consensus 163 --l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~-~~~ 233 (308)
T 1h6u_A 163 --VSDLTP-LANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT-NQP 233 (308)
T ss_dssp --CCCCGG-GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE-CCC
T ss_pred --CCCChh-hcCCCCCCEEECCCCccC-cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee-cCC
Confidence 444443 555666666666666665 3333 345666777777776666553 3556677777777777766 344
Q ss_pred h
Q 036932 271 E 271 (790)
Q Consensus 271 ~ 271 (790)
.
T Consensus 234 ~ 234 (308)
T 1h6u_A 234 V 234 (308)
T ss_dssp E
T ss_pred e
Confidence 3
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=4.5e-20 Score=193.09 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=126.9
Q ss_pred cccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEc
Q 036932 279 KLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYL 358 (790)
Q Consensus 279 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 358 (790)
++..+.+..+.+++..+ ...+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 20 ~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L 92 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL 92 (308)
T ss_dssp HHHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEEC
T ss_pred HHHHHHhCCCCcCceec--HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEc
Confidence 33444555555543322 335566666666666665 4442 3456666666666666654333 555566666666
Q ss_pred CCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccC
Q 036932 359 ENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSG 438 (790)
Q Consensus 359 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 438 (790)
++|.+++. + .+..+++|++|++++|+++ +. + .+..+++|++|++++|.+++
T Consensus 93 ~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~-------------------------~~-~-~l~~l~~L~~L~l~~n~l~~ 143 (308)
T 1h6u_A 93 SGNPLKNV-S-AIAGLQSIKTLDLTSTQIT-------------------------DV-T-PLAGLSNLQVLYLDLNQITN 143 (308)
T ss_dssp CSCCCSCC-G-GGTTCTTCCEEECTTSCCC-------------------------CC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred cCCcCCCc-h-hhcCCCCCCEEECCCCCCC-------------------------Cc-h-hhcCCCCCCEEECCCCccCc
Confidence 66655532 2 3555555555555555554 21 1 14555666666666666665
Q ss_pred cccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCC
Q 036932 439 PMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQL 518 (790)
Q Consensus 439 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l 518 (790)
..+ ...+++|++|++++|++++. +. +..+++|+.|++++|++++..+ +..+++|++|++++|++++..+ +..+
T Consensus 144 ~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l 216 (308)
T 1h6u_A 144 ISP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANT 216 (308)
T ss_dssp CGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTC
T ss_pred Ccc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCC
Confidence 444 22666777777777777643 32 6677777777777777775433 6777777777777777775543 6777
Q ss_pred CCCCEEEccCCcCc
Q 036932 519 RRLGVLDLSHNRIS 532 (790)
Q Consensus 519 ~~L~~L~Ls~N~l~ 532 (790)
++|+.|++++|+++
T Consensus 217 ~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 217 SNLFIVTLTNQTIT 230 (308)
T ss_dssp TTCCEEEEEEEEEE
T ss_pred CCCCEEEccCCeee
Confidence 77888888888776
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=5.4e-20 Score=206.45 Aligned_cols=186 Identities=25% Similarity=0.338 Sum_probs=104.4
Q ss_pred CeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCC
Q 036932 402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDN 481 (790)
Q Consensus 402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N 481 (790)
++.|++++|.+++ +|..+. ++|++|++++|.++. +| -.+++|++|++++|++++ +|. +.. +|+.|++++|
T Consensus 61 L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~~-ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 61 FSELQLNRLNLSS-LPDNLP--PQITVLEITQNALIS-LP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp CSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCSC-CC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS
T ss_pred ccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCcc-cc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC
Confidence 6666666666654 454442 556666666666663 23 224566666666666664 454 433 6666666666
Q ss_pred cccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCccccccc
Q 036932 482 RFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFS 561 (790)
Q Consensus 482 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (790)
++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|+|++|++++ +|. +
T Consensus 131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l---------------------- 178 (571)
T 3cvr_A 131 QLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L---------------------- 178 (571)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C----------------------
T ss_pred cCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h----------------------
Confidence 6665 333 45566666666666664 343 35566666666666653 442 1
Q ss_pred ccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhcee----
Q 036932 562 AIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQI---- 637 (790)
Q Consensus 562 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~L---- 637 (790)
.+.|+.|+|++|+|+ .+|. +.. .|
T Consensus 179 -------------------------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~-~L~~~~ 206 (571)
T 3cvr_A 179 -------------------------------------------------PESLEALDVSTNLLE-SLPA-VPV-RNHHSE 206 (571)
T ss_dssp -------------------------------------------------CTTCCEEECCSSCCS-SCCC-CC--------
T ss_pred -------------------------------------------------hCCCCEEECcCCCCC-chhh-HHH-hhhccc
Confidence 024566666666666 5554 332 34
Q ss_pred ---cceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCC
Q 036932 638 ---RGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTEL 682 (790)
Q Consensus 638 ---~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l 682 (790)
+.|+|++|+|+ .+|..+..+++|+.|||++|.|++.+|..+..+
T Consensus 207 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 207 ETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred ccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 66666666666 455555556666666666666666666655554
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=7.5e-20 Score=195.34 Aligned_cols=241 Identities=18% Similarity=0.201 Sum_probs=153.5
Q ss_pred CEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcE-EEc
Q 036932 256 HHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGL-LDL 334 (790)
Q Consensus 256 ~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~-L~L 334 (790)
++++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+|...|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 46777777777 777655 3567777777777775444566777777777777777665666666666666554 444
Q ss_pred cCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccc
Q 036932 335 SGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKG 414 (790)
Q Consensus 335 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~ 414 (790)
..|++....+..|..+++|++|++++|+++...+..+....++..+++.++ +.+..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~------------------------~~i~~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN------------------------INIHT 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC------------------------TTCCE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc------------------------ccccc
Confidence 556666555556666666666666666665444444444444555555432 22222
Q ss_pred cchhhhccC-CCCCEEecCCccccCcccccccccccceeeccC-CcCccccc-hhhcCCCCCcEEeccCCcccccCchhh
Q 036932 415 NIPAQLLNH-GSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQM-NSLSGPIP-IALFRSSNLITLDLRDNRFSGVIPHQI 491 (790)
Q Consensus 415 ~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~-n~l~~~~p-~~~~~~~~L~~L~L~~N~l~~~~p~~~ 491 (790)
..+..+..+ ..++.|++++|.++...+..+...+|+.+++.+ |.++ .+| ..|..+++|++||+++|+|+...+..+
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 222233333 247778888888877666666667888888875 5555 454 567888899999999999986544444
Q ss_pred hcCccccEEeccCccccccCCccccCCCCCCEEEccCC
Q 036932 492 SESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN 529 (790)
Q Consensus 492 ~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N 529 (790)
. +|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus 223 ~---~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 223 E---NLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp T---TCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred c---cchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4 45555544443333666 3778899999998754
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.6e-19 Score=192.84 Aligned_cols=240 Identities=18% Similarity=0.192 Sum_probs=133.2
Q ss_pred ceeeccCceeeeChhhhcCCCCCCEEEcCCCCCCccc--cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCE-EecCC
Q 036932 16 WLFNNASNILFFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSE-FILRG 92 (790)
Q Consensus 16 ~l~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~-L~L~~ 92 (790)
.+...+++++.++.. + .+++++|+|++|+|+.++ +|.++++|++|+|++|.+.+.++..+|.+++++++ +.+++
T Consensus 13 ~v~C~~~~Lt~iP~~-l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTEIPSD-L--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCSCCTT-C--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCccCcC-c--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 344555556655532 2 245666666666666332 35666666666666666554444445555555543 33444
Q ss_pred CcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCccc
Q 036932 93 INIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSV 172 (790)
Q Consensus 93 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 172 (790)
|++....|.+|.++++|++|++++|++.+..+..+....++..|++ .++.....+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l-------------------------~~~~~i~~l 144 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI-------------------------QDNINIHTI 144 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE-------------------------ESCTTCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhh-------------------------ccccccccc
Confidence 5555555555555555555555555555444444444444444444 333333333
Q ss_pred ccCCCCCCc-cceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCC
Q 036932 173 KTENFLPTF-QLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTK 251 (790)
Q Consensus 173 ~~~~~~~~~-~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 251 (790)
+...|.... .++.|++++|+++.+|...+...+|+.+++++++..+.+|...|.++++|++|++++|.++.. +...
T Consensus 145 ~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l---p~~~ 221 (350)
T 4ay9_X 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL---PSYG 221 (350)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC---CSSS
T ss_pred cccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc---Chhh
Confidence 333344332 466677777777777776666677777777754333377776666777777777777777653 3334
Q ss_pred CCCCCEEEeecCCCCccCChhHHhhcccccEecccCC
Q 036932 252 HDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDN 288 (790)
Q Consensus 252 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n 288 (790)
+..|+.|.+.++.--..+|. + ..+++|+.++++++
T Consensus 222 ~~~L~~L~~l~~~~l~~lP~-l-~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLPT-L-EKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCEEECTTCTTCCCCCC-T-TTCCSCCEEECSCH
T ss_pred hccchHhhhccCCCcCcCCC-c-hhCcChhhCcCCCC
Confidence 45555555544432225553 1 24666666666543
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1.8e-19 Score=202.25 Aligned_cols=189 Identities=24% Similarity=0.279 Sum_probs=132.3
Q ss_pred cCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEc
Q 036932 328 SLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLM 407 (790)
Q Consensus 328 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l 407 (790)
+|+.|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|++|++++|++++ +|. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~---~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA---SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT---TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc---CCCEEEC
Confidence 56666666666655 34333 256666666666666 344 335667777777777765 555 443 3777777
Q ss_pred cCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccC
Q 036932 408 SKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVI 487 (790)
Q Consensus 408 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~ 487 (790)
++|.+++ +|. .+++|+.|++++|.+++. |. .+++|++|++++|++++ +|. +. ++|+.|+|++|+|+ .+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTML-PE--LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCcC-CC--cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 7777765 454 567788888888888773 33 46788888888888885 666 54 78888888888888 55
Q ss_pred chhhhcCccc-------cEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHH
Q 036932 488 PHQISESLTL-------RFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLL 544 (790)
Q Consensus 488 p~~~~~l~~L-------~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~ 544 (790)
|. +.. +| +.|++++|+|+ .+|..+..+++|+.|+|++|++++.+|..+..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 55 443 66 88999999888 57777777899999999999998888888877653
No 99
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=7e-20 Score=181.45 Aligned_cols=91 Identities=21% Similarity=0.172 Sum_probs=76.7
Q ss_pred cccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 036932 611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFN 689 (790)
Q Consensus 611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ 689 (790)
++.|+.|+|++|++++..|..++.+. |+.|+|++|+|++..|..|+++++|+.|||++|+|++.+|..|..+++|++|+
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 34566666666666655555666666 88888999999988899999999999999999999999999999999999999
Q ss_pred cccCcceecCCC
Q 036932 690 VSFNNLSGLIPD 701 (790)
Q Consensus 690 ls~N~l~g~iP~ 701 (790)
+++|+++|.++-
T Consensus 160 L~~N~l~c~c~l 171 (220)
T 2v70_A 160 LLANPFNCNCYL 171 (220)
T ss_dssp CCSCCEECSGGG
T ss_pred ecCcCCcCCCch
Confidence 999999998874
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=3.6e-19 Score=175.06 Aligned_cols=108 Identities=24% Similarity=0.272 Sum_probs=58.8
Q ss_pred CCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEecc
Q 036932 425 SLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLR 503 (790)
Q Consensus 425 ~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 503 (790)
++++|++++|.+++..+..+ .+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44455555555544444433 45555555555555554333444555555556665555554444445555566666666
Q ss_pred CccccccCCccccCCCCCCEEEccCCcCc
Q 036932 504 GNYLEGQIPNQLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 504 ~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~ 532 (790)
+|++++..+..+..+++|+.|++++|+++
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 66665555555555666666666666655
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.3e-19 Score=176.57 Aligned_cols=89 Identities=19% Similarity=0.144 Sum_probs=68.4
Q ss_pred ccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932 612 KYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV 690 (790)
Q Consensus 612 ~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l 690 (790)
+.|+.|+|++|++++..+..+..+. |+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..|..+++|++|++
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 3444555555555422223344454 778888888888888888999999999999999999988888999999999999
Q ss_pred ccCcceecCC
Q 036932 691 SFNNLSGLIP 700 (790)
Q Consensus 691 s~N~l~g~iP 700 (790)
++|++.+.++
T Consensus 160 ~~N~~~c~c~ 169 (220)
T 2v9t_B 160 AQNPFICDCH 169 (220)
T ss_dssp CSSCEECSGG
T ss_pred CCCCcCCCCc
Confidence 9999998664
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.6e-18 Score=170.47 Aligned_cols=133 Identities=21% Similarity=0.252 Sum_probs=58.8
Q ss_pred CCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEE
Q 036932 254 FLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLD 333 (790)
Q Consensus 254 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~ 333 (790)
+|++|++++|+++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .++...+..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence 3444444444443 233332233444444444444444333333344444444444444444 33333334444444444
Q ss_pred ccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCc
Q 036932 334 LSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLS 388 (790)
Q Consensus 334 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 388 (790)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 4444444443333444445555555555544433334444455555555555444
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=8.5e-19 Score=187.92 Aligned_cols=177 Identities=24% Similarity=0.172 Sum_probs=103.7
Q ss_pred eeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhh-cCccccEEeccCccccccCCccccCCCCCCEEEccCC
Q 036932 451 HLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQIS-ESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN 529 (790)
Q Consensus 451 ~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N 529 (790)
.++++++.++ .+|..+. +.++.|+|++|++++..+.++. .+++|+.|+|++|++++..+..|..+++|+.|+|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4455555554 3444332 2355555555555555555554 5555666666666555555555555666666666666
Q ss_pred cCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCc
Q 036932 530 RISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGS 609 (790)
Q Consensus 530 ~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (790)
++++..+..+ .
T Consensus 99 ~l~~~~~~~~---------------------------------------------------------------------~ 109 (361)
T 2xot_A 99 HLHTLDEFLF---------------------------------------------------------------------S 109 (361)
T ss_dssp CCCEECTTTT---------------------------------------------------------------------T
T ss_pred cCCcCCHHHh---------------------------------------------------------------------C
Confidence 6553222111 1
Q ss_pred ccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccc---cCCCCCCEEEccCCcccccCCccccCCCC-
Q 036932 610 NIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSF---SNLKWIESLDLSHNRLSGQVPPRLTELNF- 684 (790)
Q Consensus 610 ~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l---~~l~~L~~LdLs~N~lsg~ip~~l~~l~~- 684 (790)
.++.|+.|+|++|++++..|..+..+. |+.|+|++|+|++..+..| +.+++|+.|||++|+|++..+..+..++.
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~ 189 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHH
T ss_pred CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHh
Confidence 134566666666666655555666665 6677777777765444444 56788888888888888766677777776
Q ss_pred -CCeEecccCcceecC
Q 036932 685 -LSNFNVSFNNLSGLI 699 (790)
Q Consensus 685 -L~~L~ls~N~l~g~i 699 (790)
++.|+|++|++.|.+
T Consensus 190 ~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 190 VKNGLYLHNNPLECDC 205 (361)
T ss_dssp HHTTEECCSSCEECCH
T ss_pred hcceEEecCCCccCCc
Confidence 377888888887754
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=6.8e-18 Score=174.87 Aligned_cols=170 Identities=24% Similarity=0.354 Sum_probs=126.5
Q ss_pred cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEE
Q 036932 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVL 524 (790)
Q Consensus 445 ~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 524 (790)
.+++|+.|++++|.+++ ++ .+..+++|+.|++++|++++..+ +..+++|++|++++|++++. + .+..+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEE
Confidence 46677777777777763 33 36677778888888887775443 77777888888888877752 2 37778888888
Q ss_pred EccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeecccee
Q 036932 525 DLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYE 604 (790)
Q Consensus 525 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (790)
++++|++++ ++ .+
T Consensus 118 ~L~~n~i~~-~~-~l----------------------------------------------------------------- 130 (291)
T 1h6t_A 118 SLEHNGISD-IN-GL----------------------------------------------------------------- 130 (291)
T ss_dssp ECTTSCCCC-CG-GG-----------------------------------------------------------------
T ss_pred ECCCCcCCC-Ch-hh-----------------------------------------------------------------
Confidence 888888773 22 11
Q ss_pred cccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCC
Q 036932 605 LYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELN 683 (790)
Q Consensus 605 ~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~ 683 (790)
..++.|+.|++++|++++. ..++.+. |+.|+|++|++++..| ++.+++|+.|||++|+|++. | .+..++
T Consensus 131 ----~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~ 200 (291)
T 1h6t_A 131 ----VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLK 200 (291)
T ss_dssp ----GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCT
T ss_pred ----cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCC
Confidence 1256788888888888753 4666666 8888888888887665 88899999999999999864 4 488889
Q ss_pred CCCeEecccCccee
Q 036932 684 FLSNFNVSFNNLSG 697 (790)
Q Consensus 684 ~L~~L~ls~N~l~g 697 (790)
+|+.|++++|+++.
T Consensus 201 ~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 201 NLDVLELFSQECLN 214 (291)
T ss_dssp TCSEEEEEEEEEEC
T ss_pred CCCEEECcCCcccC
Confidence 99999999998875
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=6.3e-18 Score=168.51 Aligned_cols=89 Identities=24% Similarity=0.232 Sum_probs=66.9
Q ss_pred ccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932 612 KYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV 690 (790)
Q Consensus 612 ~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l 690 (790)
+.|+.|+|++|++++..+..+..+. |+.|+|++|+|+ .+|..++.+++|+.|||++|+|++..+..|..+++|+.|++
T Consensus 88 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 3455555555555543344445554 777777777777 67888888999999999999999888788899999999999
Q ss_pred ccCcceecCCC
Q 036932 691 SFNNLSGLIPD 701 (790)
Q Consensus 691 s~N~l~g~iP~ 701 (790)
++|++.|.++.
T Consensus 167 ~~N~~~c~c~~ 177 (229)
T 3e6j_A 167 FGNPWDCECRD 177 (229)
T ss_dssp TTSCBCTTBGG
T ss_pred eCCCccCCcch
Confidence 99999988763
No 106
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=8.4e-19 Score=204.41 Aligned_cols=123 Identities=24% Similarity=0.346 Sum_probs=72.6
Q ss_pred cchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcC
Q 036932 415 NIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISES 494 (790)
Q Consensus 415 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l 494 (790)
..+..+..++.|+.|+|++|.+....+..+.+++|++|+|++|.++ .+|..+..+++|++|+|++|+|+ .+|..+..+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3455566666666666666666644334446666666666666666 56666666666666666666666 456666666
Q ss_pred ccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHH
Q 036932 495 LTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLT 540 (790)
Q Consensus 495 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~ 540 (790)
++|++|+|++|.++ .+|..|..+++|+.|+|++|+++|.+|..+.
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 66666666666665 4555566666666666666666665555544
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=7.8e-18 Score=174.45 Aligned_cols=174 Identities=26% Similarity=0.328 Sum_probs=119.2
Q ss_pred hhcCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCc
Q 036932 31 GFANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLK 110 (790)
Q Consensus 31 ~~~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 110 (790)
.++.+++|++|++++|.+..++.+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+. +.+.++++|+
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 115 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCG--GGGTTCTTCC
T ss_pred chhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCC--hhhccCCCCC
Confidence 345677778888888877766677777888888888887775542 67777777777777777652 2377777777
Q ss_pred EEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCC
Q 036932 111 VLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPN 190 (790)
Q Consensus 111 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~ 190 (790)
+|++++|++++. ..+..+++|++|++++|.+++. ..+..+++|++|+++ +
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~-------------------------~ 165 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLE-------------------------D 165 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECC-------------------------S
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEcc-------------------------C
Confidence 777777777754 3567777777777777777643 245555555555555 4
Q ss_pred CCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccc
Q 036932 191 YNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTG 243 (790)
Q Consensus 191 n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~ 243 (790)
|.++.++. +..+++|+.|++++|.++ .++. +..+++|+.|++++|.++.
T Consensus 166 N~l~~~~~-l~~l~~L~~L~L~~N~i~-~l~~--l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 166 NQISDIVP-LAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SCCCCCGG-GTTCTTCCEEECCSSCCC-BCGG--GTTCTTCSEEEEEEEEEEC
T ss_pred Cccccchh-hcCCCccCEEECCCCcCC-CChh--hccCCCCCEEECcCCcccC
Confidence 45544544 666677777777777776 4543 4567777777777777665
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=1.9e-17 Score=163.87 Aligned_cols=154 Identities=22% Similarity=0.202 Sum_probs=123.3
Q ss_pred EEEcccccCcCCCchhhhhccCCCeEEEccCccccccch-hhhccCCCCCEEecCCccccCcccccc-cccccceeeccC
Q 036932 379 ELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIP-AQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQM 456 (790)
Q Consensus 379 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~ 456 (790)
.+++++|.++ .+|..+. ..++.|++++|.+++..+ ..+..+++|++|++++|.+++..+..+ .+++|++|+|++
T Consensus 15 ~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4555555554 3443322 124556666666555433 346677888888888888888777777 888999999999
Q ss_pred CcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932 457 NSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536 (790)
Q Consensus 457 n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p 536 (790)
|++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|..+..+++|+.|++++|++++..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99998778889999999999999999999889999999999999999999999889999999999999999999997766
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.73 E-value=8.8e-20 Score=206.03 Aligned_cols=215 Identities=20% Similarity=0.162 Sum_probs=126.9
Q ss_pred CCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccc
Q 036932 372 SNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLE 450 (790)
Q Consensus 372 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~ 450 (790)
..++.|+.|++++|+++ .+|..++.+.. |+.|++++|......|..+. .+...+..|..+ .+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~ll~-----------~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKE-LQELEPENKWCLLTIILLMR-----------ALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHH-----------HHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHH-HHHhccccchhhhhHHHHHH-----------hcccccCCHHHHHHHHhcc
Confidence 44566666666666665 55666666665 66666655432111111110 111233334443 455555
Q ss_pred eee-ccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCC
Q 036932 451 HLY-LQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHN 529 (790)
Q Consensus 451 ~L~-L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N 529 (790)
.|+ ++.|.+. .|+.+.+++|.+++..+ ..|+.|++++|.+++ +|. ++.+++|+.|+|++|
T Consensus 413 ~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 413 AVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSS
T ss_pred cCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcc
Confidence 555 4444332 23333444444442211 136677777777764 454 677777777777777
Q ss_pred cCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCc
Q 036932 530 RISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGS 609 (790)
Q Consensus 530 ~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (790)
+++ .+|..++.
T Consensus 474 ~l~-~lp~~~~~-------------------------------------------------------------------- 484 (567)
T 1dce_A 474 RLR-ALPPALAA-------------------------------------------------------------------- 484 (567)
T ss_dssp CCC-CCCGGGGG--------------------------------------------------------------------
T ss_pred ccc-ccchhhhc--------------------------------------------------------------------
Confidence 777 66654432
Q ss_pred ccccceEEECCCCcccccCChhhhhce-ecceeccCCcccccc-CccccCCCCCCEEEccCCcccccCCcc---ccCCCC
Q 036932 610 NIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSI-PGSFSNLKWIESLDLSHNRLSGQVPPR---LTELNF 684 (790)
Q Consensus 610 ~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~i-p~~l~~l~~L~~LdLs~N~lsg~ip~~---l~~l~~ 684 (790)
++.|+.|+|++|++++ +| .++.+. |+.|+|++|+|++.+ |..|+++++|+.|||++|+|++.+|.. +..+++
T Consensus 485 -l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 485 -LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp -CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred -CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 4567777777777774 56 666666 777888888888776 888888888888888888888765532 233677
Q ss_pred CCeEec
Q 036932 685 LSNFNV 690 (790)
Q Consensus 685 L~~L~l 690 (790)
|+.||+
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 777764
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=4.5e-17 Score=184.96 Aligned_cols=193 Identities=20% Similarity=0.263 Sum_probs=137.4
Q ss_pred cccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEE
Q 036932 277 LQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFL 356 (790)
Q Consensus 277 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 356 (790)
+..+..+.++.+.+.+..+ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+.+..+ +..+++|+.|
T Consensus 20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 4456666777777765443 456778888888888876 5653 4678888888888888876554 7778888888
Q ss_pred EcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932 357 YLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL 436 (790)
Q Consensus 357 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 436 (790)
+|++|.+++ ++ .+..+++|+.|+|++|++.+ + +.+..++. |+.|++++|.+++. ..+..+++|+.|+|++|.+
T Consensus 93 ~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~-L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 93 FLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQ-LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp ECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTT-CSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred ECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCc-cCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence 888888874 23 57778888888888888874 2 34666666 77777777777654 5666777777777777777
Q ss_pred cCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCccccc
Q 036932 437 SGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGV 486 (790)
Q Consensus 437 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~ 486 (790)
++..+ ...+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+.
T Consensus 166 ~~~~~-l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 166 SDIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCGG-GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCchh-hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 76655 22677777777777777743 3567777777777777777654
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=3.4e-19 Score=201.24 Aligned_cols=183 Identities=21% Similarity=0.219 Sum_probs=138.5
Q ss_pred cccccceeeccCCcCccccchhhcCCCCCcEEeccCCc-------------ccccCchhhhcCccccEEe-ccCcccccc
Q 036932 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNR-------------FSGVIPHQISESLTLRFLL-LRGNYLEGQ 510 (790)
Q Consensus 445 ~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~~ 510 (790)
.++.|+.|+|++|+++ .+|..+..+++|+.|++++|. ..+.+|..++.+++|+.|+ ++.|.+...
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 3455666666666665 556666666666666665553 4556666777777777777 455443211
Q ss_pred CCc-----cccC--CCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCC
Q 036932 511 IPN-----QLCQ--LRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGN 583 (790)
Q Consensus 511 ~~~-----~l~~--l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 583 (790)
... .+.. ...|+.|+|++|++++ +|. ++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~------------------------------------------- 460 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LE------------------------------------------- 460 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GG-------------------------------------------
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcC-cc-------------------------------------------
Confidence 000 0000 1358999999999985 664 32
Q ss_pred CcccccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCC
Q 036932 584 GVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIE 662 (790)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~ 662 (790)
.++.|+.|+|++|+++ .+|..++.+. |+.|+|++|+|++ +| .++++++|+
T Consensus 461 --------------------------~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~ 511 (567)
T 1dce_A 461 --------------------------QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ 511 (567)
T ss_dssp --------------------------GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred --------------------------ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence 2568999999999999 8999999998 9999999999997 77 899999999
Q ss_pred EEEccCCcccccC-CccccCCCCCCeEecccCcceecCCCC
Q 036932 663 SLDLSHNRLSGQV-PPRLTELNFLSNFNVSFNNLSGLIPDK 702 (790)
Q Consensus 663 ~LdLs~N~lsg~i-p~~l~~l~~L~~L~ls~N~l~g~iP~~ 702 (790)
.|||++|+|++.+ |..++.+++|+.|+|++|++++.+|..
T Consensus 512 ~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 9999999999988 999999999999999999999987754
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=7.8e-18 Score=162.85 Aligned_cols=113 Identities=26% Similarity=0.309 Sum_probs=90.2
Q ss_pred cccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 036932 611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFN 689 (790)
Q Consensus 611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ 689 (790)
++.|+.|+|++|++++.+|..++.+. |+.|+|++|+|++..|..|+++++|+.|||++|+|++.+|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 45777888888888877788888776 99999999999988888899999999999999999999999999999999999
Q ss_pred cccCcceecCCCCCcCCCcCcccccCCcCCCCCC
Q 036932 690 VSFNNLSGLIPDKGQFATFDESSYRGNLHLCGPT 723 (790)
Q Consensus 690 ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~ 723 (790)
|++|+++|.+|......++....+.++...|+.|
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999988743222222333345555556554
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=3.3e-18 Score=199.42 Aligned_cols=195 Identities=19% Similarity=0.141 Sum_probs=129.6
Q ss_pred EEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCcc
Q 036932 428 LLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNY 506 (790)
Q Consensus 428 ~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 506 (790)
.+++..|.+. ..+..+ .++.|+.|+|++|.+. .+|..++.+++|++|+|++|+|+ .+|..+..+++|++|+|++|+
T Consensus 205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 3445556655 445555 8899999999999998 78888889999999999999999 889999999999999999999
Q ss_pred ccccCCccccCCCCCCEEEccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcc
Q 036932 507 LEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVY 586 (790)
Q Consensus 507 l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 586 (790)
|+ .+|..+..+++|+.|+|++|.|+ .+|..++
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~---------------------------------------------- 313 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFG---------------------------------------------- 313 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTT----------------------------------------------
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhh----------------------------------------------
Confidence 99 78999999999999999999997 7776542
Q ss_pred cccCcceEEEEeeccceecccCcccccceEEECCCCcccccCChhhhhce--ecceeccCCccccccCccccCCCCCCEE
Q 036932 587 SIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ--IRGLNLSYNFLSGSIPGSFSNLKWIESL 664 (790)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~--L~~L~Ls~N~l~g~ip~~l~~l~~L~~L 664 (790)
.++.|+.|+|++|.|+|.+|..++.+. ...++|++|.++|.+|.. |+.|
T Consensus 314 -----------------------~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l 364 (727)
T 4b8c_D 314 -----------------------NLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFI 364 (727)
T ss_dssp -----------------------SCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------
T ss_pred -----------------------cCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------ccee
Confidence 257899999999999999999988765 456899999999999965 5567
Q ss_pred EccCC--------cccccCCccccCCCCCCeEecccCcceecCCCC
Q 036932 665 DLSHN--------RLSGQVPPRLTELNFLSNFNVSFNNLSGLIPDK 702 (790)
Q Consensus 665 dLs~N--------~lsg~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 702 (790)
++++| .|.+.++..+..+..+....+++|-+.+.....
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~~~ 410 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYATP 410 (727)
T ss_dssp -------------------------------------CCCGGGCCT
T ss_pred EeecccccccccCCccccccchhhcccccceeeeeccccccccCcc
Confidence 77777 566666667777888888999999998665544
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.5e-17 Score=169.39 Aligned_cols=170 Identities=19% Similarity=0.208 Sum_probs=132.5
Q ss_pred cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEE
Q 036932 445 NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVL 524 (790)
Q Consensus 445 ~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 524 (790)
.+.++..+++++|.+++ ++ .+..+++|+.|++++|+++. ++ .+..+++|+.|++++|++++..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 45667777888888874 33 56777888888888888874 44 67788888888888888886544 7888888888
Q ss_pred EccCCcCcccCChhHHHHHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeecccee
Q 036932 525 DLSHNRISGSIPSCLTIMLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYE 604 (790)
Q Consensus 525 ~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (790)
++++|++++ +|..
T Consensus 91 ~L~~N~l~~-l~~~------------------------------------------------------------------ 103 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI------------------------------------------------------------------ 103 (263)
T ss_dssp ECCSSCCSC-CTTC------------------------------------------------------------------
T ss_pred ECCCCccCC-cCcc------------------------------------------------------------------
Confidence 888888873 3310
Q ss_pred cccCcccccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCC
Q 036932 605 LYNGSNIKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELN 683 (790)
Q Consensus 605 ~~~~~~l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~ 683 (790)
.. +.|+.|++++|++++ +| .++.+. |+.|+|++|++++. | .++.+++|+.|||++|++++. ..+..++
T Consensus 104 ----~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~ 172 (263)
T 1xeu_A 104 ----PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLK 172 (263)
T ss_dssp ----CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCC
T ss_pred ----cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCC
Confidence 01 468888899988885 43 466676 89999999999865 4 688899999999999999876 6788899
Q ss_pred CCCeEecccCcceec
Q 036932 684 FLSNFNVSFNNLSGL 698 (790)
Q Consensus 684 ~L~~L~ls~N~l~g~ 698 (790)
+|+.|++++|++++.
T Consensus 173 ~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 173 KVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCEEEEEEEEEECC
T ss_pred CCCEEeCCCCcccCC
Confidence 999999999998875
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=6.3e-17 Score=160.10 Aligned_cols=153 Identities=20% Similarity=0.192 Sum_probs=118.5
Q ss_pred EEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCC
Q 036932 379 ELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMN 457 (790)
Q Consensus 379 ~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n 457 (790)
.++++++.++ .+|..+. ..++.|++++|.+++..+..+..+++|++|++++|.+++..+..+ .+++|++|+|++|
T Consensus 15 ~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4455555554 3443322 226666666666665555667777788888888888887777777 7888888888888
Q ss_pred cCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccC
Q 036932 458 SLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSI 535 (790)
Q Consensus 458 ~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~ 535 (790)
++++..+..|..+++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.|++++|++.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 888655556788899999999999999888888999999999999999999888888999999999999999988543
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=7.5e-17 Score=183.11 Aligned_cols=195 Identities=19% Similarity=0.196 Sum_probs=158.4
Q ss_pred ccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEE
Q 036932 301 MKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNEL 380 (790)
Q Consensus 301 l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 380 (790)
+..+..+.+..+.+.+.++. ..+++|+.|++++|.+... +.+..+++|+.|+|++|.+++..+ +..+++|+.|
T Consensus 20 l~~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred HHHHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence 45677788888888754443 4678999999999999764 358889999999999999987655 8899999999
Q ss_pred EcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCc
Q 036932 381 DISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLS 460 (790)
Q Consensus 381 ~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~ 460 (790)
+|++|.+.+ +| .+..++. |+.|++++|.+.+. ..+..+++|+.|+|++|.+++. +....+++|+.|+|++|.++
T Consensus 93 ~Ls~N~l~~-l~-~l~~l~~-L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 93 FLDENKIKD-LS-SLKDLKK-LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp ECCSSCCCC-CT-TSTTCTT-CCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCC
T ss_pred ECcCCCCCC-Ch-hhccCCC-CCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCC
Confidence 999999985 33 6777777 99999999998863 4588889999999999998876 33337889999999999998
Q ss_pred cccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCC
Q 036932 461 GPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIP 512 (790)
Q Consensus 461 ~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~ 512 (790)
+..| +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.+...
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred Cchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 7655 88889999999999998864 358888899999999998876533
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=1.7e-16 Score=158.11 Aligned_cols=155 Identities=20% Similarity=0.150 Sum_probs=122.7
Q ss_pred CcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeecc
Q 036932 377 LNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQ 455 (790)
Q Consensus 377 L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~ 455 (790)
.+.++.+++.+. .+|..+. .+++.|++++|.+++..|..+..+++|++|++++|.+++..+..+ .+++|++|+|+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 344555555554 4444332 226666666666666666677777788888888888877776766 78899999999
Q ss_pred CCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccC
Q 036932 456 MNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSI 535 (790)
Q Consensus 456 ~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~ 535 (790)
+|++++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99998766777888999999999999998 67888999999999999999999877788999999999999999999766
Q ss_pred C
Q 036932 536 P 536 (790)
Q Consensus 536 p 536 (790)
+
T Consensus 176 ~ 176 (229)
T 3e6j_A 176 R 176 (229)
T ss_dssp G
T ss_pred c
Confidence 5
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=8.1e-17 Score=156.53 Aligned_cols=128 Identities=21% Similarity=0.332 Sum_probs=97.5
Q ss_pred cCCCCCCEEEcCCCCCCccccCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEE
Q 036932 33 ANLTNLKILDLSGCGITTLQGLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVL 112 (790)
Q Consensus 33 ~~l~~L~~L~Ls~n~i~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (790)
+.+++|++|++++|.++.++.+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc---hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 56778888888888888666788888888888888877643 357788888888888888887777788888888888
Q ss_pred EccCCCCCCCChhhhcCCCCCCEEeCcCCc-CccccchhhhhCCCCCcEEEccCC
Q 036932 113 DISYNQLSGTLPSAITTLTSLEYLALLDNN-FEGTFLLNSLANHSKLEVLLLSSR 166 (790)
Q Consensus 113 ~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~l~~L~~L~L~~n 166 (790)
++++|++++..|..++.+++|++|++++|. ++ .++ .+.++++|++|++++|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~--~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM--PLKTLPELKSLNIQFD 169 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG--GGGGCSSCCEEECTTB
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH--hhcCCCCCCEEECCCC
Confidence 888888887777888888888888888887 44 333 3555555555555443
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.69 E-value=8.6e-17 Score=156.35 Aligned_cols=81 Identities=19% Similarity=0.272 Sum_probs=43.4
Q ss_pred cceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 036932 613 YMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVS 691 (790)
Q Consensus 613 ~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls 691 (790)
.|+.|++++|++++..|..++.+. |+.|+|++|++.+.+| .++.+++|+.|++++|++++ +| .+..+++|++|+++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAF 189 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEEC
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEee
Confidence 344444444444444444444444 5555555555222344 46666777777777777765 33 56667777777777
Q ss_pred cCcce
Q 036932 692 FNNLS 696 (790)
Q Consensus 692 ~N~l~ 696 (790)
+|++.
T Consensus 190 ~N~i~ 194 (197)
T 4ezg_A 190 SQTIG 194 (197)
T ss_dssp BC---
T ss_pred CcccC
Confidence 77654
No 120
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=5.4e-17 Score=173.84 Aligned_cols=157 Identities=26% Similarity=0.209 Sum_probs=101.7
Q ss_pred CcEEEcccccCcCCCchhhh-hccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeec
Q 036932 377 LNELDISNNLLSGHIPHWIG-NFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYL 454 (790)
Q Consensus 377 L~~L~Ls~n~l~~~~p~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L 454 (790)
++.|++++|++++..+..+. .+.. |+.|++++|.+++..+..|..+++|++|++++|.+++..+..+ .+++|++|+|
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~-L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTN-LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCCCccChhhhhhcccc-cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 44444444444433333333 3333 4444444444444444555666667777777777776666656 6777777777
Q ss_pred cCCcCccccchhhcCCCCCcEEeccCCcccccCchhh---hcCccccEEeccCccccccCCccccCCCC--CCEEEccCC
Q 036932 455 QMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQI---SESLTLRFLLLRGNYLEGQIPNQLCQLRR--LGVLDLSHN 529 (790)
Q Consensus 455 ~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~~~~l~~l~~--L~~L~Ls~N 529 (790)
++|++++..|..|..+++|+.|+|++|++++..+..+ ..+++|+.|+|++|++++..+..+..++. ++.|+|++|
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence 7787776667777778888888888888876544444 56788888888888888666566777776 478999999
Q ss_pred cCccc
Q 036932 530 RISGS 534 (790)
Q Consensus 530 ~l~g~ 534 (790)
++.+.
T Consensus 200 ~~~C~ 204 (361)
T 2xot_A 200 PLECD 204 (361)
T ss_dssp CEECC
T ss_pred CccCC
Confidence 88754
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=1.5e-16 Score=153.87 Aligned_cols=89 Identities=22% Similarity=0.243 Sum_probs=58.6
Q ss_pred ccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932 612 KYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV 690 (790)
Q Consensus 612 ~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l 690 (790)
+.|+.|+|++|++++..|..++.+. |+.|+|++|+|++.+|..|+.+++|+.|||++|.+++..+...- ...++...+
T Consensus 78 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~-~~~l~~~~~ 156 (192)
T 1w8a_A 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSL 156 (192)
T ss_dssp TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHH-HHHHHHcCC
Confidence 4555566666666655555566665 88888888888888888899999999999999999887663210 011222234
Q ss_pred ccCcceecCCC
Q 036932 691 SFNNLSGLIPD 701 (790)
Q Consensus 691 s~N~l~g~iP~ 701 (790)
..+...+.-|.
T Consensus 157 ~~~~~~C~~P~ 167 (192)
T 1w8a_A 157 NGGAARCGAPS 167 (192)
T ss_dssp SGGGCBBCSST
T ss_pred CCCCCCCCCCh
Confidence 44555555554
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=5.8e-17 Score=171.39 Aligned_cols=220 Identities=11% Similarity=0.103 Sum_probs=142.9
Q ss_pred CCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCC---CCcccccCCCCCCcc
Q 036932 106 LSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRT---NMLSVKTENFLPTFQ 182 (790)
Q Consensus 106 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~---~~~~~~~~~~~~~~~ 182 (790)
+++|+.|+|++ +++.+.+.+|.+|++|+.+++++|.+. .++...|..+.++..+...... ....+....|..+..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 56666666655 555444555666666666666655554 4444555555555544443311 011122223444445
Q ss_pred ce-EEeCCCCCCCCcchhhh----CCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCE
Q 036932 183 LK-VLGLPNYNLKVIPSFLL----HQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHH 257 (790)
Q Consensus 183 L~-~L~l~~n~l~~lp~~l~----~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 257 (790)
|+ .+.+... +.++..+. ...+++.+.+.++-.. .....+...+++|+.+++++|.++......|..+.+|+.
T Consensus 178 L~~~i~~~~~--~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 178 LETTIQVGAM--GKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp CEEEEEECTT--CCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred cceeEEecCC--CcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 54 3333322 23333322 2345677777665322 222233335788888888888888877777888888999
Q ss_pred EEeecCCCCccCChhHHhhccccc-EecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEc
Q 036932 258 LDVSNNNLTGKLPEDMGIILQKLL-YIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDL 334 (790)
Q Consensus 258 L~Ls~n~l~~~~p~~~~~~l~~L~-~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L 334 (790)
+++.+| +. .++...|..+++|+ .+++.+ .++...+.+|.++++|+.++++.|+++ .++...|.++++|+.++.
T Consensus 255 l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 255 IKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred EECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhcc
Confidence 999887 66 78888888899999 999988 777677788999999999999999998 899888999999998863
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=3.2e-16 Score=165.62 Aligned_cols=284 Identities=13% Similarity=0.081 Sum_probs=188.8
Q ss_pred CCCCcEEeccCCcccccccCCCC-CCCCCCEEEeecCCCC--ccCChhHHhhcccccEecccCCccccccchhhhc----
Q 036932 228 NTKLEALFLTNNSFTGNLQLPKT-KHDFLHHLDVSNNNLT--GKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGE---- 300 (790)
Q Consensus 228 l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~Ls~n~l~--~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~---- 300 (790)
+.+++.|.++++--.... ..+. .+++|++|||++|++. ...+ . .++.++.+.+..+.+ .+.+|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~-~---~~~~~~~~~~~~~~I---~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKA-G---TYPNGKFYIYMANFV---PAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESS-S---SSGGGCCEEECTTEE---CTTTTEEEETT
T ss_pred hCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCcc-c---ccccccccccccccc---CHHHhcccccc
Confidence 356777777764211000 0111 2677888888888876 1111 1 122234444444432 2344555
Q ss_pred ----ccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCccc----ccccccccC
Q 036932 301 ----MKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKF----SGKIEEGLS 372 (790)
Q Consensus 301 ----l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~ 372 (790)
+++|+.+++.+ .++ .++...|.+|++|+.+++.+|.+....+.+|.++.++..+....+.. .......|.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 88888888888 776 78888888888888888888888777777777777777776655321 222334455
Q ss_pred CCCCCc-EEEcccccCcCCCchhhhhc---cCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-ccc
Q 036932 373 NSNELN-ELDISNNLLSGHIPHWIGNF---SSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLS 447 (790)
Q Consensus 373 ~l~~L~-~L~Ls~n~l~~~~p~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~ 447 (790)
.+..|+ .+.+.... .++..+... ..++..+.+.++-...........|++|+.+++++|.++...+..| +++
T Consensus 174 ~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~ 250 (329)
T 3sb4_A 174 EGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK 250 (329)
T ss_dssp ESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT
T ss_pred cccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC
Confidence 566666 44443321 233322211 2225666665543222222222248899999999999998888888 899
Q ss_pred ccceeeccCCcCccccchhhcCCCCCc-EEeccCCcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEc
Q 036932 448 SLEHLYLQMNSLSGPIPIALFRSSNLI-TLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDL 526 (790)
Q Consensus 448 ~L~~L~L~~n~l~~~~p~~~~~~~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 526 (790)
+|+.+++.+| ++..-+.+|.+|++|+ .+++.+ +++...+.+|.+|++|+.+++++|.++...+.+|.++++|+.++.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999999988 7756677899999999 999998 788777889999999999999999999888889999999998864
No 124
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=3.9e-16 Score=158.96 Aligned_cols=170 Identities=22% Similarity=0.310 Sum_probs=113.5
Q ss_pred CCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEE
Q 036932 326 CISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVL 405 (790)
Q Consensus 326 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L 405 (790)
+.+++.++++++.+.+.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|++++.
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~--------------- 78 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDL--------------- 78 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC---------------
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCC---------------
Confidence 345566667777766433 45566677777777776663 33 455666666666666666532
Q ss_pred EccCccccccchhhhccCCCCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccc
Q 036932 406 LMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSG 485 (790)
Q Consensus 406 ~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~ 485 (790)
.+ +..+++|++|++++|.+++..+.. . ++|++|++++|++++ ++ .+..+++|+.|++++|++++
T Consensus 79 ----------~~--l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 79 ----------SP--LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp ----------GG--GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB
T ss_pred ----------hh--hccCCCCCEEECCCCccCCcCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC
Confidence 22 445556666666666666533222 2 677788888887775 33 57778888888888888875
Q ss_pred cCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCccc
Q 036932 486 VIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGS 534 (790)
Q Consensus 486 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~ 534 (790)
. + .+..+++|++|++++|++++. ..+..+++|+.|++++|++++.
T Consensus 143 ~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 I-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred C-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 4 3 677788888888888888766 5677888888888888887743
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.63 E-value=8.5e-15 Score=158.80 Aligned_cols=317 Identities=15% Similarity=0.150 Sum_probs=188.6
Q ss_pred cCceeeeChhhhcCCCCCCEEEcCCCCCCccc--cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCccc
Q 036932 21 ASNILFFIVVGFANLTNLKILDLSGCGITTLQ--GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGH 98 (790)
Q Consensus 21 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 98 (790)
..++++|...+|.++++|+.+.+..+ ++.+. +|.+|++|+.+++..+ ++ .+...+|..+.+|+.+.+..+ +...
T Consensus 56 ~y~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i 131 (394)
T 4fs7_A 56 KYDVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSI 131 (394)
T ss_dssp EEEEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred eeeEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeee
Confidence 34688899999999999999999854 66443 6999999999999866 54 334467889999998887754 4445
Q ss_pred CCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCC
Q 036932 99 LPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFL 178 (790)
Q Consensus 99 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 178 (790)
-..+|.++..++...... ...+...+|.++++|+.+.+.++.. .+....|.++.+|+.+++..+ ...+....|.
T Consensus 132 ~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~ 205 (394)
T 4fs7_A 132 GVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFA 205 (394)
T ss_dssp CTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT--CCEECTTTTT
T ss_pred cceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC--ceEeCchhhc
Confidence 566777776555444333 2324456788899999998876542 466677888888888888754 3455555677
Q ss_pred CCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEE
Q 036932 179 PTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHL 258 (790)
Q Consensus 179 ~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 258 (790)
.+..|+.+.+..+.. .+........+|+.+.+... ++ .+....+.++..++.+.+..+... .....+..+..++.+
T Consensus 206 ~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~ 281 (394)
T 4fs7_A 206 ECILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKV 281 (394)
T ss_dssp TCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEE
T ss_pred cccccceeecCCCce-EeehhhcccCCCceEEECCC-ce-ecccccccccccceeEEcCCCcce-eecccccccccccee
Confidence 777777766655432 23333444556666666543 22 344444556666666666554322 222334455555555
Q ss_pred EeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCc
Q 036932 259 DVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNN 338 (790)
Q Consensus 259 ~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~ 338 (790)
....+ .++...+..+.+|+.+.+..+ ++..-..+|.++.+|+.+++..+ ++ .++...|.+|.+|+.+++..+
T Consensus 282 ~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~- 353 (394)
T 4fs7_A 282 IYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS- 353 (394)
T ss_dssp EECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-
T ss_pred ccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-
Confidence 55443 233334444555555555433 33233444555555555555432 33 444444555555555555433
Q ss_pred CcccccccccCCCCCcEEEcC
Q 036932 339 FYGQIFPKYMNLTQLEFLYLE 359 (790)
Q Consensus 339 l~~~~~~~~~~l~~L~~L~L~ 359 (790)
+......+|.+|++|+.+++.
T Consensus 354 l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 354 LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCEECTTTBTTCTTCCEEEEE
T ss_pred ccEehHHHhhCCCCCCEEEEC
Confidence 333333444455555555443
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=6.5e-16 Score=149.22 Aligned_cols=90 Identities=27% Similarity=0.274 Sum_probs=78.7
Q ss_pred cccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEe
Q 036932 611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFN 689 (790)
Q Consensus 611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ 689 (790)
++.|+.|||++|++++..|..+..+. |+.|+|++|+|++..|..|+++++|+.|+|++|+|++..+..|..+++|+.|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 45677778888888766666777776 99999999999988889999999999999999999988888899999999999
Q ss_pred cccCcceecCC
Q 036932 690 VSFNNLSGLIP 700 (790)
Q Consensus 690 ls~N~l~g~iP 700 (790)
+++|++.|.++
T Consensus 133 L~~N~~~C~c~ 143 (193)
T 2wfh_A 133 IGANPLYCDCN 143 (193)
T ss_dssp CCSSCEECSGG
T ss_pred eCCCCeecCCc
Confidence 99999998765
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.60 E-value=3.3e-14 Score=153.33 Aligned_cols=264 Identities=13% Similarity=0.150 Sum_probs=163.3
Q ss_pred CCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceE
Q 036932 106 LSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKV 185 (790)
Q Consensus 106 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~ 185 (790)
+..++.+.+.++ ++.+...+|.++ +|+.+.+..+ ++ .+....|.++ +|+.+.+.. ....+....|..+.+|+.
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCe
Confidence 355666666543 444445566664 5677766555 33 4555566663 577776664 344555566777777777
Q ss_pred EeCCCCCCCCcchhhhCCCCCCEEEccCCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCC
Q 036932 186 LGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNL 265 (790)
Q Consensus 186 L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 265 (790)
+++..|++..++...+.+.+|+.+.+..+ ++ .++...|.++++|+.+++..+ ++......+.. .+|+.+.+ .+.+
T Consensus 185 l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTC
T ss_pred eecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCc
Confidence 77777778777776666788888888754 55 677777778888888888764 44443344544 66777777 3445
Q ss_pred CccCChhHHhhcccccEecccCCccc-----cccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCc
Q 036932 266 TGKLPEDMGIILQKLLYIDMSDNRFE-----GYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFY 340 (790)
Q Consensus 266 ~~~~p~~~~~~l~~L~~L~Ls~n~l~-----~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 340 (790)
+ .++...|..+++|+.+++.++.+. ...+.+|.++++|+.+++.+ .++ .++...|.+|++|+.+.+..+ +.
T Consensus 260 ~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 260 T-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp C-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CC
T ss_pred c-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-cc
Confidence 5 677777777777777777776554 24445566666666666663 344 566666666666666666433 44
Q ss_pred ccccccccCCCCCcEEEcCCcccccccccccCCCC-CCcEEEccccc
Q 036932 341 GQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSN-ELNELDISNNL 386 (790)
Q Consensus 341 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~ 386 (790)
.....+|.++ +|+.+++.+|.+....+..|..++ .++.|.+..+.
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 4444556666 666666666655544444555443 45555555443
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.5e-15 Score=140.89 Aligned_cols=60 Identities=22% Similarity=0.153 Sum_probs=37.8
Q ss_pred ecceeccCCccccc-cCccccCCCCCCEEEccCCcccccCC---ccccCCCCCCeEecccCcce
Q 036932 637 IRGLNLSYNFLSGS-IPGSFSNLKWIESLDLSHNRLSGQVP---PRLTELNFLSNFNVSFNNLS 696 (790)
Q Consensus 637 L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~lsg~ip---~~l~~l~~L~~L~ls~N~l~ 696 (790)
|+.|+|++|++++. .+..++.+++|+.||+++|++++..+ ..+..+++|++|++++|.+.
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 44555555555532 12556677777777777777775555 46677777777777777665
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.5e-15 Score=138.78 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=63.1
Q ss_pred cccceEEECCCCcccccCChhhhhce-ecceeccCCccccc-cCccccCCCCCCEEEccCCcccccCC---ccccCCCCC
Q 036932 611 IKYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGS-IPGSFSNLKWIESLDLSHNRLSGQVP---PRLTELNFL 685 (790)
Q Consensus 611 l~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~-ip~~l~~l~~L~~LdLs~N~lsg~ip---~~l~~l~~L 685 (790)
++.|+.|++++|++++.+|..++.+. |+.|++++|++++. .|..++.+++|+.||+++|++++..+ ..+..+++|
T Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 45677777777777766776666665 88888888888763 45778888999999999999987766 578888889
Q ss_pred CeEeccc
Q 036932 686 SNFNVSF 692 (790)
Q Consensus 686 ~~L~ls~ 692 (790)
++||+++
T Consensus 143 ~~L~l~d 149 (149)
T 2je0_A 143 TYLDGYD 149 (149)
T ss_dssp CEETTBC
T ss_pred ccccCCC
Confidence 9888863
No 130
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=5.5e-14 Score=151.61 Aligned_cols=270 Identities=11% Similarity=0.148 Sum_probs=144.0
Q ss_pred CCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEe
Q 036932 58 KNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLA 137 (790)
Q Consensus 58 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 137 (790)
..++.+.+..+ ++. +...+|.++ +|+.+.+..+ +..+-..+|.++ +|+.+++.. .++.+.+.+|.+|++|+.++
T Consensus 113 ~~l~~i~ip~~-i~~-I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-VKS-IPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-CCE-ECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-cCE-ehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 44555555432 321 222344443 4555555443 443444455443 455555553 34434444555555555555
Q ss_pred CcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEccCCCCC
Q 036932 138 LLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLSGNNLV 217 (790)
Q Consensus 138 Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls~n~l~ 217 (790)
+.+|.++ .++...|. +++|+.+.+..+ ...+....|..+.+|+.+.+..+ +..++...+...+|+.+.+. +.++
T Consensus 187 l~~n~l~-~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 187 LSKTKIT-KLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVT 260 (401)
T ss_dssp CTTSCCS-EECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCC
T ss_pred cCCCcce-EechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCcc
Confidence 5555554 34444444 345555555422 23333334444444444444432 33333322222445555552 2233
Q ss_pred CcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchh
Q 036932 218 GDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSS 297 (790)
Q Consensus 218 ~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 297 (790)
.++...|.+|++|+.+.+.++.+.. +.. ..++...|..+++|+.+++.+ .++..-..+
T Consensus 261 -~I~~~aF~~c~~L~~l~l~~~~~~~-------------------~~~-~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~a 318 (401)
T 4fdw_A 261 -NIASRAFYYCPELAEVTTYGSTFND-------------------DPE-AMIHPYCLEGCPKLARFEIPE-SIRILGQGL 318 (401)
T ss_dssp -EECTTTTTTCTTCCEEEEESSCCCC-------------------CTT-CEECTTTTTTCTTCCEECCCT-TCCEECTTT
T ss_pred -EEChhHhhCCCCCCEEEeCCccccC-------------------Ccc-cEECHHHhhCCccCCeEEeCC-ceEEEhhhh
Confidence 3444444445555544444443320 011 146666666777788887773 466556667
Q ss_pred hhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCC-CCcEEEcCCcccc
Q 036932 298 IGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLT-QLEFLYLENNKFS 364 (790)
Q Consensus 298 l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 364 (790)
|.++++|+.+.+..+ ++ .++...|.++ +|+.+++.+|.+.......|.+++ .++.+.+..+.+.
T Consensus 319 F~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 319 LGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred hcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 777888888888554 54 7777778888 888888888887766666777774 6788888776543
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.1e-14 Score=138.73 Aligned_cols=90 Identities=23% Similarity=0.208 Sum_probs=70.7
Q ss_pred ccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932 612 KYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV 690 (790)
Q Consensus 612 ~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l 690 (790)
+.|+.|++++|++++..+..++.+. |+.|+|++|++++..+..++++++|+.|||++|+|++..+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEe
Confidence 4566666666666644444455665 888888888888777777889999999999999999777777788999999999
Q ss_pred ccCcceecCCC
Q 036932 691 SFNNLSGLIPD 701 (790)
Q Consensus 691 s~N~l~g~iP~ 701 (790)
++|+++|.+|.
T Consensus 132 ~~N~~~~~~~~ 142 (177)
T 2o6r_A 132 HTNPWDCSCPR 142 (177)
T ss_dssp CSSCBCCCHHH
T ss_pred cCCCeeccCcc
Confidence 99999988773
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=8.3e-15 Score=138.30 Aligned_cols=115 Identities=21% Similarity=0.179 Sum_probs=70.1
Q ss_pred chhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccC-chhhhc
Q 036932 416 IPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVI-PHQISE 493 (790)
Q Consensus 416 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~-p~~~~~ 493 (790)
+|..+..+++|++|++++|.+++. ..+ .+++|++|++++|++++.+|..+..+++|++|++++|++++.. +..+..
T Consensus 41 i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~ 118 (168)
T 2ell_A 41 IEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKK 118 (168)
T ss_dssp CSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSS
T ss_pred HHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhc
Confidence 333344444555555555555544 222 5666666666666666556666666667777777777666432 155666
Q ss_pred CccccEEeccCccccccCC---ccccCCCCCCEEEccCCcCc
Q 036932 494 SLTLRFLLLRGNYLEGQIP---NQLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 494 l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~Ls~N~l~ 532 (790)
+++|++|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 119 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 119 LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6777777777777765444 36666777777777777665
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=1.8e-13 Score=148.43 Aligned_cols=287 Identities=13% Similarity=0.047 Sum_probs=120.1
Q ss_pred cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCC
Q 036932 53 GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTS 132 (790)
Q Consensus 53 ~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 132 (790)
+|.+|++|+.+.+..+ ++. +...+|.++.+|+.+++.++ +..+-..+|.++++|+.+.+..+ +..+...+|.++..
T Consensus 66 AF~~c~~L~~i~lp~~-i~~-I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPST-VRE-IGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTCTTEEEEECCTT-CCE-ECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HhhCCCCceEEEeCCC-ccC-cchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 4555666666666433 332 22345555555555555433 33333445555555555544433 32233334444433
Q ss_pred CCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCCCCCCccceEEeCCCCCCCCcchhhhCCCCCCEEEcc
Q 036932 133 LEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTENFLPTFQLKVLGLPNYNLKVIPSFLLHQYDLKLLDLS 212 (790)
Q Consensus 133 L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~Ls 212 (790)
++........ .+....|.++++|+.+.+..+. ..+....|. .+.+|+.+++.
T Consensus 142 ~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~-----------------------~c~~L~~i~l~ 193 (394)
T 4fs7_A 142 KEITIPEGVT---VIGDEAFATCESLEYVSLPDSM--ETLHNGLFS-----------------------GCGKLKSIKLP 193 (394)
T ss_dssp SEEECCTTCC---EECTTTTTTCTTCCEEECCTTC--CEECTTTTT-----------------------TCTTCCBCCCC
T ss_pred cccccCcccc---ccchhhhcccCCCcEEecCCcc--ceecccccc-----------------------CCCCceEEEcC
Confidence 3222222211 1222344445555555443221 222223333 34444444444
Q ss_pred CCCCCCcCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCcccc
Q 036932 213 GNNLVGDFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEG 292 (790)
Q Consensus 213 ~n~l~~~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~ 292 (790)
.+ ++ .++...+.++..|+.+.+..+...-. ........|+.+.+... +. .+....+..+..++.+.+..+...
T Consensus 194 ~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~--~~~~~~~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~- 266 (394)
T 4fs7_A 194 RN-LK-IIRDYCFAECILLENMEFPNSLYYLG--DFALSKTGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR- 266 (394)
T ss_dssp TT-CC-EECTTTTTTCTTCCBCCCCTTCCEEC--TTTTTTCCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-
T ss_pred CC-ce-EeCchhhccccccceeecCCCceEee--hhhcccCCCceEEECCC-ce-ecccccccccccceeEEcCCCcce-
Confidence 33 22 33344444455555444433322110 11112334444444322 12 333333344455555555444322
Q ss_pred ccchhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccC
Q 036932 293 YLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLS 372 (790)
Q Consensus 293 ~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 372 (790)
.....+..+..++.+..... .++...|.++.+|+.+.+..+ +..+...+|.++++|+.+++..+ ++.....+|.
T Consensus 267 i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 340 (394)
T 4fs7_A 267 IGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR 340 (394)
T ss_dssp ECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT
T ss_pred eeccccccccccceeccCce----eeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc
Confidence 33334444444444443332 233334445555555555432 33333344555555555555432 3333344455
Q ss_pred CCCCCcEEEccc
Q 036932 373 NSNELNELDISN 384 (790)
Q Consensus 373 ~l~~L~~L~Ls~ 384 (790)
++.+|+.+++..
T Consensus 341 ~c~~L~~i~lp~ 352 (394)
T 4fs7_A 341 GCTSLSNINFPL 352 (394)
T ss_dssp TCTTCCEECCCT
T ss_pred CCCCCCEEEECc
Confidence 555555555443
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.53 E-value=1.3e-14 Score=133.96 Aligned_cols=125 Identities=22% Similarity=0.228 Sum_probs=83.8
Q ss_pred CeEEEccCcccc-ccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEecc
Q 036932 402 LKVLLMSKMFLK-GNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLR 479 (790)
Q Consensus 402 L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~ 479 (790)
++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+ .+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 555555555554 45555555666677777777766665 333 66777777777777776667666667777777777
Q ss_pred CCccccc-CchhhhcCccccEEeccCccccccCC---ccccCCCCCCEEEccC
Q 036932 480 DNRFSGV-IPHQISESLTLRFLLLRGNYLEGQIP---NQLCQLRRLGVLDLSH 528 (790)
Q Consensus 480 ~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~Ls~ 528 (790)
+|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.||+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777753 33667777777777777777776555 4677777777777753
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=3.7e-16 Score=151.98 Aligned_cols=153 Identities=22% Similarity=0.274 Sum_probs=107.1
Q ss_pred cCCCCCcEEeccCCcccccCch------hhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCChhHHH
Q 036932 468 FRSSNLITLDLRDNRFSGVIPH------QISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTI 541 (790)
Q Consensus 468 ~~~~~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~ 541 (790)
.....++.++++.+.+++..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3344555555555555555554 67777777777777777775 55 6777777888888888776 55644322
Q ss_pred HHHhhcccccCCCcccccccccccccccccccccccccccCCCcccccCcceEEEEeeccceecccCcccccceEEECCC
Q 036932 542 MLLWVAGNVYLHEPYLQFFSAIFVGSIGTYYNSTFHFGHYGNGVYSIFPQLVKVEFMTKNRYELYNGSNIKYMVGLDLSC 621 (790)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 621 (790)
++.|+.|++++
T Consensus 92 ---------------------------------------------------------------------~~~L~~L~L~~ 102 (198)
T 1ds9_A 92 ---------------------------------------------------------------------ADTLEELWISY 102 (198)
T ss_dssp ---------------------------------------------------------------------HHHCSEEEEEE
T ss_pred ---------------------------------------------------------------------CCcCCEEECcC
Confidence 34677888888
Q ss_pred CcccccCChhhhhce-ecceeccCCccccccC-ccccCCCCCCEEEccCCcccccCCcc----------ccCCCCCCeEe
Q 036932 622 NQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIP-GSFSNLKWIESLDLSHNRLSGQVPPR----------LTELNFLSNFN 689 (790)
Q Consensus 622 N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip-~~l~~l~~L~~LdLs~N~lsg~ip~~----------l~~l~~L~~L~ 689 (790)
|++++ +| .++.+. |+.|++++|++++..+ ..++.+++|+.|++++|.+++.+|.. +..++.|++||
T Consensus 103 N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 103 NQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 88874 45 566665 8888888888885433 57888888999999999888887764 77788888876
Q ss_pred cccCcce
Q 036932 690 VSFNNLS 696 (790)
Q Consensus 690 ls~N~l~ 696 (790)
+|+++
T Consensus 181 --~~~i~ 185 (198)
T 1ds9_A 181 --GMPVD 185 (198)
T ss_dssp --CGGGT
T ss_pred --CcccC
Confidence 55544
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=1.5e-13 Score=132.58 Aligned_cols=124 Identities=23% Similarity=0.319 Sum_probs=77.3
Q ss_pred CEEEcCCCCCCccc-cCcCCCCCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCCCcEEEccCC
Q 036932 39 KILDLSGCGITTLQ-GLTKLKNLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSHLKVLDISYN 117 (790)
Q Consensus 39 ~~L~Ls~n~i~~~~-~l~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 117 (790)
++++++++.++.++ .+. ++|++|++++|.++.++ ..+..+++|++|+|++|.+++..+.+|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip--~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP--KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC--GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH--HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666666333 232 46666666666666332 35666666666666666666666666666666677777666
Q ss_pred CCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCC
Q 036932 118 QLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRT 167 (790)
Q Consensus 118 ~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 167 (790)
++++..|..|..+++|++|+|++|.++ .++...|..+++|+.|++++|+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCC
Confidence 666666666666666677776666666 3444456666666666666554
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=3.3e-14 Score=135.24 Aligned_cols=134 Identities=23% Similarity=0.275 Sum_probs=113.3
Q ss_pred hhhcCCCCCCEEEcCCCCCCccccCcCCC-CCCEEeCCCCCCCCCcCccccCCCCCCCEEecCCCcCcccCCcccCCCCC
Q 036932 30 VGFANLTNLKILDLSGCGITTLQGLTKLK-NLEALDLSYNNISGSSESQGVCELKNLSEFILRGINIKGHLPDCLKNLSH 108 (790)
Q Consensus 30 ~~~~~l~~L~~L~Ls~n~i~~~~~l~~l~-~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 108 (790)
..+.++++|++|++++|+++.++.+..+. +|++|++++|.+++. ..+..+++|++|++++|.+.+..+..|..+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 35778899999999999999777777666 999999999999865 46889999999999999999776666789999
Q ss_pred CcEEEccCCCCCCCChh--hhcCCCCCCEEeCcCCcCccccchh---hhhCCCCCcEEEccCCCC
Q 036932 109 LKVLDISYNQLSGTLPS--AITTLTSLEYLALLDNNFEGTFLLN---SLANHSKLEVLLLSSRTN 168 (790)
Q Consensus 109 L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~---~l~~l~~L~~L~L~~n~~ 168 (790)
|++|++++|++. .+|. .+..+++|++|++++|.++ .++.. .+..+++|+.|+++.|..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999999997 4555 7899999999999999997 44543 578899999999887753
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=7.5e-14 Score=132.96 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=107.1
Q ss_pred CeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCCCcEEeccC
Q 036932 402 LKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRD 480 (790)
Q Consensus 402 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~ 480 (790)
.+.++++++.++ .+|..+ .++|+.|++++|.+++..+..+ .+++|++|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 345555555554 233322 2578888888888887777666 788999999999999876667788999999999999
Q ss_pred CcccccCchhhhcCccccEEeccCccccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932 481 NRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536 (790)
Q Consensus 481 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p 536 (790)
|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99998877788999999999999999997777778889999999999999998766
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=9.7e-14 Score=130.95 Aligned_cols=90 Identities=24% Similarity=0.214 Sum_probs=84.1
Q ss_pred ccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932 612 KYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV 690 (790)
Q Consensus 612 ~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l 690 (790)
+.++.|+|++|++++..|..++.+. |+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..|..+++|++|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4789999999999988899999987 999999999999888888999999999999999999988888999999999999
Q ss_pred ccCcceecCCC
Q 036932 691 SFNNLSGLIPD 701 (790)
Q Consensus 691 s~N~l~g~iP~ 701 (790)
++|++++.++.
T Consensus 110 ~~N~~~c~c~~ 120 (170)
T 3g39_A 110 LNNPWDCACSD 120 (170)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCCCCCchh
Confidence 99999998764
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=3.5e-13 Score=127.53 Aligned_cols=90 Identities=24% Similarity=0.228 Sum_probs=82.6
Q ss_pred ccceEEECCCCcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEec
Q 036932 612 KYMVGLDLSCNQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNV 690 (790)
Q Consensus 612 ~~L~~L~Ls~N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~l 690 (790)
+.++.|+|++|++++..|..++.+. |+.|+|++|+|++..+..|+++++|+.|||++|+|++..|..|..+++|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4789999999999988899999987 999999999999877777899999999999999999887777999999999999
Q ss_pred ccCcceecCCC
Q 036932 691 SFNNLSGLIPD 701 (790)
Q Consensus 691 s~N~l~g~iP~ 701 (790)
++|++.+.++.
T Consensus 113 ~~N~~~c~~~~ 123 (174)
T 2r9u_A 113 YNNPWDCECRD 123 (174)
T ss_dssp CSSCBCTTBGG
T ss_pred CCCCccccccc
Confidence 99999987653
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=7e-15 Score=142.91 Aligned_cols=131 Identities=21% Similarity=0.267 Sum_probs=72.4
Q ss_pred hhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-cccccceeeccCCcCccccchhhcCCCC
Q 036932 394 WIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-NLSSLEHLYLQMNSLSGPIPIALFRSSN 472 (790)
Q Consensus 394 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~~~~ 472 (790)
.+..++. |+.|++++|.+++ +| .+..+++|++|++++|.++. +|..+ .+++|++|++++|++++ +| .+..+++
T Consensus 43 ~~~~l~~-L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKA-CKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTT-CSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCC-CCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 4444444 4444444444443 33 44445555555555555553 23333 44566666666666664 33 4555666
Q ss_pred CcEEeccCCcccccCc-hhhhcCccccEEeccCccccccCCc----------cccCCCCCCEEEccCCcCc
Q 036932 473 LITLDLRDNRFSGVIP-HQISESLTLRFLLLRGNYLEGQIPN----------QLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 473 L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~----------~l~~l~~L~~L~Ls~N~l~ 532 (790)
|++|++++|++++..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|| +|.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 6666666666664322 3456666666666666666655443 256677777776 55554
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=8.6e-13 Score=125.37 Aligned_cols=105 Identities=15% Similarity=0.167 Sum_probs=62.0
Q ss_pred CCCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCch--hhhcCccccEEec
Q 036932 425 SLNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPH--QISESLTLRFLLL 502 (790)
Q Consensus 425 ~L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L 502 (790)
+|++|++++|.+++. +....+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|. .+..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEe
Confidence 444444555444443 11115556666666666666433334466666677777777665 3343 5666677777777
Q ss_pred cCccccccCCc----cccCCCCCCEEEccCCcCc
Q 036932 503 RGNYLEGQIPN----QLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 503 ~~N~l~~~~~~----~l~~l~~L~~L~Ls~N~l~ 532 (790)
++|.++ .+|. .+..+++|+.||+++|.+.
T Consensus 121 ~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 121 LRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred cCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777776 3344 3667777777777777654
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.39 E-value=2e-11 Score=132.20 Aligned_cols=160 Identities=12% Similarity=0.166 Sum_probs=103.1
Q ss_pred ceeeeChhhhcCCC-CCCEEEcCCCCCCcc--ccCcCCCCCCEEeCCCCC---CCCCcCccccCCCCCCCEEecCCCcCc
Q 036932 23 NILFFIVVGFANLT-NLKILDLSGCGITTL--QGLTKLKNLEALDLSYNN---ISGSSESQGVCELKNLSEFILRGINIK 96 (790)
Q Consensus 23 ~~~~~~~~~~~~l~-~L~~L~Ls~n~i~~~--~~l~~l~~L~~L~Ls~n~---i~~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (790)
.++.|...+|.+++ .|+.+.+..+ ++.+ .+|.+|++|+.+.++.|. ++ .+...+|..+.+|+.+.+..+ +.
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CS
T ss_pred eeeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cc
Confidence 36778888898885 5899998764 5544 368899999999887653 43 233457788888888777654 44
Q ss_pred ccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCccccchhhhhCCCCCcEEEccCCCCCcccccCC
Q 036932 97 GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFEGTFLLNSLANHSKLEVLLLSSRTNMLSVKTEN 176 (790)
Q Consensus 97 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~ 176 (790)
.+...+|..+.+|+.+.+..+ +..+....|.++.+|+.+.+..+ ++ .+....|.+ .+|+.+.+..+. ..+....
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~-~~l~~i~ip~~~--~~i~~~a 200 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTG-TALTQIHIPAKV--TRIGTNA 200 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT-CCCSEEEECTTC--CEECTTT
T ss_pred eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eeccccccc-cceeEEEECCcc--cccccch
Confidence 455567788888888888654 44355567788888888887654 22 344445543 567777665432 2333334
Q ss_pred CCCCccceEEeCCCC
Q 036932 177 FLPTFQLKVLGLPNY 191 (790)
Q Consensus 177 ~~~~~~L~~L~l~~n 191 (790)
|..+..++.......
T Consensus 201 f~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 201 FSECFALSTITSDSE 215 (394)
T ss_dssp TTTCTTCCEEEECCS
T ss_pred hhhccccceeccccc
Confidence 555555555544433
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=2.2e-11 Score=131.80 Aligned_cols=133 Identities=11% Similarity=0.175 Sum_probs=65.2
Q ss_pred chhhhcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCC
Q 036932 295 PSSIGEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNS 374 (790)
Q Consensus 295 p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 374 (790)
..+|..+..|+.+.+..+.. .+....|.++++|+.+.+. +.+......+|.++.+|+.+.+..+ ++.+...+|.+|
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred cceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 33455555555555544332 3455555556666666654 3344344445556666666666543 443444556666
Q ss_pred CCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccc
Q 036932 375 NELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCL 436 (790)
Q Consensus 375 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 436 (790)
.+|+.+.+..+ ++..-...|.++.+ |+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~-L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTA-LNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTT-CCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCC-CCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 66666666433 44333455556655 666666655432 13455667777777666543
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.34 E-value=3.5e-12 Score=120.18 Aligned_cols=109 Identities=21% Similarity=0.175 Sum_probs=95.5
Q ss_pred CCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCc
Q 036932 426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN 505 (790)
Q Consensus 426 L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 505 (790)
.+.+++++|.++...... .++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 567888888887644333 378999999999999888889999999999999999999888888899999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcccCC
Q 036932 506 YLEGQIPNQLCQLRRLGVLDLSHNRISGSIP 536 (790)
Q Consensus 506 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p 536 (790)
++++..+..+..+++|+.|+|++|++.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9998888889999999999999999996654
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=9.6e-12 Score=117.57 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=95.2
Q ss_pred CCEEecCCccccCcccccccccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCc
Q 036932 426 LNLLSVSENCLSGPMTSSFNLSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGN 505 (790)
Q Consensus 426 L~~L~l~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 505 (790)
-+.+++++|.++..+... .++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|++|+|++|
T Consensus 14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 367888888886544333 378999999999999888889999999999999999999877777899999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcccCChhHHHHH
Q 036932 506 YLEGQIPNQLCQLRRLGVLDLSHNRISGSIPSCLTIML 543 (790)
Q Consensus 506 ~l~~~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~~~ 543 (790)
++++..+..+..+++|+.|+|++|++.+. |..+..+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~-~~~~~~l~ 128 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE-CRDIMYLR 128 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTT-BGGGHHHH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccc-cccHHHHH
Confidence 99977777799999999999999999844 43343333
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=9e-13 Score=140.71 Aligned_cols=108 Identities=20% Similarity=0.228 Sum_probs=46.8
Q ss_pred CCCEEecCCccccCcccccc--cccccceeeccCCcCccccchhh-----cCCCCCcEEeccCCccccc----Cchhhhc
Q 036932 425 SLNLLSVSENCLSGPMTSSF--NLSSLEHLYLQMNSLSGPIPIAL-----FRSSNLITLDLRDNRFSGV----IPHQISE 493 (790)
Q Consensus 425 ~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~~-----~~~~~L~~L~L~~N~l~~~----~p~~~~~ 493 (790)
+|+.|++++|.+++.....+ .+++|++|+|++|.++......+ ...++|+.|+|++|.++.. ++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 45555555554443222222 33455555555555543222222 1234555555555555431 2222234
Q ss_pred CccccEEeccCcccccc----CCccccCCCCCCEEEccCCcCc
Q 036932 494 SLTLRFLLLRGNYLEGQ----IPNQLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 494 l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~ 532 (790)
+++|++|+|++|.+++. ++..+...++|+.|+|++|.|+
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence 44455555555544332 1233334444555555555443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=1.5e-12 Score=138.88 Aligned_cols=186 Identities=20% Similarity=0.158 Sum_probs=82.9
Q ss_pred ccccEecccCCccccccchhhhcc-----cccccccCcccccccccChhhhhcCCcCcEEEccCCcCcccccccc-----
Q 036932 278 QKLLYIDMSDNRFEGYLPSSIGEM-----KALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQIFPKY----- 347 (790)
Q Consensus 278 ~~L~~L~Ls~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----- 347 (790)
+.|++|++++|.++......+... ++|++|+|++|.+...-...+...+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345555555555443333333222 3555555555555422222222334455555555555543322222
Q ss_pred cCCCCCcEEEcCCcccccc----cccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccC
Q 036932 348 MNLTQLEFLYLENNKFSGK----IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNH 423 (790)
Q Consensus 348 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 423 (790)
...++|++|++++|.++.. ++..+..+++|++|+|++|.+...... .++..+...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~---------------------~L~~~L~~~ 210 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLE---------------------LLAAQLDRN 210 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHH---------------------HHHHHGGGC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHH---------------------HHHHHHhcC
Confidence 1234555555555555421 222334455555555555555421100 123334444
Q ss_pred CCCCEEecCCccccCcccccc-----cccccceeeccCCcCccccchhhcCC---C--CCcEEe--ccCCccc
Q 036932 424 GSLNLLSVSENCLSGPMTSSF-----NLSSLEHLYLQMNSLSGPIPIALFRS---S--NLITLD--LRDNRFS 484 (790)
Q Consensus 424 ~~L~~L~l~~n~l~~~~~~~~-----~l~~L~~L~L~~n~l~~~~p~~~~~~---~--~L~~L~--L~~N~l~ 484 (790)
++|+.|++++|.+++.....+ ..++|++|+|++|.+++.....+..+ . .|+.+. +..+.++
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 556666666666554322211 34566666666666664433333222 1 166666 6666555
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=2.8e-11 Score=128.72 Aligned_cols=89 Identities=20% Similarity=0.172 Sum_probs=81.4
Q ss_pred cccceEEECCC-CcccccCChhhhhce-ecceeccCCccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeE
Q 036932 611 IKYMVGLDLSC-NQLTGGIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNF 688 (790)
Q Consensus 611 l~~L~~L~Ls~-N~l~g~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L 688 (790)
++.|+.|+|++ |+|++..|..++.+. |+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 46799999996 999988888899997 99999999999999999999999999999999999988777777777 9999
Q ss_pred ecccCcceecCC
Q 036932 689 NVSFNNLSGLIP 700 (790)
Q Consensus 689 ~ls~N~l~g~iP 700 (790)
+|++|+|.+.++
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 999999998764
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=7.6e-11 Score=125.32 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=90.4
Q ss_pred eEEECCCC-cccccCChhhhhce-ecceeccC-CccccccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecc
Q 036932 615 VGLDLSCN-QLTGGIPSEIGDLQ-IRGLNLSY-NFLSGSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVS 691 (790)
Q Consensus 615 ~~L~Ls~N-~l~g~ip~~~~~l~-L~~L~Ls~-N~l~g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls 691 (790)
..++++++ +|+ .||. ++.+. |+.|+|++ |+|++..|..|+++++|+.|||++|+|++.+|..|..+++|++|||+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35799998 898 6898 88887 99999996 99999988999999999999999999999999999999999999999
Q ss_pred cCcceecCCCCCcCCCcCcccccCCcCCCCCC
Q 036932 692 FNNLSGLIPDKGQFATFDESSYRGNLHLCGPT 723 (790)
Q Consensus 692 ~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~ 723 (790)
+|+|++..|.......+....+.+|+.-|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 99999765544322235556677888777543
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=5.8e-09 Score=112.16 Aligned_cols=121 Identities=10% Similarity=0.069 Sum_probs=67.6
Q ss_pred CCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhhhcccccccccCcccccccccChhhhhcCCc
Q 036932 249 KTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSIGEMKALIFLRLPKNNFSGELPAPLLTGCIS 328 (790)
Q Consensus 249 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~ 328 (790)
+..+..|+.+.+..+ ++ .+....+..+.+|+.+.+..+ +......+|.++++|+.+.+.++.++ .++...|.+|.+
T Consensus 236 f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCC
Confidence 344455555555443 33 444455555556666665433 33233445566666666666666665 666666666777
Q ss_pred CcEEEccCCcCcccccccccCCCCCcEEEcCCcccccccccccCCCC
Q 036932 329 LGLLDLSGNNFYGQIFPKYMNLTQLEFLYLENNKFSGKIEEGLSNSN 375 (790)
Q Consensus 329 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 375 (790)
|+.+.+..+ ++.+...+|.++++|+.+.+..+ ++.+-..+|.+++
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 777776543 44444556667777777766543 4434445555543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.00 E-value=2.4e-08 Score=107.34 Aligned_cols=270 Identities=11% Similarity=0.039 Sum_probs=111.1
Q ss_pred cCchhHhhCCCCCcEEeccCCcccccccCCCCCCCCCCEEEeecCCCCccCChhHHhhcccccEecccCCccccccchhh
Q 036932 219 DFPTWVLRNNTKLEALFLTNNSFTGNLQLPKTKHDFLHHLDVSNNNLTGKLPEDMGIILQKLLYIDMSDNRFEGYLPSSI 298 (790)
Q Consensus 219 ~ip~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~Ls~n~l~~~~p~~l 298 (790)
.|++..|.+|.+|+.+.+..+ ++......+..+ +|+.+.+..+ +. .+....|.. .+|+.+.+..+-.. .....|
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~L~~i~lp~~~~~-i~~~~F 132 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TDLDDFEFPGATTE-IGNYIF 132 (379)
T ss_dssp EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CCCSEEECCTTCCE-ECTTTT
T ss_pred ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CCcccccCCCcccc-cccccc
Confidence 344444445555555555332 332222333333 3444444322 33 344444432 35555555443211 222223
Q ss_pred hcccccccccCcccccccccChhhhhcCCcCcEEEccCCcCccc------------ccccccCCCCCcEEEcCCcccccc
Q 036932 299 GEMKALIFLRLPKNNFSGELPAPLLTGCISLGLLDLSGNNFYGQ------------IFPKYMNLTQLEFLYLENNKFSGK 366 (790)
Q Consensus 299 ~~l~~L~~L~Ls~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~------------~~~~~~~l~~L~~L~L~~n~l~~~ 366 (790)
.++ +++.+.+..+ ++ .+....|..+..++.+.+..+..... ....+.....+..+.+..... ..
T Consensus 133 ~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i 208 (379)
T 4h09_A 133 YNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TV 208 (379)
T ss_dssp TTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EE
T ss_pred ccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EE
Confidence 222 3333333322 22 33344445555565555544332111 111233334444444433221 12
Q ss_pred cccccCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhccCCCCCEEecCCccccCcccccc-c
Q 036932 367 IEEGLSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLLNHGSLNLLSVSENCLSGPMTSSF-N 445 (790)
Q Consensus 367 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~ 445 (790)
....+..+..++.+.+..+ +.......+.++.. |+.+.+..+ ++..-..++.++.+|+.+.+..+ +.......| .
T Consensus 209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~-L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~ 284 (379)
T 4h09_A 209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKA-LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG 284 (379)
T ss_dssp CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSS-CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT
T ss_pred eecccccccccceeeeccc-eeEEccccccCCcc-ceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccc
Confidence 3334445555555555433 22122333444444 555544433 22223334444555555555432 222223333 4
Q ss_pred ccccceeeccCCcCccccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEecc
Q 036932 446 LSSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLR 503 (790)
Q Consensus 446 l~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 503 (790)
+++|+.+.+.++.++..-+.+|.+|.+|+.++|..+ ++.....+|.+|.+|+.+.+.
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 455555555544444333444555555555555433 333333445555555555444
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=6.2e-09 Score=109.96 Aligned_cols=135 Identities=18% Similarity=0.143 Sum_probs=59.0
Q ss_pred cCCCCCCcEEEcccccCcCCCchhhhhccCCCeEEEccCccccccchhhhc--cCCCCCEEecCC--ccccCcc-----c
Q 036932 371 LSNSNELNELDISNNLLSGHIPHWIGNFSSDLKVLLMSKMFLKGNIPAQLL--NHGSLNLLSVSE--NCLSGPM-----T 441 (790)
Q Consensus 371 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~l~~--n~l~~~~-----~ 441 (790)
+..+++|+.|.+++|.-. .++. +. .++ |+.|++..+.+.......+. .+++|+.|+|+. |...+.. .
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~-L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPN-LKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTT-CSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCC-CcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 344455555555554211 1121 11 222 55555555554433333333 456666666642 1111110 0
Q ss_pred ccc---cccccceeeccCCcCccccchhhc---CCCCCcEEeccCCcccccC----chhhhcCccccEEeccCccccc
Q 036932 442 SSF---NLSSLEHLYLQMNSLSGPIPIALF---RSSNLITLDLRDNRFSGVI----PHQISESLTLRFLLLRGNYLEG 509 (790)
Q Consensus 442 ~~~---~l~~L~~L~L~~n~l~~~~p~~~~---~~~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~ 509 (790)
..+ .+++|++|+|.+|.+++..+..+. .+++|++|+|+.|.+++.. +..+..+++|+.|++++|.++.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 011 245566666655555433322222 2445555555555555422 2222334555555555555543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=7.9e-09 Score=109.13 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=36.8
Q ss_pred cccccceeeccCCcCc---------cccchhhcCCCCCcEEeccCCcccccCchhhhcCccccEEeccCccccccCCccc
Q 036932 445 NLSSLEHLYLQMNSLS---------GPIPIALFRSSNLITLDLRDNRFSGVIPHQISESLTLRFLLLRGNYLEGQIPNQL 515 (790)
Q Consensus 445 ~l~~L~~L~L~~n~l~---------~~~p~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l 515 (790)
.+++|+.|.+...... +.++..+..+++|+.|+|++|.-. .++. + .+++|+.|++..|.+.......+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 4567777766544321 123334445555666666555211 1111 2 24555555555555443322222
Q ss_pred c--CCCCCCEEEcc
Q 036932 516 C--QLRRLGVLDLS 527 (790)
Q Consensus 516 ~--~l~~L~~L~Ls 527 (790)
+ .+++|+.|+|+
T Consensus 214 ~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 214 LGSDLPNLEKLVLY 227 (362)
T ss_dssp HHSBCTTCCEEEEE
T ss_pred HHccCCCCcEEEEe
Confidence 2 45555555554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.50 E-value=4.6e-08 Score=93.08 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=84.9
Q ss_pred eeChhhhcCCCCCCEEEcCCC-CCC------ccccCcCCCCCCEEeCCCCCCCCCcC---ccccCCCCCCCEEecCCCcC
Q 036932 26 FFIVVGFANLTNLKILDLSGC-GIT------TLQGLTKLKNLEALDLSYNNISGSSE---SQGVCELKNLSEFILRGINI 95 (790)
Q Consensus 26 ~~~~~~~~~l~~L~~L~Ls~n-~i~------~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~L~~n~l 95 (790)
+.....+...+.|++|+|++| .|. ....+...++|++|+|++|.|..... ...+...++|++|+|++|.|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 344567888999999999999 887 23467788999999999999873221 12344557788888888887
Q ss_pred ccc----CCcccCCCCCCcEEEc--cCCCCCCC----ChhhhcCCCCCCEEeCcCCcCc
Q 036932 96 KGH----LPDCLKNLSHLKVLDI--SYNQLSGT----LPSAITTLTSLEYLALLDNNFE 144 (790)
Q Consensus 96 ~~~----~~~~~~~l~~L~~L~L--s~n~i~~~----~~~~~~~l~~L~~L~Ls~n~l~ 144 (790)
... +..++...+.|++|+| ++|.|... +...+...++|++|++++|.+.
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 643 4556677778888888 77877643 2334555677888888777664
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=6.6e-08 Score=92.02 Aligned_cols=117 Identities=15% Similarity=0.163 Sum_probs=80.8
Q ss_pred chhhhccCCCCCEEecCCc-cccCccccc----c-cccccceeeccCCcCccc----cchhhcCCCCCcEEeccCCcccc
Q 036932 416 IPAQLLNHGSLNLLSVSEN-CLSGPMTSS----F-NLSSLEHLYLQMNSLSGP----IPIALFRSSNLITLDLRDNRFSG 485 (790)
Q Consensus 416 ~~~~~~~~~~L~~L~l~~n-~l~~~~~~~----~-~l~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~L~~N~l~~ 485 (790)
+...+..+++|++|++++| .+....... + ..++|++|+|++|.+... +...+...++|++|+|++|+|+.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3445556677777777777 665432221 2 456788888888887642 34455666788888888888875
Q ss_pred c----CchhhhcCccccEEec--cCcccccc----CCccccCCCCCCEEEccCCcCc
Q 036932 486 V----IPHQISESLTLRFLLL--RGNYLEGQ----IPNQLCQLRRLGVLDLSHNRIS 532 (790)
Q Consensus 486 ~----~p~~~~~l~~L~~L~L--~~N~l~~~----~~~~l~~l~~L~~L~Ls~N~l~ 532 (790)
. +...+...++|++|+| ++|.+... +...+...++|+.|+|++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4 3455666778889998 78888754 3345556788999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1.6e-07 Score=93.92 Aligned_cols=82 Identities=22% Similarity=0.305 Sum_probs=63.5
Q ss_pred EECCCCcccccCChhh----hhce-ecceeccCCcccc--ccCccccCCCCCCEEEccCCcccccCCccccCCC--CCCe
Q 036932 617 LDLSCNQLTGGIPSEI----GDLQ-IRGLNLSYNFLSG--SIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELN--FLSN 687 (790)
Q Consensus 617 L~Ls~N~l~g~ip~~~----~~l~-L~~L~Ls~N~l~g--~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~--~L~~ 687 (790)
++++.|... .++..+ ..+. |+.|+||+|+|++ .+|..++.+++|+.||||+|+|++. ..+..+. .|+.
T Consensus 148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEE 224 (267)
T ss_dssp CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSE
T ss_pred ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcce
Confidence 778888543 333322 3344 9999999999998 5678888999999999999999976 3344444 8999
Q ss_pred EecccCcceecCCC
Q 036932 688 FNVSFNNLSGLIPD 701 (790)
Q Consensus 688 L~ls~N~l~g~iP~ 701 (790)
|+|++|++++.+|.
T Consensus 225 L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 225 LWLDGNSLCDTFRD 238 (267)
T ss_dssp EECTTSTTGGGCSS
T ss_pred EEccCCcCccccCc
Confidence 99999999988874
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=6.3e-07 Score=89.51 Aligned_cols=78 Identities=27% Similarity=0.282 Sum_probs=65.4
Q ss_pred ccccceEEECCCCcccc--cCChhhhhce-ecceeccCCccccccCccccCCC--CCCEEEccCCcccccCCc-------
Q 036932 610 NIKYMVGLDLSCNQLTG--GIPSEIGDLQ-IRGLNLSYNFLSGSIPGSFSNLK--WIESLDLSHNRLSGQVPP------- 677 (790)
Q Consensus 610 ~l~~L~~L~Ls~N~l~g--~ip~~~~~l~-L~~L~Ls~N~l~g~ip~~l~~l~--~L~~LdLs~N~lsg~ip~------- 677 (790)
.++.|+.|+||+|+|++ .+|..++.+. |+.|+|++|+|++. ..+..++ +|++|+|++|.+++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 47899999999999998 6677777887 99999999999976 3445555 999999999999988773
Q ss_pred cccCCCCCCeEe
Q 036932 678 RLTELNFLSNFN 689 (790)
Q Consensus 678 ~l~~l~~L~~L~ 689 (790)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 367788998886
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.72 E-value=1.6e-05 Score=73.49 Aligned_cols=84 Identities=10% Similarity=-0.066 Sum_probs=66.5
Q ss_pred cccceeeccCCcCccccchhhcCCCCCcEEeccCCc-ccccCchhhhcC----ccccEEeccCcc-ccccCCccccCCCC
Q 036932 447 SSLEHLYLQMNSLSGPIPIALFRSSNLITLDLRDNR-FSGVIPHQISES----LTLRFLLLRGNY-LEGQIPNQLCQLRR 520 (790)
Q Consensus 447 ~~L~~L~L~~n~l~~~~p~~~~~~~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~~~~l~~l~~ 520 (790)
..|+.||+++|.++..--..+..|++|+.|+|++|. +++..-..+..+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468899999998876555667889999999999995 775544556653 479999999984 87665566788999
Q ss_pred CCEEEccCCc
Q 036932 521 LGVLDLSHNR 530 (790)
Q Consensus 521 L~~L~Ls~N~ 530 (790)
|+.|++++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999986
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.49 E-value=5.8e-05 Score=69.67 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=21.5
Q ss_pred CCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCc
Q 036932 107 SHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNN 142 (790)
Q Consensus 107 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 142 (790)
.+|++||++++.++...-..+..+++|++|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 456666666666654444455566666666666663
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.30 E-value=0.00028 Score=62.09 Aligned_cols=59 Identities=22% Similarity=0.165 Sum_probs=45.7
Q ss_pred ceeccCCccc-cccCccccCCCCCCEEEccCCcccccCCccccCCCCCCeEecccCcceecC
Q 036932 639 GLNLSYNFLS-GSIPGSFSNLKWIESLDLSHNRLSGQVPPRLTELNFLSNFNVSFNNLSGLI 699 (790)
Q Consensus 639 ~L~Ls~N~l~-g~ip~~l~~l~~L~~LdLs~N~lsg~ip~~l~~l~~L~~L~ls~N~l~g~i 699 (790)
.++-+++.++ ..+|..+. ++|+.|||++|+|+...+..|..+++|++|+|++|++.+.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 4666666665 35564433 46889999999999888888899999999999999998755
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.21 E-value=0.00023 Score=66.98 Aligned_cols=115 Identities=13% Similarity=0.078 Sum_probs=71.7
Q ss_pred hhhhcCCCCCCEEEcCCC-CCC------ccccCcCCCCCCEEeCCCCCCCCCcC---ccccCCCCCCCEEecCCCcCccc
Q 036932 29 VVGFANLTNLKILDLSGC-GIT------TLQGLTKLKNLEALDLSYNNISGSSE---SQGVCELKNLSEFILRGINIKGH 98 (790)
Q Consensus 29 ~~~~~~l~~L~~L~Ls~n-~i~------~~~~l~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~L~~n~l~~~ 98 (790)
...+.+-+.|++|+|+++ +|. +.+++...+.|+.|+|++|.|.+... ..++..-+.|++|+|++|.|...
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 345667788999999885 776 23567788889999999998863221 12333456777777777777632
Q ss_pred ----CCcccCCCCCCcEEEccCCCC---CCC----ChhhhcCCCCCCEEeCcCCcC
Q 036932 99 ----LPDCLKNLSHLKVLDISYNQL---SGT----LPSAITTLTSLEYLALLDNNF 143 (790)
Q Consensus 99 ----~~~~~~~l~~L~~L~Ls~n~i---~~~----~~~~~~~l~~L~~L~Ls~n~l 143 (790)
+.+++...+.|++|+|++|.. ... +...+..-+.|+.|+++.|.+
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 344556666677777765432 211 222344455666666665543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.02 E-value=0.00058 Score=64.20 Aligned_cols=85 Identities=12% Similarity=0.104 Sum_probs=44.4
Q ss_pred cccceeeccCCcCccc----cchhhcCCCCCcEEeccCCcccccCc----hhhhcCccccEEeccCc---cccc----cC
Q 036932 447 SSLEHLYLQMNSLSGP----IPIALFRSSNLITLDLRDNRFSGVIP----HQISESLTLRFLLLRGN---YLEG----QI 511 (790)
Q Consensus 447 ~~L~~L~L~~n~l~~~----~p~~~~~~~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~N---~l~~----~~ 511 (790)
+.|+.|+|++|.+... +.+.+...+.|+.|+|++|.|+.... .++.....|++|+|++| .+.. .+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 3455555555555421 23344445566666666666653322 23334455666666644 2222 13
Q ss_pred CccccCCCCCCEEEccCCcC
Q 036932 512 PNQLCQLRRLGVLDLSHNRI 531 (790)
Q Consensus 512 ~~~l~~l~~L~~L~Ls~N~l 531 (790)
.+.+..-+.|+.|+++.|.+
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 34455567777888876654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.83 E-value=0.016 Score=50.66 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=36.5
Q ss_pred EEecCCCcCc-ccCCcccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCcCCcCc
Q 036932 87 EFILRGINIK-GHLPDCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALLDNNFE 144 (790)
Q Consensus 87 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 144 (790)
.++.+++.++ ..+|..+. ++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666554 23343322 35777888888877666667777777888888777664
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.54 E-value=4.2 Score=33.12 Aligned_cols=47 Identities=19% Similarity=0.095 Sum_probs=34.3
Q ss_pred cCceeeeChhhhcCCCCCCEEEcCCCCCCcc--ccCcCCCCCCEEeCCCC
Q 036932 21 ASNILFFIVVGFANLTNLKILDLSGCGITTL--QGLTKLKNLEALDLSYN 68 (790)
Q Consensus 21 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~l~~l~~L~~L~Ls~n 68 (790)
|..++.|...+|.+++.|+.+.+-.+ ++.+ .+|.+|.+|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 55677888888888888888888765 4433 35778888888777654
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=57.99 E-value=9 Score=25.57 Aligned_cols=24 Identities=0% Similarity=-0.169 Sum_probs=10.2
Q ss_pred hhhhhHHHHHHHHHHHHhhhhccc
Q 036932 756 YWSFGASYVTVILGLFAILWINSN 779 (790)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~ 779 (790)
..++..|.+++++++.++++|.+|
T Consensus 13 A~gVVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 13 AAGVIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeehHHHHHHHHHHHHHHHHhhh
Confidence 333444444444444444444443
No 167
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=54.25 E-value=9.8 Score=25.42 Aligned_cols=23 Identities=4% Similarity=-0.005 Sum_probs=9.8
Q ss_pred hhhhHHHHHHHHHHHHhhhhccc
Q 036932 757 WSFGASYVTVILGLFAILWINSN 779 (790)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~ 779 (790)
.++..|.++++++++++++|.+|
T Consensus 15 ~gVVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 15 TGMVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eehhHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444443
No 168
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=45.97 E-value=21 Score=28.88 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=17.9
Q ss_pred cccCCCCCCcEEEccCCCCCCCChhhhcCCCCCCEEeCc
Q 036932 101 DCLKNLSHLKVLDISYNQLSGTLPSAITTLTSLEYLALL 139 (790)
Q Consensus 101 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 139 (790)
.+|.++++|+.+.+..+ ++.+...+|.+|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34555555555555433 333334445555555555443
No 169
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=33.86 E-value=26 Score=23.38 Aligned_cols=8 Identities=0% Similarity=-0.201 Sum_probs=3.1
Q ss_pred HHhhhhcc
Q 036932 771 FAILWINS 778 (790)
Q Consensus 771 ~~~~~~~~ 778 (790)
+++.+|.+
T Consensus 29 l~~~~~~R 36 (44)
T 2jwa_A 29 VVFGILIK 36 (44)
T ss_dssp HHHHHHHH
T ss_pred HHHHhhee
Confidence 33334444
No 170
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=30.25 E-value=46 Score=21.56 Aligned_cols=9 Identities=11% Similarity=-0.053 Sum_probs=3.6
Q ss_pred hhhhHHHHH
Q 036932 757 WSFGASYVT 765 (790)
Q Consensus 757 ~~~~~~~~~ 765 (790)
.+++.|++.
T Consensus 17 ~~vv~Gv~l 25 (41)
T 2k9y_A 17 GGVAVGVVL 25 (41)
T ss_dssp HHHHHHHHH
T ss_pred eehhHHHHH
Confidence 333444443
No 171
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=26.70 E-value=47 Score=21.33 Aligned_cols=16 Identities=6% Similarity=-0.216 Sum_probs=7.1
Q ss_pred hhhhHHHHHHHHHHHH
Q 036932 757 WSFGASYVTVILGLFA 772 (790)
Q Consensus 757 ~~~~~~~~~~~~~~~~ 772 (790)
.++++|.++++.++++
T Consensus 14 AGiVvG~v~gv~li~~ 29 (38)
T 2k1k_A 14 VAVIFGLLLGAALLLG 29 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 3444555444443333
No 172
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=24.23 E-value=43 Score=20.57 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHhhhhcc
Q 036932 758 SFGASYVTVILGLFAILWINS 778 (790)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~ 778 (790)
.+.+|.+++|.+.-..+.|++
T Consensus 11 t~i~gl~vif~~lg~tflywr 31 (40)
T 2l9u_A 11 TVIAGLVVIFMMLGGTFLYWR 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCceeEEEc
Confidence 455566665655555555543
Done!