BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036934
(361 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 24/121 (19%)
Query: 70 ATVLYSHGNAADLGQMF--ELFVELSNRLRVNLMGYDYSGYGQSTGKDLQMLASLDCTRS 127
A +L HGN++ G +F +L E+ + RV + D G+G+ST ++D RS
Sbjct: 25 APLLMIHGNSSS-GAIFAPQLEGEIGKKWRV--IAPDLPGHGKST-------DAIDPDRS 74
Query: 128 FELRSWLLVPQYISYIDAAYKCLKEQYGVKDEQLILYGQSVGSGPTVDLASRLPNLRGVV 187
+ + Y DA + ++ Q G+ D +++G S+G +++ +R P +RG++
Sbjct: 75 YSMEG---------YADAMTEVMQ-QLGIAD--AVVFGWSLGGHIGIEMIARYPEMRGLM 122
Query: 188 L 188
+
Sbjct: 123 I 123
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 24/121 (19%)
Query: 70 ATVLYSHGNAADLGQMF--ELFVELSNRLRVNLMGYDYSGYGQSTGKDLQMLASLDCTRS 127
A +L HGN++ G +F +L E+ + RV + D G+G+ST ++D RS
Sbjct: 25 APLLMIHGNSSS-GAIFAPQLEGEIGKKWRV--IAPDLPGHGKST-------DAIDPDRS 74
Query: 128 FELRSWLLVPQYISYIDAAYKCLKEQYGVKDEQLILYGQSVGSGPTVDLASRLPNLRGVV 187
+ + Y DA + ++ Q G+ D +++G S+G +++ +R P +RG++
Sbjct: 75 YSMEG---------YADAMTEVMQ-QLGIAD--AVVFGWSLGGHIGIEMIARYPEMRGLM 122
Query: 188 L 188
+
Sbjct: 123 I 123
>pdb|4G8B|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8B|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant Complexed With N-hexanoyl Homoserine
Lactone
pdb|4G8D|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
pdb|4G8D|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
S102g Mutant
Length = 279
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 24/121 (19%)
Query: 70 ATVLYSHGNAADLGQMF--ELFVELSNRLRVNLMGYDYSGYGQSTGKDLQMLASLDCTRS 127
A +L HGN++ G +F +L E+ + RV + D G+G+ST ++D RS
Sbjct: 25 APLLMIHGNSSS-GAIFAPQLEGEIGKKWRV--IAPDLPGHGKST-------DAIDPDRS 74
Query: 128 FELRSWLLVPQYISYIDAAYKCLKEQYGVKDEQLILYGQSVGSGPTVDLASRLPNLRGVV 187
+ + Y DA + ++ Q G+ D +++G +G +++ +R P +RG++
Sbjct: 75 YSMEG---------YADAMTEVMQ-QLGIAD--AVVFGWGLGGHIGIEMIARYPEMRGLM 122
Query: 188 L 188
+
Sbjct: 123 I 123
>pdb|3E0X|A Chain A, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
pdb|3E0X|B Chain B, The Crystal Structure Of A Lipase-Esterase Related Protein
From Clostridium Acetobutylicum Atcc 824
Length = 245
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 65/156 (41%), Gaps = 31/156 (19%)
Query: 61 VHIKHPKSTATVLYSHGNAADLGQMFELFVELSNRLR-VNLMGYDYSGYGQSTGKDLQML 119
VH+ + KS T+L+ HG+ +L ++F EL L N + D G+G+S G+
Sbjct: 8 VHVGNKKSPNTLLFVHGSGCNL----KIFGELEKYLEDYNCILLDLKGHGESKGQ----- 58
Query: 120 ASLDCTRSFELRSWLLVPQYISYIDAAYKCLKEQYGVKDEQLI-LYGQSVGSGPTVDLA- 177
C + YID + K ++ I L G S G + +A
Sbjct: 59 ----CPSTV-----------YGYIDNVANFITNSEVTKHQKNITLIGYSXGGAIVLGVAL 103
Query: 178 SRLPNLRGVVLHSPILSGMRVLYPVKRTYWFDIYKN 213
+LPN+R VV LSG + + + IY N
Sbjct: 104 KKLPNVRKVV----SLSGGARFDKLDKDFXEKIYHN 135
>pdb|3VP7|A Chain A, Crystal Structure Of The Beta-Alpha Repeated,
Autophagy-Specific (Bara) Domain Of Vps30ATG6
Length = 220
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 70 ATVLYSHGNAADLGQMFELFVELSNRLRVNLMGYDYSGYGQSTGKDLQMLASLDCTRSFE 129
+ V + NAA LGQ+ L ++ L++NL+ Y+ G + +M+ S++ S
Sbjct: 30 SVVPWKEINAA-LGQLILLLATINKNLKINLVDYELQPMGSFSKIKKRMVNSVEYNNSTT 88
Query: 130 LR--SWLLVPQY 139
WL++P Y
Sbjct: 89 NAPGDWLILPVY 100
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 199 LYPVKRTYWFDIYKNIDK-IGMVNCPVMVVHGTTDEVVDCSHGKQLYELC 247
++P R W D + D+ I + +++HG D+VV S +L EL
Sbjct: 190 MFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELI 239
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 199 LYPVKRTYWFDIYKNIDK-IGMVNCPVMVVHGTTDEVVDCSHGKQLYELC 247
++P R W D + D+ I + +++HG D+VV S +L EL
Sbjct: 190 MFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGELI 239
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 220 VNCPVMVVHGTTDEVVDCSHGKQLYELCKVKYEPLWINGGGHCNLELYPEFIRHLKKFV 278
V CP ++VHG D +V H +++ K L G + +L EF + + F+
Sbjct: 195 VQCPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFL 253
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 220 VNCPVMVVHGTTDEVVDCSHGKQLYELCKVKYEPLWINGGGHCNLELYPEFIRHLKKFV 278
V CP ++VHG D +V H +++ K L G + +L EF + + F+
Sbjct: 195 VQCPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFL 253
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 220 VNCPVMVVHGTTDEVVDCSHGKQLYELCKVKYEPLWINGGGHCNLELYPEFIRHLKKFV 278
V CP ++VHG D +V H +++ K L G + +L EF + + F+
Sbjct: 195 VQCPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFL 253
>pdb|2WTM|A Chain A, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|B Chain B, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|C Chain C, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTM|D Chain D, Est1e From Butyrivibrio Proteoclasticus
pdb|2WTN|A Chain A, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
pdb|2WTN|B Chain B, Ferulic Acid Bound To Est1e From Butyrivibrio
Proteoclasticus
Length = 251
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 15/65 (23%)
Query: 223 PVMVVHGTTDEVV----DCSHGKQLYELCKVKYEPLWINGGGHC---NLELYPEFIRHLK 275
PV++VHG DE V + KQ Y+ CK+ + I G HC +LEL E + K
Sbjct: 191 PVLIVHGDQDEAVPYEASVAFSKQ-YKNCKL----VTIPGDTHCYDHHLELVTEAV---K 242
Query: 276 KFVLS 280
+F+L
Sbjct: 243 EFMLE 247
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 24 LVTDESCGGRLYIPEVPRRDNVDVLKVRTRRGTDIVAVHIKHPKSTAT 71
+ TD SC R + ++ N LKV T RG +P+ TA+
Sbjct: 183 MQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTAS 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,028,811
Number of Sequences: 62578
Number of extensions: 404785
Number of successful extensions: 876
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 871
Number of HSP's gapped (non-prelim): 13
length of query: 361
length of database: 14,973,337
effective HSP length: 100
effective length of query: 261
effective length of database: 8,715,537
effective search space: 2274755157
effective search space used: 2274755157
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)