BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036936
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 36.6 bits (83), Expect = 0.003, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 18/99 (18%)
Query: 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILM-- 58
MI+ P FGDQ N L VL IG +GV+ GVL KE + KA+ + M
Sbjct: 368 MISRPFFGDQGLNTILTESVLEIG--VGVDN----------GVLT-KESIKKALELTMSS 414
Query: 59 DEGGERNDRRKRGREFHIMAKRATEETGSSSLMIKLLIQ 97
++GG + + +E A +A E+ G+S++ LIQ
Sbjct: 415 EKGGIMRQKIVKLKE---SAFKAVEQNGTSAMDFTTLIQ 450
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 15/100 (15%)
Query: 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDE 60
M+ WP F DQ + + I IG EI VK+E++ K IN ++
Sbjct: 394 MLCWPFFADQPTDCRFICNEWEIG--------------MEIDTNVKREELAKLINEVI-A 438
Query: 61 GGERNDRRKRGREFHIMAKRATEETGSSSLMIKLLIQDIM 100
G + +++ E A+ T G S + + +I+D++
Sbjct: 439 GDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDE 60
+I P FGDQ N +++ VL IG RI E GV K + IL E
Sbjct: 366 LICRPFFGDQRLNGRMVEDVLEIGVRI------------EGGVFTKSGLMSCFDQILSQE 413
Query: 61 GGERNDRRKRGREFHIMAKRATEETGSSSLMIKLLIQDIMQP 102
G++ R+ R A RA GSS+ L+ + +P
Sbjct: 414 KGKK--LRENLRALRETADRAVGPKGSSTENFITLVDLVSKP 453
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDE 60
++TWP++ +Q N +V+ +G +G+ V D+ K ++ V E++ K + LMD
Sbjct: 373 ILTWPIYAEQQLNAFRLVKEWGVG--LGLRV--DYRKGSDV---VAAEEIEKGLKDLMD- 424
Query: 61 GGERNDRRKRGREFHIMAKRATEETGSSSLMIKLLIQDI 99
+ + K+ +E M++ A + GSS + + LI DI
Sbjct: 425 --KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDE 60
++TWP++ +Q N +V+ +G +G+ V D+ K ++ V E++ K + LMD
Sbjct: 373 ILTWPIYAEQQLNAFRLVKEWGVG--LGLRV--DYRKGSDV---VAAEEIEKGLKDLMD- 424
Query: 61 GGERNDRRKRGREFHIMAKRATEETGSSSLMIKLLIQDI 99
+ + K+ +E M++ A + GSS + + LI DI
Sbjct: 425 --KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 32.3 bits (72), Expect = 0.067, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDE 60
+I WPL+ +Q N L+ + + R + + G LV++E+V + + LM E
Sbjct: 380 LIAWPLYAEQKMNAVLLSEDIRAALR---------PRAGDDG-LVRREEVARVVKGLM-E 428
Query: 61 GGERNDRRKRGREFHIMAKRATEETGSSSLMIKLL 95
G E R + +E A R ++ G+S+ + L+
Sbjct: 429 GEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLV 463
>pdb|1NNV|A Chain A, The Solution Structure Of Hi1450
Length = 110
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 21 LNIGERIGVE-VPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERND--------RRKRG 71
L ER GVE V EEEIGVL+ E+ + L++E E +D R+
Sbjct: 42 LQFEERGGVEFVETADDWEEEIGVLIDPEEYAEVWVGLVNEQDEMDDVFAKFLISHREED 101
Query: 72 REFHIMAKR 80
REFH++ K+
Sbjct: 102 REFHVIWKK 110
>pdb|2DEP|A Chain A, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
pdb|2DEP|B Chain B, Crystal Structure Of Xylanase B From Clostridium
Stercorarium F9
Length = 356
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 45 VKKEDVVKAINILMDEGGERND--RRKRGREFHIMAKRATEETGSSSLMIKLLIQD 98
+K DVV + D GG RN + G E+ +A RAT E G S IKL I D
Sbjct: 138 IKSWDVVNEVIEPNDPGGMRNSPWYQITGTEYIEVAFRATREAGGSD--IKLYIND 191
>pdb|1HDG|O Chain O, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
pdb|1HDG|Q Chain Q, The Crystal Structure Of Holo-glyceraldehyde-3-phosphate
Dehydrogenase From The Hyperthermophilic Bacterium
Thermotoga Maritima At 2.5 Angstroms Resolution
Length = 332
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 27 IGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGE 63
+ + VP G ++ VLV+KE V+ +N +M E E
Sbjct: 229 MAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATE 265
>pdb|2X42|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Alpha-D-Glucose
Length = 721
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 24 GERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHI 76
G I ++P +F E+EI L KK DV A+ ++ GE DR+ +F++
Sbjct: 421 GTIIKPKLPENFLSEKEIHKLAKKNDV--AVIVISRISGEGYDRKPVKGDFYL 471
>pdb|2PN1|A Chain A, Crystal Structure Of Carbamoylphosphate Synthase Large
Subunit (Split Gene In Mj) (Zp_00538348.1) From
Exiguobacterium Sp. 255-15 At 2.00 A Resolution
Length = 331
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 13 NEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKA 53
N LIVQ L +G+ +GV+ +D + + +K++ +A
Sbjct: 181 NTDLIVQELLVGQELGVDAYVDLISGKVTSIFIKEKLTXRA 221
>pdb|2X40|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glycerol
pdb|2X41|A Chain A, Structure Of Beta-Glucosidase 3b From Thermotoga
Neapolitana In Complex With Glucose
Length = 721
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 24 GERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHI 76
G I ++P +F E+EI L KK DV A+ ++ GE DR+ +F++
Sbjct: 421 GTIIKPKLPENFLSEKEIHKLAKKNDV--AVIVISRISGEGYDRKPVKGDFYL 471
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,302,224
Number of Sequences: 62578
Number of extensions: 121282
Number of successful extensions: 331
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 20
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)