Query 036936
Match_columns 110
No_of_seqs 167 out of 1054
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 06:53:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02534 UDP-glycosyltransfera 99.9 4.1E-23 8.8E-28 164.7 10.5 103 1-103 385-488 (491)
2 PLN02555 limonoid glucosyltran 99.9 6.3E-23 1.4E-27 163.3 10.4 93 1-102 378-470 (480)
3 PLN02210 UDP-glucosyl transfer 99.9 2.1E-22 4.6E-27 159.3 10.5 90 1-100 365-454 (456)
4 PLN03015 UDP-glucosyl transfer 99.9 3.5E-22 7.5E-27 158.7 10.1 91 1-100 376-467 (470)
5 PLN02173 UDP-glucosyl transfer 99.9 4.1E-22 8.8E-27 157.6 10.5 90 1-100 358-447 (449)
6 PLN02207 UDP-glycosyltransfera 99.9 7.2E-22 1.6E-26 156.8 10.3 95 1-103 373-467 (468)
7 PLN02410 UDP-glucoronosyl/UDP- 99.9 1.5E-21 3.2E-26 154.4 10.5 87 1-102 365-451 (451)
8 PLN00164 glucosyltransferase; 99.9 3.5E-21 7.6E-26 153.2 10.6 95 1-103 380-475 (480)
9 PLN03007 UDP-glucosyltransfera 99.9 4.2E-21 9.2E-26 152.7 10.2 96 1-102 386-481 (482)
10 PLN02992 coniferyl-alcohol glu 99.8 1.1E-20 2.3E-25 150.6 10.0 89 1-101 379-469 (481)
11 PLN02448 UDP-glycosyltransfera 99.8 1.7E-20 3.7E-25 148.4 10.7 94 1-102 364-458 (459)
12 PLN02152 indole-3-acetate beta 99.8 2.3E-20 5E-25 147.8 10.0 88 1-100 368-455 (455)
13 PLN02863 UDP-glucoronosyl/UDP- 99.8 3.3E-20 7.1E-25 147.7 9.7 89 1-102 384-472 (477)
14 PLN02554 UDP-glycosyltransfera 99.8 3.2E-20 6.9E-25 147.7 9.5 97 1-102 383-479 (481)
15 PLN02167 UDP-glycosyltransfera 99.8 1.2E-19 2.5E-24 144.3 10.0 93 1-102 381-473 (475)
16 PLN02208 glycosyltransferase f 99.8 2.2E-19 4.9E-24 141.8 9.5 88 1-102 352-440 (442)
17 PLN02764 glycosyltransferase f 99.8 1.3E-18 2.9E-23 137.8 10.0 92 1-106 358-450 (453)
18 PLN02562 UDP-glycosyltransfera 99.8 1.5E-18 3.3E-23 137.1 9.4 80 1-100 369-448 (448)
19 PLN00414 glycosyltransferase f 99.7 2.1E-17 4.5E-22 130.7 9.2 90 1-104 353-443 (446)
20 PLN03004 UDP-glycosyltransfera 99.7 7E-18 1.5E-22 133.6 6.5 76 1-90 375-450 (451)
21 PLN02670 transferase, transfer 99.6 2.5E-15 5.4E-20 119.7 9.2 90 1-105 380-469 (472)
22 PF00201 UDPGT: UDP-glucoronos 99.2 2.8E-11 6E-16 95.8 5.3 63 1-81 364-426 (500)
23 PHA03392 egt ecdysteroid UDP-g 99.0 3.3E-09 7.1E-14 85.4 10.0 82 1-103 387-468 (507)
24 KOG1192 UDP-glucuronosyl and U 98.9 8.4E-09 1.8E-13 81.3 8.2 61 1-79 377-437 (496)
25 COG1819 Glycosyl transferases, 98.4 1.6E-06 3.5E-11 68.2 8.6 80 1-103 323-402 (406)
26 TIGR01426 MGT glycosyltransfer 98.3 4.6E-06 1E-10 64.2 8.8 76 1-99 314-389 (392)
27 cd03784 GT1_Gtf_like This fami 98.1 1.5E-05 3.3E-10 61.2 6.9 60 1-79 327-386 (401)
28 PRK12446 undecaprenyldiphospho 96.1 0.0091 2E-07 46.1 4.4 54 1-71 275-333 (352)
29 COG0707 MurG UDP-N-acetylgluco 95.0 0.27 5.9E-06 38.4 8.9 52 8-80 286-337 (357)
30 PRK00726 murG undecaprenyldiph 94.3 0.39 8.5E-06 36.2 8.2 74 2-97 276-353 (357)
31 PF13528 Glyco_trans_1_3: Glyc 94.3 0.052 1.1E-06 40.3 3.3 43 1-57 273-317 (318)
32 PF04101 Glyco_tran_28_C: Glyc 86.5 0.29 6.3E-06 33.2 0.7 45 1-59 95-143 (167)
33 cd03785 GT1_MurG MurG is an N- 85.2 2.4 5.2E-05 31.6 5.2 41 7-62 285-325 (350)
34 TIGR01133 murG undecaprenyldip 85.1 2.5 5.4E-05 31.4 5.2 40 8-62 283-322 (348)
35 TIGR00661 MJ1255 conserved hyp 81.9 1.2 2.6E-05 33.5 2.4 28 1-29 270-299 (321)
36 PRK13608 diacylglycerol glucos 80.0 12 0.00026 29.0 7.4 69 5-99 301-369 (391)
37 TIGR00215 lpxB lipid-A-disacch 72.2 9.9 0.00021 29.6 5.1 65 10-93 311-380 (385)
38 TIGR03492 conserved hypothetic 64.7 54 0.0012 25.7 7.8 45 1-62 318-365 (396)
39 PRK13609 diacylglycerol glucos 63.7 60 0.0013 24.6 7.8 71 5-101 301-371 (380)
40 COG4575 ElaB Uncharacterized c 62.8 5.7 0.00012 25.9 1.7 27 61-87 36-62 (104)
41 PF06785 UPF0242: Uncharacteri 55.3 7.7 0.00017 30.5 1.6 65 1-76 28-99 (401)
42 PLN02605 monogalactosyldiacylg 54.8 95 0.0021 23.8 8.2 40 2-59 306-346 (382)
43 PF11740 KfrA_N: Plasmid repli 54.6 31 0.00068 22.0 4.2 47 45-102 1-47 (120)
44 PRK05749 3-deoxy-D-manno-octul 50.6 1.2E+02 0.0025 23.5 8.2 16 46-62 374-389 (425)
45 PRK09814 beta-1,6-galactofuran 49.3 66 0.0014 24.2 5.9 44 47-96 287-330 (333)
46 smart00526 H15 Domain in histo 47.2 27 0.00058 20.1 2.8 15 84-98 21-35 (66)
47 PF03693 RHH_2: Uncharacterise 45.8 46 0.00099 20.4 3.7 50 46-102 29-78 (80)
48 PF04558 tRNA_synt_1c_R1: Glut 43.3 25 0.00055 24.5 2.6 16 44-59 116-131 (164)
49 PF13524 Glyco_trans_1_2: Glyc 41.9 74 0.0016 18.8 5.0 16 46-62 48-63 (92)
50 PRK00025 lpxB lipid-A-disaccha 39.0 1.7E+02 0.0036 22.0 6.8 48 44-96 325-372 (380)
51 PF00534 Glycos_transf_1: Glyc 35.8 43 0.00094 21.9 2.8 14 46-59 144-157 (172)
52 PF05673 DUF815: Protein of un 33.4 2.1E+02 0.0045 21.5 6.3 61 22-101 184-247 (249)
53 PLN02859 glutamine-tRNA ligase 32.7 1E+02 0.0023 27.0 5.0 58 44-102 118-181 (788)
54 COG1400 SEC65 Signal recogniti 32.2 24 0.00051 22.6 0.9 42 1-58 4-45 (93)
55 KOG2635 Medium subunit of clat 31.3 81 0.0018 25.9 3.9 24 65-88 157-180 (512)
56 PF06825 HSBP1: Heat shock fac 31.2 83 0.0018 18.0 3.0 50 48-103 2-51 (54)
57 PF04752 ChaC: ChaC-like prote 28.9 55 0.0012 23.1 2.4 40 70-109 127-167 (178)
58 PF03832 WSK: WSK motif; Inte 25.6 49 0.0011 16.8 1.2 15 84-98 2-16 (31)
59 COG0676 Uncharacterized enzyme 25.4 30 0.00065 26.5 0.6 12 2-13 77-88 (287)
60 PRK03745 signal recognition pa 25.2 38 0.00083 21.9 1.0 41 1-57 4-44 (100)
61 COG5570 Uncharacterized small 23.5 31 0.00067 19.8 0.2 21 89-109 14-34 (57)
62 PRK04156 gltX glutamyl-tRNA sy 22.6 99 0.0022 26.0 3.1 47 49-98 25-72 (567)
63 cd00073 H15 linker histone 1 a 22.4 1.5E+02 0.0032 18.1 3.3 15 84-98 21-35 (88)
64 PF00538 Linker_histone: linke 20.8 1E+02 0.0023 18.2 2.3 15 84-98 19-33 (77)
No 1
>PLN02534 UDP-glycosyltransferase
Probab=99.89 E-value=4.1e-23 Score=164.75 Aligned_cols=103 Identities=55% Similarity=0.953 Sum_probs=85.0
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDE-GGERNDRRKRGREFHIMAK 79 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~-~eeg~~~r~~a~~l~~~~~ 79 (110)
||+||+++||+.|+++++++||||+++....+..|+.++..+..+++++|+++|+++|.. +++|+++|+||++|+++++
T Consensus 385 ~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~ 464 (491)
T PLN02534 385 MITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMAR 464 (491)
T ss_pred EEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999643222221110001258999999999999931 5789999999999999999
Q ss_pred HhhhcCCcHHHHHHHHHHHHhCCC
Q 036936 80 RATEETGSSSLMIKLLIQDIMQPP 103 (110)
Q Consensus 80 ~a~~~gGsS~~~l~~~v~~l~~~~ 103 (110)
+|+.+||||+.||++||++++...
T Consensus 465 ~Av~~GGSS~~nl~~fv~~i~~~~ 488 (491)
T PLN02534 465 KAMELGGSSHINLSILIQDVLKQQ 488 (491)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHh
Confidence 999999999999999999998653
No 2
>PLN02555 limonoid glucosyltransferase
Probab=99.89 E-value=6.3e-23 Score=163.30 Aligned_cols=93 Identities=19% Similarity=0.336 Sum_probs=83.8
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+|+||+.|++++++.||+|+++..... ..+.+++++|+++|+++|. +++|+++|+||++|++++++
T Consensus 378 ~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~--------~~~~v~~~~v~~~v~~vm~-~~~g~~~r~ra~~l~~~a~~ 448 (480)
T PLN02555 378 VVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEA--------ENKLITREEVAECLLEATV-GEKAAELKQNALKWKEEAEA 448 (480)
T ss_pred EEeCCCccccHHHHHHHHHHhCceEEccCCcc--------ccCcCcHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999963210 0236899999999999994 78899999999999999999
Q ss_pred hhhcCCcHHHHHHHHHHHHhCC
Q 036936 81 ATEETGSSSLMIKLLIQDIMQP 102 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~~~ 102 (110)
|+.+||||+.||++||++++..
T Consensus 449 A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 449 AVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred HhcCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999876
No 3
>PLN02210 UDP-glucosyl transferase
Probab=99.88 E-value=2.1e-22 Score=159.35 Aligned_cols=90 Identities=30% Similarity=0.488 Sum_probs=81.9
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+++||+.||+++++.||+|+++.... .++.+++++|+++|+++|. +++|+++|+||++|++.+++
T Consensus 365 ~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~---------~~~~~~~~~l~~av~~~m~-~~~g~~~r~~a~~l~~~a~~ 434 (456)
T PLN02210 365 VVAYPSWTDQPIDARLLVDVFGIGVRMRNDA---------VDGELKVEEVERCIEAVTE-GPAAADIRRRAAELKHVARL 434 (456)
T ss_pred EEecccccccHHHHHHHHHHhCeEEEEeccc---------cCCcCCHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999899999996421 0246899999999999994 78899999999999999999
Q ss_pred hhhcCCcHHHHHHHHHHHHh
Q 036936 81 ATEETGSSSLMIKLLIQDIM 100 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~ 100 (110)
|+.+||||+.||+.||++++
T Consensus 435 Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 435 ALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HhcCCCcHHHHHHHHHHHHh
Confidence 99999999999999999986
No 4
>PLN03015 UDP-glucosyl transferase
Probab=99.87 E-value=3.5e-22 Score=158.69 Aligned_cols=91 Identities=20% Similarity=0.363 Sum_probs=81.0
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDE-GGERNDRRKRGREFHIMAK 79 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~-~eeg~~~r~~a~~l~~~~~ 79 (110)
||+||+|+||+.||+++++.||+|+++.... ..+.+++++|+++|+++|.+ +++|+++|+||++|+++++
T Consensus 376 ~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~---------~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~ 446 (470)
T PLN03015 376 IVAWPLYAEQWMNATLLTEEIGVAVRTSELP---------SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSE 446 (470)
T ss_pred EEecccccchHHHHHHHHHHhCeeEEecccc---------cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999996311 12379999999999999941 3789999999999999999
Q ss_pred HhhhcCCcHHHHHHHHHHHHh
Q 036936 80 RATEETGSSSLMIKLLIQDIM 100 (110)
Q Consensus 80 ~a~~~gGsS~~~l~~~v~~l~ 100 (110)
+|+.+||||+.||+.||..+.
T Consensus 447 ~Av~eGGSS~~nl~~~~~~~~ 467 (470)
T PLN03015 447 RAWSHGGSSYNSLFEWAKRCY 467 (470)
T ss_pred HHhcCCCcHHHHHHHHHHhcc
Confidence 999999999999999999874
No 5
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.87 E-value=4.1e-22 Score=157.58 Aligned_cols=90 Identities=24% Similarity=0.424 Sum_probs=82.1
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+|+||+.|++++++.||+|+++..+. .++.+++++|+++|+++|. +++|+.+|+||++|++++++
T Consensus 358 ~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~---------~~~~~~~e~v~~av~~vm~-~~~~~~~r~~a~~~~~~a~~ 427 (449)
T PLN02173 358 MVAMPQWTDQPMNAKYIQDVWKVGVRVKAEK---------ESGIAKREEIEFSIKEVME-GEKSKEMKENAGKWRDLAVK 427 (449)
T ss_pred EEecCchhcchHHHHHHHHHhCceEEEeecc---------cCCcccHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999997531 1236899999999999994 78899999999999999999
Q ss_pred hhhcCCcHHHHHHHHHHHHh
Q 036936 81 ATEETGSSSLMIKLLIQDIM 100 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~ 100 (110)
|+.+||||+.||++||+++.
T Consensus 428 Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 428 SLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HhcCCCcHHHHHHHHHHHhc
Confidence 99999999999999999985
No 6
>PLN02207 UDP-glycosyltransferase
Probab=99.87 E-value=7.2e-22 Score=156.85 Aligned_cols=95 Identities=27% Similarity=0.463 Sum_probs=81.8
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+|+||+.||++++++||+|+++..+.. . + ..+.+++++|+++|+++|. ++|++||+||++|++++++
T Consensus 373 ~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~--~--~--~~~~v~~e~i~~av~~vm~--~~~~~~r~~a~~l~~~a~~ 444 (468)
T PLN02207 373 IVTWPMYAEQQLNAFLMVKELKLAVELKLDYR--V--H--SDEIVNANEIETAIRCVMN--KDNNVVRKRVMDISQMIQR 444 (468)
T ss_pred EEecCccccchhhHHHHHHHhCceEEEecccc--c--c--cCCcccHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999853210 0 0 0236799999999999993 4578999999999999999
Q ss_pred hhhcCCcHHHHHHHHHHHHhCCC
Q 036936 81 ATEETGSSSLMIKLLIQDIMQPP 103 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~~~~ 103 (110)
|+.+||||+.||++||++++..+
T Consensus 445 A~~~GGSS~~~l~~~v~~~~~~~ 467 (468)
T PLN02207 445 ATKNGGSSFAAIEKFIHDVIGIK 467 (468)
T ss_pred HhcCCCcHHHHHHHHHHHHHhcc
Confidence 99999999999999999998754
No 7
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.86 E-value=1.5e-21 Score=154.42 Aligned_cols=87 Identities=23% Similarity=0.240 Sum_probs=81.1
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+++||+.||+++++.||+|+++.. .+++++|+++|+++|. +++|+++|+++++|++.++.
T Consensus 365 ~l~~P~~~DQ~~na~~~~~~~~~G~~~~~--------------~~~~~~v~~av~~lm~-~~~~~~~r~~a~~l~~~~~~ 429 (451)
T PLN02410 365 MICKPFSSDQKVNARYLECVWKIGIQVEG--------------DLDRGAVERAVKRLMV-EEEGEEMRKRAISLKEQLRA 429 (451)
T ss_pred EEeccccccCHHHHHHHHHHhCeeEEeCC--------------cccHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999962 4899999999999994 77799999999999999999
Q ss_pred hhhcCCcHHHHHHHHHHHHhCC
Q 036936 81 ATEETGSSSLMIKLLIQDIMQP 102 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~~~ 102 (110)
|+.+||||+.||++||+.++.+
T Consensus 430 a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 430 SVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred HhcCCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998753
No 8
>PLN00164 glucosyltransferase; Provisional
Probab=99.85 E-value=3.5e-21 Score=153.25 Aligned_cols=95 Identities=25% Similarity=0.432 Sum_probs=82.4
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGG-ERNDRRKRGREFHIMAK 79 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~e-eg~~~r~~a~~l~~~~~ 79 (110)
||+||+|+||+.||+++++.||+|+.+..... .++.+++++|+++|+++|.+++ +|+.+|+||++|+++++
T Consensus 380 ~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~--------~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~ 451 (480)
T PLN00164 380 MAPWPLYAEQHLNAFELVADMGVAVAMKVDRK--------RDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACR 451 (480)
T ss_pred EEeCCccccchhHHHHHHHHhCeEEEeccccc--------cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999964210 0236899999999999995222 58999999999999999
Q ss_pred HhhhcCCcHHHHHHHHHHHHhCCC
Q 036936 80 RATEETGSSSLMIKLLIQDIMQPP 103 (110)
Q Consensus 80 ~a~~~gGsS~~~l~~~v~~l~~~~ 103 (110)
+|+.+||||+.+|+.||++++...
T Consensus 452 ~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 452 KAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred HHhcCCCcHHHHHHHHHHHHHhcc
Confidence 999999999999999999998653
No 9
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.85 E-value=4.2e-21 Score=152.66 Aligned_cols=96 Identities=35% Similarity=0.581 Sum_probs=82.9
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+++||+.||+++++.|++|+.+........ ....+++++|+++|+++|. +++|++||+|+++|++.++.
T Consensus 386 ~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~-----~~~~~~~~~l~~av~~~m~-~~~~~~~r~~a~~~~~~a~~ 459 (482)
T PLN03007 386 MVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKV-----KGDFISREKVEKAVREVIV-GEEAEERRLRAKKLAEMAKA 459 (482)
T ss_pred eeeccchhhhhhhHHHHHHhhcceeEecccccccc-----ccCcccHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999853210000 0236899999999999994 78899999999999999999
Q ss_pred hhhcCCcHHHHHHHHHHHHhCC
Q 036936 81 ATEETGSSSLMIKLLIQDIMQP 102 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~~~ 102 (110)
|+.+||||+.||++||+.++..
T Consensus 460 a~~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 460 AVEEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred HHhCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999864
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.84 E-value=1.1e-20 Score=150.56 Aligned_cols=89 Identities=19% Similarity=0.318 Sum_probs=81.0
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+|+||+.||+++++.||+|+++... ++.+++++|+++|+++|. +++|+.+|++++++++.+++
T Consensus 379 ~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~-----------~~~~~~~~l~~av~~vm~-~~~g~~~r~~a~~~~~~a~~ 446 (481)
T PLN02992 379 MIAWPLFAEQNMNAALLSDELGIAVRSDDP-----------KEVISRSKIEALVRKVMV-EEEGEEMRRKVKKLRDTAEM 446 (481)
T ss_pred EEecCccchhHHHHHHHHHHhCeeEEecCC-----------CCcccHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHH
Confidence 699999999999999999889999999742 236899999999999994 77899999999999999999
Q ss_pred hhh--cCCcHHHHHHHHHHHHhC
Q 036936 81 ATE--ETGSSSLMIKLLIQDIMQ 101 (110)
Q Consensus 81 a~~--~gGsS~~~l~~~v~~l~~ 101 (110)
|+. +||||++||+.||+++++
T Consensus 447 Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 447 SLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HhcCCCCCchHHHHHHHHHHHHH
Confidence 995 599999999999999875
No 11
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.84 E-value=1.7e-20 Score=148.39 Aligned_cols=94 Identities=36% Similarity=0.516 Sum_probs=82.3
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDE-GGERNDRRKRGREFHIMAK 79 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~-~eeg~~~r~~a~~l~~~~~ 79 (110)
||+||+++||+.||+++++.||+|+.+..... ..+.+++++|+++|+++|.+ +++|+++|+||++|+++++
T Consensus 364 ~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~--------~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~ 435 (459)
T PLN02448 364 MLTFPLFWDQPLNSKLIVEDWKIGWRVKREVG--------EETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICR 435 (459)
T ss_pred EEeccccccchhhHHHHHHHhCceEEEecccc--------cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999964210 02368999999999999952 2578999999999999999
Q ss_pred HhhhcCCcHHHHHHHHHHHHhCC
Q 036936 80 RATEETGSSSLMIKLLIQDIMQP 102 (110)
Q Consensus 80 ~a~~~gGsS~~~l~~~v~~l~~~ 102 (110)
.|+.+||||++||+.||+.+++.
T Consensus 436 ~a~~~gGss~~~l~~~v~~~~~~ 458 (459)
T PLN02448 436 GAIAKGGSSDTNLDAFIRDISQG 458 (459)
T ss_pred HHhcCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999999999853
No 12
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.83 E-value=2.3e-20 Score=147.83 Aligned_cols=88 Identities=20% Similarity=0.408 Sum_probs=79.2
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+|+||+.||+++++.||+|+.+.... .+.+++++|+++|+++|+ +++.++|+|+++|++.+++
T Consensus 368 ~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~----------~~~~~~e~l~~av~~vm~--~~~~~~r~~a~~~~~~~~~ 435 (455)
T PLN02152 368 VVAFPMWSDQPANAKLLEEIWKTGVRVRENS----------EGLVERGEIRRCLEAVME--EKSVELRESAEKWKRLAIE 435 (455)
T ss_pred EEeccccccchHHHHHHHHHhCceEEeecCc----------CCcCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999986431 236799999999999993 4577899999999999999
Q ss_pred hhhcCCcHHHHHHHHHHHHh
Q 036936 81 ATEETGSSSLMIKLLIQDIM 100 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~ 100 (110)
|+.+||||+.||++||++++
T Consensus 436 a~~~ggsS~~nl~~li~~i~ 455 (455)
T PLN02152 436 AGGEGGSSDKNVEAFVKTLC 455 (455)
T ss_pred HHcCCCcHHHHHHHHHHHhC
Confidence 99999999999999999874
No 13
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.83 E-value=3.3e-20 Score=147.65 Aligned_cols=89 Identities=24% Similarity=0.422 Sum_probs=79.6
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+++||+.||+++++.||+|+++..+. .+.+++++|+++|+++|. +|+.||+||+++++++++
T Consensus 384 ~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~----------~~~~~~~~v~~~v~~~m~---~~~~~r~~a~~l~e~a~~ 450 (477)
T PLN02863 384 MLAWPMAADQFVNASLLVDELKVAVRVCEGA----------DTVPDSDELARVFMESVS---ENQVERERAKELRRAALD 450 (477)
T ss_pred EEeCCccccchhhHHHHHHhhceeEEeccCC----------CCCcCHHHHHHHHHHHhh---ccHHHHHHHHHHHHHHHH
Confidence 6999999999999999999999999996421 235799999999999993 346999999999999999
Q ss_pred hhhcCCcHHHHHHHHHHHHhCC
Q 036936 81 ATEETGSSSLMIKLLIQDIMQP 102 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~~~ 102 (110)
|+.+||||+.||++||+.++..
T Consensus 451 Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 451 AIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred HhccCCcHHHHHHHHHHHHHHh
Confidence 9999999999999999999764
No 14
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.82 E-value=3.2e-20 Score=147.68 Aligned_cols=97 Identities=28% Similarity=0.321 Sum_probs=79.7
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+|+||+.||+++++.||+|+.+...... +...+ ....+++++|+++|+++|. ++ +.||+|++++++.+++
T Consensus 383 ~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~-~~~~~-~~~~~~~e~l~~av~~vm~-~~--~~~r~~a~~l~~~~~~ 457 (481)
T PLN02554 383 MAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRG-DLLAG-EMETVTAEEIERGIRCLME-QD--SDVRKRVKEMSEKCHV 457 (481)
T ss_pred EEecCccccchhhHHHHHHHhCceEEeeccccc-ccccc-ccCeEcHHHHHHHHHHHhc-CC--HHHHHHHHHHHHHHHH
Confidence 799999999999999988899999999631000 00000 0236899999999999994 33 4899999999999999
Q ss_pred hhhcCCcHHHHHHHHHHHHhCC
Q 036936 81 ATEETGSSSLMIKLLIQDIMQP 102 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~~~ 102 (110)
|+.+||||+.||++||+++++.
T Consensus 458 av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 458 ALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999864
No 15
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.81 E-value=1.2e-19 Score=144.28 Aligned_cols=93 Identities=28% Similarity=0.509 Sum_probs=79.4
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+++||+.||+++++.||+|+.+..... .+ .+..+++++|+++|+++|. ++ +.||+|++++++.+++
T Consensus 381 ~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~----~~--~~~~~~~~~l~~av~~~m~-~~--~~~r~~a~~~~~~~~~ 451 (475)
T PLN02167 381 IATWPMYAEQQLNAFTMVKELGLAVELRLDYV----SA--YGEIVKADEIAGAVRSLMD-GE--DVPRKKVKEIAEAARK 451 (475)
T ss_pred EEeccccccchhhHHHHHHHhCeeEEeecccc----cc--cCCcccHHHHHHHHHHHhc-CC--HHHHHHHHHHHHHHHH
Confidence 69999999999999998889999999964200 00 0136799999999999994 44 3899999999999999
Q ss_pred hhhcCCcHHHHHHHHHHHHhCC
Q 036936 81 ATEETGSSSLMIKLLIQDIMQP 102 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~~~ 102 (110)
|+.+||||+.||++||++++..
T Consensus 452 av~~gGsS~~~l~~~v~~i~~~ 473 (475)
T PLN02167 452 AVMDGGSSFVAVKRFIDDLLGD 473 (475)
T ss_pred HHhCCCcHHHHHHHHHHHHHhc
Confidence 9999999999999999999764
No 16
>PLN02208 glycosyltransferase family protein
Probab=99.80 E-value=2.2e-19 Score=141.75 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=76.1
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEG-GERNDRRKRGREFHIMAK 79 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~-eeg~~~r~~a~~l~~~~~ 79 (110)
||+||+|+||+.||++++++||+|+.+.... ++.+++++|+++|+++|+++ ++|+++|++++++++.+.
T Consensus 352 ~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~----------~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~ 421 (442)
T PLN02208 352 MVLIPFLSDQVLFTRLMTEEFEVSVEVSREK----------TGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV 421 (442)
T ss_pred EEecCcchhhHHHHHHHHHHhceeEEecccc----------CCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999997531 23699999999999999522 468999999999999973
Q ss_pred HhhhcCCcHHHHHHHHHHHHhCC
Q 036936 80 RATEETGSSSLMIKLLIQDIMQP 102 (110)
Q Consensus 80 ~a~~~gGsS~~~l~~~v~~l~~~ 102 (110)
.+|||+.||++||+.+++.
T Consensus 422 ----~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 422 ----SPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred ----cCCcHHHHHHHHHHHHHHh
Confidence 4789999999999999754
No 17
>PLN02764 glycosyltransferase family protein
Probab=99.78 E-value=1.3e-18 Score=137.79 Aligned_cols=92 Identities=21% Similarity=0.271 Sum_probs=79.5
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEG-GERNDRRKRGREFHIMAK 79 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~-eeg~~~r~~a~~l~~~~~ 79 (110)
||+||+++||+.||+++++.||+|+.+.... .+.+++++|+++|+++|+++ ++|+++|+++++++++++
T Consensus 358 ~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~----------~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~ 427 (453)
T PLN02764 358 IVLVPQLGDQVLNTRLLSDELKVSVEVAREE----------TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA 427 (453)
T ss_pred EEeCCcccchHHHHHHHHHHhceEEEecccc----------CCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 6999999999999999998999999985420 13589999999999999522 568999999999999984
Q ss_pred HhhhcCCcHHHHHHHHHHHHhCCCCCC
Q 036936 80 RATEETGSSSLMIKLLIQDIMQPPHGD 106 (110)
Q Consensus 80 ~a~~~gGsS~~~l~~~v~~l~~~~~~~ 106 (110)
+||||+.+|+.||+++.+..+..
T Consensus 428 ----~~GSS~~~l~~lv~~~~~~~~~~ 450 (453)
T PLN02764 428 ----SPGLLTGYVDNFIESLQDLVSGT 450 (453)
T ss_pred ----hcCCHHHHHHHHHHHHHHhcccc
Confidence 68999999999999999886654
No 18
>PLN02562 UDP-glycosyltransferase
Probab=99.77 E-value=1.5e-18 Score=137.14 Aligned_cols=80 Identities=25% Similarity=0.342 Sum_probs=72.3
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+++||+.||+++++.||+|+++. .+++++|+++|+++|. ++ .||+|++++++.++.
T Consensus 369 ~l~~P~~~DQ~~na~~~~~~~g~g~~~~---------------~~~~~~l~~~v~~~l~-~~---~~r~~a~~l~~~~~~ 429 (448)
T PLN02562 369 LLCYPVAGDQFVNCAYIVDVWKIGVRIS---------------GFGQKEVEEGLRKVME-DS---GMGERLMKLRERAMG 429 (448)
T ss_pred EEeCCcccchHHHHHHHHHHhCceeEeC---------------CCCHHHHHHHHHHHhC-CH---HHHHHHHHHHHHHHh
Confidence 6899999999999999998899998884 2689999999999994 65 899999999999887
Q ss_pred hhhcCCcHHHHHHHHHHHHh
Q 036936 81 ATEETGSSSLMIKLLIQDIM 100 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~ 100 (110)
+ ..||||++||+.||++++
T Consensus 430 ~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 430 E-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred c-CCCCCHHHHHHHHHHHhC
Confidence 7 668999999999999875
No 19
>PLN00414 glycosyltransferase family protein
Probab=99.72 E-value=2.1e-17 Score=130.73 Aligned_cols=90 Identities=13% Similarity=0.173 Sum_probs=74.8
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEG-GERNDRRKRGREFHIMAK 79 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~-eeg~~~r~~a~~l~~~~~ 79 (110)
||+||+++||+.||++++++||+|+++.... .+.+++++|+++|+++|.++ ++|+++|++++++++.+
T Consensus 353 ~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~----------~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~- 421 (446)
T PLN00414 353 IVFIPQLADQVLITRLLTEELEVSVKVQRED----------SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETL- 421 (446)
T ss_pred EEecCcccchHHHHHHHHHHhCeEEEecccc----------CCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH-
Confidence 6999999999999999999999999996421 23689999999999999522 56889999999999986
Q ss_pred HhhhcCCcHHHHHHHHHHHHhCCCC
Q 036936 80 RATEETGSSSLMIKLLIQDIMQPPH 104 (110)
Q Consensus 80 ~a~~~gGsS~~~l~~~v~~l~~~~~ 104 (110)
+.+|||| +.+++||+++++..+
T Consensus 422 --~~~gg~s-s~l~~~v~~~~~~~~ 443 (446)
T PLN00414 422 --VSPGLLS-GYADKFVEALENEVN 443 (446)
T ss_pred --HcCCCcH-HHHHHHHHHHHHhcc
Confidence 4577744 339999999987654
No 20
>PLN03004 UDP-glycosyltransferase
Probab=99.72 E-value=7e-18 Score=133.62 Aligned_cols=76 Identities=28% Similarity=0.417 Sum_probs=68.1
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+|+||+.||++++++||+|+++.... .+.+++++|+++|+++|+ ++ .||+|+++|+++++.
T Consensus 375 ~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~----------~~~~~~e~l~~av~~vm~-~~---~~r~~a~~~~~~a~~ 440 (451)
T PLN03004 375 MVAWPLYAEQRFNRVMIVDEIKIAISMNESE----------TGFVSSTEVEKRVQEIIG-EC---PVRERTMAMKNAAEL 440 (451)
T ss_pred EEeccccccchhhHHHHHHHhCceEEecCCc----------CCccCHHHHHHHHHHHhc-CH---HHHHHHHHHHHHHHH
Confidence 6999999999999999999999999997531 236899999999999994 54 899999999999999
Q ss_pred hhhcCCcHHH
Q 036936 81 ATEETGSSSL 90 (110)
Q Consensus 81 a~~~gGsS~~ 90 (110)
|+.+||||++
T Consensus 441 Av~~GGSS~~ 450 (451)
T PLN03004 441 ALTETGSSHT 450 (451)
T ss_pred HhcCCCCCCC
Confidence 9999999975
No 21
>PLN02670 transferase, transferring glycosyl groups
Probab=99.61 E-value=2.5e-15 Score=119.72 Aligned_cols=90 Identities=12% Similarity=0.232 Sum_probs=75.2
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||+||+++||+.||++++ .||+|+++...+ .++.+++++|+++|+++|. +++|++||+||++|++.+++
T Consensus 380 ~l~~P~~~DQ~~Na~~v~-~~g~Gv~l~~~~---------~~~~~~~e~i~~av~~vm~-~~~g~~~r~~a~~l~~~~~~ 448 (472)
T PLN02670 380 LILFPVLNEQGLNTRLLH-GKKLGLEVPRDE---------RDGSFTSDSVAESVRLAMV-DDAGEEIRDKAKEMRNLFGD 448 (472)
T ss_pred EEeCcchhccHHHHHHHH-HcCeeEEeeccc---------cCCcCcHHHHHHHHHHHhc-CcchHHHHHHHHHHHHHHhC
Confidence 799999999999999997 589999996531 0236899999999999994 78899999999999999875
Q ss_pred hhhcCCcHHHHHHHHHHHHhCCCCC
Q 036936 81 ATEETGSSSLMIKLLIQDIMQPPHG 105 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~~~~~~ 105 (110)
-+.-...++.|++.++....+
T Consensus 449 ----~~~~~~~~~~~~~~l~~~~~~ 469 (472)
T PLN02670 449 ----MDRNNRYVDELVHYLRENRSS 469 (472)
T ss_pred ----cchhHHHHHHHHHHHHHhccc
Confidence 444467889999998877643
No 22
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.18 E-value=2.8e-11 Score=95.76 Aligned_cols=63 Identities=19% Similarity=0.350 Sum_probs=53.9
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
|||+|+|+||+.||.++++. |+|+.++.. .++.+++.++|+++++ ++ +|++||++++.++++
T Consensus 364 ~l~~P~~~DQ~~na~~~~~~-G~g~~l~~~-------------~~~~~~l~~ai~~vl~-~~---~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 364 MLGIPLFGDQPRNAARVEEK-GVGVVLDKN-------------DLTEEELRAAIREVLE-NP---SYKENAKRLSSLFRD 425 (500)
T ss_dssp EEE-GCSTTHHHHHHHHHHT-TSEEEEGGG-------------C-SHHHHHHHHHHHHH-SH---HHHHHHHHHHHTTT-
T ss_pred ccCCCCcccCCccceEEEEE-eeEEEEEec-------------CCcHHHHHHHHHHHHh-hh---HHHHHHHHHHHHHhc
Confidence 69999999999999999975 999999864 5899999999999994 66 899999999999987
Q ss_pred h
Q 036936 81 A 81 (110)
Q Consensus 81 a 81 (110)
.
T Consensus 426 ~ 426 (500)
T PF00201_consen 426 R 426 (500)
T ss_dssp -
T ss_pred C
Confidence 4
No 23
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.00 E-value=3.3e-09 Score=85.40 Aligned_cols=82 Identities=22% Similarity=0.368 Sum_probs=64.2
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
||++|+++||+.||+++++ +|+|+.+... .++.++|.++|+++++ ++ +||+||+++++.+++
T Consensus 387 ~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~~-------------~~t~~~l~~ai~~vl~-~~---~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 387 MVGLPMMGDQFYNTNKYVE-LGIGRALDTV-------------TVSAAQLVLAIVDVIE-NP---KYRKNLKELRHLIRH 448 (507)
T ss_pred EEECCCCccHHHHHHHHHH-cCcEEEeccC-------------CcCHHHHHHHHHHHhC-CH---HHHHHHHHHHHHHHh
Confidence 6899999999999999986 6999998763 4799999999999994 65 899999999999987
Q ss_pred hhhcCCcHHHHHHHHHHHHhCCC
Q 036936 81 ATEETGSSSLMIKLLIQDIMQPP 103 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~~~~ 103 (110)
+ .-+.....-..++.+.+..
T Consensus 449 --~-p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 449 --Q-PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred --C-CCCHHHHHHHHHHHHHhCC
Confidence 2 2222334445555554433
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=98.88 E-value=8.4e-09 Score=81.33 Aligned_cols=61 Identities=23% Similarity=0.400 Sum_probs=47.1
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAK 79 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~ 79 (110)
|||||+|+||+.||+++++.|++++....+ ++..++..++..++. .+ +|.++++++++..+
T Consensus 377 ~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~--------------~~~~~~~~~~~~il~-~~---~y~~~~~~l~~~~~ 437 (496)
T KOG1192|consen 377 MVCVPLFGDQPLNARLLVRHGGGGVLDKRD--------------LVSEELLEAIKEILE-NE---EYKEAAKRLSEILR 437 (496)
T ss_pred eecCCccccchhHHHHHHhCCCEEEEehhh--------------cCcHHHHHHHHHHHc-Ch---HHHHHHHHHHHHHH
Confidence 689999999999999999999999888653 333337777777773 55 67777777777654
No 25
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.42 E-value=1.6e-06 Score=68.18 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=65.5
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
+|..|...||+.||.++.+ +|.|+.+... ..+.+.++.+|+++|+ ++ .|+++++++++.++.
T Consensus 323 ~vv~P~~~DQ~~nA~rve~-~G~G~~l~~~-------------~l~~~~l~~av~~vL~-~~---~~~~~~~~~~~~~~~ 384 (406)
T COG1819 323 LVVIPDGADQPLNAERVEE-LGAGIALPFE-------------ELTEERLRAAVNEVLA-DD---SYRRAAERLAEEFKE 384 (406)
T ss_pred EEEecCCcchhHHHHHHHH-cCCceecCcc-------------cCCHHHHHHHHHHHhc-CH---HHHHHHHHHHHHhhh
Confidence 4789999999999999986 6999999764 5899999999999995 65 899999999999876
Q ss_pred hhhcCCcHHHHHHHHHHHHhCCC
Q 036936 81 ATEETGSSSLMIKLLIQDIMQPP 103 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l~~~~ 103 (110)
.+| .....+.++.+...+
T Consensus 385 ---~~g--~~~~a~~le~~~~~~ 402 (406)
T COG1819 385 ---EDG--PAKAADLLEEFAREK 402 (406)
T ss_pred ---ccc--HHHHHHHHHHHHhcc
Confidence 444 456677777655443
No 26
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=98.31 E-value=4.6e-06 Score=64.22 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=59.5
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
+|++|.++||+.|++++++ +|+|+.+... .++.++|..+|++++. ++ .++++++++++.++.
T Consensus 314 ~v~~p~~~dq~~~a~~l~~-~g~g~~l~~~-------------~~~~~~l~~ai~~~l~-~~---~~~~~~~~l~~~~~~ 375 (392)
T TIGR01426 314 MVAVPQGADQPMTARRIAE-LGLGRHLPPE-------------EVTAEKLREAVLAVLS-DP---RYAERLRKMRAEIRE 375 (392)
T ss_pred EEecCCcccHHHHHHHHHH-CCCEEEeccc-------------cCCHHHHHHHHHHHhc-CH---HHHHHHHHHHHHHHH
Confidence 5889999999999999986 6999887642 4789999999999994 65 799999999998864
Q ss_pred hhhcCCcHHHHHHHHHHHH
Q 036936 81 ATEETGSSSLMIKLLIQDI 99 (110)
Q Consensus 81 a~~~gGsS~~~l~~~v~~l 99 (110)
.+|. ....++|+.+
T Consensus 376 ---~~~~--~~aa~~i~~~ 389 (392)
T TIGR01426 376 ---AGGA--RRAADEIEGF 389 (392)
T ss_pred ---cCCH--HHHHHHHHHh
Confidence 3443 3444444443
No 27
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=98.05 E-value=1.5e-05 Score=61.19 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=47.8
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAK 79 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~ 79 (110)
+|.+|++.||+.||+++++ +|+|+.+... .++.++|.++|+++++ + .+++++.++.+.++
T Consensus 327 ~v~~P~~~dQ~~~a~~~~~-~G~g~~l~~~-------------~~~~~~l~~al~~~l~-~----~~~~~~~~~~~~~~ 386 (401)
T cd03784 327 QLVVPFFGDQPFWAARVAE-LGAGPALDPR-------------ELTAERLAAALRRLLD-P----PSRRRAAALLRRIR 386 (401)
T ss_pred EEeeCCCCCcHHHHHHHHH-CCCCCCCCcc-------------cCCHHHHHHHHHHHhC-H----HHHHHHHHHHHHHH
Confidence 5789999999999999986 6999888653 3799999999999994 3 46666666666553
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=96.12 E-value=0.0091 Score=46.06 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=40.2
Q ss_pred Ceecccc-----cchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHH
Q 036936 1 MITWPLF-----GDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRG 71 (110)
Q Consensus 1 mi~~P~~-----~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a 71 (110)
+|..|+. .+|+.||+++++ .|+|..+... .++.+.+.++|..++. +.+ .+++++
T Consensus 275 ~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~~~l~~~-------------~~~~~~l~~~l~~ll~-~~~--~~~~~~ 333 (352)
T PRK12446 275 MLLIPLSKFASRGDQILNAESFER-QGYASVLYEE-------------DVTVNSLIKHVEELSH-NNE--KYKTAL 333 (352)
T ss_pred EEEEcCCCCCCCchHHHHHHHHHH-CCCEEEcchh-------------cCCHHHHHHHHHHHHc-CHH--HHHHHH
Confidence 3566764 489999999997 5999888642 4789999999999994 542 454433
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=94.96 E-value=0.27 Score=38.35 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=40.1
Q ss_pred cchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHH
Q 036936 8 GDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKR 80 (110)
Q Consensus 8 ~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~ 80 (110)
.+|..||+++++. |.|..+... .+|.+++...|.+++. + .++.++|++.++.
T Consensus 286 ~~Q~~NA~~l~~~-gaa~~i~~~-------------~lt~~~l~~~i~~l~~-~------~~~l~~m~~~a~~ 337 (357)
T COG0707 286 GHQEYNAKFLEKA-GAALVIRQS-------------ELTPEKLAELILRLLS-N------PEKLKAMAENAKK 337 (357)
T ss_pred chHHHHHHHHHhC-CCEEEeccc-------------cCCHHHHHHHHHHHhc-C------HHHHHHHHHHHHh
Confidence 4899999999986 999888753 5899999999999994 4 2355555555554
No 30
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=94.29 E-value=0.39 Score=36.21 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=47.1
Q ss_pred eeccc----ccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Q 036936 2 ITWPL----FGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIM 77 (110)
Q Consensus 2 i~~P~----~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~ 77 (110)
|+.|. .++|..|+..+.+. |.|..+... .++.+.+.++|..+++ ++ .+++. |++.
T Consensus 276 v~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~~-------------~~~~~~l~~~i~~ll~-~~---~~~~~---~~~~ 334 (357)
T PRK00726 276 ILVPLPHAADDHQTANARALVDA-GAALLIPQS-------------DLTPEKLAEKLLELLS-DP---ERLEA---MAEA 334 (357)
T ss_pred EEecCCCCCcCcHHHHHHHHHHC-CCEEEEEcc-------------cCCHHHHHHHHHHHHc-CH---HHHHH---HHHH
Confidence 45554 47899999999875 999888642 3679999999999994 54 44433 3333
Q ss_pred HHHhhhcCCcHHHHHHHHHH
Q 036936 78 AKRATEETGSSSLMIKLLIQ 97 (110)
Q Consensus 78 ~~~a~~~gGsS~~~l~~~v~ 97 (110)
++... ...+...-.+.+.+
T Consensus 335 ~~~~~-~~~~~~~~~~~~~~ 353 (357)
T PRK00726 335 ARALG-KPDAAERLADLIEE 353 (357)
T ss_pred HHhcC-CcCHHHHHHHHHHH
Confidence 33332 33443444444443
No 31
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=94.26 E-value=0.052 Score=40.28 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=35.4
Q ss_pred Ceeccc--ccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHH
Q 036936 1 MITWPL--FGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINIL 57 (110)
Q Consensus 1 mi~~P~--~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~l 57 (110)
+|..|. +.||..||+.+.+ +|+|+.+... .++.+.++++|+++
T Consensus 273 ~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~~~~-------------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 273 ALVIPRPGQDEQEYNARKLEE-LGLGIVLSQE-------------DLTPERLAEFLERL 317 (318)
T ss_pred EEEEeCCCCchHHHHHHHHHH-CCCeEEcccc-------------cCCHHHHHHHHhcC
Confidence 367788 8899999999986 6999998653 58999999998764
No 32
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=86.54 E-value=0.29 Score=33.20 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=33.4
Q ss_pred Ceeccccc----chhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhc
Q 036936 1 MITWPLFG----DQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMD 59 (110)
Q Consensus 1 mi~~P~~~----DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~ 59 (110)
+|.+|+-. +|..|+.++++. |.|..+... ..+.+.+.++|..++.
T Consensus 95 ~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~-------------~~~~~~L~~~i~~l~~ 143 (167)
T PF04101_consen 95 AIVIPLPGAADNHQEENAKELAKK-GAAIMLDES-------------ELNPEELAEAIEELLS 143 (167)
T ss_dssp EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECC-------------C-SCCCHHHHHHCHCC
T ss_pred eeccCCCCcchHHHHHHHHHHHHc-CCccccCcc-------------cCCHHHHHHHHHHHHc
Confidence 35678888 999999999974 888776542 3568899999999984
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=85.25 E-value=2.4 Score=31.56 Aligned_cols=41 Identities=20% Similarity=0.125 Sum_probs=31.9
Q ss_pred ccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCc
Q 036936 7 FGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGG 62 (110)
Q Consensus 7 ~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~e 62 (110)
..+|..|+..+++. |.|+.+... ..+.+++.++|+.++. ++
T Consensus 285 ~~~~~~~~~~l~~~-g~g~~v~~~-------------~~~~~~l~~~i~~ll~-~~ 325 (350)
T cd03785 285 DDHQTANARALVKA-GAAVLIPQE-------------ELTPERLAAALLELLS-DP 325 (350)
T ss_pred CCcHHHhHHHHHhC-CCEEEEecC-------------CCCHHHHHHHHHHHhc-CH
Confidence 35788999999874 888887642 2578899999999994 54
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=85.08 E-value=2.5 Score=31.44 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=30.8
Q ss_pred cchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCc
Q 036936 8 GDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGG 62 (110)
Q Consensus 8 ~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~e 62 (110)
++|..|+.++.+ .+.|.-+... ..+.+.+.++|+.+++ ++
T Consensus 283 ~~~~~~~~~i~~-~~~G~~~~~~-------------~~~~~~l~~~i~~ll~-~~ 322 (348)
T TIGR01133 283 DDQYYNAKFLED-LGAGLVIRQK-------------ELLPEKLLEALLKLLL-DP 322 (348)
T ss_pred cchhhHHHHHHH-CCCEEEEecc-------------cCCHHHHHHHHHHHHc-CH
Confidence 468889999886 4888776432 3578999999999994 54
No 35
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=81.88 E-value=1.2 Score=33.49 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=22.7
Q ss_pred Ceeccccc--chhHHHHHHHHHHcceEEecc
Q 036936 1 MITWPLFG--DQFWNEKLIVQVLNIGERIGV 29 (110)
Q Consensus 1 mi~~P~~~--DQ~~Na~~v~~~~giGv~v~~ 29 (110)
+|..|+.+ ||..||+++++ .|+|+.+..
T Consensus 270 ~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~ 299 (321)
T TIGR00661 270 LIVIPDLGQFEQGNNAVKLED-LGCGIALEY 299 (321)
T ss_pred EEEEcCCCcccHHHHHHHHHH-CCCEEEcCh
Confidence 36678865 89999999996 599988765
No 36
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=80.01 E-value=12 Score=29.00 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=41.6
Q ss_pred ccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhhhc
Q 036936 5 PLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKRATEE 84 (110)
Q Consensus 5 P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~a~~~ 84 (110)
|.-+.|..|+.++.+. |+|+.+. +.+++..+|..+++ ++ .. ..+|++.++....
T Consensus 301 ~~pgqe~~N~~~~~~~-G~g~~~~-----------------~~~~l~~~i~~ll~-~~---~~---~~~m~~~~~~~~~- 354 (391)
T PRK13608 301 PAPGQELENALYFEEK-GFGKIAD-----------------TPEEAIKIVASLTN-GN---EQ---LTNMISTMEQDKI- 354 (391)
T ss_pred CCCCcchhHHHHHHhC-CcEEEeC-----------------CHHHHHHHHHHHhc-CH---HH---HHHHHHHHHHhcC-
Confidence 5556678999999874 8886532 56788999999994 54 22 2344455444332
Q ss_pred CCcHHHHHHHHHHHH
Q 036936 85 TGSSSLMIKLLIQDI 99 (110)
Q Consensus 85 gGsS~~~l~~~v~~l 99 (110)
.-+...-.+.+.+.+
T Consensus 355 ~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 355 KYATQTICRDLLDLI 369 (391)
T ss_pred CCCHHHHHHHHHHHh
Confidence 344444444444433
No 37
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=72.24 E-value=9.9 Score=29.56 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCc----c-hHHHHHHHHHHHHHHHHhhhc
Q 036936 10 QFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGG----E-RNDRRKRGREFHIMAKRATEE 84 (110)
Q Consensus 10 Q~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~e----e-g~~~r~~a~~l~~~~~~a~~~ 84 (110)
|..|+.++.+. ++..++-- ..++.+.|.+.+..++. +. + -+.+++...++++. ..+
T Consensus 311 ~~~~~nil~~~-~~~pel~q-------------~~~~~~~l~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~----l~~ 371 (385)
T TIGR00215 311 YISLPNILANR-LLVPELLQ-------------EECTPHPLAIALLLLLE-NGLKAYKEMHRERQFFEELRQR----IYC 371 (385)
T ss_pred eeeccHHhcCC-ccchhhcC-------------CCCCHHHHHHHHHHHhc-CCcccHHHHHHHHHHHHHHHHH----hcC
Confidence 66688888764 66555432 35899999999999995 54 2 23455555554444 355
Q ss_pred CCcHHHHHH
Q 036936 85 TGSSSLMIK 93 (110)
Q Consensus 85 gGsS~~~l~ 93 (110)
+|.|.+..+
T Consensus 372 ~~~~~~~a~ 380 (385)
T TIGR00215 372 NADSERAAQ 380 (385)
T ss_pred CCHHHHHHH
Confidence 666665444
No 38
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=64.65 E-value=54 Score=25.70 Aligned_cols=45 Identities=16% Similarity=0.131 Sum_probs=27.8
Q ss_pred CeecccccchhHHHHHHHHHH---cceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCc
Q 036936 1 MITWPLFGDQFWNEKLIVQVL---NIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGG 62 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~---giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~e 62 (110)
+|..|.-.-|+ |+.++.... |-++.+.. .+.+.+.+++..++. ++
T Consensus 318 ~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~---------------~~~~~l~~~l~~ll~-d~ 365 (396)
T TIGR03492 318 VIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS---------------KNPEQAAQVVRQLLA-DP 365 (396)
T ss_pred EEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC---------------CCHHHHHHHHHHHHc-CH
Confidence 35566545565 998876532 33433322 233899999999994 54
No 39
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=63.67 E-value=60 Score=24.59 Aligned_cols=71 Identities=11% Similarity=0.096 Sum_probs=40.6
Q ss_pred ccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhhhc
Q 036936 5 PLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKRATEE 84 (110)
Q Consensus 5 P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~a~~~ 84 (110)
|.-+.|..|+.++.+ .|.++.. -+.+++.++|..+++ ++ ..++ +|++.++... .
T Consensus 301 ~~~g~~~~n~~~~~~-~G~~~~~-----------------~~~~~l~~~i~~ll~-~~---~~~~---~m~~~~~~~~-~ 354 (380)
T PRK13609 301 PVPGQEKENAMYFER-KGAAVVI-----------------RDDEEVFAKTEALLQ-DD---MKLL---QMKEAMKSLY-L 354 (380)
T ss_pred CCCCcchHHHHHHHh-CCcEEEE-----------------CCHHHHHHHHHHHHC-CH---HHHH---HHHHHHHHhC-C
Confidence 444556788888875 3776643 145789999999994 54 3332 3333433322 3
Q ss_pred CCcHHHHHHHHHHHHhC
Q 036936 85 TGSSSLMIKLLIQDIMQ 101 (110)
Q Consensus 85 gGsS~~~l~~~v~~l~~ 101 (110)
.-++..-++.+.+.+..
T Consensus 355 ~~s~~~i~~~i~~~~~~ 371 (380)
T PRK13609 355 PEPADHIVDDILAENHV 371 (380)
T ss_pred CchHHHHHHHHHHhhhh
Confidence 34555555555554433
No 40
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=62.77 E-value=5.7 Score=25.89 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=20.1
Q ss_pred CcchHHHHHHHHHHHHHHHHhhhcCCc
Q 036936 61 GGERNDRRKRGREFHIMAKRATEETGS 87 (110)
Q Consensus 61 ~eeg~~~r~~a~~l~~~~~~a~~~gGs 87 (110)
+++..++|.|+..+=+.+++.+...|.
T Consensus 36 ~~e~~~lR~r~~~~Lk~~r~rl~~~~d 62 (104)
T COG4575 36 GDEAEELRSKAESALKEARDRLGDTGD 62 (104)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456678888888888888888776653
No 41
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=55.34 E-value=7.7 Score=30.48 Aligned_cols=65 Identities=14% Similarity=0.034 Sum_probs=36.4
Q ss_pred CeecccccchhHHHHHHHH------HHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhccCcch-HHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQ------VLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDEGGER-NDRRKRGRE 73 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~------~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~~eeg-~~~r~~a~~ 73 (110)
++|||++.|+.-|.-+.+= .|=++++.... .-......-+...|+++. +.+|| +.+|+.+.+
T Consensus 28 ~~~~pfls~~qk~y~~f~f~~iss~gwff~i~~re~----------qlk~aa~~llq~kirk~~-e~~eglr~i~es~~e 96 (401)
T PF06785_consen 28 LVCYPFLSDSQKNYGYFVFSIISSLGWFFAIGRREK----------QLKTAAGQLLQTKIRKIT-EKDEGLRKIRESVEE 96 (401)
T ss_pred HhHhhhcCHHHHhcceeehHHHHHhHHHHHhhHHHH----------HHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 4799999999877654321 12233332211 011123345678899999 46777 346666655
Q ss_pred HHH
Q 036936 74 FHI 76 (110)
Q Consensus 74 l~~ 76 (110)
-..
T Consensus 97 ~q~ 99 (401)
T PF06785_consen 97 RQQ 99 (401)
T ss_pred HHH
Confidence 443
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=54.76 E-value=95 Score=23.77 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=27.1
Q ss_pred eecccccch-hHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHhc
Q 036936 2 ITWPLFGDQ-FWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMD 59 (110)
Q Consensus 2 i~~P~~~DQ-~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~ 59 (110)
|+.|....| ..|+.++++. |.|+.+ -+.+.+..+|..++.
T Consensus 306 I~~~~~pgqe~gn~~~i~~~-g~g~~~-----------------~~~~~la~~i~~ll~ 346 (382)
T PLN02605 306 ILNGYIPGQEEGNVPYVVDN-GFGAFS-----------------ESPKEIARIVAEWFG 346 (382)
T ss_pred EEecCCCccchhhHHHHHhC-Cceeec-----------------CCHHHHHHHHHHHHc
Confidence 333333345 4799999864 777643 256789999999994
No 43
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=54.65 E-value=31 Score=22.01 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhCC
Q 036936 45 VKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKRATEETGSSSLMIKLLIQDIMQP 102 (110)
Q Consensus 45 v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~l~~~ 102 (110)
||.+.|..+...|...|. +=++..+++.+ |+.|...+.++++.++..
T Consensus 1 IT~e~V~~Aa~~L~~~G~-----~pT~~~Vr~~l------G~GS~~ti~~~l~~w~~~ 47 (120)
T PF11740_consen 1 ITYEDVIEAADELLAAGK-----KPTVRAVRERL------GGGSMSTISKHLKEWREE 47 (120)
T ss_pred CcHHHHHHHHHHHHHcCC-----CCCHHHHHHHH------CCCCHHHHHHHHHHHHHh
Confidence 467788888888874221 23455555543 445577888888877764
No 44
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=50.60 E-value=1.2e+02 Score=23.52 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=13.0
Q ss_pred cHHHHHHHHHHHhccCc
Q 036936 46 KKEDVVKAINILMDEGG 62 (110)
Q Consensus 46 ~~e~i~~av~~lm~~~e 62 (110)
+.+++..+|..+++ ++
T Consensus 374 d~~~La~~l~~ll~-~~ 389 (425)
T PRK05749 374 DAEDLAKAVTYLLT-DP 389 (425)
T ss_pred CHHHHHHHHHHHhc-CH
Confidence 46789999999994 54
No 45
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=49.31 E-value=66 Score=24.22 Aligned_cols=44 Identities=9% Similarity=0.050 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 036936 47 KEDVVKAINILMDEGGERNDRRKRGREFHIMAKRATEETGSSSLMIKLLI 96 (110)
Q Consensus 47 ~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v 96 (110)
-+++.+++..+. .++-..+++|++++++..+. |---...|.+++
T Consensus 287 ~~el~~~l~~~~--~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~ 330 (333)
T PRK09814 287 LEELPEIIDNIT--EEEYQEMVENVKKISKLLRN----GYFTKKALVDAI 330 (333)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHH
Confidence 357888888754 35455789999999988763 444444444444
No 46
>smart00526 H15 Domain in histone families 1 and 5.
Probab=47.21 E-value=27 Score=20.14 Aligned_cols=15 Identities=40% Similarity=0.392 Sum_probs=10.7
Q ss_pred cCCcHHHHHHHHHHH
Q 036936 84 ETGSSSLMIKLLIQD 98 (110)
Q Consensus 84 ~gGsS~~~l~~~v~~ 98 (110)
++|||...+.+||+.
T Consensus 21 r~GsS~~aI~kyi~~ 35 (66)
T smart00526 21 RKGSSLQAIKKYIEA 35 (66)
T ss_pred CCCCCHHHHHHHHHH
Confidence 467777777777765
No 47
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=45.82 E-value=46 Score=20.37 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhCC
Q 036936 46 KKEDVVKAINILMDEGGERNDRRKRGREFHIMAKRATEETGSSSLMIKLLIQDIMQP 102 (110)
Q Consensus 46 ~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~l~~~ 102 (110)
..+.|..+|+.+- .. -.+...|++.+......|-+...+++.|+...+..
T Consensus 29 ~SEvvR~aLRlle--~~-----e~~~~~Lr~~l~~g~~sG~~~~~~~~~~~~~~~~~ 78 (80)
T PF03693_consen 29 ASEVVREALRLLE--ER-----EAKLEALREALQEGLESGESEPFDMDDILARARRK 78 (80)
T ss_dssp HHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHCT-EESS--HHHHHHHCCH-
T ss_pred HHHHHHHHHHHHH--HH-----HHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhh
Confidence 4566677777544 11 23456688887776655656557888888876654
No 48
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=43.27 E-value=25 Score=24.53 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=12.2
Q ss_pred cccHHHHHHHHHHHhc
Q 036936 44 LVKKEDVVKAINILMD 59 (110)
Q Consensus 44 ~v~~e~i~~av~~lm~ 59 (110)
.||+|+|.++|..+++
T Consensus 116 ~VT~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 116 VVTPEQIEAAVEKYIE 131 (164)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHH
Confidence 4799999999999995
No 49
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=41.92 E-value=74 Score=18.84 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHhccCc
Q 036936 46 KKEDVVKAINILMDEGG 62 (110)
Q Consensus 46 ~~e~i~~av~~lm~~~e 62 (110)
+.+++..+|..++. ++
T Consensus 48 ~~~el~~~i~~ll~-~~ 63 (92)
T PF13524_consen 48 DPEELAEKIEYLLE-NP 63 (92)
T ss_pred CHHHHHHHHHHHHC-CH
Confidence 68899999999995 55
No 50
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=38.98 E-value=1.7e+02 Score=22.03 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=26.3
Q ss_pred cccHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHH
Q 036936 44 LVKKEDVVKAINILMDEGGERNDRRKRGREFHIMAKRATEETGSSSLMIKLLI 96 (110)
Q Consensus 44 ~v~~e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v 96 (110)
..+.+++..+|..++. ++ ..++.+.+-...++... ..|++...++.+.
T Consensus 325 ~~~~~~l~~~i~~ll~-~~---~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~ 372 (380)
T PRK00025 325 EATPEKLARALLPLLA-DG---ARRQALLEGFTELHQQL-RCGADERAAQAVL 372 (380)
T ss_pred CCCHHHHHHHHHHHhc-CH---HHHHHHHHHHHHHHHHh-CCCHHHHHHHHHH
Confidence 4578899999999994 55 34433333322233333 3445444444433
No 51
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=35.84 E-value=43 Score=21.95 Aligned_cols=14 Identities=29% Similarity=0.508 Sum_probs=12.3
Q ss_pred cHHHHHHHHHHHhc
Q 036936 46 KKEDVVKAINILMD 59 (110)
Q Consensus 46 ~~e~i~~av~~lm~ 59 (110)
+.+++..+|..++.
T Consensus 144 ~~~~l~~~i~~~l~ 157 (172)
T PF00534_consen 144 DIEELADAIEKLLN 157 (172)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC
Confidence 67899999999995
No 52
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=33.45 E-value=2.1e+02 Score=21.51 Aligned_cols=61 Identities=13% Similarity=0.259 Sum_probs=43.6
Q ss_pred cceEEecccCCCCCCccchhcccccHHHHHHHHHHHhcc-C--cchHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHH
Q 036936 22 NIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILMDE-G--GERNDRRKRGREFHIMAKRATEETGSSSLMIKLLIQD 98 (110)
Q Consensus 22 giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm~~-~--eeg~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~ 98 (110)
++|+.|... .++.++--+.|+..... + -.-+.++.+|.+++-. .||.|-+...+|++.
T Consensus 184 RFGL~l~F~-------------~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~------rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 184 RFGLWLSFY-------------PPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR------RGGRSGRTARQFIDD 244 (249)
T ss_pred hCCcEEEec-------------CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH------cCCCCHHHHHHHHHH
Confidence 578888764 47888888888887720 0 0013677777777653 699999999999998
Q ss_pred HhC
Q 036936 99 IMQ 101 (110)
Q Consensus 99 l~~ 101 (110)
+..
T Consensus 245 l~g 247 (249)
T PF05673_consen 245 LAG 247 (249)
T ss_pred Hhc
Confidence 864
No 53
>PLN02859 glutamine-tRNA ligase
Probab=32.75 E-value=1e+02 Score=26.96 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=36.2
Q ss_pred cccHHHHHHHHHHHhccCcc----hHHHHHHHHHHHHHHHHhh--hcCCcHHHHHHHHHHHHhCC
Q 036936 44 LVKKEDVVKAINILMDEGGE----RNDRRKRGREFHIMAKRAT--EETGSSSLMIKLLIQDIMQP 102 (110)
Q Consensus 44 ~v~~e~i~~av~~lm~~~ee----g~~~r~~a~~l~~~~~~a~--~~gGsS~~~l~~~v~~l~~~ 102 (110)
.||.++|.++|..+++ ... -+.|+.|+..+-..++..+ +++-.-...++..+-++...
T Consensus 118 ~VT~EqI~~~V~~~i~-~~k~~il~~RY~~n~g~ll~~~r~~Lkwad~~~~k~~id~~~~~llg~ 181 (788)
T PLN02859 118 VVSPEDIEAAVNEVFE-ENKEKILEQRYRTNVGDLLGQVRKRLPWADPKIVKKLIDKKLYELLGE 181 (788)
T ss_pred EECHHHHHHHHHHHHH-hhHHHHHHhcccccHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhcCC
Confidence 4789999999999995 321 2356666777777777653 34444344566555555543
No 54
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=32.19 E-value=24 Score=22.56 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=26.0
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHHh
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINILM 58 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~lm 58 (110)
+|-||.+.|...--+ -|-+|...-. -...+.++|+.+++++=
T Consensus 4 ~vlwp~YfDs~~srs-------~GRrvpk~la---------V~~P~~~ei~~a~~~LG 45 (93)
T COG1400 4 IVLWPAYFDSDLSRS-------EGRRVPKELA---------VENPSLEEIAEALRELG 45 (93)
T ss_pred eEEeehhhcCccChh-------hccccchhhc---------ccCCCHHHHHHHHHHcC
Confidence 478999999864322 3334433210 12468899999998873
No 55
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.34 E-value=81 Score=25.88 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCcH
Q 036936 65 NDRRKRGREFHIMAKRATEETGSS 88 (110)
Q Consensus 65 ~~~r~~a~~l~~~~~~a~~~gGsS 88 (110)
+++|+++++|...-+++.+.||+.
T Consensus 157 q~mkrKaKElqr~r~ea~rrgg~~ 180 (512)
T KOG2635|consen 157 QEMKRKAKELQRARKEAERRGGSL 180 (512)
T ss_pred HHHHHHHHHHHHHHHhhhcccccc
Confidence 469999999988888888888643
No 56
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=31.19 E-value=83 Score=17.99 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhCCC
Q 036936 48 EDVVKAINILMDEGGERNDRRKRGREFHIMAKRATEETGSSSLMIKLLIQDIMQPP 103 (110)
Q Consensus 48 e~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~l~~~~ 103 (110)
.++...|..++. .+..+...|+..+-.-+.+=|+.-..|++-|.++....
T Consensus 2 ~elt~~v~~lL~------qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~qa 51 (54)
T PF06825_consen 2 QELTAFVQNLLQ------QMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQA 51 (54)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-------
T ss_pred hHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 467788888883 68888888888877766666666666777776665543
No 57
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=28.88 E-value=55 Score=23.11 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhCCC-CCCCCC
Q 036936 70 RGREFHIMAKRATEETGSSSLMIKLLIQDIMQPP-HGDDQH 109 (110)
Q Consensus 70 ~a~~l~~~~~~a~~~gGsS~~~l~~~v~~l~~~~-~~~~~~ 109 (110)
...++++.+..|..+.|+....|-.+++.|..+. ...|.|
T Consensus 127 ~~~~~A~~Ia~a~G~~G~N~eYL~~l~~~L~~~gp~i~D~~ 167 (178)
T PF04752_consen 127 PLEEIARIIATASGPSGSNREYLFNLAEALRELGPGIRDPH 167 (178)
T ss_pred CHHHHHHHHhheECcCcCCHHHHHHHHHHHHHhCCCCCChH
Confidence 4567777777778888999999999999998874 445554
No 58
>PF03832 WSK: WSK motif; InterPro: IPR001573 Cell signalling mediated via GPCRs (G-protein-coupled receptors) involves the assembly of receptors, G-proteins, effectors and downstream elements into complexes that approach in design 'solid-state' signalling devices. Scaffold molecules, such as the AKAPs (A-kinase anchoring proteins), were discovered more than a decade ago and represent dynamic platforms, enabling multivalent signalling []. This family of functionally related proteins is classified on the basis of their ability to associate with the PKA holoenzyme inside cells. A shared property of most, if not all, AKAPs is the ability to form multivalent signal transduction complexes. Each anchoring protein contains at least two functional motifs []. The conserved PKA binding motif forms an amphipathic helix of 14-18 residues that interacts with hydrophobic determinants located in the extreme N terminus of the regulatory subunit dimmer. The subcellular address of each AKAP is encoded by a unique targeting motif. Gravin, an autoantigen recognised by serum from myasthenia gravis patients contains 3 repeats of this domain []. The WSK motif is short motif, named after three conserved residues found in the WXSXK motif, found in protein kinase A anchoring proteins. ; GO: 0006605 protein targeting, 0007165 signal transduction
Probab=25.64 E-value=49 Score=16.80 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=12.2
Q ss_pred cCCcHHHHHHHHHHH
Q 036936 84 ETGSSSLMIKLLIQD 98 (110)
Q Consensus 84 ~gGsS~~~l~~~v~~ 98 (110)
++++++.++.+||--
T Consensus 2 ~~~~~W~S~KrlVt~ 16 (31)
T PF03832_consen 2 EPGSTWASFKRLVTP 16 (31)
T ss_pred CCcchhHHHHhhcCc
Confidence 578889999999854
No 59
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=25.39 E-value=30 Score=26.52 Aligned_cols=12 Identities=42% Similarity=0.877 Sum_probs=9.4
Q ss_pred eecccccchhHH
Q 036936 2 ITWPLFGDQFWN 13 (110)
Q Consensus 2 i~~P~~~DQ~~N 13 (110)
||||.||=+..+
T Consensus 77 ICwPWFG~~~~~ 88 (287)
T COG0676 77 ICWPWFGPLAQQ 88 (287)
T ss_pred EEEeccCccCCC
Confidence 799999876553
No 60
>PRK03745 signal recognition particle protein Srp19; Provisional
Probab=25.17 E-value=38 Score=21.85 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=23.4
Q ss_pred CeecccccchhHHHHHHHHHHcceEEecccCCCCCCccchhcccccHHHHHHHHHHH
Q 036936 1 MITWPLFGDQFWNEKLIVQVLNIGERIGVEVPLDFGKEEEIGVLVKKEDVVKAINIL 57 (110)
Q Consensus 1 mi~~P~~~DQ~~Na~~v~~~~giGv~v~~~~~~~~~~~~~~~~~v~~e~i~~av~~l 57 (110)
+|.||.+.|-...-. =|-+|..... -...+-.+|.++++.+
T Consensus 4 ~vIyP~Y~D~~~sr~-------eGRrv~k~~a---------V~~P~~~EI~~a~~~l 44 (100)
T PRK03745 4 FVVWPSELDSRLSRK-------YGRIVPKNLA---------VERPTLEEIVDAAEAL 44 (100)
T ss_pred EEEeeccccCcCChh-------hcCccCHHHc---------ccCCCHHHHHHHHHHc
Confidence 478999888554322 2333332210 0135788888888765
No 61
>COG5570 Uncharacterized small protein [Function unknown]
Probab=23.48 E-value=31 Score=19.82 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCC
Q 036936 89 SLMIKLLIQDIMQPPHGDDQH 109 (110)
Q Consensus 89 ~~~l~~~v~~l~~~~~~~~~~ 109 (110)
+.+|++=|++..+.+.|||.+
T Consensus 14 Hg~le~ei~ea~n~Ps~dd~~ 34 (57)
T COG5570 14 HGNLEREIQEAMNSPSSDDLA 34 (57)
T ss_pred hchHHHHHHHHhcCCCcchHH
Confidence 345555566666666665543
No 62
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=22.61 E-value=99 Score=25.96 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhhhc-CCcHHHHHHHHHHH
Q 036936 49 DVVKAINILMDEGGERNDRRKRGREFHIMAKRATEE-TGSSSLMIKLLIQD 98 (110)
Q Consensus 49 ~i~~av~~lm~~~eeg~~~r~~a~~l~~~~~~a~~~-gGsS~~~l~~~v~~ 98 (110)
.+...+.++|.+.+ ++|.+++++...+.+.+.+ ..-|-....+.+++
T Consensus 25 ~~~av~~~~~~~~p---elr~~~~ei~~~v~~~v~~vn~ms~ee~~~~l~~ 72 (567)
T PRK04156 25 NVKAVMGKIMGENP---ELRSKAKEIIPIVKEVVEEVNSLSLEEQRERLEE 72 (567)
T ss_pred CCcchhhhhhccCh---hhhhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 44455667886555 7999999999999998864 44444444444444
No 63
>cd00073 H15 linker histone 1 and histone 5 domains; the basic subunit of chromatin is the nucleosome, consisting of an octamer of core histones, two full turns of DNA, a linker histone (H1 or H5) and a variable length of linker DNA; H1/H5 are chromatin-associated proteins that bind to the exterior of nucleosomes and dramatically stabilize the highly condensed states of chromatin fibers; stabilization of higher order folding occurs through electrostatic neutralization of the linker DNA segments, through a highly positively charged carboxy- terminal domain known as the AKP helix (Ala, Lys, Pro); thought to be involved in specific protein-protein and protein-DNA interactions and play a role in suppressing core histone tail domain acetylation in the chromatin fiber
Probab=22.41 E-value=1.5e+02 Score=18.14 Aligned_cols=15 Identities=40% Similarity=0.392 Sum_probs=8.5
Q ss_pred cCCcHHHHHHHHHHH
Q 036936 84 ETGSSSLMIKLLIQD 98 (110)
Q Consensus 84 ~gGsS~~~l~~~v~~ 98 (110)
+.|||...|.+||+.
T Consensus 21 r~GsS~~aI~kyI~~ 35 (88)
T cd00073 21 RKGSSLQAIKKYIEA 35 (88)
T ss_pred CCCcCHHHHHHHHHH
Confidence 355666666665553
No 64
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=20.80 E-value=1e+02 Score=18.23 Aligned_cols=15 Identities=40% Similarity=0.388 Sum_probs=12.3
Q ss_pred cCCcHHHHHHHHHHH
Q 036936 84 ETGSSSLMIKLLIQD 98 (110)
Q Consensus 84 ~gGsS~~~l~~~v~~ 98 (110)
+.|||...+.++|+.
T Consensus 19 r~GsS~~aI~kyI~~ 33 (77)
T PF00538_consen 19 RKGSSLQAIKKYIKA 33 (77)
T ss_dssp SSSEEHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 478888888888887
Done!