Query 036937
Match_columns 497
No_of_seqs 207 out of 1468
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 06:53:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 9E-140 2E-144 1089.9 41.1 470 25-496 31-509 (524)
2 PLN02849 beta-glucosidase 100.0 2E-132 5E-137 1063.3 46.8 458 23-496 22-483 (503)
3 PLN02998 beta-glucosidase 100.0 1E-131 3E-136 1055.9 45.7 457 26-495 26-487 (497)
4 PLN02814 beta-glucosidase 100.0 3E-131 5E-136 1055.3 46.0 455 26-496 23-483 (504)
5 PRK13511 6-phospho-beta-galact 100.0 6E-129 1E-133 1034.2 46.1 448 29-496 3-466 (469)
6 TIGR01233 lacG 6-phospho-beta- 100.0 1E-128 3E-133 1029.5 46.3 442 30-496 3-464 (467)
7 COG2723 BglB Beta-glucosidase/ 100.0 3E-128 6E-133 997.8 40.5 444 29-496 2-453 (460)
8 PF00232 Glyco_hydro_1: Glycos 100.0 4E-129 8E-134 1036.0 32.3 446 29-496 3-453 (455)
9 PRK09593 arb 6-phospho-beta-gl 100.0 2E-127 5E-132 1021.7 45.7 444 28-496 3-473 (478)
10 PRK09589 celA 6-phospho-beta-g 100.0 1E-126 3E-131 1015.7 46.0 442 30-496 3-472 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 5E-126 1E-130 1010.2 46.4 444 27-496 2-473 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 2E-125 4E-130 1004.7 46.2 442 30-496 3-469 (474)
13 TIGR03356 BGL beta-galactosida 100.0 5E-123 1E-127 979.0 42.1 427 31-489 1-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.6 1.8E-13 3.8E-18 135.8 25.0 250 105-488 1-253 (254)
15 PF00150 Cellulase: Cellulase 99.4 1.3E-11 2.8E-16 122.8 17.9 109 85-196 22-134 (281)
16 PF02449 Glyco_hydro_42: Beta- 99.3 6.6E-12 1.4E-16 131.4 8.6 109 84-196 10-141 (374)
17 PF07745 Glyco_hydro_53: Glyco 99.2 7.7E-09 1.7E-13 105.8 24.8 247 87-455 27-297 (332)
18 PF00331 Glyco_hydro_10: Glyco 99.1 3.1E-08 6.7E-13 101.7 23.7 271 101-491 40-318 (320)
19 PF01229 Glyco_hydro_39: Glyco 99.0 7.2E-09 1.6E-13 112.2 14.7 292 85-492 40-359 (486)
20 PRK10150 beta-D-glucuronidase; 99.0 1.3E-07 2.8E-12 105.2 24.9 262 84-494 313-593 (604)
21 COG3693 XynA Beta-1,4-xylanase 98.8 1.9E-06 4E-11 86.4 22.5 272 103-496 65-344 (345)
22 COG1874 LacA Beta-galactosidas 98.4 3.3E-07 7.1E-12 101.2 7.2 119 85-207 31-176 (673)
23 PF02836 Glyco_hydro_2_C: Glyc 98.0 0.00045 9.7E-09 70.1 19.3 92 83-193 35-132 (298)
24 COG2730 BglC Endoglucanase [Ca 97.7 0.00011 2.5E-09 77.9 8.7 109 87-195 76-193 (407)
25 COG3867 Arabinogalactan endo-1 97.4 0.036 7.8E-07 55.5 21.3 249 88-454 67-342 (403)
26 PF01301 Glyco_hydro_35: Glyco 97.4 0.00025 5.4E-09 72.9 6.0 97 85-182 25-132 (319)
27 PF01373 Glyco_hydro_14: Glyco 96.9 0.0014 3E-08 68.5 5.8 107 83-195 15-152 (402)
28 PLN03059 beta-galactosidase; P 96.8 0.0051 1.1E-07 69.8 9.7 95 84-180 59-165 (840)
29 PLN02161 beta-amylase 96.6 0.01 2.2E-07 63.4 9.4 111 80-195 113-262 (531)
30 PLN02803 beta-amylase 96.5 0.011 2.3E-07 63.6 9.2 108 83-195 106-252 (548)
31 PLN00197 beta-amylase; Provisi 96.4 0.014 3E-07 62.9 9.4 108 83-195 126-272 (573)
32 PLN02801 beta-amylase 96.2 0.026 5.6E-07 60.4 10.1 110 82-195 35-183 (517)
33 PF14587 Glyco_hydr_30_2: O-Gl 96.1 0.012 2.5E-07 61.5 6.7 101 94-195 57-185 (384)
34 PF11790 Glyco_hydro_cc: Glyco 96.1 0.03 6.6E-07 55.1 9.3 66 383-458 151-216 (239)
35 PLN02905 beta-amylase 96.0 0.044 9.5E-07 59.9 10.4 112 80-195 282-432 (702)
36 PF03198 Glyco_hydro_72: Gluca 96.0 0.15 3.3E-06 51.8 13.5 89 85-192 54-144 (314)
37 PF13204 DUF4038: Protein of u 95.9 0.042 9.1E-07 55.8 9.7 103 86-193 32-156 (289)
38 PLN02705 beta-amylase 95.8 0.038 8.3E-07 60.1 9.1 111 81-195 265-414 (681)
39 KOG0496 Beta-galactosidase [Ca 94.3 0.18 3.8E-06 55.7 8.7 95 85-180 50-155 (649)
40 PF14488 DUF4434: Domain of un 93.8 0.4 8.6E-06 44.7 9.2 102 84-194 20-131 (166)
41 PRK09525 lacZ beta-D-galactosi 91.7 0.59 1.3E-05 55.5 8.8 91 82-194 369-464 (1027)
42 COG3934 Endo-beta-mannanase [C 91.3 0.08 1.7E-06 56.2 1.0 109 86-195 28-150 (587)
43 PRK10340 ebgA cryptic beta-D-g 90.5 0.86 1.9E-05 54.2 8.7 89 83-193 354-450 (1021)
44 COG3250 LacZ Beta-galactosidas 87.9 2.5 5.4E-05 48.8 9.6 90 80-194 317-408 (808)
45 COG3664 XynB Beta-xylosidase [ 87.5 0.8 1.7E-05 48.0 4.8 99 93-196 14-117 (428)
46 smart00642 Aamy Alpha-amylase 86.4 1.7 3.7E-05 40.3 6.1 64 82-145 17-91 (166)
47 PF07488 Glyco_hydro_67M: Glyc 81.8 9.6 0.00021 38.8 9.3 87 83-182 56-150 (328)
48 PF00332 Glyco_hydro_17: Glyco 76.2 4.3 9.3E-05 41.7 5.2 82 385-475 212-302 (310)
49 PLN02361 alpha-amylase 76.1 7.6 0.00016 41.3 7.1 65 81-145 26-97 (401)
50 PF12891 Glyco_hydro_44: Glyco 75.3 7.9 0.00017 38.1 6.5 74 124-197 24-139 (239)
51 PRK12313 glycogen branching en 72.5 14 0.0003 41.7 8.5 93 83-181 169-302 (633)
52 PF10566 Glyco_hydro_97: Glyco 72.3 22 0.00048 35.8 9.0 119 57-179 9-149 (273)
53 PF14871 GHL6: Hypothetical gl 71.6 17 0.00037 32.5 7.2 56 89-145 5-65 (132)
54 TIGR02402 trehalose_TreZ malto 70.8 17 0.00037 40.2 8.6 57 83-145 110-181 (542)
55 PF00128 Alpha-amylase: Alpha 69.3 11 0.00024 37.2 6.2 57 87-145 7-73 (316)
56 PRK05402 glycogen branching en 69.0 25 0.00054 40.5 9.6 93 83-181 264-397 (726)
57 TIGR00612 ispG_gcpE 1-hydroxy- 68.6 34 0.00073 35.4 9.4 88 75-176 73-160 (346)
58 PLN00196 alpha-amylase; Provis 67.6 12 0.00027 40.1 6.4 64 82-145 42-113 (428)
59 cd07945 DRE_TIM_CMS Leptospira 66.9 15 0.00032 37.2 6.5 81 87-178 77-158 (280)
60 PRK09441 cytoplasmic alpha-amy 66.1 11 0.00025 40.8 6.0 65 81-145 19-102 (479)
61 cd03174 DRE_TIM_metallolyase D 65.9 17 0.00037 35.6 6.7 79 87-177 77-156 (265)
62 PRK05799 coproporphyrinogen II 65.4 17 0.00037 38.0 7.0 93 87-196 99-195 (374)
63 TIGR02403 trehalose_treC alpha 64.4 11 0.00024 41.8 5.4 63 83-145 26-96 (543)
64 TIGR02090 LEU1_arch isopropylm 64.4 18 0.00038 38.0 6.8 60 86-145 73-133 (363)
65 PRK10933 trehalose-6-phosphate 61.4 13 0.00029 41.2 5.5 61 83-145 32-102 (551)
66 cd07948 DRE_TIM_HCS Saccharomy 61.3 13 0.00029 37.1 4.9 59 87-145 74-133 (262)
67 TIGR01515 branching_enzym alph 61.2 48 0.001 37.3 9.9 93 83-181 155-288 (613)
68 COG5309 Exo-beta-1,3-glucanase 61.2 30 0.00065 34.7 7.1 53 77-145 56-108 (305)
69 cd07939 DRE_TIM_NifV Streptomy 60.9 12 0.00025 37.2 4.5 58 87-144 72-130 (259)
70 PF02638 DUF187: Glycosyl hydr 60.2 44 0.00096 34.2 8.7 98 83-181 18-154 (311)
71 PLN02447 1,4-alpha-glucan-bran 59.8 18 0.00038 41.7 6.1 93 82-180 248-382 (758)
72 PLN02784 alpha-amylase 59.7 26 0.00055 40.8 7.3 65 81-145 518-589 (894)
73 PLN02746 hydroxymethylglutaryl 59.6 27 0.00058 36.5 7.0 84 86-178 123-208 (347)
74 PF02055 Glyco_hydro_30: O-Gly 59.0 50 0.0011 36.2 9.3 98 388-493 319-420 (496)
75 PRK14040 oxaloacetate decarbox 58.5 32 0.00068 38.6 7.7 55 83-150 91-150 (593)
76 COG1523 PulA Type II secretory 57.9 21 0.00045 40.7 6.2 56 90-145 206-286 (697)
77 PRK14511 maltooligosyl trehalo 57.5 31 0.00067 40.3 7.6 57 83-145 19-90 (879)
78 PRK14705 glycogen branching en 57.2 57 0.0012 39.7 9.9 91 86-181 767-897 (1224)
79 PRK14041 oxaloacetate decarbox 57.0 34 0.00075 37.2 7.5 55 83-150 89-148 (467)
80 PRK09505 malS alpha-amylase; R 56.9 20 0.00044 40.8 6.0 60 86-145 232-313 (683)
81 PRK09058 coproporphyrinogen II 56.6 44 0.00096 36.1 8.3 105 87-207 163-270 (449)
82 TIGR02456 treS_nterm trehalose 56.6 17 0.00036 40.2 5.2 57 85-145 29-97 (539)
83 COG3589 Uncharacterized conser 56.3 41 0.00088 34.8 7.4 71 88-172 20-90 (360)
84 PRK05692 hydroxymethylglutaryl 56.1 38 0.00083 34.3 7.3 85 86-179 81-167 (287)
85 cd06543 GH18_PF-ChiA-like PF-C 55.4 55 0.0012 33.3 8.3 84 91-181 19-104 (294)
86 PF03659 Glyco_hydro_71: Glyco 55.4 47 0.001 35.2 8.0 51 84-144 17-67 (386)
87 COG3534 AbfA Alpha-L-arabinofu 55.3 63 0.0014 34.8 8.8 87 86-193 50-174 (501)
88 TIGR00433 bioB biotin syntheta 54.3 34 0.00074 34.3 6.7 55 87-144 123-178 (296)
89 KOG2233 Alpha-N-acetylglucosam 54.2 41 0.0009 36.4 7.2 111 83-193 77-248 (666)
90 PRK12581 oxaloacetate decarbox 53.7 25 0.00054 38.2 5.8 56 82-150 98-158 (468)
91 cd06592 GH31_glucosidase_KIAA1 53.4 61 0.0013 32.9 8.4 107 85-194 31-167 (303)
92 TIGR01210 conserved hypothetic 52.9 77 0.0017 32.4 9.0 108 87-208 117-229 (313)
93 PRK10785 maltodextrin glucosid 52.5 25 0.00054 39.5 5.7 56 86-145 181-247 (598)
94 PRK03705 glycogen debranching 52.1 32 0.00068 39.2 6.5 55 90-145 185-263 (658)
95 TIGR02660 nifV_homocitr homoci 51.3 41 0.0009 35.2 6.9 78 87-178 75-153 (365)
96 cd07938 DRE_TIM_HMGL 3-hydroxy 51.2 45 0.00098 33.5 6.9 83 87-178 76-160 (274)
97 cd06593 GH31_xylosidase_YicI Y 50.9 1E+02 0.0023 31.2 9.6 106 85-193 25-160 (308)
98 cd06602 GH31_MGAM_SI_GAA This 50.5 82 0.0018 32.7 8.8 69 127-196 69-169 (339)
99 COG0821 gcpE 1-hydroxy-2-methy 50.3 1.2E+02 0.0026 31.5 9.5 85 78-176 78-162 (361)
100 PF12876 Cellulase-like: Sugar 50.1 9.2 0.0002 31.3 1.4 19 176-194 1-22 (88)
101 PRK12568 glycogen branching en 49.1 30 0.00064 39.8 5.7 94 83-181 268-401 (730)
102 cd06601 GH31_lyase_GLase GLase 49.1 1.1E+02 0.0023 31.8 9.4 70 127-198 67-139 (332)
103 PRK11858 aksA trans-homoaconit 49.0 42 0.0009 35.4 6.5 58 87-144 78-136 (378)
104 PRK08599 coproporphyrinogen II 48.7 76 0.0016 33.2 8.4 61 87-151 100-163 (377)
105 cd07937 DRE_TIM_PC_TC_5S Pyruv 48.4 99 0.0022 31.0 8.9 68 86-178 93-160 (275)
106 PRK12858 tagatose 1,6-diphosph 48.3 63 0.0014 33.7 7.5 53 90-145 112-164 (340)
107 PRK07379 coproporphyrinogen II 48.2 87 0.0019 33.2 8.8 103 87-206 115-221 (400)
108 PRK12331 oxaloacetate decarbox 47.0 73 0.0016 34.5 8.0 51 87-150 99-149 (448)
109 PRK12399 tagatose 1,6-diphosph 46.5 84 0.0018 32.4 7.9 59 90-151 111-169 (324)
110 PLN02960 alpha-amylase 46.5 37 0.0008 39.7 5.9 94 82-181 414-549 (897)
111 PRK14510 putative bifunctional 46.0 26 0.00056 42.8 4.8 64 82-145 183-268 (1221)
112 PRK04161 tagatose 1,6-diphosph 45.2 91 0.002 32.2 7.9 60 89-151 112-171 (329)
113 TIGR02401 trehalose_TreY malto 45.1 40 0.00086 39.2 5.9 57 83-145 15-86 (825)
114 TIGR01211 ELP3 histone acetylt 43.9 86 0.0019 34.7 8.1 106 87-209 206-317 (522)
115 cd06600 GH31_MGAM-like This fa 42.7 1.6E+02 0.0036 30.0 9.6 70 126-196 66-164 (317)
116 PRK14507 putative bifunctional 41.8 65 0.0014 40.5 7.3 60 83-148 757-833 (1693)
117 cd06591 GH31_xylosidase_XylS X 41.7 1.6E+02 0.0035 30.1 9.4 70 126-196 68-163 (319)
118 TIGR00539 hemN_rel putative ox 41.4 63 0.0014 33.6 6.4 60 87-151 100-163 (360)
119 PRK14706 glycogen branching en 41.4 1.6E+02 0.0034 33.5 9.9 89 91-181 175-299 (639)
120 cd07944 DRE_TIM_HOA_like 4-hyd 41.1 57 0.0012 32.6 5.8 65 87-178 85-149 (266)
121 COG1501 Alpha-glucosidases, fa 41.0 1E+02 0.0023 35.7 8.5 100 96-198 294-421 (772)
122 PRK05628 coproporphyrinogen II 40.7 1.5E+02 0.0032 31.0 9.1 93 87-196 108-204 (375)
123 PF02065 Melibiase: Melibiase; 40.7 1.8E+02 0.0039 31.0 9.6 92 85-181 59-183 (394)
124 cd07943 DRE_TIM_HOA 4-hydroxy- 39.8 1.2E+02 0.0026 30.0 7.9 46 87-145 88-133 (263)
125 PRK08195 4-hyroxy-2-oxovalerat 39.7 66 0.0014 33.4 6.1 68 87-182 91-158 (337)
126 cd07947 DRE_TIM_Re_CS Clostrid 39.6 95 0.0021 31.3 7.1 59 86-144 76-135 (279)
127 cd06603 GH31_GANC_GANAB_alpha 39.3 1.4E+02 0.003 30.8 8.5 71 127-197 67-167 (339)
128 cd07941 DRE_TIM_LeuA3 Desulfob 38.7 49 0.0011 33.1 4.9 80 88-178 82-162 (273)
129 cd06598 GH31_transferase_CtsZ 38.3 1.2E+02 0.0026 31.0 7.8 107 87-196 27-168 (317)
130 TIGR03217 4OH_2_O_val_ald 4-hy 37.8 1.4E+02 0.0031 30.9 8.2 46 87-145 90-135 (333)
131 cd02742 GH20_hexosaminidase Be 37.6 90 0.002 31.7 6.7 64 85-154 17-99 (303)
132 TIGR01108 oadA oxaloacetate de 37.4 1.2E+02 0.0026 34.0 8.1 93 86-195 93-205 (582)
133 TIGR03234 OH-pyruv-isom hydrox 37.2 84 0.0018 30.6 6.2 67 81-150 81-150 (254)
134 COG0366 AmyA Glycosidases [Car 36.7 44 0.00095 35.8 4.5 57 88-144 33-97 (505)
135 TIGR03471 HpnJ hopanoid biosyn 36.6 1.1E+02 0.0023 33.2 7.4 60 87-150 287-348 (472)
136 PF03511 Fanconi_A: Fanconi an 36.5 22 0.00047 27.4 1.5 39 108-148 19-57 (64)
137 PF05089 NAGLU: Alpha-N-acetyl 36.4 1.2E+02 0.0025 31.6 7.2 109 83-193 18-184 (333)
138 KOG0470 1,4-alpha-glucan branc 36.2 42 0.0009 38.2 4.2 64 83-146 253-333 (757)
139 PRK06294 coproporphyrinogen II 36.2 2E+02 0.0044 30.1 9.2 93 87-196 103-199 (370)
140 TIGR01212 radical SAM protein, 35.8 94 0.002 31.6 6.5 72 124-208 163-234 (302)
141 PLN02389 biotin synthase 35.3 1E+02 0.0022 32.6 6.8 58 85-145 176-234 (379)
142 TIGR02100 glgX_debranch glycog 34.4 78 0.0017 36.2 6.2 56 90-145 190-266 (688)
143 cd02874 GH18_CFLE_spore_hydrol 34.1 1.5E+02 0.0033 30.0 7.7 84 90-181 16-103 (313)
144 TIGR01232 lacD tagatose 1,6-di 33.2 1.3E+02 0.0027 31.2 6.7 60 89-151 111-170 (325)
145 PRK13398 3-deoxy-7-phosphohept 33.0 1.6E+02 0.0034 29.5 7.4 70 79-151 36-105 (266)
146 PF04914 DltD_C: DltD C-termin 33.0 1.5E+02 0.0032 26.4 6.5 54 124-184 36-92 (130)
147 PF09713 A_thal_3526: Plant pr 32.6 32 0.0007 25.9 1.8 35 127-172 16-51 (54)
148 cd06542 GH18_EndoS-like Endo-b 32.1 1.3E+02 0.0029 29.3 6.7 55 123-181 50-104 (255)
149 cd06545 GH18_3CO4_chitinase Th 31.6 1.3E+02 0.0027 29.6 6.5 72 104-180 27-98 (253)
150 cd06525 GH25_Lyc-like Lyc mura 31.6 3.5E+02 0.0076 25.0 9.2 18 166-183 102-119 (184)
151 TIGR02629 L_rham_iso_rhiz L-rh 31.0 4.6E+02 0.01 28.1 10.7 89 86-188 72-171 (412)
152 TIGR03581 EF_0839 conserved hy 30.6 1.4E+02 0.003 29.2 6.1 66 85-179 136-201 (236)
153 KOG1065 Maltase glucoamylase a 29.4 2.1E+02 0.0047 33.1 8.4 105 88-198 315-454 (805)
154 TIGR01589 A_thal_3526 uncharac 29.4 58 0.0013 24.8 2.7 36 127-173 19-55 (57)
155 PTZ00445 p36-lilke protein; Pr 29.3 1.1E+02 0.0024 29.7 5.4 55 90-145 35-99 (219)
156 cd06565 GH20_GcnA-like Glycosy 28.5 1.7E+02 0.0037 29.8 6.9 64 85-155 18-88 (301)
157 cd06604 GH31_glucosidase_II_Ma 28.3 3E+02 0.0066 28.3 8.9 67 127-196 67-163 (339)
158 PRK10340 ebgA cryptic beta-D-g 28.3 1.9E+02 0.0041 34.8 8.2 76 398-494 505-600 (1021)
159 PRK09856 fructoselysine 3-epim 28.0 85 0.0018 30.9 4.6 60 81-141 87-146 (275)
160 smart00729 Elp3 Elongator prot 27.8 3.2E+02 0.007 24.6 8.3 56 86-144 99-157 (216)
161 PRK13209 L-xylulose 5-phosphat 27.7 4.5E+02 0.0097 25.8 9.8 52 86-141 23-74 (283)
162 cd06568 GH20_SpHex_like A subg 27.3 2.1E+02 0.0046 29.5 7.5 64 85-154 19-102 (329)
163 PF01261 AP_endonuc_2: Xylose 27.2 73 0.0016 29.3 3.8 61 82-142 69-130 (213)
164 TIGR02104 pulA_typeI pullulana 27.2 1.5E+02 0.0032 33.4 6.8 23 123-145 228-250 (605)
165 PRK13210 putative L-xylulose 5 27.1 5E+02 0.011 25.4 10.0 53 86-142 18-70 (284)
166 TIGR00419 tim triosephosphate 26.9 1.5E+02 0.0032 28.6 5.8 43 91-144 75-117 (205)
167 PF13547 GTA_TIM: GTA TIM-barr 26.8 83 0.0018 31.9 4.1 40 399-438 207-265 (299)
168 PRK01060 endonuclease IV; Prov 26.4 2.5E+02 0.0054 27.6 7.7 50 86-140 14-63 (281)
169 cd02803 OYE_like_FMN_family Ol 26.3 3.9E+02 0.0084 27.1 9.2 39 109-147 62-100 (327)
170 TIGR02635 RhaI_grampos L-rhamn 26.1 2.4E+02 0.0051 29.9 7.6 87 78-182 35-130 (378)
171 PF00682 HMGL-like: HMGL-like 26.1 1.4E+02 0.0031 28.7 5.7 75 91-179 74-149 (237)
172 PRK00366 ispG 4-hydroxy-3-meth 26.0 2E+02 0.0043 30.2 6.8 53 124-176 117-169 (360)
173 cd07940 DRE_TIM_IPMS 2-isoprop 26.0 93 0.002 30.9 4.5 78 87-178 72-154 (268)
174 cd06599 GH31_glycosidase_Aec37 25.9 2.4E+02 0.0051 28.9 7.5 69 126-195 75-171 (317)
175 PF10566 Glyco_hydro_97: Glyco 25.6 1.5E+02 0.0033 29.9 5.8 61 86-157 108-168 (273)
176 PF04028 DUF374: Domain of unk 25.5 2.1E+02 0.0046 22.8 5.5 40 91-144 27-66 (74)
177 TIGR00542 hxl6Piso_put hexulos 25.1 1.2E+02 0.0027 29.9 5.2 60 82-143 92-152 (279)
178 PRK09249 coproporphyrinogen II 24.7 2.4E+02 0.0051 30.4 7.6 61 87-151 151-214 (453)
179 cd00019 AP2Ec AP endonuclease 24.6 2.9E+02 0.0063 27.2 7.8 54 84-142 10-64 (279)
180 cd06595 GH31_xylosidase_XylS-l 24.5 2.4E+02 0.0052 28.4 7.2 69 126-196 76-163 (292)
181 TIGR02630 xylose_isom_A xylose 24.4 9.2E+02 0.02 26.0 12.2 71 87-164 81-156 (434)
182 PRK05660 HemN family oxidoredu 24.3 3.1E+02 0.0068 28.7 8.2 93 87-195 107-202 (378)
183 PRK07094 biotin synthase; Prov 24.2 1.5E+02 0.0032 30.2 5.6 62 85-150 127-190 (323)
184 PRK09282 pyruvate carboxylase 24.1 2.7E+02 0.0059 31.3 8.0 48 86-146 98-145 (592)
185 PRK09389 (R)-citramalate synth 23.9 1.2E+02 0.0025 33.3 5.0 61 86-146 75-136 (488)
186 PRK12677 xylose isomerase; Pro 23.8 5.4E+02 0.012 27.2 9.9 71 86-163 33-104 (384)
187 PLN02925 4-hydroxy-3-methylbut 23.6 2.3E+02 0.005 32.4 7.2 52 126-178 212-263 (733)
188 PRK10426 alpha-glucosidase; Pr 23.5 6.1E+02 0.013 28.8 10.7 107 85-193 222-364 (635)
189 TIGR02159 PA_CoA_Oxy4 phenylac 23.5 99 0.0021 28.1 3.7 55 77-140 35-90 (146)
190 PF07071 DUF1341: Protein of u 23.0 1.6E+02 0.0034 28.5 5.0 44 85-139 136-179 (218)
191 PF06777 DUF1227: Protein of u 22.4 1.5E+02 0.0033 27.0 4.6 68 124-192 16-85 (146)
192 TIGR00542 hxl6Piso_put hexulos 22.4 6.6E+02 0.014 24.6 9.9 53 85-141 17-69 (279)
193 PF04055 Radical_SAM: Radical 22.3 1E+02 0.0022 26.8 3.6 52 87-140 90-143 (166)
194 PRK06256 biotin synthase; Vali 22.2 1.4E+02 0.0031 30.5 5.1 57 85-144 150-207 (336)
195 TIGR00587 nfo apurinic endonuc 22.0 1.6E+02 0.0036 29.2 5.3 58 86-148 13-70 (274)
196 PRK05474 xylose isomerase; Pro 22.0 3.7E+02 0.008 29.0 8.0 72 86-164 81-157 (437)
197 PF01055 Glyco_hydro_31: Glyco 21.7 3.1E+02 0.0068 29.1 7.7 109 85-196 44-184 (441)
198 PRK12465 xylose isomerase; Pro 21.4 7.3E+02 0.016 26.7 9.9 74 85-165 90-168 (445)
199 PRK09057 coproporphyrinogen II 21.4 4.9E+02 0.011 27.2 9.0 93 87-196 104-199 (380)
200 cd01335 Radical_SAM Radical SA 21.1 1.4E+02 0.0031 26.6 4.4 57 87-144 88-145 (204)
201 TIGR00423 radical SAM domain p 21.0 5.4E+02 0.012 26.0 9.0 58 86-150 106-170 (309)
202 TIGR02631 xylA_Arthro xylose i 20.5 7.8E+02 0.017 26.0 10.3 73 84-163 32-105 (382)
203 TIGR02102 pullulan_Gpos pullul 20.5 2.3E+02 0.005 34.4 6.9 64 82-145 478-576 (1111)
204 PRK03892 ribonuclease P protei 20.4 2.5E+02 0.0054 27.3 5.8 88 91-179 121-215 (216)
205 cd06570 GH20_chitobiase-like_1 20.4 3E+02 0.0066 28.2 7.0 64 85-154 19-95 (311)
206 cd06522 GH25_AtlA-like AtlA is 20.3 4.2E+02 0.009 24.8 7.5 50 88-151 16-67 (192)
207 PF03851 UvdE: UV-endonuclease 20.3 7.4E+02 0.016 25.0 9.5 86 87-183 48-141 (275)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.2e-140 Score=1089.92 Aligned_cols=470 Identities=54% Similarity=1.048 Sum_probs=434.0
Q ss_pred CCcCCCCCCCCeehhccccccccCCcCCCCCCCccceeeccC-CCcccCCCCCCCCCchhhchHHHHHHHHHcCCCeeee
Q 036937 25 GLSRKSFPEGFVFGTATSAYQVEGMADKDGRGPCIWDVYAHT-PGHIANNATADVTVDQYHRYKEDIDLMKNLNFDAYRF 103 (497)
Q Consensus 25 ~~~~~~fp~~FlwG~Atsa~QvEG~~~~~g~~~s~Wd~~~~~-~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~ 103 (497)
++.+..||++|+||+||||||+||+++++||++|+||.|+|. |+++.+++++|+|||+||||+|||+|||+||+++|||
T Consensus 31 ~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRF 110 (524)
T KOG0626|consen 31 KFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRF 110 (524)
T ss_pred cccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEE
Confidence 455788999999999999999999999999999999999987 6688888889999999999999999999999999999
Q ss_pred ccccccccccCC--CCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHhC
Q 036937 104 SISWSRIFPEGT--GTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTFG 181 (497)
Q Consensus 104 si~W~ri~P~~~--g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~ 181 (497)
||+||||+|.|+ +.+|++||+||+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++||
T Consensus 111 SIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 111 SISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred EeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 999999999997 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEeecCchhhhcccCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEe
Q 036937 182 DRVKNWYTFNEPRVIAALGFDDGSNPPSRCSKEVNNCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQETQKGNIGILL 261 (497)
Q Consensus 182 d~V~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~~~IGi~~ 261 (497)
|+||+|+|||||++++..||..|..|||+|+.++.+|..|+|.++.|+|+||||+|||+||++||+.++..|+|+|||++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 99999999999999999999999999999998767999999999999999999999999999999999888999999999
Q ss_pred cCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccCCCCCCHHHHhhhcCCcceEEeecCcceeeeC
Q 036937 262 DFVWYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDRLPKFTPEEVLMVQGSFDYLGVNQYTSYYMFD 341 (497)
Q Consensus 262 ~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~e~~~ikg~~DflGiNyY~~~~v~~ 341 (497)
+..|++|++++++|.+||+|+.+|.++||++|++.|+||++|++.+++|||.||++|.+++||+.||+||||||+.+|++
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 99999999988999999999999999999999889999999999999999999999999999999999999999999988
Q ss_pred CCCCCC-CCCCCCCCCCCcccccCCC-CcCCCCCCCCCcccChHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCC--CcC
Q 036937 342 PPWPKS-NISSYANDWDAGYAYDRNG-VPIGPRANSGWLYIVPWGLYNALMYVKERYGNPIVMLSENGMDDPSNY--TVN 417 (497)
Q Consensus 342 ~~~~~~-~~~~~~~d~~~~~~~~~~g-~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITENG~~~~~~~--~~~ 417 (497)
...+.. ..+....|.++.. ...+ .+.+......|+.++|+||+++|++++++|+||||||||||+++.+.. +..
T Consensus 351 ~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~ 428 (524)
T KOG0626|consen 351 LKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLE 428 (524)
T ss_pred cCCCCCCCCcccccccceee--eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchh
Confidence 654221 1223344444333 1222 345566667899999999999999999999999999999999987542 344
Q ss_pred cccCChhHHHHHHHHHHHHHHHHH-cCCCEEEEeecccccccccCCCCCCccceEEEcC-CCCCccccchHHHHHHHHhh
Q 036937 418 HLLHDTTRVNYYRDYISQLKKAVD-DGANVTGYFAWSLLDNFEWLLGYSSRFGITYVDF-DTLKRTPKMSAYWFKQLLQR 495 (497)
Q Consensus 418 g~i~D~~Ri~yl~~hl~~v~~Ai~-~Gv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~-~~~~R~pK~Sa~~y~~ii~~ 495 (497)
..++|..||+|++.||++|++||. +||||+|||+|||||||||..||+.||||++||| +.++|+||.|++||+++++.
T Consensus 429 ~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~fl~~ 508 (524)
T KOG0626|consen 429 VALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKFLKG 508 (524)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHHHcC
Confidence 567999999999999999999996 9999999999999999999999999999999999 45999999999999999985
Q ss_pred c
Q 036937 496 D 496 (497)
Q Consensus 496 ~ 496 (497)
+
T Consensus 509 ~ 509 (524)
T KOG0626|consen 509 K 509 (524)
T ss_pred C
Confidence 4
No 2
>PLN02849 beta-glucosidase
Probab=100.00 E-value=2.2e-132 Score=1063.27 Aligned_cols=458 Identities=43% Similarity=0.861 Sum_probs=410.1
Q ss_pred CCCCcCCCCCCCCeehhccccccccCCcCCCCCCCccceeeccCCCcccCCCCCCCCCchhhchHHHHHHHHHcCCCeee
Q 036937 23 TGGLSRKSFPEGFVFGTATSAYQVEGMADKDGRGPCIWDVYAHTPGHIANNATADVTVDQYHRYKEDIDLMKNLNFDAYR 102 (497)
Q Consensus 23 ~~~~~~~~fp~~FlwG~Atsa~QvEG~~~~~g~~~s~Wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R 102 (497)
+..+.+.+||++|+||+|||||||||+++++|||+|+||.|.+.+ ++.++++||||||||+|||+|||+||+++||
T Consensus 22 ~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~----~~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYR 97 (503)
T PLN02849 22 SSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSR----NMSNGDIACDGYHKYKEDVKLMVETGLDAFR 97 (503)
T ss_pred cCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccC----CCCCCCccccHHHhHHHHHHHHHHcCCCeEE
Confidence 455667789999999999999999999999999999999998754 3457889999999999999999999999999
Q ss_pred eccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHhCC
Q 036937 103 FSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTFGD 182 (497)
Q Consensus 103 ~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~d 182 (497)
|||+|+||+|+|.|.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+.|+++|||
T Consensus 98 fSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgD 177 (503)
T PLN02849 98 FSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFGN 177 (503)
T ss_pred EeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcC
Confidence 99999999999888999999999999999999999999999999999999999899999999999999999999999999
Q ss_pred cceEEEeecCchhhhcccCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEec
Q 036937 183 RVKNWYTFNEPRVIAALGFDDGSNPPSRCSKEVNNCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQETQKGNIGILLD 262 (497)
Q Consensus 183 ~V~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~~~IGi~~~ 262 (497)
+|++|+|||||++++..||..|.+|||.+......|..+++.++.++|+||+++|||+||++||++++..++++||++++
T Consensus 178 rVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~ 257 (503)
T PLN02849 178 HVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLF 257 (503)
T ss_pred cCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 99999999999999999999999999974311113554455567899999999999999999999764457899999999
Q ss_pred CcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccCCCCCCHHHHhhhcCCcceEEeecCcceeeeCC
Q 036937 263 FVWYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDRLPKFTPEEVLMVQGSFDYLGVNQYTSYYMFDP 342 (497)
Q Consensus 263 ~~~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~e~~~ikg~~DflGiNyY~~~~v~~~ 342 (497)
..+++|.+++++|++||++++++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+..
T Consensus 258 ~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~ 337 (503)
T PLN02849 258 ALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTNI 337 (503)
T ss_pred CceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhcccC
Confidence 99999999999999999999999999999999999999999999998999999999999999999999999999999753
Q ss_pred CCCCC--CCCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCCCcCccc
Q 036937 343 PWPKS--NISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYGNPIVMLSENGMDDPSNYTVNHLL 420 (497)
Q Consensus 343 ~~~~~--~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITENG~~~~~~~~~~g~i 420 (497)
..... ..+.... ..+.+....++++| +|+|+||+++|+++++||++|||||||||++..++ .++++
T Consensus 338 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~--~~~~v 405 (503)
T PLN02849 338 KIKPSLSGNPDFYS---------DMGVSLGKFSAFEY-AVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQD--LQLQQ 405 (503)
T ss_pred CCCCCCCCCCcccc---------ccCCCCCccCCCCC-eEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCC--CCCcc
Confidence 21100 0000000 00112223556788 99999999999999999998899999999998764 45689
Q ss_pred CChhHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccccCCCCCCccceEEEcCCC--CCccccchHHHHHHHHhhc
Q 036937 421 HDTTRVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNFEWLLGYSSRFGITYVDFDT--LKRTPKMSAYWFKQLLQRD 496 (497)
Q Consensus 421 ~D~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~--~~R~pK~Sa~~y~~ii~~~ 496 (497)
+|++||+||++||++|++||++||||+|||+|||||||||.+||++|||||+||++| ++|+||+|++||+++|+++
T Consensus 406 ~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~~~ 483 (503)
T PLN02849 406 KDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYEFSFGLYSVNFSDPHRKRSPKLSAHWYSAFLKGN 483 (503)
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999975 5999999999999999876
No 3
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.3e-131 Score=1055.92 Aligned_cols=457 Identities=49% Similarity=0.925 Sum_probs=405.7
Q ss_pred CcCCCCCCCCeehhccccccccCCcCCCCCCCccceeeccCCCcccCCCCCCCCCchhhchHHHHHHHHHcCCCeeeecc
Q 036937 26 LSRKSFPEGFVFGTATSAYQVEGMADKDGRGPCIWDVYAHTPGHIANNATADVTVDQYHRYKEDIDLMKNLNFDAYRFSI 105 (497)
Q Consensus 26 ~~~~~fp~~FlwG~Atsa~QvEG~~~~~g~~~s~Wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si 105 (497)
+.+.+||++|+||+|||||||||+++++|||+|+||.|.+ ++. .+..++++||||||||+|||+|||+||+++|||||
T Consensus 26 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSI 103 (497)
T PLN02998 26 YSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSI 103 (497)
T ss_pred CccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeec
Confidence 4567899999999999999999999999999999999988 552 22247889999999999999999999999999999
Q ss_pred ccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHhCCcce
Q 036937 106 SWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTFGDRVK 185 (497)
Q Consensus 106 ~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~ 185 (497)
+||||+|+|+|.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+.|+++|||+|+
T Consensus 104 sWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 104 SWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred cHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 99999999878999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred EEEeecCchhhhcccCCCCCCCCCCCCcccC-CCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCc
Q 036937 186 NWYTFNEPRVIAALGFDDGSNPPSRCSKEVN-NCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQETQKGNIGILLDFV 264 (497)
Q Consensus 186 ~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~-~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~ 264 (497)
+|+|||||++++..||..|.+|||.+..... .|..+++.++.++|+||+++|||+||++||+.++..++++|||+++..
T Consensus 184 ~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~ 263 (497)
T PLN02998 184 HWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTY 263 (497)
T ss_pred EEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCC
Confidence 9999999999999999999999996432110 266656667789999999999999999999986556789999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccCCCCCCHHHHhhhcCCcceEEeecCcceeeeCCCC
Q 036937 265 WYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDRLPKFTPEEVLMVQGSFDYLGVNQYTSYYMFDPPW 344 (497)
Q Consensus 265 ~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~e~~~ikg~~DflGiNyY~~~~v~~~~~ 344 (497)
+++|++++++|++||+++++|.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+....
T Consensus 264 ~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~ 343 (497)
T PLN02998 264 GAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNSS 343 (497)
T ss_pred eeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCCC
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999975322
Q ss_pred CCCC-CCCCCCCCCCcccccCCCCcCCCCCC-CCCcccChHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCCCcCcccCC
Q 036937 345 PKSN-ISSYANDWDAGYAYDRNGVPIGPRAN-SGWLYIVPWGLYNALMYVKERYGNPIVMLSENGMDDPSNYTVNHLLHD 422 (497)
Q Consensus 345 ~~~~-~~~~~~d~~~~~~~~~~g~~~~~~~~-~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITENG~~~~~~~~~~g~i~D 422 (497)
+... ...+..+..... ...+..+. ++| +|+|+||+++|+++++||++|||||||||+++.+ +++++|
T Consensus 344 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~----~g~v~D 412 (497)
T PLN02998 344 SLKPNLQDFNTDIAVEM------TLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQMTPH----SSSLVD 412 (497)
T ss_pred cCCCCcccccccccccc------ccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCC----CCcccC
Confidence 1000 001111111000 01122332 556 9999999999999999999888999999999763 478999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccccCCCCCCccceEEEcCC--CCCccccchHHHHHHHHhh
Q 036937 423 TTRVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNFEWLLGYSSRFGITYVDFD--TLKRTPKMSAYWFKQLLQR 495 (497)
Q Consensus 423 ~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~--~~~R~pK~Sa~~y~~ii~~ 495 (497)
++||+||++||.+|++||+|||||+|||+|||||||||.+||++|||||+||++ +++|+||+|++||++||++
T Consensus 413 ~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~ 487 (497)
T PLN02998 413 TTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFELFGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKG 487 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceecccHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999996 4699999999999999985
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=2.5e-131 Score=1055.35 Aligned_cols=455 Identities=42% Similarity=0.827 Sum_probs=405.7
Q ss_pred CcCCCCCCCCeehhccccccccCCcCCCCCCCccceeeccCCCcccCCCCCCCCCchhhchHHHHHHHHHcCCCeeeecc
Q 036937 26 LSRKSFPEGFVFGTATSAYQVEGMADKDGRGPCIWDVYAHTPGHIANNATADVTVDQYHRYKEDIDLMKNLNFDAYRFSI 105 (497)
Q Consensus 26 ~~~~~fp~~FlwG~Atsa~QvEG~~~~~g~~~s~Wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si 105 (497)
+.+.+||++|+||+|||||||||+++++|||+|+||.|.+. .++.++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 55678999999999999999999999999999999999873 23468899999999999999999999999999999
Q ss_pred ccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHhCCcce
Q 036937 106 SWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTFGDRVK 185 (497)
Q Consensus 106 ~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~ 185 (497)
+||||+|+|+|.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|+++++.|++||+.|+++|||+|+
T Consensus 99 sWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 99 SWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred cHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 99999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCchhhhcccCCCCCCCCCCCCccc-CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCc
Q 036937 186 NWYTFNEPRVIAALGFDDGSNPPSRCSKEV-NNCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQETQKGNIGILLDFV 264 (497)
Q Consensus 186 ~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~-~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~ 264 (497)
+|+|||||++++..||..|.. ||.++... ..|.++++.++.++|+||+++|||+||++||++++..|+++||++++..
T Consensus 179 ~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~~ 257 (504)
T PLN02814 179 LWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFAF 257 (504)
T ss_pred EEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeCc
Confidence 999999999999999999985 88654210 1354445556789999999999999999999987666899999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccCCCCCCHHHHhhhcCCcceEEeecCcceeeeCCCC
Q 036937 265 WYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDRLPKFTPEEVLMVQGSFDYLGVNQYTSYYMFDPPW 344 (497)
Q Consensus 265 ~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~e~~~ikg~~DflGiNyY~~~~v~~~~~ 344 (497)
+++|++++++|++||+++++|.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+..+.
T Consensus 258 ~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~~ 337 (504)
T PLN02814 258 GLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRPA 337 (504)
T ss_pred eeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999975321
Q ss_pred CCCC---CCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCCCcCcccC
Q 036937 345 PKSN---ISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYGNPIVMLSENGMDDPSNYTVNHLLH 421 (497)
Q Consensus 345 ~~~~---~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITENG~~~~~~~~~~g~i~ 421 (497)
.... ...+..+.+.. ..+.++.+++|| +|+|+||+++|+++++||++|||||||||++..+ ++.++
T Consensus 338 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~----~g~i~ 406 (504)
T PLN02814 338 PSIFPSMNEGFFTDMGAY------IISAGNSSFFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMPMKH----DSTLQ 406 (504)
T ss_pred CCcccccCCCcccccccc------cCCCCCcCCCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCC----CCccc
Confidence 1000 00110010000 012235677888 9999999999999999999889999999999764 57899
Q ss_pred ChhHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccccCCCCCCccceEEEcCCC--CCccccchHHHHHHHHhhc
Q 036937 422 DTTRVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNFEWLLGYSSRFGITYVDFDT--LKRTPKMSAYWFKQLLQRD 496 (497)
Q Consensus 422 D~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~--~~R~pK~Sa~~y~~ii~~~ 496 (497)
|++||+||++||++|++||++||||+|||+|||||||||.+||++||||||||++| ++|+||+|++||+++|++.
T Consensus 407 D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i~~~ 483 (504)
T PLN02814 407 DTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFLNGT 483 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999974 5999999999999999753
No 5
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=6.2e-129 Score=1034.16 Aligned_cols=448 Identities=35% Similarity=0.652 Sum_probs=394.9
Q ss_pred CCCCCCCeehhccccccccCCcCCCCCCCccceeeccCCCcccCCCCCCCCCchhhchHHHHHHHHHcCCCeeeeccccc
Q 036937 29 KSFPEGFVFGTATSAYQVEGMADKDGRGPCIWDVYAHTPGHIANNATADVTVDQYHRYKEDIDLMKNLNFDAYRFSISWS 108 (497)
Q Consensus 29 ~~fp~~FlwG~Atsa~QvEG~~~~~g~~~s~Wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ 108 (497)
.+||++|+||+|||||||||++++||||+|+||.|++.++++ ++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 359999999999999999999999999999999999866654 6889999999999999999999999999999999
Q ss_pred cccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHhCCcceEEE
Q 036937 109 RIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTFGDRVKNWY 188 (497)
Q Consensus 109 ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~w~ 188 (497)
||+|+++|.+|++||+||+++|++|+++||+|||||+|||+|+||+++ |||+|+++++.|++||+.||++||| |++|+
T Consensus 79 RI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W~ 156 (469)
T PRK13511 79 RIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYWT 156 (469)
T ss_pred hcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 999998789999999999999999999999999999999999999987 9999999999999999999999999 99999
Q ss_pred eecCchhhhcccCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCccccc
Q 036937 189 TFNEPRVIAALGFDDGSNPPSRCSKEVNNCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQETQKGNIGILLDFVWYEP 268 (497)
Q Consensus 189 t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~P 268 (497)
|||||++++..||..|.+|||.+.. .+..++++||+++|||+||++||+.. |+++||++++..+++|
T Consensus 157 T~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P 223 (469)
T PRK13511 157 TFNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYP 223 (469)
T ss_pred EccchhhhhhcchhhcccCCCCCcc----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEee
Confidence 9999999999999999999996531 24689999999999999999999964 7899999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhcc------CCCCCCHHHHhhhcC---CcceEEeecCccee
Q 036937 269 HT-RSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGD------RLPKFTPEEVLMVQG---SFDYLGVNQYTSYY 338 (497)
Q Consensus 269 ~~-~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~------~lp~ft~~e~~~ikg---~~DflGiNyY~~~~ 338 (497)
.+ ++++|++||+++++|.++||+||++.|+||+.|++.++. ..|.||++|++.|++ ++||||||||++.+
T Consensus 224 ~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~ 303 (469)
T PRK13511 224 IDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDW 303 (469)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcce
Confidence 98 899999999999999999999999999999999987741 124799999999964 68999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCc---c--cccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhCC-CcEEEeecCCCCCC
Q 036937 339 MFDPPWPKSNISSYANDWDAG---Y--AYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYGN-PIVMLSENGMDDPS 412 (497)
Q Consensus 339 v~~~~~~~~~~~~~~~d~~~~---~--~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~-~pI~ITENG~~~~~ 412 (497)
|+..............+.... . .......+..+.++++| +|+|+||+++|++++++|++ |||||||||++..+
T Consensus 304 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d 382 (469)
T PRK13511 304 MRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKD 382 (469)
T ss_pred eecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCC
Confidence 975321100000000000000 0 00000011224567888 89999999999999999997 68999999999877
Q ss_pred CCCcCcccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccccCCCCCCccceEEEcCCCCCccccchHHHHHHH
Q 036937 413 NYTVNHLLHDTTRVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNFEWLLGYSSRFGITYVDFDTLKRTPKMSAYWFKQL 492 (497)
Q Consensus 413 ~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~R~pK~Sa~~y~~i 492 (497)
+.+.++.++|++||+||++||++|++||++||||+|||+|||||||||.+||++|||||+||++|++|+||+|++||+++
T Consensus 383 ~~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~~~~R~pK~S~~wy~~~ 462 (469)
T PRK13511 383 EFVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFETQERYPKKSAYWYKKL 462 (469)
T ss_pred CcCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCCcCccccccHHHHHHHH
Confidence 66566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc
Q 036937 493 LQRD 496 (497)
Q Consensus 493 i~~~ 496 (497)
|+++
T Consensus 463 i~~~ 466 (469)
T PRK13511 463 AETK 466 (469)
T ss_pred HHhC
Confidence 9876
No 6
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=1.3e-128 Score=1029.55 Aligned_cols=442 Identities=36% Similarity=0.644 Sum_probs=393.3
Q ss_pred CCCCCCeehhccccccccCCcCCCCCCCccceeeccCCCcccCCCCCCCCCchhhchHHHHHHHHHcCCCeeeecccccc
Q 036937 30 SFPEGFVFGTATSAYQVEGMADKDGRGPCIWDVYAHTPGHIANNATADVTVDQYHRYKEDIDLMKNLNFDAYRFSISWSR 109 (497)
Q Consensus 30 ~fp~~FlwG~Atsa~QvEG~~~~~g~~~s~Wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~r 109 (497)
+||++|+||+|||||||||+++++|||+|+||.+.+.++++ ++++||||||||+|||+|||+||+++|||||+|||
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYWY----TAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCCC----CCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 59999999999999999999999999999999998755543 67899999999999999999999999999999999
Q ss_pred ccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHhCCcceEEEe
Q 036937 110 IFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTFGDRVKNWYT 189 (497)
Q Consensus 110 i~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~w~t 189 (497)
|+|++.|.+|++||+||++||++|+++||+|||||+|||+|+||+++ |||+|+++++.|++||+.||++||+ |++|+|
T Consensus 79 I~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~WiT 156 (467)
T TIGR01233 79 IFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWTT 156 (467)
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 99998789999999999999999999999999999999999999987 9999999999999999999999998 999999
Q ss_pred ecCchhhhcccCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCcccccC
Q 036937 190 FNEPRVIAALGFDDGSNPPSRCSKEVNNCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQETQKGNIGILLDFVWYEPH 269 (497)
Q Consensus 190 ~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~ 269 (497)
||||++++..||+.|.+|||.+.. .++.++|+||+++|||+||++||++. ++++|||+++..+++|+
T Consensus 157 ~NEP~~~~~~gy~~G~~~Pg~~~~----------~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~ 223 (467)
T TIGR01233 157 FNEIGPIGDGQYLVGKFPPGIKYD----------LAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPY 223 (467)
T ss_pred ecchhhhhhccchhcccCCCccch----------hHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEEC
Confidence 999999999999999999996421 24689999999999999999999963 78999999999999999
Q ss_pred C-CCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccC------CCCCCHHHHhhh---cCCcceEEeecCcceee
Q 036937 270 T-RSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDR------LPKFTPEEVLMV---QGSFDYLGVNQYTSYYM 339 (497)
Q Consensus 270 ~-~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~------lp~ft~~e~~~i---kg~~DflGiNyY~~~~v 339 (497)
+ ++++|++||++++++.++||+||++.|+||+.|++.++.+ +|.||++|+++| ++++||||||||++.+|
T Consensus 224 ~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v 303 (467)
T TIGR01233 224 DPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWM 303 (467)
T ss_pred CCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceee
Confidence 7 8999999999999999999999999999999999987532 378999999999 58999999999999999
Q ss_pred eCCCCCCCC---CC---C--CCCCCCCcccccCCCCcCC-CCCCCCCcccChHHHHHHHHHHHHHhCC-CcEEEeecCCC
Q 036937 340 FDPPWPKSN---IS---S--YANDWDAGYAYDRNGVPIG-PRANSGWLYIVPWGLYNALMYVKERYGN-PIVMLSENGMD 409 (497)
Q Consensus 340 ~~~~~~~~~---~~---~--~~~d~~~~~~~~~~g~~~~-~~~~~~w~~i~P~gl~~~l~~~~~rY~~-~pI~ITENG~~ 409 (497)
+........ .. . .....+.. ....+.+ +.++++| +|+|+||+++|+++++||++ |||||||||++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~ 378 (467)
T TIGR01233 304 QAFDGETEIIHNGKGEKGSSKYQIKGVG----RRVAPDYVPRTDWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITENGLG 378 (467)
T ss_pred ccCCCccccccCCccccCcccccCCCcc----cccCCCCCCcCCCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCCCC
Confidence 753111000 00 0 00000000 0001111 3567888 89999999999999999987 68999999999
Q ss_pred CCCCCCcCcccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccccCCCCCCccceEEEcCCCCCccccchHHHH
Q 036937 410 DPSNYTVNHLLHDTTRVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNFEWLLGYSSRFGITYVDFDTLKRTPKMSAYWF 489 (497)
Q Consensus 410 ~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~R~pK~Sa~~y 489 (497)
..++.+ +|.++|++||+||++||.+|++||++||||+|||+|||||||||.+||++|||||+||++|++|+||+|++||
T Consensus 379 ~~d~~~-~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~t~~R~~K~S~~wy 457 (467)
T TIGR01233 379 YKDEFV-DNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAHWY 457 (467)
T ss_pred CCCCCC-CCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCccccccHHHHH
Confidence 877653 6889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 036937 490 KQLLQRD 496 (497)
Q Consensus 490 ~~ii~~~ 496 (497)
+++|+++
T Consensus 458 ~~ii~~~ 464 (467)
T TIGR01233 458 KKLAETQ 464 (467)
T ss_pred HHHHHhc
Confidence 9999976
No 7
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-128 Score=997.83 Aligned_cols=444 Identities=40% Similarity=0.793 Sum_probs=403.0
Q ss_pred CCCCCCCeehhccccccccCCcCCCCCCCccceeecc--CCCcccCCCCCCCCCchhhchHHHHHHHHHcCCCeeeeccc
Q 036937 29 KSFPEGFVFGTATSAYQVEGMADKDGRGPCIWDVYAH--TPGHIANNATADVTVDQYHRYKEDIDLMKNLNFDAYRFSIS 106 (497)
Q Consensus 29 ~~fp~~FlwG~Atsa~QvEG~~~~~g~~~s~Wd~~~~--~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~ 106 (497)
.+||++|+||+||||+|+||++++||||+|+||.|.+ .|+++..+..++.||||||||+|||+|||+||+|+|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4799999999999999999999999999999999999 47888888999999999999999999999999999999999
Q ss_pred cccccccCCC-CCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHhCCcce
Q 036937 107 WSRIFPEGTG-TVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTFGDRVK 185 (497)
Q Consensus 107 W~ri~P~~~g-~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~ 185 (497)
||||+|++++ ++|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.||++|||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 9999999864 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCchhhhcccCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCcc
Q 036937 186 NWYTFNEPRVIAALGFDDGSNPPSRCSKEVNNCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQETQKGNIGILLDFVW 265 (497)
Q Consensus 186 ~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~ 265 (497)
+|+|||||++++..||+.|.+||+..+ .+..+||+||+++|||+|++++|+.. ++.+||++++..+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~~-----------~~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~p 227 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIVD-----------PKAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLTP 227 (460)
T ss_pred EEEEecchhhhhcccccccccCCCccC-----------HHHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccCc
Confidence 999999999999999999999999775 36789999999999999999999975 3449999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccC--CCCCCHHHHhhhcC-CcceEEeecCcc-eeeeC
Q 036937 266 YEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDR--LPKFTPEEVLMVQG-SFDYLGVNQYTS-YYMFD 341 (497)
Q Consensus 266 ~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~--lp~ft~~e~~~ikg-~~DflGiNyY~~-~~v~~ 341 (497)
.+|.+++|+|+.||+.++.+.+.+|+||+++|.||..+...+.+. +|.++++|+++|+. ++||||+|||++ .+++.
T Consensus 228 ~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~ 307 (460)
T COG2723 228 AYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAA 307 (460)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeec
Confidence 999999999999999999999999999999999999999999764 79999999999985 699999999995 44443
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCCCcCcccC
Q 036937 342 PPWPKSNISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYGNPIVMLSENGMDDPSNYTVNHLLH 421 (497)
Q Consensus 342 ~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITENG~~~~~~~~~~g~i~ 421 (497)
..... ..+..+.... ... .|..+.+++|| +|||+||+.+|+++++||+ +||||||||++..++.+.++ |+
T Consensus 308 ~~~~~---~~~~~~~~~~-~~~---~p~~~~sdwGW-eI~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~~~~~~-i~ 377 (460)
T COG2723 308 EPRYV---SGYGPGGFFT-SVP---NPGLEVSDWGW-EIYPKGLYDILEKLYERYG-IPLFITENGLGVKDEVDFDG-IN 377 (460)
T ss_pred cCCcC---Cccccccccc-ccC---CCCCcccCCCc-eeChHHHHHHHHHHHHHhC-CCeEEecCCCCcccccccCC-cC
Confidence 33210 0111010000 111 23335678999 9999999999999999999 78999999999988876555 99
Q ss_pred ChhHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccccCCCCCCccceEEEcCCC-CCccccchHHHHHHHHhhc
Q 036937 422 DTTRVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNFEWLLGYSSRFGITYVDFDT-LKRTPKMSAYWFKQLLQRD 496 (497)
Q Consensus 422 D~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~-~~R~pK~Sa~~y~~ii~~~ 496 (497)
|++||+||++||.+|++||++||+|+||++|||+||+||++||++||||++||++| ++|+||+|++|||++|++|
T Consensus 378 DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~~~~~R~~KkS~~WyK~vi~sn 453 (460)
T COG2723 378 DDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYDTDLERTPKKSFYWYKEVIESN 453 (460)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEcccccceeeecCceeeeHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999988 7999999999999999876
No 8
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=3.6e-129 Score=1036.04 Aligned_cols=446 Identities=53% Similarity=0.996 Sum_probs=390.9
Q ss_pred CCCCCCCeehhccccccccCCcCCCCCCCccceeeccCCCcccCCCCCCCCCchhhchHHHHHHHHHcCCCeeeeccccc
Q 036937 29 KSFPEGFVFGTATSAYQVEGMADKDGRGPCIWDVYAHTPGHIANNATADVTVDQYHRYKEDIDLMKNLNFDAYRFSISWS 108 (497)
Q Consensus 29 ~~fp~~FlwG~Atsa~QvEG~~~~~g~~~s~Wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ 108 (497)
.+||++|+||+|||||||||++++||||+|+||.|++.|+++.++.++++||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 47999999999999999999999999999999999999899888889999999999999999999999999999999999
Q ss_pred cccccC-CCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHhCCcceEE
Q 036937 109 RIFPEG-TGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTFGDRVKNW 187 (497)
Q Consensus 109 ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~w 187 (497)
||+|+| .|.+|+++|++|+++|++|+++||+|||||+|||+|+||++ +|||+|+++++.|++||++|+++|||+|++|
T Consensus 83 Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~w 161 (455)
T PF00232_consen 83 RIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKYW 161 (455)
T ss_dssp HHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSEE
T ss_pred heeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcceE
Confidence 999997 69999999999999999999999999999999999999998 6999999999999999999999999999999
Q ss_pred EeecCchhhhcccCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCcccc
Q 036937 188 YTFNEPRVIAALGFDDGSNPPSRCSKEVNNCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQETQKGNIGILLDFVWYE 267 (497)
Q Consensus 188 ~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~ 267 (497)
+|||||++++..||+.|.+|||..+ .++.++|+||+++||++||++||+++ ++++||++++..+++
T Consensus 162 ~T~NEp~~~~~~~y~~g~~~p~~~~-----------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~ 227 (455)
T PF00232_consen 162 ITFNEPNVFALLGYLYGGFPPGRDS-----------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFY 227 (455)
T ss_dssp EEEETHHHHHHHHHTSSSSTTCSST-----------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEE
T ss_pred Eeccccceeeccccccccccccccc-----------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccC
Confidence 9999999999999999999999654 46789999999999999999999986 799999999999999
Q ss_pred cCCCCHHHH-HHHHHHHHHhccccccccccCCCChhhHHhhccC--CCCCCHHHHhhhcCCcceEEeecCcceeeeCCCC
Q 036937 268 PHTRSKADN-LAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDR--LPKFTPEEVLMVQGSFDYLGVNQYTSYYMFDPPW 344 (497)
Q Consensus 268 P~~~~~~d~-~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~--lp~ft~~e~~~ikg~~DflGiNyY~~~~v~~~~~ 344 (497)
|.+++++|. +||++.++|.++||+||+++|+||..|+++++++ +|.||++|++.|++++||+|||||++..|+..+.
T Consensus 228 P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~ 307 (455)
T PF00232_consen 228 PLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPN 307 (455)
T ss_dssp ESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSS
T ss_pred CCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcc
Confidence 999887776 8999999999999999999999999999999987 9999999999999999999999999999997653
Q ss_pred CCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCCCcCcccCChh
Q 036937 345 PKSNISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYGNPIVMLSENGMDDPSNYTVNHLLHDTT 424 (497)
Q Consensus 345 ~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITENG~~~~~~~~~~g~i~D~~ 424 (497)
..... ............ .+.++.++++| +++|+||+++|++++++|++|||||||||++..++.+. ++++|+.
T Consensus 308 ~~~~~-~~~~~~~~~~~~----~~~~~~t~~gw-~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~-~~v~D~~ 380 (455)
T PF00232_consen 308 PSSPP-SYDSDAPFGQPY----NPGGPTTDWGW-EIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDD-GKVDDDY 380 (455)
T ss_dssp STSST-THEEEESEEEEC----ETSSEBCTTST-BBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTT-SHBSHHH
T ss_pred ccccc-cccCCccccccc----cccccccccCc-ccccchHhhhhhhhccccCCCcEEEecccccccccccc-cCcCcHH
Confidence 22111 110000000000 13345688999 89999999999999999999999999999999887555 8999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeecccccccccCCCCCCccceEEEc-CCCCCccccchHHHHHHHHhhc
Q 036937 425 RVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNFEWLLGYSSRFGITYVD-FDTLKRTPKMSAYWFKQLLQRD 496 (497)
Q Consensus 425 Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD-~~~~~R~pK~Sa~~y~~ii~~~ 496 (497)
||+||++||.+|++||+|||||+|||+|||||||||.+||++||||++|| ++|++|+||+|++||+++|+++
T Consensus 381 Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~~n 453 (455)
T PF00232_consen 381 RIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIRSN 453 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999 5899999999999999999986
No 9
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=2.4e-127 Score=1021.73 Aligned_cols=444 Identities=30% Similarity=0.497 Sum_probs=392.5
Q ss_pred CCCCCCCCeehhccccccccCCcCCCCCCCccceeeccCCCccc--C----------C--CCCCCCCchhhchHHHHHHH
Q 036937 28 RKSFPEGFVFGTATSAYQVEGMADKDGRGPCIWDVYAHTPGHIA--N----------N--ATADVTVDQYHRYKEDIDLM 93 (497)
Q Consensus 28 ~~~fp~~FlwG~Atsa~QvEG~~~~~g~~~s~Wd~~~~~~~~~~--~----------~--~~~~~a~d~y~ry~eDi~l~ 93 (497)
..+||++|+||+|||||||||++++||||+|+||.|.+.++++. . + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 45799999999999999999999999999999999988665541 1 1 15789999999999999999
Q ss_pred HHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHH
Q 036937 94 KNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADY 172 (497)
Q Consensus 94 ~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~y 172 (497)
|+||+++|||||+||||+|+|. |.+|++||+||++||++|+++||+|||||+|||+|+||+++||||+|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 9999999999999999999974 679999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHhCCcceEEEeecCchhhhcccCC-CCC-CCCCCCCcccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhc
Q 036937 173 ADFCFKTFGDRVKNWYTFNEPRVIAALGFD-DGS-NPPSRCSKEVNNCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQ 250 (497)
Q Consensus 173 a~~~~~~~~d~V~~w~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~ 250 (497)
|+.|+++|||+|++|+|||||++++..||. .|. +|||... .++.++|+||+|+|||+||++||+..
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~-----------~~~~~~a~h~~llAHa~A~~~~~~~~- 230 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGENK-----------EQVKYQAAHHELVASAIATKIAHEVD- 230 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCch-----------hhhHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 999999999999999999999999988886 454 4776422 24689999999999999999999853
Q ss_pred CCCCceEEEEecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhcc--CCCCCCHHHHhhhc-CCcc
Q 036937 251 ETQKGNIGILLDFVWYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGD--RLPKFTPEEVLMVQ-GSFD 327 (497)
Q Consensus 251 ~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~--~lp~ft~~e~~~ik-g~~D 327 (497)
|+++|||+++..+++|.+++++|++||++++ +.+.||+||++.|+||+.|++.+++ .+|.||++|+++|+ +++|
T Consensus 231 --~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~D 307 (478)
T PRK09593 231 --PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVD 307 (478)
T ss_pred --CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCC
Confidence 7899999999999999999999999999887 5578999999999999999999975 46889999999996 9999
Q ss_pred eEEeecCcceeeeCCCCCCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhCCCcEEEeecC
Q 036937 328 YLGVNQYTSYYMFDPPWPKSNISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYGNPIVMLSENG 407 (497)
Q Consensus 328 flGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITENG 407 (497)
|||||||++.+|+..+... +.. ...... ... .|..+.+++|| +|+|+||+++|+++++||++ ||||||||
T Consensus 308 FlGiNyYt~~~v~~~~~~~---~~~--~~~~~~-~~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItENG 377 (478)
T PRK09593 308 FISFSYYSSRVASGDPKVN---EKT--AGNIFA-SLK--NPYLKASEWGW-QIDPLGLRITLNTIWDRYQK-PMFIVENG 377 (478)
T ss_pred EEEEecccCcccccCCCCC---CCC--CCCccc-ccc--CCCcccCCCCC-EECHHHHHHHHHHHHHHcCC-CEEEEcCC
Confidence 9999999999997532110 000 000000 001 13335677889 99999999999999999986 69999999
Q ss_pred CCCCCCCCcCcccCChhHHHHHHHHHHHHHHHHH-cCCCEEEEeecccccccccCCC-CCCccceEEEcCC-----CCCc
Q 036937 408 MDDPSNYTVNHLLHDTTRVNYYRDYISQLKKAVD-DGANVTGYFAWSLLDNFEWLLG-YSSRFGITYVDFD-----TLKR 480 (497)
Q Consensus 408 ~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~-~Gv~V~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~-----~~~R 480 (497)
++..++.+.+|.++|++||+||++||.+|++||+ +||||+|||+|||||||||.+| |++|||||+||++ |++|
T Consensus 378 ~~~~d~~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~~~~~R 457 (478)
T PRK09593 378 LGAVDKPDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGKGTLKR 457 (478)
T ss_pred CCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCCcccce
Confidence 9988776678899999999999999999999995 9999999999999999999999 9999999999996 5799
Q ss_pred cccchHHHHHHHHhhc
Q 036937 481 TPKMSAYWFKQLLQRD 496 (497)
Q Consensus 481 ~pK~Sa~~y~~ii~~~ 496 (497)
+||+|++||+++|+++
T Consensus 458 ~pK~S~~wy~~ii~~~ 473 (478)
T PRK09593 458 SKKKSFDWYKKVIASN 473 (478)
T ss_pred ecccHHHHHHHHHHhC
Confidence 9999999999999865
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.3e-126 Score=1015.70 Aligned_cols=442 Identities=31% Similarity=0.556 Sum_probs=387.3
Q ss_pred CCCCCCeehhccccccccCCcCCCCCCCccceeec---c-CCCccc----CCC--CCCCCCchhhchHHHHHHHHHcCCC
Q 036937 30 SFPEGFVFGTATSAYQVEGMADKDGRGPCIWDVYA---H-TPGHIA----NNA--TADVTVDQYHRYKEDIDLMKNLNFD 99 (497)
Q Consensus 30 ~fp~~FlwG~Atsa~QvEG~~~~~g~~~s~Wd~~~---~-~~~~~~----~~~--~~~~a~d~y~ry~eDi~l~~~lG~~ 99 (497)
+||++|+||+|||||||||+++++|||+|+||.|. + .|+++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 4 255543 222 5789999999999999999999999
Q ss_pred eeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHH
Q 036937 100 AYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFK 178 (497)
Q Consensus 100 ~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~ 178 (497)
+|||||+||||+|+|. |.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|+++++.|++||+.||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 9999999999999975 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcceEEEeecCchhhhcc-----cCC-CCC-CCCCCCCcccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcC
Q 036937 179 TFGDRVKNWYTFNEPRVIAAL-----GFD-DGS-NPPSRCSKEVNNCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQE 251 (497)
Q Consensus 179 ~~~d~V~~w~t~NEp~~~~~~-----gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~ 251 (497)
+|||+|++|+|||||++++.. ||. .|. +|||... .+..++|+||+++|||+|++++|+..
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~-----------~~~~~~~~h~~llAha~A~~~~~~~~-- 229 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDR-----------EQIMYQAAHYELVASALAVKTGHEIN-- 229 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCch-----------hHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 999999999999999998766 444 343 3665321 24579999999999999999999964
Q ss_pred CCCceEEEEecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccC--CCCCCHHHHhhh-cCCcce
Q 036937 252 TQKGNIGILLDFVWYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDR--LPKFTPEEVLMV-QGSFDY 328 (497)
Q Consensus 252 ~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~--lp~ft~~e~~~i-kg~~Df 328 (497)
++++||++++..+++|.+++++|++||++++.+ +.||+||+++|+||+.|++.++++ .|.||++|++.| ++++||
T Consensus 230 -~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DF 307 (476)
T PRK09589 230 -PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDY 307 (476)
T ss_pred -CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCE
Confidence 688999999999999999999999999998854 679999999999999999999763 478999999998 699999
Q ss_pred EEeecCcceeeeCCCCCCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhCCCcEEEeecCC
Q 036937 329 LGVNQYTSYYMFDPPWPKSNISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYGNPIVMLSENGM 408 (497)
Q Consensus 329 lGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITENG~ 408 (497)
||||||++.+|+...... ......+. .. .. .|..+.++++| +|+|+||+++|+++++||++ ||||||||+
T Consensus 308 lGiNyYts~~v~~~~~~~--~~~~~~~~--~~--~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~~Y~~-Pi~ItENG~ 377 (476)
T PRK09589 308 IGFSYYMSFATKFHEDNP--QLDYVETR--DL--VS--NPYVKASEWGW-QIDPAGLRYSLNWFWDHYQL-PLFIVENGF 377 (476)
T ss_pred EEEecccCcccccCCCCC--CCCccccc--cc--cc--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcCC-CEEEEeCCc
Confidence 999999999987522110 00000000 00 01 13334667888 99999999999999999986 699999999
Q ss_pred CCCCCCCcCcccCChhHHHHHHHHHHHHHHHH-HcCCCEEEEeecccccccccCCC-CCCccceEEEcCC-----CCCcc
Q 036937 409 DDPSNYTVNHLLHDTTRVNYYRDYISQLKKAV-DDGANVTGYFAWSLLDNFEWLLG-YSSRFGITYVDFD-----TLKRT 481 (497)
Q Consensus 409 ~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai-~~Gv~V~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~-----~~~R~ 481 (497)
+..++.+.+|.|+|++||+||++||.+|++|| ++||||+|||+|||||||||.+| |++|||||+||++ |++|+
T Consensus 378 ~~~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t~~R~ 457 (476)
T PRK09589 378 GAIDQREADGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGTLERS 457 (476)
T ss_pred ccCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcccccc
Confidence 98887777889999999999999999999999 89999999999999999999999 9999999999996 56999
Q ss_pred ccchHHHHHHHHhhc
Q 036937 482 PKMSAYWFKQLLQRD 496 (497)
Q Consensus 482 pK~Sa~~y~~ii~~~ 496 (497)
||+|++||+++|+++
T Consensus 458 pK~S~~wy~~~i~~n 472 (476)
T PRK09589 458 RKKSFYWYRDVIANN 472 (476)
T ss_pred cccHHHHHHHHHHhc
Confidence 999999999999865
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=5.4e-126 Score=1010.20 Aligned_cols=444 Identities=31% Similarity=0.542 Sum_probs=389.0
Q ss_pred cCCCCCCCCeehhccccccccCCcCCCCCCCccceeec---c-CCCccc----CC--CCCCCCCchhhchHHHHHHHHHc
Q 036937 27 SRKSFPEGFVFGTATSAYQVEGMADKDGRGPCIWDVYA---H-TPGHIA----NN--ATADVTVDQYHRYKEDIDLMKNL 96 (497)
Q Consensus 27 ~~~~fp~~FlwG~Atsa~QvEG~~~~~g~~~s~Wd~~~---~-~~~~~~----~~--~~~~~a~d~y~ry~eDi~l~~~l 96 (497)
++.+||++|+||+|||||||||+++++|||+|+||.|. + .|+++. ++ .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999998 4 255542 22 26789999999999999999999
Q ss_pred CCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHH
Q 036937 97 NFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADF 175 (497)
Q Consensus 97 G~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~ 175 (497)
|+++|||||+|+||+|+|. |.+|++||+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+.
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 9999999999999999975 679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcceEEEeecCchhh-----hcccCCC-CCC-CCCCCCcccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Q 036937 176 CFKTFGDRVKNWYTFNEPRVI-----AALGFDD-GSN-PPSRCSKEVNNCTDGNSGTEPYIAAHNMILSHAAAVQRYREK 248 (497)
Q Consensus 176 ~~~~~~d~V~~w~t~NEp~~~-----~~~gy~~-G~~-~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~ 248 (497)
||++|||+|++|+|||||+++ +..||.. |.+ ||+... .++.++|+||+++|||+||+++|+.
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~-----------~~~~~~~~h~~llAHa~A~~~~~~~ 230 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENP-----------EETMYQVLHHQFVASALAVKAARRI 230 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCch-----------hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999987 6778874 765 454221 2458999999999999999999997
Q ss_pred hcCCCCceEEEEecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccCC--CCCCHHHHhhh-cCC
Q 036937 249 YQETQKGNIGILLDFVWYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDRL--PKFTPEEVLMV-QGS 325 (497)
Q Consensus 249 ~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~l--p~ft~~e~~~i-kg~ 325 (497)
. ++++||++++..+++|.+++++|++||++++. ...||+||+++|+||+.|++.+++++ |.++++|+++| +++
T Consensus 231 ~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~ 306 (477)
T PRK15014 231 N---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGT 306 (477)
T ss_pred C---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCC
Confidence 5 68999999999999999999999999998773 22359999999999999999998764 78999999999 589
Q ss_pred cceEEeecCcceeeeCCCCCCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhCCCcEEEee
Q 036937 326 FDYLGVNQYTSYYMFDPPWPKSNISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYGNPIVMLSE 405 (497)
Q Consensus 326 ~DflGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITE 405 (497)
+||||||||++.+|+...........+. . ... .|..+.++++| +|+|+||+.+|+++++||++ ||||||
T Consensus 307 ~DFlGiNyYt~~~v~~~~~~~~~~~~~~-----~--~~~--~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItE 375 (477)
T PRK15014 307 CDYLGFSYYMTNAVKAEGGTGDAISGFE-----G--SVP--NPYVKASDWGW-QIDPVGLRYALCELYERYQK-PLFIVE 375 (477)
T ss_pred CCEEEEcceeCeeeccCCCCCCCccccc-----c--ccC--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcCC-CEEEeC
Confidence 9999999999999975321100000000 0 001 12234567888 99999999999999999986 699999
Q ss_pred cCCCCCCCCCcCcccCChhHHHHHHHHHHHHHHHHH-cCCCEEEEeecccccccccCCC-CCCccceEEEcCC-----CC
Q 036937 406 NGMDDPSNYTVNHLLHDTTRVNYYRDYISQLKKAVD-DGANVTGYFAWSLLDNFEWLLG-YSSRFGITYVDFD-----TL 478 (497)
Q Consensus 406 NG~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~-~Gv~V~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~-----~~ 478 (497)
||++..++.+.+|+|+|++||+||++||++|++||+ +||||+|||+|||||||||.+| |++|||||+||++ ++
T Consensus 376 NG~~~~d~~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~~~~~~ 455 (477)
T PRK15014 376 NGFGAYDKVEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDDGTGDM 455 (477)
T ss_pred CCCCCCCCcCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCCCCccc
Confidence 999998777778999999999999999999999995 9999999999999999999999 9999999999996 46
Q ss_pred CccccchHHHHHHHHhhc
Q 036937 479 KRTPKMSAYWFKQLLQRD 496 (497)
Q Consensus 479 ~R~pK~Sa~~y~~ii~~~ 496 (497)
+|+||+|++||++||+++
T Consensus 456 ~R~pK~S~~wy~~ii~~n 473 (477)
T PRK15014 456 SRSRKKSFNWYKEVIASN 473 (477)
T ss_pred ceecccHHHHHHHHHHhc
Confidence 999999999999999875
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=1.7e-125 Score=1004.71 Aligned_cols=442 Identities=30% Similarity=0.514 Sum_probs=394.3
Q ss_pred CCCCCCeehhccccccccCCcCCCCCCCccceeeccCCCccc------------CC--CCCCCCCchhhchHHHHHHHHH
Q 036937 30 SFPEGFVFGTATSAYQVEGMADKDGRGPCIWDVYAHTPGHIA------------NN--ATADVTVDQYHRYKEDIDLMKN 95 (497)
Q Consensus 30 ~fp~~FlwG~Atsa~QvEG~~~~~g~~~s~Wd~~~~~~~~~~------------~~--~~~~~a~d~y~ry~eDi~l~~~ 95 (497)
+||++|+||+|||||||||+++++|||+|+||.|++.|+++. ++ .++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999998666542 22 2678999999999999999999
Q ss_pred cCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHH
Q 036937 96 LNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYAD 174 (497)
Q Consensus 96 lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~ 174 (497)
||+++|||||+|+||+|+++ +.+|+++|+||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999975 56899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcceEEEeecCchhhhcccCC-CCC-CCCCCCCcccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 036937 175 FCFKTFGDRVKNWYTFNEPRVIAALGFD-DGS-NPPSRCSKEVNNCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQET 252 (497)
Q Consensus 175 ~~~~~~~d~V~~w~t~NEp~~~~~~gy~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~ 252 (497)
.|+++|||+|++|+|||||++++..||. .|. +|||... .+..++|+||+++|||+||+++|+..
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~--- 228 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ-----------DQVKYQAAHHELVASALATKIAHEVN--- 228 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc-----------hHhHHHHHHHHHHHHHHHHHHHHHhC---
Confidence 9999999999999999999999999996 675 5887532 24579999999999999999999964
Q ss_pred CCceEEEEecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccC--CCCCCHHHHhhhcCCcceEE
Q 036937 253 QKGNIGILLDFVWYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDR--LPKFTPEEVLMVQGSFDYLG 330 (497)
Q Consensus 253 ~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~--lp~ft~~e~~~ikg~~DflG 330 (497)
++++||++++..+++|.+++++|++||++++ +.+.||+||+++|+||+.|++.++++ +|.|+++|+++|++++||||
T Consensus 229 ~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlG 307 (474)
T PRK09852 229 PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVS 307 (474)
T ss_pred CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEE
Confidence 6899999999999999999999999998876 56889999999999999999999764 79999999999999999999
Q ss_pred eecCcceeeeCCCCCCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhCCCcEEEeecCCCC
Q 036937 331 VNQYTSYYMFDPPWPKSNISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYGNPIVMLSENGMDD 410 (497)
Q Consensus 331 iNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITENG~~~ 410 (497)
||||++.+|+...... ... .+..+.. .. .|..+.++++| +|+|+||+++|+++++||++ ||||||||++.
T Consensus 308 iNyYt~~~v~~~~~~~--~~~--~~~~~~~--~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~-Pi~ItENG~~~ 377 (474)
T PRK09852 308 FSYYASRCASAEMNAN--NSS--AANVVKS--LR--NPYLQVSDWGW-GIDPLGLRITMNMMYDRYQK-PLFLVENGLGA 377 (474)
T ss_pred EccccCeecccCCCCC--CCC--cCCceec--cc--CCCcccCCCCC-eeChHHHHHHHHHHHHhcCC-CEEEeCCCCCC
Confidence 9999999997532100 000 0000000 01 13345677889 99999999999999999986 69999999998
Q ss_pred CCCCCcCcccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccccCCC-CCCccceEEEcCC-----CCCccccc
Q 036937 411 PSNYTVNHLLHDTTRVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNFEWLLG-YSSRFGITYVDFD-----TLKRTPKM 484 (497)
Q Consensus 411 ~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~~G-y~~RfGL~~VD~~-----~~~R~pK~ 484 (497)
.++.+.++.|+|.+||+||++||.+|++||++||||+|||+|||||||||..| |++|||||+||++ |++|+||+
T Consensus 378 ~d~~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~R~pK~ 457 (474)
T PRK09852 378 KDEIAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLTRTRKK 457 (474)
T ss_pred CCCcCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccceeccc
Confidence 88777788999999999999999999999999999999999999999999999 9999999999996 57999999
Q ss_pred hHHHHHHHHhhc
Q 036937 485 SAYWFKQLLQRD 496 (497)
Q Consensus 485 Sa~~y~~ii~~~ 496 (497)
|++||+++|+++
T Consensus 458 S~~wy~~ii~~n 469 (474)
T PRK09852 458 SFWWYKKVIASN 469 (474)
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=4.8e-123 Score=979.04 Aligned_cols=427 Identities=44% Similarity=0.827 Sum_probs=394.4
Q ss_pred CCCCCeehhccccccccCCcCCCCCCCccceeeccCCCcccCCCCCCCCCchhhchHHHHHHHHHcCCCeeeeccccccc
Q 036937 31 FPEGFVFGTATSAYQVEGMADKDGRGPCIWDVYAHTPGHIANNATADVTVDQYHRYKEDIDLMKNLNFDAYRFSISWSRI 110 (497)
Q Consensus 31 fp~~FlwG~Atsa~QvEG~~~~~g~~~s~Wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri 110 (497)
||++|+||+|||||||||+++++|||+|+||.+.+.|+++.++.++++||||||||+|||++||+||+++|||||+|+||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999998788776777889999999999999999999999999999999999
Q ss_pred cccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHhCCcceEEEee
Q 036937 111 FPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTFGDRVKNWYTF 190 (497)
Q Consensus 111 ~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~ 190 (497)
+|+|.|.+|++++++|+++|++|+++||+|||||+|||+|+||+++ |||.|+++++.|++||+.|+++|||+|++|+||
T Consensus 81 ~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~ 159 (427)
T TIGR03356 81 FPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWITL 159 (427)
T ss_pred ccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEEe
Confidence 9996689999999999999999999999999999999999999988 999999999999999999999999999999999
Q ss_pred cCchhhhcccCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCcccccCC
Q 036937 191 NEPRVIAALGFDDGSNPPSRCSKEVNNCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQETQKGNIGILLDFVWYEPHT 270 (497)
Q Consensus 191 NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~ 270 (497)
|||++++..||..|.+||+.++ .+..++++||+++|||+||++||++. ++++||++++..+++|.+
T Consensus 160 NEp~~~~~~~y~~G~~~P~~~~-----------~~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~~ 225 (427)
T TIGR03356 160 NEPWCSAFLGYGLGVHAPGLRD-----------LRAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPAS 225 (427)
T ss_pred cCcceecccchhhccCCCCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCC
Confidence 9999999999999999998543 13579999999999999999999975 689999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccCCCCCCHHHHhhhcCCcceEEeecCcceeeeCCCCCCCCCC
Q 036937 271 RSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDRLPKFTPEEVLMVQGSFDYLGVNQYTSYYMFDPPWPKSNIS 350 (497)
Q Consensus 271 ~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~e~~~ikg~~DflGiNyY~~~~v~~~~~~~~~~~ 350 (497)
++++|+.||++++++.++||+||++.|+||+.|++.++ .+|.||++|++.+++++||||||||++.+|+...... .
T Consensus 226 ~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~---~ 301 (427)
T TIGR03356 226 DSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG---A 301 (427)
T ss_pred CCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC---C
Confidence 99999999999999999999999999999999999997 4799999999999999999999999999997532110 0
Q ss_pred CCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCCCcCcccCChhHHHHHH
Q 036937 351 SYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYGNPIVMLSENGMDDPSNYTVNHLLHDTTRVNYYR 430 (497)
Q Consensus 351 ~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITENG~~~~~~~~~~g~i~D~~Ri~yl~ 430 (497)
.. . . . .+..+.++++| +|+|+||+++|+++++||++|||||||||++..++.+ +|+++|++||+||+
T Consensus 302 ~~---~-----~-~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~-~g~~~D~~Ri~yl~ 368 (427)
T TIGR03356 302 GF---V-----E-V--PEGVPKTAMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVT-DGEVHDPERIAYLR 368 (427)
T ss_pred Cc---c-----c-c--CCCCCcCCCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCc-CCCcCCHHHHHHHH
Confidence 00 0 0 0 11123566889 9999999999999999999889999999999887665 78899999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEeecccccccccCCCCCCccceEEEcCCCCCccccchHHHH
Q 036937 431 DYISQLKKAVDDGANVTGYFAWSLLDNFEWLLGYSSRFGITYVDFDTLKRTPKMSAYWF 489 (497)
Q Consensus 431 ~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~R~pK~Sa~~y 489 (497)
+||++|++||++||||+|||+|||+|||||.+||++||||++||++|++|+||+|++||
T Consensus 369 ~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~~~~R~~K~S~~wy 427 (427)
T TIGR03356 369 DHLAALARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYETQKRTPKDSAKWY 427 (427)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccccccchhcccccccceEEECCCCCcccccceeeeC
Confidence 99999999999999999999999999999999999999999999999999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.62 E-value=1.8e-13 Score=135.83 Aligned_cols=250 Identities=15% Similarity=0.186 Sum_probs=160.4
Q ss_pred cccccccccCCCCCChhhhHHHHHHHHHHHHcCCee--EEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHhCC
Q 036937 105 ISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITP--YANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTFGD 182 (497)
Q Consensus 105 i~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p--~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~d 182 (497)
+.|++++|++ |.+|+ +..|.+++.++++||++ -+.+.|...|.|+... + .++..+.+.+|++.+++||++
T Consensus 1 ~kW~~~ep~~-G~~n~---~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~g 72 (254)
T smart00633 1 MKWDSTEPSR-GQFNF---SGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYKG 72 (254)
T ss_pred CCcccccCCC-CccCh---HHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhCC
Confidence 3699999999 99999 56778999999999995 4456788999998742 2 567789999999999999999
Q ss_pred cceEEEeecCchhhhcccCCCCCCCCCCCCcccCCCCCCCCCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCCceEEEEe
Q 036937 183 RVKNWYTFNEPRVIAALGFDDGSNPPSRCSKEVNNCTDGNSGTEPYIAA-HNMILSHAAAVQRYREKYQETQKGNIGILL 261 (497)
Q Consensus 183 ~V~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~-hn~l~AHa~A~~~~r~~~~~~~~~~IGi~~ 261 (497)
+|..|-++|||...... |... ...+.+. ... -..|.++.|+.. |++++-+.
T Consensus 73 ~i~~wdV~NE~~~~~~~---------~~~~------------~~w~~~~G~~~---i~~af~~ar~~~---P~a~l~~N- 124 (254)
T smart00633 73 KIYAWDVVNEALHDNGS---------GLRR------------SVWYQILGEDY---IEKAFRYAREAD---PDAKLFYN- 124 (254)
T ss_pred cceEEEEeeecccCCCc---------cccc------------chHHHhcChHH---HHHHHHHHHHhC---CCCEEEEe-
Confidence 99999999999852110 1110 0111111 011 123556666654 56666442
Q ss_pred cCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccCCCCCCHHHHhhhcCCcceEEeecCcceeeeC
Q 036937 262 DFVWYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDRLPKFTPEEVLMVQGSFDYLGVNQYTSYYMFD 341 (497)
Q Consensus 262 ~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~e~~~ikg~~DflGiNyY~~~~v~~ 341 (497)
.+....+ . .. ......+ .+. +..-...+|-||++... . .
T Consensus 125 dy~~~~~---~-~k---~~~~~~~------------------v~~------------l~~~g~~iDgiGlQ~H~---~-~ 163 (254)
T smart00633 125 DYNTEEP---N-AK---RQAIYEL------------------VKK------------LKAKGVPIDGIGLQSHL---S-L 163 (254)
T ss_pred ccCCcCc---c-HH---HHHHHHH------------------HHH------------HHHCCCccceeeeeeee---c-C
Confidence 1111111 0 00 0111111 111 11112347999995321 0 0
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCCCcCcccC
Q 036937 342 PPWPKSNISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYGNPIVMLSENGMDDPSNYTVNHLLH 421 (497)
Q Consensus 342 ~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITENG~~~~~~~~~~g~i~ 421 (497)
. ...|..|...|..+.+. + .||+|||.++...+ .
T Consensus 164 -~-----------------------------------~~~~~~~~~~l~~~~~~-g-~pi~iTE~dv~~~~--------~ 197 (254)
T smart00633 164 -G-----------------------------------SPNIAEIRAALDRFASL-G-LEIQITELDISGYP--------N 197 (254)
T ss_pred -C-----------------------------------CCCHHHHHHHHHHHHHc-C-CceEEEEeecCCCC--------c
Confidence 0 00245799999999765 4 58999999998752 1
Q ss_pred ChhHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccccCCCCCCccceEEEcCCCCCccccchHHH
Q 036937 422 DTTRVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNFEWLLGYSSRFGITYVDFDTLKRTPKMSAYW 488 (497)
Q Consensus 422 D~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~~Gy~~RfGL~~VD~~~~~R~pK~Sa~~ 488 (497)
...+.+++++.|..+..- -.|.|.+.|.+.|...|..+ .+.||+.=|+ +||++.++
T Consensus 198 ~~~qA~~~~~~l~~~~~~----p~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~~-----~~kpa~~~ 253 (254)
T smart00633 198 PQAQAADYEEVFKACLAH----PAVTGVTVWGVTDKYSWLDG--GAPLLFDANY-----QPKPAYWA 253 (254)
T ss_pred HHHHHHHHHHHHHHHHcC----CCeeEEEEeCCccCCcccCC--CCceeECCCC-----CCChhhhc
Confidence 156677777777666542 27899999999999999765 5678874333 58887764
No 15
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.39 E-value=1.3e-11 Score=122.81 Aligned_cols=109 Identities=20% Similarity=0.284 Sum_probs=90.6
Q ss_pred chHHHHHHHHHcCCCeeeecccccccc-ccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCC-CC
Q 036937 85 RYKEDIDLMKNLNFDAYRFSISWSRIF-PEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGL-LD 162 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~W~ri~-P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw-~~ 162 (497)
..++|++.|+++|+|++|+.|.|..++ |.+.+.++...++.++++|+.+.++||.++|+||+. |.|.... ++. ..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~~ 98 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGNN 98 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTTH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccccc
Confidence 568999999999999999999998888 565456999999999999999999999999999875 7674332 233 33
Q ss_pred hhhHHHHHHHHHHHHHHhCC--cceEEEeecCchhh
Q 036937 163 CQVVKDYADYADFCFKTFGD--RVKNWYTFNEPRVI 196 (497)
Q Consensus 163 ~~~~~~f~~ya~~~~~~~~d--~V~~w~t~NEp~~~ 196 (497)
....+.|.++++.++++|++ .|..|.++|||...
T Consensus 99 ~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 99 DTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred hhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 45678899999999999944 78899999999864
No 16
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.28 E-value=6.6e-12 Score=131.41 Aligned_cols=109 Identities=27% Similarity=0.426 Sum_probs=88.6
Q ss_pred hchHHHHHHHHHcCCCeeee-ccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHh-----
Q 036937 84 HRYKEDIDLMKNLNFDAYRF-SISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKY----- 157 (497)
Q Consensus 84 ~ry~eDi~l~~~lG~~~~R~-si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~----- 157 (497)
..+++|+++|+++|+|.+|+ .++|++|||++ |++|+ ..+|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~ 85 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILP 85 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccccc
Confidence 46899999999999999996 57999999999 99999 6789999999999999999999999999998653
Q ss_pred ----------CC-----CCChhhHHHHHHHHHHHHHHhCC--cceEEEeecCchhh
Q 036937 158 ----------GG-----LLDCQVVKDYADYADFCFKTFGD--RVKNWYTFNEPRVI 196 (497)
Q Consensus 158 ----------gg-----w~~~~~~~~f~~ya~~~~~~~~d--~V~~w~t~NEp~~~ 196 (497)
|. ..+|...+.+.++++.++++|++ .|-.|.+.|||...
T Consensus 86 ~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 86 VDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 11 23567788889999999999988 58899999999753
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.18 E-value=7.7e-09 Score=105.83 Aligned_cols=247 Identities=20% Similarity=0.224 Sum_probs=141.6
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCC---CcHHHHHHhCCCCC-
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYD---MPLALQEKYGGLLD- 162 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~---~P~~l~~~~ggw~~- 162 (497)
++=+++||+.|+|++|+-+ | +.|...|.-|. +.-..+..+.+++||+.+|++|--| =|.--..+ ..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g~~~~---~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P-~aW~~~ 99 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGGYNDL---EDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKP-AAWANL 99 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTTTTSH---HHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTSS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccccCCH---HHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCC-ccCCCC
Confidence 3447999999999999976 3 23332255565 6778999999999999999998433 34222222 57888
Q ss_pred --hhhHHHHHHHHHHHHHHhCC---cceEEEeecCchhhhcccCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHHHH
Q 036937 163 --CQVVKDYADYADFCFKTFGD---RVKNWYTFNEPRVIAALGFDDGSNPPSRCSKEVNNCTDGNSGTEPYIAAHNMILS 237 (497)
Q Consensus 163 --~~~~~~f~~ya~~~~~~~~d---~V~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~A 237 (497)
.+..+...+|.+.+.+.+++ .++++.+=||.+.-.+ +|-|... .+...-.++.|
T Consensus 100 ~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~~--------------~~~~~a~ll~a 158 (332)
T PF07745_consen 100 SFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKPS--------------NWDNLAKLLNA 158 (332)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCTT---------------HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCcc--------------CHHHHHHHHHH
Confidence 56778889999999988844 6788888899874221 4444321 23334455655
Q ss_pred HHHHHHHHHHhhcCCCCceEEEEecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccCCCCCCHH
Q 036937 238 HAAAVQRYREKYQETQKGNIGILLDFVWYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDRLPKFTPE 317 (497)
Q Consensus 238 Ha~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~ 317 (497)
=.+| +|+.. ++.+|.+.+... .|... ..||.+-+..
T Consensus 159 g~~A---Vr~~~---p~~kV~lH~~~~---------~~~~~--------~~~~f~~l~~--------------------- 194 (332)
T PF07745_consen 159 GIKA---VREVD---PNIKVMLHLANG---------GDNDL--------YRWFFDNLKA--------------------- 194 (332)
T ss_dssp HHHH---HHTHS---STSEEEEEES-T---------TSHHH--------HHHHHHHHHH---------------------
T ss_pred HHHH---HHhcC---CCCcEEEEECCC---------CchHH--------HHHHHHHHHh---------------------
Confidence 4444 55543 677886665432 11111 1233333221
Q ss_pred HHhhhcCCcceEEeecCcceeeeCCCCCCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhC
Q 036937 318 EVLMVQGSFDYLGVNQYTSYYMFDPPWPKSNISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYG 397 (497)
Q Consensus 318 e~~~ikg~~DflGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~ 397 (497)
.....|.||++||.- | .-....|...|+.+.+||+
T Consensus 195 ----~g~d~DviGlSyYP~----------------------------------------w-~~~l~~l~~~l~~l~~ry~ 229 (332)
T PF07745_consen 195 ----AGVDFDVIGLSYYPF----------------------------------------W-HGTLEDLKNNLNDLASRYG 229 (332)
T ss_dssp ----TTGG-SEEEEEE-ST----------------------------------------T-ST-HHHHHHHHHHHHHHHT
T ss_pred ----cCCCcceEEEecCCC----------------------------------------C-cchHHHHHHHHHHHHHHhC
Confidence 123469999999941 1 1134679999999999997
Q ss_pred CCcEEEeecCCCCCCC-CCcCcc------------cCChhHHHHHHHHHHHHHHHHHc--CCCEEEEeecccc
Q 036937 398 NPIVMLSENGMDDPSN-YTVNHL------------LHDTTRVNYYRDYISQLKKAVDD--GANVTGYFAWSLL 455 (497)
Q Consensus 398 ~~pI~ITENG~~~~~~-~~~~g~------------i~D~~Ri~yl~~hl~~v~~Ai~~--Gv~V~GY~~WSl~ 455 (497)
+ ||+|+|+|++...+ .+..+. ..-.-..+|| ..+.+++.+ +-...|.|+|--.
T Consensus 230 K-~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l----~~l~~~v~~~p~~~g~GvfYWeP~ 297 (332)
T PF07745_consen 230 K-PVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFL----RDLINAVKNVPNGGGLGVFYWEPA 297 (332)
T ss_dssp --EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHH----HHHHHHHHTS--TTEEEEEEE-TT
T ss_pred C-eeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHH----HHHHHHHHHhccCCeEEEEeeccc
Confidence 5 89999999876521 100000 0112344454 555565544 6799999999543
No 18
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=99.08 E-value=3.1e-08 Score=101.67 Aligned_cols=271 Identities=19% Similarity=0.211 Sum_probs=158.0
Q ss_pred eeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEE--EeccCCCcHHHHHHhCCCCChh---hHHHHHHHHHH
Q 036937 101 YRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYA--NLYHYDMPLALQEKYGGLLDCQ---VVKDYADYADF 175 (497)
Q Consensus 101 ~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v--tL~H~~~P~~l~~~~ggw~~~~---~~~~f~~ya~~ 175 (497)
..-.+-|..++|.+ |.+|+ +-.|++++.++++||++-- .+.|--.|.|+... .-+...+ ......+|.+.
T Consensus 40 ~eN~~Kw~~~e~~~-g~~~~---~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~ 114 (320)
T PF00331_consen 40 PENEMKWGSIEPEP-GRFNF---ESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKT 114 (320)
T ss_dssp ESSTTSHHHHESBT-TBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHH
T ss_pred eccccchhhhcCCC-CccCc---cchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHH
Confidence 33457899999999 99999 5578999999999999773 44577899999853 1233333 77899999999
Q ss_pred HHHHhCC--cceEEEeecCchhhhcccCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 036937 176 CFKTFGD--RVKNWYTFNEPRVIAALGFDDGSNPPSRCSKEVNNCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQETQ 253 (497)
Q Consensus 176 ~~~~~~d--~V~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~ 253 (497)
++.||++ +|..|=++|||..-.. .+-|.. ....++++-. ---..|.+.-|+.. |
T Consensus 115 v~~~y~~~g~i~~WDVvNE~i~~~~-------~~~~~r------------~~~~~~~lG~--~yi~~aF~~A~~~~---P 170 (320)
T PF00331_consen 115 VVTRYKDKGRIYAWDVVNEAIDDDG-------NPGGLR------------DSPWYDALGP--DYIADAFRAAREAD---P 170 (320)
T ss_dssp HHHHTTTTTTESEEEEEES-B-TTS-------SSSSBC------------TSHHHHHHTT--CHHHHHHHHHHHHH---T
T ss_pred HHhHhccccceEEEEEeeecccCCC-------cccccc------------CChhhhcccH--hHHHHHHHHHHHhC---C
Confidence 9999994 8999999999964221 000111 1122332210 01122334445543 4
Q ss_pred CceEEEEecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccCCCCCCHHHHhhhcCCcceEEeec
Q 036937 254 KGNIGILLDFVWYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDRLPKFTPEEVLMVQGSFDYLGVNQ 333 (497)
Q Consensus 254 ~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~e~~~ikg~~DflGiNy 333 (497)
+++.-+.... .+. . +.+ ..+. .|.+.+ ..-..++|=||++-
T Consensus 171 ~a~L~~NDy~--~~~--~-------~k~-~~~~---------------~lv~~l------------~~~gvpIdgIG~Q~ 211 (320)
T PF00331_consen 171 NAKLFYNDYN--IES--P-------AKR-DAYL---------------NLVKDL------------KARGVPIDGIGLQS 211 (320)
T ss_dssp TSEEEEEESS--TTS--T-------HHH-HHHH---------------HHHHHH------------HHTTHCS-EEEEEE
T ss_pred CcEEEecccc--ccc--h-------HHH-HHHH---------------HHHHHH------------HhCCCccceechhh
Confidence 5555442221 111 1 011 1110 011111 11112479999864
Q ss_pred CcceeeeCCCCCCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhCCCcEEEeecCCCCCCC
Q 036937 334 YTSYYMFDPPWPKSNISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYGNPIVMLSENGMDDPSN 413 (497)
Q Consensus 334 Y~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITENG~~~~~~ 413 (497)
.- .. . . . |..|...|+++.+ .+ .||.|||.-+.....
T Consensus 212 H~----~~------------------------------~----~-~--~~~i~~~l~~~~~-~G-l~i~ITElDv~~~~~ 248 (320)
T PF00331_consen 212 HF----DA------------------------------G----Y-P--PEQIWNALDRFAS-LG-LPIHITELDVRDDDN 248 (320)
T ss_dssp EE----ET------------------------------T----S-S--HHHHHHHHHHHHT-TT-SEEEEEEEEEESSST
T ss_pred cc----CC------------------------------C----C-C--HHHHHHHHHHHHH-cC-CceEEEeeeecCCCC
Confidence 31 00 0 0 1 6789999999865 45 689999998887532
Q ss_pred CCcCcccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccccCCCC-CCccceEEEcCCCCCccccchHHHHHH
Q 036937 414 YTVNHLLHDTTRVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNFEWLLGY-SSRFGITYVDFDTLKRTPKMSAYWFKQ 491 (497)
Q Consensus 414 ~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~~Gy-~~RfGL~~VD~~~~~R~pK~Sa~~y~~ 491 (497)
.. ..-.+..+.+++++.+..+...-.+ .|.|.+.|.+.|+.+|-... ..+=+|+.-| -.|||+++.+.+
T Consensus 249 ~~--~~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~-----~~~Kpa~~~~~~ 318 (320)
T PF00331_consen 249 PP--DAEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDGYSWRPDTPPDRPLLFDED-----YQPKPAYDAIVD 318 (320)
T ss_dssp TS--CHHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTTGSTTGGHSEG--SSB-TT-----SBB-HHHHHHHH
T ss_pred Cc--chHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCCCcccCCCCCCCCeeECCC-----cCCCHHHHHHHh
Confidence 10 0112456777777777666654222 89999999999999997653 2344565433 368999887765
No 19
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.97 E-value=7.2e-09 Score=112.22 Aligned_cols=292 Identities=20% Similarity=0.279 Sum_probs=139.2
Q ss_pred chHHHHHHHH-HcCCCeeeec--c--ccccccc-cCCC--CCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHH
Q 036937 85 RYKEDIDLMK-NLNFDAYRFS--I--SWSRIFP-EGTG--TVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEK 156 (497)
Q Consensus 85 ry~eDi~l~~-~lG~~~~R~s--i--~W~ri~P-~~~g--~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 156 (497)
.+++.+..++ ++|++.+||- + +..-..+ ++.| .+|+ ...|+++|.|+++||+|+|.|-. +|.++...
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 4677777765 9999999975 2 2222322 2223 2788 77889999999999999999964 67665421
Q ss_pred ------hCCCC-ChhhHHHHHHHHHHHHHHh----CC-cce--EEEeecCchhhhcccCCCCCCCCCCCCcccCCCCCCC
Q 036937 157 ------YGGLL-DCQVVKDYADYADFCFKTF----GD-RVK--NWYTFNEPRVIAALGFDDGSNPPSRCSKEVNNCTDGN 222 (497)
Q Consensus 157 ------~ggw~-~~~~~~~f~~ya~~~~~~~----~d-~V~--~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~ 222 (497)
+.|+. .|+..+.|.++++.+++|+ |. .|. +|.+||||++..+ |..|.
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~~------------ 175 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDGT------------ 175 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG-------------
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCCC------------
Confidence 01222 3566777777776666555 42 455 5689999996321 11110
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChh
Q 036937 223 SGTEPYIAAHNMILSHAAAVQRYREKYQETQKGNIGILLDFVWYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRT 302 (497)
Q Consensus 223 ~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~ 302 (497)
.+.| ..+. ..+++++|+.. |..+||-.--. . ... ... ..|
T Consensus 176 --~~ey---~~ly---~~~~~~iK~~~---p~~~vGGp~~~----~--~~~---~~~---~~~----------------- 215 (486)
T PF01229_consen 176 --PEEY---FELY---DATARAIKAVD---PELKVGGPAFA----W--AYD---EWC---EDF----------------- 215 (486)
T ss_dssp --HHHH---HHHH---HHHHHHHHHH----TTSEEEEEEEE----T--T-T---HHH---HHH-----------------
T ss_pred --HHHH---HHHH---HHHHHHHHHhC---CCCcccCcccc----c--cHH---HHH---HHH-----------------
Confidence 1112 1233 33456666654 68899854100 0 000 011 111
Q ss_pred hHHhhccCCCCCCHHHHhhhcCCcceEEeecCcceeeeCCCCCCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccCh
Q 036937 303 MQENVGDRLPKFTPEEVLMVQGSFDYLGVNQYTSYYMFDPPWPKSNISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVP 382 (497)
Q Consensus 303 ~~~~l~~~lp~ft~~e~~~ikg~~DflGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P 382 (497)
++++..+ ...+|||.+..|.......... .. .. . ... -..+.|
T Consensus 216 -l~~~~~~------------~~~~DfiS~H~y~~~~~~~~~~------~~------~~-------~---~~~--~~~~~~ 258 (486)
T PF01229_consen 216 -LEFCKGN------------NCPLDFISFHSYGTDSAEDINE------NM------YE-------R---IED--SRRLFP 258 (486)
T ss_dssp -HHHHHHC------------T---SEEEEEEE-BESESE-SS-------E------EE-------E---B----HHHHHH
T ss_pred -HHHHhcC------------CCCCCEEEEEecccccccccch------hH------Hh-------h---hhh--HHHHHH
Confidence 1111111 1347999999997543211000 00 00 0 000 001222
Q ss_pred HHHHHHHHHHHHH-hCCCcEEEeecCCCCCCCCCcCcccCC-hhHHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccc
Q 036937 383 WGLYNALMYVKER-YGNPIVMLSENGMDDPSNYTVNHLLHD-TTRVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNFEW 460 (497)
Q Consensus 383 ~gl~~~l~~~~~r-Y~~~pI~ITENG~~~~~~~~~~g~i~D-~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW 460 (497)
.+..+.+.+.+. +++.|+++||=...... ...++| .++..|+... ++. ..|..+-++.+|++.|.||=
T Consensus 259 -~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~----~~~~~dt~~~aA~i~k~---lL~--~~~~~l~~~sywt~sD~Fee 328 (486)
T PF01229_consen 259 -ELKETRPIINDEADPNLPLYITEWNASISP----RNPQHDTCFKAAYIAKN---LLS--NDGAFLDSFSYWTFSDRFEE 328 (486)
T ss_dssp -HHHHHHHHHHTSSSTT--EEEEEEES-SST----T-GGGGSHHHHHHHHH----HHH--HGGGT-SEEEES-SBS---T
T ss_pred -HHHHHHHHHhhccCCCCceeecccccccCC----CcchhccccchhhHHHH---HHH--hhhhhhhhhhccchhhhhhc
Confidence 244443334332 44568999995554432 123344 4555555443 222 24566777889999999983
Q ss_pred CC----CCCCccceEEEcCCCCCccccchHHHHHHH
Q 036937 461 LL----GYSSRFGITYVDFDTLKRTPKMSAYWFKQL 492 (497)
Q Consensus 461 ~~----Gy~~RfGL~~VD~~~~~R~pK~Sa~~y~~i 492 (497)
.. -+---|||+..+ .++|+|.+.|+=+
T Consensus 329 ~~~~~~pf~ggfGLlt~~-----gI~KPa~~A~~~L 359 (486)
T PF01229_consen 329 NGTPRKPFHGGFGLLTKL-----GIPKPAYYAFQLL 359 (486)
T ss_dssp TSS-SSSSSS-S-SEECC-----CEE-HHHHHHHHH
T ss_pred cCCCCCceecchhhhhcc-----CCCchHHHHHHHH
Confidence 21 144458998754 6899998887643
No 20
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.97 E-value=1.3e-07 Score=105.25 Aligned_cols=262 Identities=17% Similarity=0.177 Sum_probs=150.5
Q ss_pred hchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHH-------
Q 036937 84 HRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEK------- 156 (497)
Q Consensus 84 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~------- 156 (497)
..+..|+++||++|+|++|+|- .|.. + .+++.|-+.||=++.-+.-+....|....
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~~-----~-------~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~ 375 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPYS-----E-------EMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKP 375 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCCC-----H-------HHHHHHHhcCcEEEEecccccccccccccccccccc
Confidence 4578999999999999999952 2322 2 67889999999777655322222222100
Q ss_pred hCCCC----ChhhHHHHHHHHHHHHHHhCC--cceEEEeecCchhhhcccCCCCCCCCCCCCcccCCCCCCCCCChHHHH
Q 036937 157 YGGLL----DCQVVKDYADYADFCFKTFGD--RVKNWYTFNEPRVIAALGFDDGSNPPSRCSKEVNNCTDGNSGTEPYIA 230 (497)
Q Consensus 157 ~ggw~----~~~~~~~f~~ya~~~~~~~~d--~V~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~ 230 (497)
...|. +|+..+.+.+-++.+++++.. -|-.|.+-||+..- . .....
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~--------------~--------------~~~~~ 427 (604)
T PRK10150 376 KETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR--------------E--------------QGARE 427 (604)
T ss_pred cccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc--------------c--------------hhHHH
Confidence 01222 356778888889999999877 57799999996310 0 00111
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCceEEEEecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccC
Q 036937 231 AHNMILSHAAAVQRYREKYQETQKGNIGILLDFVWYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDR 310 (497)
Q Consensus 231 ~hn~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~ 310 (497)
. +...++++|+.- +...|....+... .+ ..
T Consensus 428 ~------~~~l~~~~k~~D---ptR~vt~~~~~~~--------------------------~~-~~-------------- 457 (604)
T PRK10150 428 Y------FAPLAELTRKLD---PTRPVTCVNVMFA--------------------------TP-DT-------------- 457 (604)
T ss_pred H------HHHHHHHHHhhC---CCCceEEEecccC--------------------------Cc-cc--------------
Confidence 1 223345556653 2333433321100 00 00
Q ss_pred CCCCCHHHHhhhcCCcceEEeecCcceeeeCCCCCCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHH
Q 036937 311 LPKFTPEEVLMVQGSFDYLGVNQYTSYYMFDPPWPKSNISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALM 390 (497)
Q Consensus 311 lp~ft~~e~~~ikg~~DflGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~ 390 (497)
..+...+|++|+|.|...+..... . .-.-..|...+.
T Consensus 458 ---------~~~~~~~Dv~~~N~Y~~wy~~~~~----------------------------~------~~~~~~~~~~~~ 494 (604)
T PRK10150 458 ---------DTVSDLVDVLCLNRYYGWYVDSGD----------------------------L------ETAEKVLEKELL 494 (604)
T ss_pred ---------ccccCcccEEEEcccceecCCCCC----------------------------H------HHHHHHHHHHHH
Confidence 001123699999988643311100 0 000012445555
Q ss_pred HHHHHhCCCcEEEeecCCCCCCCC--CcCcccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccccCCCCC---
Q 036937 391 YVKERYGNPIVMLSENGMDDPSNY--TVNHLLHDTTRVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNFEWLLGYS--- 465 (497)
Q Consensus 391 ~~~~rY~~~pI~ITENG~~~~~~~--~~~g~i~D~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~~Gy~--- 465 (497)
...+.| +.||+|||.|.+..... ..++.-..++...|+++|+..+. +-=-|.|-|+|.++|- .+..|..
T Consensus 495 ~~~~~~-~kP~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~----~~p~~~G~~iW~~~D~-~~~~g~~~~~ 568 (604)
T PRK10150 495 AWQEKL-HKPIIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFD----RVPAVVGEQVWNFADF-ATSQGILRVG 568 (604)
T ss_pred HHHHhc-CCCEEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHh----cCCceEEEEEEeeecc-CCCCCCcccC
Confidence 566666 46899999996442110 00112235667777777766443 4468999999999993 2222211
Q ss_pred -CccceEEEcCCCCCccccchHHHHHHHHh
Q 036937 466 -SRFGITYVDFDTLKRTPKMSAYWFKQLLQ 494 (497)
Q Consensus 466 -~RfGL~~VD~~~~~R~pK~Sa~~y~~ii~ 494 (497)
...||+. ..|+||+++++||+.-+
T Consensus 569 g~~~Gl~~-----~dr~~k~~~~~~k~~~~ 593 (604)
T PRK10150 569 GNKKGIFT-----RDRQPKSAAFLLKKRWT 593 (604)
T ss_pred CCcceeEc-----CCCCChHHHHHHHHHhh
Confidence 3567753 46899999999998764
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.77 E-value=1.9e-06 Score=86.39 Aligned_cols=272 Identities=17% Similarity=0.192 Sum_probs=160.5
Q ss_pred eccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEE-Ee-ccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHh
Q 036937 103 FSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYA-NL-YHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTF 180 (497)
Q Consensus 103 ~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v-tL-~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 180 (497)
=-+-|.-|+|+. |.+|+++ -|.+.+-++++||..-- || .|--.|.|+.. ..+..+...+...++...|++||
T Consensus 65 nemKwe~i~p~~-G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rY 138 (345)
T COG3693 65 NEMKWEAIEPER-GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRY 138 (345)
T ss_pred cccccccccCCC-CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhc
Confidence 345799999987 9999965 57899999999997432 22 36678999963 34777899999999999999999
Q ss_pred CCcceEEEeecCchhhhcccCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEE
Q 036937 181 GDRVKNWYTFNEPRVIAALGFDDGSNPPSRCSKEVNNCTDGNSGTEPYIAAHNMILSHAAAVQRYREKYQETQKGNIGIL 260 (497)
Q Consensus 181 ~d~V~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn~l~AHa~A~~~~r~~~~~~~~~~IGi~ 260 (497)
.+.|..|=+.|||-- ...++-...|.-+.. ..+ .+.+ |.+.-|+. .|+++.-+.
T Consensus 139 kg~~~sWDVVNE~vd-d~g~~R~s~w~~~~~------------gpd------~I~~----aF~~Area---dP~AkL~~N 192 (345)
T COG3693 139 KGSVASWDVVNEAVD-DQGSLRRSAWYDGGT------------GPD------YIKL----AFHIAREA---DPDAKLVIN 192 (345)
T ss_pred cCceeEEEecccccC-CCchhhhhhhhccCC------------ccH------HHHH----HHHHHHhh---CCCceEEee
Confidence 999999999999854 221221111111100 111 1222 33333553 367776543
Q ss_pred ecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccCCCCCCHHHHhhhcC-CcceEEeecCcceee
Q 036937 261 LDFVWYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDRLPKFTPEEVLMVQG-SFDYLGVNQYTSYYM 339 (497)
Q Consensus 261 ~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ft~~e~~~ikg-~~DflGiNyY~~~~v 339 (497)
.=. ...++ +.+. .|. + |++.|++ +| ++|=+|++-= .
T Consensus 193 DY~-----ie~~~----~kr~--~~~-n--------------lI~~Lke-------------kG~pIDgiG~QsH----~ 229 (345)
T COG3693 193 DYS-----IEGNP----AKRN--YVL-N--------------LIEELKE-------------KGAPIDGIGIQSH----F 229 (345)
T ss_pred ccc-----ccCCh----HHHH--HHH-H--------------HHHHHHH-------------CCCCccceeeeee----e
Confidence 211 11222 1111 110 0 2222211 34 3798988632 0
Q ss_pred eCCCCCCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHHHHhCCCcEEEeecCCCCCCCCCcCcc
Q 036937 340 FDPPWPKSNISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVKERYGNPIVMLSENGMDDPSNYTVNHL 419 (497)
Q Consensus 340 ~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~~rY~~~pI~ITENG~~~~~~~~~~g~ 419 (497)
+- +| . .++-++..+..+.+. + .||+|||--|.+.. ++
T Consensus 230 ~~----------------------------------~~-~-~~~~~~~a~~~~~k~-G-l~i~VTELD~~~~~-P~---- 266 (345)
T COG3693 230 SG----------------------------------DG-P-SIEKMRAALLKFSKL-G-LPIYVTELDMSDYT-PD---- 266 (345)
T ss_pred cC----------------------------------CC-C-CHHHHHHHHHHHhhc-C-CCceEEEeeeeccC-CC----
Confidence 00 01 1 122334444444444 4 58999999988743 11
Q ss_pred cCChhHHHHHHHHH--HHHHHHHHcCCCEEEEeecccccccccCCCCCCccce---EEEcCCCCCccccchHHHHHHHHh
Q 036937 420 LHDTTRVNYYRDYI--SQLKKAVDDGANVTGYFAWSLLDNFEWLLGYSSRFGI---TYVDFDTLKRTPKMSAYWFKQLLQ 494 (497)
Q Consensus 420 i~D~~Ri~yl~~hl--~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~~Gy~~RfGL---~~VD~~~~~R~pK~Sa~~y~~ii~ 494 (497)
.+..|..-.++.. +.-.-......+|.+.+.|.++|+++|..|..+|++= +=+|- .=.||+..++..++.+
T Consensus 267 -~~~p~~~~~~~~~~~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~D~---n~~pKPa~~aI~e~la 342 (345)
T COG3693 267 -SGAPRLYLQKAASRAKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLFDD---NYQPKPAYKAIAEVLA 342 (345)
T ss_pred -CccHHHHHHHHHHHHHHHHHHHhcccccceEEEeeeccCcccccCCccCcCCCCCcccCC---CCCcchHHHHHHHHhc
Confidence 2233333333322 1112223467789999999999999999998888851 11122 2369999999988776
Q ss_pred hc
Q 036937 495 RD 496 (497)
Q Consensus 495 ~~ 496 (497)
.+
T Consensus 343 ~~ 344 (345)
T COG3693 343 PH 344 (345)
T ss_pred CC
Confidence 53
No 22
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=3.3e-07 Score=101.22 Aligned_cols=119 Identities=20% Similarity=0.324 Sum_probs=93.8
Q ss_pred chHHHHHHHHHcCCCeeeec-cccccccccCCCCCChhhhHHHHHH-HHHHHHcCCeeEEEe-ccCCCcHHHHHHh----
Q 036937 85 RYKEDIDLMKNLNFDAYRFS-ISWSRIFPEGTGTVNQKGVDYYNRL-IDYMLEQGITPYANL-YHYDMPLALQEKY---- 157 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~s-i~W~ri~P~~~g~~n~~~l~~y~~~-i~~l~~~gi~p~vtL-~H~~~P~~l~~~~---- 157 (497)
-|.+|+++||++|+|++|.+ ++|++++|+. |++|+. +.|.. |+.+.+.||..++.- .....|.|+..+|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~PeiL 106 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE-GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEIL 106 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc-cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhhe
Confidence 47899999999999999995 5999999999 999996 66666 999999999999988 7788999998764
Q ss_pred -----------CCCCChhhHH-HHHHHHHH----HHHH-hCC--cceEEEeecCchh-hhcccCCCCCCC
Q 036937 158 -----------GGLLDCQVVK-DYADYADF----CFKT-FGD--RVKNWYTFNEPRV-IAALGFDDGSNP 207 (497)
Q Consensus 158 -----------ggw~~~~~~~-~f~~ya~~----~~~~-~~d--~V~~w~t~NEp~~-~~~~gy~~G~~~ 207 (497)
|+|.+-.... .+.+|++. +.+| |++ .|-.|.+-||... .++..|+...|+
T Consensus 107 ~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 107 AVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred EecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 5664433332 35556655 7788 766 6889999999776 556666555555
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.03 E-value=0.00045 Score=70.11 Aligned_cols=92 Identities=20% Similarity=0.239 Sum_probs=62.7
Q ss_pred hhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhC----
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYG---- 158 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~g---- 158 (497)
...+..|+++||++|+|++|++- .|.. .++++.|-+.||-++.-+.....-.|-. .+
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~~------------~~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~~~ 95 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPPS------------PRFYDLCDELGILVWQEIPLEGHGSWQD--FGNCNY 95 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S--S------------HHHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCTSC
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccCc------------HHHHHHHhhcCCEEEEeccccccCcccc--CCcccc
Confidence 56889999999999999999843 2222 2677889999998887764322111210 01
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCC--cceEEEeecCc
Q 036937 159 GLLDCQVVKDYADYADFCFKTFGD--RVKNWYTFNEP 193 (497)
Q Consensus 159 gw~~~~~~~~f~~ya~~~~~~~~d--~V~~w~t~NEp 193 (497)
--.+++..+.+.+-++.+++++.. -|-.|.+.||+
T Consensus 96 ~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 96 DADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp TTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 013678888888888888999876 68899999997
No 24
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.69 E-value=0.00011 Score=77.90 Aligned_cols=109 Identities=20% Similarity=0.251 Sum_probs=80.0
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccC--C-CCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHh---CCC
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEG--T-GTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKY---GGL 160 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~--~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~---ggw 160 (497)
++|+..||+.|+|++|+-+.|-.+.+.. . .-.+...+...+++|+.+++.||.+++.||+..-+.--.+.. +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999855555532 1 223244556899999999999999999999876222111110 112
Q ss_pred C-ChhhHHHHHHHHHHHHHHhCC--cceEEEeecCchh
Q 036937 161 L-DCQVVKDYADYADFCFKTFGD--RVKNWYTFNEPRV 195 (497)
Q Consensus 161 ~-~~~~~~~f~~ya~~~~~~~~d--~V~~w~t~NEp~~ 195 (497)
. ..+.++.+.+-.+.++.+|++ .|-...++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 356679999999999999988 3444678899984
No 25
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.036 Score=55.46 Aligned_cols=249 Identities=18% Similarity=0.269 Sum_probs=138.6
Q ss_pred HHHHHHHHcCCCeeeecccccccc-ccCC----CCCChhhhHHHHHHHHHHHHcCCeeEEEec---cCCCcHHHHHHhCC
Q 036937 88 EDIDLMKNLNFDAYRFSISWSRIF-PEGT----GTVNQKGVDYYNRLIDYMLEQGITPYANLY---HYDMPLALQEKYGG 159 (497)
Q Consensus 88 eDi~l~~~lG~~~~R~si~W~ri~-P~~~----g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~~gg 159 (497)
+=++.||+.|||.+|+-| |-.=- -++. |.=|. +---++-++++.+||++++..| ||.=|.--.. .-.
T Consensus 67 D~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~---~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~k-Pka 141 (403)
T COG3867 67 DALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDL---KKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKK-PKA 141 (403)
T ss_pred HHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchH---HHHHHHHHHHHhcCcEEEeeccchhhccChhhcCC-cHH
Confidence 347999999999999965 21110 0111 22233 3345677888999999999998 4555643222 245
Q ss_pred CCC---hhhHHHHHHHHHHHHHHhC---CcceEEEeecCchhhhcccCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHH
Q 036937 160 LLD---CQVVKDYADYADFCFKTFG---DRVKNWYTFNEPRVIAALGFDDGSNPPSRCSKEVNNCTDGNSGTEPYIAAHN 233 (497)
Q Consensus 160 w~~---~~~~~~f~~ya~~~~~~~~---d~V~~w~t~NEp~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~hn 233 (497)
|.+ ++.....-+|.+.+...+. =....-.+=||-+- |+ .||-|... -+.-+-.
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~~--------------~f~k~a~ 200 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNG----GF---LWPDGEGR--------------NFDKMAA 200 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCC----ce---eccCCCCc--------------ChHHHHH
Confidence 654 2333455566776666664 45666677799652 22 25544321 1222334
Q ss_pred HHHHHHHHHHHHHHhhcCCCCceEEEEecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhhHHhhccCCCC
Q 036937 234 MILSHAAAVQRYREKYQETQKGNIGILLDFVWYEPHTRSKADNLAAQRARDFHIGWFLHPLTYGEYPRTMQENVGDRLPK 313 (497)
Q Consensus 234 ~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~d~~aa~~~~~~~~~~fldp~~~G~yP~~~~~~l~~~lp~ 313 (497)
++.+ +++++|+. .+..+|-+.+. .|..++ ..+|+.|-+.+
T Consensus 201 L~n~---g~~avrev---~p~ikv~lHla----~g~~n~-------------~y~~~fd~ltk----------------- 240 (403)
T COG3867 201 LLNA---GIRAVREV---SPTIKVALHLA----EGENNS-------------LYRWIFDELTK----------------- 240 (403)
T ss_pred HHHH---Hhhhhhhc---CCCceEEEEec----CCCCCc-------------hhhHHHHHHHH-----------------
Confidence 4444 45556664 35555544432 232222 12333333321
Q ss_pred CCHHHHhhhcCCcceEEeecCcceeeeCCCCCCCCCCCCCCCCCCcccccCCCCcCCCCCCCCCcccChHHHHHHHHHHH
Q 036937 314 FTPEEVLMVQGSFDYLGVNQYTSYYMFDPPWPKSNISSYANDWDAGYAYDRNGVPIGPRANSGWLYIVPWGLYNALMYVK 393 (497)
Q Consensus 314 ft~~e~~~ikg~~DflGiNyY~~~~v~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~w~~i~P~gl~~~l~~~~ 393 (497)
-.-..|.||++||.- +. | .-.-|...|..+.
T Consensus 241 --------~nvdfDVig~SyYpy--Wh-------------------------g--------------tl~nL~~nl~dia 271 (403)
T COG3867 241 --------RNVDFDVIGSSYYPY--WH-------------------------G--------------TLNNLTTNLNDIA 271 (403)
T ss_pred --------cCCCceEEeeecccc--cc-------------------------C--------------cHHHHHhHHHHHH
Confidence 123469999999941 11 0 0124777889999
Q ss_pred HHhCCCcEEEeecCCCCCCC------C--CcCc-----ccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeeccc
Q 036937 394 ERYGNPIVMLSENGMDDPSN------Y--TVNH-----LLHDTTRVNYYRDYISQLKKAVDDGANVTGYFAWSL 454 (497)
Q Consensus 394 ~rY~~~pI~ITENG~~~~~~------~--~~~g-----~i~D~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl 454 (497)
+||++ .+||.|.+.+..-| . +..+ .+.-.-+..++++-++.|..- -+.+=.|.|+|--
T Consensus 272 ~rY~K-~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv--p~~~GlGvFYWEp 342 (403)
T COG3867 272 SRYHK-DVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV--PKSNGLGVFYWEP 342 (403)
T ss_pred HHhcC-eEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC--CCCCceEEEEecc
Confidence 99986 59999988732211 0 0001 122234566777777666542 3455689999964
No 26
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.39 E-value=0.00025 Score=72.91 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=65.9
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec--------cCCCcHHHHHH
Q 036937 85 RYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY--------HYDMPLALQEK 156 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--------H~~~P~~l~~~ 156 (497)
.|++-++.||++|+|++-+-|.|...||.+ |++|+++..=.+++|+.++++||-+++-.= .-++|.||..+
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~ 103 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRK 103 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT-TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGS
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC-CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhcc
Confidence 588889999999999999999999999999 999999988899999999999998766432 24589999875
Q ss_pred hCCC---CChhhHHHHHHHHHHHHHHhCC
Q 036937 157 YGGL---LDCQVVKDYADYADFCFKTFGD 182 (497)
Q Consensus 157 ~ggw---~~~~~~~~f~~ya~~~~~~~~d 182 (497)
.+.. .++...+...+|.+.+++...+
T Consensus 104 ~~~~~R~~~~~~~~~~~~~~~~~~~~~~~ 132 (319)
T PF01301_consen 104 PDIRLRTNDPPFLEAVERWYRALAKIIKP 132 (319)
T ss_dssp TTS-SSSS-HHHHHHHHHHHHHHHHHHGG
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHh
Confidence 3332 2445556666666666655533
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.90 E-value=0.0014 Score=68.47 Aligned_cols=107 Identities=20% Similarity=0.332 Sum_probs=81.8
Q ss_pred hhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec-c-----------CCCc
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY-H-----------YDMP 150 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~P 150 (497)
+.-.+..++.||++||..+-+.+=|..+|+.+.+++|+ ..|+++++.+++.|++..+.|. | .-||
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydW---s~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP 91 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDW---SGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLP 91 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCc---HHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCC
Confidence 34788999999999999999999999999996699999 6699999999999999888763 3 4689
Q ss_pred HHHHHHh-----------C--------CCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCchh
Q 036937 151 LALQEKY-----------G--------GLLDCQVVKDYADYADFCFKTFGDRVKNWYTFNEPRV 195 (497)
Q Consensus 151 ~~l~~~~-----------g--------gw~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 195 (497)
.|+.+.. | .|....+++.+.+|-+-+.++|.+.. -|+-|..+
T Consensus 92 ~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~v 152 (402)
T PF01373_consen 92 SWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQV 152 (402)
T ss_dssp HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEEE
T ss_pred HHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEEe
Confidence 9997531 2 24444559999999999999997765 56666543
No 28
>PLN03059 beta-galactosidase; Provisional
Probab=96.81 E-value=0.0051 Score=69.81 Aligned_cols=95 Identities=12% Similarity=0.141 Sum_probs=77.2
Q ss_pred hchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEe--------ccCCCcHHHHH
Q 036937 84 HRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANL--------YHYDMPLALQE 155 (497)
Q Consensus 84 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL--------~H~~~P~~l~~ 155 (497)
..|++=|+.||.+|+|++-.=|.|..-||.+ |++|++|..=..++|+.+.+.||-+++-. -.-++|.||..
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~ 137 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKY 137 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC-CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhc
Confidence 4578889999999999999999999999998 99999999999999999999999877643 24678999975
Q ss_pred HhCCC----CChhhHHHHHHHHHHHHHHh
Q 036937 156 KYGGL----LDCQVVKDYADYADFCFKTF 180 (497)
Q Consensus 156 ~~ggw----~~~~~~~~f~~ya~~~~~~~ 180 (497)
. .|- .++.+.++-.+|.+.+++.+
T Consensus 138 ~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l 165 (840)
T PLN03059 138 V-PGIEFRTDNGPFKAAMQKFTEKIVDMM 165 (840)
T ss_pred C-CCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 3 332 25566666667777777666
No 29
>PLN02161 beta-amylase
Probab=96.58 E-value=0.01 Score=63.43 Aligned_cols=111 Identities=15% Similarity=0.222 Sum_probs=87.3
Q ss_pred CchhhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec-cC-----------
Q 036937 80 VDQYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY-HY----------- 147 (497)
Q Consensus 80 ~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H~----------- 147 (497)
..+..-.+..++.||.+||..+-+.+=|.-+|+++.+++|+ ..|+++++.+++.|++..+.|. |-
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~I 189 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKW---SLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGGI 189 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccCc
Confidence 46677789999999999999999999999999987799999 5699999999999999777665 32
Q ss_pred CCcHHHHHHh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCchh
Q 036937 148 DMPLALQEKY-----------GG----------------LLDCQVVKDYADYADFCFKTFGDRVKNWYTFNEPRV 195 (497)
Q Consensus 148 ~~P~~l~~~~-----------gg----------------w~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 195 (497)
-||.|+.+.- .| +..+.-++-+.+|-+-+.++|.+... -|+.|..+
T Consensus 190 pLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 190 SLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred cCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 4999987530 12 22233457888888888888877654 46777654
No 30
>PLN02803 beta-amylase
Probab=96.53 E-value=0.011 Score=63.57 Aligned_cols=108 Identities=17% Similarity=0.262 Sum_probs=84.6
Q ss_pred hhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec-c-----------CCCc
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY-H-----------YDMP 150 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~P 150 (497)
-.-.+..++.||++||..+-+.+=|.-+|+++.+++|+ ..|+++++.+++.|++..+.|. | .-||
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 182 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNW---EGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 34578899999999999999999999999987799999 5699999999999999777665 3 3599
Q ss_pred HHHHHHh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCchh
Q 036937 151 LALQEKY-----------GG----------------LLDCQVVKDYADYADFCFKTFGDRVKNWYTFNEPRV 195 (497)
Q Consensus 151 ~~l~~~~-----------gg----------------w~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 195 (497)
.|+.+.. .| +..+.-++-+.+|-+-+..+|.+... -|+.|..+
T Consensus 183 ~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 183 PWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 9987531 11 12334457788888888888877654 47777654
No 31
>PLN00197 beta-amylase; Provisional
Probab=96.43 E-value=0.014 Score=62.90 Aligned_cols=108 Identities=22% Similarity=0.299 Sum_probs=84.8
Q ss_pred hhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec-c-----------CCCc
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY-H-----------YDMP 150 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~P 150 (497)
-.-.+..++.||++||..+-+.+=|.-+|+++.+++|+ ..|+++++.+++.|++..+.|. | .-||
T Consensus 126 ~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdW---sgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP 202 (573)
T PLN00197 126 RKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNW---GGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLP 202 (573)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 34578899999999999999999999999987799999 5699999999999999777665 3 3599
Q ss_pred HHHHHHh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCchh
Q 036937 151 LALQEKY-----------GG----------------LLDCQVVKDYADYADFCFKTFGDRVKNWYTFNEPRV 195 (497)
Q Consensus 151 ~~l~~~~-----------gg----------------w~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 195 (497)
.|+.+.. .| +..+.-++-+.+|-+-+..+|.+... -|+.|..+
T Consensus 203 ~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 203 KWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 9987531 11 22233467888888888888877655 36777654
No 32
>PLN02801 beta-amylase
Probab=96.25 E-value=0.026 Score=60.39 Aligned_cols=110 Identities=15% Similarity=0.251 Sum_probs=83.3
Q ss_pred hhhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec-c-----------CCC
Q 036937 82 QYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY-H-----------YDM 149 (497)
Q Consensus 82 ~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H-----------~~~ 149 (497)
+-.-.+..++.||++||..+-+.+=|.-+|+++.+++|+ ..|+++++.+++.|++..+.|. | .-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdW---sgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpL 111 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDW---SAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPI 111 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccC
Confidence 344578899999999999999999999999987799999 5699999999999999766664 3 358
Q ss_pred cHHHHHHh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCchh
Q 036937 150 PLALQEKY-----------GG----------------LLDCQVVKDYADYADFCFKTFGDRVKNWYTFNEPRV 195 (497)
Q Consensus 150 P~~l~~~~-----------gg----------------w~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 195 (497)
|.|+.+.. .| +..+.-++.+.+|-+-+.++|.+...- -|+.|..+
T Consensus 112 P~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~-~~I~eI~V 183 (517)
T PLN02801 112 PQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFLEA-GVIIDIEV 183 (517)
T ss_pred CHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CeeEEEEE
Confidence 99988531 11 223344688888888888888775421 24555443
No 33
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.13 E-value=0.012 Score=61.46 Aligned_cols=101 Identities=22% Similarity=0.364 Sum_probs=56.3
Q ss_pred HHcCCCeeeecc---c------------ccccc--ccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHH
Q 036937 94 KNLNFDAYRFSI---S------------WSRIF--PEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEK 156 (497)
Q Consensus 94 ~~lG~~~~R~si---~------------W~ri~--P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 156 (497)
+.||++.+|+.| + |.|.+ +..+|.+|+.+=+-=+.++++++++|++-++ ++-+..|.|+...
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCCCCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 458999999877 3 33321 2223777776545556799999999999766 6667888877653
Q ss_pred h---CC-----CCChhhHHHHHHHHHHHHHHhCC---cceEEEeecCchh
Q 036937 157 Y---GG-----LLDCQVVKDYADYADFCFKTFGD---RVKNWYTFNEPRV 195 (497)
Q Consensus 157 ~---gg-----w~~~~~~~~f~~ya~~~~~~~~d---~V~~w~t~NEp~~ 195 (497)
. |+ =+.++..+.|+.|-..|+++|.. .+++-.++|||..
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 1 11 14567788999999999999933 7899999999983
No 34
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.10 E-value=0.03 Score=55.13 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEeecCCCCCCCCCcCcccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeeccccccc
Q 036937 383 WGLYNALMYVKERYGNPIVMLSENGMDDPSNYTVNHLLHDTTRVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNF 458 (497)
Q Consensus 383 ~gl~~~l~~~~~rY~~~pI~ITENG~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~ 458 (497)
.++...|..++++|+ +||.|||-|+.... ..-.++....||++-+..+. .---|.+|+..+.++..
T Consensus 151 ~~~~~~i~~~~~~~~-kPIWITEf~~~~~~-----~~~~~~~~~~fl~~~~~~ld----~~~~VeryawF~~~~~~ 216 (239)
T PF11790_consen 151 DDFKDYIDDLHNRYG-KPIWITEFGCWNGG-----SQGSDEQQASFLRQALPWLD----SQPYVERYAWFGFMNDG 216 (239)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEeecccCCC-----CCCCHHHHHHHHHHHHHHHh----cCCCeeEEEeccccccc
Confidence 468889999999998 58999999986521 12245666777766666554 44789999999954443
No 35
>PLN02905 beta-amylase
Probab=95.99 E-value=0.044 Score=59.86 Aligned_cols=112 Identities=17% Similarity=0.234 Sum_probs=84.3
Q ss_pred CchhhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec-c-----------C
Q 036937 80 VDQYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY-H-----------Y 147 (497)
Q Consensus 80 ~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H-----------~ 147 (497)
..+..-.+..++.||++||..+-+.+=|.-+|+++.+++|+ ..|+++++.+++.|++..+.|. | .
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdW---sgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~I 358 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNW---NGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVCI 358 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 35667788999999999999999999999999987799999 5699999999999999777665 3 2
Q ss_pred CCcHHHHHHh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCchh
Q 036937 148 DMPLALQEKY-----------GG----------------LLDCQVVKDYADYADFCFKTFGDRVKNWYTFNEPRV 195 (497)
Q Consensus 148 ~~P~~l~~~~-----------gg----------------w~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 195 (497)
-||.|+.+.- .| ...+.-++.+.+|-+-+.++|.+...- -|+.|..+
T Consensus 359 PLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~V 432 (702)
T PLN02905 359 PLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFED-GVISMVEV 432 (702)
T ss_pred cCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhcC-CceEEEEe
Confidence 5999987530 11 122445577888888877777664311 24555443
No 36
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=95.95 E-value=0.15 Score=51.82 Aligned_cols=89 Identities=18% Similarity=0.246 Sum_probs=49.6
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChh
Q 036937 85 RYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQ 164 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 164 (497)
-.+.||.+||+||+|++|+= .|-|.. . .+..+..|.+.||=+++.|. .|.--..+...|. .=
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY----~vdp~~---------n-Hd~CM~~~~~aGIYvi~Dl~---~p~~sI~r~~P~~-sw 115 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVY----SVDPSK---------N-HDECMSAFADAGIYVILDLN---TPNGSINRSDPAP-SW 115 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TTS------------HHHHHHHHHTT-EEEEES----BTTBS--TTS------
T ss_pred HHHHhHHHHHHcCCCEEEEE----EeCCCC---------C-HHHHHHHHHhCCCEEEEecC---CCCccccCCCCcC-CC
Confidence 67999999999999999973 233443 2 57889999999999999994 4522112211111 11
Q ss_pred hHHHHHHHHHHHHHHhCC--cceEEEeecC
Q 036937 165 VVKDYADYADFCFKTFGD--RVKNWYTFNE 192 (497)
Q Consensus 165 ~~~~f~~ya~~~~~~~~d--~V~~w~t~NE 192 (497)
....|.+|... ++.|.. -|--...=||
T Consensus 116 ~~~l~~~~~~v-id~fa~Y~N~LgFf~GNE 144 (314)
T PF03198_consen 116 NTDLLDRYFAV-IDAFAKYDNTLGFFAGNE 144 (314)
T ss_dssp -HHHHHHHHHH-HHHHTT-TTEEEEEEEES
T ss_pred CHHHHHHHHHH-HHHhccCCceEEEEecce
Confidence 23445555444 355544 3445555566
No 37
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=95.95 E-value=0.042 Score=55.75 Aligned_cols=103 Identities=16% Similarity=0.206 Sum_probs=63.6
Q ss_pred hHHHHHHHHHcCCCeeeecc--ccccc-c----ccC-----C------CCCChhhhHHHHHHHHHHHHcCCeeEEEeccC
Q 036937 86 YKEDIDLMKNLNFDAYRFSI--SWSRI-F----PEG-----T------GTVNQKGVDYYNRLIDYMLEQGITPYANLYHY 147 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si--~W~ri-~----P~~-----~------g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~ 147 (497)
++.-++..|+-|+|.+|+.+ .|... . |.. + .++|++=.++.+++|+.|.++||+|.+.+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 34457889999999999998 44433 1 111 0 1378989999999999999999999877765
Q ss_pred CCcHHHHHHhCCCCC---hhhHHHHHHHHHHHHHHhCCc-ceEEEeecCc
Q 036937 148 DMPLALQEKYGGLLD---CQVVKDYADYADFCFKTFGDR-VKNWYTFNEP 193 (497)
Q Consensus 148 ~~P~~l~~~~ggw~~---~~~~~~f~~ya~~~~~~~~d~-V~~w~t~NEp 193 (497)
+.| ..+ +.|.. .-..+.-.+|.+.|++||+.. =-.|++-||-
T Consensus 111 g~~---~~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCP---YVP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---HH--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCc---ccc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 222 122 44432 333677788999999999998 4789999995
No 38
>PLN02705 beta-amylase
Probab=95.83 E-value=0.038 Score=60.13 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=82.7
Q ss_pred chhhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec-c-----------CC
Q 036937 81 DQYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY-H-----------YD 148 (497)
Q Consensus 81 d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-H-----------~~ 148 (497)
.+-.-.+..++.||++||..+-+.+=|..+|+++.+++|+ ..|+++++.+++.|++..+.|. | .-
T Consensus 265 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdW---sgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IP 341 (681)
T PLN02705 265 VDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVW---SGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMIS 341 (681)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCc---HHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCccccc
Confidence 3445678899999999999999999999999987799999 5699999999999999777664 3 25
Q ss_pred CcHHHHHHh-----------CC----------------CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCchh
Q 036937 149 MPLALQEKY-----------GG----------------LLDCQVVKDYADYADFCFKTFGDRVKNWYTFNEPRV 195 (497)
Q Consensus 149 ~P~~l~~~~-----------gg----------------w~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 195 (497)
||.|+.+.- .| ...+.-++.+.+|.+-+.++|.+...- -|+.|..+
T Consensus 342 LP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~~-g~I~eI~V 414 (681)
T PLN02705 342 LPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLFVE-GLITAVEI 414 (681)
T ss_pred CCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhccC-CceeEEEe
Confidence 999988530 11 122344578888888888888664311 24555443
No 39
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.25 E-value=0.18 Score=55.68 Aligned_cols=95 Identities=12% Similarity=0.133 Sum_probs=77.1
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEe--------ccCCCcHHHHHH
Q 036937 85 RYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANL--------YHYDMPLALQEK 156 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL--------~H~~~P~~l~~~ 156 (497)
.|++=|+.+|++|+|++..=+.|.--+|.+ |++|++|.-=..++|..+.++|+=+++-+ .|-++|.||...
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~ 128 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRNV 128 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC-CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhhC
Confidence 477789999999999999999999999999 99999998777889999999998644422 267789888765
Q ss_pred hCCC---CChhhHHHHHHHHHHHHHHh
Q 036937 157 YGGL---LDCQVVKDYADYADFCFKTF 180 (497)
Q Consensus 157 ~ggw---~~~~~~~~f~~ya~~~~~~~ 180 (497)
-|.- .|+.+..++.+|.+.++...
T Consensus 129 pg~~~Rt~nepfk~~~~~~~~~iv~~m 155 (649)
T KOG0496|consen 129 PGIVFRTDNEPFKAEMERWTTKIVPMM 155 (649)
T ss_pred CceEEecCChHHHHHHHHHHHHHHHHH
Confidence 2221 36778888899999888744
No 40
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=93.85 E-value=0.4 Score=44.66 Aligned_cols=102 Identities=21% Similarity=0.397 Sum_probs=64.9
Q ss_pred hchHHHHHHHHHcCCCeeeeccccccc-----cccCC--CCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHH
Q 036937 84 HRYKEDIDLMKNLNFDAYRFSISWSRI-----FPEGT--GTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEK 156 (497)
Q Consensus 84 ~ry~eDi~l~~~lG~~~~R~si~W~ri-----~P~~~--g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~ 156 (497)
.+|+++++.|+++|++.+=+- |+.. .|..- +.+.....+....+++++.++||+++|.|+. -|.|...
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~- 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ- 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc-
Confidence 479999999999999998432 4333 22210 1233344577899999999999999999974 3455542
Q ss_pred hCCCCChh-hHHHHHHHHHHHHHHhCC--cceEEEeecCch
Q 036937 157 YGGLLDCQ-VVKDYADYADFCFKTFGD--RVKNWYTFNEPR 194 (497)
Q Consensus 157 ~ggw~~~~-~~~~f~~ya~~~~~~~~d--~V~~w~t~NEp~ 194 (497)
.+.+ -++.=..-++.+.++||. .+.-|-.-.|+.
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1221 222223355666677766 356666666654
No 41
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=91.69 E-value=0.59 Score=55.53 Aligned_cols=91 Identities=20% Similarity=0.175 Sum_probs=63.7
Q ss_pred hhhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec---cCCCcHHHHHHhC
Q 036937 82 QYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY---HYDMPLALQEKYG 158 (497)
Q Consensus 82 ~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---H~~~P~~l~~~~g 158 (497)
....+++||++||++|+|++|+| -.|.. + ++.+.|-+.||=++--.. |.-.|. . .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-----p-------~fydlcDe~GilV~dE~~~e~hg~~~~---~--~ 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH-----P-------LWYELCDRYGLYVVDEANIETHGMVPM---N--R 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-----H-------HHHHHHHHcCCEEEEecCccccCCccc---c--C
Confidence 45678999999999999999995 23322 2 556888899997765542 211110 0 0
Q ss_pred CCCChhhHHHHHHHHHHHHHHhCC--cceEEEeecCch
Q 036937 159 GLLDCQVVKDYADYADFCFKTFGD--RVKNWYTFNEPR 194 (497)
Q Consensus 159 gw~~~~~~~~f~~ya~~~~~~~~d--~V~~w~t~NEp~ 194 (497)
...+++..+.+.+=++.+++|.+. -|-.|...||+.
T Consensus 427 ~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 113466777777778888999877 588999999974
No 42
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=91.34 E-value=0.08 Score=56.24 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=80.7
Q ss_pred hHHHHHHHHHcCCCeeeecccc-ccccccCCCCCChhh-hHHHHHHHHHHHHcCCeeEEEec----cCCCcHHHHHHhC-
Q 036937 86 YKEDIDLMKNLNFDAYRFSISW-SRIFPEGTGTVNQKG-VDYYNRLIDYMLEQGITPYANLY----HYDMPLALQEKYG- 158 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W-~ri~P~~~g~~n~~~-l~~y~~~i~~l~~~gi~p~vtL~----H~~~P~~l~~~~g- 158 (497)
-+.|++.|+.+|++..|++|-= ..+--. .|..|.+. +.+.+.+++.+...+|+.++||. |+.--.|...--|
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc~d~-~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag~ 106 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDCRDK-EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAGE 106 (587)
T ss_pred hhcccccccCccceeEEEEEecCcchhhh-hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCCC
Confidence 4578999999999999999633 333222 38888877 89999999999999999999987 3332222211001
Q ss_pred -----CCCChhhHHHHHHHHHHHHHHhCC--cceEEEeecCchh
Q 036937 159 -----GLLDCQVVKDYADYADFCFKTFGD--RVKNWYTFNEPRV 195 (497)
Q Consensus 159 -----gw~~~~~~~~f~~ya~~~~~~~~d--~V~~w~t~NEp~~ 195 (497)
-...+.+..-|.+|++.+++.|+. .+--|+.-|||.+
T Consensus 107 ~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 107 QSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 234677778999999999998877 4577999999765
No 43
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=90.54 E-value=0.86 Score=54.18 Aligned_cols=89 Identities=24% Similarity=0.248 Sum_probs=62.3
Q ss_pred hhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec---c-CCCcHHHHHHhC
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY---H-YDMPLALQEKYG 158 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---H-~~~P~~l~~~~g 158 (497)
...+++||++||++|+|++|+|. .|.. + .+.+.|-+.||=++--.. | |.....+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~sH-----yP~~-----~-------~fydlcDe~GllV~dE~~~e~~g~~~~~~~----- 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTAH-----YPND-----P-------RFYELCDIYGLFVMAETDVESHGFANVGDI----- 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEecC-----CCCC-----H-------HHHHHHHHCCCEEEECCcccccCccccccc-----
Confidence 56889999999999999999962 4443 1 667889999997665431 1 1111000
Q ss_pred CC--CChhhHHHHHHHHHHHHHHhCC--cceEEEeecCc
Q 036937 159 GL--LDCQVVKDYADYADFCFKTFGD--RVKNWYTFNEP 193 (497)
Q Consensus 159 gw--~~~~~~~~f~~ya~~~~~~~~d--~V~~w~t~NEp 193 (497)
.+ .+++..+.|.+=++.+++|.+. -|-.|..-||.
T Consensus 412 ~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 412 SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 01 2355666777778889999977 57899999996
No 44
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=87.94 E-value=2.5 Score=48.84 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=65.9
Q ss_pred CchhhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCC
Q 036937 80 VDQYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGG 159 (497)
Q Consensus 80 ~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 159 (497)
+-.+..+.+|+++||++|+|++|.| =.|.. ..+.+.|-+.||=++=-..+ +- ++.
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~------------~~~ydLcDelGllV~~Ea~~-----~~---~~~ 371 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS------------EEFYDLCDELGLLVIDEAMI-----ET---HGM 371 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC------------HHHHHHHHHhCcEEEEecch-----hh---cCC
Confidence 4456679999999999999999998 34443 25667788889966554432 21 144
Q ss_pred CCChhhHHHHHHHHHHHHHHhCC--cceEEEeecCch
Q 036937 160 LLDCQVVKDYADYADFCFKTFGD--RVKNWYTFNEPR 194 (497)
Q Consensus 160 w~~~~~~~~f~~ya~~~~~~~~d--~V~~w~t~NEp~ 194 (497)
..+++..+....=++..++|-+. -|-.|..=||.+
T Consensus 372 ~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 372 PDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred CCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 45667777777778888888866 588899999965
No 45
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=87.45 E-value=0.8 Score=48.04 Aligned_cols=99 Identities=15% Similarity=0.206 Sum_probs=71.6
Q ss_pred HHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCC-Ch-hhHHHHH
Q 036937 93 MKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLL-DC-QVVKDYA 170 (497)
Q Consensus 93 ~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~-~~-~~~~~f~ 170 (497)
-+|+||+-+|.---|.-++.. =-+++ .++++++|.+.+.|+.-+.+-.||+.+.-....+.+=. .+ ...+.++
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~--~~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl~~ 88 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK--LFYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDLIA 88 (428)
T ss_pred hhhhceeeehhcceeeeeecc--ccCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHHHH
Confidence 468999999999889844333 24566 88999999999999555556678887765554333322 22 4679999
Q ss_pred HHHHHHHHHhCCc---ceEEEeecCchhh
Q 036937 171 DYADFCFKTFGDR---VKNWYTFNEPRVI 196 (497)
Q Consensus 171 ~ya~~~~~~~~d~---V~~w~t~NEp~~~ 196 (497)
.|+..|+.++|-+ .-....+||||..
T Consensus 89 ~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 89 AFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHhChhheeecceeecCCCCcc
Confidence 9999999999862 3344567999865
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=86.40 E-value=1.7 Score=40.32 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=45.0
Q ss_pred hhhchHHHHHHHHHcCCCeeeeccccccccc--cCCC-------CCC--hhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 82 QYHRYKEDIDLMKNLNFDAYRFSISWSRIFP--EGTG-------TVN--QKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 82 ~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P--~~~g-------~~n--~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
.+....+-++-+++||++++-++--+..... ...| .++ .-..+-++++|++|+++||++|+.+.
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 3555677788999999999988765554431 1101 122 22345689999999999999999884
No 47
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=81.80 E-value=9.6 Score=38.79 Aligned_cols=87 Identities=24% Similarity=0.379 Sum_probs=62.4
Q ss_pred hhchHHHHHHHHHcCCCeeeecc---ccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCC
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSI---SWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGG 159 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si---~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~gg 159 (497)
..||.+--++++++|||.+-+.= .-.. +..+-|+-+.++-+.++.+||++.+++. |.-|.-+ ||
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~--------Lt~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----gg 122 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKL--------LTPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----GG 122 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGG--------GSTTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----TS
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhh--------cCHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----CC
Confidence 46899999999999999987532 2222 2233456678999999999999999996 7778654 44
Q ss_pred -----CCChhhHHHHHHHHHHHHHHhCC
Q 036937 160 -----LLDCQVVKDYADYADFCFKTFGD 182 (497)
Q Consensus 160 -----w~~~~~~~~f~~ya~~~~~~~~d 182 (497)
-++++++.+|.+=++.+.++.-|
T Consensus 123 L~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 123 LPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp -S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 57899999999999999988766
No 48
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=76.18 E-value=4.3 Score=41.66 Aligned_cols=82 Identities=21% Similarity=0.364 Sum_probs=40.2
Q ss_pred HHHHHHHHHHH--hCCCcEEEeecCCCCCCCCCcCcccCChhHHHHHHHHHHHHHHHHHcCCCEE-----EEeecccccc
Q 036937 385 LYNALMYVKER--YGNPIVMLSENGMDDPSNYTVNHLLHDTTRVNYYRDYISQLKKAVDDGANVT-----GYFAWSLLDN 457 (497)
Q Consensus 385 l~~~l~~~~~r--Y~~~pI~ITENG~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~~Gv~V~-----GY~~WSl~Dn 457 (497)
+.+.+...-++ ++++||+|||+|++..++. ...+ .==+.+.+.+.+.+.+|.+.+ -+|+-+++|-
T Consensus 212 ~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~--~a~~------~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~FdE 283 (310)
T PF00332_consen 212 MVDAVYAAMEKLGFPNVPVVVGETGWPSAGDP--GATP------ENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAFDE 283 (310)
T ss_dssp HHHHHHHHHHTTT-TT--EEEEEE---SSSST--TCSH------HHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB--
T ss_pred HHHHHHHHHHHhCCCCceeEEeccccccCCCC--CCCc------chhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEecC
Confidence 44445555454 4567899999999987531 0011 111344455555555665543 4777888876
Q ss_pred cccCCC--CCCccceEEEcC
Q 036937 458 FEWLLG--YSSRFGITYVDF 475 (497)
Q Consensus 458 ~EW~~G--y~~RfGL~~VD~ 475 (497)
.|..| .+..|||++-|.
T Consensus 284 -~~K~~~~~E~~wGlf~~d~ 302 (310)
T PF00332_consen 284 -NWKPGPEVERHWGLFYPDG 302 (310)
T ss_dssp -TTSSSSGGGGG--SB-TTS
T ss_pred -cCCCCCcccceeeeECCCC
Confidence 67666 477899998654
No 49
>PLN02361 alpha-amylase
Probab=76.11 E-value=7.6 Score=41.33 Aligned_cols=65 Identities=14% Similarity=0.222 Sum_probs=47.6
Q ss_pred chhhchHHHHHHHHHcCCCeeeeccccccccccCCC-----CCCh--hhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 81 DQYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTG-----TVNQ--KGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 81 d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g-----~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
.+|....+-++-|++||++++=++=...-.-+.|-. .+|. -..+=++++|++|+++||++|+.+.
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V 97 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIV 97 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEc
Confidence 488999999999999999999887655433333210 1121 1235589999999999999999764
No 50
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=75.28 E-value=7.9 Score=38.11 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCeeEEEeccC--------------CCcHHHHHH----------------h-CC---CCChhh---H
Q 036937 124 DYYNRLIDYMLEQGITPYANLYHY--------------DMPLALQEK----------------Y-GG---LLDCQV---V 166 (497)
Q Consensus 124 ~~y~~~i~~l~~~gi~p~vtL~H~--------------~~P~~l~~~----------------~-gg---w~~~~~---~ 166 (497)
+.++.+|+.-+++|..+|+||-=- ..|.|-..+ . +. ..+|+. .
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 678999999999999999999521 112111100 0 01 123431 1
Q ss_pred HHHHHHHHHHHHHhCCc-----ceEEEeecCchhhh
Q 036937 167 KDYADYADFCFKTFGDR-----VKNWYTFNEPRVIA 197 (497)
Q Consensus 167 ~~f~~ya~~~~~~~~d~-----V~~w~t~NEp~~~~ 197 (497)
.+-.+++..+..+||.. |++|..-|||.+..
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~ 139 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLWH 139 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGHH
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhhc
Confidence 24455677888888775 99999999999753
No 51
>PRK12313 glycogen branching enzyme; Provisional
Probab=72.46 E-value=14 Score=41.71 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=58.7
Q ss_pred hhchHHH-HHHHHHcCCCeeeeccc--------cc-------cccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec-
Q 036937 83 YHRYKED-IDLMKNLNFDAYRFSIS--------WS-------RIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY- 145 (497)
Q Consensus 83 y~ry~eD-i~l~~~lG~~~~R~si~--------W~-------ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~- 145 (497)
|.-..+. |+-+|+||++++=+.=- |. .|.|.- |. .+=++++|++|+++||++|+.+.
T Consensus 169 ~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-Gt-----~~d~k~lv~~~H~~Gi~VilD~V~ 242 (633)
T PRK12313 169 YRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-GT-----PEDFMYLVDALHQNGIGVILDWVP 242 (633)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 4445567 48999999999975432 21 122221 33 34588999999999999999864
Q ss_pred -cCCCcH----HHH--------H---H-hCC-------CCChhhHHHHHHHHHHHHHHhC
Q 036937 146 -HYDMPL----ALQ--------E---K-YGG-------LLDCQVVKDYADYADFCFKTFG 181 (497)
Q Consensus 146 -H~~~P~----~l~--------~---~-~gg-------w~~~~~~~~f~~ya~~~~~~~~ 181 (497)
|..... ++. + . +.. +.++++.+.+.+-++.-+++|+
T Consensus 243 nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 243 GHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 543110 110 0 0 012 3467888888888888887774
No 52
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=72.29 E-value=22 Score=35.80 Aligned_cols=119 Identities=16% Similarity=0.185 Sum_probs=70.6
Q ss_pred CccceeeccCCCcccCCCCCCCCCchhhchHHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHH
Q 036937 57 PCIWDVYAHTPGHIANNATADVTVDQYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLE 135 (497)
Q Consensus 57 ~s~Wd~~~~~~~~~~~~~~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~ 135 (497)
.+.|+-|....+. ..+..+.-.+..+++-|+..+++|+..+=+.--|+.-.+... .-.....-....++++-.++
T Consensus 9 k~~W~Ww~~~~~~----~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~ 84 (273)
T PF10566_consen 9 KAAWSWWSMHNGK----GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKE 84 (273)
T ss_dssp EEEECTCCCCTTS----SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHH
T ss_pred eEEEeecccCCCC----CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHH
Confidence 4667666543221 112234456888999999999999999999999997332221 00001111346799999999
Q ss_pred cCCeeEEEeccCC------CcHHHHH---Hh---C------CC---CChhhHHHHHHHHHHHHHH
Q 036937 136 QGITPYANLYHYD------MPLALQE---KY---G------GL---LDCQVVKDYADYADFCFKT 179 (497)
Q Consensus 136 ~gi~p~vtL~H~~------~P~~l~~---~~---g------gw---~~~~~~~~f~~ya~~~~~~ 179 (497)
+|+.+++-.+|-+ +=..+.+ .| | +| .+.+.++.+.+-++.++++
T Consensus 85 KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 85 KGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp TT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999998766 2111111 11 1 22 4567778888888887654
No 53
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=71.61 E-value=17 Score=32.47 Aligned_cols=56 Identities=18% Similarity=0.206 Sum_probs=37.9
Q ss_pred HHHHHHHcCCCeeeeccc--ccc-ccccCCC--CCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 89 DIDLMKNLNFDAYRFSIS--WSR-IFPEGTG--TVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 89 Di~l~~~lG~~~~R~si~--W~r-i~P~~~g--~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
=++.||++|+|++-+... +-- ..|...| ....+ -+...++|++|+++||++++=+-
T Consensus 5 ~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 5 FVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred HHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEe
Confidence 368899999999999443 111 1233222 12222 37789999999999999988664
No 54
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=70.76 E-value=17 Score=40.23 Aligned_cols=57 Identities=16% Similarity=0.223 Sum_probs=40.1
Q ss_pred hhchHHHHHHHHHcCCCeeeeccc--------c-------ccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSIS--------W-------SRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si~--------W-------~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
+.-..+-++-+|+||++++-+.=- | -.+.|.- |. .+=+++||++|+++||++|+.+.
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G~-----~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-GG-----PDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEEc
Confidence 445566789999999999976421 2 1111111 33 34588999999999999999865
No 55
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=69.31 E-value=11 Score=37.19 Aligned_cols=57 Identities=23% Similarity=0.417 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCC-C-------CC--ChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGT-G-------TV--NQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g-------~~--n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
.+-|+-+|+|||+++-++=-+. .|... | .+ ..-..+=+++||++|+++||++|+.+.
T Consensus 7 ~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 7 IDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 4568899999999999885444 11111 1 11 223456689999999999999999885
No 56
>PRK05402 glycogen branching enzyme; Provisional
Probab=68.99 E-value=25 Score=40.46 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=58.0
Q ss_pred hhchHHHH-HHHHHcCCCeeeeccc--------cc-------cccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec-
Q 036937 83 YHRYKEDI-DLMKNLNFDAYRFSIS--------WS-------RIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY- 145 (497)
Q Consensus 83 y~ry~eDi-~l~~~lG~~~~R~si~--------W~-------ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~- 145 (497)
|.-..+.+ .-+|+||++++=+.=- |. .|.|.- |. .+=++++|++|+++||++|+.+.
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-Gt-----~~dfk~lV~~~H~~Gi~VilD~V~ 337 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-GT-----PDDFRYFVDACHQAGIGVILDWVP 337 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-CC-----HHHHHHHHHHHHHCCCEEEEEECC
Confidence 33344553 7789999999976542 21 122221 33 34588999999999999999864
Q ss_pred -cCCCc-----------HHHHH-----HhC-------CCCChhhHHHHHHHHHHHHHHhC
Q 036937 146 -HYDMP-----------LALQE-----KYG-------GLLDCQVVKDYADYADFCFKTFG 181 (497)
Q Consensus 146 -H~~~P-----------~~l~~-----~~g-------gw~~~~~~~~f~~ya~~~~~~~~ 181 (497)
|.... .+... .+. .+.++++.+.+.+-++.-+++|+
T Consensus 338 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 338 AHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 54221 11110 011 23467888888888888887774
No 57
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=68.62 E-value=34 Score=35.42 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=65.3
Q ss_pred CCCCCCchhhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHH
Q 036937 75 TADVTVDQYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQ 154 (497)
Q Consensus 75 ~~~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~ 154 (497)
.+-+|.=|++ |+--+..+ +.|+..+|+. + |.+-. -+..+.+++.++++|+..=+..+|-.++.-+.
T Consensus 73 iPlVADIHFd-~~lAl~a~-~~g~dkiRIN---------P-GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~ 138 (346)
T TIGR00612 73 VPLVADIHFD-YRLAALAM-AKGVAKVRIN---------P-GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRLL 138 (346)
T ss_pred CCEEEeeCCC-cHHHHHHH-HhccCeEEEC---------C-CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHH
Confidence 3445555665 45544444 4599999863 4 54432 26788999999999999999999999999999
Q ss_pred HHhCCCCChhhHHHHHHHHHHH
Q 036937 155 EKYGGLLDCQVVKDYADYADFC 176 (497)
Q Consensus 155 ~~~ggw~~~~~~~~f~~ya~~~ 176 (497)
++||+-+.+..++--.++++.+
T Consensus 139 ~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 139 EKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HHcCCCCHHHHHHHHHHHHHHH
Confidence 9987666666777777777765
No 58
>PLN00196 alpha-amylase; Provisional
Probab=67.65 E-value=12 Score=40.12 Aligned_cols=64 Identities=11% Similarity=0.122 Sum_probs=45.8
Q ss_pred hhhchHHHHHHHHHcCCCeeeeccccccccccCC-----CCCC---hhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 82 QYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGT-----GTVN---QKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 82 ~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~-----g~~n---~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
+|....+.+.-+++|||+++=++=......+.|- -.+| .-..+=+++||++++++||++|+...
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV 113 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIV 113 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 5677889999999999999998865543322221 1122 11234589999999999999999763
No 59
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=66.88 E-value=15 Score=37.16 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhh
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQV 165 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 165 (497)
..|++++++.|++.++++++=|...-... +.--.+.++-..++++.+++.|+++.+++-+|+-|- +..
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~-----------r~~ 145 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM-----------RDS 145 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------cCC
Confidence 56899999999999999986554443321 444567888899999999999999999998776653 122
Q ss_pred HHHHHHHHHHHHH
Q 036937 166 VKDYADYADFCFK 178 (497)
Q Consensus 166 ~~~f~~ya~~~~~ 178 (497)
++.+.++++.+.+
T Consensus 146 ~~~~~~~~~~~~~ 158 (280)
T cd07945 146 PDYVFQLVDFLSD 158 (280)
T ss_pred HHHHHHHHHHHHH
Confidence 4566777777654
No 60
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=66.14 E-value=11 Score=40.85 Aligned_cols=65 Identities=22% Similarity=0.239 Sum_probs=44.6
Q ss_pred chhhchHHHHHHHHHcCCCeeeeccccccc--------cccCC---------CCCChh--hhHHHHHHHHHHHHcCCeeE
Q 036937 81 DQYHRYKEDIDLMKNLNFDAYRFSISWSRI--------FPEGT---------GTVNQK--GVDYYNRLIDYMLEQGITPY 141 (497)
Q Consensus 81 d~y~ry~eDi~l~~~lG~~~~R~si~W~ri--------~P~~~---------g~~n~~--~l~~y~~~i~~l~~~gi~p~ 141 (497)
+.|.-..+-++-+++||++++=++=...-. .|..- |.+|.. ..+=+++||++|+++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 456556788999999999999877644322 11100 012221 34558999999999999999
Q ss_pred EEec
Q 036937 142 ANLY 145 (497)
Q Consensus 142 vtL~ 145 (497)
+.+.
T Consensus 99 ~D~V 102 (479)
T PRK09441 99 ADVV 102 (479)
T ss_pred EEEC
Confidence 9875
No 61
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=65.90 E-value=17 Score=35.60 Aligned_cols=79 Identities=13% Similarity=-0.011 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhh
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQV 165 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 165 (497)
+++++++++.|++.+|++++-+.+.-... +.=....++...+.++.+++.|+++.+.+....-| ...
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~~ 144 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KTD 144 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CCC
Confidence 89999999999999999998774211110 11122345677899999999999999999654443 133
Q ss_pred HHHHHHHHHHHH
Q 036937 166 VKDYADYADFCF 177 (497)
Q Consensus 166 ~~~f~~ya~~~~ 177 (497)
.+.+.++++.+.
T Consensus 145 ~~~l~~~~~~~~ 156 (265)
T cd03174 145 PEYVLEVAKALE 156 (265)
T ss_pred HHHHHHHHHHHH
Confidence 455566666654
No 62
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=65.41 E-value=17 Score=37.98 Aligned_cols=93 Identities=10% Similarity=0.208 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccC---CCCCChhhhHHHHHHHHHHHHcCCeeE-EEeccCCCcHHHHHHhCCCCC
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEG---TGTVNQKGVDYYNRLIDYMLEQGITPY-ANLYHYDMPLALQEKYGGLLD 162 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~ 162 (497)
+|.++.|+++|++.+-+++ .-+-++- -|+.. ..+-..+.|+.+++.|+..+ +.| =+++|.
T Consensus 99 ~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dl-i~GlPg----------- 162 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDL-MFGLPN----------- 162 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEe-ecCCCC-----------
Confidence 5789999999999555555 3333321 13221 23557789999999999744 454 356663
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEeecCchhh
Q 036937 163 CQVVKDYADYADFCFKTFGDRVKNWYTFNEPRVI 196 (497)
Q Consensus 163 ~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 196 (497)
++.+.|.+-.+.+.+.=-+.|..+...-+|+..
T Consensus 163 -qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~ 195 (374)
T PRK05799 163 -QTLEDWKETLEKVVELNPEHISCYSLIIEEGTP 195 (374)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCH
Confidence 234455555555543222455555544577643
No 63
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=64.44 E-value=11 Score=41.78 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=41.2
Q ss_pred hhchHHHHHHHHHcCCCeeeecccccccccc-CC-----CCCC--hhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSISWSRIFPE-GT-----GTVN--QKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~-~~-----g~~n--~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
+.-..+-++-+++||++++=++=-...-.-. +- -.+| .-..+=++.+|++++++||++|+.+.
T Consensus 26 ~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 26 LRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred HHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 4445677899999999999765432211100 00 0111 12345688999999999999999874
No 64
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=64.38 E-value=18 Score=37.96 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=47.8
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
-++|++++.+.|++.+|++++-|.+.-... +.-..+.++-..+.++.+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 489999999999999999888776644321 333455678888999999999999888874
No 65
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=61.36 E-value=13 Score=41.16 Aligned_cols=61 Identities=16% Similarity=0.344 Sum_probs=42.2
Q ss_pred hhchHHHHHHHHHcCCCeeeeccccccccccCC-C-------CCC--hhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGT-G-------TVN--QKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g-------~~n--~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
+.-..+.++-+++|||+++=++=-+.. |... | .+| ....+-+++||++++++||++|+.+.
T Consensus 32 l~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 32 LRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred HHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 445668899999999999977653321 1110 1 111 12345689999999999999999875
No 66
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=61.29 E-value=13 Score=37.10 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
.+|++++.+.|++.+|+.++=|...-... +.=-.+.++...+++..++++|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 67999999999999999886554433321 333356788899999999999999999884
No 67
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=61.23 E-value=48 Score=37.33 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=58.9
Q ss_pred hhchHHHH-HHHHHcCCCeeeec-ccccc--------------ccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec-
Q 036937 83 YHRYKEDI-DLMKNLNFDAYRFS-ISWSR--------------IFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY- 145 (497)
Q Consensus 83 y~ry~eDi-~l~~~lG~~~~R~s-i~W~r--------------i~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~- 145 (497)
|.-..+.+ +-+|+||++++=+. |..+. +.|.- |. .+=+++||++|+++||++|+.+.
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~-Gt-----~~dlk~lV~~~H~~Gi~VilD~V~ 228 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF-GT-----PDDFMYFVDACHQAGIGVILDWVP 228 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 44445564 88999999999873 32221 11111 22 34488999999999999999865
Q ss_pred -cCCC-----------cHHHHH-----HhCC-------CCChhhHHHHHHHHHHHHHHhC
Q 036937 146 -HYDM-----------PLALQE-----KYGG-------LLDCQVVKDYADYADFCFKTFG 181 (497)
Q Consensus 146 -H~~~-----------P~~l~~-----~~gg-------w~~~~~~~~f~~ya~~~~~~~~ 181 (497)
|... |.+... .+.. +.++++.+.+.+-++..+++|+
T Consensus 229 NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 229 GHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 5321 111110 0011 2467888888888888888874
No 68
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=61.19 E-value=30 Score=34.74 Aligned_cols=53 Identities=13% Similarity=0.276 Sum_probs=41.0
Q ss_pred CCCCchhhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 77 DVTVDQYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 77 ~~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
+-.|..-..|.-|+++++.-+. .+|.= | -|... ..++..++.+.|++.++.++
T Consensus 56 dGtCKSa~~~~sDLe~l~~~t~-~IR~Y-----------~-sDCn~---le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 56 DGTCKSADQVASDLELLASYTH-SIRTY-----------G-SDCNT---LENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCcCHHHHHhHHHHhccCCc-eEEEe-----------e-ccchh---hhhhHHHHHhcCceEEEEEe
Confidence 4478888999999999999886 55531 2 34433 45899999999999999994
No 69
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=60.93 E-value=12 Score=37.20 Aligned_cols=58 Identities=24% Similarity=0.227 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEe
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANL 144 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 144 (497)
.+|++++.+.|++.+|+.++.|.+.-... +.-..+.++-..++++.+++.|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 78999999999999999998876643321 33345678889999999999999877665
No 70
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=60.24 E-value=44 Score=34.23 Aligned_cols=98 Identities=20% Similarity=0.175 Sum_probs=63.9
Q ss_pred hhchHHHHHHHHHcCCCeeeecccc-------ccccccCC---CC--CChhhhHHHHHHHHHHHHcCCeeEEEe-cc---
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSISW-------SRIFPEGT---GT--VNQKGVDYYNRLIDYMLEQGITPYANL-YH--- 146 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si~W-------~ri~P~~~---g~--~n~~~l~~y~~~i~~l~~~gi~p~vtL-~H--- 146 (497)
-...++=++.|+++|+|++=+.+.+ |.++|... |. .+ .|.+.+..+|++++++||++..-+ +.
T Consensus 18 ~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~-pg~DpL~~~I~eaHkrGlevHAW~~~~~~~ 96 (311)
T PF02638_consen 18 KEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKD-PGFDPLEFMIEEAHKRGLEVHAWFRVGFNA 96 (311)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCC-CCccHHHHHHHHHHHcCCEEEEEEEeecCC
Confidence 3456778999999999998665533 34444221 11 11 144668899999999999987544 11
Q ss_pred -------CCCcHHHHHHh-----------C--CCC---ChhhHHHHHHHHHHHHHHhC
Q 036937 147 -------YDMPLALQEKY-----------G--GLL---DCQVVKDYADYADFCFKTFG 181 (497)
Q Consensus 147 -------~~~P~~l~~~~-----------g--gw~---~~~~~~~f~~ya~~~~~~~~ 181 (497)
-..|.|+.... + .|+ +|++.+...+-++.++++|.
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred CchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 12356654211 1 144 46888899999999999994
No 71
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=59.82 E-value=18 Score=41.70 Aligned_cols=93 Identities=14% Similarity=0.229 Sum_probs=57.2
Q ss_pred hhhchH-HHHHHHHHcCCCeeeecccccc---------------ccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 82 QYHRYK-EDIDLMKNLNFDAYRFSISWSR---------------IFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 82 ~y~ry~-eDi~l~~~lG~~~~R~si~W~r---------------i~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
.|.-+. +-+.-+|+||++++-+.=-... +.|.- |. .+-++++|++|.++||.+|+.+.
T Consensus 248 ty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-Gt-----p~dlk~LVd~aH~~GI~VilDvV 321 (758)
T PLN02447 248 SYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-GT-----PEDLKYLIDKAHSLGLRVLMDVV 321 (758)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-CC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 344433 3489999999999987632221 11111 22 24488999999999999999876
Q ss_pred c--CCC-------------cHHHHHHhCC----C-------CChhhHHHHHHHHHHHHHHh
Q 036937 146 H--YDM-------------PLALQEKYGG----L-------LDCQVVKDYADYADFCFKTF 180 (497)
Q Consensus 146 H--~~~-------------P~~l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~ 180 (497)
+ ..- +.++.....| | .++++...+.+=++.-+++|
T Consensus 322 ~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey 382 (758)
T PLN02447 322 HSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEY 382 (758)
T ss_pred cccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 4 211 1222210011 2 34677777777777777776
No 72
>PLN02784 alpha-amylase
Probab=59.68 E-value=26 Score=40.81 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=47.7
Q ss_pred chhhchHHHHHHHHHcCCCeeeeccccccccccCCC-----CCCh--hhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 81 DQYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTG-----TVNQ--KGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 81 d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g-----~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
.+|....+.++-|++||++++=++=.-....+.|-. .+|. -..+=++.+|++|+++||++|+.+.
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiV 589 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAV 589 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 578889999999999999999877654444333311 1221 1335589999999999999999864
No 73
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=59.57 E-value=27 Score=36.49 Aligned_cols=84 Identities=11% Similarity=0.020 Sum_probs=62.4
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEecc-CCCcHHHHHHhCCCCCh
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLYH-YDMPLALQEKYGGLLDC 163 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~~ 163 (497)
=.+|++++.+.|++.+.+.++=|...-... +.--.+.++.+.++|+.++++|+++.+++.. |..|. .+-
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r--- 193 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGP--- 193 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCC---
Confidence 479999999999999999987665544432 4445778899999999999999999877753 45542 222
Q ss_pred hhHHHHHHHHHHHHH
Q 036937 164 QVVKDYADYADFCFK 178 (497)
Q Consensus 164 ~~~~~f~~ya~~~~~ 178 (497)
-.++.+.++++.+.+
T Consensus 194 ~~~~~l~~~~~~~~~ 208 (347)
T PLN02746 194 VPPSKVAYVAKELYD 208 (347)
T ss_pred CCHHHHHHHHHHHHH
Confidence 236667777777654
No 74
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=59.01 E-value=50 Score=36.22 Aligned_cols=98 Identities=18% Similarity=0.269 Sum_probs=53.5
Q ss_pred HHHHHHHHhCCCcEEEeecCCCCCCCCCcCcccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeecccc-c---ccccCCC
Q 036937 388 ALMYVKERYGNPIVMLSENGMDDPSNYTVNHLLHDTTRVNYYRDYISQLKKAVDDGANVTGYFAWSLL-D---NFEWLLG 463 (497)
Q Consensus 388 ~l~~~~~rY~~~pI~ITENG~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~-D---n~EW~~G 463 (497)
.|..++++|++..|+-||...+..... ....+-.-.|. ..+...+...+..| +.||..|.|+ | ..-|..+
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~~-~~~~~g~w~~~---~~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~~n 392 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNWD-TSVDLGSWDRA---ERYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWVGN 392 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STTS--SS-TTHHHHH---HHHHHHHHHHHHTT--EEEEEEEESEBETTS---TT--
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCcc-cccccccHHHH---HHHHHHHHHHHHhh--ceeeeeeeeecCCCCCCcccCC
Confidence 467899999988899999977653210 00001111232 33455566667676 6899999985 2 2234444
Q ss_pred CCCccceEEEcCCCCCccccchHHHHHHHH
Q 036937 464 YSSRFGITYVDFDTLKRTPKMSAYWFKQLL 493 (497)
Q Consensus 464 y~~RfGL~~VD~~~~~R~pK~Sa~~y~~ii 493 (497)
+... .+-||.++.+-+..+.++.++.+-
T Consensus 393 ~~d~--~iivd~~~~~~~~~p~yY~~gHfS 420 (496)
T PF02055_consen 393 FCDA--PIIVDSDTGEFYKQPEYYAMGHFS 420 (496)
T ss_dssp -B----SEEEEGGGTEEEE-HHHHHHHHHH
T ss_pred CCCc--eeEEEcCCCeEEEcHHHHHHHHHh
Confidence 4433 344787655555566777665543
No 75
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=58.46 E-value=32 Score=38.64 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=37.3
Q ss_pred hhchHHH-----HHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 036937 83 YHRYKED-----IDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMP 150 (497)
Q Consensus 83 y~ry~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 150 (497)
|.+|.+| +++.++.|++.+|++.+.+.+ +-....|+.++++|....+++.+=+.|
T Consensus 91 ~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~-------------~~~~~ai~~ak~~G~~~~~~i~yt~~p 150 (593)
T PRK14040 91 YRHYADDVVERFVERAVKNGMDVFRVFDAMNDP-------------RNLETALKAVRKVGAHAQGTLSYTTSP 150 (593)
T ss_pred cccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH-------------HHHHHHHHHHHHcCCeEEEEEEEeeCC
Confidence 5666666 999999999999999755544 224456667777777665555543334
No 76
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=57.94 E-value=21 Score=40.72 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=39.8
Q ss_pred HHHHHHcCCCeeee----ccccccccccC-C----C-------------CCCh---hhhHHHHHHHHHHHHcCCeeEEEe
Q 036937 90 IDLMKNLNFDAYRF----SISWSRIFPEG-T----G-------------TVNQ---KGVDYYNRLIDYMLEQGITPYANL 144 (497)
Q Consensus 90 i~l~~~lG~~~~R~----si~W~ri~P~~-~----g-------------~~n~---~~l~~y~~~i~~l~~~gi~p~vtL 144 (497)
|+-+|+|||+++.+ ++.+.+..++. . | ..+. ..+.=++.||++|.++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999993 44444443321 0 1 1133 246678999999999999999977
Q ss_pred c
Q 036937 145 Y 145 (497)
Q Consensus 145 ~ 145 (497)
.
T Consensus 286 V 286 (697)
T COG1523 286 V 286 (697)
T ss_pred e
Confidence 4
No 77
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=57.54 E-value=31 Score=40.33 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=42.6
Q ss_pred hhchHHHHHHHHHcCCCeeeeccc---------------cccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSIS---------------WSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si~---------------W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
+....+-+.-+++||++++=+|=- +.+|.|.- | +.+=+++++++++++||++|+.+.
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~e~f~~Lv~aah~~Gi~VIlDiV 90 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G-----GEEGLRRLAAALRAHGMGLILDIV 90 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 345778899999999999966543 33444442 3 335589999999999999999874
No 78
>PRK14705 glycogen branching enzyme; Provisional
Probab=57.17 E-value=57 Score=39.73 Aligned_cols=91 Identities=20% Similarity=0.312 Sum_probs=56.8
Q ss_pred hHHH-HHHHHHcCCCeeeecc--------cccc-----ccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEec--cCC
Q 036937 86 YKED-IDLMKNLNFDAYRFSI--------SWSR-----IFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLY--HYD 148 (497)
Q Consensus 86 y~eD-i~l~~~lG~~~~R~si--------~W~r-----i~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~--H~~ 148 (497)
..+. |+-+|+||++++-+.= +|-= .-|++. |. .+=++.+|++|+++||.+|+.+. |+.
T Consensus 767 l~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt-----~~dfk~lVd~~H~~GI~VILD~V~nH~~ 841 (1224)
T PRK14705 767 LAKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGH-----PDEFRFLVDSLHQAGIGVLLDWVPAHFP 841 (1224)
T ss_pred HHHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCC-----HHHHHHHHHHHHHCCCEEEEEeccccCC
Confidence 3345 6889999999997542 2310 011111 33 34488999999999999999865 542
Q ss_pred CcHHHHHHh----------------CC-------CCChhhHHHHHHHHHHHHHHhC
Q 036937 149 MPLALQEKY----------------GG-------LLDCQVVKDYADYADFCFKTFG 181 (497)
Q Consensus 149 ~P~~l~~~~----------------gg-------w~~~~~~~~f~~ya~~~~~~~~ 181 (497)
.=.|....+ .. +.++++.+.+.+=+..-+++|+
T Consensus 842 ~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 842 KDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 111111000 11 3467788888888888888884
No 79
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=56.99 E-value=34 Score=37.17 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=41.9
Q ss_pred hhchHHH-----HHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 036937 83 YHRYKED-----IDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMP 150 (497)
Q Consensus 83 y~ry~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 150 (497)
|..|.+| ++++.+.|++.+|+..+-+.+ +-....++.+++.|+.+..++.+-..|
T Consensus 89 ~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 89 YRHYADDVVELFVKKVAEYGLDIIRIFDALNDI-------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred cccccchhhHHHHHHHHHCCcCEEEEEEeCCHH-------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 5667888 999999999999999866653 234567788888888888777654445
No 80
>PRK09505 malS alpha-amylase; Reviewed
Probab=56.91 E-value=20 Score=40.83 Aligned_cols=60 Identities=20% Similarity=0.338 Sum_probs=41.9
Q ss_pred hHHHHHHHHHcCCCeeeecccccccc-----------cc-C-CC-------CCCh--hhhHHHHHHHHHHHHcCCeeEEE
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIF-----------PE-G-TG-------TVNQ--KGVDYYNRLIDYMLEQGITPYAN 143 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~-----------P~-~-~g-------~~n~--~~l~~y~~~i~~l~~~gi~p~vt 143 (497)
..+-++-+++||++++=++=-...+. |. . .| .+|+ -..+=++.||++++++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 55668899999999999875444331 10 0 01 1222 24566899999999999999998
Q ss_pred ec
Q 036937 144 LY 145 (497)
Q Consensus 144 L~ 145 (497)
+.
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 65
No 81
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=56.64 E-value=44 Score=36.05 Aligned_cols=105 Identities=12% Similarity=0.146 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-cccccCCCCCChhhhHHHHHHHHHHHHcC-CeeEEEeccCCCcHHHHHHhCCCCCh
Q 036937 87 KEDIDLMKNLNFDAYRFSI-SWS-RIFPEGTGTVNQKGVDYYNRLIDYMLEQG-ITPYANLYHYDMPLALQEKYGGLLDC 163 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~n~~~l~~y~~~i~~l~~~g-i~p~vtL~H~~~P~~l~~~~ggw~~~ 163 (497)
+|.+++|+++|+|.+.+++ +-+ .+...- |+... .+-..+.|+.+++.| +.+.++|. +++|.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l-gR~~~--~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg------------ 226 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRA-GRKDD--REEVLARLEELVARDRAAVVCDLI-FGLPG------------ 226 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHh-CCCCC--HHHHHHHHHHHHhCCCCcEEEEEE-eeCCC------------
Confidence 6889999999999888888 332 222221 33221 245668899999999 66666665 67773
Q ss_pred hhHHHHHHHHHHHHHHhCCcceEEEeecCchhhhcccCCCCCCC
Q 036937 164 QVVKDYADYADFCFKTFGDRVKNWYTFNEPRVIAALGFDDGSNP 207 (497)
Q Consensus 164 ~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~G~~~ 207 (497)
++.+.|.+=.+.+.+-=-+.|..+...-+|.......+..|.++
T Consensus 227 qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 22333444444444333367887877778876433333345444
No 82
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=56.59 E-value=17 Score=40.22 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=39.4
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccC--C-C-------CCCh--hhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 85 RYKEDIDLMKNLNFDAYRFSISWSRIFPEG--T-G-------TVNQ--KGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~--~-g-------~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
-..+-++-+++|||+++=++=-. +.+ . | .+|+ -..+=++++|++++++||++|+.+.
T Consensus 29 gi~~~Ldyl~~LGv~~i~L~Pi~----~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V 97 (539)
T TIGR02456 29 GLTSKLDYLKWLGVDALWLLPFF----QSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLV 97 (539)
T ss_pred HHHHhHHHHHHCCCCEEEECCCc----CCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 34666889999999999765322 211 0 1 1222 1235589999999999999999874
No 83
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=56.31 E-value=41 Score=34.84 Aligned_cols=71 Identities=17% Similarity=0.255 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHH
Q 036937 88 EDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVK 167 (497)
Q Consensus 88 eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~ 167 (497)
.-|++|.+.|++.+=.|+ +.|++ .+...++.+.++++.+.+.|+++||.+. |+-|.. -||. .+.++
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl----~~~~~---~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~S-~~~l~ 85 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSL----LIPEE---DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNIS-LDNLS 85 (360)
T ss_pred HHHHHHHHcCccceeeec----ccCCc---hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCCC-hHHHH
Confidence 447899999998776665 34554 3345788999999999999999999995 888765 3554 34455
Q ss_pred HHHHH
Q 036937 168 DYADY 172 (497)
Q Consensus 168 ~f~~y 172 (497)
.|.+.
T Consensus 86 ~f~e~ 90 (360)
T COG3589 86 RFQEL 90 (360)
T ss_pred HHHHh
Confidence 55554
No 84
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=56.13 E-value=38 Score=34.28 Aligned_cols=85 Identities=13% Similarity=0.131 Sum_probs=61.8
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEecc-CCCcHHHHHHhCCCCCh
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLYH-YDMPLALQEKYGGLLDC 163 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~~ 163 (497)
-.+|+++..+.|++.++++++=|...-... +.--.+.++...++|+.++++|+++.+++.. |+.|. .|..
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~-- 152 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEV-- 152 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCC--
Confidence 589999999999999999986654432221 4445567888999999999999999887764 45552 3333
Q ss_pred hhHHHHHHHHHHHHHH
Q 036937 164 QVVKDYADYADFCFKT 179 (497)
Q Consensus 164 ~~~~~f~~ya~~~~~~ 179 (497)
.++.+.++++.+.+.
T Consensus 153 -~~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 -PPEAVADVAERLFAL 167 (287)
T ss_pred -CHHHHHHHHHHHHHc
Confidence 366777788877653
No 85
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=55.41 E-value=55 Score=33.31 Aligned_cols=84 Identities=10% Similarity=0.052 Sum_probs=50.3
Q ss_pred HHHHHcCCCeeeeccc--cccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHH
Q 036937 91 DLMKNLNFDAYRFSIS--WSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKD 168 (497)
Q Consensus 91 ~l~~~lG~~~~R~si~--W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~ 168 (497)
+.+++.|++++-++.- -....|.-.|.............|..|+++|++++|++=.+.-... -.+...++.
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~-------~~~~~~~~~ 91 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPL-------ATSCTSADQ 91 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCcc-------ccCcccHHH
Confidence 5677889999987753 2222222101111111234567899999999999999933322110 013456778
Q ss_pred HHHHHHHHHHHhC
Q 036937 169 YADYADFCFKTFG 181 (497)
Q Consensus 169 f~~ya~~~~~~~~ 181 (497)
|++....+.++|+
T Consensus 92 ~~~a~~~~i~~y~ 104 (294)
T cd06543 92 LAAAYQKVIDAYG 104 (294)
T ss_pred HHHHHHHHHHHhC
Confidence 8877777778885
No 86
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=55.36 E-value=47 Score=35.24 Aligned_cols=51 Identities=14% Similarity=0.269 Sum_probs=40.7
Q ss_pred hchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEe
Q 036937 84 HRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANL 144 (497)
Q Consensus 84 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 144 (497)
..|++||++++++||+.|=+.|- .. ..+.. +....+++.+.+.|.+.++++
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~-d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS-DSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC-CcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 45899999999999999999886 11 23444 456688899999998888887
No 87
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=55.26 E-value=63 Score=34.80 Aligned_cols=87 Identities=21% Similarity=0.455 Sum_probs=57.0
Q ss_pred hHHH-HHHHHHcCCCeeee-------------------------ccccccccccCCCCCChhhhHHHHHHHHHHHHcCCe
Q 036937 86 YKED-IDLMKNLNFDAYRF-------------------------SISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGIT 139 (497)
Q Consensus 86 y~eD-i~l~~~lG~~~~R~-------------------------si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~ 139 (497)
++.| ++++|+|.+..+|+ .+.|.-.|+.+ -| ..++++.|+..|.+
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~------~G---t~EF~~~~e~iGae 120 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNE------FG---THEFMDWCELIGAE 120 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccc------cc---HHHHHHHHHHhCCc
Confidence 4556 78999999999984 33344333332 12 45899999999999
Q ss_pred eEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHH--------HHhCC----cceEEEeecCc
Q 036937 140 PYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCF--------KTFGD----RVKNWYTFNEP 193 (497)
Q Consensus 140 p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~--------~~~~d----~V~~w~t~NEp 193 (497)
|++++.= |. ...+....|.+||..=. ...|- .||+|.+=||-
T Consensus 121 p~~avN~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm 174 (501)
T COG3534 121 PYIAVNL-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEM 174 (501)
T ss_pred eEEEEec-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEecccc
Confidence 9999952 11 23455566777764321 22232 59999999994
No 88
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=54.30 E-value=34 Score=34.26 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCeeeeccccc-cccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEe
Q 036937 87 KEDIDLMKNLNFDAYRFSISWS-RIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANL 144 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~-ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 144 (497)
+|.+++|+++|++.+-++++-+ .+.+.-.+..+ .+.+.+.++.++++||.+.+.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s---~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHT---YDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCC---HHHHHHHHHHHHHcCCEEEEeE
Confidence 7999999999999999999821 12332112223 3667789999999999865543
No 89
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.17 E-value=41 Score=36.43 Aligned_cols=111 Identities=23% Similarity=0.331 Sum_probs=72.7
Q ss_pred hhchHHHHHHHHHcCCCeeeec----cccccccccC-----------------------C-----CCCChhh----hHHH
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFS----ISWSRIFPEG-----------------------T-----GTVNQKG----VDYY 126 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~s----i~W~ri~P~~-----------------------~-----g~~n~~~----l~~y 126 (497)
|.+|+..|+.|+=.|+|..=.- +-|.+|+-.- . |...+.- +-.=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 6899999999999999976433 1244443321 0 2222211 1223
Q ss_pred HHHHHHHHHcCCeeEEEeccCCCcHHHHHHh--------CCC---------------CChhhHHHHHHHHHHHHHHhCCc
Q 036937 127 NRLIDYMLEQGITPYANLYHYDMPLALQEKY--------GGL---------------LDCQVVKDYADYADFCFKTFGDR 183 (497)
Q Consensus 127 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------ggw---------------~~~~~~~~f~~ya~~~~~~~~d~ 183 (497)
+++|+++++-||+|++--+---.|..|..-+ +-| ..|-+++-=..|-+...+.||.-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 5899999999999999998888898887532 222 23455566667778888999962
Q ss_pred --ceEEEeecCc
Q 036937 184 --VKNWYTFNEP 193 (497)
Q Consensus 184 --V~~w~t~NEp 193 (497)
+-.==||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 2222368884
No 90
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=53.72 E-value=25 Score=38.18 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=43.0
Q ss_pred hhhchHHH-----HHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 036937 82 QYHRYKED-----IDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMP 150 (497)
Q Consensus 82 ~y~ry~eD-----i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 150 (497)
-|..|.+| ++++++.|++.+|..-....+ +-....|+.+++.|....+++.|=+-|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~-------------~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDALNDP-------------RNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccCCCH-------------HHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 37778889 999999999999987533322 335577888888888888888876666
No 91
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.38 E-value=61 Score=32.95 Aligned_cols=107 Identities=10% Similarity=0.074 Sum_probs=70.0
Q ss_pred chHHHHHHHHHcCC--CeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCC---cHHHH-----
Q 036937 85 RYKEDIDLMKNLNF--DAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDM---PLALQ----- 154 (497)
Q Consensus 85 ry~eDi~l~~~lG~--~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~---P~~l~----- 154 (497)
...+-++.+++.|+ +++=+.+.|..-. +.=.+|.+-.---..+++.|+++|+++++.+.=+-. +..-+
T Consensus 31 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 31 TVLNYAQEIIDNGFPNGQIEIDDNWETCY--GDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHHHcCCCCCeEEeCCCccccC--CccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 35667788899995 5777777785431 111344433334579999999999999887753211 11111
Q ss_pred ----HHhC----------------CCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCch
Q 036937 155 ----EKYG----------------GLLDCQVVKDYADYADFCFKTFGDRVKNWYTFNEPR 194 (497)
Q Consensus 155 ----~~~g----------------gw~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~ 194 (497)
++-| .++||+..+.|.+..+.++...|= --+|+=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 0001 278899999999988888866643 34677789996
No 92
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=52.91 E-value=77 Score=32.45 Aligned_cols=108 Identities=15% Similarity=0.224 Sum_probs=70.1
Q ss_pred HHHHHHHHHcCCC-eeeeccc--cccccc-c-CCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCC
Q 036937 87 KEDIDLMKNLNFD-AYRFSIS--WSRIFP-E-GTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLL 161 (497)
Q Consensus 87 ~eDi~l~~~lG~~-~~R~si~--W~ri~P-~-~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 161 (497)
+|.+++|+++|++ .+-++++ =.++.- . ..| .+. +-+.+.++.++++||.+.+.+. +++|.. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg-~t~---~~~~~ai~~~~~~Gi~v~~~~i-~G~P~~--------s 183 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG-STF---EDFIRAAELARKYGAGVKAYLL-FKPPFL--------S 183 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC-CCH---HHHHHHHHHHHHcCCcEEEEEE-ecCCCC--------C
Confidence 6889999999998 5666662 222321 1 112 333 5678999999999999777664 455521 2
Q ss_pred ChhhHHHHHHHHHHHHHHhCCcceEEEeecCchhhhcccCCCCCCCC
Q 036937 162 DCQVVKDYADYADFCFKTFGDRVKNWYTFNEPRVIAALGFDDGSNPP 208 (497)
Q Consensus 162 ~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~G~~~P 208 (497)
..+.++.+.+.++.+.+ +++.|....+.=+|+.....-|..|.|.|
T Consensus 184 e~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 184 EKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred hhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 23677777777777764 45778877776677654433455666655
No 93
>PRK10785 maltodextrin glucosidase; Provisional
Probab=52.47 E-value=25 Score=39.50 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=39.4
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCC--C-------CCCh--hhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGT--G-------TVNQ--KGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~--g-------~~n~--~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
..+-++-+++|||+++=++=- ++.+. | .+|+ -..+=+++||++++++||++|+.+.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pi----f~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPI----FTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCc----ccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 456688999999999987642 22221 1 1221 1335588999999999999999875
No 94
>PRK03705 glycogen debranching enzyme; Provisional
Probab=52.11 E-value=32 Score=39.15 Aligned_cols=55 Identities=16% Similarity=0.295 Sum_probs=37.5
Q ss_pred HHHHHHcCCCeeeeccc-----------------c-------ccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 90 IDLMKNLNFDAYRFSIS-----------------W-------SRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 90 i~l~~~lG~~~~R~si~-----------------W-------~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
|+-+|+|||+++=+.=- | -.+.|.- |.-....++=+++||++|+++||++|+.+.
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 88999999999976321 1 1222221 221112356689999999999999999875
No 95
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=51.27 E-value=41 Score=35.20 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhh
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQV 165 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 165 (497)
.+|++.+.+.|++.+|+.++-|.+.-... +.--.+.++...+.|+.++++|+++.+++- + .+.. .
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e---------d--~~r~---~ 140 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE---------D--ASRA---D 140 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec---------C--CCCC---C
Confidence 79999999999999999998776533321 333456788889999999999999776652 1 2222 3
Q ss_pred HHHHHHHHHHHHH
Q 036937 166 VKDYADYADFCFK 178 (497)
Q Consensus 166 ~~~f~~ya~~~~~ 178 (497)
++.+.++++.+.+
T Consensus 141 ~~~l~~~~~~~~~ 153 (365)
T TIGR02660 141 PDFLVELAEVAAE 153 (365)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666666544
No 96
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=51.18 E-value=45 Score=33.50 Aligned_cols=83 Identities=11% Similarity=0.137 Sum_probs=59.9
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEecc-CCCcHHHHHHhCCCCChh
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLYH-YDMPLALQEKYGGLLDCQ 164 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H-~~~P~~l~~~~ggw~~~~ 164 (497)
.+|++++.+.|++.+++.++=|...-... +.--.+.++...+.++.++++|+++.+++.. |+.|. .+- -
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~---~ 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGE---V 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCC---C
Confidence 68999999999999999986665422221 3333667788999999999999999988863 55552 222 2
Q ss_pred hHHHHHHHHHHHHH
Q 036937 165 VVKDYADYADFCFK 178 (497)
Q Consensus 165 ~~~~f~~ya~~~~~ 178 (497)
.++.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 PPERVAEVAERLLD 160 (274)
T ss_pred CHHHHHHHHHHHHH
Confidence 46667777777654
No 97
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=50.94 E-value=1e+02 Score=31.15 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=65.2
Q ss_pred chHHHHHHHHHcC--CCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccC---CCcHHHHHHh--
Q 036937 85 RYKEDIDLMKNLN--FDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHY---DMPLALQEKY-- 157 (497)
Q Consensus 85 ry~eDi~l~~~lG--~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~~-- 157 (497)
...+-++.+++.| +.++=+.+.|.+-.-.+.=.+|.+-.---+.+|++|+++|+++++.+.-+ +.|..-+.+-
T Consensus 25 ~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g 104 (308)
T cd06593 25 EVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKG 104 (308)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCC
Confidence 3567788999999 55677777887432111113343333345799999999999988877533 2232211100
Q ss_pred -------------------C---CCCChhhHHHHHHHHHHHHHHhCCcce-EEEeecCc
Q 036937 158 -------------------G---GLLDCQVVKDYADYADFCFKTFGDRVK-NWYTFNEP 193 (497)
Q Consensus 158 -------------------g---gw~~~~~~~~f~~ya~~~~~~~~d~V~-~w~t~NEp 193 (497)
+ .++||+..+.|.+..+.+.+ .| |+ +|+=+|||
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~ 160 (308)
T cd06593 105 YLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGER 160 (308)
T ss_pred eEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCC
Confidence 0 26788999888877776544 33 44 45557887
No 98
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=50.46 E-value=82 Score=32.65 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=46.2
Q ss_pred HHHHHHHHHcCCeeEEEeccCCCc--------HHHHH--H-----------h-----------CCCCChhhHHHHHHHHH
Q 036937 127 NRLIDYMLEQGITPYANLYHYDMP--------LALQE--K-----------Y-----------GGLLDCQVVKDYADYAD 174 (497)
Q Consensus 127 ~~~i~~l~~~gi~p~vtL~H~~~P--------~~l~~--~-----------~-----------ggw~~~~~~~~f~~ya~ 174 (497)
++||++|+++|++.++.+.-+-.+ ..-+. + + =.++||+.++.|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 789999999999988887644332 11110 0 0 13788999998887777
Q ss_pred HHHHHhCCcceEEEeecCchhh
Q 036937 175 FCFKTFGDRVKNWYTFNEPRVI 196 (497)
Q Consensus 175 ~~~~~~~d~V~~w~t~NEp~~~ 196 (497)
.++..+|= .-+|+=+|||..+
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~~ 169 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSNF 169 (339)
T ss_pred HHHhcCCC-cEEEecCCCCchH
Confidence 66655433 3567778999643
No 99
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=50.26 E-value=1.2e+02 Score=31.50 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=62.4
Q ss_pred CCCchhhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHh
Q 036937 78 VTVDQYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKY 157 (497)
Q Consensus 78 ~a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 157 (497)
+|-=||+ |+= .-...+.|+..||+. + |.+-.+ +....+++.++++||..=+..+|-.+..-+.++|
T Consensus 78 VaDiHf~-~rl-a~~~~~~g~~k~RIN---------P-GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky 143 (361)
T COG0821 78 VADIHFD-YRL-ALEAAECGVDKVRIN---------P-GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKY 143 (361)
T ss_pred EEEeecc-HHH-HHHhhhcCcceEEEC---------C-cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHHHh
Confidence 3333565 332 233456678888863 3 444333 3688999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHHHHHHH
Q 036937 158 GGLLDCQVVKDYADYADFC 176 (497)
Q Consensus 158 ggw~~~~~~~~f~~ya~~~ 176 (497)
++-+.+..++--.++|+.+
T Consensus 144 ~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 144 GGPTPEALVESALEHAELL 162 (361)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 8887777777766777665
No 100
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=50.11 E-value=9.2 Score=31.34 Aligned_cols=19 Identities=37% Similarity=0.774 Sum_probs=13.9
Q ss_pred HHHHhCC--cceEEEeecC-ch
Q 036937 176 CFKTFGD--RVKNWYTFNE-PR 194 (497)
Q Consensus 176 ~~~~~~d--~V~~w~t~NE-p~ 194 (497)
++++||+ +|.+|-.+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4567766 8999999999 66
No 101
>PRK12568 glycogen branching enzyme; Provisional
Probab=49.12 E-value=30 Score=39.75 Aligned_cols=94 Identities=17% Similarity=0.234 Sum_probs=57.9
Q ss_pred hhchHHH-HHHHHHcCCCeeeecc--------cccc-----ccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEec--
Q 036937 83 YHRYKED-IDLMKNLNFDAYRFSI--------SWSR-----IFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLY-- 145 (497)
Q Consensus 83 y~ry~eD-i~l~~~lG~~~~R~si--------~W~r-----i~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-- 145 (497)
|.-..+. |.-+|+||++++-+.= +|.- ..|++. |. .+-++.+|++|+++||++|+.+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~-----~~dfk~lV~~~H~~Gi~VIlD~V~n 342 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGS-----PDGFAQFVDACHRAGIGVILDWVSA 342 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCC-----HHHHHHHHHHHHHCCCEEEEEeccc
Confidence 4444444 6889999999996542 3421 111211 33 34588999999999999999875
Q ss_pred cCCCc-----------HHHH-H-H---hC-------CCCChhhHHHHHHHHHHHHHHhC
Q 036937 146 HYDMP-----------LALQ-E-K---YG-------GLLDCQVVKDYADYADFCFKTFG 181 (497)
Q Consensus 146 H~~~P-----------~~l~-~-~---~g-------gw~~~~~~~~f~~ya~~~~~~~~ 181 (497)
|+.-- .+.. + . +. .+.++++.+.+.+=+..-+++|+
T Consensus 343 H~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 343 HFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred cCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 43211 0100 0 0 01 23467778888888888888874
No 102
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=49.08 E-value=1.1e+02 Score=31.76 Aligned_cols=70 Identities=16% Similarity=0.280 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCeeEEEeccC-CCcHHHHHH--hCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCchhhhc
Q 036937 127 NRLIDYMLEQGITPYANLYHY-DMPLALQEK--YGGLLDCQVVKDYADYADFCFKTFGDRVKNWYTFNEPRVIAA 198 (497)
Q Consensus 127 ~~~i~~l~~~gi~p~vtL~H~-~~P~~l~~~--~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~ 198 (497)
+.++++|++.|++.++.+.-+ ..-...... +-.|+||+..+.|.+..+.+.+ .| -.-+|+=.|||.++..
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~G-v~~~W~DmnEp~~~~~ 139 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IG-LEFVWQDMTTPAIMPS 139 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CC-CceeecCCCCcccccC
Confidence 589999999999987766411 100000000 1247889999988776655433 23 2347888999998754
No 103
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=48.97 E-value=42 Score=35.40 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEe
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANL 144 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 144 (497)
++|++.+.+.|++.++++++-|.+.-... +.--.+.++-..+.++.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 78999999999999999998776643321 44456678889999999999999988874
No 104
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=48.72 E-value=76 Score=33.19 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCeeeeccc--cccccccCCCCCChhhhHHHHHHHHHHHHcCCeeE-EEeccCCCcH
Q 036937 87 KEDIDLMKNLNFDAYRFSIS--WSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPY-ANLYHYDMPL 151 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~--W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~ 151 (497)
++.+++|+++|++.+-++++ -.++...-....+. +-..+.|+.+++.|+..+ +.+ =+++|.
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~---~~~~~~i~~l~~~g~~~v~~dl-i~GlPg 163 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNE---EDVYEAIANAKKAGFDNISIDL-IYALPG 163 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCH---HHHHHHHHHHHHcCCCcEEEee-ecCCCC
Confidence 68899999999997777772 22343332122333 557789999999999743 333 356773
No 105
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=48.42 E-value=99 Score=30.97 Aligned_cols=68 Identities=9% Similarity=0.039 Sum_probs=49.0
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhh
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQV 165 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~ 165 (497)
-++|+++..+.|++.+|+++..+.+ +.-...++.++++|+++.+++.--+ + ++..
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~~-------------~~~~~~i~~ak~~G~~v~~~i~~~~---------~---~~~~ 147 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALNDV-------------RNLEVAIKAVKKAGKHVEGAICYTG---------S---PVHT 147 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCChH-------------HHHHHHHHHHHHCCCeEEEEEEecC---------C---CCCC
Confidence 4789999999999999998866553 4566889999999999887763111 1 1234
Q ss_pred HHHHHHHHHHHHH
Q 036937 166 VKDYADYADFCFK 178 (497)
Q Consensus 166 ~~~f~~ya~~~~~ 178 (497)
.+.+.++++.+.+
T Consensus 148 ~~~~~~~~~~~~~ 160 (275)
T cd07937 148 LEYYVKLAKELED 160 (275)
T ss_pred HHHHHHHHHHHHH
Confidence 5566667777654
No 106
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=48.25 E-value=63 Score=33.65 Aligned_cols=53 Identities=13% Similarity=0.248 Sum_probs=44.4
Q ss_pred HHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 90 IDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 90 i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
++.++++|.+++-+-+-|. |+....+|.+-+++..++.++|++.||..++-+.
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l 164 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDDAINDRKHAFVERVGAECRANDIPFFLEPL 164 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEe
Confidence 5779999999999999887 5532346788889999999999999999888653
No 107
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=48.17 E-value=87 Score=33.20 Aligned_cols=103 Identities=13% Similarity=0.205 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCCeeeecc-cc-ccccccCCCC-CChhhhHHHHHHHHHHHHcCCe-eEEEeccCCCcHHHHHHhCCCCC
Q 036937 87 KEDIDLMKNLNFDAYRFSI-SW-SRIFPEGTGT-VNQKGVDYYNRLIDYMLEQGIT-PYANLYHYDMPLALQEKYGGLLD 162 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~g~-~n~~~l~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw~~ 162 (497)
++.++.|+++|+|.+-+++ +- .++...= |+ .+. +-..+.++.+++.|++ +.++|. +++|.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l-~R~~~~---~~~~~ai~~l~~~G~~~v~~dlI-~GlPg----------- 178 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALC-GRSHRV---KDIFAAVDLIHQAGIENFSLDLI-SGLPH----------- 178 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHh-CCCCCH---HHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 5889999999999766666 22 2222221 22 233 4456789999999998 556664 67773
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEeecCchhhhcccCCCCCC
Q 036937 163 CQVVKDYADYADFCFKTFGDRVKNWYTFNEPRVIAALGFDDGSN 206 (497)
Q Consensus 163 ~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~G~~ 206 (497)
++.+.+.+=++.+.+-=-+.|..+...-||......-+..|.+
T Consensus 179 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 -QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred -CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 2233344433443332235677776667777544433444443
No 108
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=46.96 E-value=73 Score=34.49 Aligned_cols=51 Identities=8% Similarity=-0.003 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMP 150 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 150 (497)
++|++++.+.|++.+|+.++-+.+. -....|+.++++|+.+.+++..-+-|
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~-------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVR-------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHH-------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 5667999999999999998766552 14568899999999988888765555
No 109
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=46.54 E-value=84 Score=32.41 Aligned_cols=59 Identities=17% Similarity=0.326 Sum_probs=49.8
Q ss_pred HHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcH
Q 036937 90 IDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPL 151 (497)
Q Consensus 90 i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 151 (497)
.+.+|++|.+++.|=+=|. |++.-.+|..-.++.+++.++|++.+|-=++=+.-++.+.
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~ 169 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKI 169 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCcc
Confidence 6889999999999998887 5553458888889999999999999999888887666543
No 110
>PLN02960 alpha-amylase
Probab=46.54 E-value=37 Score=39.67 Aligned_cols=94 Identities=14% Similarity=0.207 Sum_probs=58.7
Q ss_pred hhhchHHH-HHHHHHcCCCeeeeccc--------cc-------cccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 82 QYHRYKED-IDLMKNLNFDAYRFSIS--------WS-------RIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 82 ~y~ry~eD-i~l~~~lG~~~~R~si~--------W~-------ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
.|.-..+. |.-+|+||++++-+.=- |. .+.|.- |. .+=++.+|++|.++||.+|+.+.
T Consensus 414 tf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-Gt-----p~dfk~LVd~aH~~GI~VILDvV 487 (897)
T PLN02960 414 SFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-GT-----PDDFKRLVDEAHGLGLLVFLDIV 487 (897)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-CC-----HHHHHHHHHHHHHCCCEEEEEec
Confidence 45555544 89999999999986521 11 111111 32 24478999999999999999874
Q ss_pred --cCCC--c--HHHHHH-------------hCCC-------CChhhHHHHHHHHHHHHHHhC
Q 036937 146 --HYDM--P--LALQEK-------------YGGL-------LDCQVVKDYADYADFCFKTFG 181 (497)
Q Consensus 146 --H~~~--P--~~l~~~-------------~ggw-------~~~~~~~~f~~ya~~~~~~~~ 181 (497)
|+.. + .+..+. +..| .++++.+.+.+=++.-+++|+
T Consensus 488 ~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 488 HSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 4321 1 111110 0112 356777888888888888874
No 111
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=46.05 E-value=26 Score=42.78 Aligned_cols=64 Identities=16% Similarity=0.304 Sum_probs=40.6
Q ss_pred hhhchH--HHHHHHHHcCCCeeeecccccccc-----ccC-C---C-------CCCh--h--hhHHHHHHHHHHHHcCCe
Q 036937 82 QYHRYK--EDIDLMKNLNFDAYRFSISWSRIF-----PEG-T---G-------TVNQ--K--GVDYYNRLIDYMLEQGIT 139 (497)
Q Consensus 82 ~y~ry~--eDi~l~~~lG~~~~R~si~W~ri~-----P~~-~---g-------~~n~--~--~l~~y~~~i~~l~~~gi~ 139 (497)
-|.... +.|+-+|+|||+++=+.=-..... +.+ . | .++. . .++=+++||++|+++||+
T Consensus 183 t~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~ 262 (1221)
T PRK14510 183 TFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIA 262 (1221)
T ss_pred HHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCE
Confidence 344444 668899999999997653221110 000 0 0 0111 1 456689999999999999
Q ss_pred eEEEec
Q 036937 140 PYANLY 145 (497)
Q Consensus 140 p~vtL~ 145 (497)
+|+.+.
T Consensus 263 VILDvV 268 (1221)
T PRK14510 263 VILDVV 268 (1221)
T ss_pred EEEEEc
Confidence 999764
No 112
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=45.15 E-value=91 Score=32.24 Aligned_cols=60 Identities=20% Similarity=0.376 Sum_probs=50.6
Q ss_pred HHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcH
Q 036937 89 DIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPL 151 (497)
Q Consensus 89 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 151 (497)
+.+.+|++|.+++.|=+=|. |+++-.+|..-.++.+++.++|++.+|-=++=+.-+|.+.
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~ 171 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERI 171 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcc
Confidence 57899999999999998887 5543458888889999999999999999999887776543
No 113
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=45.10 E-value=40 Score=39.22 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=42.2
Q ss_pred hhchHHHHHHHHHcCCCeeeeccccc---------------cccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSISWS---------------RIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si~W~---------------ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
+....+-+.-+++||++++=+|=-+. +|.|.- | +.+=+++++++|+++||.+|+.+.
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----t~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL-G-----GEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC-C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 34467889999999999997665433 233222 2 345688999999999999999864
No 114
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=43.86 E-value=86 Score=34.68 Aligned_cols=106 Identities=15% Similarity=0.159 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCCeeeeccc--cccccccCCCC-CChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCCh
Q 036937 87 KEDIDLMKNLNFDAYRFSIS--WSRIFPEGTGT-VNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDC 163 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~--W~ri~P~~~g~-~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 163 (497)
++.+++|+++|++.+-+++. -.++...- ++ .+ ++-..+.++.+++.|+++.+.|. +++|.
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~i-nRght---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg------------ 268 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERT-KRGHT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG------------ 268 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC------------
Confidence 68899999999998877772 33333221 11 22 24456788899999998666664 56663
Q ss_pred hhHHHHHHHHHHHHH--HhC-CcceEEEeecCchhhhcccCCCCCCCCC
Q 036937 164 QVVKDYADYADFCFK--TFG-DRVKNWYTFNEPRVIAALGFDDGSNPPS 209 (497)
Q Consensus 164 ~~~~~f~~ya~~~~~--~~~-d~V~~w~t~NEp~~~~~~gy~~G~~~Pg 209 (497)
++.+.+.+=++.+++ .++ |.|+.+.+.=.|......-|..|.|.|.
T Consensus 269 qt~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 269 SSFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred CCHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 223445555555654 343 5777777666666544444667777764
No 115
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=42.65 E-value=1.6e+02 Score=30.04 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=45.8
Q ss_pred HHHHHHHHHHcCCeeEEEeccCCC-----cHHHHHH------------------------hCCCCChhhHHHHHHHHHHH
Q 036937 126 YNRLIDYMLEQGITPYANLYHYDM-----PLALQEK------------------------YGGLLDCQVVKDYADYADFC 176 (497)
Q Consensus 126 y~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~------------------------~ggw~~~~~~~~f~~ya~~~ 176 (497)
-.+||+.|+++|++.++.+.-+-. |...+.. +=.|+||+.++.|.+..+.+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHH
Confidence 358999999999998877653211 2221110 01378999999998877776
Q ss_pred HHHhCCcceEEEeecCchhh
Q 036937 177 FKTFGDRVKNWYTFNEPRVI 196 (497)
Q Consensus 177 ~~~~~d~V~~w~t~NEp~~~ 196 (497)
....|= .-+|+=+|||..+
T Consensus 146 ~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 146 LNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred hhcCCC-ceEEeeCCCCccH
Confidence 544432 3477778999643
No 116
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=41.81 E-value=65 Score=40.52 Aligned_cols=60 Identities=17% Similarity=0.264 Sum_probs=44.2
Q ss_pred hhchHHHHHHHHHcCCCeeeeccccc---------------cccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec--
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSISWS---------------RIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY-- 145 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si~W~---------------ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-- 145 (497)
.....+-+.-+++|||+++=+|=-+. +|.|.- | +.+=+++++++|+++||.+|+.+.
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-----~~edf~~Lv~~ah~~Gi~vilDiV~N 830 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI-G-----GEEGFERFCAALKAHGLGQLLDIVPN 830 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc-C-----CHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 45577778999999999997664443 333332 2 345589999999999999999774
Q ss_pred cCC
Q 036937 146 HYD 148 (497)
Q Consensus 146 H~~ 148 (497)
|..
T Consensus 831 H~~ 833 (1693)
T PRK14507 831 HMG 833 (1693)
T ss_pred ccC
Confidence 654
No 117
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=41.73 E-value=1.6e+02 Score=30.06 Aligned_cols=70 Identities=9% Similarity=0.045 Sum_probs=43.2
Q ss_pred HHHHHHHHHHcCCeeEEEeccC---CCcHHHHHH-----------------------hCCCCChhhHHHHHHHHHHHHHH
Q 036937 126 YNRLIDYMLEQGITPYANLYHY---DMPLALQEK-----------------------YGGLLDCQVVKDYADYADFCFKT 179 (497)
Q Consensus 126 y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~-----------------------~ggw~~~~~~~~f~~ya~~~~~~ 179 (497)
-..+|+.|+++|+++++.+.-+ +.+.+-+-+ +-.|+||+..+.|.+..+..+..
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 147 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD 147 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc
Confidence 4689999999999988877422 112111100 01267888888776655544333
Q ss_pred hCCcceEEEeecCchhh
Q 036937 180 FGDRVKNWYTFNEPRVI 196 (497)
Q Consensus 180 ~~d~V~~w~t~NEp~~~ 196 (497)
.|= --+|+=+|||..+
T Consensus 148 ~Gv-dg~w~D~~Ep~~~ 163 (319)
T cd06591 148 KGV-DAWWLDAAEPEYS 163 (319)
T ss_pred CCC-cEEEecCCCCCcc
Confidence 322 4577778999864
No 118
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=41.44 E-value=63 Score=33.64 Aligned_cols=60 Identities=18% Similarity=0.251 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCeeeeccc-cc-cccccCCCC-CChhhhHHHHHHHHHHHHcCCeeE-EEeccCCCcH
Q 036937 87 KEDIDLMKNLNFDAYRFSIS-WS-RIFPEGTGT-VNQKGVDYYNRLIDYMLEQGITPY-ANLYHYDMPL 151 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~-~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~ 151 (497)
++.++.|+++|++.+.++++ -+ ++...= |+ .+ .+-+.+.|+.+++.|+.++ +.| -+++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~~~---~~~~~~ai~~l~~~G~~~v~~dl-i~GlPg 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQHS---AKNIAPAIETALKSGIENISLDL-MYGLPL 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEec-cCCCCC
Confidence 68899999999997777763 32 333222 33 23 3557789999999999754 444 366763
No 119
>PRK14706 glycogen branching enzyme; Provisional
Probab=41.40 E-value=1.6e+02 Score=33.51 Aligned_cols=89 Identities=13% Similarity=0.117 Sum_probs=52.3
Q ss_pred HHHHHcCCCeeeeccccccccccC-C-CC-------CC--hhhhHHHHHHHHHHHHcCCeeEEEec--cCCC--------
Q 036937 91 DLMKNLNFDAYRFSISWSRIFPEG-T-GT-------VN--QKGVDYYNRLIDYMLEQGITPYANLY--HYDM-------- 149 (497)
Q Consensus 91 ~l~~~lG~~~~R~si~W~ri~P~~-~-g~-------~n--~~~l~~y~~~i~~l~~~gi~p~vtL~--H~~~-------- 149 (497)
.-+|+||++++-+.=-= -.|.. . |. ++ ....+=++.+|++|.++||++|+.+. |+..
T Consensus 175 ~ylk~lG~t~velmPv~--e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~ 252 (639)
T PRK14706 175 EYVTYMGYTHVELLGVM--EHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHF 252 (639)
T ss_pred HHHHHcCCCEEEccchh--cCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhcc
Confidence 56899999998754210 01111 0 10 01 11234488999999999999999765 4321
Q ss_pred ---cHHH-HHHhC----CC-------CChhhHHHHHHHHHHHHHHhC
Q 036937 150 ---PLAL-QEKYG----GL-------LDCQVVKDYADYADFCFKTFG 181 (497)
Q Consensus 150 ---P~~l-~~~~g----gw-------~~~~~~~~f~~ya~~~~~~~~ 181 (497)
|.+. .+... .| .++++.+.+.+=++.-+++|+
T Consensus 253 dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 253 DGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1110 00001 12 257888888888888888884
No 120
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=41.06 E-value=57 Score=32.60 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhH
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVV 166 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 166 (497)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+-.. ...
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~-------------~~~~~~~~i~~ak~~G~~v~~~~~~a~~--------------~~~ 137 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH-------------EFDEALPLIKAIKEKGYEVFFNLMAISG--------------YSD 137 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc-------------cHHHHHHHHHHHHHCCCeEEEEEEeecC--------------CCH
Confidence 5889999999999999987443 3456789999999999999999865211 235
Q ss_pred HHHHHHHHHHHH
Q 036937 167 KDYADYADFCFK 178 (497)
Q Consensus 167 ~~f~~ya~~~~~ 178 (497)
+.+.++++.+.+
T Consensus 138 ~~~~~~~~~~~~ 149 (266)
T cd07944 138 EELLELLELVNE 149 (266)
T ss_pred HHHHHHHHHHHh
Confidence 666777777654
No 121
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=40.96 E-value=1e+02 Score=35.72 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=61.4
Q ss_pred cCCCeeeeccc-cccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEecc---CCCcHHHHH--H-------------
Q 036937 96 LNFDAYRFSIS-WSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYH---YDMPLALQE--K------------- 156 (497)
Q Consensus 96 lG~~~~R~si~-W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H---~~~P~~l~~--~------------- 156 (497)
+=+.++++++. |.+ .-+.=++|..-.---+.||+.|++.||+.++.+.. -|.|+--+. +
T Consensus 294 IP~d~~~lD~~~~~~--~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~ 371 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQ 371 (772)
T ss_pred CcceEEEEeehhhhc--cccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEee
Confidence 45788999995 876 11111233332233459999999999999888863 233322211 1
Q ss_pred ---------hCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCchhhhc
Q 036937 157 ---------YGGLLDCQVVKDYADYADFCFKTFGDRVKNWYTFNEPRVIAA 198 (497)
Q Consensus 157 ---------~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~ 198 (497)
+-.++||+.+++|.+....-+..+| -.-+|.=+|||.++..
T Consensus 372 ~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~ 421 (772)
T COG1501 372 ADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDG 421 (772)
T ss_pred ecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCccccc
Confidence 0137899999999873322223332 2467888999997654
No 122
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=40.73 E-value=1.5e+02 Score=31.04 Aligned_cols=93 Identities=13% Similarity=0.090 Sum_probs=53.9
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-cccccCCCC-CChhhhHHHHHHHHHHHHcCCe-eEEEeccCCCcHHHHHHhCCCCC
Q 036937 87 KEDIDLMKNLNFDAYRFSI-SWS-RIFPEGTGT-VNQKGVDYYNRLIDYMLEQGIT-PYANLYHYDMPLALQEKYGGLLD 162 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~-~n~~~l~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw~~ 162 (497)
+|.+++|+++|++.+.+++ +-+ ++...- |+ .+. +-..+.++.+++.|+. +.++|. +++|.
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~s~---~~~~~a~~~l~~~g~~~v~~dli-~GlPg----------- 171 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQSAAPHVLAVL-DRTHTP---GRAVAAAREARAAGFEHVNLDLI-YGTPG----------- 171 (375)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCCH---HHHHHHHHHHHHcCCCcEEEEEe-ccCCC-----------
Confidence 5889999999999766666 222 222221 22 233 5567889999999998 556553 56663
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEeecCchhh
Q 036937 163 CQVVKDYADYADFCFKTFGDRVKNWYTFNEPRVI 196 (497)
Q Consensus 163 ~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 196 (497)
++.+.|.+=.+.+.+.=-+.|..+...=||...
T Consensus 172 -qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~ 204 (375)
T PRK05628 172 -ESDDDWRASLDAALEAGVDHVSAYALIVEDGTA 204 (375)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCCh
Confidence 234444444444433222455544444466543
No 123
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=40.69 E-value=1.8e+02 Score=30.99 Aligned_cols=92 Identities=16% Similarity=0.182 Sum_probs=59.8
Q ss_pred chHHHHHHHHHcCCCeeeecccccc-----------ccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec--------
Q 036937 85 RYKEDIDLMKNLNFDAYRFSISWSR-----------IFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY-------- 145 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~W~r-----------i~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~-------- 145 (497)
...+-++.++++|++.+-+.=-|.. .+|+. .++ +.| ...+++.+++.|+++=+=+-
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~-~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP-KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT-TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh-hhh-CCc---HHHHHHHHHHCCCeEEEEeccccccchh
Confidence 4556678999999999988889964 33333 223 234 56899999999999755331
Q ss_pred --cCCCcHHHHHHh------------CCCCChhhHHHHHHHHHHHHHHhC
Q 036937 146 --HYDMPLALQEKY------------GGLLDCQVVKDYADYADFCFKTFG 181 (497)
Q Consensus 146 --H~~~P~~l~~~~------------ggw~~~~~~~~f~~ya~~~~~~~~ 181 (497)
.-..|.|+.... -...+|++.++..+-...+++.+|
T Consensus 134 ~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 134 DLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp CHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 123588864310 024678888888888888778776
No 124
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=39.76 E-value=1.2e+02 Score=30.03 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
.+|++++++.|++.+|+.++-+.+. -..++++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~-------------~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD-------------VSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH-------------HHHHHHHHHHHCCCeEEEEEE
Confidence 6999999999999999988776542 246789999999999988884
No 125
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=39.72 E-value=66 Score=33.42 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=50.2
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhH
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVV 166 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 166 (497)
.+|+++..+.|++.+|+....++. +--.+.|+.+++.|+++.+++..-. ...+
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~-------------~~~~~~i~~ak~~G~~v~~~l~~a~--------------~~~~ 143 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA-------------DVSEQHIGLARELGMDTVGFLMMSH--------------MAPP 143 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH-------------HHHHHHHHHHHHCCCeEEEEEEecc--------------CCCH
Confidence 589999999999999998765553 1246899999999999999986321 1235
Q ss_pred HHHHHHHHHHHHHhCC
Q 036937 167 KDYADYADFCFKTFGD 182 (497)
Q Consensus 167 ~~f~~ya~~~~~~~~d 182 (497)
+.+++.++.+. .+|-
T Consensus 144 e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 144 EKLAEQAKLME-SYGA 158 (337)
T ss_pred HHHHHHHHHHH-hCCC
Confidence 66677777754 4553
No 126
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=39.64 E-value=95 Score=31.34 Aligned_cols=59 Identities=22% Similarity=0.370 Sum_probs=48.3
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEe
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANL 144 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 144 (497)
-.+|+++..+.|++.+-+.++=|...-... +.=-.+.++.+.++++.++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 379999999999999998886665544322 44456788999999999999999999888
No 127
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=39.27 E-value=1.4e+02 Score=30.81 Aligned_cols=71 Identities=14% Similarity=0.158 Sum_probs=48.9
Q ss_pred HHHHHHHHHcCCeeEEEeccCCC-----cHHHHHH------------------------hCCCCChhhHHHHHHHHHHHH
Q 036937 127 NRLIDYMLEQGITPYANLYHYDM-----PLALQEK------------------------YGGLLDCQVVKDYADYADFCF 177 (497)
Q Consensus 127 ~~~i~~l~~~gi~p~vtL~H~~~-----P~~l~~~------------------------~ggw~~~~~~~~f~~ya~~~~ 177 (497)
+.+|++|+++|++.++.++-+-. |..-+.. +=.++||+.++.|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 57999999999998888764422 2221111 013789999999998888776
Q ss_pred HHhC-CcceEEEeecCchhhh
Q 036937 178 KTFG-DRVKNWYTFNEPRVIA 197 (497)
Q Consensus 178 ~~~~-d~V~~w~t~NEp~~~~ 197 (497)
...+ +-+-.|+=+|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 5432 2356888899998754
No 128
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=38.66 E-value=49 Score=33.12 Aligned_cols=80 Identities=8% Similarity=0.005 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCCeeeeccccccccccC-CCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhH
Q 036937 88 EDIDLMKNLNFDAYRFSISWSRIFPEG-TGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVV 166 (497)
Q Consensus 88 eDi~l~~~lG~~~~R~si~W~ri~P~~-~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~ 166 (497)
.+++++++.|++.+|+.++=|...-.. .|.--.+.++...+.++.+++.|+++.++..+| .+ +. +..+
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~---~~~~ 150 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GY---KANP 150 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cC---CCCH
Confidence 689999999999999988655443221 133346678889999999999999998877655 11 11 1235
Q ss_pred HHHHHHHHHHHH
Q 036937 167 KDYADYADFCFK 178 (497)
Q Consensus 167 ~~f~~ya~~~~~ 178 (497)
+.+.++++.+.+
T Consensus 151 ~~~~~~~~~~~~ 162 (273)
T cd07941 151 EYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHh
Confidence 556667766654
No 129
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.27 E-value=1.2e+02 Score=31.00 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCC--CeeeeccccccccccC--CC--CCChhhhHHHHHHHHHHHHcCCeeEEEeccC---CCcHHHHHH-
Q 036937 87 KEDIDLMKNLNF--DAYRFSISWSRIFPEG--TG--TVNQKGVDYYNRLIDYMLEQGITPYANLYHY---DMPLALQEK- 156 (497)
Q Consensus 87 ~eDi~l~~~lG~--~~~R~si~W~ri~P~~--~g--~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l~~~- 156 (497)
.+-++.+++.|+ +++=+++.|......+ .| .+|.+-.---+.||+.|+++|++.++.+.-+ +.|..-+-.
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 444555555554 4455555564322211 01 1222222223578899999999888877643 233321100
Q ss_pred --h-------------------C---CCCChhhHHHHHHHHHHHHHHhCCcce-EEEeecCchhh
Q 036937 157 --Y-------------------G---GLLDCQVVKDYADYADFCFKTFGDRVK-NWYTFNEPRVI 196 (497)
Q Consensus 157 --~-------------------g---gw~~~~~~~~f~~ya~~~~~~~~d~V~-~w~t~NEp~~~ 196 (497)
+ + .++||+..+.|.+..+.+ +..-|+ +|+=+|||..+
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~---~~~Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL---IDQGVTGWWGDLGEPEVH 168 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh---hhCCccEEEecCCCcccc
Confidence 0 0 367999999888877665 333444 57778999754
No 130
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=37.85 E-value=1.4e+02 Score=30.92 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
.+|++++.+.|++.+|+....+.. +--.+.|+.+++.|+++.+.+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~-------------d~~~~~i~~ak~~G~~v~~~l~ 135 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA-------------DVSEQHIGMARELGMDTVGFLM 135 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH-------------HHHHHHHHHHHHcCCeEEEEEE
Confidence 689999999999999988755443 1246889999999999988884
No 131
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=37.59 E-value=90 Score=31.71 Aligned_cols=64 Identities=25% Similarity=0.552 Sum_probs=47.4
Q ss_pred chHHHHHHHHHcCCCeeeeccc----ccc---cccc----C--------CCCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 85 RYKEDIDLMKNLNFDAYRFSIS----WSR---IFPE----G--------TGTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~----W~r---i~P~----~--------~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
..++-|+.|+..++|.+.+-++ |+- ..|+ + .|.+.+ +=.+++++.++++||++|.-+
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~viPEi- 92 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVIPEI- 92 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEEEec-
Confidence 4677799999999999988776 522 1222 0 145666 457799999999999988887
Q ss_pred cCCCcHHHH
Q 036937 146 HYDMPLALQ 154 (497)
Q Consensus 146 H~~~P~~l~ 154 (497)
|+|....
T Consensus 93 --D~PGH~~ 99 (303)
T cd02742 93 --DMPGHST 99 (303)
T ss_pred --cchHHHH
Confidence 8887654
No 132
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=37.42 E-value=1.2e+02 Score=34.00 Aligned_cols=93 Identities=11% Similarity=0.080 Sum_probs=58.5
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCc----HHHHHH-----
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMP----LALQEK----- 156 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P----~~l~~~----- 156 (497)
.++|++++.+.|++.+|+..+.+.+ +-....++.++++|+.+.+++.+-+-| ..+.+.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP-------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 3556899999999999999876654 224577788888898888887765555 221110
Q ss_pred -h----------CCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCchh
Q 036937 157 -Y----------GGLLDCQVVKDYADYADFCFKTFGDRVKNWYTFNEPRV 195 (497)
Q Consensus 157 -~----------ggw~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 195 (497)
. .|...|.. ..+.++.+.++++ ..-...+-|-..+
T Consensus 160 ~~Gad~I~i~Dt~G~~~P~~---v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTPKA---AYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred HcCCCEEEECCCCCCcCHHH---HHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 0 35555544 3445555556664 2234666666654
No 133
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=37.16 E-value=84 Score=30.57 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=42.4
Q ss_pred chhhchHHHHHHHHHcCCCeeeeccccccccccCC--CCCChhhhHHHHHHHHHHHHcCCeeEEE-eccCCCc
Q 036937 81 DQYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGT--GTVNQKGVDYYNRLIDYMLEQGITPYAN-LYHYDMP 150 (497)
Q Consensus 81 d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~--g~~n~~~l~~y~~~i~~l~~~gi~p~vt-L~H~~~P 150 (497)
++-+.+++=|+++++||++.+++..... |... .+.....++..+++.+.+.+.||...+= ++|++.|
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 3446677789999999999998644321 1110 1122334566788888889999986663 3444444
No 134
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=36.66 E-value=44 Score=35.84 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCCeeeecc------ccccccccCCCCC--ChhhhHHHHHHHHHHHHcCCeeEEEe
Q 036937 88 EDIDLMKNLNFDAYRFSI------SWSRIFPEGTGTV--NQKGVDYYNRLIDYMLEQGITPYANL 144 (497)
Q Consensus 88 eDi~l~~~lG~~~~R~si------~W~ri~P~~~g~~--n~~~l~~y~~~i~~l~~~gi~p~vtL 144 (497)
+-++.+++||++++=++= ++..--..---.+ ..-.++-.++++++++++||+.|+.+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 667899999999985432 1111111100122 24456778999999999999999988
No 135
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=36.59 E-value=1.1e+02 Score=33.20 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-cccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 036937 87 KEDIDLMKNLNFDAYRFSI-SWS-RIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMP 150 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 150 (497)
+|.+++|+++|++.+-+++ +-+ ++...-.-..+. +.+.+.++.++++||.+.+++. +++|
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~~K~~~~---~~~~~~i~~~~~~Gi~v~~~~I-iGlP 348 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNIKKGLTV---EIARRFTRDCHKLGIKVHGTFI-LGLP 348 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHhcCCCCH---HHHHHHHHHHHHCCCeEEEEEE-EeCC
Confidence 5678999999999888888 332 222221011233 5678999999999999887775 3555
No 136
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=36.48 E-value=22 Score=27.45 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=32.0
Q ss_pred ccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCC
Q 036937 108 SRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYD 148 (497)
Q Consensus 108 ~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~ 148 (497)
+++.|.. +.=-.++++..-+++..|.++|| +++.|++-+
T Consensus 19 s~l~p~~-~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE-GADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc-ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 5778887 66668899999999999999999 688777543
No 137
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=36.43 E-value=1.2e+02 Score=31.57 Aligned_cols=109 Identities=26% Similarity=0.435 Sum_probs=56.9
Q ss_pred hhchHHHHHHHHHcCCCeeeecc------------------------------ccccccccCC--CCCCh----hhhHHH
Q 036937 83 YHRYKEDIDLMKNLNFDAYRFSI------------------------------SWSRIFPEGT--GTVNQ----KGVDYY 126 (497)
Q Consensus 83 y~ry~eDi~l~~~lG~~~~R~si------------------------------~W~ri~P~~~--g~~n~----~~l~~y 126 (497)
|.||++.|+.|+=-|||..=--+ .|.|+---.. |.+.. +-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 67899999999999998753221 3444321110 22221 123344
Q ss_pred HHHHHHHHHcCCeeEEEeccCCCcHHHHHHh--------CCC--------CChhhHHHHHHHHHHHH----HHhCCcceE
Q 036937 127 NRLIDYMLEQGITPYANLYHYDMPLALQEKY--------GGL--------LDCQVVKDYADYADFCF----KTFGDRVKN 186 (497)
Q Consensus 127 ~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~--------ggw--------~~~~~~~~f~~ya~~~~----~~~~d~V~~ 186 (497)
+++++++++.||+|++--+---+|..+.+++ +.| ++|. -+.|++.++... +.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~-dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPT-DPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS---HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCC-CchHHHHHHHHHHHHHHhcC-CCce
Confidence 6999999999999999988777899888775 222 2221 145666555544 5677 3444
Q ss_pred EE--eecCc
Q 036937 187 WY--TFNEP 193 (497)
Q Consensus 187 w~--t~NEp 193 (497)
+. +|||-
T Consensus 176 Y~~D~FnE~ 184 (333)
T PF05089_consen 176 YAADPFNEG 184 (333)
T ss_dssp EE--TTTTS
T ss_pred eCCCccCCC
Confidence 43 46874
No 138
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=36.22 E-value=42 Score=38.18 Aligned_cols=64 Identities=23% Similarity=0.475 Sum_probs=43.6
Q ss_pred hhchHHH-HHHHHHcCCCeeeecc---------cccc-----ccccCC-CCCC-hhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 83 YHRYKED-IDLMKNLNFDAYRFSI---------SWSR-----IFPEGT-GTVN-QKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 83 y~ry~eD-i~l~~~lG~~~~R~si---------~W~r-----i~P~~~-g~~n-~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
|.-+.|+ +..+|+||.|++.+=- +|.= .-|... |..+ +.-+.=.+.||++|...||++++.+.
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s~~ri~efK~lVd~aHs~GI~VlLDVV 332 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPESPCRINEFKELVDKAHSLGIEVLLDVV 332 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCcccchHHHHHHHHHHhhCCcEEehhhh
Confidence 8888888 9999999999987311 2211 122221 3333 11133489999999999999999887
Q ss_pred c
Q 036937 146 H 146 (497)
Q Consensus 146 H 146 (497)
|
T Consensus 333 ~ 333 (757)
T KOG0470|consen 333 H 333 (757)
T ss_pred h
Confidence 6
No 139
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=36.20 E-value=2e+02 Score=30.08 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccC---CCCCChhhhHHHHHHHHHHHHcCCe-eEEEeccCCCcHHHHHHhCCCCC
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEG---TGTVNQKGVDYYNRLIDYMLEQGIT-PYANLYHYDMPLALQEKYGGLLD 162 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~---~g~~n~~~l~~y~~~i~~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw~~ 162 (497)
++.++.|+++|+|.+.+++ .-+-++- -|+.. ..+-..+.|+.+++.|+. .-+.|. +++|.
T Consensus 103 ~~~l~~l~~~G~nrislGv--QS~~~~~L~~l~R~~--~~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg----------- 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGV--QTFDDPLLKLLGRTH--SSSKAIDAVQECSEHGFSNLSIDLI-YGLPT----------- 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEcc--ccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCeEEEEee-cCCCC-----------
Confidence 6889999999999665555 3332221 13221 124466789999999997 445553 56663
Q ss_pred hhhHHHHHHHHHHHHHHhCCcceEEEeecCchhh
Q 036937 163 CQVVKDYADYADFCFKTFGDRVKNWYTFNEPRVI 196 (497)
Q Consensus 163 ~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 196 (497)
++.+.|.+-.+.+.+-=-+.|..+...=||...
T Consensus 167 -qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 -QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred -CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 345556666666654333678878777888753
No 140
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=35.80 E-value=94 Score=31.62 Aligned_cols=72 Identities=13% Similarity=0.072 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecCchhhhcccCCC
Q 036937 124 DYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTFGDRVKNWYTFNEPRVIAALGFDD 203 (497)
Q Consensus 124 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~~~~gy~~ 203 (497)
+-+.+.++.++++||++.+.+. +++|. +..+.+.+=++.+.+-=-+.|+.....-+|+.....-|..
T Consensus 163 ~~~~~ai~~l~~~gi~v~~~lI-~GlPg------------et~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~~ 229 (302)
T TIGR01212 163 ACYVDAVKRARKRGIKVCSHVI-LGLPG------------EDREEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYEK 229 (302)
T ss_pred HHHHHHHHHHHHcCCEEEEeEE-ECCCC------------CCHHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHHc
Confidence 5577899999999999777664 46663 2345566666665543346788888888887655555556
Q ss_pred CCCCC
Q 036937 204 GSNPP 208 (497)
Q Consensus 204 G~~~P 208 (497)
|.|.|
T Consensus 230 g~~~~ 234 (302)
T TIGR01212 230 GELKT 234 (302)
T ss_pred CCCCC
Confidence 66654
No 141
>PLN02389 biotin synthase
Probab=35.29 E-value=1e+02 Score=32.57 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=42.6
Q ss_pred chHHHHHHHHHcCCCeeeecccccc-ccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 85 RYKEDIDLMKNLNFDAYRFSISWSR-IFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~W~r-i~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
.-+|.++.||++|++.|-.+++=++ ++|.-...-+ .+..-+.++.+++.||++..++.
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s---~e~rl~ti~~a~~~Gi~v~sg~I 234 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRS---YDDRLETLEAVREAGISVCSGGI 234 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCC---HHHHHHHHHHHHHcCCeEeEEEE
Confidence 5689999999999999999886222 4444211123 36678999999999999866653
No 142
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=34.45 E-value=78 Score=36.23 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=36.3
Q ss_pred HHHHHHcCCCeeeecccccccc----------------ccCCCCCCh-----hhhHHHHHHHHHHHHcCCeeEEEec
Q 036937 90 IDLMKNLNFDAYRFSISWSRIF----------------PEGTGTVNQ-----KGVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 90 i~l~~~lG~~~~R~si~W~ri~----------------P~~~g~~n~-----~~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
|+-+|+|||+++=+.=-=.-.. |..--.++. ..++=+++||++|+++||++|+.+.
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 7889999999997654211110 000001111 1245689999999999999999875
No 143
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=34.14 E-value=1.5e+02 Score=29.97 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=54.2
Q ss_pred HHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCC----cHHHHHHhCCCCChhh
Q 036937 90 IDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDM----PLALQEKYGGLLDCQV 165 (497)
Q Consensus 90 i~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~----P~~l~~~~ggw~~~~~ 165 (497)
.+.++.-+-+.=-++..|-.|-|++. +.. ....++++.++++|+++++++..++- +.-+.. --.+++.
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g~--~~~---~~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~~ 87 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADGT--LTG---LPDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPEA 87 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCCC--CCC---CCCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHHH
Confidence 56666666666667888999988753 332 22358999999999999999976541 111111 1245666
Q ss_pred HHHHHHHHHHHHHHhC
Q 036937 166 VKDYADYADFCFKTFG 181 (497)
Q Consensus 166 ~~~f~~ya~~~~~~~~ 181 (497)
.+.|++=+-.+++++|
T Consensus 88 r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 88 RQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 6777666666666653
No 144
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=33.16 E-value=1.3e+02 Score=31.16 Aligned_cols=60 Identities=15% Similarity=0.287 Sum_probs=49.8
Q ss_pred HHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcH
Q 036937 89 DIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPL 151 (497)
Q Consensus 89 Di~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 151 (497)
+.+.+|++|.+++.|=+=|.- ++.-.+|..-.++.+++.++|++.+|-=++=+.-+|.+.
T Consensus 111 s~~rike~GadavK~Llyy~p---D~~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYDV---DDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeCC---CCChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 378899999999999887753 332458888889999999999999999999888776654
No 145
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.00 E-value=1.6e+02 Score=29.54 Aligned_cols=70 Identities=11% Similarity=0.012 Sum_probs=50.3
Q ss_pred CCchhhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcH
Q 036937 79 TVDQYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPL 151 (497)
Q Consensus 79 a~d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 151 (497)
+.+..+...+-.+.+|++|+..+|-+..=+|--|...-.+ +.+.++.+-+.+++.||..+.+.++-..+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~---g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~ 105 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGL---GEEGLKILKEVGDKYNLPVVTEVMDTRDVE 105 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCc---HHHHHHHHHHHHHHcCCCEEEeeCChhhHH
Confidence 3456777788889999999999999986677766542112 235566777778999999888886543333
No 146
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=32.98 E-value=1.5e+02 Score=26.45 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCCeeEEEeccCCCc---HHHHHHhCCCCChhhHHHHHHHHHHHHHHhCCcc
Q 036937 124 DYYNRLIDYMLEQGITPYANLYHYDMP---LALQEKYGGLLDCQVVKDYADYADFCFKTFGDRV 184 (497)
Q Consensus 124 ~~y~~~i~~l~~~gi~p~vtL~H~~~P---~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V 184 (497)
+=+.-+++.|++.|++|++.+. | .|.. |-| .+++..+.|.+=.+.++++.|=.|
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~----PvNg~wyd--ytG-~~~~~r~~~y~kI~~~~~~~gf~v 92 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQ----PVNGKWYD--YTG-LSKEMRQEYYKKIKYQLKSQGFNV 92 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--------HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--E
T ss_pred HHHHHHHHHHHHcCCceEEEec----CCcHHHHH--HhC-CCHHHHHHHHHHHHHHHHHCCCEE
Confidence 3357899999999999999994 5 4443 345 356777777777777788877643
No 147
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=32.61 E-value=32 Score=25.89 Aligned_cols=35 Identities=9% Similarity=0.101 Sum_probs=25.5
Q ss_pred HHHHHHHH-HcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHH
Q 036937 127 NRLIDYML-EQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADY 172 (497)
Q Consensus 127 ~~~i~~l~-~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~y 172 (497)
+++++.|. ..+|+|.+|. ..|-.-+ ++.++.|..|
T Consensus 16 ~E~v~~L~~~a~I~P~~T~-----~VW~~Le------~eN~eFF~aY 51 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTS-----TVWQKLE------KENPEFFKAY 51 (54)
T ss_pred HHHHHHHHHHcCCChHHHH-----HHHHHHH------HHCHHHHHHh
Confidence 47888885 5699999988 4675543 5677777776
No 148
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=32.14 E-value=1.3e+02 Score=29.35 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHhC
Q 036937 123 VDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTFG 181 (497)
Q Consensus 123 l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~ 181 (497)
++...+.|..|+++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 3556789999999999999999755543221 012455556666666666666664
No 149
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=31.64 E-value=1.3e+02 Score=29.59 Aligned_cols=72 Identities=14% Similarity=0.051 Sum_probs=42.7
Q ss_pred ccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHh
Q 036937 104 SISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTF 180 (497)
Q Consensus 104 si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 180 (497)
.+.|..+.++|.-.... .......+++.++++|+++++++-.+....... -..+++..+.|++=+-..++++
T Consensus 27 ~~~f~~i~~~G~l~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~ 98 (253)
T cd06545 27 NLAFANPDANGTLNANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSY 98 (253)
T ss_pred EEEEEEECCCCeEEecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHh
Confidence 34466665554211110 113467889999999999999997665443221 1245666777766555555555
No 150
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=31.64 E-value=3.5e+02 Score=25.05 Aligned_cols=18 Identities=11% Similarity=-0.077 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhCCc
Q 036937 166 VKDYADYADFCFKTFGDR 183 (497)
Q Consensus 166 ~~~f~~ya~~~~~~~~d~ 183 (497)
.+....|++.+-++.|-+
T Consensus 102 ~~~~~~f~~~v~~~~G~~ 119 (184)
T cd06525 102 NDYVLRFIEEFEKLSGLK 119 (184)
T ss_pred HHHHHHHHHHHHHHHCCC
Confidence 445555555555554443
No 151
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=30.95 E-value=4.6e+02 Score=28.10 Aligned_cols=89 Identities=17% Similarity=0.263 Sum_probs=55.7
Q ss_pred hHHHHHHHHHcCCCeeeecc--ccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeE-EEeccCCCcHH--HHHHhCCC
Q 036937 86 YKEDIDLMKNLNFDAYRFSI--SWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPY-ANLYHYDMPLA--LQEKYGGL 160 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si--~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~--l~~~~ggw 160 (497)
-.+|+..+++|.--.-|+++ .|.. +|.+.|+ +.++++||..- +...-|..|+. -.=++|..
T Consensus 72 ~i~D~~~v~~Lt~~~~~v~LH~~wd~--------vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSL 137 (412)
T TIGR02629 72 KLEDCAVIQQLTRATPNVSLHIPWDK--------ADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSL 137 (412)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCCc--------CCHHHHH------HHHHHcCCccceeccccccCccccccccccccc
Confidence 37889999988877777776 7822 3554444 88999999977 65555666632 11123667
Q ss_pred CCh--hhHHHHHHHHHHH---HHHhCCc-ceEEE
Q 036937 161 LDC--QVVKDYADYADFC---FKTFGDR-VKNWY 188 (497)
Q Consensus 161 ~~~--~~~~~f~~ya~~~---~~~~~d~-V~~w~ 188 (497)
.|| .+.+...+-+..| .+.+|.. |+.|+
T Consensus 138 tnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 138 SHTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 765 5556666655554 4566653 34443
No 152
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=30.59 E-value=1.4e+02 Score=29.22 Aligned_cols=66 Identities=20% Similarity=0.490 Sum_probs=45.5
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChh
Q 036937 85 RYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQ 164 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~ 164 (497)
.-+.=|+||++||.+++.| +|.+ |- +-++-|..+-+.|.++|+. |+.- ||..
T Consensus 136 ~vetAiaml~dmG~~SiKf-------fPM~-Gl---~~leE~~avA~aca~~g~~-------------lEPT-GGId--- 187 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKF-------FPMG-GL---KHLEEYAAVAKACAKHGFY-------------LEPT-GGID--- 187 (236)
T ss_pred eHHHHHHHHHHcCCCeeeE-------eecC-Cc---ccHHHHHHHHHHHHHcCCc-------------cCCC-CCcc---
Confidence 4567799999999999976 6776 52 3335577888888888872 2222 6653
Q ss_pred hHHHHHHHHHHHHHH
Q 036937 165 VVKDYADYADFCFKT 179 (497)
Q Consensus 165 ~~~~f~~ya~~~~~~ 179 (497)
.+.|....+.|.+.
T Consensus 188 -l~Nf~~I~~i~lda 201 (236)
T TIGR03581 188 -LDNFEEIVQIALDA 201 (236)
T ss_pred -HHhHHHHHHHHHHc
Confidence 55667777777654
No 153
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=29.43 E-value=2.1e+02 Score=33.14 Aligned_cols=105 Identities=16% Similarity=0.255 Sum_probs=64.5
Q ss_pred HHHHHHHHcCCC--eeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec---cCCCc-----------H
Q 036937 88 EDIDLMKNLNFD--AYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY---HYDMP-----------L 151 (497)
Q Consensus 88 eDi~l~~~lG~~--~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---H~~~P-----------~ 151 (497)
+=++.+.++|+. ..=..|.|-.-..+= .+|....-....+++.|+++|++.++++. +-+.. .
T Consensus 315 dvv~~~~~agiPld~~~~DiDyMd~ykDF--Tvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v 392 (805)
T KOG1065|consen 315 DVVENYRAAGIPLDVIVIDIDYMDGYKDF--TVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDV 392 (805)
T ss_pred HHHHHHHHcCCCcceeeeehhhhhcccce--eeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhce
Confidence 336677778876 444444444332222 34444445578999999999999999886 22222 0
Q ss_pred HHHHHh----------CC------CCChhhHHHHHHHHHHHHHHhCCcce---EEEeecCchhhhc
Q 036937 152 ALQEKY----------GG------LLDCQVVKDYADYADFCFKTFGDRVK---NWYTFNEPRVIAA 198 (497)
Q Consensus 152 ~l~~~~----------gg------w~~~~~~~~f~~ya~~~~~~~~d~V~---~w~t~NEp~~~~~ 198 (497)
++...+ -| ++|+..++++.+ .+++|.+.|. +|+-.|||..++.
T Consensus 393 ~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~----~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 393 LIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLD----ELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eeecccCchhhhcccCCCcccccccCCchHHHHHHH----HHHhhcccCCccceEEECCCcccCCC
Confidence 010000 12 677766665543 4558888775 8999999987653
No 154
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=29.36 E-value=58 Score=24.83 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=26.3
Q ss_pred HHHHHHHHH-cCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHH
Q 036937 127 NRLIDYMLE-QGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYA 173 (497)
Q Consensus 127 ~~~i~~l~~-~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya 173 (497)
+++++.|.+ .||+|.+|. ..|-.-. ++.++.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~-----~VW~~Le------keN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTR-----FVWYLLE------KENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHH-----HHHHHHH------HHHHHHHHHHh
Confidence 467777666 799999987 4676543 57788888773
No 155
>PTZ00445 p36-lilke protein; Provisional
Probab=29.34 E-value=1.1e+02 Score=29.72 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=41.5
Q ss_pred HHHHHHcCCCeeeeccccccccc-cCCCCCChh---------hhHHHHHHHHHHHHcCCeeEEEec
Q 036937 90 IDLMKNLNFDAYRFSISWSRIFP-EGTGTVNQK---------GVDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 90 i~l~~~lG~~~~R~si~W~ri~P-~~~g~~n~~---------~l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
++++++.|++++=+.++=+-|-- .| |.+++. +-.....++.+|+++||..+|..+
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hsg-G~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHSG-GYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhcc-cccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 68899999999999888776642 23 444443 334578899999999999888775
No 156
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=28.54 E-value=1.7e+02 Score=29.76 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=46.7
Q ss_pred chHHHHHHHHHcCCCeeeeccc----cccccccC---CCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHH
Q 036937 85 RYKEDIDLMKNLNFDAYRFSIS----WSRIFPEG---TGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQE 155 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~----W~ri~P~~---~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~ 155 (497)
-.++=|++|+.+|+|.+-+=++ +.. .|.- .|.+.. +=++++++.++++||+++..+ |+|..+..
T Consensus 18 ~lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~~yT~---~ei~ei~~yA~~~gI~vIPei---d~pGH~~~ 88 (301)
T cd06565 18 YLKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRGAYTK---EEIREIDDYAAELGIEVIPLI---QTLGHLEF 88 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCCCcCH---HHHHHHHHHHHHcCCEEEecC---CCHHHHHH
Confidence 4677899999999999987443 221 1221 156666 446799999999999999887 78876653
No 157
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=28.33 E-value=3e+02 Score=28.30 Aligned_cols=67 Identities=19% Similarity=0.194 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCeeEEEeccC-----CCcHHHHHH---h---------------------CCCCChhhHHHHHHHHHHHH
Q 036937 127 NRLIDYMLEQGITPYANLYHY-----DMPLALQEK---Y---------------------GGLLDCQVVKDYADYADFCF 177 (497)
Q Consensus 127 ~~~i~~l~~~gi~p~vtL~H~-----~~P~~l~~~---~---------------------ggw~~~~~~~~f~~ya~~~~ 177 (497)
..||++|+++|++.++.+.-+ +.|..-+.. | -.|+||+..+.|.+.-+.++
T Consensus 67 ~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06604 67 KELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 689999999999987655422 122222111 0 14788999998877666554
Q ss_pred HHhCCcc-eEEEeecCchhh
Q 036937 178 KTFGDRV-KNWYTFNEPRVI 196 (497)
Q Consensus 178 ~~~~d~V-~~w~t~NEp~~~ 196 (497)
..-| -+|+=+|||..+
T Consensus 147 ---~~Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 147 ---DLGVDGIWNDMNEPAVF 163 (339)
T ss_pred ---hCCCceEeecCCCcccc
Confidence 2334 466778999865
No 158
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=28.31 E-value=1.9e+02 Score=34.78 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=48.6
Q ss_pred CCcEEEeecCCCCCCCCCcCcccCChhHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccccC---C-----CCCCcc-
Q 036937 398 NPIVMLSENGMDDPSNYTVNHLLHDTTRVNYYRDYISQLKKAVDDGANVTGYFAWSLLDNFEWL---L-----GYSSRF- 468 (497)
Q Consensus 398 ~~pI~ITENG~~~~~~~~~~g~i~D~~Ri~yl~~hl~~v~~Ai~~Gv~V~GY~~WSl~Dn~EW~---~-----Gy~~Rf- 468 (497)
..|++++|.|.+..+.. |. + ++-..++++-=.+.|=|+|..+|-=-.. + +|---|
T Consensus 505 ~kP~i~~Ey~hamgn~~---g~---------~----~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~g 568 (1021)
T PRK10340 505 PKPRILCEYAHAMGNGP---GG---------L----TEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDYG 568 (1021)
T ss_pred CCcEEEEchHhccCCCC---CC---------H----HHHHHHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCCCC
Confidence 46899999998764311 11 2 2333466667889999999999931110 1 122222
Q ss_pred -----------ceEEEcCCCCCccccchHHHHHHHHh
Q 036937 469 -----------GITYVDFDTLKRTPKMSAYWFKQLLQ 494 (497)
Q Consensus 469 -----------GL~~VD~~~~~R~pK~Sa~~y~~ii~ 494 (497)
||+. ..|+||++++.||++.+
T Consensus 569 ~~p~~~~f~~~Glv~-----~dr~p~p~~~e~k~~~~ 600 (1021)
T PRK10340 569 DYPNNYNFCIDGLIY-----PDQTPGPGLKEYKQVIA 600 (1021)
T ss_pred CCCCCcCcccceeEC-----CCCCCChhHHHHHHhcc
Confidence 3432 35899999999999875
No 159
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.05 E-value=85 Score=30.88 Aligned_cols=60 Identities=13% Similarity=0.166 Sum_probs=39.7
Q ss_pred chhhchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeE
Q 036937 81 DQYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPY 141 (497)
Q Consensus 81 d~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~ 141 (497)
....+++.=|++++.||++.+++........+.. ...-...++.++.+.+.+.++||+..
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~a~~~gv~l~ 146 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-NVIWGRLAENLSELCEYAENIGMDLI 146 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 3556777888999999999999864322111111 11113455678888999999998643
No 160
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=27.82 E-value=3.2e+02 Score=24.63 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=38.0
Q ss_pred hHHHHHHHHHcCCCeeeeccc-ccccccc-CCCCCChhhhHHHHHHHHHHHHcC-CeeEEEe
Q 036937 86 YKEDIDLMKNLNFDAYRFSIS-WSRIFPE-GTGTVNQKGVDYYNRLIDYMLEQG-ITPYANL 144 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~-W~ri~P~-~~g~~n~~~l~~y~~~i~~l~~~g-i~p~vtL 144 (497)
-++.++.|+++|++.+.+|++ ++.=.-+ -....+ .+.+.+.|+.+++.| +.+.+.+
T Consensus 99 ~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 99 TEELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CHHHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 368899999999999999995 5432111 101122 267888999999999 6655444
No 161
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.72 E-value=4.5e+02 Score=25.80 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=35.4
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeE
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPY 141 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~ 141 (497)
+.+-+++++++|++.+=+++.=....+.. ..++. ...+.+-+.+.++||++.
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~~~~~---~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLAR-LDWSR---EQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhc-cCCCH---HHHHHHHHHHHHcCCcee
Confidence 68899999999999998865311111121 12333 346678888999999964
No 162
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=27.29 E-value=2.1e+02 Score=29.51 Aligned_cols=64 Identities=25% Similarity=0.484 Sum_probs=46.3
Q ss_pred chHHHHHHHHHcCCCeeeeccc----c-------ccccccC---------CCCCChhhhHHHHHHHHHHHHcCCeeEEEe
Q 036937 85 RYKEDIDLMKNLNFDAYRFSIS----W-------SRIFPEG---------TGTVNQKGVDYYNRLIDYMLEQGITPYANL 144 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~----W-------~ri~P~~---------~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 144 (497)
..++-|+.|+..++|.+-+-++ | +.+-..+ .|.+.. +=++++++.++++||++|.-+
T Consensus 19 ~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~---~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 19 EVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQ---EDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCH---HHHHHHHHHHHHcCCEEEEec
Confidence 4677799999999999887773 3 2222111 023444 457799999999999998888
Q ss_pred ccCCCcHHHH
Q 036937 145 YHYDMPLALQ 154 (497)
Q Consensus 145 ~H~~~P~~l~ 154 (497)
|+|....
T Consensus 96 ---D~PGH~~ 102 (329)
T cd06568 96 ---DMPGHTN 102 (329)
T ss_pred ---CCcHHHH
Confidence 8997654
No 163
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=27.20 E-value=73 Score=29.32 Aligned_cols=61 Identities=18% Similarity=0.093 Sum_probs=40.4
Q ss_pred hhhchHHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEE
Q 036937 82 QYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYA 142 (497)
Q Consensus 82 ~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~v 142 (497)
.....++-+++++.||++.+++...+-...+... ..--...++.++.+.+.+.++|+++.+
T Consensus 69 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 69 ALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 4567888999999999999999976411111110 011123456778888888999986444
No 164
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=27.19 E-value=1.5e+02 Score=33.38 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHcCCeeEEEec
Q 036937 123 VDYYNRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 123 l~~y~~~i~~l~~~gi~p~vtL~ 145 (497)
++=+++||++|+++||++|+.+.
T Consensus 228 ~~efk~lV~~~H~~Gi~VilDvV 250 (605)
T TIGR02104 228 IRELKQMIQALHENGIRVIMDVV 250 (605)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 35689999999999999999875
No 165
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=27.05 E-value=5e+02 Score=25.36 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=36.8
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEE
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYA 142 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v 142 (497)
++|-++.++++|++.+=+++.=.+..+.. ..++. +....+-+.|.++||+...
T Consensus 18 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~-~~~~~---~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 18 WEERLVFAKELGFDFVEMSVDESDERLAR-LDWSK---EERLSLVKAIYETGVRIPS 70 (284)
T ss_pred HHHHHHHHHHcCCCeEEEecCCccccccc-ccCCH---HHHHHHHHHHHHcCCCceE
Confidence 68889999999999999876421111111 23444 3456788899999999653
No 166
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=26.88 E-value=1.5e+02 Score=28.62 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=35.4
Q ss_pred HHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEe
Q 036937 91 DLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANL 144 (497)
Q Consensus 91 ~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 144 (497)
+++|++|++.+=++-|=.| +.+. | -.+-+..++++||+|++|.
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~Et----d------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKLA----D------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCcc----H------HHHHHHHHHHCCCEEEEEE
Confidence 8999999999988887777 3332 2 3577889999999999999
No 167
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=26.76 E-value=83 Score=31.86 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=29.6
Q ss_pred CcEEEeecCCCCCCCC--------C-----------cCcccCChhHHHHHHHHHHHHHH
Q 036937 399 PIVMLSENGMDDPSNY--------T-----------VNHLLHDTTRVNYYRDYISQLKK 438 (497)
Q Consensus 399 ~pI~ITENG~~~~~~~--------~-----------~~g~i~D~~Ri~yl~~hl~~v~~ 438 (497)
+||..||-||+.-|.. + .+|..+|.-..+||+.+|..-..
T Consensus 207 KpIwftE~GcpavDkgtNqPNvF~DpkSsEs~~P~~S~g~rDd~~Qr~~lea~~~~w~~ 265 (299)
T PF13547_consen 207 KPIWFTEYGCPAVDKGTNQPNVFLDPKSSESALPYFSNGARDDLIQRRYLEATLGYWDD 265 (299)
T ss_pred cceEEEecCCchhcCcCCCCccccCcccccccCCCCCCCCccHHHHHHHHHHHHHHhcC
Confidence 5899999999865541 1 14778888888888888776653
No 168
>PRK01060 endonuclease IV; Provisional
Probab=26.39 E-value=2.5e+02 Score=27.61 Aligned_cols=50 Identities=8% Similarity=0.116 Sum_probs=37.1
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCee
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITP 140 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p 140 (497)
+++=++.++++|++.+-+.+.-++.... +..+. +..+.+-+.+.++||+.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~~~~~---~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--KPLEE---LNIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--CCCCH---HHHHHHHHHHHHcCCCC
Confidence 6788999999999999998876655432 34555 33456667788999984
No 169
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.33 E-value=3.9e+02 Score=27.08 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=32.2
Q ss_pred cccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccC
Q 036937 109 RIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHY 147 (497)
Q Consensus 109 ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~ 147 (497)
+..|...|-++.+-+..++++.+.++++|-..++=|.|-
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 62 KGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred cCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 334443367888999999999999999999999999984
No 170
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=26.14 E-value=2.4e+02 Score=29.93 Aligned_cols=87 Identities=22% Similarity=0.350 Sum_probs=56.4
Q ss_pred CCCchhhchHHHHHHHHHc-CCCeeeecc--ccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeE-EEeccCCCcHHH
Q 036937 78 VTVDQYHRYKEDIDLMKNL-NFDAYRFSI--SWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPY-ANLYHYDMPLAL 153 (497)
Q Consensus 78 ~a~d~y~ry~eDi~l~~~l-G~~~~R~si--~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l 153 (497)
.+.+-.++ .+|++.+++| ++. .++++ .|+.+ ..+.++.+.++++||+.. ++...|..|.+
T Consensus 35 ~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH~~~d~~-------------~d~~~~~~~l~~~GL~v~~i~p~~f~~~~~- 98 (378)
T TIGR02635 35 AARNVFEK-IEDAALVHRLTGIC-PTVALHIPWDRV-------------EDYEELARYAEELGLKIGAINPNLFQDDDY- 98 (378)
T ss_pred CCCCHHHH-HHHHHHHHhhcCCC-CceeeccCCccc-------------cCHHHHHHHHHHcCCceeeeeCCccCCccc-
Confidence 34333333 7888888888 555 66666 34111 236788888999999987 77766656644
Q ss_pred HHHhCCCCCh--hhHHHHHHHHHHHH---HHhCC
Q 036937 154 QEKYGGLLDC--QVVKDYADYADFCF---KTFGD 182 (497)
Q Consensus 154 ~~~~ggw~~~--~~~~~f~~ya~~~~---~~~~d 182 (497)
++|.++|| ++.+...++++.|. +.+|.
T Consensus 99 --~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa 130 (378)
T TIGR02635 99 --KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGS 130 (378)
T ss_pred --CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 23677765 55566667766654 66666
No 171
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=26.05 E-value=1.4e+02 Score=28.71 Aligned_cols=75 Identities=13% Similarity=0.119 Sum_probs=52.0
Q ss_pred HHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHH
Q 036937 91 DLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDY 169 (497)
Q Consensus 91 ~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f 169 (497)
+.+++.|++.+|+.++=+....... +.--.+.++...++++.+++.|++..+++-+.. +..++.+
T Consensus 74 ~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~--------------~~~~~~~ 139 (237)
T PF00682_consen 74 EAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS--------------RTDPEEL 139 (237)
T ss_dssp HHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG--------------GSSHHHH
T ss_pred HhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc--------------cccHHHH
Confidence 3455799999999987665433321 444456778889999999999999987774421 2234566
Q ss_pred HHHHHHHHHH
Q 036937 170 ADYADFCFKT 179 (497)
Q Consensus 170 ~~ya~~~~~~ 179 (497)
.++++.+.+.
T Consensus 140 ~~~~~~~~~~ 149 (237)
T PF00682_consen 140 LELAEALAEA 149 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777777655
No 172
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=26.01 E-value=2e+02 Score=30.18 Aligned_cols=53 Identities=17% Similarity=0.157 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHH
Q 036937 124 DYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFC 176 (497)
Q Consensus 124 ~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~ 176 (497)
+..+.+++.++++|+..=+..+|-.++.-+.++||+-+.+..++--.++++.+
T Consensus 117 ~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~l 169 (360)
T PRK00366 117 ERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKIL 169 (360)
T ss_pred HHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999987656566777777777765
No 173
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=25.99 E-value=93 Score=30.91 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=52.1
Q ss_pred HHHHHHHHHcC----CCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCC
Q 036937 87 KEDIDLMKNLN----FDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLL 161 (497)
Q Consensus 87 ~eDi~l~~~lG----~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 161 (497)
.+|++++.+.| ++.+|+.++-+.+.-... +.--.+.++-..++++.+++.|++..+++ |. .+-
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~-----~~------~~~- 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA-----ED------ATR- 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee-----ec------CCC-
Confidence 78999999999 999999876655432211 32233467778899999999999877554 21 221
Q ss_pred ChhhHHHHHHHHHHHHH
Q 036937 162 DCQVVKDYADYADFCFK 178 (497)
Q Consensus 162 ~~~~~~~f~~ya~~~~~ 178 (497)
..++.+.+.++.+.+
T Consensus 140 --~~~~~~~~~~~~~~~ 154 (268)
T cd07940 140 --TDLDFLIEVVEAAIE 154 (268)
T ss_pred --CCHHHHHHHHHHHHH
Confidence 235556667766643
No 174
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.92 E-value=2.4e+02 Score=28.87 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCeeEEEeccCCC---cHHHHHHh-------------------------CCCCChhhHHHHHHHHHHHH
Q 036937 126 YNRLIDYMLEQGITPYANLYHYDM---PLALQEKY-------------------------GGLLDCQVVKDYADYADFCF 177 (497)
Q Consensus 126 y~~~i~~l~~~gi~p~vtL~H~~~---P~~l~~~~-------------------------ggw~~~~~~~~f~~ya~~~~ 177 (497)
-++||++|+++|++.++.++-+-. |..-+-.- =.++||+..+.|.+..+..+
T Consensus 75 p~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 154 (317)
T cd06599 75 PAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEAL 154 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHH
Confidence 358889999999998887653322 22111000 02478888888887765544
Q ss_pred HHhCCcceEEEeecCchh
Q 036937 178 KTFGDRVKNWYTFNEPRV 195 (497)
Q Consensus 178 ~~~~d~V~~w~t~NEp~~ 195 (497)
...|= .-+|+=+|||.+
T Consensus 155 ~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 155 LDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred hcCCC-cEEEecCCCCcc
Confidence 44432 356777899974
No 175
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=25.59 E-value=1.5e+02 Score=29.91 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=45.0
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHh
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKY 157 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ 157 (497)
.++=+++++++||+.+.+..- +.=+++.+++|+++++.+.+++| ||.+|--..|.=++.-|
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~---------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTy 168 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM---------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTY 168 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-----------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCS
T ss_pred HHHHHHHHHHcCCCEEeeCcC---------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccC
Confidence 366689999999999998751 22478999999999999999988 88988766776665433
No 176
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=25.51 E-value=2.1e+02 Score=22.83 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=31.9
Q ss_pred HHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEe
Q 036937 91 DLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANL 144 (497)
Q Consensus 91 ~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 144 (497)
+.++.+|+..+|-| . +..+.+-.+++++.|+ .|....+|.
T Consensus 27 ~~~~~~G~~~iRGS-------s------~rgg~~Alr~~~~~lk-~G~~~~itp 66 (74)
T PF04028_consen 27 RVLERFGFRTIRGS-------S------SRGGARALREMLRALK-EGYSIAITP 66 (74)
T ss_pred HHHHHcCCCeEEeC-------C------CCcHHHHHHHHHHHHH-CCCeEEEeC
Confidence 67899999999999 1 2345677889999999 788777776
No 177
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.14 E-value=1.2e+02 Score=29.94 Aligned_cols=60 Identities=8% Similarity=0.129 Sum_probs=38.9
Q ss_pred hhhchHHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEE
Q 036937 82 QYHRYKEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYAN 143 (497)
Q Consensus 82 ~y~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vt 143 (497)
.-.++++=++++++||++.++++-. +..+.+. .+.-...++.++++.+.+.++||...+=
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 4456788899999999999998531 1111110 0111234567778888899999975553
No 178
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=24.71 E-value=2.4e+02 Score=30.44 Aligned_cols=61 Identities=16% Similarity=0.319 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCCeeeeccc-cc-cccccCCCCCChhhhHHHHHHHHHHHHcCC-eeEEEeccCCCcH
Q 036937 87 KEDIDLMKNLNFDAYRFSIS-WS-RIFPEGTGTVNQKGVDYYNRLIDYMLEQGI-TPYANLYHYDMPL 151 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~-W~-ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi-~p~vtL~H~~~P~ 151 (497)
+|.+++|+++|++.+.++++ =+ .+...-....+. +-..+.|+.+++.|| .+.++| -+++|.
T Consensus 151 ~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~---~~~~~ai~~l~~~G~~~v~~dl-i~GlPg 214 (453)
T PRK09249 151 LEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQPF---EFTFALVEAARELGFTSINIDL-IYGLPK 214 (453)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCCCH---HHHHHHHHHHHHcCCCcEEEEE-EccCCC
Confidence 68899999999997777772 22 122111022233 556788999999999 444555 356663
No 179
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=24.55 E-value=2.9e+02 Score=27.18 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=38.5
Q ss_pred hchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHc-CCeeEE
Q 036937 84 HRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQ-GITPYA 142 (497)
Q Consensus 84 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~-gi~p~v 142 (497)
..+++-+++++++|++.+=+.+......+.. ..+. +..+.+.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR--PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC--CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 5679999999999999998888766544433 1234 4466777777787 666444
No 180
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.49 E-value=2.4e+02 Score=28.42 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCeeEEEeccC-CC-c---HH--HHHHh-----------CCCCChhhHHHHHHHHHHHHHHhCCcce-E
Q 036937 126 YNRLIDYMLEQGITPYANLYHY-DM-P---LA--LQEKY-----------GGLLDCQVVKDYADYADFCFKTFGDRVK-N 186 (497)
Q Consensus 126 y~~~i~~l~~~gi~p~vtL~H~-~~-P---~~--l~~~~-----------ggw~~~~~~~~f~~ya~~~~~~~~d~V~-~ 186 (497)
...||++|+++|++.++.++-. .. | .. +.... ..++||+..+.|-+-....+... .|+ +
T Consensus 76 p~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~--Gidg~ 153 (292)
T cd06595 76 PEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQ--GVDFW 153 (292)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhc--CCcEE
Confidence 4689999999999988877532 11 1 11 11111 23677777765544333333333 344 6
Q ss_pred EEeecCchhh
Q 036937 187 WYTFNEPRVI 196 (497)
Q Consensus 187 w~t~NEp~~~ 196 (497)
|.=+|||..+
T Consensus 154 W~D~~E~~~~ 163 (292)
T cd06595 154 WLDWQQGNRT 163 (292)
T ss_pred EecCCCCccc
Confidence 7778999754
No 181
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=24.35 E-value=9.2e+02 Score=26.02 Aligned_cols=71 Identities=15% Similarity=0.331 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHH----HHHHHcCCe-eEEEeccCCCcHHHHHHhCCCC
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLI----DYMLEQGIT-PYANLYHYDMPLALQEKYGGLL 161 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i----~~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw~ 161 (497)
+.=++.|.+||+..|-| -=..|.|++ ....+ ..+-.++++ +.+.+.||+ +++|..-|..|.... |+++
T Consensus 81 daaFef~~kLg~~~~~F--HD~D~~peg-~~~~E-~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~T 153 (434)
T TIGR02630 81 DAAFEFFEKLGVPYYCF--HDRDIAPEG-ASLRE-TNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAAT 153 (434)
T ss_pred HHHHHHHHHhCCCeecc--CccccCCCC-CCHHH-HHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCC
Confidence 34467799999988755 456788887 33322 222334444 445667988 456888899998753 8999
Q ss_pred Chh
Q 036937 162 DCQ 164 (497)
Q Consensus 162 ~~~ 164 (497)
||+
T Consensus 154 nPd 156 (434)
T TIGR02630 154 SPD 156 (434)
T ss_pred CCC
Confidence 875
No 182
>PRK05660 HemN family oxidoreductase; Provisional
Probab=24.25 E-value=3.1e+02 Score=28.72 Aligned_cols=93 Identities=14% Similarity=0.165 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-cccccCCCCCChhhhHHHHHHHHHHHHcCCeeE-EEeccCCCcHHHHHHhCCCCCh
Q 036937 87 KEDIDLMKNLNFDAYRFSI-SWS-RIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPY-ANLYHYDMPLALQEKYGGLLDC 163 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si-~W~-ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~~ 163 (497)
++.++.|+++|++.+-++| +=+ .+...= |+.. ..+-..+.|+.+++.|++++ ++| -+++|.
T Consensus 107 ~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l-~r~~--~~~~~~~ai~~~~~~G~~~v~~dl-i~Glpg------------ 170 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGVQSFSEEKLKRL-GRIH--GPDEAKRAAKLAQGLGLRSFNLDL-MHGLPD------------ 170 (378)
T ss_pred HHHHHHHHHcCCCEEEeccCcCCHHHHHHh-CCCC--CHHHHHHHHHHHHHcCCCeEEEEe-ecCCCC------------
Confidence 5899999999999777777 222 222221 2221 22445678999999999875 555 367774
Q ss_pred hhHHHHHHHHHHHHHHhCCcceEEEeecCchh
Q 036937 164 QVVKDYADYADFCFKTFGDRVKNWYTFNEPRV 195 (497)
Q Consensus 164 ~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~ 195 (497)
++.+.|.+-.+.+.+-=-+.+..+...=||..
T Consensus 171 qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 23444555555554433356666666656653
No 183
>PRK07094 biotin synthase; Provisional
Probab=24.20 E-value=1.5e+02 Score=30.19 Aligned_cols=62 Identities=13% Similarity=0.148 Sum_probs=42.3
Q ss_pred chHHHHHHHHHcCCCeeeeccc-c-ccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 036937 85 RYKEDIDLMKNLNFDAYRFSIS-W-SRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMP 150 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~-W-~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 150 (497)
+-+|.++.|+++|++.+-++++ - .++...=....+ .+-+.+.|+.+++.||.+..++. +++|
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s---~~~~~~~i~~l~~~Gi~v~~~~i-iGlp 190 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHPGMS---FENRIACLKDLKELGYEVGSGFM-VGLP 190 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCC---HHHHHHHHHHHHHcCCeecceEE-EECC
Confidence 3478999999999999999884 2 244433211222 35678899999999998655543 3444
No 184
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=24.13 E-value=2.7e+02 Score=31.33 Aligned_cols=48 Identities=8% Similarity=0.064 Sum_probs=34.4
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEecc
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYH 146 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H 146 (497)
.++|++++++.|++.+|+..+-+.+ +-....++.++++|....+++..
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~i~~ak~~G~~v~~~i~~ 145 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIFDALNDV-------------RNMEVAIKAAKKAGAHVQGTISY 145 (592)
T ss_pred hHHHHHHHHHCCCCEEEEEEecChH-------------HHHHHHHHHHHHcCCEEEEEEEe
Confidence 4567889999999999998876655 12345567777777777766644
No 185
>PRK09389 (R)-citramalate synthase; Provisional
Probab=23.89 E-value=1.2e+02 Score=33.35 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=48.7
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHHHHHcCCeeEEEecc
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDYMLEQGITPYANLYH 146 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H 146 (497)
-++|++.+.+.|++.+++.++-|.+.-... +.--.+.++...+.++.+++.|+++.+++-.
T Consensus 75 ~~~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed 136 (488)
T PRK09389 75 VKVDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGED 136 (488)
T ss_pred CHHHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 489999999999999999998776643321 3344567888889999999999998888753
No 186
>PRK12677 xylose isomerase; Provisional
Probab=23.78 E-value=5.4e+02 Score=27.17 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=44.6
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeE-EEeccCCCcHHHHHHhCCCCCh
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPY-ANLYHYDMPLALQEKYGGLLDC 163 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~-vtL~H~~~P~~l~~~~ggw~~~ 163 (497)
..|-++.++++|+..+=+.. ..+.|-. ....+--+..+++-+.+.++||++. +|...|..|.+- .|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~--~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~---~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG--ATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFK---DGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC--CChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCcccc---CCcCCCC
Confidence 57889999999999986632 2244432 1111111246788888999999955 555545555432 3788875
No 187
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=23.65 E-value=2.3e+02 Score=32.42 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHH
Q 036937 126 YNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFK 178 (497)
Q Consensus 126 y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~ 178 (497)
...+++.++++|+..=+..+|-.++.-+..+||. +..-+++--.+|++.|-+
T Consensus 212 f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~ 263 (733)
T PLN02925 212 FTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 263 (733)
T ss_pred HHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 3459999999999999999999999999999875 556677877788887754
No 188
>PRK10426 alpha-glucosidase; Provisional
Probab=23.53 E-value=6.1e+02 Score=28.82 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=63.3
Q ss_pred chHHHHHHHHHcCCCeeeecc-ccccccccCCC-------CCChhhhHHHHHHHHHHHHcCCeeEEEeccC---CCcHHH
Q 036937 85 RYKEDIDLMKNLNFDAYRFSI-SWSRIFPEGTG-------TVNQKGVDYYNRLIDYMLEQGITPYANLYHY---DMPLAL 153 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si-~W~ri~P~~~g-------~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~---~~P~~l 153 (497)
...+-++.+++.||..==+-| .|.-......| .+|.+-.--.+++|++|++.|++.++.+.=+ +.|..-
T Consensus 222 ~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~ 301 (635)
T PRK10426 222 VVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCE 301 (635)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHH
Confidence 355667888888865443322 57643221101 2344322224789999999999988877532 333332
Q ss_pred HHH---h------C---------------CCCChhhHHHHHHHHHHHHHHhCCcceEE-EeecCc
Q 036937 154 QEK---Y------G---------------GLLDCQVVKDYADYADFCFKTFGDRVKNW-YTFNEP 193 (497)
Q Consensus 154 ~~~---~------g---------------gw~~~~~~~~f~~ya~~~~~~~~d~V~~w-~t~NEp 193 (497)
+.. | | .++||+..+.|.+..+..+...| |+.| .=+||+
T Consensus 302 e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G--vdg~w~D~~E~ 364 (635)
T PRK10426 302 EAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG--CSGWMADFGEY 364 (635)
T ss_pred HHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC--CCEEeeeCCCC
Confidence 211 0 1 27899999999877665444444 6555 668994
No 189
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=23.48 E-value=99 Score=28.14 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=39.3
Q ss_pred CCCCchhhchHHHHHH-HHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCee
Q 036937 77 DVTVDQYHRYKEDIDL-MKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITP 140 (497)
Q Consensus 77 ~~a~d~y~ry~eDi~l-~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p 140 (497)
..+|......++||+. |+++|++.+++.+.|+--.-. ..+..+ --+.|+++||.|
T Consensus 35 y~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt~--d~it~~-------gr~~l~~~giap 90 (146)
T TIGR02159 35 YSGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPWTT--DWITED-------AREKLREYGIAP 90 (146)
T ss_pred CCCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCCh--HHCCHH-------HHHHHHhcCccC
Confidence 3567778888898755 777899999988877643322 345554 456799999987
No 190
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=23.03 E-value=1.6e+02 Score=28.49 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=29.4
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCe
Q 036937 85 RYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGIT 139 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~ 139 (497)
.-+.=++||++||.+++.| +|.+ |. +.++-|+.+-+.|.++||.
T Consensus 136 ~vetAiaml~dmG~~SiKf-------fPm~-Gl---~~leE~~avAkA~a~~g~~ 179 (218)
T PF07071_consen 136 PVETAIAMLKDMGGSSIKF-------FPMG-GL---KHLEELKAVAKACARNGFT 179 (218)
T ss_dssp EHHHHHHHHHHTT--EEEE----------T-TT---TTHHHHHHHHHHHHHCT-E
T ss_pred cHHHHHHHHHHcCCCeeeE-------eecC-Cc---ccHHHHHHHHHHHHHcCce
Confidence 4567799999999999986 7887 53 3345588888999999885
No 191
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=22.43 E-value=1.5e+02 Score=27.01 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCCeeE--EEeccCCCcHHHHHHhCCCCChhhHHHHHHHHHHHHHHhCCcceEEEeecC
Q 036937 124 DYYNRLIDYMLEQGITPY--ANLYHYDMPLALQEKYGGLLDCQVVKDYADYADFCFKTFGDRVKNWYTFNE 192 (497)
Q Consensus 124 ~~y~~~i~~l~~~gi~p~--vtL~H~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NE 192 (497)
+=|+++++.|+..++..- ..+.+=-+|..+..+ -=.-|=...++|..|-+++++-++.+++--.+..|
T Consensus 16 ~EY~rLV~GL~~~~~~~~~d~~~~npvLp~dil~e-aVPGnIR~AeHFv~flkR~veylk~rlrv~~v~~e 85 (146)
T PF06777_consen 16 DEYDRLVEGLREAEIARETDEILANPVLPDDILKE-AVPGNIRRAEHFVAFLKRFVEYLKTRLRVQHVISE 85 (146)
T ss_pred HHHHHHHHHHHHhccccccchhhcCCCCchhhhhh-cCCchHHhHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 359999999999986532 234455567666543 22334455789999999999999998877777777
No 192
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=22.41 E-value=6.6e+02 Score=24.62 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=38.0
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeE
Q 036937 85 RYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPY 141 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~ 141 (497)
-|.|-+++++++|++.+=+++.-....|.. -.++. .....+-+.|.++||++.
T Consensus 17 ~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~-~~~~~---~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFVEMSVDETDDRLSR-LDWSR---EQRLALVNAIIETGVRIP 69 (279)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCccchhhc-cCCCH---HHHHHHHHHHHHcCCCce
Confidence 478999999999999999977554332332 12233 445678889999999864
No 193
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=22.33 E-value=1e+02 Score=26.77 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCeeeeccc-cccc-cccCCCCCChhhhHHHHHHHHHHHHcCCee
Q 036937 87 KEDIDLMKNLNFDAYRFSIS-WSRI-FPEGTGTVNQKGVDYYNRLIDYMLEQGITP 140 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~-W~ri-~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p 140 (497)
++.++.|+++|++.+++|++ -+.- ..+..+ .....+...+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCc
Confidence 89999999999999999994 3332 111101 1123366778999999999996
No 194
>PRK06256 biotin synthase; Validated
Probab=22.15 E-value=1.4e+02 Score=30.53 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=38.7
Q ss_pred chHHHHHHHHHcCCCeeeecc-ccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEe
Q 036937 85 RYKEDIDLMKNLNFDAYRFSI-SWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANL 144 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si-~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 144 (497)
.-+|.++.|+++|++.+-+++ +=.++.+.-....+ .+...+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t---~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHT---YEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCC---HHHHHHHHHHHHHcCCeeccCe
Confidence 447889999999999998877 32233333211122 3557789999999999865443
No 195
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.98 E-value=1.6e+02 Score=29.22 Aligned_cols=58 Identities=9% Similarity=0.070 Sum_probs=40.1
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCC
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYD 148 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~ 148 (497)
..+=++.++++|.+++-+.+..+|....+ .++... -..+-+.+.++++.......|--
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~--~~~~~~---~~~~~~~~~~~~~~~~~i~~Hap 70 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRP--MLEEEV---IDWFKAALETNKNLSQIVLVHAP 70 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCC--CCCHHH---HHHHHHHHHHcCCCCcceeccCC
Confidence 35668999999999999999999887654 344433 33444557888887443455533
No 196
>PRK05474 xylose isomerase; Provisional
Probab=21.96 E-value=3.7e+02 Score=28.98 Aligned_cols=72 Identities=15% Similarity=0.301 Sum_probs=48.1
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHH----HHHHcCCe-eEEEeccCCCcHHHHHHhCCC
Q 036937 86 YKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLID----YMLEQGIT-PYANLYHYDMPLALQEKYGGL 160 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~----~l~~~gi~-p~vtL~H~~~P~~l~~~~ggw 160 (497)
.+-=++.|.+||+..|-| -=..|.|++ .... +..+-.+.+++ .+.+.||+ +++|..-|..|.... |++
T Consensus 81 ~d~afe~~~kLg~~~~~F--HD~D~~peg-~s~~-E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~ 153 (437)
T PRK05474 81 ADAAFEFFTKLGVPYYCF--HDVDVAPEG-ASLK-EYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---GAA 153 (437)
T ss_pred HHHHHHHHHHhCCCeecc--CccccCCCC-CCHH-HHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---CcC
Confidence 444467799999998755 456778887 3332 22233445544 45567888 566888899998753 899
Q ss_pred CChh
Q 036937 161 LDCQ 164 (497)
Q Consensus 161 ~~~~ 164 (497)
+||+
T Consensus 154 Tnpd 157 (437)
T PRK05474 154 TNPD 157 (437)
T ss_pred CCCC
Confidence 9875
No 197
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=21.70 E-value=3.1e+02 Score=29.14 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=64.5
Q ss_pred chHHHHHHHHHcCCCeee--eccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEecc---CCCc---HHHHHH
Q 036937 85 RYKEDIDLMKNLNFDAYR--FSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYH---YDMP---LALQEK 156 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R--~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H---~~~P---~~l~~~ 156 (497)
...+-++.+++.|+..== ++..|..-..+ =.+|.+-..-.+++++.|+++|++.++.++- -+-+ .....+
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~--f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~ 121 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDDYQDGYGD--FTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAK 121 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GGGSBTTBT--T-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHH
T ss_pred HHHHHHHHHHHcCCCccceeccccccccccc--cccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHh
Confidence 456778888887765443 44455552221 2455544445689999999999998877752 2222 111111
Q ss_pred ---h-----CC----------------CCChhhHHHHHHHHHHHHHHhCCcceEEEeecCchhh
Q 036937 157 ---Y-----GG----------------LLDCQVVKDYADYADFCFKTFGDRVKNWYTFNEPRVI 196 (497)
Q Consensus 157 ---~-----gg----------------w~~~~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 196 (497)
+ .| |++++..+.|.+..+.+++.+|= --+|+=+|||..+
T Consensus 122 ~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 184 (441)
T PF01055_consen 122 EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGV-DGWWLDFGEPSSF 184 (441)
T ss_dssp HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTTBSS
T ss_pred hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCC-ceEEeecCCcccc
Confidence 0 12 78899999988877776665432 3567778999864
No 198
>PRK12465 xylose isomerase; Provisional
Probab=21.40 E-value=7.3e+02 Score=26.75 Aligned_cols=74 Identities=11% Similarity=0.257 Sum_probs=47.7
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHH----HHHcCCee-EEEeccCCCcHHHHHHhCC
Q 036937 85 RYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDY----MLEQGITP-YANLYHYDMPLALQEKYGG 159 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~----l~~~gi~p-~vtL~H~~~P~~l~~~~gg 159 (497)
+.+.=++.|.+||+..|-| -=..|.|++ ....+ ..+-.+.+++. +.+.||+. ++|..=|..|.... |+
T Consensus 90 k~daaFEf~~kLG~~~~~F--HD~D~~Peg-~s~~E-~~~nld~iv~~~k~~~~~tGikllw~TaNlFs~prf~~---GA 162 (445)
T PRK12465 90 KSDAAFEFFTKLGVPYYCF--HDIDLAPDA-DDIGE-YESNLKHMVGIAKQRQADTGIKLLWGTANLFSHPRYMN---GA 162 (445)
T ss_pred HHHHHHHHHHHhCCCeeec--cccccCCCC-CCHHH-HHHHHHHHHHHHHHHhhhhCceeeeeccccccCccccC---Cc
Confidence 3444478899999998765 456788887 33322 22233444444 55679985 45666688887653 89
Q ss_pred CCChhh
Q 036937 160 LLDCQV 165 (497)
Q Consensus 160 w~~~~~ 165 (497)
.+||+.
T Consensus 163 ~TnPD~ 168 (445)
T PRK12465 163 STNPDF 168 (445)
T ss_pred CCCCCH
Confidence 998763
No 199
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=21.40 E-value=4.9e+02 Score=27.25 Aligned_cols=93 Identities=10% Similarity=-0.016 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCCCeeeecc-cc-ccccccCCCCC-ChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcHHHHHHhCCCCCh
Q 036937 87 KEDIDLMKNLNFDAYRFSI-SW-SRIFPEGTGTV-NQKGVDYYNRLIDYMLEQGITPYANLYHYDMPLALQEKYGGLLDC 163 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si-~W-~ri~P~~~g~~-n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~~l~~~~ggw~~~ 163 (497)
.+.++.|+++|+|.+.+++ += .++...= |+. +. +-..+.++.+++.++...+.|- +++|..
T Consensus 104 ~e~L~~l~~~GvnrislGvQS~~d~vL~~l-~R~~~~---~~~~~ai~~~~~~~~~v~~dli-~GlPgq----------- 167 (380)
T PRK09057 104 AGRFRGYRAAGVNRVSLGVQALNDADLRFL-GRLHSV---AEALAAIDLAREIFPRVSFDLI-YARPGQ----------- 167 (380)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCCH---HHHHHHHHHHHHhCccEEEEee-cCCCCC-----------
Confidence 4999999999999777777 22 2333221 332 22 3445778888888888888875 577632
Q ss_pred hhHHHHHHHHHHHHHHhCCcceEEEeecCchhh
Q 036937 164 QVVKDYADYADFCFKTFGDRVKNWYTFNEPRVI 196 (497)
Q Consensus 164 ~~~~~f~~ya~~~~~~~~d~V~~w~t~NEp~~~ 196 (497)
+.+.+.+=.+.+.+-=-+.|..+...=||...
T Consensus 168 -t~~~~~~~l~~~~~l~p~~is~y~L~~~~gT~ 199 (380)
T PRK09057 168 -TLAAWRAELKEALSLAADHLSLYQLTIEEGTA 199 (380)
T ss_pred -CHHHHHHHHHHHHhcCCCeEEeecceecCCCh
Confidence 22233333344433223467777777777653
No 200
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=21.05 E-value=1.4e+02 Score=26.59 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHHHHHHHcCCCeeeeccccc-cccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEe
Q 036937 87 KEDIDLMKNLNFDAYRFSISWS-RIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANL 144 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~-ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL 144 (497)
+++++.|+++|+..+.+|++-. ...-.... -....++.+-+.|+.+++.|+...+++
T Consensus 88 ~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~ 145 (204)
T cd01335 88 EELLKELKELGLDGVGVSLDSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTL 145 (204)
T ss_pred HHHHHHHHhCCCceEEEEcccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEE
Confidence 7899999999999999999533 22111100 011223567788888998888866666
No 201
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=20.97 E-value=5.4e+02 Score=26.03 Aligned_cols=58 Identities=17% Similarity=0.280 Sum_probs=39.5
Q ss_pred hHHHHHHHHHcCCCeee-eccc-c-----ccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 036937 86 YKEDIDLMKNLNFDAYR-FSIS-W-----SRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMP 150 (497)
Q Consensus 86 y~eDi~l~~~lG~~~~R-~si~-W-----~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P 150 (497)
.+|.++.||++|++.+- .+.+ - .++.|.. ... +-+.+.++.+++.||++..++. +++|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~---~t~---~~~l~~i~~a~~~Gi~~~s~~i-iG~~ 170 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNK---LSS---DEWLEVIKTAHRLGIPTTATMM-FGHV 170 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCC---CCH---HHHHHHHHHHHHcCCCceeeEE-ecCC
Confidence 47889999999999885 2321 1 1222332 333 5567999999999999887764 4454
No 202
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=20.48 E-value=7.8e+02 Score=25.97 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=44.0
Q ss_pred hchHHHHHHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEE-EeccCCCcHHHHHHhCCCCC
Q 036937 84 HRYKEDIDLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYA-NLYHYDMPLALQEKYGGLLD 162 (497)
Q Consensus 84 ~ry~eDi~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~v-tL~H~~~P~~l~~~~ggw~~ 162 (497)
-...+-++.++++|++.+=| ....+.|-+ -...... ...+++-+.|.++||++.. +..-+..|.+. .|++.+
T Consensus 32 ~~~~e~i~~la~~GfdgVE~--~~~dl~P~~-~~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~---~g~las 104 (382)
T TIGR02631 32 LDPVEAVHKLAELGAYGVTF--HDDDLIPFG-APPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVFK---DGGFTS 104 (382)
T ss_pred cCHHHHHHHHHHhCCCEEEe--cccccCCCC-CChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCcccc---CCCCCC
Confidence 34678899999999999854 334455543 1111111 3366788889999999554 43222223331 267777
Q ss_pred h
Q 036937 163 C 163 (497)
Q Consensus 163 ~ 163 (497)
+
T Consensus 105 ~ 105 (382)
T TIGR02631 105 N 105 (382)
T ss_pred C
Confidence 5
No 203
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=20.46 E-value=2.3e+02 Score=34.36 Aligned_cols=64 Identities=11% Similarity=0.238 Sum_probs=41.4
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccc--------------------------cc-----ccccCCCCCCh----hhhHHH
Q 036937 82 QYHRYKEDIDLMKNLNFDAYRFSISW--------------------------SR-----IFPEGTGTVNQ----KGVDYY 126 (497)
Q Consensus 82 ~y~ry~eDi~l~~~lG~~~~R~si~W--------------------------~r-----i~P~~~g~~n~----~~l~~y 126 (497)
-|.-..+-|+-||+|||+++-+.=-. .- .-|++.-..|+ ..++=+
T Consensus 478 tf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~Ef 557 (1111)
T TIGR02102 478 TFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEF 557 (1111)
T ss_pred CHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHH
Confidence 35556677999999999999765322 10 01111000011 124568
Q ss_pred HHHHHHHHHcCCeeEEEec
Q 036937 127 NRLIDYMLEQGITPYANLY 145 (497)
Q Consensus 127 ~~~i~~l~~~gi~p~vtL~ 145 (497)
++||++|+++||++|+.+.
T Consensus 558 K~LV~alH~~GI~VILDVV 576 (1111)
T TIGR02102 558 KNLINEIHKRGMGVILDVV 576 (1111)
T ss_pred HHHHHHHHHCCCEEEEecc
Confidence 9999999999999999864
No 204
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=20.41 E-value=2.5e+02 Score=27.29 Aligned_cols=88 Identities=10% Similarity=0.076 Sum_probs=68.4
Q ss_pred HHHHHcCCCeeeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEec---cCCC--cHHHHHH--hCCCCCh
Q 036937 91 DLMKNLNFDAYRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLY---HYDM--PLALQEK--YGGLLDC 163 (497)
Q Consensus 91 ~l~~~lG~~~~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~---H~~~--P~~l~~~--~ggw~~~ 163 (497)
=++|.+-=|-+++.++-+.++-.. |.--...|++|++++...++++.--++|-. ||++ |.-+..- .=|...+
T Consensus 121 VLAKlAa~n~VAIe~~L~plL~~~-G~~Rar~L~~~r~~l~L~rKYd~P~VISS~A~s~~~lRsPRdl~aL~~~iGme~~ 199 (216)
T PRK03892 121 VLARMAAKRGVAIGFSLSPLLRAN-PYERANILRFMMKAWQLVNKYKVPRFITSSAESKWEVRGPRDLMSLGINIGMEIP 199 (216)
T ss_pred HHHHHHHHcCeEEEEecHHHHhhC-chhHHHHHHHHHHHHHHHHHcCCCEEEecCcchhccCCCHHHHHHHHHHhCCCHH
Confidence 445555558889999999999887 778888999999999999999998888764 6666 5554431 1367778
Q ss_pred hhHHHHHHHHHHHHHH
Q 036937 164 QVVKDYADYADFCFKT 179 (497)
Q Consensus 164 ~~~~~f~~ya~~~~~~ 179 (497)
+..+.+..|.+.+.++
T Consensus 200 ea~~~Ls~~p~~i~~~ 215 (216)
T PRK03892 200 QAKASLSFYPRIILKR 215 (216)
T ss_pred HHHHHHHHhHHHHhhc
Confidence 8888888888887765
No 205
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=20.36 E-value=3e+02 Score=28.16 Aligned_cols=64 Identities=16% Similarity=0.367 Sum_probs=47.2
Q ss_pred chHHHHHHHHHcCCCeeeecc----cccc---ccccCC------CCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcH
Q 036937 85 RYKEDIDLMKNLNFDAYRFSI----SWSR---IFPEGT------GTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPL 151 (497)
Q Consensus 85 ry~eDi~l~~~lG~~~~R~si----~W~r---i~P~~~------g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 151 (497)
..++=|+.|+..++|.+-+-+ +|.- -.|+-+ |.+.. +-++++++.++++||++|.-+ |+|.
T Consensus 19 ~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI---d~PG 92 (311)
T cd06570 19 VIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI---DVPG 92 (311)
T ss_pred HHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee---cCcc
Confidence 456678999999999888766 5643 233311 34555 457799999999999999988 8887
Q ss_pred HHH
Q 036937 152 ALQ 154 (497)
Q Consensus 152 ~l~ 154 (497)
...
T Consensus 93 H~~ 95 (311)
T cd06570 93 HAS 95 (311)
T ss_pred chH
Confidence 553
No 206
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=20.30 E-value=4.2e+02 Score=24.82 Aligned_cols=50 Identities=28% Similarity=0.396 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCe--eeeccccccccccCCCCCChhhhHHHHHHHHHHHHcCCeeEEEeccCCCcH
Q 036937 88 EDIDLMKNLNFDA--YRFSISWSRIFPEGTGTVNQKGVDYYNRLIDYMLEQGITPYANLYHYDMPL 151 (497)
Q Consensus 88 eDi~l~~~lG~~~--~R~si~W~ri~P~~~g~~n~~~l~~y~~~i~~l~~~gi~p~vtL~H~~~P~ 151 (497)
.|.+.+|+.|++. +|.+ +|++..|+ .+..-++.++++|| .+..|||..|.
T Consensus 16 ~dw~~vk~~Gi~faiikat--------eG~~~~D~----~~~~n~~~A~~aGl--~vG~Yhf~~~~ 67 (192)
T cd06522 16 ADYNKLKNYGVKAVIVKLT--------EGTTYRNP----YAASQIANAKAAGL--KVSAYHYAHYT 67 (192)
T ss_pred HHHHHHHHcCCCEEEEEEc--------CCCCccCh----HHHHHHHHHHHCCC--eeEEEEEEecC
Confidence 4778899999884 3432 34455676 47888999999999 47999988764
No 207
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=20.27 E-value=7.4e+02 Score=25.01 Aligned_cols=86 Identities=16% Similarity=0.151 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCC-CCCChhhhHHHHHHHHH----HHHcCCeeEEEeccCCCcHHHHHHhCCCC
Q 036937 87 KEDIDLMKNLNFDAYRFSISWSRIFPEGT-GTVNQKGVDYYNRLIDY----MLEQGITPYANLYHYDMPLALQEKYGGLL 161 (497)
Q Consensus 87 ~eDi~l~~~lG~~~~R~si~W~ri~P~~~-g~~n~~~l~~y~~~i~~----l~~~gi~p~vtL~H~~~P~~l~~~~ggw~ 161 (497)
.+=++-.++.|+..||+| |.++|-.+ -...+.-.+.....+++ .+++||+ +++| |..+.. -+=.
T Consensus 48 ~~~L~~n~~~~I~~yRis---S~liP~ashp~~~~~~~~~~~~~l~~iG~~~~~~~iR--ls~H----P~qf~v--LnSp 116 (275)
T PF03851_consen 48 LRILEYNIAHGIRFYRIS---SDLIPLASHPEVGWDWEEEFAEELAEIGDLAKENGIR--LSMH----PDQFTV--LNSP 116 (275)
T ss_dssp HHHHHHHHHTT--EEE-----TTSSTTTTSTT--S-HHHHHHHHHHHHHHHHHHTT-E--EEE-------TT----TT-S
T ss_pred HHHHHHHHHcCCCEEecC---cccCCCCCCcccccchHHHHHHHHHHHHHHHHHcCCe--EEec----CCccee--CCCC
Confidence 344566778899999999 78999763 11222222333444443 5568997 4553 544332 1223
Q ss_pred ChhhHHH---HHHHHHHHHHHhCCc
Q 036937 162 DCQVVKD---YADYADFCFKTFGDR 183 (497)
Q Consensus 162 ~~~~~~~---f~~ya~~~~~~~~d~ 183 (497)
++++++. =.+|-..+++.+|-.
T Consensus 117 ~~~Vv~~si~~L~yH~~~Ld~mg~~ 141 (275)
T PF03851_consen 117 REEVVENSIRDLEYHARLLDLMGLD 141 (275)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTT-T
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4566653 356777788888743
Done!