BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036939
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UJ5|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-Phosphate Isomerase Complexed With
Ribose-5-Phosphate
Length = 227
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 108/220 (49%), Gaps = 42/220 (19%)
Query: 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQ 89
+ KK AA+ ++ +V+ GMVVGLGT STA +AV ++ L +G+LK +VG+PTS+ T +
Sbjct: 6 ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 65
Query: 90 AVSLGIPLSDLDSHPVIDLAIDGADEVDPGLA---------------------------- 121
A GIPL DL V DLAIDGADE+ PGLA
Sbjct: 66 AKREGIPLVDLPPEGV-DLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADH 124
Query: 122 -----------VPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKK 170
VPVE+VP ++ T DL + Y G+ I D F
Sbjct: 125 TKKVPVLGRGPVPVEIVPFGYRATLKAIADLGGEPELRMDGDEFYFTDGGHLIADCRFGP 184
Query: 171 DIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGV 210
IGD + +R L I GVVE G+F+ MAT ++ G GV
Sbjct: 185 -IGD-PLGLHRALLEIPGVVETGLFVGMATRALVAGPFGV 222
>pdb|2F8M|A Chain A, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
pdb|2F8M|B Chain B, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum
Length = 244
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 108/221 (48%), Gaps = 47/221 (21%)
Query: 30 DELKKIAANKSV-EFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHD 88
D LKKI A K+V E+V+S M +GLGT ST + +++I LL GKLK++V IPTS T
Sbjct: 10 DSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDTEL 69
Query: 89 QAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL---------------------------- 120
+A LGIPL+ L+ H ID+ IDG DE+D L
Sbjct: 70 KARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIIIGD 129
Query: 121 -------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLR----TCYEKHNGNCI 163
AVP+E++ ++ ++ GC K+R + N N I
Sbjct: 130 ESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKRNGEIFITDNKNYI 189
Query: 164 IDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVII 204
+D +F + I D+ RI ++ GVV+HG+F++M +I
Sbjct: 190 VDFFFTEPIQDLLETCTRI-KMTTGVVDHGIFVNMTNVALI 229
>pdb|1UJ4|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-phosphate Isomerase
pdb|1UJ6|A Chain A, Crystal Structure Of Thermus Thermophilus
Ribose-5-Phosphate Isomerase Complexed With
Arabinose-5-Phosphate
Length = 227
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 106/220 (48%), Gaps = 42/220 (19%)
Query: 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQ 89
+ KK AA+ ++ +V+ G VVGLGT STA +AV ++ L +G+LK +VG+PTS+ T +
Sbjct: 6 ESYKKEAAHAAIAYVQDGXVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 65
Query: 90 AVSLGIPLSDLDSHPVIDLAIDGADEVDPGLA---------------------------- 121
A GIPL DL V DLAIDGADE+ PGLA
Sbjct: 66 AKREGIPLVDLPPEGV-DLAIDGADEIAPGLALIKGXGGALLREKIVERVAKEFIVIADH 124
Query: 122 -----------VPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKK 170
VPVE+VP ++ T DL + Y G+ I D F
Sbjct: 125 TKKVPVLGRGPVPVEIVPFGYRATLKAIADLGGEPELRXDGDEFYFTDGGHLIADCRFGP 184
Query: 171 DIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGV 210
IGD + +R L I GVVE G+F+ AT ++ G GV
Sbjct: 185 -IGD-PLGLHRALLEIPGVVETGLFVGXATRALVAGPFGV 222
>pdb|1LK5|A Chain A, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|B Chain B, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|C Chain C, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK5|D Chain D, Structure Of The D-Ribose-5-Phosphate Isomerase From
Pyrococcus Horikoshii
pdb|1LK7|A Chain A, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|B Chain B, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|C Chain C, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
pdb|1LK7|D Chain D, Structure Of D-Ribose-5-Phosphate Isomerase From In
Complex With Phospho-Erythronic Acid
Length = 229
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 112/229 (48%), Gaps = 56/229 (24%)
Query: 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQ 89
+E+KKIAA ++++F++ MV+GLGT ST + + +GE L +G++ +IVG+PTS
Sbjct: 4 EEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLL 63
Query: 90 AVSLGIPLSDLDSHPVIDLAIDGADEVDPGL----------------------------- 120
A+ IP++ LD ID+A+DGADEVDP L
Sbjct: 64 AIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDE 123
Query: 121 -----------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEK------HNGNCI 163
VP+EV+P WK +F A+LR K NGN I
Sbjct: 124 RKLVDYLCQKMPVPIEVIPQAWKAIIEEL-SIF---NAKAELRMGVNKDGPVITDNGNFI 179
Query: 164 IDLYFKK--DIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGV 210
ID F + D DME+ N I GV+E+G+F D+A VI+ + GV
Sbjct: 180 IDAKFPRIDDPLDMEIELNT----IPGVIENGIFADIADIVIVGTREGV 224
>pdb|3L7O|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Streptococcus Mutans Ua159
pdb|3L7O|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Streptococcus Mutans Ua159
Length = 225
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 112/232 (48%), Gaps = 62/232 (26%)
Query: 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQ 89
+ELKKIA ++ ++V+ GM+VGLGT STA + V+++G + + L+ ++G+ TS T Q
Sbjct: 2 EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGLQ-VIGVTTSSRTTAQ 60
Query: 90 AVSLGIPLSDLDSHPVIDLAIDGADEVDP------------------------------- 118
A +LGIPL +D +D+ +DGADEVDP
Sbjct: 61 AQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDE 120
Query: 119 --------GLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNG--------NC 162
+PVEVV ++ A R F+ G + + +++G N
Sbjct: 121 SKMVDTLGAFRLPVEVV----QYGAERLFREFEKKGY----KPSFREYDGVRFVTDMKNF 172
Query: 163 IIDLYFKKDIGDM--EVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTI 212
IIDL D+G + +A +L GVVEHG+F M VI+ GK GV I
Sbjct: 173 IIDL----DLGSIPDPIAFGNMLDHQVGVVEHGLFNGMVNRVIVAGKDGVRI 220
>pdb|4GMK|A Chain A, Crystal Structure Of Ribose 5-Phosphate Isomerase From The
Probiotic Bacterium Lactobacillus Salivarius Ucc118
pdb|4GMK|B Chain B, Crystal Structure Of Ribose 5-Phosphate Isomerase From The
Probiotic Bacterium Lactobacillus Salivarius Ucc118
Length = 228
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/223 (34%), Positives = 109/223 (48%), Gaps = 51/223 (22%)
Query: 26 GLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKT 85
G QDELK++ K+VE++K GM+VGLGT ST + VD +G+ +++ L +IVG+ TS
Sbjct: 1 GPNQDELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGL-DIVGVTTSIR 59
Query: 86 THDQAVSLGIPLSDLDSHPVIDLAIDGADEV----------------------------- 116
T +QA SLGI + D+D IDL IDGADE+
Sbjct: 60 TAEQAKSLGIVIKDIDEVDHIDLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMW 119
Query: 117 ---------DPG-LAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLR-----TCYEKHNGN 161
D G +PVEV+P R F++ G + R + + N
Sbjct: 120 IVDESKMVDDLGQFPLPVEVIPYGSGTVFKR----FEEKGLNPEFRKNEDGSLLHTDSDN 175
Query: 162 CIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVII 204
IIDL+ K E+ I ++ GVVEHG+FLD+ TVI+
Sbjct: 176 YIIDLHLGKIENPKELGDYLINQV--GVVEHGLFLDIVNTVIV 216
>pdb|3IXQ|A Chain A, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|B Chain B, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|C Chain C, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
pdb|3IXQ|D Chain D, Structure Of Ribose 5-Phosphate Isomerase A From
Methanocaldococcus Jannaschii
Length = 226
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 95/217 (43%), Gaps = 58/217 (26%)
Query: 27 LTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT 86
++ ++LK A ++V+ VK GMV+GLGT STA + ++G + + +L + GIPTS
Sbjct: 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEA 59
Query: 87 HDQAVSLGIPLSDLDSHPVIDLAIDGADEVD----------------------------- 117
A+ IPL LD + V D+A DGADEV+
Sbjct: 60 KMLAMQYEIPLVTLDEYDV-DIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVV 118
Query: 118 ------------PGLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKH------N 159
+PVEV+P ++ ++ G A +R K N
Sbjct: 119 LVDESKLVKKLGEKFPIPVEVIPSAYRVVIRALSEM----GGEAVIRLGDRKRGPVITDN 174
Query: 160 GNCIIDLYFKKDIG-DMEVASNRILRLIAGVVEHGMF 195
GN IID++ D ++E N I GVVE+G+F
Sbjct: 175 GNMIIDVFMNIDDAIELEKEINN----IPGVVENGIF 207
>pdb|3ENQ|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase A From Vibrio Vulnificus Yj016
pdb|3ENQ|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase A From Vibrio Vulnificus Yj016
pdb|3ENV|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENV|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENW|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
pdb|3ENW|B Chain B, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate
Isomerase From Vibrio Vulnificus Yj016
Length = 235
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 57/223 (25%)
Query: 27 LTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT 86
+TQDE+KK A ++++V+ G +VG+GT ST H +D +G + + +K V +S +
Sbjct: 18 MTQDEMKKAAGWAALKYVEKGSIVGVGTGSTVNHFIDALGTMSEE--IKGAV--SSSVAS 73
Query: 87 HDQAVSLGIPLSDLDSHPVIDLAIDGADEVDP--------GLA----------------- 121
++ +LGI + D + +D+ +DGADE++ G A
Sbjct: 74 TEKLEALGIKIFDCNEVASLDIYVDGADEINADREMIKGGGAALTREKIVAAIADKFICI 133
Query: 122 --------------VPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEK----HNGNCI 163
+PVEV+P+ + A + L D CY + NGN I
Sbjct: 134 VDGTKAVDVLGTFPLPVEVIPMARSYVARQLVKLGGD--------PCYREGVITDNGNVI 185
Query: 164 IDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVG 206
+D+Y K ++ + I GVV G+F V+I G
Sbjct: 186 LDVYGMKITNPKQLEDQ--INAIPGVVTVGLFAHRGADVVITG 226
>pdb|3HHE|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
pdb|3HHE|B Chain B, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Bartonella Henselae
Length = 255
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 100/228 (43%), Gaps = 51/228 (22%)
Query: 22 PTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIP 81
P S+ + Q LKK+AA K++EFV+ M +G+G+ ST + +GE + G + +
Sbjct: 19 PGSMNVQQ--LKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVANGL--RVTCVA 74
Query: 82 TSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDP----------------------- 118
TS+ + G+P+S L+ P +DL IDGADE+ P
Sbjct: 75 TSQYSEQLCHKFGVPISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASR 134
Query: 119 ----------------GLAVPVEVVPVCWKFTANRFPDLFKDCGCVAK--LRTC----YE 156
A+P+EV P T + G + LR ++
Sbjct: 135 AMFVIADETKMVKTLGAFALPIEVNPFGIHATRIAIEKAADNLGLSGEITLRMNGDDPFK 194
Query: 157 KHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVII 204
G+ I D ++ + I ++ S +L I GVVEHG+FL +A+ I+
Sbjct: 195 TDGGHFIFDAFWGR-ILQPKLLSEALLA-IPGVVEHGLFLGLASRAIV 240
>pdb|1KS2|A Chain A, Crystal Structure Analysis Of The Rpia, Structural
Genomics, Protein Ec1268.
pdb|1KS2|B Chain B, Crystal Structure Analysis Of The Rpia, Structural
Genomics, Protein Ec1268
Length = 219
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 49/219 (22%)
Query: 27 LTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT 86
+TQDELKK ++++V+ G +VG+GT STA H +D +G +G+++ V +S +
Sbjct: 1 MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTX--KGQIEGAV--SSSDAS 56
Query: 87 HDQAVSLGIPLSDLDSHPVIDLAIDGADEVD--------PGLA----------------- 121
++ SLGI + DL+ + + +DGADE++ G A
Sbjct: 57 TEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHXQXIKGGGAALTREKIIASVAEKFICI 116
Query: 122 --------------VPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLY 167
+PVEV+P A + L G + R NGN I+D++
Sbjct: 117 ADASKQVDILGKFPLPVEVIPXARSAVARQLVKL----GGRPEYRQGVVTDNGNVILDVH 172
Query: 168 FKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVG 206
+I D +A + I GVV G+F + V ++G
Sbjct: 173 -GXEILD-PIAXENAINAIPGVVTVGLFANRGADVALIG 209
>pdb|1LKZ|A Chain A, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
From Escherichia Coli.
pdb|1LKZ|B Chain B, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
From Escherichia Coli.
pdb|1O8B|A Chain A, Structure Of Escherichia Coli Ribose-5-Phosphate
Isomerase, Rpia, Complexed With Arabinose-5-Phosphate.
pdb|1O8B|B Chain B, Structure Of Escherichia Coli Ribose-5-Phosphate
Isomerase, Rpia, Complexed With Arabinose-5-Phosphate
Length = 219
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 49/218 (22%)
Query: 28 TQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH 87
TQDELKK ++++V+ G +VG+GT STA H +D +G +G+++ V +S +
Sbjct: 2 TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTX--KGQIEGAV--SSSDAST 57
Query: 88 DQAVSLGIPLSDLDSHPVIDLAIDGADEVD--------PGLA------------------ 121
++ SLGI + DL+ + + +DGADE++ G A
Sbjct: 58 EKLKSLGIHVFDLNEVDSLGIYVDGADEINGHXQXIKGGGAALTREKIIASVAEKFICIA 117
Query: 122 -------------VPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYF 168
+PVEV+P A + L G + R NGN I+D++
Sbjct: 118 DASKQVDILGKFPLPVEVIPXARSAVARQLVKL----GGRPEYRQGVVTDNGNVILDVH- 172
Query: 169 KKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVG 206
+I D +A + I GVV G+F + V ++G
Sbjct: 173 GXEILD-PIAXENAINAIPGVVTVGLFANRGADVALIG 209
>pdb|3KWM|A Chain A, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|B Chain B, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|C Chain C, Crystal Structure Of Ribose-5-Isomerase A
pdb|3KWM|D Chain D, Crystal Structure Of Ribose-5-Isomerase A
pdb|4IO1|A Chain A, Crystal Structure Of Ribose-5-isomerase A From Francisella
Tularensis
pdb|4IO1|B Chain B, Crystal Structure Of Ribose-5-isomerase A From Francisella
Tularensis
Length = 224
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 50/219 (22%)
Query: 29 QDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHD 88
QDELKK+AA ++ + + + + +G+GT ST ++++ + ++ K+K +V +S+ +
Sbjct: 9 QDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEEL--VNYRDKIKTVVS--SSEDSTR 64
Query: 89 QAVSLGIPLSDLDSHPVIDLAIDGADEVDP------------------------------ 118
+ +LG + DL+ IDL IDGADE +
Sbjct: 65 KLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIID 124
Query: 119 ---------GLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFK 169
+P+EV+P+ + A + L G R NGN I+D+Y
Sbjct: 125 ESKKVNTLGNFPLPIEVIPMARSYIARQIVKL----GGQPVYREQTITDNGNVILDVYNL 180
Query: 170 KDIGDMEVASNRILRLIAGVVEHGMF-LDMATTVIIVGK 207
K +++ + L I GVV +G+F L A TVI+ K
Sbjct: 181 KIDNPLKLETE--LNQITGVVTNGIFALKPADTVIMATK 217
>pdb|1M0S|A Chain A, Northeast Structural Genomics Consortium (Nesg Id Ir21)
pdb|1M0S|B Chain B, Northeast Structural Genomics Consortium (Nesg Id Ir21)
Length = 219
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 50/220 (22%)
Query: 27 LTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT 86
+ Q E+KK+AA ++++VK+ +VG+G+ ST ++ +G + + K++ V SK +
Sbjct: 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI--KDKIQGAVA--ASKES 56
Query: 87 HDQAVSLGIPLSDLDSHPVIDLAIDGADEVDP--------GLA----------------- 121
+ GI + + + +D+ +DGADE++P G A
Sbjct: 57 EELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICI 116
Query: 122 ---------------VPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDL 166
+PVEV+P+ + L G + R NGN I+D+
Sbjct: 117 VDSSKQVDVLGSTFPLPVEVIPMARSQVGRKLAAL----GGSPEYREGVVTDNGNVILDV 172
Query: 167 YFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVG 206
+ + +E+ + L +AGVV +G+F V+IVG
Sbjct: 173 HNFSILNPVEI--EKELNNVAGVVTNGIFALRGADVVIVG 210
>pdb|1XTZ|A Chain A, Crystal Structure Of The S. Cerevisiae
D-Ribose-5-Phosphate Isomerase: Comparison With The
Archeal And Bacterial Enzymes
Length = 264
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 99/236 (41%), Gaps = 65/236 (27%)
Query: 24 SVGLTQDELKKIAANKSV-EFVK--SGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVG- 79
S+G ++ K+ AA ++V E +K ++G+G+ ST + ++IG+ LH K +
Sbjct: 13 SLGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASK 72
Query: 80 ---IPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL---------------- 120
IPT + + + + L ++ +P ID+A DGADEVD L
Sbjct: 73 FICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLV 132
Query: 121 ---------------------------AVPVEVVPVCWKFTANRFPDLFKDC-------- 145
VP+E+VP + N DL +
Sbjct: 133 STSAKTFIVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVRVKN---DLLEQLHAEKVDIR 189
Query: 146 -GCVAKLRTCYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMAT 200
G AK +N N IID F +I D +R ++L+ GVVE G+F+D A+
Sbjct: 190 QGGSAKAGPVVTDNN-NFIIDADF-GEISDPR-KLHREIKLLVGVVETGLFIDNAS 242
>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis
pdb|3UW1|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
Burkholderia Thailandensis With Ribose-5-Phosphate
Length = 239
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 91/230 (39%), Gaps = 62/230 (26%)
Query: 27 LTQDELKKIAANKSVEFVK----SGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPT 82
+TQDELK++ + +V G V+G+GT STA +D + + K + + +
Sbjct: 9 MTQDELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAV----KDRYRGAVSS 64
Query: 83 SKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLA--------------------- 121
S T ++ S GI + DL+ + + +DGADE+D A
Sbjct: 65 SVATTERLKSHGIRVFDLNEIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAET 124
Query: 122 ------------------VPVEVVPVCWKFTANRFPDLFKDCGCVAKLR-----TCYEKH 158
+PVEVVP+ R L G V LR T Y
Sbjct: 125 FVCIADASKRVAMLGQFPLPVEVVPMARTAIGRRLAAL----GGVPVLRVKQDGTPYVTD 180
Query: 159 NGNCIIDLYFKK--DIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVG 206
NGN I+D+ + D +E A N GVV G+F + ++G
Sbjct: 181 NGNEILDVKGLRIDDPRALEAAING----WPGVVTVGLFAQRGADLCLLG 226
>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
Length = 60
Score = 28.5 bits (62), Expect = 2.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 125 EVVPVCWKFTANRFPDLFKDCGCVAKL----RTC 154
E VPVCW + F+ CGC +L R+C
Sbjct: 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSC 37
>pdb|1E5D|A Chain A, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
pdb|1E5D|B Chain B, Rubredoxin Oxygen:oxidoreductase (Roo) From Anaerobe
Desulfovibrio Gigas
Length = 402
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 135 ANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKKDIGDMEVAS----NRILRLIAGVV 190
A + F+D GC KL C H+ + ++ D G + V S N IL +AG +
Sbjct: 270 ARVLAESFRDEGCTVKLMWCKACHHSQIMSEI---SDAGAVIVGSPTHNNGILPYVAGTL 326
Query: 191 EH 192
++
Sbjct: 327 QY 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,272,978
Number of Sequences: 62578
Number of extensions: 263420
Number of successful extensions: 674
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 33
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)