Query 036939
Match_columns 215
No_of_seqs 163 out of 1067
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:56:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02384 ribose-5-phosphate is 100.0 1.3E-61 2.9E-66 427.1 23.9 214 1-215 1-264 (264)
2 PRK13978 ribose-5-phosphate is 100.0 2.6E-61 5.7E-66 418.2 22.0 183 26-215 1-228 (228)
3 COG0120 RpiA Ribose 5-phosphat 100.0 1E-59 2.2E-64 406.5 20.1 181 27-215 1-227 (227)
4 PRK00702 ribose-5-phosphate is 100.0 1.8E-54 3.9E-59 374.1 20.6 178 28-213 2-220 (220)
5 TIGR00021 rpiA ribose 5-phosph 100.0 2.9E-52 6.2E-57 360.0 19.6 173 32-210 1-217 (218)
6 KOG3075 Ribose 5-phosphate iso 100.0 9.3E-51 2E-55 354.0 18.2 189 24-215 19-258 (261)
7 cd01398 RPI_A RPI_A: Ribose 5- 100.0 1.1E-48 2.3E-53 336.0 19.6 168 32-206 1-213 (213)
8 PF06026 Rib_5-P_isom_A: Ribos 100.0 2.4E-44 5.2E-49 301.1 13.3 129 77-211 1-173 (173)
9 PF00455 DeoRC: DeoR C termina 99.3 2.6E-12 5.6E-17 105.9 8.0 84 30-120 3-107 (161)
10 PRK10681 DNA-binding transcrip 99.2 3E-11 6.6E-16 106.0 7.2 85 29-120 75-180 (252)
11 PRK09802 DNA-binding transcrip 99.2 7.1E-11 1.5E-15 104.8 8.2 86 29-121 89-195 (269)
12 PRK10906 DNA-binding transcrip 99.2 1E-10 2.3E-15 102.8 8.2 85 29-120 74-179 (252)
13 PRK10411 DNA-binding transcrip 99.2 8.7E-11 1.9E-15 102.6 7.7 83 29-119 76-179 (240)
14 PRK13509 transcriptional repre 99.1 1.4E-10 3E-15 101.8 8.3 81 30-118 77-177 (251)
15 PRK10434 srlR DNA-bindng trans 99.1 1.6E-10 3.5E-15 101.6 8.5 84 30-120 75-180 (256)
16 COG1349 GlpR Transcriptional r 99.0 1.5E-09 3.3E-14 95.6 8.7 83 29-118 74-177 (253)
17 COG1184 GCD2 Translation initi 97.0 0.0042 9E-08 56.7 9.0 105 29-138 102-238 (301)
18 cd00458 SugarP_isomerase Sugar 96.8 0.0043 9.3E-08 51.3 6.5 70 45-114 19-123 (169)
19 PF04198 Sugar-bind: Putative 96.7 0.0026 5.6E-08 56.1 4.8 153 22-191 25-220 (255)
20 COG2390 DeoR Transcriptional r 96.1 0.0098 2.1E-07 54.7 5.2 139 20-169 84-264 (321)
21 TIGR00511 ribulose_e2b2 ribose 95.3 0.14 3E-06 46.5 9.6 101 30-133 99-229 (301)
22 PRK08335 translation initiatio 95.1 0.17 3.8E-06 45.6 9.4 101 30-133 93-223 (275)
23 TIGR00524 eIF-2B_rel eIF-2B al 95.1 0.18 3.9E-06 45.9 9.5 100 32-134 104-244 (303)
24 PRK15418 transcriptional regul 95.0 0.026 5.7E-07 51.5 3.8 149 30-190 95-279 (318)
25 PRK08535 translation initiatio 94.7 0.21 4.6E-06 45.5 8.9 100 31-133 105-234 (310)
26 PF01008 IF-2B: Initiation fac 94.6 0.13 2.8E-06 45.4 7.2 101 29-133 90-222 (282)
27 TIGR00512 salvage_mtnA S-methy 94.4 0.28 6.1E-06 45.4 9.1 83 31-118 127-238 (331)
28 PRK06036 translation initiatio 92.4 0.75 1.6E-05 42.7 8.5 82 32-118 133-239 (339)
29 PRK06372 translation initiatio 92.2 0.84 1.8E-05 40.8 8.3 95 32-132 73-196 (253)
30 PRK05720 mtnA methylthioribose 91.9 1.1 2.3E-05 41.7 8.9 82 32-118 132-238 (344)
31 COG2057 AtoA Acyl CoA:acetate/ 91.5 0.95 2.1E-05 39.9 7.7 36 30-66 5-40 (225)
32 PRK05772 translation initiatio 91.2 1 2.2E-05 42.2 8.1 83 31-118 151-259 (363)
33 PRK06371 translation initiatio 91.2 1.3 2.7E-05 41.1 8.6 80 34-118 124-228 (329)
34 PF03927 NapD: NapD protein; 90.1 0.82 1.8E-05 33.6 5.2 68 122-198 8-75 (79)
35 PRK00443 nagB glucosamine-6-ph 89.9 0.82 1.8E-05 39.7 5.9 55 28-82 8-71 (261)
36 PRK08334 translation initiatio 88.8 2.6 5.6E-05 39.5 8.6 82 32-118 146-251 (356)
37 PF01037 AsnC_trans_reg: AsnC 88.4 1.1 2.3E-05 31.0 4.5 60 124-192 3-66 (74)
38 PRK09920 acetyl-CoA:acetoacety 88.2 0.68 1.5E-05 40.4 4.2 47 33-83 4-53 (219)
39 COG1102 Cmk Cytidylate kinase 87.1 0.26 5.6E-06 41.8 0.9 52 53-112 10-65 (179)
40 TIGR02429 pcaI_scoA_fam 3-oxoa 86.1 1.1 2.3E-05 39.3 4.1 43 37-83 9-54 (222)
41 COG2230 Cfa Cyclopropane fatty 85.8 2.3 4.9E-05 38.7 6.3 61 28-96 52-121 (283)
42 cd01399 GlcN6P_deaminase GlcN6 85.8 1.4 3E-05 37.3 4.7 35 34-68 5-41 (232)
43 TIGR02428 pcaJ_scoB_fam 3-oxoa 85.4 1.7 3.7E-05 37.4 5.1 89 33-128 3-117 (207)
44 KOG1466 Translation initiation 84.6 5.8 0.00013 36.2 8.1 83 32-118 116-211 (313)
45 PF02550 AcetylCoA_hydro: Acet 83.8 1.9 4.1E-05 36.4 4.6 38 33-70 8-48 (198)
46 PRK10553 assembly protein for 83.0 4.6 9.9E-05 30.5 5.9 69 121-198 9-78 (87)
47 COG1788 AtoD Acyl CoA:acetate/ 79.4 3.1 6.8E-05 36.6 4.4 47 33-83 4-53 (220)
48 PF04223 CitF: Citrate lyase, 77.3 22 0.00047 34.4 9.7 171 27-214 203-464 (466)
49 TIGR03458 YgfH_subfam succinat 74.3 3.9 8.5E-05 39.8 4.0 35 36-70 4-41 (485)
50 PLN02891 IMP cyclohydrolase 70.4 16 0.00035 36.2 7.2 66 32-98 434-514 (547)
51 TIGR01584 citF citrate lyase, 70.3 9.4 0.0002 37.3 5.6 43 28-70 227-275 (492)
52 COG0427 ACH1 Acetyl-CoA hydrol 69.6 6.4 0.00014 38.5 4.2 44 29-72 9-56 (501)
53 PF01144 CoA_trans: Coenzyme A 69.3 9.2 0.0002 32.3 4.8 30 38-68 5-39 (217)
54 PF01488 Shikimate_DH: Shikima 67.9 12 0.00027 29.4 5.0 63 37-103 3-69 (135)
55 PF02353 CMAS: Mycolic acid cy 65.8 27 0.00058 31.2 7.2 104 29-148 43-161 (273)
56 PF02558 ApbA: Ketopantoate re 65.7 30 0.00065 26.9 6.8 131 50-203 2-137 (151)
57 KOG1465 Translation initiation 64.8 22 0.00047 33.1 6.5 95 33-129 149-272 (353)
58 PRK05752 uroporphyrinogen-III 64.0 16 0.00034 31.7 5.3 49 48-98 184-232 (255)
59 PRK07239 bifunctional uroporph 61.7 19 0.00042 33.1 5.7 57 42-98 195-258 (381)
60 PRK09189 uroporphyrinogen-III 61.5 18 0.00039 30.9 5.1 48 48-95 172-219 (240)
61 TIGR00355 purH phosphoribosyla 60.2 32 0.0007 33.9 7.1 65 33-98 398-478 (511)
62 TIGR01917 gly_red_sel_B glycin 58.5 31 0.00067 33.3 6.5 78 26-103 286-373 (431)
63 cd00423 Pterin_binding Pterin 57.3 40 0.00086 29.6 6.7 61 34-98 24-100 (258)
64 TIGR01501 MthylAspMutase methy 56.7 57 0.0012 26.4 6.9 61 35-98 43-114 (134)
65 PRK07106 5-aminoimidazole-4-ca 56.4 17 0.00037 34.6 4.4 36 31-66 213-256 (390)
66 PRK08811 uroporphyrinogen-III 55.5 17 0.00037 32.1 4.1 51 47-98 191-241 (266)
67 PRK05928 hemD uroporphyrinogen 55.2 19 0.00042 30.0 4.2 53 46-98 177-229 (249)
68 smart00798 AICARFT_IMPCHas AIC 54.6 19 0.00042 33.2 4.4 34 33-66 266-307 (311)
69 KOG0023 Alcohol dehydrogenase, 54.6 66 0.0014 30.3 7.8 63 44-114 179-255 (360)
70 COG0802 Predicted ATPase or ki 54.4 33 0.00072 28.4 5.3 63 30-98 8-74 (149)
71 TIGR01012 Sa_S2_E_A ribosomal 54.4 1.1E+02 0.0025 26.3 8.8 71 31-101 46-138 (196)
72 PF02254 TrkA_N: TrkA-N domain 54.2 52 0.0011 24.3 6.0 46 49-99 1-46 (116)
73 PF02602 HEM4: Uroporphyrinoge 54.2 18 0.0004 30.1 3.9 51 46-98 168-218 (231)
74 COG0371 GldA Glycerol dehydrog 53.7 26 0.00057 32.9 5.2 52 29-87 70-121 (360)
75 cd02072 Glm_B12_BD B12 binding 53.7 51 0.0011 26.5 6.2 61 35-98 41-112 (128)
76 COG0421 SpeE Spermidine syntha 53.6 23 0.0005 32.0 4.7 56 48-111 81-137 (282)
77 PRK04148 hypothetical protein; 50.8 30 0.00066 28.0 4.5 72 49-130 22-94 (134)
78 cd08242 MDR_like Medium chain 50.8 1.2E+02 0.0026 26.2 8.6 65 43-112 152-221 (319)
79 PRK11179 DNA-binding transcrip 50.8 38 0.00083 27.2 5.1 57 128-193 80-138 (153)
80 PRK04020 rps2P 30S ribosomal p 49.6 1.5E+02 0.0032 25.7 8.8 70 32-101 53-144 (204)
81 cd06578 HemD Uroporphyrinogen- 49.1 39 0.00084 27.8 5.1 49 49-98 176-224 (239)
82 PRK05234 mgsA methylglyoxal sy 48.9 55 0.0012 26.5 5.8 33 30-63 13-47 (142)
83 TIGR01918 various_sel_PB selen 48.0 47 0.001 32.1 5.9 93 26-119 286-388 (431)
84 PF05991 NYN_YacP: YacP-like N 46.9 56 0.0012 27.0 5.6 53 49-102 70-122 (166)
85 cd01424 MGS_CPS_II Methylglyox 46.3 79 0.0017 23.7 6.0 28 33-61 12-39 (110)
86 PF13291 ACT_4: ACT domain; PD 44.5 47 0.001 23.2 4.3 68 120-192 5-78 (80)
87 COG4670 Acyl CoA:acetate/3-ket 43.5 40 0.00087 33.2 4.8 49 33-81 4-56 (527)
88 COG0329 DapA Dihydrodipicolina 43.5 50 0.0011 29.8 5.2 69 30-98 56-134 (299)
89 cd00408 DHDPS-like Dihydrodipi 43.2 56 0.0012 28.5 5.4 55 30-84 49-103 (281)
90 cd05565 PTS_IIB_lactose PTS_II 42.9 99 0.0022 23.6 6.1 65 50-128 5-79 (99)
91 PF01808 AICARFT_IMPCHas: AICA 42.8 29 0.00062 32.1 3.6 33 34-66 271-311 (315)
92 COG0373 HemA Glutamyl-tRNA red 42.8 91 0.002 29.9 7.0 68 44-115 176-248 (414)
93 TIGR00853 pts-lac PTS system, 42.7 93 0.002 23.3 5.8 67 49-128 7-82 (95)
94 PRK09762 galactosamine-6-phosp 42.4 65 0.0014 27.9 5.6 47 28-74 8-56 (232)
95 KOG2555 AICAR transformylase/I 42.3 18 0.00038 35.2 2.2 26 33-58 413-446 (588)
96 cd08177 MAR Maleylacetate redu 42.0 1.1E+02 0.0023 27.8 7.2 43 45-93 77-119 (337)
97 cd05285 sorbitol_DH Sorbitol d 40.8 2.2E+02 0.0047 25.1 8.8 51 43-96 159-209 (343)
98 cd00950 DHDPS Dihydrodipicolin 40.3 68 0.0015 28.1 5.5 55 30-84 52-106 (284)
99 PF13245 AAA_19: Part of AAA d 39.9 1.3E+02 0.0028 21.5 6.0 48 45-93 9-62 (76)
100 cd08269 Zn_ADH9 Alcohol dehydr 39.8 2.3E+02 0.0051 24.0 9.1 49 43-96 126-176 (312)
101 PF08241 Methyltransf_11: Meth 39.4 32 0.0007 23.6 2.7 36 50-93 3-38 (95)
102 cd05281 TDH Threonine dehydrog 39.1 2E+02 0.0044 25.2 8.3 52 42-96 159-210 (341)
103 COG0138 PurH AICAR transformyl 38.5 49 0.0011 32.6 4.5 66 32-98 401-482 (515)
104 PRK12358 putative 6-phosphoglu 38.3 83 0.0018 27.2 5.6 43 28-70 8-52 (239)
105 TIGR00640 acid_CoA_mut_C methy 38.1 2E+02 0.0044 22.8 7.5 59 36-96 45-107 (132)
106 COG0363 NagB 6-phosphogluconol 38.0 60 0.0013 28.5 4.7 43 28-70 8-56 (238)
107 cd04888 ACT_PheB-BS C-terminal 37.8 1.2E+02 0.0025 20.5 5.3 60 128-193 11-73 (76)
108 COG1587 HemD Uroporphyrinogen- 37.7 55 0.0012 28.3 4.4 53 45-98 174-226 (248)
109 PF08679 DsrD: Dissimilatory s 37.7 5.6 0.00012 28.8 -1.5 28 33-60 33-61 (67)
110 cd00532 MGS-like MGS-like doma 37.5 1.2E+02 0.0026 22.9 5.9 30 32-62 10-39 (112)
111 KOG2361 Predicted methyltransf 36.9 74 0.0016 28.8 5.1 98 49-153 77-183 (264)
112 KOG1502 Flavonol reductase/cin 36.7 21 0.00045 33.2 1.7 90 47-141 6-115 (327)
113 cd00954 NAL N-Acetylneuraminic 36.6 86 0.0019 27.8 5.6 53 30-84 53-107 (288)
114 TIGR00460 fmt methionyl-tRNA f 36.4 1E+02 0.0022 27.9 6.1 51 49-103 3-65 (313)
115 PRK05396 tdh L-threonine 3-deh 36.2 2.5E+02 0.0055 24.5 8.5 52 42-96 159-210 (341)
116 PRK07027 cobalamin biosynthesi 35.7 92 0.002 24.6 5.1 53 48-100 4-66 (126)
117 TIGR00692 tdh L-threonine 3-de 35.3 2.4E+02 0.0052 24.7 8.2 52 42-96 157-208 (340)
118 PRK04147 N-acetylneuraminate l 35.1 79 0.0017 28.1 5.1 54 30-83 56-109 (293)
119 PF07021 MetW: Methionine bios 34.9 1.1E+02 0.0024 26.4 5.7 52 41-100 8-62 (193)
120 PRK03170 dihydrodipicolinate s 34.9 90 0.002 27.5 5.4 54 30-83 53-106 (292)
121 COG3140 Uncharacterized protei 34.8 19 0.00042 25.2 0.9 33 38-70 14-46 (60)
122 cd01423 MGS_CPS_I_III Methylgl 34.6 88 0.0019 23.7 4.7 28 33-61 12-39 (116)
123 cd00952 CHBPH_aldolase Trans-o 34.3 72 0.0016 28.8 4.8 52 30-83 60-113 (309)
124 COG3062 NapD Uncharacterized p 34.2 1.5E+02 0.0032 22.9 5.6 67 122-198 11-78 (94)
125 PRK11169 leucine-responsive tr 34.2 65 0.0014 26.2 4.1 59 128-195 87-147 (164)
126 TIGR01357 aroB 3-dehydroquinat 33.9 1.5E+02 0.0033 26.8 6.8 54 28-84 63-117 (344)
127 PRK11613 folP dihydropteroate 33.6 1.6E+02 0.0035 26.7 6.8 60 35-98 39-114 (282)
128 PF14709 DND1_DSRM: double str 33.3 53 0.0011 24.0 3.1 24 21-44 56-79 (80)
129 KOG2915 tRNA(1-methyladenosine 33.3 41 0.00089 31.0 2.9 85 43-132 102-197 (314)
130 cd00739 DHPS DHPS subgroup of 33.3 1.7E+02 0.0036 25.9 6.8 61 34-98 24-100 (257)
131 PF00107 ADH_zinc_N: Zinc-bind 33.3 79 0.0017 23.6 4.2 34 55-96 3-36 (130)
132 TIGR02049 gshA_ferroox glutama 33.0 32 0.00069 32.8 2.3 97 105-213 212-314 (403)
133 TIGR00674 dapA dihydrodipicoli 33.0 1.1E+02 0.0023 27.1 5.5 54 30-83 50-103 (285)
134 PF01269 Fibrillarin: Fibrilla 32.8 92 0.002 27.6 5.0 52 33-90 57-114 (229)
135 KOG1467 Translation initiation 32.8 2.7E+02 0.0059 27.7 8.5 101 34-137 347-477 (556)
136 cd08180 PDD 1,3-propanediol de 32.8 1.9E+02 0.0041 26.1 7.3 44 45-90 78-125 (332)
137 cd08256 Zn_ADH2 Alcohol dehydr 32.6 3.5E+02 0.0075 23.8 8.9 51 43-96 171-221 (350)
138 cd08195 DHQS Dehydroquinate sy 32.5 1.7E+02 0.0038 26.5 7.0 55 29-86 68-123 (345)
139 PRK05948 precorrin-2 methyltra 32.3 2.2E+02 0.0047 24.9 7.3 63 35-100 80-148 (238)
140 PF03848 TehB: Tellurite resis 32.0 92 0.002 26.6 4.8 51 38-97 23-79 (192)
141 PRK05928 hemD uroporphyrinogen 31.3 1.6E+02 0.0034 24.5 6.0 59 39-98 45-103 (249)
142 PRK00002 aroB 3-dehydroquinate 31.2 1.6E+02 0.0036 26.9 6.6 38 44-84 91-128 (358)
143 TIGR00284 dihydropteroate synt 31.2 1.5E+02 0.0033 29.1 6.6 62 34-99 165-233 (499)
144 cd08283 FDH_like_1 Glutathione 31.1 3.1E+02 0.0066 24.9 8.4 53 43-99 181-235 (386)
145 COG0378 HypB Ni2+-binding GTPa 31.0 80 0.0017 27.5 4.2 48 52-103 22-73 (202)
146 PRK10646 ADP-binding protein; 30.9 1.2E+02 0.0026 25.1 5.1 75 31-117 12-91 (153)
147 PF14681 UPRTase: Uracil phosp 30.3 44 0.00096 28.4 2.6 48 51-98 130-179 (207)
148 PLN02285 methionyl-tRNA formyl 30.3 1E+02 0.0022 28.3 5.1 48 49-96 9-70 (334)
149 cd01422 MGS Methylglyoxal synt 29.8 1.3E+02 0.0028 23.2 4.9 33 30-63 8-42 (115)
150 PF01182 Glucosamine_iso: Gluc 29.3 1E+02 0.0022 25.9 4.6 25 45-69 20-44 (199)
151 PRK13940 glutamyl-tRNA reducta 29.2 1.9E+02 0.0042 27.4 6.9 54 44-101 179-234 (414)
152 PF14503 YhfZ_C: YhfZ C-termin 29.1 1.1E+02 0.0025 27.0 5.0 61 43-118 110-170 (232)
153 PRK00005 fmt methionyl-tRNA fo 29.1 2E+02 0.0043 25.9 6.7 49 49-102 3-64 (309)
154 cd08175 G1PDH Glycerol-1-phosp 29.0 1.2E+02 0.0025 27.7 5.2 36 45-85 80-115 (348)
155 PF08704 GCD14: tRNA methyltra 28.8 46 0.00099 29.5 2.4 35 33-67 27-64 (247)
156 cd08189 Fe-ADH5 Iron-containin 28.5 1.1E+02 0.0023 28.2 5.0 44 45-90 83-142 (374)
157 cd08231 MDR_TM0436_like Hypoth 28.4 4.2E+02 0.009 23.4 9.1 56 37-96 165-224 (361)
158 cd06578 HemD Uroporphyrinogen- 28.4 1.9E+02 0.0042 23.5 6.1 61 39-100 42-102 (239)
159 TIGR00683 nanA N-acetylneurami 28.2 1.2E+02 0.0027 27.0 5.2 52 30-83 53-106 (290)
160 COG2450 Uncharacterized conser 28.1 51 0.0011 26.6 2.4 50 159-213 63-117 (124)
161 PRK14103 trans-aconitate 2-met 28.1 1.3E+02 0.0028 25.8 5.1 42 50-98 36-77 (255)
162 cd08551 Fe-ADH iron-containing 27.8 1.4E+02 0.0031 27.2 5.6 44 45-90 80-138 (370)
163 PF02367 UPF0079: Uncharacteri 27.4 90 0.002 24.7 3.7 34 34-69 2-39 (123)
164 cd05278 FDH_like Formaldehyde 27.4 3.3E+02 0.0071 23.6 7.7 51 43-96 164-214 (347)
165 PRK00045 hemA glutamyl-tRNA re 27.3 3E+02 0.0064 25.9 7.8 52 45-100 181-233 (423)
166 PF03853 YjeF_N: YjeF-related 27.3 3.4E+02 0.0074 22.1 9.2 101 30-140 6-129 (169)
167 PF02602 HEM4: Uroporphyrinoge 26.9 2E+02 0.0044 23.7 6.0 51 46-98 42-95 (231)
168 cd08199 EEVS 2-epi-5-epi-valio 26.8 2.5E+02 0.0053 26.0 7.0 54 28-84 69-124 (354)
169 PF00580 UvrD-helicase: UvrD/R 26.6 1.5E+02 0.0032 25.3 5.2 40 51-91 21-62 (315)
170 TIGR02081 metW methionine bios 26.5 1.6E+02 0.0035 24.1 5.2 50 41-98 8-60 (194)
171 PF02824 TGS: TGS domain; Int 26.4 70 0.0015 21.8 2.6 28 44-71 5-32 (60)
172 cd07766 DHQ_Fe-ADH Dehydroquin 26.4 1.5E+02 0.0032 26.5 5.4 40 45-87 78-117 (332)
173 COG1064 AdhP Zn-dependent alco 26.3 92 0.002 29.1 4.1 56 38-98 156-214 (339)
174 COG2242 CobL Precorrin-6B meth 26.2 3.2E+02 0.007 23.5 7.1 73 34-114 23-111 (187)
175 COG0345 ProC Pyrroline-5-carbo 26.1 2.7E+02 0.006 25.0 7.0 78 49-140 4-84 (266)
176 PLN02828 formyltetrahydrofolat 25.9 1.1E+02 0.0024 27.6 4.4 44 51-98 77-127 (268)
177 cd08170 GlyDH Glycerol dehydro 25.9 1.1E+02 0.0024 27.8 4.5 42 44-90 76-117 (351)
178 PRK06027 purU formyltetrahydro 25.6 1.2E+02 0.0026 27.3 4.6 48 49-100 94-143 (286)
179 TIGR00502 nagB glucosamine-6-p 25.3 1.3E+02 0.0029 26.2 4.7 46 28-73 8-60 (259)
180 PRK03092 ribose-phosphate pyro 25.3 1.1E+02 0.0025 27.7 4.5 48 52-103 211-263 (304)
181 KOG0886 40S ribosomal protein 25.1 42 0.0009 28.0 1.4 56 122-185 71-130 (167)
182 cd08294 leukotriene_B4_DH_like 25.1 4.4E+02 0.0095 22.6 8.8 50 43-96 140-190 (329)
183 PRK06719 precorrin-2 dehydroge 25.0 1.2E+02 0.0026 24.7 4.1 34 45-83 12-45 (157)
184 PRK15451 tRNA cmo(5)U34 methyl 24.9 2.4E+02 0.0052 24.2 6.2 59 29-92 39-100 (247)
185 TIGR00129 fdhD_narQ formate de 24.8 3.6E+02 0.0078 23.6 7.4 75 29-109 152-229 (237)
186 PF11734 TilS_C: TilS substrat 24.8 15 0.00033 26.2 -1.1 27 137-163 22-50 (74)
187 cd08236 sugar_DH NAD(P)-depend 24.8 4.7E+02 0.01 22.7 9.2 50 43-96 156-206 (343)
188 PRK00455 pyrE orotate phosphor 24.7 98 0.0021 26.0 3.7 50 52-103 123-173 (202)
189 COG1587 HemD Uroporphyrinogen- 24.6 2.1E+02 0.0047 24.6 5.9 61 39-100 43-103 (248)
190 TIGR02469 CbiT precorrin-6Y C5 24.5 90 0.002 22.7 3.1 41 44-91 17-60 (124)
191 PRK09423 gldA glycerol dehydro 24.5 1.4E+02 0.0031 27.3 5.0 38 45-87 84-121 (366)
192 TIGR03249 KdgD 5-dehydro-4-deo 24.4 1.7E+02 0.0036 26.1 5.3 54 30-84 57-110 (296)
193 PRK02122 glucosamine-6-phospha 24.3 1.2E+02 0.0026 30.7 4.7 47 28-74 35-87 (652)
194 cd08281 liver_ADH_like1 Zinc-d 23.8 3.9E+02 0.0085 23.9 7.7 50 43-96 188-238 (371)
195 PF09911 DUF2140: Uncharacteri 23.6 70 0.0015 27.1 2.6 14 154-167 103-116 (187)
196 PLN02417 dihydrodipicolinate s 23.5 1.8E+02 0.0039 25.7 5.3 54 30-83 53-106 (280)
197 PF13604 AAA_30: AAA domain; P 23.5 1.6E+02 0.0035 24.5 4.8 44 53-99 28-72 (196)
198 cd08196 DHQS-like1 Dehydroquin 23.4 3.4E+02 0.0073 25.1 7.2 40 43-85 74-113 (346)
199 PF14903 WG_beta_rep: WG conta 23.4 87 0.0019 18.2 2.3 16 155-170 3-18 (35)
200 TIGR01496 DHPS dihydropteroate 23.3 3.2E+02 0.007 24.0 6.8 61 35-99 24-100 (257)
201 PRK13753 dihydropteroate synth 23.2 4.3E+02 0.0094 23.9 7.7 63 34-98 25-100 (279)
202 PRK09880 L-idonate 5-dehydroge 23.1 5.2E+02 0.011 22.8 9.0 57 36-96 157-216 (343)
203 TIGR02825 B4_12hDH leukotriene 23.0 4.6E+02 0.0099 22.7 7.8 50 43-96 135-185 (325)
204 cd01425 RPS2 Ribosomal protein 22.9 4.5E+02 0.0099 22.0 8.6 24 45-68 55-78 (193)
205 PRK05114 hypothetical protein; 22.9 26 0.00057 24.7 -0.1 33 38-70 14-46 (59)
206 cd08550 GlyDH-like Glycerol_de 22.9 1.6E+02 0.0035 26.8 5.0 41 45-90 77-117 (349)
207 cd03769 SR_IS607_transposase_l 22.9 3.7E+02 0.0081 21.0 8.2 71 28-102 15-98 (134)
208 PRK06988 putative formyltransf 22.9 2.1E+02 0.0045 26.0 5.6 47 49-100 5-61 (312)
209 TIGR03169 Nterm_to_SelD pyridi 22.8 3.3E+02 0.0071 24.3 6.9 57 47-103 146-214 (364)
210 PF04430 DUF498: Protein of un 22.7 71 0.0015 24.4 2.2 51 46-97 53-105 (110)
211 cd05213 NAD_bind_Glutamyl_tRNA 22.6 3.2E+02 0.0068 24.5 6.8 50 46-99 178-228 (311)
212 PRK13011 formyltetrahydrofolat 22.5 1.3E+02 0.0028 27.2 4.2 68 29-100 63-143 (286)
213 PRK13010 purU formyltetrahydro 22.4 1.7E+02 0.0037 26.5 5.0 68 29-100 67-147 (289)
214 COG2242 CobL Precorrin-6B meth 22.4 2.6E+02 0.0057 24.0 5.8 48 46-95 102-153 (187)
215 PRK08507 prephenate dehydrogen 22.2 2.7E+02 0.0058 24.2 6.1 42 52-96 6-47 (275)
216 PRK07417 arogenate dehydrogena 22.2 2E+02 0.0044 25.1 5.4 39 52-95 6-44 (279)
217 cd08234 threonine_DH_like L-th 22.0 4.6E+02 0.0099 22.6 7.5 49 44-96 157-206 (334)
218 TIGR03693 ocin_ThiF_like putat 22.0 60 0.0013 32.9 2.1 34 27-61 416-459 (637)
219 PF08407 Chitin_synth_1N: Chit 21.7 51 0.0011 24.5 1.2 12 159-170 13-24 (79)
220 PF12847 Methyltransf_18: Meth 21.6 1.2E+02 0.0025 21.9 3.2 36 50-92 8-43 (112)
221 PLN02331 phosphoribosylglycina 21.6 1.7E+02 0.0037 25.2 4.6 48 49-100 4-55 (207)
222 PTZ00285 glucosamine-6-phospha 21.5 1.8E+02 0.0039 25.3 4.8 45 28-72 8-59 (253)
223 PRK13811 orotate phosphoribosy 21.3 1.1E+02 0.0023 25.3 3.2 50 52-103 114-164 (170)
224 COG3051 CitF Citrate lyase, al 21.3 3.5E+02 0.0076 26.2 6.9 43 31-73 252-300 (513)
225 PRK06975 bifunctional uroporph 20.8 1.2E+02 0.0027 30.5 4.0 51 48-98 195-248 (656)
226 PRK08125 bifunctional UDP-gluc 20.8 2.9E+02 0.0062 27.5 6.6 49 49-102 3-61 (660)
227 PRK09424 pntA NAD(P) transhydr 20.8 6.7E+02 0.014 24.7 9.0 49 45-98 164-212 (509)
228 PF03033 Glyco_transf_28: Glyc 20.7 2E+02 0.0044 21.5 4.5 51 49-102 3-53 (139)
229 TIGR00150 HI0065_YjeE ATPase, 20.7 2.5E+02 0.0054 22.5 5.1 34 34-69 9-46 (133)
230 cd08549 G1PDH_related Glycerol 20.6 2.2E+02 0.0047 25.8 5.3 36 45-85 80-115 (332)
231 PRK10669 putative cation:proto 20.6 2.5E+02 0.0054 27.3 6.0 49 46-99 417-465 (558)
232 PF02502 LacAB_rpiB: Ribose/Ga 20.5 4.4E+02 0.0096 21.3 6.6 56 36-100 44-105 (140)
233 PRK04457 spermidine synthase; 20.5 94 0.002 27.3 2.9 38 49-93 72-109 (262)
234 PF03141 Methyltransf_29: Puta 20.5 61 0.0013 31.9 1.8 58 49-113 119-185 (506)
235 cd04887 ACT_MalLac-Enz ACT_Mal 20.4 2.8E+02 0.006 18.6 5.9 59 128-192 10-70 (74)
236 PRK13010 purU formyltetrahydro 20.3 3.9E+02 0.0085 24.1 6.9 68 85-161 25-105 (289)
237 KOG0846 Mitochondrial/chloropl 20.3 3.9E+02 0.0084 24.4 6.6 34 105-141 135-168 (274)
238 cd08182 HEPD Hydroxyethylphosp 20.3 2.5E+02 0.0054 25.7 5.7 44 45-90 77-139 (367)
239 COG1924 Activator of 2-hydroxy 20.2 51 0.0011 31.5 1.1 21 42-62 130-150 (396)
240 PF00465 Fe-ADH: Iron-containi 20.2 1.9E+02 0.0042 26.3 4.9 40 45-86 78-133 (366)
241 PF00701 DHDPS: Dihydrodipicol 20.1 1.6E+02 0.0035 25.8 4.3 52 30-82 53-105 (289)
No 1
>PLN02384 ribose-5-phosphate isomerase
Probab=100.00 E-value=1.3e-61 Score=427.10 Aligned_cols=214 Identities=75% Similarity=1.141 Sum_probs=190.9
Q ss_pred CCcCCCccccchhh--hhhccCCCCCC-CCCHHHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCE
Q 036939 1 MAVGFPQFKPSSME--NILSSLSPTSV-GLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNI 77 (215)
Q Consensus 1 ~~~~~~~~~~~~~~--~~~~~~~~~~~-m~~~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i 77 (215)
||..||.|--+--. .+-+-|++.|+ .|+++++|+++|++|++||++||+||||||||+.+|+++|++|++++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~K~~aA~~A~~~V~~gmvVGLGTGSTv~~~I~~La~r~~~~~l~~I 80 (264)
T PLN02384 1 MAIAYPPFIGSEKDSMEVGSMLSPSSPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNI 80 (264)
T ss_pred CCCCCCccccccccchhhcCcCCCCCCCCCCHHHHHHHHHHHHHHhccCCCEEEecchHHHHHHHHHHHHhhhhccccce
Confidence 78999999766422 24454555444 2457889999999999999999999999999999999999999988888789
Q ss_pred EEecCcHHHHHHHHHCCCCeeecCCCCceeEEEecCCcccC---------------------------------------
Q 036939 78 VGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDP--------------------------------------- 118 (215)
Q Consensus 78 ~~V~tS~~t~~~~~~~Gi~v~~l~~~~~iDl~iDGaDeVd~--------------------------------------- 118 (215)
++||||.+|+.+|+++|||+.++++++++|+|||||||||+
T Consensus 81 ~~VpTS~~T~~~a~~~GIpl~~l~~v~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~~A~~~IiI~DesK~V~~Lg 160 (264)
T PLN02384 81 IGIPTSKKTHEQAVSLGIPLSDLDSHPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDESKLVKHIG 160 (264)
T ss_pred EEEcCcHHHHHHHHHcCCcEeccccCCcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHHhcCeEEEEEeCcceecccC
Confidence 99999999999999999999999999999999999999998
Q ss_pred --CCCeeEEEccccHHHHHHHHhcchhcCCCceeecc------eeEecCCCEEEeecCCCCCCCHHHHHHHHccccCeEE
Q 036939 119 --GLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRT------CYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVV 190 (215)
Q Consensus 119 --K~plPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR~------p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i~pGVV 190 (215)
+|||||||+|++|.+|.++|+++|...|+.+++|+ |++|||||||+||+|+.++.||++++++|++| ||||
T Consensus 161 ~~~~plPVEV~p~a~~~v~~~L~~l~~~~g~~~~lR~~~~g~~p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i-pGVV 239 (264)
T PLN02384 161 GSGLAMPVEVVPFCWKFTAEKLQSLFEYAGCVAKLRTKNNGEEPFVTDNGNYIVDLYFKRDIGDLKVASDAILRL-AGVV 239 (264)
T ss_pred CCCCCEEEEECccHHHHHHHHHHHHhhccCCceEEeccCCCCCcEECCCCCEEEEecCCCCCCCHHHHHHHHhCC-CcEe
Confidence 14899999999999999999998655578899994 89999999999999983389999999999999 9999
Q ss_pred eeeeccccccEEEEEcCCCeEEecC
Q 036939 191 EHGMFLDMATTVIIVGKLGVTIKNK 215 (215)
Q Consensus 191 e~GLF~~~a~~vivg~~~Gv~~~~~ 215 (215)
|||||.++++.|++|+++|+++-.|
T Consensus 240 E~GLF~~~a~~vivg~~~Gv~~~~~ 264 (264)
T PLN02384 240 EHGMFLDMATTVIVAGELGVTIKDK 264 (264)
T ss_pred ccCcccCcCCEEEEEcCCceEEeCC
Confidence 9999999999999999999877554
No 2
>PRK13978 ribose-5-phosphate isomerase A; Provisional
Probab=100.00 E-value=2.6e-61 Score=418.24 Aligned_cols=183 Identities=33% Similarity=0.470 Sum_probs=173.7
Q ss_pred CCCHHHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCCCCc
Q 036939 26 GLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPV 105 (215)
Q Consensus 26 m~~~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~~~~ 105 (215)
||+++++|+++|++|++||++||+||||||||+.+|+++|++|++++++ ++++||||.+|+.+|+++|||+++++++++
T Consensus 1 ~m~~~~~K~~aa~~A~~~V~~gmvvGLGTGSTv~~~i~~L~~~~~~~~l-~i~~VptS~~t~~~a~~~Gipl~~l~~~~~ 79 (228)
T PRK13978 1 MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGY-NITGVCTSNKIAFLAKELGIKICEINDVDH 79 (228)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCEEEeCchHHHHHHHHHHHHHhhccCc-cEEEEeCcHHHHHHHHHcCCcEechhhCCc
Confidence 7788899999999999999999999999999999999999999988888 699999999999999999999999999999
Q ss_pred eeEEEecCCcccC----------------------------------------CCCeeEEEccccHHHHHHHHhcchhcC
Q 036939 106 IDLAIDGADEVDP----------------------------------------GLAVPVEVVPVCWKFTANRFPDLFKDC 145 (215)
Q Consensus 106 iDl~iDGaDeVd~----------------------------------------K~plPVEV~P~a~~~v~~~l~~l~~~~ 145 (215)
+|+|||||||||+ +|||||||+||+|++|.++|+++
T Consensus 80 iDiaiDGADevd~~lnlIKGgGgal~rEKiva~~A~~~iii~D~sK~v~~Lg~~~plPVEV~p~~~~~v~~~l~~l---- 155 (228)
T PRK13978 80 IDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESY---- 155 (228)
T ss_pred eeEEEecCceecCCccEEecCcHHHHHHHHHHHhcCcEEEEEeCcceecccCCCCCeEEEEcccHHHHHHHHHHHc----
Confidence 9999999999998 36999999999999999999997
Q ss_pred C-Cceeecc----eeEecCCCEEEeecCCCCCCCHHHHHHHHccccCeEEeeeeccccccEEEEEcCCCeEEecC
Q 036939 146 G-CVAKLRT----CYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIKNK 215 (215)
Q Consensus 146 G-~~~~lR~----p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i~pGVVe~GLF~~~a~~vivg~~~Gv~~~~~ 215 (215)
| ..+.+|. |++|||||||+||+|+. +.||++++++|++| |||||||||.++++.+++|+++|+++++|
T Consensus 156 g~~~~~~R~~~~~p~vTDnGN~IlD~~f~~-i~dp~~l~~~L~~i-pGVVe~GlF~~~~~~viv~~~~G~~~~~~ 228 (228)
T PRK13978 156 ADIKVERRVNEDVAFITDNGNYILDCKLPK-GIDPYKFHEYLIHL-TGVFETGYFLDMADQVIVGTQEGVKILEK 228 (228)
T ss_pred CCCCcEEEecCCCceECCCCcEEEEecCCC-cCCHHHHHHHHhcC-CcEeeeCCccCcCCEEEEEcCCceEEeCC
Confidence 5 4778885 99999999999999996 89999999999999 99999999999999999999999988875
No 3
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-59 Score=406.49 Aligned_cols=181 Identities=45% Similarity=0.675 Sum_probs=168.7
Q ss_pred CCHHHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCCCCce
Q 036939 27 LTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVI 106 (215)
Q Consensus 27 ~~~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~~~~i 106 (215)
|+++++|+++|++|++||++||+||||||||+.||+++|+++.+.+ + ++++||||.+|+.+|+++||++.++++++++
T Consensus 1 ~~~~~~K~~aa~~A~~~v~~gmviGlGTGST~~~fI~~Lg~~~~~e-~-~i~~V~TS~~t~~l~~~~GI~v~~l~~~~~l 78 (227)
T COG0120 1 MDQDELKKAAAKAALEYVKDGMVIGLGTGSTAAYFIEALGRRVKGE-L-DIGGVPTSFQTEELARELGIPVSSLNEVDSL 78 (227)
T ss_pred CchHHHHHHHHHHHHHHhcCCCEEEEcCcHHHHHHHHHHHHhhccC-c-cEEEEeCCHHHHHHHHHcCCeecCccccCcc
Confidence 4578899999999999999999999999999999999999855544 5 7999999999999999999999999999999
Q ss_pred eEEEecCCcccC---------------------------------------CCCeeEEEccccHHHHHHHHhcchhcCCC
Q 036939 107 DLAIDGADEVDP---------------------------------------GLAVPVEVVPVCWKFTANRFPDLFKDCGC 147 (215)
Q Consensus 107 Dl~iDGaDeVd~---------------------------------------K~plPVEV~P~a~~~v~~~l~~l~~~~G~ 147 (215)
|+|||||||||+ ||||||||+||+|.+|+++++++ |+
T Consensus 79 Dl~iDGADEvd~~~~lIKGGGgAl~rEKIva~~ak~~IvIvDesKlV~~LG~fplPVEVip~a~~~v~r~l~~~----g~ 154 (227)
T COG0120 79 DLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVDESKLVEVLGKFPLPVEVIPFARSAVLRKLEKL----GG 154 (227)
T ss_pred ceEeecccccCCCCCEEccChHHHHHHHHHHHhcCeEEEEEeCccchhhcCCCCcCEEEchhHHHHHHHHHHHh----CC
Confidence 999999999998 47999999999999999999987 99
Q ss_pred ceeecc------eeEecCCCEEEeecCCCCCCCHHHHHHHHccccCeEEeeeeccccccEEEEEcCCC-eEEecC
Q 036939 148 VAKLRT------CYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLG-VTIKNK 215 (215)
Q Consensus 148 ~~~lR~------p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i~pGVVe~GLF~~~a~~vivg~~~G-v~~~~~ 215 (215)
++.||+ |++|||||||+||+|+. +.||++|+++|++| |||||||||.++++.+|+++.+| ++++++
T Consensus 155 ~~~lR~~~~k~GpviTDnGN~IlDv~~~~-i~dp~~le~~l~~I-pGVVE~GlF~~~~~~~ii~g~~~~v~~~~~ 227 (227)
T COG0120 155 KPTLREGEGKDGPVITDNGNYILDVHFGR-IEDPEELEKELNAI-PGVVENGLFAGRAADVIIAGTDGGVKILEK 227 (227)
T ss_pred CccccccccCCCCEEeeCCCEEEEecCCC-cCCHHHHHHHHhCC-CCEEEecccccccccEEEEeCCCCEEEecC
Confidence 999994 89999999999999996 99999999999999 99999999999887777777776 888764
No 4
>PRK00702 ribose-5-phosphate isomerase A; Provisional
Probab=100.00 E-value=1.8e-54 Score=374.10 Aligned_cols=178 Identities=44% Similarity=0.676 Sum_probs=167.2
Q ss_pred CHHHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCCCCcee
Q 036939 28 TQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVID 107 (215)
Q Consensus 28 ~~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~~~~iD 107 (215)
+++++|+++|++|++||++||+||||||||+.+++++|+++.+++ + ++++||||.+++.+|++.|++++++++++++|
T Consensus 2 ~~~~~K~~IA~~Aa~lI~dg~~IgLgsGST~~~l~~~L~~~~~~~-~-~itvVt~S~~~a~~l~~~gi~v~~l~~~~~iD 79 (220)
T PRK00702 2 TQDELKKAAAEAAAEYVEDGMIVGLGTGSTAAYFIDALGERVKEG-L-IIGGVPTSEASTELAKELGIPLFDLNEVDSLD 79 (220)
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHhhhccC-C-CEEEECCcHHHHHHHHhCCCeEEcHHHCCccC
Confidence 468899999999999999999999999999999999999876555 5 69999999999999999999999999999999
Q ss_pred EEEecCCcccC---------------------------------------CCCeeEEEccccHHHHHHHHhcchhcCCCc
Q 036939 108 LAIDGADEVDP---------------------------------------GLAVPVEVVPVCWKFTANRFPDLFKDCGCV 148 (215)
Q Consensus 108 l~iDGaDeVd~---------------------------------------K~plPVEV~P~a~~~v~~~l~~l~~~~G~~ 148 (215)
+|||||||||+ ++|+||||+||+|++|.++|+++ |+.
T Consensus 80 ~afdGaD~vd~~~~~ikg~g~a~~~ekiva~~A~~~vil~D~sK~v~~lg~~~lPvEV~p~~~~~v~~~l~~~----g~~ 155 (220)
T PRK00702 80 LYVDGADEIDPHLNLIKGGGAALTREKIVAAAAKRFICIVDESKLVDVLGKFPLPVEVIPFARSAVARELEKL----GGQ 155 (220)
T ss_pred EEEECCCeECCCCCcEECcHHHHHHHHHHHHhcCcEEEEEEcchhhhhcCCCCccEEECccHHHHHHHHHHHh----CCc
Confidence 99999999997 25999999999999999999997 889
Q ss_pred eeecc--eeEecCCCEEEeecCCCCCCCHHHHHHHHccccCeEEeeeeccccccEEEEEcCCCeEEe
Q 036939 149 AKLRT--CYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIK 213 (215)
Q Consensus 149 ~~lR~--p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i~pGVVe~GLF~~~a~~vivg~~~Gv~~~ 213 (215)
++||+ |++|||||||+||+|+. +.||++++++|++| |||||||||.++++.||+|++||++++
T Consensus 156 ~~~R~~~p~vTd~Gn~IiD~~~~~-i~~p~~l~~~l~~i-~GVve~GlF~~~~~~v~~~~~~g~~~~ 220 (220)
T PRK00702 156 PELRMDEPVVTDNGNYILDVHFGR-IPDPEALEKELNNI-PGVVEHGLFANRADVVLVGTPDGVKTL 220 (220)
T ss_pred ceEeCCCCEECCCCCEEEEecCCC-cCCHHHHHHHhcCC-CcEeeeccCccCCCEEEEEcCCcEEeC
Confidence 99996 99999999999999995 99999999999999 999999999999999999999997653
No 5
>TIGR00021 rpiA ribose 5-phosphate isomerase. This model describes ribose 5-phosphate isomerase, an enzyme of the non-oxidative branch of the pentose phosphate pathway.
Probab=100.00 E-value=2.9e-52 Score=359.98 Aligned_cols=173 Identities=51% Similarity=0.763 Sum_probs=163.3
Q ss_pred HHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCCCCceeEEEe
Q 036939 32 LKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAID 111 (215)
Q Consensus 32 ~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~~~~iDl~iD 111 (215)
+|+++|++|++||++||+||||||||+.+++++|+++.+++++ ++++||||.+++.+|+++|++++++++++++|+|||
T Consensus 1 ~K~~IA~~A~~~I~~g~~I~ldsGST~~~~~~~L~~~~~~~~l-~itvVt~S~~~a~~l~~~gi~v~~l~~~~~iDiafd 79 (218)
T TIGR00021 1 LKRAAAEAAAEYVEDGMVVGLGTGSTVAYFIEALGERVKQEGL-DIVGVPTSKQTAELARELGIPLSSLDEVPELDLAID 79 (218)
T ss_pred CHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHHHHhhhccCC-CEEEEeCCHHHHHHHHHCCCCEEcHhHCCccCEEEE
Confidence 4899999999999999999999999999999999988777777 799999999999999999999999999999999999
Q ss_pred cCCcccC---------------------------------------CCCeeEEEccccHHHHHHHHhcchhcCCCceeec
Q 036939 112 GADEVDP---------------------------------------GLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLR 152 (215)
Q Consensus 112 GaDeVd~---------------------------------------K~plPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR 152 (215)
|||+||+ ++||||||+|++|.+|+++|+++ |+.+++|
T Consensus 80 GaD~id~~~~~ikg~g~a~~~eKiia~~A~~~i~l~D~sK~~~~lg~~plPvEV~p~~~~~v~~~l~~~----g~~~~~R 155 (218)
T TIGR00021 80 GADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESKLVDKLGKFPLPVEVVPFAWKAVARKLEKL----GGEPTLR 155 (218)
T ss_pred CCCeECCCCCEecccHHHHHHHHHHHHhhCcEEEEEEchhhhcccCCCCccEEECccHHHHHHHHHHHc----CCCcEEe
Confidence 9999997 35999999999999999999996 8899999
Q ss_pred c-----eeEecCCCEEEeecCCCCCCCHHHHHHHHccccCeEEeeeeccccccEEEEEcCCCe
Q 036939 153 T-----CYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGV 210 (215)
Q Consensus 153 ~-----p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i~pGVVe~GLF~~~a~~vivg~~~Gv 210 (215)
+ |++|||||||+|++|+.++.||++++++|++| |||||||||.++++.+++|+++|+
T Consensus 156 ~~~~~~p~vTdnGN~IiD~~~~~~~~d~~~l~~~l~~i-~GVve~GlF~~~~~~v~~~~~~g~ 217 (218)
T TIGR00021 156 QGNKGGPVVTDNGNYILDCHFGKIIPDPEALEEELKSI-PGVVETGLFIDMADTVIVGTKDGV 217 (218)
T ss_pred ecCCCCcEECCCCCEEEEeeCCCCCCCHHHHHHHHhcC-CCEEEeeeecCCCCEEEEEeCCCc
Confidence 5 89999999999999985489999999999999 999999999999999999999984
No 6
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.3e-51 Score=354.03 Aligned_cols=189 Identities=52% Similarity=0.830 Sum_probs=176.5
Q ss_pred CCCCCHHHHHHHHHHHHHh-cCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCC
Q 036939 24 SVGLTQDELKKIAANKSVE-FVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDS 102 (215)
Q Consensus 24 ~~m~~~~~~K~~aA~~A~~-~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~ 102 (215)
+.+.+++++||+||++|++ ++++||+||||||||+.|.+++|++++.++.+.++++||||++|++++.++|||+.+++.
T Consensus 19 ~~~~~~e~~kr~Aa~~avd~~~k~g~ViGiGsGstv~~~v~~i~q~l~~~~l~~vvgVPts~~s~q~~~~~gi~l~~~d~ 98 (261)
T KOG3075|consen 19 ESLSPQEEAKRLAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPTSFRSAQLALEYGIPLSDLDS 98 (261)
T ss_pred cccCchHHHHHHHHhhhhhhhccCCeEEEecCccHHHHHHHHHHHHhcCCCcCceEecccchhhHHHHHhcCCccccCCC
Confidence 5577899999999999998 888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEecCCcccC--------------------------------C----------CCeeEEEccccHHHHHHHHhc
Q 036939 103 HPVIDLAIDGADEVDP--------------------------------G----------LAVPVEVVPVCWKFTANRFPD 140 (215)
Q Consensus 103 ~~~iDl~iDGaDeVd~--------------------------------K----------~plPVEV~P~a~~~v~~~l~~ 140 (215)
++.+|+|||||||||+ | ..+||||+|++|..+.++|.+
T Consensus 99 hp~iDlaidgADEvd~nln~ikggGg~l~qEk~v~~~akkfiviad~~k~~~~lg~~~~~gvPvEvvpl~~~~l~~~l~~ 178 (261)
T KOG3075|consen 99 HPVIDLAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADSRKGSKGLGGSGKQGVPVEVVPLAWLKLLENLSE 178 (261)
T ss_pred CceeEEEecCchhhCcCcceEEeccchhhHHHHHHHhhhceEEEeeccccchhhcccccCceeeeehhhHHHHHHHhhhh
Confidence 9999999999999998 1 259999999999999999998
Q ss_pred chhcCCCceeecc-------eeEecCCCEEEeecCCCCCCCHHHHHHHHccccCeEEeeeeccccccEEEEEcCCC-eEE
Q 036939 141 LFKDCGCVAKLRT-------CYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLG-VTI 212 (215)
Q Consensus 141 l~~~~G~~~~lR~-------p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i~pGVVe~GLF~~~a~~vivg~~~G-v~~ 212 (215)
+ . .|+.+.||+ |++|||||||+|++|+.++.|+.+++.+++.+ |||||||||+++++.+||++++| +.+
T Consensus 179 ~-~-~g~~~~lR~g~~~k~~P~VTDngN~IiDv~fe~~i~~~~~~~~~i~~~-pGVVe~GLfi~~~~~v~ia~~~gsv~v 255 (261)
T KOG3075|consen 179 F-S-FGCEAKLRMGAEGKAGPYVTDNGNFIIDVQFETPIRDLNAASTSIKKI-PGVVEHGLFIGMADTVIIAESDGSVSV 255 (261)
T ss_pred h-h-ccchheecccccccCCCeEeeCCCeEEEEEeecccCCHHHHHHHHhhc-CCccccceEeecccEEEEEecCCccce
Confidence 2 2 499999995 99999999999999976799999999999999 99999999999999999999999 766
Q ss_pred ecC
Q 036939 213 KNK 215 (215)
Q Consensus 213 ~~~ 215 (215)
.+|
T Consensus 256 ~~~ 258 (261)
T KOG3075|consen 256 TKK 258 (261)
T ss_pred eec
Confidence 543
No 7
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. This reaction leads to the conversion of phosphosugars into glycolysis intermediates, which are precursors for the synthesis of amino acids, vitamins, nucleotides, and cell wall components. In plants, RPI is part of the Calvin cycle as ribulose 5-phosphate is the carbon dioxide receptor in the first dark reaction of photosynthesis. There are two unrelated types of RPIs (A and B), which catalyze the same reaction, at least one type of RPI is present in an organism. RPI_A is more widely distributed than RPI_B in bacteria, eukaryotes, and archaea.
Probab=100.00 E-value=1.1e-48 Score=336.05 Aligned_cols=168 Identities=48% Similarity=0.783 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCCCCceeEEEe
Q 036939 32 LKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAID 111 (215)
Q Consensus 32 ~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~~~~iDl~iD 111 (215)
+|+++|++|+++|++||+||||||||+.+++++|+++.+.+.. ++++||+|.+++.++.+.|++++.+.+..++|+|||
T Consensus 1 ~K~~IA~~A~~~I~~g~~I~ldsGST~~~l~~~L~~~~~~~~~-~itvVTnS~~~a~~l~~~~i~vi~lg~~~~~D~af~ 79 (213)
T cd01398 1 LKRAAARAAVDYVEDGMVIGLGTGSTVAYFIEALGERVREEGL-NIVGVPTSFQTEELARELGIPLTDLDEVPRLDLAID 79 (213)
T ss_pred CHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHhhhccCC-CEEEEeCcHHHHHHHHhCCCeEEeCCCccccCEEEE
Confidence 4899999999999999999999999999999999887554433 799999999999999888999999987779999999
Q ss_pred cCCcccC---------------------------------------CCCeeEEEccccHHHHHHHHhcchhcCCCceeec
Q 036939 112 GADEVDP---------------------------------------GLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLR 152 (215)
Q Consensus 112 GaDeVd~---------------------------------------K~plPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR 152 (215)
|||++|+ ++||||||+|++|.+|+++|+++ |+.++||
T Consensus 80 Gad~id~~~~~~~~~~~a~~kek~i~~~a~~~illaD~sK~~~~l~~~~lPvEV~p~~~~~v~~~l~~~----g~~~~~R 155 (213)
T cd01398 80 GADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKLVERLGEFPLPVEVVPFAWSYVARELEKL----GGKPVLR 155 (213)
T ss_pred CCCcCCCCcCcccChHHHHHHHHHHHHhcCeEEEEEecchhcccCCCCCeeEEEChhhHHHHHHHHHHc----CCCcEEc
Confidence 9999996 25999999999999999999997 8999999
Q ss_pred c------eeEecCCCEEEeecCCCCCCCHHHHHHHHccccCeEEeeeeccccccEEEEEc
Q 036939 153 T------CYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVG 206 (215)
Q Consensus 153 ~------p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i~pGVVe~GLF~~~a~~vivg~ 206 (215)
+ |++|||||||+|++|++ +.||.+++++|++| |||||||||.++++.|++|+
T Consensus 156 ~~~~~~~p~~Td~gn~i~D~~~~~-~~~~~~l~~~l~~i-~GVve~GlF~~~~~~v~~~~ 213 (213)
T cd01398 156 EGSGKGGPVVTDNGNYILDVHFGT-IEDPEALEKELKSI-PGVVEHGLFLNMADEVIVGT 213 (213)
T ss_pred ccCCCCCcEECCCCCEEEEecCCC-CCCHHHHHHHHhcC-CCeeeeCCCcCCCCEEEEeC
Confidence 6 89999999999999996 89999999999999 99999999999999999984
No 8
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []. This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....
Probab=100.00 E-value=2.4e-44 Score=301.12 Aligned_cols=129 Identities=50% Similarity=0.777 Sum_probs=112.3
Q ss_pred EEEecCcHHHHHHHHHCCCCeeecCCCCceeEEEecCCcccC--------------------------------------
Q 036939 77 IVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDP-------------------------------------- 118 (215)
Q Consensus 77 i~~V~tS~~t~~~~~~~Gi~v~~l~~~~~iDl~iDGaDeVd~-------------------------------------- 118 (215)
|++||||.+|+.+|+++|||++++++++++|+|||||||||+
T Consensus 1 I~~V~tS~~T~~~a~~~Gi~l~~~~~~~~iDl~iDGaDevd~~l~lIKGgGgallrEKiva~~a~~~I~i~DesK~v~~L 80 (173)
T PF06026_consen 1 IVGVPTSEATELLARKLGIPLVDLDEVDRIDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKRFIIIVDESKLVEKL 80 (173)
T ss_dssp EEEEESSHHHHHHHHHTT-EBE-GGGSSSEEEEEEE-SEEETTSEEE--TTS-HHHHHHHHHTEEEEEEEEEGGGBESSB
T ss_pred CEEECChHHHHHHHHHcCCcEEccccCCcceEEEECchhhcCCCCEEECCCccchhhhhHHHhhceEEEEECCCcEeeEc
Confidence 689999999999999999999999999999999999999998
Q ss_pred -CCCeeEEEccccHHHHHHHHhc-chhcCCCceeecc----eeEecCCCEEEeecCCCCCCCHHHHHHHHccccCeEEee
Q 036939 119 -GLAVPVEVVPVCWKFTANRFPD-LFKDCGCVAKLRT----CYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEH 192 (215)
Q Consensus 119 -K~plPVEV~P~a~~~v~~~l~~-l~~~~G~~~~lR~----p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i~pGVVe~ 192 (215)
++||||||+||||.+|+++|++ + |++++||+ |++|||||||+||+|++ +.||++++++|++| ||||||
T Consensus 81 g~~plPvEV~p~a~~~v~~~l~~~~----G~~~~lR~~~~~p~vTDnGN~IlD~~f~~-i~d~~~l~~~L~~i-~GVVe~ 154 (173)
T PF06026_consen 81 GKFPLPVEVVPFAWSYVLRRLKELL----GGKPVLRMASGGPFVTDNGNYILDVHFGP-IDDPEELERELKSI-PGVVET 154 (173)
T ss_dssp TSS-EEEEE-GGGHHHHHHHHHHTT----T-EEEE-EETTEE-B-TTS-EEEEEESSS-BSSHHHHHHHHHTS-TTEEEE
T ss_pred CCCceeEEEcHHHHHHHHHHHHHhc----CCCceEccCCCCCEEeCCCCEEEEecCCC-CCCHHHHHHHHhCC-CCEEeE
Confidence 3699999999999999999998 5 99999998 99999999999999995 99999999999999 999999
Q ss_pred eeccccccEEEEEcCCCeE
Q 036939 193 GMFLDMATTVIIVGKLGVT 211 (215)
Q Consensus 193 GLF~~~a~~vivg~~~Gv~ 211 (215)
|||.++++.+|+|+++|++
T Consensus 155 GlF~~~~~~viv~~~~G~~ 173 (173)
T PF06026_consen 155 GLFLGMADKVIVGGEDGVK 173 (173)
T ss_dssp SEE-SS-SEEEEEETTEEE
T ss_pred CcCcCcCCEEEEEcCCCcC
Confidence 9999999999999999974
No 9
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=99.35 E-value=2.6e-12 Score=105.85 Aligned_cols=84 Identities=20% Similarity=0.225 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHC-CCCee----------
Q 036939 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL-GIPLS---------- 98 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~-Gi~v~---------- 98 (215)
.++|+++|++|+++|++|++|.||+|||+.+++++|.++ +++++||+|...+..+.+. +++++
T Consensus 3 ~~~K~~IA~~A~~~I~~~~~Ifld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~~~vi~~GG~~~~~~ 76 (161)
T PF00455_consen 3 AEEKRAIARKAASLIEDGDTIFLDSGTTTLELAKYLPDK------KNLTVVTNSLPIANELSENPNIEVILLGGEVNPKS 76 (161)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECchHHHHHHHHhhcC------CceEEEECCHHHHHHHHhcCceEEEEeCCEEEcCC
Confidence 478999999999999999999999999999999999763 2799999999999999887 77766
Q ss_pred ----------ecCCCCceeEEEecCCcccCCC
Q 036939 99 ----------DLDSHPVIDLAIDGADEVDPGL 120 (215)
Q Consensus 99 ----------~l~~~~~iDl~iDGaDeVd~K~ 120 (215)
.++++ ++|++|-||++++.+.
T Consensus 77 ~~~~G~~a~~~l~~~-~~d~afi~~~gi~~~~ 107 (161)
T PF00455_consen 77 LSFVGPIALEALRQF-RFDKAFIGADGISEEG 107 (161)
T ss_pred CcEECchHHHHHHhh-ccceEEecccEecCCC
Confidence 45566 8999999999999743
No 10
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=99.20 E-value=3e-11 Score=105.95 Aligned_cols=85 Identities=18% Similarity=0.077 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHC-CCCee---------
Q 036939 29 QDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL-GIPLS--------- 98 (215)
Q Consensus 29 ~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~-Gi~v~--------- 98 (215)
..++|+++|++|+++|++|++|.||+|||+.+++++|.+. .++++||+|...+..+.+. +++++
T Consensus 75 ~~~~K~~IA~~Aa~lI~~g~tIflD~GtT~~~la~~L~~~------~~ltvvTnsl~i~~~l~~~~~~~villGG~~~~~ 148 (252)
T PRK10681 75 LVEEKRRAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNE------LPFTAVCYSLNTFLALQEKPHCRAILCGGEFHAS 148 (252)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCccHHHHHHhcCCC------CCeEEEECCHHHHHHHhhCCCCEEEEECcEEecC
Confidence 3467999999999999999999999999999999999642 2699999999999887654 77766
Q ss_pred -----------ecCCCCceeEEEecCCcccCCC
Q 036939 99 -----------DLDSHPVIDLAIDGADEVDPGL 120 (215)
Q Consensus 99 -----------~l~~~~~iDl~iDGaDeVd~K~ 120 (215)
.++++ ++|++|-||+++|++.
T Consensus 149 ~~~~~G~~~~~~l~~~-~~D~afig~~gi~~~~ 180 (252)
T PRK10681 149 NAIFKPLDFQQTLDNI-CPDIAFYSAAGVHVSK 180 (252)
T ss_pred cceeeCHHHHHHHHhh-CCCEEEEeCceecCCC
Confidence 34455 8999999999999754
No 11
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=99.17 E-value=7.1e-11 Score=104.78 Aligned_cols=86 Identities=17% Similarity=0.305 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHC-CCCee---------
Q 036939 29 QDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL-GIPLS--------- 98 (215)
Q Consensus 29 ~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~-Gi~v~--------- 98 (215)
..+.|+++|++|+++|++|++|.||+|||+.+++++|.++ +++++||+|...+..+... +++++
T Consensus 89 ~~~~K~~IA~~Aa~~I~dgd~Ifld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~~~v~llGG~~~~~ 162 (269)
T PRK09802 89 NTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKH------TDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQ 162 (269)
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEECCchHHHHHHHhcCcC------CCeEEEeCCHHHHHHHHhCCCCEEEEECCEEecC
Confidence 3478999999999999999999999999999999999642 2699999999999887755 77766
Q ss_pred -----------ecCCCCceeEEEecCCcccCCCC
Q 036939 99 -----------DLDSHPVIDLAIDGADEVDPGLA 121 (215)
Q Consensus 99 -----------~l~~~~~iDl~iDGaDeVd~K~p 121 (215)
.++++ ++|+||-||++++.+..
T Consensus 163 ~~~~~G~~a~~~l~~~-~~d~afig~~gi~~~~G 195 (269)
T PRK09802 163 SQSFYGDQAEQSLQNY-HFDMLFLGVDAIDLERG 195 (269)
T ss_pred CCceECHHHHHHHHhc-cCCEEEEcCceecCCCC
Confidence 44555 89999999999997543
No 12
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=99.15 E-value=1e-10 Score=102.81 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHH-CCCCee---------
Q 036939 29 QDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVS-LGIPLS--------- 98 (215)
Q Consensus 29 ~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~-~Gi~v~--------- 98 (215)
..++|+++|++|+++|++|++|.||+|||+.+++++|.+. +++++||+|...+..+.. .++.++
T Consensus 74 ~~~~K~~IA~~Aa~~I~~g~tIflD~GtT~~~la~~L~~~------~~ltVvTNsl~ia~~l~~~~~~~villGG~~~~~ 147 (252)
T PRK10906 74 QTEEKERIARKVASQIPNGATLFIDIGTTPEAVAHALLNH------SNLRIVTNNLNVANTLMAKEDFRIILAGGELRSR 147 (252)
T ss_pred cHHHHHHHHHHHHhhCCCCCEEEEcCcHHHHHHHHHhcCC------CCcEEEECcHHHHHHHhhCCCCEEEEECCEEecC
Confidence 4578999999999999999999999999999999999642 269999999999987765 477766
Q ss_pred -----------ecCCCCceeEEEecCCcccCCC
Q 036939 99 -----------DLDSHPVIDLAIDGADEVDPGL 120 (215)
Q Consensus 99 -----------~l~~~~~iDl~iDGaDeVd~K~ 120 (215)
.++.+ ++|++|-||+++|.+.
T Consensus 148 ~~~~~G~~a~~~l~~~-~~d~afi~~~Gi~~~~ 179 (252)
T PRK10906 148 DGGIIGEATLDFISQF-RLDFGILGISGIDSDG 179 (252)
T ss_pred CCccCCHHHHHHHHhc-cCCEEEEcCCEECCCC
Confidence 34455 8999999999999753
No 13
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=99.15 E-value=8.7e-11 Score=102.64 Aligned_cols=83 Identities=24% Similarity=0.286 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHC-CCCee---------
Q 036939 29 QDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL-GIPLS--------- 98 (215)
Q Consensus 29 ~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~-Gi~v~--------- 98 (215)
..++|+++|++|+++|++|++|.||+|||+.++++.|.++ ++++||+|...+..+... +++++
T Consensus 76 ~~~~K~~IA~~Aa~lI~~gd~Ifld~GtT~~~l~~~L~~~-------~ltVvTNs~~ia~~l~~~~~~~vil~GG~~~~~ 148 (240)
T PRK10411 76 HYAHKADIAREALAWIEEGMVIALDASSTCWYLARQLPDI-------NIQVFTNSHPICQELGKRERIQLISSGGTLERK 148 (240)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHhhCCC-------CeEEEeCCHHHHHHHhcCCCCEEEEECCEEeCC
Confidence 4578999999999999999999999999999999999641 599999999999877654 77765
Q ss_pred -----------ecCCCCceeEEEecCCcccCC
Q 036939 99 -----------DLDSHPVIDLAIDGADEVDPG 119 (215)
Q Consensus 99 -----------~l~~~~~iDl~iDGaDeVd~K 119 (215)
.++.+ ++|++|-||+++|..
T Consensus 149 ~~~~~G~~a~~~l~~~-~~d~afis~~gi~~~ 179 (240)
T PRK10411 149 YGCYVNPSLISQLKSL-EIDLFIFSCEGIDSS 179 (240)
T ss_pred CCceECHHHHHHHHhc-CCCEEEEeceeECCC
Confidence 34555 899999999999864
No 14
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=99.14 E-value=1.4e-10 Score=101.85 Aligned_cols=81 Identities=10% Similarity=-0.015 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHC-CCCee----------
Q 036939 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL-GIPLS---------- 98 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~-Gi~v~---------- 98 (215)
.++|+++|++|+++|++|++|.||+|||+.+++++|.+ . ++++||+|...+..+.+. +++++
T Consensus 77 ~~~K~~IA~~Aa~~I~~g~~Ifld~GsT~~~la~~L~~------~-~ltVvTnsl~ia~~l~~~~~~~v~l~GG~~~~~~ 149 (251)
T PRK13509 77 HDEKVRIAKAASQLCNPGESVVINCGSTAFLLGRELCG------K-PVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQ 149 (251)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHHhCC------C-CeEEEeCCHHHHHHHHhCCCCEEEEECCeEcCCc
Confidence 46899999999999999999999999999999999854 1 599999999999877654 66655
Q ss_pred ---------ecCCCCceeEEEecCCcccC
Q 036939 99 ---------DLDSHPVIDLAIDGADEVDP 118 (215)
Q Consensus 99 ---------~l~~~~~iDl~iDGaDeVd~ 118 (215)
.++.+ ++|++|-||+++|.
T Consensus 150 ~~~~G~~~~~l~~~-~~d~aFig~~gi~~ 177 (251)
T PRK13509 150 SITLSPQGSENSLY-AGHWMFTSGKGLTA 177 (251)
T ss_pred ceeECHHHHHHHhC-cCCEEEECCCcCCC
Confidence 33444 79999999999995
No 15
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=99.13 E-value=1.6e-10 Score=101.65 Aligned_cols=84 Identities=18% Similarity=0.220 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHH-CC-CCee---------
Q 036939 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVS-LG-IPLS--------- 98 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~-~G-i~v~--------- 98 (215)
.++|+++|++|+++|++|++|.||+|||+.+++++|.+. .++++||+|...+..+.+ .+ ++++
T Consensus 75 ~~~K~~IA~~Aa~~I~~g~tIfld~GtT~~~la~~L~~~------~~ltVvTnsl~ia~~l~~~~~~~~v~l~GG~~~~~ 148 (256)
T PRK10434 75 THKKELIAEAAVSLIHDGDSIILDAGSTVLQMVPLLSRF------NNITVMTNSLHIVNALSELDNEQTILMPGGTFRKK 148 (256)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCcHHHHHHHHHhccC------CCeEEEECCHHHHHHHhhCCCCCEEEEECCEEeCC
Confidence 467999999999999999999999999999999999652 269999999999987765 33 5655
Q ss_pred -----------ecCCCCceeEEEecCCcccCCC
Q 036939 99 -----------DLDSHPVIDLAIDGADEVDPGL 120 (215)
Q Consensus 99 -----------~l~~~~~iDl~iDGaDeVd~K~ 120 (215)
.++.+ ++|++|-||++++.+.
T Consensus 149 ~~~~~G~~a~~~l~~~-~~D~afi~~~gi~~~~ 180 (256)
T PRK10434 149 SASFHGQLAENAFEHF-TFDKLFIGTDGIDLNA 180 (256)
T ss_pred CCeEECHHHHHHHHhC-cCCEEEEcCceecCCC
Confidence 45566 8999999999999764
No 16
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=99.00 E-value=1.5e-09 Score=95.55 Aligned_cols=83 Identities=20% Similarity=0.211 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHC-CCCee---------
Q 036939 29 QDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL-GIPLS--------- 98 (215)
Q Consensus 29 ~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~-Gi~v~--------- 98 (215)
..++|+++|++|+++|+||++|.|++|||+.+++++|.+. +++++||+|..++..+... ++.++
T Consensus 74 ~~~eK~~IA~~Aa~lI~~g~~ifld~GTT~~~la~~L~~~------~~ltviTNsl~ia~~l~~~~~~~vi~~GG~~~~~ 147 (253)
T COG1349 74 NTEEKRAIAKAAATLIEDGDTIFLDAGTTTLALARALPDD------NNLTVITNSLNIAAALLEKPNIEVILLGGTVRKK 147 (253)
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEECCCcHHHHHHHHhCcC------CCeEEEeCCHHHHHHHHhCCCCeEEEeCcEEEcC
Confidence 4578999999999999999999999999999999999752 2499999999988666555 66664
Q ss_pred -----------ecCCCCceeEEEecCCcccC
Q 036939 99 -----------DLDSHPVIDLAIDGADEVDP 118 (215)
Q Consensus 99 -----------~l~~~~~iDl~iDGaDeVd~ 118 (215)
.++++ ++|++|-||+++|.
T Consensus 148 ~~~~~G~~a~~~l~~~-~~d~aFig~~gi~~ 177 (253)
T COG1349 148 SGSFVGPLAEEFLRQF-NFDKAFIGADGIDL 177 (253)
T ss_pred CCeEEcHHHHHHHHhC-cccEEEEeccccCC
Confidence 45566 89999999999996
No 17
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0042 Score=56.68 Aligned_cols=105 Identities=19% Similarity=0.254 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHhcCcCCCE-EEeCcChhHHHHHHHHHhHHhcCCCCCEEE-ecC------cHHHHHHHHHCCCCeeec
Q 036939 29 QDELKKIAANKSVEFVKSGMV-VGLGTDSTATHAVDKIGELLHQGKLKNIVG-IPT------SKTTHDQAVSLGIPLSDL 100 (215)
Q Consensus 29 ~~~~K~~aA~~A~~~V~~g~v-IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~-V~t------S~~t~~~~~~~Gi~v~~l 100 (215)
.+..|+.+|..++++++||.+ +=.|-++|+..+++.-+++.+ ++++ |+= ...++..++++||++..+
T Consensus 102 ~~~a~~~ia~~~a~~i~dg~~IlTh~~S~~v~~~l~~A~~~~k-----~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I 176 (301)
T COG1184 102 VEKAKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGK-----RFKVIVTESRPRGEGRIMAKELRQSGIPVTVI 176 (301)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEecCcHHHHHHHHHhhhcCC-----ceEEEEEcCCCcchHHHHHHHHHHcCCceEEE
Confidence 566789999999999999985 567899999999998776432 2444 332 357889999999997654
Q ss_pred CC------CCceeEEEecCCcccC------C------------CCeeEEEccccHHHHHHHH
Q 036939 101 DS------HPVIDLAIDGADEVDP------G------------LAVPVEVVPVCWKFTANRF 138 (215)
Q Consensus 101 ~~------~~~iDl~iDGaDeVd~------K------------~plPVEV~P~a~~~v~~~l 138 (215)
-+ .+++|..|-|+|.|.. | +..|+=|.-.+++.+-+.+
T Consensus 177 ~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~aesyKf~p~~~ 238 (301)
T COG1184 177 VDSAVGAFMSRVDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVVAESYKFVPKTL 238 (301)
T ss_pred echHHHHHHHhCCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEEeeeeccccccc
Confidence 32 2479999999999975 1 3678877777777765544
No 18
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway. GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium, the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate. 6PGL converts 6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the second step of the oxidative phase of the pentose phosphate pathway.
Probab=96.76 E-value=0.0043 Score=51.32 Aligned_cols=70 Identities=44% Similarity=0.617 Sum_probs=50.3
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcH-------------HHHHHHHHC-CCCee---e--------
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSK-------------TTHDQAVSL-GIPLS---D-------- 99 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~-------------~t~~~~~~~-Gi~v~---~-------- 99 (215)
+...+|||++|||...+.+.|.++..++..+++.++.++. .+.+.+-++ +++-- .
T Consensus 19 ~~~~~i~lsgGsTp~~~y~~L~~~~~~~~w~~v~~f~~DEr~v~~~~~~Sn~~~~~~~ll~~~~i~~~~v~~~~~~~~~~ 98 (169)
T cd00458 19 KDDMVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTDERYVPLDSDQSNFRQAKLLAFEHDIIPASNVHYVDTSLPIE 98 (169)
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhhhCCccceEEEECccccCCCCCchHHHHHHHHHhhccCCCCHHHeecCCCCCCcH
Confidence 3457999999999999999998765544456789999888 555544333 44411 1
Q ss_pred ----------cCCCCceeEEEecCC
Q 036939 100 ----------LDSHPVIDLAIDGAD 114 (215)
Q Consensus 100 ----------l~~~~~iDl~iDGaD 114 (215)
+...+.+|++++|.+
T Consensus 99 ~~a~~y~~~~~~~~~~~Dl~lLG~G 123 (169)
T cd00458 99 KACEKYEREILDQVDAIDLAVDGAG 123 (169)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECcC
Confidence 344467899999998
No 19
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=96.67 E-value=0.0026 Score=56.14 Aligned_cols=153 Identities=17% Similarity=0.224 Sum_probs=83.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc----CcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecC-----------cHH-
Q 036939 22 PTSVGLTQDELKKIAANKSVEF----VKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPT-----------SKT- 85 (215)
Q Consensus 22 ~~~~m~~~~~~K~~aA~~A~~~----V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~t-----------S~~- 85 (215)
+|+...+ ++.++.++++|++| +++|++||+|.|+|+..++++|.. ...+++++||. +..
T Consensus 25 v~~~~~~-~~~~~~l~~~aA~~L~~~l~~~~~iGv~wG~Tl~~~~~~l~~----~~~~~~~vV~l~Gg~~~~~~~~~~~i 99 (255)
T PF04198_consen 25 VPSPSDD-EDILESLGEAAAEYLSELLKDGDVIGVGWGRTLYAVANHLPP----KSLPNVTVVPLIGGVGNSNSYQANEI 99 (255)
T ss_dssp ESSSTTT-HHHHHHHHHHHHHHHHHH--TTEEEEE-TSHHHHHHHHTS------SSSSCEEEEESBSBTTTSSGGSHHHH
T ss_pred ecCCCCh-HHHHHHHHHHHHHHHHHhCCCCCEEEEcchHHHHHHHHhcCc----cCCCCcEEEECCCCCCCCCCcCHHHH
Confidence 4555555 67788888888875 589999999999999999999875 23558889873 222
Q ss_pred HHHHHHHCCCCee-------------------------ecCCCCceeEEEecCCcccCCCCeeEEEccccHHHHHHHHhc
Q 036939 86 THDQAVSLGIPLS-------------------------DLDSHPVIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPD 140 (215)
Q Consensus 86 t~~~~~~~Gi~v~-------------------------~l~~~~~iDl~iDGaDeVd~K~plPVEV~P~a~~~v~~~l~~ 140 (215)
+..+++++|-+.. -++...+.|++|-|.-.+++.- ++.-.-+--+.-+++|++
T Consensus 100 ~~~lA~~~g~~~~~l~aP~~~~s~~~~~~l~~~~~i~~~l~~~~~~dial~giG~~~~~~--~~~~~~~~~~~~~~~l~~ 177 (255)
T PF04198_consen 100 ARRLAEKLGGKYYFLPAPAFVDSPELRDALLAEPSIREVLDLARKADIALVGIGSPSSDS--TLYRSGYLSEEEIEELRE 177 (255)
T ss_dssp HHHHHHHHTSEEE---SBSB-SSHHHHHHHHTSHHHHHHHHHHCT-SEEEEEEEEHHHHH--HHCHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhCCcEEEEeCCccCCCHHHHHHHHhChHHHHHHHHHHhCCEEEEecCCCCCcc--hHHHhCCCCHHHHHHHHH
Confidence 3466677774433 1222346677777766554300 000000001223344444
Q ss_pred chhcCCCceeecceeEecCCCEEEeecCCCCC--CCHHHHHHHHccccCeEEe
Q 036939 141 LFKDCGCVAKLRTCYEKHNGNCIIDLYFKKDI--GDMEVASNRILRLIAGVVE 191 (215)
Q Consensus 141 l~~~~G~~~~lR~p~vTDnGN~IlD~~f~~~i--~dp~~l~~~L~~i~pGVVe 191 (215)
. |....+=.-|++.+||.+ |..+.+.. -+++ .|+++ |=||.
T Consensus 178 ~----gAVGdi~~~f~d~~G~~v-~~~~~~r~igi~l~----~L~~i-~~~I~ 220 (255)
T PF04198_consen 178 K----GAVGDICGRFFDADGNIV-DTPLNDRTIGISLE----DLRKI-PRVIA 220 (255)
T ss_dssp T----TEEEEETTEEEETTS-EE-EHGGGGGBSB--HH----HHHTS-SEEEE
T ss_pred C----CcEEEhhchhhcCCCCCc-cCcCcCceeecCHH----HHhCC-CcEEE
Confidence 3 543333224999999965 55554312 2343 56666 65543
No 20
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=96.07 E-value=0.0098 Score=54.68 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=83.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHh----cCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc------------
Q 036939 20 LSPTSVGLTQDELKKIAANKSVE----FVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS------------ 83 (215)
Q Consensus 20 ~~~~~~m~~~~~~K~~aA~~A~~----~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS------------ 83 (215)
.-+|+.-++.+..++.++++|+. .+++|++||+|.|+|+..+++.+...- .+++++||-.
T Consensus 84 ~VVp~~~~~~~~~~~~lg~aaA~~l~~~l~~gdvigV~wGrTv~a~~~~l~~~~----~~~~~vV~l~GG~~~~~~~~~~ 159 (321)
T COG2390 84 IVVPSDSDADDSILRRLGRAAAQYLESLLKPGDVIGVGWGRTLSAVVDNLPPAP----LRDVKVVQLTGGVGHADGSYNA 159 (321)
T ss_pred EEEcCCCCCchHHHHHHHHHHHHHHHHhCCCCCEEEEeccHHHHHHHHhcCcCc----cCCeEEEECCCCCCCCccccCH
Confidence 33565545555666667777776 569999999999999999999996431 3467776521
Q ss_pred -HHHHHHHHHCCCC-------ee------------------ecCCCCceeEEEecCCcccCCCCeeEEEccccHHHHHHH
Q 036939 84 -KTTHDQAVSLGIP-------LS------------------DLDSHPVIDLAIDGADEVDPGLAVPVEVVPVCWKFTANR 137 (215)
Q Consensus 84 -~~t~~~~~~~Gi~-------v~------------------~l~~~~~iDl~iDGaDeVd~K~plPVEV~P~a~~~v~~~ 137 (215)
.-+..++++.|-+ +. -++...+.|++|-|.-.+.++-++.. .-+.....++.
T Consensus 160 ~~~~~~~A~k~~~~~~~l~aP~~~~s~e~r~~l~~e~~v~~vl~~~~~ad~alvGIG~~~~~~~~~~--~g~~~~~~~~~ 237 (321)
T COG2390 160 NTIALRLAEKLGAESYLLPAPLVASSPELREALLQEPSVREVLDLARSADLALVGIGSLSANSTLVR--SGFIYEEELEA 237 (321)
T ss_pred HHHHHHHHHHhCCcEEeeecCccCCCHHHHHHHHhCcHHHHHHHHHHhCCEEEEecCCCcccchhhh--hcCCCHHHHHH
Confidence 1233566666633 11 12233478999999988876433221 12222234555
Q ss_pred HhcchhcCCCceeecceeEecCCCEEEeecCC
Q 036939 138 FPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFK 169 (215)
Q Consensus 138 l~~l~~~~G~~~~lR~p~vTDnGN~IlD~~f~ 169 (215)
|.+. |...++=--|+..+|+.+ |+..+
T Consensus 238 l~~~----gaVGdi~g~ffD~~G~~~-~~~ln 264 (321)
T COG2390 238 LLAK----GAVGDILGRFFDANGQPV-DTPLN 264 (321)
T ss_pred HHhC----CcceecccceecCCCCCc-ccccc
Confidence 5553 543333112888888744 55444
No 21
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=95.31 E-value=0.14 Score=46.51 Aligned_cols=101 Identities=21% Similarity=0.291 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhcCcCCC-EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc-----HHHHHHHHHCCCCeeecCC-
Q 036939 30 DELKKIAANKSVEFVKSGM-VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS-----KTTHDQAVSLGIPLSDLDS- 102 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~-vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS-----~~t~~~~~~~Gi~v~~l~~- 102 (215)
+..++++++.|.+++++|+ ++=.|-.+|+..+++...++ |+.-.+.++-|. ..++..+.+.||++.-+.+
T Consensus 99 ~~a~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~a~~~---~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Ds 175 (301)
T TIGR00511 99 DKAQERIGEIGAKRIRDGDVVMTHCNSEAALSVIKTAFEQ---GKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDS 175 (301)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHc---CCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehh
Confidence 4567788899999999998 45567778998888777643 221124333332 4688889999999764322
Q ss_pred -----CCceeEEEecCCcccC------------------CCCeeEEEccccHHH
Q 036939 103 -----HPVIDLAIDGADEVDP------------------GLAVPVEVVPVCWKF 133 (215)
Q Consensus 103 -----~~~iDl~iDGaDeVd~------------------K~plPVEV~P~a~~~ 133 (215)
..++|..|-|||.|-. .+.+|+=|.-..++.
T Consensus 176 a~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~~K~ 229 (301)
T TIGR00511 176 AVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAETYKF 229 (301)
T ss_pred HHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEccccee
Confidence 2479999999999965 246777776544443
No 22
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=95.10 E-value=0.17 Score=45.61 Aligned_cols=101 Identities=22% Similarity=0.278 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcCcCCC-EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecC-----cHHHHHHHHHCCCCeeecCC-
Q 036939 30 DELKKIAANKSVEFVKSGM-VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPT-----SKTTHDQAVSLGIPLSDLDS- 102 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~-vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~t-----S~~t~~~~~~~Gi~v~~l~~- 102 (215)
.+.++++++.|+++|++|. ++=.+-.+|+..+++...+. |+.-.+.+.-| ..+.+..+.+.||++.-+.+
T Consensus 93 ~~~~~~I~~~a~~~I~~g~~ILTh~~S~tv~~~l~~A~~~---gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Ds 169 (275)
T PRK08335 93 EEAKREIGNIGSELIDDGDVIITHSFSSAVLEILKTAKRK---GKRFKVILTESAPDYEGLALANELEFLGIEFEVITDA 169 (275)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEECCcHHHHHHHHHHHHc---CCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEecc
Confidence 3567889999999999998 55667677998888876542 32212333322 23456777788999764322
Q ss_pred -----CCceeEEEecCCcccC------------------CCCeeEEEccccHHH
Q 036939 103 -----HPVIDLAIDGADEVDP------------------GLAVPVEVVPVCWKF 133 (215)
Q Consensus 103 -----~~~iDl~iDGaDeVd~------------------K~plPVEV~P~a~~~ 133 (215)
..++|..|-|||.|-. .+.+|+=|.-..++.
T Consensus 170 a~~~~m~~vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~~k~ 223 (275)
T PRK08335 170 QLGLFAKEATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAETFKF 223 (275)
T ss_pred HHHHHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECcccee
Confidence 2479999999999965 147888777544443
No 23
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=95.05 E-value=0.18 Score=45.89 Aligned_cols=100 Identities=22% Similarity=0.231 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCcCCCEEEeCc-C--------hhHHHHHHHHHhHHhcCCCCCEEEecC------cHHHHHHHHHCCCC
Q 036939 32 LKKIAANKSVEFVKSGMVVGLGT-D--------STATHAVDKIGELLHQGKLKNIVGIPT------SKTTHDQAVSLGIP 96 (215)
Q Consensus 32 ~K~~aA~~A~~~V~~g~vIGLGs-G--------STv~~~i~~L~~~~~~~~l~~i~~V~t------S~~t~~~~~~~Gi~ 96 (215)
..+++++.|+++|++|++|--=+ . +|+..+++...++ |..-.+.++-| +..++..+.+.||+
T Consensus 104 ~~~~Ia~~a~~~I~~g~~ILT~~~Sg~lat~~~~tv~~~l~~A~~~---g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~ 180 (303)
T TIGR00524 104 TNRKIGENGAKLIKDGDTVLTHCNAGALATSDYGTALGVIRSAWED---GKRIRVIACETRPRNQGSRLTAWELMQDGID 180 (303)
T ss_pred HHHHHHHHHHHHccCCCEEEEecCCccccccCcchHHHHHHHHHHc---CCceEEEECCCCCccchHHHHHHHHHHCCCC
Confidence 45678899999999999654433 2 5888888776543 22112333311 25678888999999
Q ss_pred eeecCC------CC--ceeEEEecCCcccC------------------CCCeeEEEccccHHHH
Q 036939 97 LSDLDS------HP--VIDLAIDGADEVDP------------------GLAVPVEVVPVCWKFT 134 (215)
Q Consensus 97 v~~l~~------~~--~iDl~iDGaDeVd~------------------K~plPVEV~P~a~~~v 134 (215)
+.-+.+ .+ ++|..|-|||.|-. .+.+|+=|.-..++..
T Consensus 181 vtlI~Dsa~~~~m~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~s~K~~ 244 (303)
T TIGR00524 181 VTLITDSMAAYFMQKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAPLSTFD 244 (303)
T ss_pred EEEEChhHHHHHccccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEeccccccc
Confidence 764321 23 79999999999965 1478888776555543
No 24
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=94.96 E-value=0.026 Score=51.50 Aligned_cols=149 Identities=11% Similarity=0.131 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHh----cCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc--H----HH-HHHHHHCC----
Q 036939 30 DELKKIAANKSVE----FVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS--K----TT-HDQAVSLG---- 94 (215)
Q Consensus 30 ~~~K~~aA~~A~~----~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS--~----~t-~~~~~~~G---- 94 (215)
++..+.+|++|++ ++++|++||+|.|+|+..+++.+... ...+++++||.. . +. +.++...+
T Consensus 95 ~~~~~~vg~~aA~~L~~~l~~~~~IGvswG~Tl~~~~~~l~~~---~~~~~~~vV~l~Gg~~~~~~~~~~~~~~~~~~~l 171 (318)
T PRK15418 95 ADIGGRLGIGAAHMLMSLLQPQQLLAVGFGEATMNTLQHLSGF---ISSQQIRLVTLSGGVGPYMTGIGQLDAACSVSII 171 (318)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCEEEEcchHHHHHHHHhcccc---CCCCCCEEEEcCCCCCcchhhHHHHhccCCeEEe
Confidence 3445667777766 55899999999999999999988531 123478888762 1 11 12222222
Q ss_pred -CCee------------------ecCCCCceeEEEecCCcccCCCCeeEEEccccHHHHHHHHhcchhcCCCceeeccee
Q 036939 95 -IPLS------------------DLDSHPVIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCY 155 (215)
Q Consensus 95 -i~v~------------------~l~~~~~iDl~iDGaDeVd~K~plPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR~p~ 155 (215)
.|++ -++...+.|++|-|.-.++..-+-++.=.-+--+..++.|++. |....+=.-|
T Consensus 172 ~aP~~v~s~e~~~~l~~e~~i~~vl~~~~~~Dial~GIG~~~~~~~s~~~~~g~l~~~~~~~L~~~----gAVGdi~g~f 247 (318)
T PRK15418 172 PAPLRASSAEIARTLRNENSVRDVMLAAQAADVAIVGIGAVNQKDDATILRSGYISQGEQLMIGRK----GAVGDILGYF 247 (318)
T ss_pred ccCeecCCHHHHHHHHhChHHHHHHHHHHhCCEEEEEecCCCCCCCCceeecCCCCHHHHHHHHHC----CceEEEeeeE
Confidence 2221 1223357888888888876411111111111113344556553 5533331138
Q ss_pred EecCCCEEEeecCCCCC--CCHHHHHHHHccccCeEE
Q 036939 156 EKHNGNCIIDLYFKKDI--GDMEVASNRILRLIAGVV 190 (215)
Q Consensus 156 vTDnGN~IlD~~f~~~i--~dp~~l~~~L~~i~pGVV 190 (215)
++-+||.+-|..+.+-. .+++ .|+++ |=++
T Consensus 248 ~D~~G~~v~~~~~~~r~igi~le----~Lk~i-p~~I 279 (318)
T PRK15418 248 FDADGELVPDIKIHNELIGLPLS----SLKTI-PTVI 279 (318)
T ss_pred ECCCCCCcCCcccccceecCCHH----HHcCC-CCEE
Confidence 89999988665544311 1343 66666 6443
No 25
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=94.66 E-value=0.21 Score=45.47 Aligned_cols=100 Identities=21% Similarity=0.289 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCcCCCE-EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc-----HHHHHHHHHCCCCeeecCC--
Q 036939 31 ELKKIAANKSVEFVKSGMV-VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS-----KTTHDQAVSLGIPLSDLDS-- 102 (215)
Q Consensus 31 ~~K~~aA~~A~~~V~~g~v-IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS-----~~t~~~~~~~Gi~v~~l~~-- 102 (215)
...+++++.|.+++++|++ +=.|..+|+..+++...++ |+.-.+.+.-|. ..++..+.+.||++.-+.+
T Consensus 105 ~~~~~I~~~a~~~i~~g~~ILT~~~S~tv~~~l~~A~~~---~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsa 181 (310)
T PRK08535 105 NAVEKIGEIGAKRIRDGDVIMTHCNSSAALSVIKTAHEQ---GKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSA 181 (310)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEeCCcHHHHHHHHHHHHC---CCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhH
Confidence 4567788999999999984 5567678999888776543 221123332222 3578888999999763322
Q ss_pred ----CCceeEEEecCCcccC------------------CCCeeEEEccccHHH
Q 036939 103 ----HPVIDLAIDGADEVDP------------------GLAVPVEVVPVCWKF 133 (215)
Q Consensus 103 ----~~~iDl~iDGaDeVd~------------------K~plPVEV~P~a~~~ 133 (215)
..++|..|-|||.|-. .+.+|+=|.-..++.
T Consensus 182 v~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~~K~ 234 (310)
T PRK08535 182 VRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAETYKF 234 (310)
T ss_pred HHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEeccccee
Confidence 2579999999999954 247777776544443
No 26
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=94.57 E-value=0.13 Score=45.36 Aligned_cols=101 Identities=24% Similarity=0.369 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhcCcCCCE-EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcH------HHHHHHHHCCCCeeecC
Q 036939 29 QDELKKIAANKSVEFVKSGMV-VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSK------TTHDQAVSLGIPLSDLD 101 (215)
Q Consensus 29 ~~~~K~~aA~~A~~~V~~g~v-IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~------~t~~~~~~~Gi~v~~l~ 101 (215)
.+...+.++..|.++|++|++ +=.|-.+|+..++....+. |..-.+. |+=|. .++..+.+.|+++..+.
T Consensus 90 ~~~~~~~I~~~~~~~I~~~~~ILT~~~S~~v~~~l~~a~~~---~~~~~V~-v~es~P~~eG~~~a~~L~~~gi~v~~i~ 165 (282)
T PF01008_consen 90 IEQAREKIADHASELINDGDTILTHGYSSTVERFLLSAKKK---GKKFRVI-VLESRPYNEGRLMAKELAEAGIPVTLIP 165 (282)
T ss_dssp HHHHHHHHHHHHHCCC-TTEEEEEES--SHHHHHHHHHHHT---TEEEEEE-EE--TTTTHHHTHHHHHHHTT-EEEEE-
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCchHHHHHHHHHHHc---CCeEEEE-EccCCcchhhhhHHHHhhhcceeEEEEe
Confidence 345677889999999999985 5689999999888875432 2111232 33332 57778888899976443
Q ss_pred CC------Cc-eeEEEecCCcccC------------------CCCeeEEEccccHHH
Q 036939 102 SH------PV-IDLAIDGADEVDP------------------GLAVPVEVVPVCWKF 133 (215)
Q Consensus 102 ~~------~~-iDl~iDGaDeVd~------------------K~plPVEV~P~a~~~ 133 (215)
+. ++ +|..+-|||.|-. .+.+|+=|+-..++.
T Consensus 166 d~~~~~~m~~~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~~K~ 222 (282)
T PF01008_consen 166 DSAVGYVMPRDVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAESYKF 222 (282)
T ss_dssp GGGHHHHHHCTESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--GGGB
T ss_pred chHHHHHHHHhCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEcccccc
Confidence 22 36 9999999999965 268999888666554
No 27
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=94.36 E-value=0.28 Score=45.36 Aligned_cols=83 Identities=24% Similarity=0.276 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhcCcCCC----EEEe--CcC-------hhHHHHHHHHHhHHhcCCCCCEEEecC-c-------HHHHHH
Q 036939 31 ELKKIAANKSVEFVKSGM----VVGL--GTD-------STATHAVDKIGELLHQGKLKNIVGIPT-S-------KTTHDQ 89 (215)
Q Consensus 31 ~~K~~aA~~A~~~V~~g~----vIGL--GsG-------STv~~~i~~L~~~~~~~~l~~i~~V~t-S-------~~t~~~ 89 (215)
+..+++++.|.++|++|. +|=- -|| +|+..+++...++ |. .++++.+ | ..|+..
T Consensus 127 ~~~~~I~~~g~~~I~dg~~~~~~ILThcnsg~lat~~~gtal~~l~~A~~~---g~--~~~V~v~EsrP~~qG~rlta~~ 201 (331)
T TIGR00512 127 EDNRAIGENGAALIKKGVAAPLRVLTHCNTGSLATAGYGTALGVIRSAHEK---GR--LEHVYADETRPRLQGARLTAWE 201 (331)
T ss_pred HHHHHHHHHHHHHhcCCCCCCceEEeecCCccccccccchHHHHHHHHHHc---CC--ceEEEECCCCchhhHHHHHHHH
Confidence 346678999999999999 5544 133 2787787776543 32 2333322 1 135677
Q ss_pred HHHCCCCeeecCC--------CCceeEEEecCCcccC
Q 036939 90 AVSLGIPLSDLDS--------HPVIDLAIDGADEVDP 118 (215)
Q Consensus 90 ~~~~Gi~v~~l~~--------~~~iDl~iDGaDeVd~ 118 (215)
+.+.||++.-+.+ ..++|..|-|||.|-.
T Consensus 202 L~~~GI~vtlI~Dsav~~~m~~~~vd~VivGAd~v~~ 238 (331)
T TIGR00512 202 LVQEGIPATLITDSMAAHLMKHGEVDAVIVGADRIAA 238 (331)
T ss_pred HHHCCCCEEEEcccHHHHHhcccCCCEEEEcccEEec
Confidence 8899999774332 2279999999999965
No 28
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=92.41 E-value=0.75 Score=42.73 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCcCCCEEEe-C-cCh-------hHHHHHHHHHhHHhcCCCCCEEEecC-------cHH-HHHHHHHCC
Q 036939 32 LKKIAANKSVEFVKSGMVVGL-G-TDS-------TATHAVDKIGELLHQGKLKNIVGIPT-------SKT-THDQAVSLG 94 (215)
Q Consensus 32 ~K~~aA~~A~~~V~~g~vIGL-G-sGS-------Tv~~~i~~L~~~~~~~~l~~i~~V~t-------S~~-t~~~~~~~G 94 (215)
..+++++.|.++|++|++|=- + ||+ |+..+++...++ |+ +++++.+ +.+ |+..+.+.|
T Consensus 133 ~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~l~~A~~~---gk--~~~V~v~EtRP~~qG~rlta~eL~~~G 207 (339)
T PRK06036 133 RNKLIGKHGAKLLEDGDTVLTHCNAGRLACVDWGTALGVIRSAVEQ---GK--EIKVIACETRPLNQGSRLTTWELMQDN 207 (339)
T ss_pred HHHHHHHHHHHHccCCCEEEEecCCccccccccchHHHHHHHHHHc---CC--ceEEEEcCCCchhhHHHHHHHHHHHcC
Confidence 456677889999999996554 2 453 667777776542 32 3444433 122 667888999
Q ss_pred CCeeecCC------C--CceeEEEecCCcccC
Q 036939 95 IPLSDLDS------H--PVIDLAIDGADEVDP 118 (215)
Q Consensus 95 i~v~~l~~------~--~~iDl~iDGaDeVd~ 118 (215)
|++.-+.+ . ..+|..|-|||.|-.
T Consensus 208 I~vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~a 239 (339)
T PRK06036 208 IPVTLITDSMAGIVMRQGMVDKVIVGADRITR 239 (339)
T ss_pred CCEEEEehhHHHHHhccCCCCEEEECccchhh
Confidence 99663321 1 249999999999965
No 29
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=92.25 E-value=0.84 Score=40.80 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecC-----cHHHHHHHHHCCCCeeecCC----
Q 036939 32 LKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPT-----SKTTHDQAVSLGIPLSDLDS---- 102 (215)
Q Consensus 32 ~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~t-----S~~t~~~~~~~Gi~v~~l~~---- 102 (215)
.-+.+++.|.+++.+.-++=+|+++|+..|+..- + ....+.++-| ...++..+.++|+++.-+.+
T Consensus 73 ~~~~~~~~A~~~i~~dvILT~s~S~~v~~~l~~~-~-----~~~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~~ 146 (253)
T PRK06372 73 HEKMAIEHAKPLFNDSVIGTISSSQVLKAFISSS-E-----KIKSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASMC 146 (253)
T ss_pred HHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHhc-C-----CCCEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHHH
Confidence 3456777888899666678889999998887541 1 1112433332 25677888889999763321
Q ss_pred --CCceeEEEecCCcccC------------------CCCeeEEEccccHH
Q 036939 103 --HPVIDLAIDGADEVDP------------------GLAVPVEVVPVCWK 132 (215)
Q Consensus 103 --~~~iDl~iDGaDeVd~------------------K~plPVEV~P~a~~ 132 (215)
.+++|..|-|||.|-. .+.+|+=|.-..++
T Consensus 147 ~~m~~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s~K 196 (253)
T PRK06372 147 EAVLNVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTISMK 196 (253)
T ss_pred HHHHhCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeeccc
Confidence 2479999999999954 24777777654444
No 30
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=91.89 E-value=1.1 Score=41.73 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=53.3
Q ss_pred HHHHHHHHHHhcCcCCCEEEe-C-cCh-------hHHHHHHHHHhHHhcCCCCCEEEecCc--------HHHHHHHHHCC
Q 036939 32 LKKIAANKSVEFVKSGMVVGL-G-TDS-------TATHAVDKIGELLHQGKLKNIVGIPTS--------KTTHDQAVSLG 94 (215)
Q Consensus 32 ~K~~aA~~A~~~V~~g~vIGL-G-sGS-------Tv~~~i~~L~~~~~~~~l~~i~~V~tS--------~~t~~~~~~~G 94 (215)
..+++++.|+++|++|++|=- + ||+ |+..+++...+ +|+ .++++.+- ..|+..+.+.|
T Consensus 132 ~~~~I~~~g~~~I~~g~~ILThc~sg~lat~~~gTal~~i~~A~~---~gk--~~~V~v~EsRP~~qG~~lta~eL~~~G 206 (344)
T PRK05720 132 INRAIGEHGLTLIRKGQGILTHCNAGWLATAGYGTALAPIYAAKE---KGI--DIHVYADETRPRLQGARLTAWELYQAG 206 (344)
T ss_pred HHHHHHHHHHHHccCCCEEEEecCCCcceecchhHHHHHHHHHHH---cCC--ceEEEEcCCCChhhhHHHHHHHHHHCC
Confidence 345778889999999986543 3 443 56667776543 232 23333221 24677888999
Q ss_pred CCeeecCC--------CCceeEEEecCCcccC
Q 036939 95 IPLSDLDS--------HPVIDLAIDGADEVDP 118 (215)
Q Consensus 95 i~v~~l~~--------~~~iDl~iDGaDeVd~ 118 (215)
|++.-+.+ ...+|..|-|||.|-.
T Consensus 207 I~vtlI~Dsa~~~~M~~~~vd~VivGAd~I~~ 238 (344)
T PRK05720 207 IDVTVITDNMAAHLMQTGKIDAVIVGADRIAA 238 (344)
T ss_pred CCEEEEcccHHHHHhcccCCCEEEEcccEEec
Confidence 99774332 1259999999999965
No 31
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism]
Probab=91.54 E-value=0.95 Score=39.89 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHH
Q 036939 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIG 66 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~ 66 (215)
...|..+|++|++.++||++|-||.| --...++++.
T Consensus 5 ~~~~e~ia~r~A~el~dG~~VnlGIG-lPtlvan~~~ 40 (225)
T COG2057 5 KTEREMIAKRAARELKDGDYVNLGIG-LPTLVANYAP 40 (225)
T ss_pred chhHHHHHHHHHHhccCCCEEEecCC-chHHhHhhcc
Confidence 35789999999999999999999999 4445555554
No 32
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=91.25 E-value=1 Score=42.23 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCcCCCEE-EeC-cCh--------hHHHHHHHHHhHHhcCCCCCEEEecCc--------HHHHHHHHH
Q 036939 31 ELKKIAANKSVEFVKSGMVV-GLG-TDS--------TATHAVDKIGELLHQGKLKNIVGIPTS--------KTTHDQAVS 92 (215)
Q Consensus 31 ~~K~~aA~~A~~~V~~g~vI-GLG-sGS--------Tv~~~i~~L~~~~~~~~l~~i~~V~tS--------~~t~~~~~~ 92 (215)
+..+++++.++++|++|++| =-+ ||+ |+...++...+ +|. .++++.+- ..|+.++.+
T Consensus 151 ~~~~~I~~~g~~~I~dg~~ILThcnsg~Lat~~g~gtal~~i~~a~~---~gk--~f~V~v~EsRP~~qG~rlta~eL~~ 225 (363)
T PRK05772 151 DAEIQMGLYGLEKLNDGDTVLTQCNAGGLATGTGLGTALAPVKLAKA---LGM--SVSVIAPETRPWLQGSRLTVYELME 225 (363)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEecCCcchhhccccccHHHHHHHHHH---CCC--eEEEEECCCCccchhHHHHHHHHHH
Confidence 34677899999999999854 333 332 45555565543 232 34444322 235677889
Q ss_pred CCCCeeecC--------CCCceeEEEecCCcccC
Q 036939 93 LGIPLSDLD--------SHPVIDLAIDGADEVDP 118 (215)
Q Consensus 93 ~Gi~v~~l~--------~~~~iDl~iDGaDeVd~ 118 (215)
.||++.-+- ....+|..|-|||.|-.
T Consensus 226 ~GIpvtlI~Dsa~~~~m~~~~Vd~VivGAD~I~~ 259 (363)
T PRK05772 226 EGIKVTLITDTAVGLVMYKDMVNNVMVGADRILR 259 (363)
T ss_pred CCCCEEEEehhHHHHHHhhcCCCEEEECccEEec
Confidence 999976332 11359999999999955
No 33
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=91.20 E-value=1.3 Score=41.13 Aligned_cols=80 Identities=25% Similarity=0.235 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCcCCCEEEe-C-cCh-------hHHHHHHHHHhHHhcCCCCCEEEecCc-------HH-HHHHHHHCCCC
Q 036939 34 KIAANKSVEFVKSGMVVGL-G-TDS-------TATHAVDKIGELLHQGKLKNIVGIPTS-------KT-THDQAVSLGIP 96 (215)
Q Consensus 34 ~~aA~~A~~~V~~g~vIGL-G-sGS-------Tv~~~i~~L~~~~~~~~l~~i~~V~tS-------~~-t~~~~~~~Gi~ 96 (215)
+++++.|.++|++|.+|=- + ||+ |+..+++...++ |+ .++++.+- .+ |+.++.+.||+
T Consensus 124 ~~I~~~g~~~I~~g~~ILThcnsg~la~~~~gTal~~l~~A~~~---gk--~f~V~v~EsRP~~qG~rlta~eL~~~GI~ 198 (329)
T PRK06371 124 KKIGEYGNELIKNGARILTHCNAGALAVVDWGTALAPIRIAHRN---GK--NIFVFVDETRPRLQGARLTAWELAQEGID 198 (329)
T ss_pred HHHHHHHHHHcCCCCEEEEeCCCCcceeccchhHHHHHHHHHHc---CC--eeEEEECCCCCcchHHHHHHHHHHHCCCC
Confidence 5678899999999985443 3 454 456677766543 32 24443322 22 57788889999
Q ss_pred eeecCC--------CCceeEEEecCCcccC
Q 036939 97 LSDLDS--------HPVIDLAIDGADEVDP 118 (215)
Q Consensus 97 v~~l~~--------~~~iDl~iDGaDeVd~ 118 (215)
+.-+-+ ...+|..|-|||.|-.
T Consensus 199 vtlI~Dsa~~~~M~~~~Vd~VivGAd~I~a 228 (329)
T PRK06371 199 HAIIADNAAGYFMRKKEIDLVIVGADRIAS 228 (329)
T ss_pred EEEEcccHHHHHhhhcCCCEEEECccEEec
Confidence 773321 1259999999999965
No 34
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=90.11 E-value=0.82 Score=33.61 Aligned_cols=68 Identities=13% Similarity=0.158 Sum_probs=51.6
Q ss_pred eeEEEccccHHHHHHHHhcchhcCCCceeecceeEecCCCEEEeecCCCCCCCHHHHHHHHccccCeEEeeeecccc
Q 036939 122 VPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDM 198 (215)
Q Consensus 122 lPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR~p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i~pGVVe~GLF~~~ 198 (215)
+-|.+.|..+..+.+.|..+ .|++. ...++.|++|+=+--.+ ..+..+.-++|+.+ |||....|-+..
T Consensus 8 ~vV~~~p~~~~~v~~~l~~~---~gvEV----h~~~~~GKiVVtiE~~~-~~~~~~~~~~i~~l-~GVlsa~lvYh~ 75 (79)
T PF03927_consen 8 LVVHARPERLEEVAEALAAI---PGVEV----HAVDEDGKIVVTIEAES-SEEEVDLIDAINAL-PGVLSASLVYHY 75 (79)
T ss_dssp EEEEE-CCCHHHHHHHHCCS---TTEEE----EEEETTTEEEEEEEESS-HHHHHHHHHHHCCS-TTEEEEEESSEE
T ss_pred EEEEECchhHHHHHHHHHcC---CCcEE----EeeCCCCeEEEEEEeCC-hHHHHHHHHHHHcC-CCceEEEEEEEE
Confidence 55788899999999999998 36654 36778899988665443 45566677789999 999999886643
No 35
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional
Probab=89.90 E-value=0.82 Score=39.67 Aligned_cols=55 Identities=25% Similarity=0.335 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHHHHhcCc-------CCCEEEeCcChhHHHHHHHHHhHHhcCC--CCCEEEecC
Q 036939 28 TQDELKKIAANKSVEFVK-------SGMVVGLGTDSTATHAVDKIGELLHQGK--LKNIVGIPT 82 (215)
Q Consensus 28 ~~~~~K~~aA~~A~~~V~-------~g~vIGLGsGSTv~~~i~~L~~~~~~~~--l~~i~~V~t 82 (215)
+.++.=+.+|+.-.+.++ ++++||+.+|+|...+.+.|.+..++.. .++++++..
T Consensus 8 ~~~~l~~~aa~~l~~~l~~~~~~~~~~~~iglsgG~T~~~~~~~L~~~~~~~~~~~~~v~v~~~ 71 (261)
T PRK00443 8 TAEEVGKWAARHIANRINAFLPTKERPFVLGLATGSSPLETYKALIELHKAGKVDFSRVTTFNL 71 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhccCCceEEEecCCCCHHHHHHHHHHHhhhcCCchHHeEEEeC
Confidence 344555556666666666 7899999999999999999985433222 346666655
No 36
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=88.76 E-value=2.6 Score=39.52 Aligned_cols=82 Identities=17% Similarity=0.130 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCcCCCEEEeC-cC-------hhHHHHHHHHHhHHhcCCCCCEEEecC-------cH-HHHHHHHHCCC
Q 036939 32 LKKIAANKSVEFVKSGMVVGLG-TD-------STATHAVDKIGELLHQGKLKNIVGIPT-------SK-TTHDQAVSLGI 95 (215)
Q Consensus 32 ~K~~aA~~A~~~V~~g~vIGLG-sG-------STv~~~i~~L~~~~~~~~l~~i~~V~t-------S~-~t~~~~~~~Gi 95 (215)
..+++++.+++++++|.++=-+ +| .|+..+++...+ +|. .++++.+ .. -|+.++.+.||
T Consensus 146 ~~~~Ig~~g~~li~dg~ILTHcnaG~LAt~~~gTal~vi~~A~~---~gk--~~~V~v~EtRP~~qG~rlta~eL~~~GI 220 (356)
T PRK08334 146 ANLRMGHYGAEVLPEGNVLTHCNAGSLATVHLGTVGAVLRVMHK---DGT--LKLLWVDETRPVLQGARLSAWEYHYDGI 220 (356)
T ss_pred HHHHHHHHHHhhcCCCCEEEecCcchhhhcccchHHHHHHHHHH---cCC--eEEEEECCCCchhhHHHHHHHHHHHCCC
Confidence 4678888999999999865544 22 357777776654 343 3444333 12 23566788899
Q ss_pred CeeecC--------CCCceeEEEecCCcccC
Q 036939 96 PLSDLD--------SHPVIDLAIDGADEVDP 118 (215)
Q Consensus 96 ~v~~l~--------~~~~iDl~iDGaDeVd~ 118 (215)
++.-+. ...++|..|-|||.|-.
T Consensus 221 ~vtlI~Dsav~~~M~~~~Vd~VivGAd~I~~ 251 (356)
T PRK08334 221 PLKLISDNMAGFVMQQGKVDAIIVGADRIVA 251 (356)
T ss_pred CEEEEehhHHHHHhhhcCCCEEEECccEEec
Confidence 966321 11369999999999965
No 37
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=88.37 E-value=1.1 Score=30.95 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=44.7
Q ss_pred EEEcccc--HHHHHHHHhcchhcCCCceeecc-eeEecCCCEEEeecCCCCCCCHHHHHHH-HccccCeEEee
Q 036939 124 VEVVPVC--WKFTANRFPDLFKDCGCVAKLRT-CYEKHNGNCIIDLYFKKDIGDMEVASNR-ILRLIAGVVEH 192 (215)
Q Consensus 124 VEV~P~a--~~~v~~~l~~l~~~~G~~~~lR~-p~vTDnGN~IlD~~f~~~i~dp~~l~~~-L~~i~pGVVe~ 192 (215)
|++.|.. +..+.+.|.++ +.++. -.+|-..++++-+.+.+ ..+.+++-.. |..+ |||..+
T Consensus 3 V~~~~~~~~~~~~~~~l~~~-------p~V~~~~~vtG~~d~~~~v~~~d-~~~l~~~i~~~l~~~-~gV~~~ 66 (74)
T PF01037_consen 3 VKVEPGHDAYDEFAEALAEI-------PEVVECYSVTGEYDLILKVRARD-MEELEEFIREKLRSI-PGVRRT 66 (74)
T ss_dssp EEESTTGTHHHHHHHHHHTS-------TTEEEEEEESSSSSEEEEEEESS-HHHHHHHHHHTHHTS-TTEEEE
T ss_pred EEEcCCCchHHHHHHHHHcC-------CCEEEEEEEeCCCCEEEEEEECC-HHHHHHHHHHHhhcC-CCEEEE
Confidence 6777877 88888888876 34444 57888889999999875 5555555444 9999 999765
No 38
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional
Probab=88.22 E-value=0.68 Score=40.43 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCcCCCEEEeCcCh---hHHHHHHHHHhHHhcCCCCCEEEecCc
Q 036939 33 KKIAANKSVEFVKSGMVVGLGTDS---TATHAVDKIGELLHQGKLKNIVGIPTS 83 (215)
Q Consensus 33 K~~aA~~A~~~V~~g~vIGLGsGS---Tv~~~i~~L~~~~~~~~l~~i~~V~tS 83 (215)
|..-+++|+++|+||++|++|+-. +-..++++|.++ + .+|++++.++
T Consensus 4 K~~s~~eAv~~I~DG~ti~~gGf~~~~~P~ali~al~r~---~-~~dLtli~~~ 53 (219)
T PRK09920 4 KLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLES---G-VRDLTLIAND 53 (219)
T ss_pred ccCcHHHHHhcCCCCCEEEECcccCcCCHHHHHHHHHhc---C-CCceEEEEeC
Confidence 555678899999999999988743 677788888654 3 3589998743
No 39
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=87.10 E-value=0.26 Score=41.85 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=40.5
Q ss_pred CcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecC----CCCceeEEEec
Q 036939 53 GTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLD----SHPVIDLAIDG 112 (215)
Q Consensus 53 GsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~----~~~~iDl~iDG 112 (215)
|||+|+ +++.|+++. ++.+|++..--...|++.|+.+..++ +.+++|.++|.
T Consensus 10 GsG~TT--va~~lAe~~------gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~ 65 (179)
T COG1102 10 GSGKTT--VARELAEHL------GLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDR 65 (179)
T ss_pred CCChhH--HHHHHHHHh------CCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHH
Confidence 777776 457777653 57799999999999999999988653 55678888776
No 40
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit. Various members of this family are characterized as the A subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The B subunit represents a different clade in pfam01144, described by TIGR02428. The two are found in general as tandem genes and occasionally as a fusion.
Probab=86.05 E-value=1.1 Score=39.28 Aligned_cols=43 Identities=14% Similarity=0.256 Sum_probs=32.0
Q ss_pred HHHHHhcCcCCCEEEeCcC---hhHHHHHHHHHhHHhcCCCCCEEEecCc
Q 036939 37 ANKSVEFVKSGMVVGLGTD---STATHAVDKIGELLHQGKLKNIVGIPTS 83 (215)
Q Consensus 37 A~~A~~~V~~g~vIGLGsG---STv~~~i~~L~~~~~~~~l~~i~~V~tS 83 (215)
+++|+++|+||++|++|+- .+-..++++|.+ + +.++++++.++
T Consensus 9 ~~eAv~~I~DG~ti~~gGf~~~~~P~ali~~l~r---~-~~~~Ltlv~~~ 54 (222)
T TIGR02429 9 AAEAVSVIPDGATIMIGGFGTAGQPFELIDALID---T-GAKDLTIVSNN 54 (222)
T ss_pred HHHHHhhCCCCCEEEECCcCCccCcHHHHHHHHh---c-CCCCcEEEecC
Confidence 4667889999999999884 356667777754 3 34689999854
No 41
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=85.84 E-value=2.3 Score=38.71 Aligned_cols=61 Identities=26% Similarity=0.358 Sum_probs=43.8
Q ss_pred CHHHHHHHHHHHHHh--cCcCCCE---EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHH----CCCC
Q 036939 28 TQDELKKIAANKSVE--FVKSGMV---VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVS----LGIP 96 (215)
Q Consensus 28 ~~~~~K~~aA~~A~~--~V~~g~v---IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~----~Gi~ 96 (215)
+.+++-++.-+..++ .+++||. ||-|-|+++.+.+++-+. ++++||-|..-...+++ .|++
T Consensus 52 tL~eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v--------~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 52 TLEEAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGV--------TVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred ChHHHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCC--------EEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 344554444555555 7799997 799999999999887532 58899999887766544 5766
No 42
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=85.83 E-value=1.4 Score=37.32 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCcC--CCEEEeCcChhHHHHHHHHHhH
Q 036939 34 KIAANKSVEFVKS--GMVVGLGTDSTATHAVDKIGEL 68 (215)
Q Consensus 34 ~~aA~~A~~~V~~--g~vIGLGsGSTv~~~i~~L~~~ 68 (215)
+.+|+...+.+++ +.+|||..|+|...+.+.|...
T Consensus 5 ~~~a~~l~~~i~~~~~~~i~lsgG~T~~~~~~~l~~~ 41 (232)
T cd01399 5 EAAAELIAELIREKPPAVLGLATGSTPLGVYEELIEL 41 (232)
T ss_pred HHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHH
Confidence 4556666667777 7899999999999999999764
No 43
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit. Various members of this family are characterized as the B subunits of succinyl-CoA:3-ketoacid-CoA transferase (EC 2.8.3.5), beta-ketoadipate:succinyl-CoA transferase (EC 2.8.3.6), acetyl-CoA:acetoacetate CoA transferase (EC 2.8.3.8), and butyrate-acetoacetate CoA-transferase (EC 2.8.3.9). This represents a very distinct clade with strong sequence conservation within the larger family defined by Pfam model pfam01144. The A subunit represents a different clade in pfam01144.
Probab=85.41 E-value=1.7 Score=37.42 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHH-----------HHHHHHC--------
Q 036939 33 KKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT-----------HDQAVSL-------- 93 (215)
Q Consensus 33 K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t-----------~~~~~~~-------- 93 (215)
++.+|++|+++|+||++|-+|.| .-...+..|.+ + ++++..+-+--. --.+...
T Consensus 3 ~~~Ia~~aA~~i~dg~~v~lGiG-iP~~va~~l~~----~--~~l~l~~E~G~~g~~p~p~~~~~~~~l~~~g~~~~~~~ 75 (207)
T TIGR02428 3 RDQIAARAAQELKDGDYVNLGIG-IPTLVANYLPE----G--IEVFLQSENGILGMGPAPEPGEEDPDLINAGKQPVTLL 75 (207)
T ss_pred HHHHHHHHHHhcCCCCEEEEeec-HHHHHHHHHhc----C--CeEEEEEeCceecCccCCCCCCcCHHHHhCCCCceeec
Confidence 78899999999999999999999 55555555543 1 144443322100 0012222
Q ss_pred -CCCee------ecCCCCceeEEEecCCcccCCCCeeEEEcc
Q 036939 94 -GIPLS------DLDSHPVIDLAIDGADEVDPGLAVPVEVVP 128 (215)
Q Consensus 94 -Gi~v~------~l~~~~~iDl~iDGaDeVd~K~plPVEV~P 128 (215)
|-.+. ++-+...+|++|-|+=|||..=.+-.+-.|
T Consensus 76 ~g~~~~~~~~~f~~~~~G~~dv~~lga~qvD~~GnvN~~~~~ 117 (207)
T TIGR02428 76 PGASYFDSADSFAMIRGGHVDVAVLGALQVSENGDLANWMIP 117 (207)
T ss_pred cCcEEecChhheeeEcCCceeEEEechHHhCCCCcccccccC
Confidence 11111 233446899999999999974334334333
No 44
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=84.58 E-value=5.8 Score=36.17 Aligned_cols=83 Identities=23% Similarity=0.245 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecC-------cHHHHHHHHHCCCCeee-cCC-
Q 036939 32 LKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPT-------SKTTHDQAVSLGIPLSD-LDS- 102 (215)
Q Consensus 32 ~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~t-------S~~t~~~~~~~Gi~v~~-l~~- 102 (215)
.++.+|.-+-++|.||++|=.=+=|-+ +.+.|....+++. ..+|+-| .......++++|||+.- ++.
T Consensus 116 sR~~IA~l~~~Fi~dg~~ILtHg~SRv--Vl~~L~~Aa~~~~--~F~V~vTEsrPd~sG~lm~~~L~~~~IPvtlvlDSa 191 (313)
T KOG1466|consen 116 SRQKIAMLAQDFITDGCTILTHGYSRV--VLEVLLTAAQNKK--RFRVYVTESRPDGSGKLMAKELKKLGIPVTLVLDSA 191 (313)
T ss_pred HHHHHHHHhhhHhhCCCEEEEcchhHH--HHHHHHHHHhcCc--eEEEEEecCCCCCchhHHHHHHHhcCCCeEEEehhh
Confidence 467788899999999998866554433 2234433223222 3556555 67788899999999663 232
Q ss_pred ----CCceeEEEecCCcccC
Q 036939 103 ----HPVIDLAIDGADEVDP 118 (215)
Q Consensus 103 ----~~~iDl~iDGaDeVd~ 118 (215)
.+++|+.|=||++|-+
T Consensus 192 VgyvMe~vD~VlVGAEGVvE 211 (313)
T KOG1466|consen 192 VGYVMERVDLVLVGAEGVVE 211 (313)
T ss_pred HHHHHhhccEEEEccceeee
Confidence 2589999999999965
No 45
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA. Acetyl-CoA hydrolase 3.1.2.1 from EC from yeast catalyses the formation of acetate from acetyl-CoA, CoA transferase (CAT1) 2.8.3 from EC produces succinyl-CoA, and acetate-CoA transferase 2.8.3.8 from EC utilises acyl-CoA and acetate to form acetyl-CoA.; GO: 0003824 catalytic activity, 0006084 acetyl-CoA metabolic process; PDB: 2NVV_C 2G39_A 3D3U_A 3S8D_B 3QLI_B 3QLK_B 3GK7_B 3QDQ_A 3EH7_A 2OAS_A ....
Probab=83.81 E-value=1.9 Score=36.41 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCcCCCEEEeCc--C-hhHHHHHHHHHhHHh
Q 036939 33 KKIAANKSVEFVKSGMVVGLGT--D-STATHAVDKIGELLH 70 (215)
Q Consensus 33 K~~aA~~A~~~V~~g~vIGLGs--G-STv~~~i~~L~~~~~ 70 (215)
|..-|++|+++|++|+.|+.|. + ++-..+.++|++|..
T Consensus 8 Kl~sa~eA~~~Ik~g~~I~~~~~~~~~~p~~l~~aL~~r~~ 48 (198)
T PF02550_consen 8 KLVSAEEAASLIKSGDWIAFGGFTFAGEPKALPEALAQRAE 48 (198)
T ss_dssp HBE-HHHHHTTS-TT-EEEE-SCTGGGS-HHHHHHHHHHHH
T ss_pred hcCCHHHHHHhCCCCCEEEeCCcccccCHHHHHHHHHHHHH
Confidence 3344899999999999999996 3 345567788876644
No 46
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=83.05 E-value=4.6 Score=30.46 Aligned_cols=69 Identities=10% Similarity=0.155 Sum_probs=52.2
Q ss_pred CeeEEEccccHHHHHHHHhcchhcCCCceeecceeE-ecCCCEEEeecCCCCCCCHHHHHHHHccccCeEEeeeecccc
Q 036939 121 AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYE-KHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDM 198 (215)
Q Consensus 121 plPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR~p~v-TDnGN~IlD~~f~~~i~dp~~l~~~L~~i~pGVVe~GLF~~~ 198 (215)
.+-|.+.|.....|.+.|..+ .|++. ... +++|.+|+=+--.. ..+.-+.-..|+.+ |||+...|-+..
T Consensus 9 SlVV~~~Pe~~~~V~~~l~~i---pg~Ev----h~~d~~~GKiVVtiE~~~-~~~~~~~i~~I~~l-~GVlsa~lVYh~ 78 (87)
T PRK10553 9 SLVVQAKSERISDISTQLNAF---PGCEV----AVSDAPSGQLIVVVEAED-SETLLQTIESVRNV-EGVLAVSLVYHQ 78 (87)
T ss_pred EEEEEeChHHHHHHHHHHHcC---CCcEE----EeecCCCCeEEEEEEeCC-hHHHHHHHHHHHcC-CCceEEEEEEEE
Confidence 366788899999999999998 47765 244 46899988776543 45555666789999 999998887654
No 47
>COG1788 AtoD Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit [Lipid metabolism]
Probab=79.35 E-value=3.1 Score=36.57 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCcCCCEEEeCcC---hhHHHHHHHHHhHHhcCCCCCEEEecCc
Q 036939 33 KKIAANKSVEFVKSGMVVGLGTD---STATHAVDKIGELLHQGKLKNIVGIPTS 83 (215)
Q Consensus 33 K~~aA~~A~~~V~~g~vIGLGsG---STv~~~i~~L~~~~~~~~l~~i~~V~tS 83 (215)
|...+++|+++++|||+|.+|+= .+=..++.+|.+ +| .+|+|+|++.
T Consensus 4 k~~s~~ea~~~~~dG~ti~~gGFg~~g~P~alI~ali~---~G-vkdLt~I~n~ 53 (220)
T COG1788 4 KLSSAEEAVANVKDGDTIMIGGFGTCGIPEALIHALIR---QG-VKDLTVISNN 53 (220)
T ss_pred hhhhHHHHHhhCCCCCEEEEccccccCChHHHHHHHHH---cC-CcceEEEecC
Confidence 66677899999999999988753 345667777754 44 5699999987
No 48
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=77.27 E-value=22 Score=34.45 Aligned_cols=171 Identities=15% Similarity=0.194 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHh------cCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcH-HHHHHHHHCCC-Cee
Q 036939 27 LTQDELKKIAANKSVE------FVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSK-TTHDQAVSLGI-PLS 98 (215)
Q Consensus 27 ~~~~~~K~~aA~~A~~------~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~-~t~~~~~~~Gi-~v~ 98 (215)
.+.+.....+|+.|++ |+++|...=-|+|-+...+.+.|.++.++.+.+. .+.--.. ...-.+-+.|+ +-+
T Consensus 203 ~T~~P~~L~IA~~aa~vI~asg~~kdGFSfQtGaGGaSLAv~~~l~~~M~~~~Ik~-sFa~GGIT~~~v~mleeGL~~~l 281 (466)
T PF04223_consen 203 ITKDPRELLIAEYAAKVIEASGYFKDGFSFQTGAGGASLAVARFLREKMREKGIKG-SFALGGITGYMVDMLEEGLFRKL 281 (466)
T ss_dssp ----HHHHHHHHHHHHHHHCTTT-STTEEEE--SSHHHHHHHHHHHHHHHHTT--E-EEEECEE-HHHHHHHHTTSECEE
T ss_pred ccCChHHHHHHHHHHHHHHhCcceecCceEEcCCchHHHHHHHHHHHHHHHcCcEE-EEECCcccHHHHHHHHcccchhh
Confidence 3445566777877776 5699999999999999999999998877655432 1211111 11122233342 211
Q ss_pred ------------------------------ec---CCCCceeEEEecCCcccCCC-------------------------
Q 036939 99 ------------------------------DL---DSHPVIDLAIDGADEVDPGL------------------------- 120 (215)
Q Consensus 99 ------------------------------~l---~~~~~iDl~iDGaDeVd~K~------------------------- 120 (215)
+. .-+.++|+.|.||=|||-.|
T Consensus 282 ~DvQ~FDl~Av~S~~~np~H~eisas~YAnP~nkg~~vn~LD~viLgAlEvD~dFNVNV~TgSdG~i~Ga~GGH~DtAag 361 (466)
T PF04223_consen 282 LDVQCFDLDAVESIRENPNHQEISASEYANPHNKGAVVNQLDVVILGALEVDTDFNVNVLTGSDGVIRGASGGHPDTAAG 361 (466)
T ss_dssp EECEESSHHHHHHHHHTTTEEE--HHHHC-TTSS--GGGG-SEEEE--SEEETT--EE-SB-TTS-B-CE-CTHHHHHHH
T ss_pred eecccCCHHHHHHHHhCCCcEEEcHHHhcCCCCCCcccccccEEEEeeeeeccccceeEEECCCceEecCCCCCcchhhh
Confidence 11 13458999999999999733
Q ss_pred -CeeEEEccccHHHHHHHHhcchhcCCCceeecc-------------eeEecCCCEEE-------eecCCC--CCCCHHH
Q 036939 121 -AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRT-------------CYEKHNGNCII-------DLYFKK--DIGDMEV 177 (215)
Q Consensus 121 -plPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR~-------------p~vTDnGN~Il-------D~~f~~--~i~dp~~ 177 (215)
.+.|-|.| |-+ |--|.++. -+|||.|=-|= +..-.. |+.+.++
T Consensus 362 AkltIiv~P---------L~r-----gRip~v~d~V~tv~TPGetVDVlVTe~GIAVNP~R~DL~e~l~~a~lp~~~Iee 427 (466)
T PF04223_consen 362 AKLTIIVAP---------LVR-----GRIPTVVDKVTTVTTPGETVDVLVTERGIAVNPRRPDLIERLKKAGLPLKTIEE 427 (466)
T ss_dssp SSEEEEE-----------SEE-----TTEESEESS-SS-SB-GGG--EEEETTEEEE-TT-HHHHHHCCCTTS-EE-HHH
T ss_pred cCeEEEEch---------hhc-----CCCCEEeCceeEEcCCCCceeEEEecCceeeCCCCHHHHHHHHhCCCCEEEHHH
Confidence 56777776 222 33344443 38888884331 110000 2347788
Q ss_pred HHHHHccccCeEEeeeeccccccEEEEEcCCC--eEEec
Q 036939 178 ASNRILRLIAGVVEHGMFLDMATTVIIVGKLG--VTIKN 214 (215)
Q Consensus 178 l~~~L~~i~pGVVe~GLF~~~a~~vivg~~~G--v~~~~ 214 (215)
|.+.-.++ .|.=+-==|.+.. ..++-+.|| +.++.
T Consensus 428 L~~~A~~i-~G~P~~i~~~d~i-VavVeyRDGtviDvir 464 (466)
T PF04223_consen 428 LKEKAEKI-TGKPDPIEFTDRI-VAVVEYRDGTVIDVIR 464 (466)
T ss_dssp HHHHHHHH-H-S-----EEEEE-EEEEE-TTSSEEEEEE
T ss_pred HHHHHHHh-cCCCCCCCCCCeE-EEEEEecCCceEEEEE
Confidence 88877777 6765543344322 235667888 55543
No 49
>TIGR03458 YgfH_subfam succinate CoA transferases. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins detected by this model, possibly erroneously.
Probab=74.33 E-value=3.9 Score=39.76 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=29.7
Q ss_pred HHHHHHhcCcCCCEEEeCcC---hhHHHHHHHHHhHHh
Q 036939 36 AANKSVEFVKSGMVVGLGTD---STATHAVDKIGELLH 70 (215)
Q Consensus 36 aA~~A~~~V~~g~vIGLGsG---STv~~~i~~L~~~~~ 70 (215)
-+++|+++|+||+.|.+|.. .+-..++++|.++.+
T Consensus 4 SaeEAv~lIkDGdtI~iGgftg~~~P~aLl~ALa~r~~ 41 (485)
T TIGR03458 4 SADEAAALIKDGMTVGMSGFTPAGYPKAVPAALAKRAK 41 (485)
T ss_pred CHHHHHHhCCCCCEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999974 688899999988754
No 50
>PLN02891 IMP cyclohydrolase
Probab=70.39 E-value=16 Score=36.16 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcC--------cCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc----H---HHHHHHHHCCCC
Q 036939 32 LKKIAANKSVEFV--------KSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS----K---TTHDQAVSLGIP 96 (215)
Q Consensus 32 ~K~~aA~~A~~~V--------~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS----~---~t~~~~~~~Gi~ 96 (215)
.-...|.++++|+ ++|++||+|+|-|..--.-+++-......+++- ++.|. + ++-.+|++.|+.
T Consensus 434 ~DL~FAwkvvK~vKSNAIV~akd~~tvGIGaGQ~sRVda~~iA~~kA~~~~~G~-vlASDAFFPF~~~D~ve~aa~~Gv~ 512 (547)
T PLN02891 434 EDAKFAWLCVKHVKSNAIVVAKNNRMLGMGSGQPNRVESLRIALEKAGEEAKGA-ALASDAFFPFAWNDAVEEACQAGVK 512 (547)
T ss_pred HHHHHHHHHHhhccCceEEEEeCCeEEEecCCCccHHHHHHHHHHHhccccCCe-EEEecccCCCCCCccHHHHHHhCCE
Confidence 3455689999988 578899999999987776666543332333332 22221 2 666778888887
Q ss_pred ee
Q 036939 97 LS 98 (215)
Q Consensus 97 v~ 98 (215)
-+
T Consensus 513 aI 514 (547)
T PLN02891 513 VI 514 (547)
T ss_pred EE
Confidence 54
No 51
>TIGR01584 citF citrate lyase, alpha subunit. This is a model of the alpha subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The seed contains an experimentally characterized member from Lactococcus lactis subsp. lactis. The model covers both Gram positive and Gram negative bacteria. It is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in between the noise cutoff and trusted cutoff.
Probab=70.27 E-value=9.4 Score=37.33 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHhcC------cCCCEEEeCcChhHHHHHHHHHhHHh
Q 036939 28 TQDELKKIAANKSVEFV------KSGMVVGLGTDSTATHAVDKIGELLH 70 (215)
Q Consensus 28 ~~~~~K~~aA~~A~~~V------~~g~vIGLGsGSTv~~~i~~L~~~~~ 70 (215)
+.++..+++|+.++++| +||.++=+|.|.....+.+.|.++.+
T Consensus 227 t~~p~e~~IA~~vA~lI~~s~~~~DG~tlQ~GiGgip~AV~~~L~~~mk 275 (492)
T TIGR01584 227 TKDPKELLIAKMANDVIVNSGYFKDGFSFQTGTGGAALAVTRFLKEKMI 275 (492)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCCCEEEccCCHHHHHHHHHHHHHHH
Confidence 44577888999999987 89999999999999999999987744
No 52
>COG0427 ACH1 Acetyl-CoA hydrolase [Energy production and conversion]
Probab=69.62 E-value=6.4 Score=38.49 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=34.6
Q ss_pred HHHHHHHH--HHHHHhcCcCCCEEEeC--cChhHHHHHHHHHhHHhcC
Q 036939 29 QDELKKIA--ANKSVEFVKSGMVVGLG--TDSTATHAVDKIGELLHQG 72 (215)
Q Consensus 29 ~~~~K~~a--A~~A~~~V~~g~vIGLG--sGSTv~~~i~~L~~~~~~~ 72 (215)
.+..++.. +.+|+.+|++||.||.| ++.+-..+-++|++|.++.
T Consensus 9 ~~~~~k~~~t~~Eaa~~i~~g~~lg~sft~ag~pkalp~aLA~r~~~~ 56 (501)
T COG0427 9 RELYKKKLITPEEAASLIKDGDHLGMSFTGAGEPKALPEALARRAEAN 56 (501)
T ss_pred HHHhhhhcCCHHHHHHhhcCCCEEeecccCCCCchhhHHHHHHHHHhc
Confidence 34444444 89999999999999998 4567888999999986654
No 53
>PF01144 CoA_trans: Coenzyme A transferase; InterPro: IPR004165 Coenzyme A (CoA) transferases belong to an evolutionary conserved [, ] family of enzymes catalyzing the reversible transfer of CoA from one carboxylic acid to another. They have been identified in many prokaryotes and in mammalian tissues. The bacterial enzymes are heterodimer of two subunits (A and B) of about 25 Kd each while eukaryotic SCOT consist of a single chain which is colinear with the two bacterial subunits.; GO: 0008410 CoA-transferase activity, 0008152 metabolic process; PDB: 3DLX_C 1K6D_A 3OXO_H 1M3E_D 3K6M_C 2NRC_A 1OOY_B 1O9L_C 1OOZ_A 1OPE_B ....
Probab=69.32 E-value=9.2 Score=32.34 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=19.6
Q ss_pred HHHHh-cCcCCCEEEeC----cChhHHHHHHHHHhH
Q 036939 38 NKSVE-FVKSGMVVGLG----TDSTATHAVDKIGEL 68 (215)
Q Consensus 38 ~~A~~-~V~~g~vIGLG----sGSTv~~~i~~L~~~ 68 (215)
.+|+. +|+||++|++| +| +-..++.+|+++
T Consensus 5 ~eAva~~I~dG~~v~~GG~~~~~-~P~al~~~l~r~ 39 (217)
T PF01144_consen 5 AEAVARLIRDGDTVAVGGFGSSG-IPMALVRELARQ 39 (217)
T ss_dssp HHHHTCT--TTEEEEE-SBTTBT-HHHHHHHHHHHH
T ss_pred HHHHhccCCCCCEEEECCCcccC-cHHHHHHHHHhc
Confidence 34555 99999999999 66 445777888765
No 54
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=67.93 E-value=12 Score=29.36 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=44.6
Q ss_pred HHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHH-HHHHHC---CCCeeecCCC
Q 036939 37 ANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH-DQAVSL---GIPLSDLDSH 103 (215)
Q Consensus 37 A~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~-~~~~~~---Gi~v~~l~~~ 103 (215)
|++...-++...++=+|+|-+...++..|.++ +.++++++.=+.+-+ .+++++ ++...++++.
T Consensus 3 a~~~~~~l~~~~vlviGaGg~ar~v~~~L~~~----g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 3 AKKKFGDLKGKRVLVIGAGGAARAVAAALAAL----GAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp HCTHHSTGTTSEEEEESSSHHHHHHHHHHHHT----TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGH
T ss_pred hHHhcCCcCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEEECCHHHHHHHHHHcCccccceeeHHHH
Confidence 44445567788899999999999999999764 244688888887655 455555 3445566554
No 55
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=65.75 E-value=27 Score=31.22 Aligned_cols=104 Identities=18% Similarity=0.255 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHh--cCcCCCE---EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHH----HCCCCeee
Q 036939 29 QDELKKIAANKSVE--FVKSGMV---VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAV----SLGIPLSD 99 (215)
Q Consensus 29 ~~~~K~~aA~~A~~--~V~~g~v---IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~----~~Gi~v~~ 99 (215)
.+++-++--...++ -+++|+. ||-|-|+++.+++++-+ . .+++|+.|..-...++ +.|++
T Consensus 43 Le~AQ~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g-------~-~v~gitlS~~Q~~~a~~~~~~~gl~--- 111 (273)
T PF02353_consen 43 LEEAQERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG-------C-HVTGITLSEEQAEYARERIREAGLE--- 111 (273)
T ss_dssp HHHHHHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----------EEEEEES-HHHHHHHHHHHHCSTSS---
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC-------c-EEEEEECCHHHHHHHHHHHHhcCCC---
Confidence 44443333344444 4799995 79999999988887643 2 5899999998887664 44543
Q ss_pred cCCCCceeEEEecCCcccCCC--CeeEEEcc----ccHHHHHHHHhcchhcCCCc
Q 036939 100 LDSHPVIDLAIDGADEVDPGL--AVPVEVVP----VCWKFTANRFPDLFKDCGCV 148 (215)
Q Consensus 100 l~~~~~iDl~iDGaDeVd~K~--plPVEV~P----~a~~~v~~~l~~l~~~~G~~ 148 (215)
+.+++-..-..+++.+| -+-||..- ..+....+++.+++. .|+.
T Consensus 112 ----~~v~v~~~D~~~~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~ 161 (273)
T PF02353_consen 112 ----DRVEVRLQDYRDLPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGR 161 (273)
T ss_dssp ----STEEEEES-GGG---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEE
T ss_pred ----CceEEEEeeccccCCCCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcE
Confidence 12222221112223344 25566553 456777777777643 3443
No 56
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=65.69 E-value=30 Score=26.90 Aligned_cols=131 Identities=16% Similarity=0.203 Sum_probs=78.1
Q ss_pred EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCCCCceeEEEecCCc--ccCCCC-eeEEE
Q 036939 50 VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADE--VDPGLA-VPVEV 126 (215)
Q Consensus 50 IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~~~~iDl~iDGaDe--Vd~K~p-lPVEV 126 (215)
.=+|+|+.=.+++-+|.+. | . +++++..+. ..+..++.|+.+...+.-..++....-.++ -..++. |=|-+
T Consensus 2 ~I~G~GaiG~~~a~~L~~~---g-~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v 75 (151)
T PF02558_consen 2 LIIGAGAIGSLYAARLAQA---G-H-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAV 75 (151)
T ss_dssp EEESTSHHHHHHHHHHHHT---T-C-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-S
T ss_pred EEECcCHHHHHHHHHHHHC---C-C-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEe
Confidence 3478999888888888652 2 2 699999999 666688889988766522234444433333 112332 23333
Q ss_pred ccccHHHHHHHHhcchhcCCCceeecceeEecCCCEEEeecCCCCCCCHHHHHHHH--ccccCeEEeeeeccccccEEE
Q 036939 127 VPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKKDIGDMEVASNRI--LRLIAGVVEHGMFLDMATTVI 203 (215)
Q Consensus 127 ~P~a~~~v~~~l~~l~~~~G~~~~lR~p~vTDnGN~IlD~~f~~~i~dp~~l~~~L--~~i~pGVVe~GLF~~~a~~vi 203 (215)
--+..+.+++.++. ++.++. .|+=+. +.+...+.+++.+ ..+..|++.+|-...-...+-
T Consensus 76 Ka~~~~~~l~~l~~--------------~~~~~t-~iv~~q--NG~g~~~~l~~~~~~~~v~~g~~~~g~~~~~~~~v~ 137 (151)
T PF02558_consen 76 KAYQLEQALQSLKP--------------YLDPNT-TIVSLQ--NGMGNEEVLAEYFPRPRVLGGVTTIGAYRIGPGHVE 137 (151)
T ss_dssp SGGGHHHHHHHHCT--------------GEETTE-EEEEES--SSSSHHHHHHCHSTGSGEEEEEEEEEEEEEETTEEE
T ss_pred cccchHHHHHHHhh--------------ccCCCc-EEEEEe--CCCCcHHHHHHHcCCCcEEEEEEeEeEEEcCCeEEE
Confidence 45566666666554 344442 233122 2355677788777 455599999998765434343
No 57
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis]
Probab=64.84 E-value=22 Score=33.12 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCcCCC-EEEeCcChhHHHHHHHHHhHHhcCCCC--CEEEecCc--HHHHHHHHHCCCCeeecC------
Q 036939 33 KKIAANKSVEFVKSGM-VVGLGTDSTATHAVDKIGELLHQGKLK--NIVGIPTS--KTTHDQAVSLGIPLSDLD------ 101 (215)
Q Consensus 33 K~~aA~~A~~~V~~g~-vIGLGsGSTv~~~i~~L~~~~~~~~l~--~i~~V~tS--~~t~~~~~~~Gi~v~~l~------ 101 (215)
.+.+|..|.+++.++. ++-+|+..||..|+++-+++.| +++ -.-|.|.- ..-+..+.+.|+..+-+.
T Consensus 149 ~E~Ia~Qa~ehihsnEviLT~g~SrTV~~FL~~A~kk~R--kf~viVaE~~p~~qgH~~Ak~la~~giettVI~daaVfA 226 (353)
T KOG1465|consen 149 RENIAVQAIEHIHSNEVILTLGSSRTVENFLKHAAKKGR--KFRVIVAEGAPNNQGHELAKPLAQAGIETTVIPDAAVFA 226 (353)
T ss_pred hHhHHHHHHHHhccCceEEecCccHHHHHHHHHHHhccC--ceEEEEeecCCcccchHhhHHHHHcCCeeEEeccHHHHH
Confidence 5678999999998887 5678999999999887665322 121 01123433 344455567899844222
Q ss_pred CCCceeEEEecCCcccC------------------CCCeeEEEccc
Q 036939 102 SHPVIDLAIDGADEVDP------------------GLAVPVEVVPV 129 (215)
Q Consensus 102 ~~~~iDl~iDGaDeVd~------------------K~plPVEV~P~ 129 (215)
-.+++...|-|+-.|-. ++.+||-|...
T Consensus 227 ~MsrVnKVIigt~avl~NGgl~~~~G~~~vAlaAk~h~vPv~VlAp 272 (353)
T KOG1465|consen 227 MMSRVNKVIIGTHAVLANGGLRAPSGVHTVALAAKHHSVPVIVLAP 272 (353)
T ss_pred HhhhcceEEEEeeeEecCCCeeccchHHHHHHHHHhcCCcEEEecc
Confidence 23678888999888743 35777777643
No 58
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=64.02 E-value=16 Score=31.71 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=39.1
Q ss_pred CEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 48 MVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 48 ~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
..|=+-|++++..|.+.+++... .+....++.-|.+|+..|+++|++..
T Consensus 184 d~v~ftS~~~~~~~~~~~~~~~~--~~~~~~~~~ig~~ta~a~~~~G~~~~ 232 (255)
T PRK05752 184 NGLVVSSGQGFEHLQQLAGADWP--ELARLPLFVPSPRVAEQARAAGAQTV 232 (255)
T ss_pred CEEEECCHHHHHHHHHHhChhHH--HhcCceEEEeCHHHHHHHHHcCCCce
Confidence 67888999999999998764321 13357788999999999999998755
No 59
>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated
Probab=61.75 E-value=19 Score=33.06 Aligned_cols=57 Identities=16% Similarity=0.231 Sum_probs=42.5
Q ss_pred hcCcCC--CEEEeCcChhHHHHHHHHHhH-----HhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 42 EFVKSG--MVVGLGTDSTATHAVDKIGEL-----LHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 42 ~~V~~g--~vIGLGsGSTv~~~i~~L~~~-----~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
+.++.| ..|-+-|+||+..|.+.+.+. +.+....++++++=+..|+..|+++|+++.
T Consensus 195 ~~l~~~~~d~v~FtS~stv~~f~~~l~~~~~~~~~~~~~~~~~~i~aIGp~Ta~al~~~G~~~~ 258 (381)
T PRK07239 195 DAIASRGLDAVTFTSAPAVAALLERAREMGLLDQLLAALRTDVLAACVGPVTAAPLVRAGVPTS 258 (381)
T ss_pred HHHHcCCccEEEEcCHHHHHHHHHHHHHcCChHHHHHhhccCCEEEEECHHHHHHHHHcCCCcc
Confidence 344444 689999999999999988642 111112357889999999999999998853
No 60
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=61.47 E-value=18 Score=30.86 Aligned_cols=48 Identities=8% Similarity=-0.208 Sum_probs=36.7
Q ss_pred CEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCC
Q 036939 48 MVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGI 95 (215)
Q Consensus 48 ~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi 95 (215)
..|-+-|+||+..|.+.+++......+.+.++|.-|..|++.+++.|.
T Consensus 172 d~i~f~S~~~~~~f~~~~~~~~~~~~l~~~~~v~Ig~~ta~al~~~~~ 219 (240)
T PRK09189 172 DAVLLYSRVAARRFFALMRLSIAPPADEKTRFLCLSARVAAALPASLR 219 (240)
T ss_pred CEEEEeCHHHHHHHHHHHhhhcCcccccccCeEEeCHHHHHHHhhccc
Confidence 679999999999999988643211223467789999999998887754
No 61
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=60.23 E-value=32 Score=33.89 Aligned_cols=65 Identities=22% Similarity=0.271 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcC--------cCCCEEEeCcChhHHHHHHHHHhHHh---cCCCCCEEEecCc-----HHHHHHHHHCCCC
Q 036939 33 KKIAANKSVEFV--------KSGMVVGLGTDSTATHAVDKIGELLH---QGKLKNIVGIPTS-----KTTHDQAVSLGIP 96 (215)
Q Consensus 33 K~~aA~~A~~~V--------~~g~vIGLGsGSTv~~~i~~L~~~~~---~~~l~~i~~V~tS-----~~t~~~~~~~Gi~ 96 (215)
-..-|.++++|+ ++|++||+|+|-|..--.-+++-... ...+++. +++|. -++-..+++.|++
T Consensus 398 dL~FAwkv~k~vKSNAIv~akd~~tvGiGaGQ~sRV~s~riA~~kA~~~~~~~~G~-vlASDAFFPF~D~ve~aa~aGi~ 476 (511)
T TIGR00355 398 DLLFAWKVAKHVKSNAIVYAKNNMTVGVGAGQMSRVGSAKIAGIKADDEGLEAKGS-SLASDAFFPFRDGVEEAAAAGIT 476 (511)
T ss_pred HHHHHHHHHhhccCceEEEEeCCeEEEecCCCccHHHHHHHHHHHHHhhCCCccCc-EEEeccccCCCccHHHHHHcCCE
Confidence 455689999988 58899999999998776666653322 1122222 22211 2455667777877
Q ss_pred ee
Q 036939 97 LS 98 (215)
Q Consensus 97 v~ 98 (215)
-+
T Consensus 477 aI 478 (511)
T TIGR00355 477 CI 478 (511)
T ss_pred EE
Confidence 44
No 62
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=58.55 E-value=31 Score=33.29 Aligned_cols=78 Identities=10% Similarity=0.145 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHHhcCcCCCEEEeCcCh---hHHHHHHHHHhHHhcCCCCCEEEec---CcHHHH----HHHHHCCC
Q 036939 26 GLTQDELKKIAANKSVEFVKSGMVVGLGTDS---TATHAVDKIGELLHQGKLKNIVGIP---TSKTTH----DQAVSLGI 95 (215)
Q Consensus 26 m~~~~~~K~~aA~~A~~~V~~g~vIGLGsGS---Tv~~~i~~L~~~~~~~~l~~i~~V~---tS~~t~----~~~~~~Gi 95 (215)
|...+.+++...+-...-+-+--.--.|+|+ +...|.+++++++++.+...+..+| |+.++. +..++.||
T Consensus 286 v~PlD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GI 365 (431)
T TIGR01917 286 VIPVDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGI 365 (431)
T ss_pred eeeHHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCC
Confidence 3346778887777677666666667778888 5567899999999988875444453 345543 56677899
Q ss_pred CeeecCCC
Q 036939 96 PLSDLDSH 103 (215)
Q Consensus 96 ~v~~l~~~ 103 (215)
|++-+-.+
T Consensus 366 PvV~i~~~ 373 (431)
T TIGR01917 366 PVVHICTV 373 (431)
T ss_pred CEEEEeec
Confidence 98855444
No 63
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=57.30 E-value=40 Score=29.55 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCcCC-CEEEeCcChh---------------HHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCe
Q 036939 34 KIAANKSVEFVKSG-MVVGLGTDST---------------ATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPL 97 (215)
Q Consensus 34 ~~aA~~A~~~V~~g-~vIGLGsGST---------------v~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v 97 (215)
..+.+.|.+++++| .+|=+|.+|| +..+++.|.+.. +. .+-+=|++.++.+.|-+.|.++
T Consensus 24 ~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~---~~-piSIDT~~~~v~~aaL~~g~~i 99 (258)
T cd00423 24 DKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEP---DV-PISVDTFNAEVAEAALKAGADI 99 (258)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcC---CC-eEEEeCCcHHHHHHHHHhCCCE
Confidence 45667788899998 5999999999 445555553211 23 3667788888888898889776
Q ss_pred e
Q 036939 98 S 98 (215)
Q Consensus 98 ~ 98 (215)
+
T Consensus 100 I 100 (258)
T cd00423 100 I 100 (258)
T ss_pred E
Confidence 6
No 64
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=56.70 E-value=57 Score=26.37 Aligned_cols=61 Identities=7% Similarity=0.071 Sum_probs=34.2
Q ss_pred HHHHHHHhcCcCCCEEEeCc--ChhHHHHHHHHHhHHhcCCCCCEEE-------ecCcHHH--HHHHHHCCCCee
Q 036939 35 IAANKSVEFVKSGMVVGLGT--DSTATHAVDKIGELLHQGKLKNIVG-------IPTSKTT--HDQAVSLGIPLS 98 (215)
Q Consensus 35 ~aA~~A~~~V~~g~vIGLGs--GSTv~~~i~~L~~~~~~~~l~~i~~-------V~tS~~t--~~~~~~~Gi~v~ 98 (215)
...++|.++ +-.+||+.+ |+|...+ +++.+++++.+++++.+ +|.+... ...++++|+.-+
T Consensus 43 ~~v~aa~~~--~adiVglS~l~~~~~~~~-~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~v 114 (134)
T TIGR01501 43 EFIKAAIET--KADAILVSSLYGHGEIDC-KGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRV 114 (134)
T ss_pred HHHHHHHHc--CCCEEEEecccccCHHHH-HHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEE
Confidence 344555554 567888877 6555443 55556666655655544 2333332 346788886533
No 65
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=56.38 E-value=17 Score=34.60 Aligned_cols=36 Identities=17% Similarity=0.379 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcC--------cCCCEEEeCcChhHHHHHHHHH
Q 036939 31 ELKKIAANKSVEFV--------KSGMVVGLGTDSTATHAVDKIG 66 (215)
Q Consensus 31 ~~K~~aA~~A~~~V--------~~g~vIGLGsGSTv~~~i~~L~ 66 (215)
-.-...|..+++|+ ++|++||+|+|-+..--.-+|+
T Consensus 213 ~~DL~fAw~vvK~vkSNaIv~akdg~tvGIGaGQ~SRVd~~rlA 256 (390)
T PRK07106 213 KRDLIIALITLKYTQSNSVCYAKDGQAIGIGAGQQSRIHCTRLA 256 (390)
T ss_pred HHHHHHHHHHHHhcccceEEEEeCCeEEEeCCCCcchHHHHHHH
Confidence 33456789999887 6889999999999866555565
No 66
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=55.50 E-value=17 Score=32.14 Aligned_cols=51 Identities=18% Similarity=0.203 Sum_probs=40.0
Q ss_pred CCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 47 GMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 47 g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
-.++-.-||||+..|.+.+.+.... .+.+..++.-|.+|+..++++|++.+
T Consensus 191 ~d~i~ftS~sav~~f~~~l~~~~~~-~l~~~~~v~is~rtA~~a~~~G~~~v 241 (266)
T PRK08811 191 RSVLALSSAEALTLILQQLPDALRR-ALQQRPVVASSDRLLDAAHAAGFIHV 241 (266)
T ss_pred CCEEEEChHHHHHHHHHHhhhhHHH-HHhCCCEEEeCHHHHHHHHHcCCCce
Confidence 4689999999999999988653211 13356778899999999999998855
No 67
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=55.15 E-value=19 Score=30.00 Aligned_cols=53 Identities=19% Similarity=0.072 Sum_probs=41.2
Q ss_pred CCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 46 SGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 46 ~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
+-..|-+-|.+++..|.+.+.+......+.+.++++-+..|+..++++|+...
T Consensus 177 ~~d~ivftS~~~v~~~~~~~~~~~~~~~~~~~~~~aiG~~Ta~~l~~~G~~~~ 229 (249)
T PRK05928 177 EVDAVIFTSPSTVRAFFSLAPELGRREWLLSCKAVVIGERTAEALRELGIKVI 229 (249)
T ss_pred CCCEEEECCHHHHHHHHHHhcccchhHHHhCCeEEEeCHHHHHHHHHcCCCcc
Confidence 56789999999999999988643111113367899999999999999998744
No 68
>smart00798 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme. This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP.
Probab=54.58 E-value=19 Score=33.19 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcC--------cCCCEEEeCcChhHHHHHHHHH
Q 036939 33 KKIAANKSVEFV--------KSGMVVGLGTDSTATHAVDKIG 66 (215)
Q Consensus 33 K~~aA~~A~~~V--------~~g~vIGLGsGSTv~~~i~~L~ 66 (215)
-...|.++++|+ ++|++||+|+|-|..--.-+++
T Consensus 266 dL~FAwkv~k~vKSNAIv~ak~~~tvGiGaGQ~sRVda~~iA 307 (311)
T smart00798 266 DLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIA 307 (311)
T ss_pred HhHHHHHHHhhcccceEEEEeCCeEEEecCCCccHHHHHHHH
Confidence 455689999888 5889999999998765554443
No 69
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.57 E-value=66 Score=30.30 Aligned_cols=63 Identities=24% Similarity=0.357 Sum_probs=40.4
Q ss_pred CcCCCEEEe----CcChhHHHHHHHHHhHHhcCCCCCEEEecCcHH-HHHHHHHCCCC--eeecCCC-------CceeEE
Q 036939 44 VKSGMVVGL----GTDSTATHAVDKIGELLHQGKLKNIVGIPTSKT-THDQAVSLGIP--LSDLDSH-------PVIDLA 109 (215)
Q Consensus 44 V~~g~vIGL----GsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~-t~~~~~~~Gi~--v~~l~~~-------~~iDl~ 109 (215)
+.+|+.+|+ |=|+-...++++.+ + .++++++|.. -++.++.+|-. +.+.++- ...|.-
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAMG-------~-rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~ 250 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAMG-------M-RVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGG 250 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHhC-------c-EEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCc
Confidence 458987665 34777777777665 3 4899999984 44666778977 3333221 245666
Q ss_pred EecCC
Q 036939 110 IDGAD 114 (215)
Q Consensus 110 iDGaD 114 (215)
+||+-
T Consensus 251 ~~~v~ 255 (360)
T KOG0023|consen 251 IDTVS 255 (360)
T ss_pred ceeee
Confidence 66665
No 70
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=54.39 E-value=33 Score=28.40 Aligned_cols=63 Identities=24% Similarity=0.178 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCcCCCEEE----eCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 30 DELKKIAANKSVEFVKSGMVVG----LGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIG----LGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
+++..+.|+.-+..++.|+||- ||+|-|+ |++.|++.+. . +-.+.++++...+.=...++++.
T Consensus 8 ~~~t~~lg~~l~~~l~~g~Vv~L~GdLGAGKTt--f~rgi~~~Lg---~-~~~V~SPTFtlv~~Y~~~~~~ly 74 (149)
T COG0802 8 EEATLALGERLAEALKAGDVVLLSGDLGAGKTT--LVRGIAKGLG---V-DGNVKSPTFTLVEEYEEGRLPLY 74 (149)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEcCCcCChHH--HHHHHHHHcC---C-CCcccCCCeeeehhhcCCCCcEE
Confidence 4566677888888889999997 5999987 5577665332 1 33455666655443333344444
No 71
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=54.38 E-value=1.1e+02 Score=26.26 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhc-------------------CCCCCEEEecC---cHHHHH
Q 036939 31 ELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQ-------------------GKLKNIVGIPT---SKTTHD 88 (215)
Q Consensus 31 ~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~-------------------~~l~~i~~V~t---S~~t~~ 88 (215)
..+...|...+..+..|.++-+||-.-....++..+++... -.++++.+|.. ..+.-.
T Consensus 46 ~~~L~~A~~~i~~i~~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~~~~~~Pdlliv~dp~~~~~Av~ 125 (196)
T TIGR01012 46 DERLRVAAKFLVRIEPEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQKAFREPEVVVVTDPRADHQALK 125 (196)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccccccCCCCEEEEECCccccHHHH
Confidence 34455555555555589999999999999999888876421 12355555543 234448
Q ss_pred HHHHCCCCeeecC
Q 036939 89 QAVSLGIPLSDLD 101 (215)
Q Consensus 89 ~~~~~Gi~v~~l~ 101 (215)
+|.++|||++.+-
T Consensus 126 EA~~l~IP~Iai~ 138 (196)
T TIGR01012 126 EASEVGIPIVALC 138 (196)
T ss_pred HHHHcCCCEEEEe
Confidence 8999999988663
No 72
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=54.19 E-value=52 Score=24.31 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=36.6
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeee
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSD 99 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~ 99 (215)
+|=+|.|.....+++.|.+. .. ++++|..+.+....+++.|++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~----~~-~vvvid~d~~~~~~~~~~~~~~i~ 46 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG----GI-DVVVIDRDPERVEELREEGVEVIY 46 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT----TS-EEEEEESSHHHHHHHHHTTSEEEE
T ss_pred eEEEcCCHHHHHHHHHHHhC----CC-EEEEEECCcHHHHHHHhccccccc
Confidence 45689999999999988652 22 699999999999999999988763
No 73
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=54.19 E-value=18 Score=30.14 Aligned_cols=51 Identities=14% Similarity=0.064 Sum_probs=41.0
Q ss_pred CCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 46 SGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 46 ~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
.-.+|-+-|++++..|.+.+.+.. ..+.++.+++-|..|+..++++|++..
T Consensus 168 ~~~~v~ftS~~~~~~~~~~~~~~~--~~~~~~~~~~ig~~ta~~l~~~g~~~~ 218 (231)
T PF02602_consen 168 EIDAVVFTSPSAVRAFLELLKKNG--ALLKRVPIVAIGPRTAKALRELGFKVD 218 (231)
T ss_dssp TTSEEEESSHHHHHHHHHHSSGHH--HHHTTSEEEESSHHHHHHHHHTT-SCS
T ss_pred CCCEEEECCHHHHHHHHHHhHhhh--hhhhCCEEEEECHHHHHHHHHcCCCce
Confidence 448999999999999999887531 113378899999999999999999864
No 74
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=53.73 E-value=26 Score=32.94 Aligned_cols=52 Identities=23% Similarity=0.383 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHH
Q 036939 29 QDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH 87 (215)
Q Consensus 29 ~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~ 87 (215)
+++.++ +++++-+ .+..-+||+|+|++.- .++.++.++. + .+..|||+-.+=
T Consensus 70 ~~ev~~-~~~~~~~-~~~d~vIGVGGGk~iD-~aK~~A~~~~---~-pfIsvPT~AS~D 121 (360)
T COG0371 70 EEEVER-LAAEAGE-DGADVVIGVGGGKTID-TAKAAAYRLG---L-PFISVPTIASTD 121 (360)
T ss_pred HHHHHH-HHHHhcc-cCCCEEEEecCcHHHH-HHHHHHHHcC---C-CEEEecCccccc
Confidence 444443 3333332 4456799999999764 3466665433 5 588999987663
No 75
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=53.72 E-value=51 Score=26.47 Aligned_cols=61 Identities=10% Similarity=0.111 Sum_probs=35.8
Q ss_pred HHHHHHHhcCcCCCEEEeCc--ChhHHHHHHHHHhHHhcCCCCCEEE-------ecCcHH--HHHHHHHCCCCee
Q 036939 35 IAANKSVEFVKSGMVVGLGT--DSTATHAVDKIGELLHQGKLKNIVG-------IPTSKT--THDQAVSLGIPLS 98 (215)
Q Consensus 35 ~aA~~A~~~V~~g~vIGLGs--GSTv~~~i~~L~~~~~~~~l~~i~~-------V~tS~~--t~~~~~~~Gi~v~ 98 (215)
.+.++|.++ +-++||+.+ |+|...+ +++.+++++.+++++.+ +|++.. ....++++|+.-+
T Consensus 41 ~~v~aa~~~--~adiVglS~L~t~~~~~~-~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~v 112 (128)
T cd02072 41 EFIDAAIET--DADAILVSSLYGHGEIDC-KGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRV 112 (128)
T ss_pred HHHHHHHHc--CCCEEEEeccccCCHHHH-HHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEE
Confidence 345555555 668899987 6666544 44444555555544433 233333 4577888888644
No 76
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=53.63 E-value=23 Score=32.02 Aligned_cols=56 Identities=18% Similarity=0.343 Sum_probs=40.9
Q ss_pred CEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHC-CCCeeecCCCCceeEEEe
Q 036939 48 MVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL-GIPLSDLDSHPVIDLAID 111 (215)
Q Consensus 48 ~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~-Gi~v~~l~~~~~iDl~iD 111 (215)
-+||.|.|+|+.++++... ...++.|=-..+...+|+++ +..-...+ .+++.+-||
T Consensus 81 LiiGgGdG~tlRevlkh~~-------ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~ 137 (282)
T COG0421 81 LIIGGGDGGTLREVLKHLP-------VERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIID 137 (282)
T ss_pred EEECCCccHHHHHHHhcCC-------cceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEec
Confidence 3799999999988888753 23688999999999999887 44322222 457777775
No 77
>PRK04148 hypothetical protein; Provisional
Probab=50.83 E-value=30 Score=28.03 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=40.5
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCCCCceeEE-EecCCcccCCCCeeEEEc
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLA-IDGADEVDPGLAVPVEVV 127 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~~~~iDl~-iDGaDeVd~K~plPVEV~ 127 (215)
.||+|+|..+. +.|.+ .| . +++++=.|....+.+++.++.++--+-. ..|+. --|||-|= ..--|.|..
T Consensus 22 eIG~GfG~~vA---~~L~~---~G-~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf-~p~~~~y~~a~liy-sirpp~el~ 91 (134)
T PRK04148 22 ELGIGFYFKVA---KKLKE---SG-F-DVIVIDINEKAVEKAKKLGLNAFVDDLF-NPNLEIYKNAKLIY-SIRPPRDLQ 91 (134)
T ss_pred EEEecCCHHHH---HHHHH---CC-C-EEEEEECCHHHHHHHHHhCCeEEECcCC-CCCHHHHhcCCEEE-EeCCCHHHH
Confidence 58888886443 33332 12 2 6889988888888888888775532222 22222 12334332 234566666
Q ss_pred ccc
Q 036939 128 PVC 130 (215)
Q Consensus 128 P~a 130 (215)
|.-
T Consensus 92 ~~~ 94 (134)
T PRK04148 92 PFI 94 (134)
T ss_pred HHH
Confidence 543
No 78
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=50.83 E-value=1.2e+02 Score=26.22 Aligned_cols=65 Identities=12% Similarity=0.117 Sum_probs=38.1
Q ss_pred cCcCCCEEEe-CcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeec-CC---CCceeEEEec
Q 036939 43 FVKSGMVVGL-GTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDL-DS---HPVIDLAIDG 112 (215)
Q Consensus 43 ~V~~g~vIGL-GsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l-~~---~~~iDl~iDG 112 (215)
.+++|..|-+ |+|+.-..+++.+..+ +. .+.+++++.+-...++++|...... .. -..+|+.||-
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~----G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~ 221 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALT----GP-DVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEA 221 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc----CC-eEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEEC
Confidence 3456654443 8776665555544332 23 4777777777778888888764321 11 1237777774
No 79
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=50.79 E-value=38 Score=27.20 Aligned_cols=57 Identities=11% Similarity=0.190 Sum_probs=40.2
Q ss_pred cccHHHHHHHHhcchhcCCCceeecc-eeEecCCCEEEeecCCCCCCCHHHH-HHHHccccCeEEeee
Q 036939 128 PVCWKFTANRFPDLFKDCGCVAKLRT-CYEKHNGNCIIDLYFKKDIGDMEVA-SNRILRLIAGVVEHG 193 (215)
Q Consensus 128 P~a~~~v~~~l~~l~~~~G~~~~lR~-p~vTDnGN~IlD~~f~~~i~dp~~l-~~~L~~i~pGVVe~G 193 (215)
|..+..+.+.|.++ +.++. -.+|..-|+++.+.+.+ ..+..++ .+.|..+ |||..+-
T Consensus 80 ~~~~~~~~~~l~~~-------p~V~~~~~~tG~~dl~~~v~~~d-~~~l~~~~~~~l~~~-~gV~~~~ 138 (153)
T PRK11179 80 AKDYPSALAKLESL-------DEVVEAYYTTGHYSIFIKVMCRS-IDALQHVLINKIQTI-DEIQSTE 138 (153)
T ss_pred cccHHHHHHHHhCC-------CCEEEEEEcccCCCEEEEEEECC-HHHHHHHHHHHhhcC-CCeeeEE
Confidence 44566777777765 44554 56677779999999875 6666665 4678899 9998543
No 80
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=49.61 E-value=1.5e+02 Score=25.74 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhc---------C----------CCCCEEEecC---cHHHHHH
Q 036939 32 LKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQ---------G----------KLKNIVGIPT---SKTTHDQ 89 (215)
Q Consensus 32 ~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~---------~----------~l~~i~~V~t---S~~t~~~ 89 (215)
.+..-|...+..++.|.++.+||-.-....+++-+++... | .++++.+|.. ..+.-.+
T Consensus 53 ~~L~~A~~~i~~~~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~~~~Pdliiv~dp~~~~~AI~E 132 (204)
T PRK04020 53 ERIRIAAKFLSRYEPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKGYIEPDVVVVTDPRGDAQAVKE 132 (204)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhccCCCCEEEEECCcccHHHHHH
Confidence 4444455555556899999999999888888877766421 1 1344444432 2234478
Q ss_pred HHHCCCCeeecC
Q 036939 90 AVSLGIPLSDLD 101 (215)
Q Consensus 90 ~~~~Gi~v~~l~ 101 (215)
|.++|||++.+-
T Consensus 133 A~kl~IP~Iaiv 144 (204)
T PRK04020 133 AIEVGIPVVALC 144 (204)
T ss_pred HHHhCCCEEEEE
Confidence 999999988653
No 81
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=49.05 E-value=39 Score=27.76 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=40.3
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
.|-+=|.+++..|.+.+.+.. ...+.+.++++-|..|+..++++|++..
T Consensus 176 ~iiftS~~~v~~f~~~~~~~~-~~~~~~~~~~aig~~t~~~l~~~g~~~~ 224 (239)
T cd06578 176 AVLFTSPSTVRNLLELLGKEG-RALLKNVKIAAIGPRTAEALRELGLKVV 224 (239)
T ss_pred EEEEeCHHHHHHHHHHHhhhh-hhhhcCCeEEEECHHHHHHHHHcCCCce
Confidence 799999999999999987532 1224578899999999999999998754
No 82
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=48.95 E-value=55 Score=26.50 Aligned_cols=33 Identities=12% Similarity=-0.053 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhcCcC--CCEEEeCcChhHHHHHH
Q 036939 30 DELKKIAANKSVEFVKS--GMVVGLGTDSTATHAVD 63 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~--g~vIGLGsGSTv~~~i~ 63 (215)
+..|..+..-|-++.+- |-.| +.|++|..++-+
T Consensus 13 d~dK~~l~~~a~~l~~ll~Gf~l-~AT~gTa~~L~~ 47 (142)
T PRK05234 13 DHKKDDLVAWVKAHKDLLEQHEL-YATGTTGGLIQE 47 (142)
T ss_pred ccchHHHHHHHHHHHHHhcCCEE-EEeChHHHHHHh
Confidence 34466666666666666 7766 588888876543
No 83
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=48.04 E-value=47 Score=32.10 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHhcCcCCCEEEeCcChhH---HHHHHHHHhHHhcCCCCCEEEec---CcHHHH----HHHHHCCC
Q 036939 26 GLTQDELKKIAANKSVEFVKSGMVVGLGTDSTA---THAVDKIGELLHQGKLKNIVGIP---TSKTTH----DQAVSLGI 95 (215)
Q Consensus 26 m~~~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv---~~~i~~L~~~~~~~~l~~i~~V~---tS~~t~----~~~~~~Gi 95 (215)
|...+.+++.+.+-...-+-+--.--.|+|+++ ..+.+++++++++.+...+..+| |+.++. ++.++.||
T Consensus 286 v~PlD~LreLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~Gi 365 (431)
T TIGR01918 286 VVPVDVLRDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGI 365 (431)
T ss_pred eeeHHHHHHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCC
Confidence 334677777777666666666555566888776 46788888989988774444453 344443 56677899
Q ss_pred CeeecCCCCceeEEEecCCcccCC
Q 036939 96 PLSDLDSHPVIDLAIDGADEVDPG 119 (215)
Q Consensus 96 ~v~~l~~~~~iDl~iDGaDeVd~K 119 (215)
|++-+-.+-.|-+.+ |+.-|-+.
T Consensus 366 Pvv~~~~~~pis~tv-Ganrivp~ 388 (431)
T TIGR01918 366 PVVHMCTVIPIALTV-GANRIVPT 388 (431)
T ss_pred CEEEEeecccHhhhc-Cccceecc
Confidence 988665554444443 44444443
No 84
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=46.89 E-value=56 Score=26.95 Aligned_cols=53 Identities=13% Similarity=0.153 Sum_probs=42.8
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCC
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDS 102 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~ 102 (215)
+|.=+.|.|+-.+|+++.....+.. ..++|||+.......+...|...++-.+
T Consensus 70 Vvft~~~~tAD~~Ie~~v~~~~~~~-~~v~VVTSD~~iq~~~~~~GA~~iss~e 122 (166)
T PF05991_consen 70 VVFTKEGETADDYIERLVRELKNRP-RQVTVVTSDREIQRAARGRGAKRISSEE 122 (166)
T ss_pred EEECCCCCCHHHHHHHHHHHhccCC-CeEEEEeCCHHHHHHHhhCCCEEEcHHH
Confidence 6788899999999999988766522 3799999999988999999987775433
No 85
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=46.29 E-value=79 Score=23.66 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=13.1
Q ss_pred HHHHHHHHHhcCcCCCEEEeCcChhHHHH
Q 036939 33 KKIAANKSVEFVKSGMVVGLGTDSTATHA 61 (215)
Q Consensus 33 K~~aA~~A~~~V~~g~vIGLGsGSTv~~~ 61 (215)
|..+...|-.+.+-|-.|- .|..|..++
T Consensus 12 k~~~~~~~~~l~~~G~~l~-aT~gT~~~l 39 (110)
T cd01424 12 KPEAVEIAKRLAELGFKLV-ATEGTAKYL 39 (110)
T ss_pred HhHHHHHHHHHHHCCCEEE-EchHHHHHH
Confidence 3444444444445555552 455555444
No 86
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=44.47 E-value=47 Score=23.23 Aligned_cols=68 Identities=15% Similarity=0.271 Sum_probs=36.6
Q ss_pred CCeeEEEccccHHHHHHHHhcchhcCCCceeecc-eeEe--cCCCEEEeecCCCCCCCHH---HHHHHHccccCeEEee
Q 036939 120 LAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRT-CYEK--HNGNCIIDLYFKKDIGDME---VASNRILRLIAGVVEH 192 (215)
Q Consensus 120 ~plPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR~-p~vT--DnGN~IlD~~f~~~i~dp~---~l~~~L~~i~pGVVe~ 192 (215)
|+..++|.-.-..-++..+.+.+.+.|. .++. -..+ ++|...+++.+. +.|.+ .+-++|+++ |||.+.
T Consensus 5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~--nI~~i~~~~~~~~~~~~~~l~v~--V~d~~~L~~ii~~L~~i-~~V~~V 78 (80)
T PF13291_consen 5 FPVRLRIEAEDRPGLLADITSVISENGV--NIRSINARTNKDDGTARITLTVE--VKDLEHLNQIIRKLRQI-PGVISV 78 (80)
T ss_dssp EEEEEEEEEE--TTHHHHHHHHHHCSSS--EEEEEEEEE--ETTEEEEEEEEE--ESSHHHHHHHHHHHCTS-TTEEEE
T ss_pred EEEEEEEEEEcCCCHHHHHHHHHHHCCC--CeEEEEeEEeccCCEEEEEEEEE--ECCHHHHHHHHHHHHCC-CCeeEE
Confidence 4555666544344444444444433454 3333 2333 467667666654 44554 555688999 999863
No 87
>COG4670 Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid metabolism]
Probab=43.54 E-value=40 Score=33.17 Aligned_cols=49 Identities=20% Similarity=0.351 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCcCCCEEEeCcChh---HHHHHHHHHhHH-hcCCCCCEEEec
Q 036939 33 KKIAANKSVEFVKSGMVVGLGTDST---ATHAVDKIGELL-HQGKLKNIVGIP 81 (215)
Q Consensus 33 K~~aA~~A~~~V~~g~vIGLGsGST---v~~~i~~L~~~~-~~~~l~~i~~V~ 81 (215)
|..-|++|+.+|+||++|++++=+- -.+++++|.+|- +.|.=++++++.
T Consensus 4 K~isa~ea~~~I~DG~~vavsgf~~a~~Pe~ll~al~~r~~~tghPr~Lt~i~ 56 (527)
T COG4670 4 KVISAQEAAALIKDGATVAVSGFNGAGCPEELLKALGERYLETGHPRDLTFIS 56 (527)
T ss_pred ccccHHHHHhhCCCCCEEEeccccccCCHHHHHHHHHHHHHhhCCCCceEEEc
Confidence 6667899999999999999975432 356778887664 345445666653
No 88
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=43.46 E-value=50 Score=29.80 Aligned_cols=69 Identities=19% Similarity=0.144 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHH----------HHHHHHHCCCCee
Q 036939 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKT----------THDQAVSLGIPLS 98 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~----------t~~~~~~~Gi~v~ 98 (215)
.++|+++.+.+.+.+..---|=.|+|++...=+-+|+++.++-+...+-++|+.+. -...+++.++|++
T Consensus 56 ~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvi 134 (299)
T COG0329 56 LEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVI 134 (299)
T ss_pred HHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEE
Confidence 35677778888887764433555555554444455666666655667778877642 1234455577755
No 89
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=43.19 E-value=56 Score=28.50 Aligned_cols=55 Identities=18% Similarity=0.198 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcH
Q 036939 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSK 84 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~ 84 (215)
.++|+++.+.+++.+.....|-.|.|++...-..+++++.++-+...+.+.|+..
T Consensus 49 ~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 49 DEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 3667788888888887555444444443333233344444444454577777643
No 90
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=42.89 E-value=99 Score=23.60 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=42.7
Q ss_pred EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCCCCceeEEEecCCcccC----------C
Q 036939 50 VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDP----------G 119 (215)
Q Consensus 50 IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~~~~iDl~iDGaDeVd~----------K 119 (215)
+--|+|.|...+++.+.+..++.++ ++.+...|..-... ..+..|+.+-|. ++-. .
T Consensus 5 l~C~~GaSSs~la~km~~~a~~~gi-~~~i~a~~~~e~~~------------~~~~~Dvill~P-Qv~~~~~~i~~~~~~ 70 (99)
T cd05565 5 VLCAGGGTSGLLANALNKGAKERGV-PLEAAAGAYGSHYD------------MIPDYDLVILAP-QMASYYDELKKDTDR 70 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCC-cEEEEEeeHHHHHH------------hccCCCEEEEcC-hHHHHHHHHHHHhhh
Confidence 4559999999999999888887777 57666666554321 122345555553 2221 2
Q ss_pred CCeeEEEcc
Q 036939 120 LAVPVEVVP 128 (215)
Q Consensus 120 ~plPVEV~P 128 (215)
..+||++++
T Consensus 71 ~~ipv~~I~ 79 (99)
T cd05565 71 LGIKLVTTT 79 (99)
T ss_pred cCCCEEEeC
Confidence 368999997
No 91
>PF01808 AICARFT_IMPCHas: AICARFT/IMPCHase bienzyme; InterPro: IPR002695 This is a family of bifunctional enzymes catalysing the last two steps in de novo purine biosynthesis. The bifunctional enzyme is found in both prokaryotes and eukaryotes. The second last step is catalysed by 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 2.1.2.3 from EC (AICARFT), this enzyme catalyses the formylation of AICAR with 10-formyl-tetrahydrofolate to yield FAICAR and tetrahydrofolate []. The last step is catalysed by IMP (Inosine monophosphate) cyclohydrolase 3.5.4.10 from EC (IMPCHase), cyclizing FAICAR (5-formylaminoimidazole-4-carboxamide ribonucleotide) to IMP [].; GO: 0003937 IMP cyclohydrolase activity, 0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity, 0006164 purine nucleotide biosynthetic process; PDB: 1ZCZ_A 1PL0_D 1PKX_C 1P4R_B 1G8M_B 2IU3_B 2B1I_A 2B1G_D 1OZ0_B 1M9N_B ....
Probab=42.85 E-value=29 Score=32.12 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=25.3
Q ss_pred HHHHHHHHhcC--------cCCCEEEeCcChhHHHHHHHHH
Q 036939 34 KIAANKSVEFV--------KSGMVVGLGTDSTATHAVDKIG 66 (215)
Q Consensus 34 ~~aA~~A~~~V--------~~g~vIGLGsGSTv~~~i~~L~ 66 (215)
..-|.++++|+ ++|++||+|+|-|..--.-+++
T Consensus 271 L~FAwkv~k~vKSNAIv~ak~~~tvGIGaGQ~sRVda~~iA 311 (315)
T PF01808_consen 271 LLFAWKVVKHVKSNAIVLAKDGQTVGIGAGQMSRVDAARIA 311 (315)
T ss_dssp HHHHHHHHHCSSSSEEEEEETTEEEEEEESSSSHHHHHHHH
T ss_pred HHHHHHHHhhcccceEEEEeCCeEEEeCCCCcchHHHHHHH
Confidence 45689999988 5788999999998765544443
No 92
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=42.84 E-value=91 Score=29.95 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=49.2
Q ss_pred CcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHH-HHHHHCCCCeeecCCC----CceeEEEecCCc
Q 036939 44 VKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH-DQAVSLGIPLSDLDSH----PVIDLAIDGADE 115 (215)
Q Consensus 44 V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~-~~~~~~Gi~v~~l~~~----~~iDl~iDGaDe 115 (215)
+++-.++-+|.|-+....+++|.++ +.+.|+++-=+..-+ .+|.++|...+.+++. ...|+.|=+.-.
T Consensus 176 L~~~~vlvIGAGem~~lva~~L~~~----g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa 248 (414)
T COG0373 176 LKDKKVLVIGAGEMGELVAKHLAEK----GVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSA 248 (414)
T ss_pred cccCeEEEEcccHHHHHHHHHHHhC----CCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCC
Confidence 4566799999999999999999753 344687777666666 5678889888777653 356666665443
No 93
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=42.69 E-value=93 Score=23.29 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=42.7
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCCCCceeEEEecCCcccC---------C
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDP---------G 119 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~~~~iDl~iDGaDeVd~---------K 119 (215)
.+--|+|-+...+++.+.+.+++.++ ++.+...|..-.... ....|+.+-+..--.. +
T Consensus 7 Ll~C~~G~sSS~l~~k~~~~~~~~gi-~~~v~a~~~~~~~~~------------~~~~Dvill~pqi~~~~~~i~~~~~~ 73 (95)
T TIGR00853 7 LLLCAAGMSTSLLVNKMNKAAEEYGV-PVKIAAGSYGAAGEK------------LDDADVVLLAPQVAYMLPDLKKETDK 73 (95)
T ss_pred EEECCCchhHHHHHHHHHHHHHHCCC-cEEEEEecHHHHHhh------------cCCCCEEEECchHHHHHHHHHHHhhh
Confidence 46778888888899999887777767 466666666543211 1234666666543221 2
Q ss_pred CCeeEEEcc
Q 036939 120 LAVPVEVVP 128 (215)
Q Consensus 120 ~plPVEV~P 128 (215)
..+||+++|
T Consensus 74 ~~ipv~~I~ 82 (95)
T TIGR00853 74 KGIPVEVIN 82 (95)
T ss_pred cCCCEEEeC
Confidence 357888876
No 94
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=42.39 E-value=65 Score=27.87 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHhcCc-CC-CEEEeCcChhHHHHHHHHHhHHhcCCC
Q 036939 28 TQDELKKIAANKSVEFVK-SG-MVVGLGTDSTATHAVDKIGELLHQGKL 74 (215)
Q Consensus 28 ~~~~~K~~aA~~A~~~V~-~g-~vIGLGsGSTv~~~i~~L~~~~~~~~l 74 (215)
+.+++-+.+|.+-.+.++ .+ -+|+|.+|||-..+-+.|++..+++.+
T Consensus 8 ~~~~~~~~~a~~i~~~i~~~~~~~l~lsgGstP~~~y~~L~~~~~~~~l 56 (232)
T PRK09762 8 NYTALSERASEYLLAVIRSKPDAVICLATGATPLLTYHYLVEKIHQQQV 56 (232)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHHHHHhhcCC
Confidence 445555556655555442 34 489999999999999999875443333
No 95
>KOG2555 consensus AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase [Nucleotide transport and metabolism]
Probab=42.32 E-value=18 Score=35.22 Aligned_cols=26 Identities=38% Similarity=0.686 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcC--------cCCCEEEeCcChhH
Q 036939 33 KKIAANKSVEFV--------KSGMVVGLGTDSTA 58 (215)
Q Consensus 33 K~~aA~~A~~~V--------~~g~vIGLGsGSTv 58 (215)
-...|.-|++|. ++||+||||+|--.
T Consensus 413 Dl~vAt~a~KytqSNsvcyAkng~vvGlGaGQqs 446 (588)
T KOG2555|consen 413 DLIVATIALKYTQSNSVCYAKNGMVVGLGAGQQS 446 (588)
T ss_pred HHHHHHHhhhhhccccEEEEeCCEEEeecCCCcc
Confidence 445677888876 68999999999754
No 96
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=42.01 E-value=1.1e+02 Score=27.79 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=28.6
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHC
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL 93 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~ 93 (215)
+...+||+|+||..- .++.++-.. ++ .+.+|||.. |..++...
T Consensus 77 ~~d~IIaiGGGs~iD-~aK~ia~~~---~~-p~i~IPTta-tgse~t~~ 119 (337)
T cd08177 77 GADGIVAIGGGSTID-LAKAIALRT---GL-PIIAIPTTL-SGSEMTPI 119 (337)
T ss_pred CCCEEEEeCCcHHHH-HHHHHHHHh---cC-CEEEEcCCc-hhhhhcCe
Confidence 445699999999664 446665432 24 588999987 66655433
No 97
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=40.80 E-value=2.2e+02 Score=25.06 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=33.0
Q ss_pred cCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 43 FVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 43 ~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
.+++|..|-+.+++.+-+++-.+++. .| .+.+.++.+|.+-...++++|..
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~--~G-~~~v~~~~~~~~~~~~~~~~g~~ 209 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKA--FG-ATKVVVTDIDPSRLEFAKELGAT 209 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cC-CcEEEEECCCHHHHHHHHHcCCc
Confidence 56788877776556677777777653 22 21266666666666777777764
No 98
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=40.34 E-value=68 Score=28.13 Aligned_cols=55 Identities=18% Similarity=0.116 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcH
Q 036939 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSK 84 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~ 84 (215)
.++|+++.+.+++.+.....|-.|.|++...-+.++++..++-+...+.+.|+..
T Consensus 52 ~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 52 DEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 4667777888888887655555566554333334455544544454566666544
No 99
>PF13245 AAA_19: Part of AAA domain
Probab=39.90 E-value=1.3e+02 Score=21.47 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=26.6
Q ss_pred cCCCEE---EeCcChhH--HHHHHHHHhHHhcCCCCCEEEecCcHHHHHHH-HHC
Q 036939 45 KSGMVV---GLGTDSTA--THAVDKIGELLHQGKLKNIVGIPTSKTTHDQA-VSL 93 (215)
Q Consensus 45 ~~g~vI---GLGsGSTv--~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~-~~~ 93 (215)
+++..+ +=|||-|. ...+.++.+..... -+.+.+++.+...+..+ +.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 455555 56899874 33333333211111 23688898888887555 444
No 100
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=39.82 E-value=2.3e+02 Score=23.97 Aligned_cols=49 Identities=14% Similarity=0.279 Sum_probs=29.5
Q ss_pred cCcCCCEEE-eCcChhHHHHHHHHHhHHhcCCCCC-EEEecCcHHHHHHHHHCCCC
Q 036939 43 FVKSGMVVG-LGTDSTATHAVDKIGELLHQGKLKN-IVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 43 ~V~~g~vIG-LGsGSTv~~~i~~L~~~~~~~~l~~-i~~V~tS~~t~~~~~~~Gi~ 96 (215)
.+++|..|- .|+|+....+++ +++. .+. + +.+++++.+...+++++|+.
T Consensus 126 ~~~~~~~vlI~g~g~vg~~~~~-la~~---~g~-~~v~~~~~~~~~~~~~~~~g~~ 176 (312)
T cd08269 126 WIRAGKTVAVIGAGFIGLLFLQ-LAAA---AGA-RRVIAIDRRPARLALARELGAT 176 (312)
T ss_pred CCCCCCEEEEECCCHHHHHHHH-HHHH---cCC-cEEEEECCCHHHHHHHHHhCCc
Confidence 456676444 477765555554 4432 123 4 77777776666788888875
No 101
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=39.39 E-value=32 Score=23.61 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=26.4
Q ss_pred EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHC
Q 036939 50 VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL 93 (215)
Q Consensus 50 IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~ 93 (215)
+|-|+|.++..++++ +.. +++++-.|....+.+++.
T Consensus 3 iG~G~G~~~~~l~~~-------~~~-~v~~~D~~~~~~~~~~~~ 38 (95)
T PF08241_consen 3 IGCGTGRFAAALAKR-------GGA-SVTGIDISEEMLEQARKR 38 (95)
T ss_dssp ET-TTSHHHHHHHHT-------TTC-EEEEEES-HHHHHHHHHH
T ss_pred ecCcCCHHHHHHHhc-------cCC-EEEEEeCCHHHHHHHHhc
Confidence 788999999887775 112 699999999988888765
No 102
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=39.06 E-value=2e+02 Score=25.22 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=32.7
Q ss_pred hcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 42 EFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 42 ~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
...++|..|.+.+++.+.+++-.|++.. | .+.+.++++|.+...+++++|..
T Consensus 159 ~~~~~g~~vlV~g~g~vg~~~~~la~~~--G-~~~v~~~~~~~~~~~~~~~~g~~ 210 (341)
T cd05281 159 AGDVSGKSVLITGCGPIGLMAIAVAKAA--G-ASLVIASDPNPYRLELAKKMGAD 210 (341)
T ss_pred hcCCCCCEEEEECCCHHHHHHHHHHHHc--C-CcEEEEECCCHHHHHHHHHhCcc
Confidence 3456788766655556666666665432 2 32365666777777888888875
No 103
>COG0138 PurH AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) [Nucleotide transport and metabolism]
Probab=38.48 E-value=49 Score=32.55 Aligned_cols=66 Identities=24% Similarity=0.232 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcC--------cCCCEEEeCcChhHHHHHHHHHhHHhc-CCCCCE-EEecCcH------HHHHHHHHCCC
Q 036939 32 LKKIAANKSVEFV--------KSGMVVGLGTDSTATHAVDKIGELLHQ-GKLKNI-VGIPTSK------TTHDQAVSLGI 95 (215)
Q Consensus 32 ~K~~aA~~A~~~V--------~~g~vIGLGsGSTv~~~i~~L~~~~~~-~~l~~i-~~V~tS~------~t~~~~~~~Gi 95 (215)
.-...|.++++|+ ++||+||||.|-+..-=.-+|+..... ..+ ++ -+|-.|. ++-..+++.||
T Consensus 401 ~dl~Fawkv~k~vKSNaIv~akd~~TvGiGaGQ~sRV~sariA~~kA~~~~~-~~~Gav~ASDAFFPF~D~i~~aA~aGi 479 (515)
T COG0138 401 EDLLFAWKVVKHVKSNAIVYAKDGQTVGIGAGQMSRVDSARIAAEKAGDAGL-RAHGAVLASDAFFPFPDGIDAAAKAGI 479 (515)
T ss_pred HHHHHHHHHHhHhccceEEEEcCCeEEEecCCccchHHHHHHHHHHHHHhhh-hccCcEEeecccCCCcchHHHHHHcCC
Confidence 3456789999988 588999999998876555566432111 111 11 1333332 45566788888
Q ss_pred Cee
Q 036939 96 PLS 98 (215)
Q Consensus 96 ~v~ 98 (215)
+-+
T Consensus 480 ~aI 482 (515)
T COG0138 480 KAI 482 (515)
T ss_pred eEE
Confidence 844
No 104
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=38.25 E-value=83 Score=27.25 Aligned_cols=43 Identities=14% Similarity=0.290 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHhcCc-CC-CEEEeCcChhHHHHHHHHHhHHh
Q 036939 28 TQDELKKIAANKSVEFVK-SG-MVVGLGTDSTATHAVDKIGELLH 70 (215)
Q Consensus 28 ~~~~~K~~aA~~A~~~V~-~g-~vIGLGsGSTv~~~i~~L~~~~~ 70 (215)
+.+++-+.+|+.-++.++ .+ -+|+|-+|||-..+-+.|++..+
T Consensus 8 ~~~e~~~~~a~~i~~~i~~~~~~~l~lsgG~tp~~~y~~L~~~~~ 52 (239)
T PRK12358 8 DYEEMSRVAAHHLLGYMSKTKRVNLAITAGSTPKGMYEYLITLVK 52 (239)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHh
Confidence 456666667777777663 33 48999999999999999987643
No 105
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=38.10 E-value=2e+02 Score=22.77 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=33.2
Q ss_pred HHHHHHhcCcCCCEEEeCcCh-hHHHHHHHHHhHHhcCCCCCEEEecC---cHHHHHHHHHCCCC
Q 036939 36 AANKSVEFVKSGMVVGLGTDS-TATHAVDKIGELLHQGKLKNIVGIPT---SKTTHDQAVSLGIP 96 (215)
Q Consensus 36 aA~~A~~~V~~g~vIGLGsGS-Tv~~~i~~L~~~~~~~~l~~i~~V~t---S~~t~~~~~~~Gi~ 96 (215)
++++|.+. +..+|||.+=. |....++++.+++++.++.++.++.- ..+....++++|+.
T Consensus 45 ~v~aa~e~--~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd 107 (132)
T TIGR00640 45 IARQAVEA--DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVA 107 (132)
T ss_pred HHHHHHHc--CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCC
Confidence 44555544 66788887632 23334566666666544444544433 34445667778875
No 106
>COG0363 NagB 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]
Probab=37.98 E-value=60 Score=28.55 Aligned_cols=43 Identities=23% Similarity=0.259 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHhcCcCC------CEEEeCcChhHHHHHHHHHhHHh
Q 036939 28 TQDELKKIAANKSVEFVKSG------MVVGLGTDSTATHAVDKIGELLH 70 (215)
Q Consensus 28 ~~~~~K~~aA~~A~~~V~~g------~vIGLGsGSTv~~~i~~L~~~~~ 70 (215)
+.+++-+.+|+.-.+.++.+ -+|||-+|||=..+-+.|.++.+
T Consensus 8 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~l~LsgGsTP~~~ye~L~~~~~ 56 (238)
T COG0363 8 DAEELAKAAAEIIADKLQAAKAERGRAVLALSGGSTPLALYEALVKLPQ 56 (238)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhccCcEEEEECCCCCHHHHHHHHHhhhc
Confidence 34555566666666666555 49999999999999999987653
No 107
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.81 E-value=1.2e+02 Score=20.55 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=34.7
Q ss_pred cccHHHHHHHHhcchhcCCCceeecceeEecCCCEEEeecC--CCCCC-CHHHHHHHHccccCeEEeee
Q 036939 128 PVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYF--KKDIG-DMEVASNRILRLIAGVVEHG 193 (215)
Q Consensus 128 P~a~~~v~~~l~~l~~~~G~~~~lR~p~vTDnGN~IlD~~f--~~~i~-dp~~l~~~L~~i~pGVVe~G 193 (215)
|..+..+.+.|.+. |.+...=..-.+.+|..-+.+.+ .+ .. ...++-++|+++ |||.+.-
T Consensus 11 ~g~l~~I~~~la~~----~inI~~i~~~~~~~~~~~i~~~v~v~~-~~~~l~~l~~~L~~i-~~V~~v~ 73 (76)
T cd04888 11 PGVLSKVLNTIAQV----RGNVLTINQNIPIHGRANVTISIDTST-MNGDIDELLEELREI-DGVEKVE 73 (76)
T ss_pred CchHHHHHHHHHHc----CCCEEEEEeCCCCCCeEEEEEEEEcCc-hHHHHHHHHHHHhcC-CCeEEEE
Confidence 55567777777664 66543100111134443444333 33 44 677888999999 9998754
No 108
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=37.73 E-value=55 Score=28.31 Aligned_cols=53 Identities=15% Similarity=0.017 Sum_probs=42.3
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
+.-+.|-+=|++++..|.+.+.+.... .+.+.++++-+..|++.++++|++..
T Consensus 174 ~~~d~v~ftS~~~v~~~~~~~~~~~~~-~~~~~~v~~IG~~Ta~~l~~~G~~~~ 226 (248)
T COG1587 174 GEVDAVVFTSSSAVRALLALAPESGIE-FLERKRVASIGPRTAETLKELGITVD 226 (248)
T ss_pred CCCCEEEEeCHHHHHHHHHHccccchh-HhhCceEEEecHHHHHHHHHcCCcce
Confidence 455789999999999999988654321 12357899999999999999999854
No 109
>PF08679 DsrD: Dissimilatory sulfite reductase D (DsrD); InterPro: IPR014793 The structure of the dissimilatory sulphite reductase D (DsrD) protein has shown it to contain a winged-helix motif similar to those found in DNA binding proteins []. The structure suggests a possible role for DsrD in transcription or translation of genes, which catalyse dissimilatory sulphite reduction. ; PDB: 1WQ2_B 1UCR_B.
Probab=37.68 E-value=5.6 Score=28.79 Aligned_cols=28 Identities=29% Similarity=0.249 Sum_probs=21.3
Q ss_pred HHHHHHHHH-hcCcCCCEEEeCcChhHHH
Q 036939 33 KKIAANKSV-EFVKSGMVVGLGTDSTATH 60 (215)
Q Consensus 33 K~~aA~~A~-~~V~~g~vIGLGsGSTv~~ 60 (215)
|.+.++.++ ++|.+|....-.||||+.|
T Consensus 33 k~R~vKKi~~~LV~Eg~l~yWSSGSTTmY 61 (67)
T PF08679_consen 33 KPREVKKIVNELVNEGKLEYWSSGSTTMY 61 (67)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHhhCeEEEEcCCCcEEe
Confidence 444555555 5999999999999999765
No 110
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=37.53 E-value=1.2e+02 Score=22.93 Aligned_cols=30 Identities=13% Similarity=0.248 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCcCCCEEEeCcChhHHHHH
Q 036939 32 LKKIAANKSVEFVKSGMVVGLGTDSTATHAV 62 (215)
Q Consensus 32 ~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i 62 (215)
.|..+..-|-.+.+.|-.| ..|+.|..++-
T Consensus 10 ~K~~~~~~a~~l~~~G~~i-~AT~gTa~~L~ 39 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL-FATGGTSRVLA 39 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE-EECcHHHHHHH
Confidence 4555555566666777766 47777776653
No 111
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=36.91 E-value=74 Score=28.80 Aligned_cols=98 Identities=18% Similarity=0.157 Sum_probs=64.5
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHC-CCCeeecCCCCceeEEEecCCcccCC--C-----
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL-GIPLSDLDSHPVIDLAIDGADEVDPG--L----- 120 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~-Gi~v~~l~~~~~iDl~iDGaDeVd~K--~----- 120 (215)
=||-|.|.|+.-+++.-. +.+| .+-+...|.+...+.++. +..-..... .-.|++.++-.+--.. +
T Consensus 77 EvGCGvGNtvfPll~~~~----n~~l-~v~acDfsp~Ai~~vk~~~~~~e~~~~a-fv~Dlt~~~~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 77 EVGCGVGNTVFPLLKTSP----NNRL-KVYACDFSPRAIELVKKSSGYDESRVEA-FVWDLTSPSLKEPPEEGSVDIITL 150 (264)
T ss_pred eeccCCCcccchhhhcCC----CCCe-EEEEcCCChHHHHHHHhccccchhhhcc-cceeccchhccCCCCcCccceEEE
Confidence 389999999998887643 2336 388889999998888776 433322211 1466666662221111 1
Q ss_pred -CeeEEEccccHHHHHHHHhcchhcCCCceeecc
Q 036939 121 -AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRT 153 (215)
Q Consensus 121 -plPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR~ 153 (215)
-+=-+|.|..+..+++.|.+++. .|+..-+|-
T Consensus 151 IFvLSAi~pek~~~a~~nl~~llK-PGG~llfrD 183 (264)
T KOG2361|consen 151 IFVLSAIHPEKMQSVIKNLRTLLK-PGGSLLFRD 183 (264)
T ss_pred EEEEeccChHHHHHHHHHHHHHhC-CCcEEEEee
Confidence 22335679999999999998755 777777773
No 112
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=36.69 E-value=21 Score=33.20 Aligned_cols=90 Identities=24% Similarity=0.233 Sum_probs=51.6
Q ss_pred CCEEEe--CcChhHHHHHHHHHhHHhcCCCCCEEE--ecCcHH-HHHHHHHC-C----CCee--ecCCCCceeEEEecCC
Q 036939 47 GMVVGL--GTDSTATHAVDKIGELLHQGKLKNIVG--IPTSKT-THDQAVSL-G----IPLS--DLDSHPVIDLAIDGAD 114 (215)
Q Consensus 47 g~vIGL--GsGSTv~~~i~~L~~~~~~~~l~~i~~--V~tS~~-t~~~~~~~-G----i~v~--~l~~~~~iDl~iDGaD 114 (215)
++.|-+ +||=-..++++.|-+| |- .+++ =.++.. -...++++ | +.+. +|.+.+.+|-+|+|||
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~r---GY--~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcd 80 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSR---GY--TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCD 80 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhC---CC--EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCC
Confidence 444433 4555667788877543 31 1322 222221 11245555 3 3333 6777789999999999
Q ss_pred cccC-CCCeeE-------EEccccHHHHHHHHhcc
Q 036939 115 EVDP-GLAVPV-------EVVPVCWKFTANRFPDL 141 (215)
Q Consensus 115 eVd~-K~plPV-------EV~P~a~~~v~~~l~~l 141 (215)
.|=. ..|++. |.+-.+++-+++-|+..
T Consensus 81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac 115 (327)
T KOG1502|consen 81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEAC 115 (327)
T ss_pred EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHH
Confidence 9843 233333 56666777777777764
No 113
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=36.62 E-value=86 Score=27.75 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCcCCCE--EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcH
Q 036939 30 DELKKIAANKSVEFVKSGMV--VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSK 84 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~v--IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~ 84 (215)
.++|+.+.+.+++.+..... +|+|+.||- .. -++++..++-+...+.++|+..
T Consensus 53 ~~Er~~~~~~~~~~~~~~~~viagv~~~~~~-~a-i~~a~~a~~~Gad~v~~~~P~y 107 (288)
T cd00954 53 VEERKQIAEIVAEAAKGKVTLIAHVGSLNLK-ES-QELAKHAEELGYDAISAITPFY 107 (288)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEeccCCCCHH-HH-HHHHHHHHHcCCCEEEEeCCCC
Confidence 56788888888888776554 455554443 23 3334333443444565666543
No 114
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=36.41 E-value=1e+02 Score=27.86 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=34.9
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc------------HHHHHHHHHCCCCeeecCCC
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS------------KTTHDQAVSLGIPLSDLDSH 103 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS------------~~t~~~~~~~Gi~v~~l~~~ 103 (215)
++-+||+......+++|.+. + ..-+.+||.. ...+.+|+++||++...+..
T Consensus 3 Ivf~Gs~~~a~~~L~~L~~~---~-~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~ 65 (313)
T TIGR00460 3 IVFFGTPTFSLPVLEELRED---N-FEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQ 65 (313)
T ss_pred EEEECCCHHHHHHHHHHHhC---C-CcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCC
Confidence 68899999999888988542 2 2123345432 23788999999998755443
No 115
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=36.22 E-value=2.5e+02 Score=24.52 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=30.9
Q ss_pred hcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 42 EFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 42 ~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
.+.++|+.|.+.+...+..++-.+++. .| .+.+.++++|.+....++++|..
T Consensus 159 ~~~~~g~~vlV~~~g~vg~~~~~la~~--~G-~~~v~~~~~~~~~~~~~~~lg~~ 210 (341)
T PRK05396 159 SFDLVGEDVLITGAGPIGIMAAAVAKH--VG-ARHVVITDVNEYRLELARKMGAT 210 (341)
T ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHH--cC-CCEEEEEcCCHHHHHHHHHhCCc
Confidence 345677765554333444444445442 12 32366777788888888888875
No 116
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=35.73 E-value=92 Score=24.56 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=34.5
Q ss_pred CEEEeCc--ChhHHHHHHHHHhHHhcCCC--CCEEEecCc------HHHHHHHHHCCCCeeec
Q 036939 48 MVVGLGT--DSTATHAVDKIGELLHQGKL--KNIVGIPTS------KTTHDQAVSLGIPLSDL 100 (215)
Q Consensus 48 ~vIGLGs--GSTv~~~i~~L~~~~~~~~l--~~i~~V~tS------~~t~~~~~~~Gi~v~~l 100 (215)
-++|+|. |.+...+.+.+.+.+++.++ ..|.++.|- .....+++++|+|+..+
T Consensus 4 ~~vGIGcr~~~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K~~E~~L~~~A~~lg~pl~~~ 66 (126)
T PRK07027 4 VALGIGCRRGVPAEQIEAAIRAALAQRPLASADVRVVATLDLKADEAGLLALCARHGWPLRAF 66 (126)
T ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcCCCHHHhheeEehhhhcCCHHHHHHHHHhCCCeEEe
Confidence 4678875 66777777777666665555 346666653 34446778889887755
No 117
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=35.29 E-value=2.4e+02 Score=24.72 Aligned_cols=52 Identities=12% Similarity=0.021 Sum_probs=31.3
Q ss_pred hcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 42 EFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 42 ~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
..+++|..|-+.++..+.+++-.+++. .| .+.+.++.+|.+...+++++|..
T Consensus 157 ~~~~~g~~vlI~~~g~vg~~a~~la~~--~G-~~~v~~~~~~~~~~~~~~~~g~~ 208 (340)
T TIGR00692 157 AGPISGKSVLVTGAGPIGLMAIAVAKA--SG-AYPVIVSDPNEYRLELAKKMGAT 208 (340)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHH--cC-CcEEEEECCCHHHHHHHHHhCCc
Confidence 346678766664444555555555542 12 32366666777777888888875
No 118
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=35.08 E-value=79 Score=28.09 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc
Q 036939 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS 83 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS 83 (215)
.++|+++.+.+++.+.....|-.|.|++...-+-++++..++-+...+.++|+.
T Consensus 56 ~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~ 109 (293)
T PRK04147 56 TEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPF 109 (293)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 366777888888888755544445554333333344444444445567677664
No 119
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=34.94 E-value=1.1e+02 Score=26.42 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=36.3
Q ss_pred HhcCcCCCE---EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeec
Q 036939 41 VEFVKSGMV---VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDL 100 (215)
Q Consensus 41 ~~~V~~g~v---IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l 100 (215)
+++|++|.. +|-|.|+-..++.++ + +. ...+|=-+.+--..|.+.|++|+..
T Consensus 8 ~~~I~pgsrVLDLGCGdG~LL~~L~~~-----k--~v-~g~GvEid~~~v~~cv~rGv~Viq~ 62 (193)
T PF07021_consen 8 AEWIEPGSRVLDLGCGDGELLAYLKDE-----K--QV-DGYGVEIDPDNVAACVARGVSVIQG 62 (193)
T ss_pred HHHcCCCCEEEecCCCchHHHHHHHHh-----c--CC-eEEEEecCHHHHHHHHHcCCCEEEC
Confidence 458999974 466666655444332 1 12 4678888988889999999999843
No 120
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=34.89 E-value=90 Score=27.55 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc
Q 036939 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS 83 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS 83 (215)
.++|+++.+.+++.++....|-.|.|++...-+-+++++.++-+...+.++|+.
T Consensus 53 ~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 53 HEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVTPY 106 (292)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 466777888888888654434444444222333334444444445456666765
No 121
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.82 E-value=19 Score=25.22 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=27.3
Q ss_pred HHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHh
Q 036939 38 NKSVEFVKSGMVVGLGTDSTATHAVDKIGELLH 70 (215)
Q Consensus 38 ~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~ 70 (215)
++|++.|+.=|.=|+.||..+..++++|.++-+
T Consensus 14 Q~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk 46 (60)
T COG3140 14 QKAVERIQELMAEGMSSGEAIALVAQELRENHK 46 (60)
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHhc
Confidence 567777777788889999999999999987543
No 122
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=34.62 E-value=88 Score=23.70 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCcCCCEEEeCcChhHHHH
Q 036939 33 KKIAANKSVEFVKSGMVVGLGTDSTATHA 61 (215)
Q Consensus 33 K~~aA~~A~~~V~~g~vIGLGsGSTv~~~ 61 (215)
|......|-.+.+-|-.| ..|+.|+.++
T Consensus 12 k~~~~~~a~~l~~~G~~i-~aT~gTa~~L 39 (116)
T cd01423 12 KPELLPTAQKLSKLGYKL-YATEGTADFL 39 (116)
T ss_pred chhHHHHHHHHHHCCCEE-EEccHHHHHH
Confidence 333444444445555555 2555555444
No 123
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=34.34 E-value=72 Score=28.79 Aligned_cols=52 Identities=19% Similarity=-0.003 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhcCcCCCE--EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc
Q 036939 30 DELKKIAANKSVEFVKSGMV--VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS 83 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~v--IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS 83 (215)
.++|+.+.+.+++.+..... +|+|+-+| ...++ ++++.++-+...+-++|+.
T Consensus 60 ~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t-~~ai~-~a~~A~~~Gad~vlv~~P~ 113 (309)
T cd00952 60 WEEKQAFVATVVETVAGRVPVFVGATTLNT-RDTIA-RTRALLDLGADGTMLGRPM 113 (309)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEeccCCH-HHHHH-HHHHHHHhCCCEEEECCCc
Confidence 46788888889998875564 44444444 33333 3333344345456666664
No 124
>COG3062 NapD Uncharacterized protein involved in formation of periplasmic nitrate reductase [Inorganic ion transport and metabolism]
Probab=34.18 E-value=1.5e+02 Score=22.92 Aligned_cols=67 Identities=15% Similarity=0.250 Sum_probs=45.9
Q ss_pred eeEEEccccHHHHHHHHhcchhcCCCceeecceeEecC-CCEEEeecCCCCCCCHHHHHHHHccccCeEEeeeecccc
Q 036939 122 VPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHN-GNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDM 198 (215)
Q Consensus 122 lPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR~p~vTDn-GN~IlD~~f~~~i~dp~~l~~~L~~i~pGVVe~GLF~~~ 198 (215)
+-|-..|.-+..+...|..+ .|++. +..|+ |.+|+=+.-.+ -...-+--..++++ |||+...|-+.-
T Consensus 11 lVv~~~pe~l~av~~~L~~i---p~~EV-----~~~d~~GKlVVVie~~~-~~~l~~tie~i~nl-~gVlav~lVyhq 78 (94)
T COG3062 11 LVVQAKPERLSAVKTALLAI---PGCEV-----YGEDAEGKLVVVIEAED-SETLLETIESIRNL-PGVLAVSLVYHQ 78 (94)
T ss_pred EeeecCHHHHHHHHHHHhcC---CCcEe-----eccCCCceEEEEEEcCc-hHHHHHHHHHHhcC-CceeEEEEEEEE
Confidence 44555677788888888877 36653 56677 89888665443 33344444578899 999998887643
No 125
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=34.17 E-value=65 Score=26.17 Aligned_cols=59 Identities=12% Similarity=0.219 Sum_probs=39.7
Q ss_pred cccHHHHHHHHhcchhcCCCceeecc-eeEecCCCEEEeecCCCCCCCHHHHH-HHHccccCeEEeeeec
Q 036939 128 PVCWKFTANRFPDLFKDCGCVAKLRT-CYEKHNGNCIIDLYFKKDIGDMEVAS-NRILRLIAGVVEHGMF 195 (215)
Q Consensus 128 P~a~~~v~~~l~~l~~~~G~~~~lR~-p~vTDnGN~IlD~~f~~~i~dp~~l~-~~L~~i~pGVVe~GLF 195 (215)
|..+..+.+.|.++ +.++. ..+|-..++++-+.+.+ ..+.+++- +.|..+ |||..+--+
T Consensus 87 ~~~~~~~~~~l~~~-------p~V~~~~~vtG~~d~~l~v~~~~-~~~l~~~l~~~l~~~-~gV~~~~t~ 147 (164)
T PRK11169 87 PDVFEQFNAAVQKL-------EEIQECHLVSGDFDYLLKTRVPD-MSAYRKLLGETLLRL-PGVNDTRTY 147 (164)
T ss_pred hHHHHHHHHHHhcC-------cceeeeeeecCCCCEEEEEEECC-HHHHHHHHHHHhhcC-CCeeeEEEE
Confidence 33455666666664 34444 46777789999999875 56666643 578889 999865433
No 126
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=33.90 E-value=1.5e+02 Score=26.82 Aligned_cols=54 Identities=9% Similarity=0.193 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHhc-CcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcH
Q 036939 28 TQDELKKIAANKSVEF-VKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSK 84 (215)
Q Consensus 28 ~~~~~K~~aA~~A~~~-V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~ 84 (215)
+.+..++.+....-.- =++..+||+|+||+.-. ++.++..... ++ .+..|||+.
T Consensus 63 ~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~-aK~iA~~~~~-~~-p~i~VPTT~ 117 (344)
T TIGR01357 63 SLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDL-AGFVAATYMR-GI-RFIQVPTTL 117 (344)
T ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHH-HHHHHHHHcc-CC-CEEEecCch
Confidence 3444544433222222 24578999999997643 3555432222 34 588999975
No 127
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=33.58 E-value=1.6e+02 Score=26.69 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=41.0
Q ss_pred HHHHHHHhcCcCC-CEEEeCcChh---------------HHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 35 IAANKSVEFVKSG-MVVGLGTDST---------------ATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 35 ~aA~~A~~~V~~g-~vIGLGsGST---------------v~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
.+.++|.+++++| .+|=||+-|| +.-+++.|.+.. .. .+-+=|...++++.|-+.|..++
T Consensus 39 ~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~---~~-~ISIDT~~~~va~~AL~~GadiI 114 (282)
T PRK11613 39 DAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF---EV-WISVDTSKPEVIRESAKAGAHII 114 (282)
T ss_pred HHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC---CC-eEEEECCCHHHHHHHHHcCCCEE
Confidence 4567788899998 5999996555 444455553211 23 25666777788888888898876
No 128
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=33.35 E-value=53 Score=23.97 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=19.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcC
Q 036939 21 SPTSVGLTQDELKKIAANKSVEFV 44 (215)
Q Consensus 21 ~~~~~m~~~~~~K~~aA~~A~~~V 44 (215)
.++..+.+.+++|+.||+.|+..+
T Consensus 56 ~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 56 GPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred cCCCcCccHHHHHHHHHHHHHHhc
Confidence 355778889999999999998754
No 129
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=33.31 E-value=41 Score=31.03 Aligned_cols=85 Identities=22% Similarity=0.207 Sum_probs=51.5
Q ss_pred cCcCCCEE---EeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcH-HHHHHHHHCCCCeeecCCCCceeEEEecCCcccC
Q 036939 43 FVKSGMVV---GLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSK-TTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDP 118 (215)
Q Consensus 43 ~V~~g~vI---GLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~-~t~~~~~~~Gi~v~~l~~~~~iDl~iDGaDeVd~ 118 (215)
-+++|.+| |-||||...++++.++- .|.+-..-+=-+=. +..+.-+++|+. +.-.+-+=|++=+|.+.=+.
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~p---tGhl~tfefH~~Ra~ka~eeFr~hgi~--~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAP---TGHLYTFEFHETRAEKALEEFREHGIG--DNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCc---CcceEEEEecHHHHHHHHHHHHHhCCC--cceEEEEeecccCCcccccc
Confidence 46899986 89999999999999864 45442222211111 222555778855 11122245666566554211
Q ss_pred -------CCCeeEEEccccHH
Q 036939 119 -------GLAVPVEVVPVCWK 132 (215)
Q Consensus 119 -------K~plPVEV~P~a~~ 132 (215)
.+|=|=|-+|.+++
T Consensus 177 ~aDaVFLDlPaPw~AiPha~~ 197 (314)
T KOG2915|consen 177 KADAVFLDLPAPWEAIPHAAK 197 (314)
T ss_pred ccceEEEcCCChhhhhhhhHH
Confidence 46888888888877
No 130
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=33.26 E-value=1.7e+02 Score=25.90 Aligned_cols=61 Identities=15% Similarity=0.216 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCcCCC-EEEeCcChh---------------HHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCe
Q 036939 34 KIAANKSVEFVKSGM-VVGLGTDST---------------ATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPL 97 (215)
Q Consensus 34 ~~aA~~A~~~V~~g~-vIGLGsGST---------------v~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v 97 (215)
..+.++|.+++++|. +|=+|.-|| +..+++.|.+.. .. .+-+=|.+.++.+.|-++|..+
T Consensus 24 ~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~---~~-plSIDT~~~~v~e~al~~G~~i 99 (257)
T cd00739 24 DKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL---DV-LISVDTFRAEVARAALEAGADI 99 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC---CC-cEEEeCCCHHHHHHHHHhCCCE
Confidence 445677888999995 899997776 555666664321 23 3666677888888888889887
Q ss_pred e
Q 036939 98 S 98 (215)
Q Consensus 98 ~ 98 (215)
+
T Consensus 100 I 100 (257)
T cd00739 100 I 100 (257)
T ss_pred E
Confidence 6
No 131
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=33.25 E-value=79 Score=23.56 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=23.1
Q ss_pred ChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 55 DSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 55 GSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
|..+..+++.++ ..+.++..|..-..+++++|..
T Consensus 3 G~~a~q~ak~~G--------~~vi~~~~~~~k~~~~~~~Ga~ 36 (130)
T PF00107_consen 3 GLMAIQLAKAMG--------AKVIATDRSEEKLELAKELGAD 36 (130)
T ss_dssp HHHHHHHHHHTT--------SEEEEEESSHHHHHHHHHTTES
T ss_pred HHHHHHHHHHcC--------CEEEEEECCHHHHHHHHhhccc
Confidence 445555555433 2577888888888899999855
No 132
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=33.02 E-value=32 Score=32.81 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=68.5
Q ss_pred ceeEEEecCCcccCCCCeeEEEccccHHHHHHHHhcchhcCCCceeecce---eEecCCCE---EEeecCCCCCCCHHHH
Q 036939 105 VIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTC---YEKHNGNC---IIDLYFKKDIGDMEVA 178 (215)
Q Consensus 105 ~iDl~iDGaDeVd~K~plPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR~p---~vTDnGN~---IlD~~f~~~i~dp~~l 178 (215)
-|.-+|..|++||-.-.--.|-+...+..++.++++.+.+.|.+-+ | +..|||-| |+-++-. .+...|
T Consensus 212 lInp~f~~c~~vdF~~~~G~e~lA~~Vd~~L~kir~KY~eYgI~e~---PfViVKADaGTYGMGImtv~~~---~ev~~L 285 (403)
T TIGR02049 212 LINPYFEKCDGIDFDDREGEDALATAVDQVLSKTQKKYEEYGIHTQ---PYVIVKADAGTYGMGIMTATSG---EEVLGL 285 (403)
T ss_pred cccHhhhccCCcCCCccccHHHHHHHHHHHHHHHHHHHHHcCCCCC---CeEEEEcCCCCCCceEEEecCH---HHHHHh
Confidence 4778899999999765667777888889999999988887777544 5 55799865 5555533 367778
Q ss_pred HHHHccccCeEEeeeeccccccEEEEEcCCCeEEe
Q 036939 179 SNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIK 213 (215)
Q Consensus 179 ~~~L~~i~pGVVe~GLF~~~a~~vivg~~~Gv~~~ 213 (215)
+++-++= -.++.-|+ ..+.||| ++||...
T Consensus 286 NrK~RnK-M~~~Keg~---~V~~VIi--QEGV~T~ 314 (403)
T TIGR02049 286 NRKERNK-MAKVKEGL---EVSEVII--QEGVYTF 314 (403)
T ss_pred hhhhhhh-cccccCCC---ccceEEE--ecCccee
Confidence 7777766 56666664 3456776 4665443
No 133
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=33.00 E-value=1.1e+02 Score=27.10 Aligned_cols=54 Identities=19% Similarity=0.143 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc
Q 036939 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS 83 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS 83 (215)
.++|+++.+.+++.+.....|-.|.|++...-+-+++++.++-+...+.++|++
T Consensus 50 ~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~pP~ 103 (285)
T TIGR00674 50 HEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVTPY 103 (285)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 456777778888888755545555655333333334444444445456666554
No 134
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=32.81 E-value=92 Score=27.65 Aligned_cols=52 Identities=31% Similarity=0.415 Sum_probs=31.9
Q ss_pred HHHHHH-HHHh--cCcCCC-EEEeC--cChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHH
Q 036939 33 KKIAAN-KSVE--FVKSGM-VVGLG--TDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQA 90 (215)
Q Consensus 33 K~~aA~-~A~~--~V~~g~-vIGLG--sGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~ 90 (215)
|.+||. .-++ .+++|+ |+.|| ||+|+.|+.+-.+. +| -+-+|=.|.+....+
T Consensus 57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~---~G---~VYaVEfs~r~~rdL 114 (229)
T PF01269_consen 57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGP---DG---VVYAVEFSPRSMRDL 114 (229)
T ss_dssp HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTT---TS---EEEEEESSHHHHHHH
T ss_pred HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCC---CC---cEEEEEecchhHHHH
Confidence 555553 2333 668885 66666 69999999886653 23 377888888776443
No 135
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=32.81 E-value=2.7e+02 Score=27.70 Aligned_cols=101 Identities=20% Similarity=0.266 Sum_probs=67.4
Q ss_pred HHHHHHHHhcCcCCCE-EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc-----HHHHHHHHHCCCCeee--cCCC--
Q 036939 34 KIAANKSVEFVKSGMV-VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS-----KTTHDQAVSLGIPLSD--LDSH-- 103 (215)
Q Consensus 34 ~~aA~~A~~~V~~g~v-IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS-----~~t~~~~~~~Gi~v~~--l~~~-- 103 (215)
++|.+.|.+-|++|.+ +--|+-+++.+++.+-.++.+ ++ .+.+|=+- -.....+...|++... +...
T Consensus 347 qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k--~f-rVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~sy 423 (556)
T KOG1467|consen 347 QAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGK--KF-RVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASY 423 (556)
T ss_pred HHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCc--ce-EEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHH
Confidence 3455667778999985 678999999998888443322 23 24444332 2344556667999652 2222
Q ss_pred --CceeEEEecCCcccC------------------CCCeeEEEccccHHHHHHH
Q 036939 104 --PVIDLAIDGADEVDP------------------GLAVPVEVVPVCWKFTANR 137 (215)
Q Consensus 104 --~~iDl~iDGaDeVd~------------------K~plPVEV~P~a~~~v~~~ 137 (215)
...+..|.||..+-. .+-+||-|-=.+++...|-
T Consensus 424 im~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~yKF~eRv 477 (556)
T KOG1467|consen 424 IMLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAYKFHERV 477 (556)
T ss_pred HHHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechhhhhhhh
Confidence 257889999999855 3689999988888876553
No 136
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=32.79 E-value=1.9e+02 Score=26.09 Aligned_cols=44 Identities=25% Similarity=0.329 Sum_probs=27.3
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHh----cCCCCCEEEecCcHHHHHHH
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLH----QGKLKNIVGIPTSKTTHDQA 90 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~----~~~l~~i~~V~tS~~t~~~~ 90 (215)
+...+||+|+||+.-. ++.++-... ...+ .+..|||...|-.++
T Consensus 78 ~~d~IiaiGGGs~~D~-aKa~a~~~~~~~~~~~~-p~i~VPTtagtgse~ 125 (332)
T cd08180 78 KPDIVIALGGGSAIDA-AKAIIYFAKKLGKKKKP-LFIAIPTTSGTGSEV 125 (332)
T ss_pred CCCEEEEECCchHHHH-HHHHHHHHhCCCCCCCC-CEEEeCCCCcchHhh
Confidence 4567999999997643 243322111 1124 588999987776555
No 137
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=32.59 E-value=3.5e+02 Score=23.81 Aligned_cols=51 Identities=16% Similarity=0.086 Sum_probs=31.1
Q ss_pred cCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 43 FVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 43 ~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
.+++|.+|-+++...+-.++-.+++. .| ...+.++.++.+...++.++|+.
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~--~G-~~~v~~~~~~~~~~~~~~~~g~~ 221 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARL--KN-PKKLIVLDLKDERLALARKFGAD 221 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cC-CcEEEEEcCCHHHHHHHHHcCCc
Confidence 45778766664444555555555543 22 22366677777777888888875
No 138
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=32.46 E-value=1.7e+02 Score=26.53 Aligned_cols=55 Identities=15% Similarity=0.256 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHhc-CcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHH
Q 036939 29 QDELKKIAANKSVEF-VKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT 86 (215)
Q Consensus 29 ~~~~K~~aA~~A~~~-V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t 86 (215)
.+...+.+......- =++..+|++|+||+.-. ++.++....+| + .+..|||+.-+
T Consensus 68 ~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~-ak~vA~~~~rg-i-p~i~VPTT~~a 123 (345)
T cd08195 68 LETLEKLYDALLEAGLDRKSLIIALGGGVVGDL-AGFVAATYMRG-I-DFIQIPTTLLA 123 (345)
T ss_pred HHHHHHHHHHHHHcCCCCCCeEEEECChHHHhH-HHHHHHHHhcC-C-CeEEcchhHHH
Confidence 444444443332222 35678999999997654 35555322333 5 58899998633
No 139
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=32.29 E-value=2.2e+02 Score=24.92 Aligned_cols=63 Identities=29% Similarity=0.293 Sum_probs=41.6
Q ss_pred HHHHHHHhcCcCC-CEEEeCcC-----hhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeec
Q 036939 35 IAANKSVEFVKSG-MVVGLGTD-----STATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDL 100 (215)
Q Consensus 35 ~aA~~A~~~V~~g-~vIGLGsG-----STv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l 100 (215)
.+++...++.+.| .++-|-+| ||..++++.|.++. .+. ++.+||-=......++.+|+++..-
T Consensus 80 ~~~~~i~~~~~~g~~v~~l~~GDp~~ys~~~~l~~~l~~~~--~~~-~veivPGIss~~a~aa~~g~pL~~~ 148 (238)
T PRK05948 80 AAADQVWHYLEQGEDVAFACEGDVSFYSTFTYLAQTLQELY--PQV-AIQTIPGVCSPLAAAAALGIPLTLG 148 (238)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCChHHHHHHHHHHHHHHhcC--CCC-CEEEECChhHHHHHHHHhCCCeecC
Confidence 3455556666676 57777777 66667767665422 124 5888887666666678889998744
No 140
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=31.97 E-value=92 Score=26.63 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=33.1
Q ss_pred HHHHhcCcCCCE--EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHH----HHHHHCCCCe
Q 036939 38 NKSVEFVKSGMV--VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH----DQAVSLGIPL 97 (215)
Q Consensus 38 ~~A~~~V~~g~v--IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~----~~~~~~Gi~v 97 (215)
.+|++++++|.+ +|-|.|..+.++++. | . +++.+=.|.... .++++.++++
T Consensus 23 ~~a~~~~~~g~~LDlgcG~GRNalyLA~~-------G-~-~VtAvD~s~~al~~l~~~a~~~~l~i 79 (192)
T PF03848_consen 23 LEAVPLLKPGKALDLGCGEGRNALYLASQ-------G-F-DVTAVDISPVALEKLQRLAEEEGLDI 79 (192)
T ss_dssp HHHCTTS-SSEEEEES-TTSHHHHHHHHT-------T---EEEEEESSHHHHHHHHHHHHHTT-TE
T ss_pred HHHHhhcCCCcEEEcCCCCcHHHHHHHHC-------C-C-eEEEEECCHHHHHHHHHHHhhcCcee
Confidence 456889999997 677788888887652 2 4 688887777443 4455567774
No 141
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=31.27 E-value=1.6e+02 Score=24.47 Aligned_cols=59 Identities=10% Similarity=-0.099 Sum_probs=45.6
Q ss_pred HHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 39 KSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 39 ~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
.+.....+-..|-.-|++.+.+|.+.+.+... ..+.+.++.+-...|+..++++|++..
T Consensus 45 ~~~~~~~~~d~iiftS~~av~~~~~~~~~~~~-~~~~~~~~~avG~~Ta~~l~~~G~~~~ 103 (249)
T PRK05928 45 AAQLAALGADWVIFTSKNAVEFLLSALKKKKL-KWPKNKKYAAIGEKTALALKKLGGKVV 103 (249)
T ss_pred HHHhhCCCCCEEEEECHHHHHHHHHHHHhcCc-CCCCCCEEEEECHHHHHHHHHcCCCcc
Confidence 34456667789999999999999998862111 224468899999999999999998754
No 142
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=31.22 E-value=1.6e+02 Score=26.89 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=25.8
Q ss_pred CcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcH
Q 036939 44 VKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSK 84 (215)
Q Consensus 44 V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~ 84 (215)
-++..+||+|+||+.-. ++.++....+ ++ .+..|||+.
T Consensus 91 ~r~d~IIavGGGsv~D~-aK~iA~~~~~-gi-p~i~IPTT~ 128 (358)
T PRK00002 91 DRSDTLIALGGGVIGDL-AGFAAATYMR-GI-RFIQVPTTL 128 (358)
T ss_pred CCCCEEEEEcCcHHHHH-HHHHHHHhcC-CC-CEEEcCchh
Confidence 35678999999997654 3555532222 34 588999986
No 143
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=31.19 E-value=1.5e+02 Score=29.10 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCcCC-CEEEeCcChh------HHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeee
Q 036939 34 KIAANKSVEFVKSG-MVVGLGTDST------ATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSD 99 (215)
Q Consensus 34 ~~aA~~A~~~V~~g-~vIGLGsGST------v~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~ 99 (215)
..+.++|.++++.| .+|=||.+|| +..+++.|.+.. .. .+-+=|.+.++...+-+.|..++.
T Consensus 165 ~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~---~~-pISIDT~~~~v~eaAL~aGAdiIN 233 (499)
T TIGR00284 165 DGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL---DS-PVIADTPTLDELYEALKAGASGVI 233 (499)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC---CC-cEEEeCCCHHHHHHHHHcCCCEEE
Confidence 45677888899998 5999999998 666666664321 23 366667778888888888988663
No 144
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=31.11 E-value=3.1e+02 Score=24.90 Aligned_cols=53 Identities=25% Similarity=0.264 Sum_probs=30.8
Q ss_pred cCcCCC-EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHC-CCCeee
Q 036939 43 FVKSGM-VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL-GIPLSD 99 (215)
Q Consensus 43 ~V~~g~-vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~-Gi~v~~ 99 (215)
.+++|. ++=+|+|+.-..+++ +++.. | ...+.++..+.+....++++ +..++.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~-la~~~--g-~~~vi~~~~~~~~~~~~~~~~~~~vi~ 235 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAAR-SAKLL--G-AERVIAIDRVPERLEMARSHLGAETIN 235 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHH-HHHHc--C-CCEEEEEcCCHHHHHHHHHcCCcEEEc
Confidence 356665 444477654544444 44322 2 22366777777777888888 665554
No 145
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=30.96 E-value=80 Score=27.53 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=33.5
Q ss_pred eCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHH---HHHHHH-CCCCeeecCCC
Q 036939 52 LGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT---HDQAVS-LGIPLSDLDSH 103 (215)
Q Consensus 52 LGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t---~~~~~~-~Gi~v~~l~~~ 103 (215)
.|||-|+ +++++-+++++. + .+-+|+....| +..+++ .|.+++..+.-
T Consensus 22 ~GSGKTa--Lie~~~~~L~~~-~-~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG 73 (202)
T COG0378 22 PGSGKTA--LIEKTLRALKDE-Y-KIAVITGDIYTKEDADRLRKLPGEPIIGVETG 73 (202)
T ss_pred CCcCHHH--HHHHHHHHHHhh-C-CeEEEeceeechhhHHHHHhCCCCeeEEeccC
Confidence 3678887 455655555544 5 58899999888 466777 89888876544
No 146
>PRK10646 ADP-binding protein; Provisional
Probab=30.92 E-value=1.2e+02 Score=25.06 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCcCCCEEE----eCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCCCCce
Q 036939 31 ELKKIAANKSVEFVKSGMVVG----LGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVI 106 (215)
Q Consensus 31 ~~K~~aA~~A~~~V~~g~vIG----LGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~~~~i 106 (215)
+.-++.|++-++.+++|.+|. ||+|-|+ |++.|++.+- .++ .+-++++.. ++.+..+ .. .+-|+
T Consensus 12 ~~t~~l~~~la~~l~~g~vi~L~GdLGaGKTt--f~rgl~~~Lg---~~~-~V~SPTFtl---v~~Y~~~--~~-~l~H~ 79 (153)
T PRK10646 12 QATLDLGARVAKACDGATVIYLYGDLGAGKTT--FSRGFLQALG---HQG-NVKSPTYTL---VEPYTLD--NL-MVYHF 79 (153)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCCCCCHHH--HHHHHHHHcC---CCC-CCCCCCEee---EEEeeCC--CC-CEEEE
Confidence 334456666678889999996 5999987 5677765431 111 123444333 3333110 01 12378
Q ss_pred eEE-EecCCccc
Q 036939 107 DLA-IDGADEVD 117 (215)
Q Consensus 107 Dl~-iDGaDeVd 117 (215)
|+| +.+.+|++
T Consensus 80 DlYRL~~~~el~ 91 (153)
T PRK10646 80 DLYRLADPEELE 91 (153)
T ss_pred eeccCCCHHHHH
Confidence 888 56666654
No 147
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=30.33 E-value=44 Score=28.44 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=30.3
Q ss_pred EeCcChhHHHHHHHHHhHH-hcCCCCCEEEecCcHHHHHHHHHC-CCCee
Q 036939 51 GLGTDSTATHAVDKIGELL-HQGKLKNIVGIPTSKTTHDQAVSL-GIPLS 98 (215)
Q Consensus 51 GLGsGSTv~~~i~~L~~~~-~~~~l~~i~~V~tS~~t~~~~~~~-Gi~v~ 98 (215)
-|+||.|+..+++.|.++- ...++.=+.++++..-...+++++ .+++.
T Consensus 130 mlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~~Gl~~l~~~~P~v~I~ 179 (207)
T PF14681_consen 130 MLATGGSAIAAIEILKEHGVPEENIIIVSVIASPEGLERLLKAFPDVRIY 179 (207)
T ss_dssp EESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEHHHHHHHHHHSTTSEEE
T ss_pred cccchhhHHHHHHHHHHcCCCcceEEEEEEEecHHHHHHHHHhCCCeEEE
Confidence 4789999999999997642 222222144455666666666665 56554
No 148
>PLN02285 methionyl-tRNA formyltransferase
Probab=30.26 E-value=1e+02 Score=28.34 Aligned_cols=48 Identities=19% Similarity=0.267 Sum_probs=34.7
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCC-CCEEEe-cCcHH------------HHHHHHHCCCC
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKL-KNIVGI-PTSKT------------THDQAVSLGIP 96 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l-~~i~~V-~tS~~------------t~~~~~~~Gi~ 96 (215)
++.+||+......+++|.+..+++.. .++..| +...+ ....|+++||+
T Consensus 9 I~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp 70 (334)
T PLN02285 9 LVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFP 70 (334)
T ss_pred EEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCC
Confidence 78999999999999999876554433 245544 44332 56889999999
No 149
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=29.75 E-value=1.3e+02 Score=23.20 Aligned_cols=33 Identities=12% Similarity=0.015 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCcC--CCEEEeCcChhHHHHHH
Q 036939 30 DELKKIAANKSVEFVKS--GMVVGLGTDSTATHAVD 63 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~--g~vIGLGsGSTv~~~i~ 63 (215)
+..|..+..-|-++.+- |--| ..|+.|..++-+
T Consensus 8 d~dK~~~~~~a~~~~~ll~Gf~i-~AT~gTa~~L~~ 42 (115)
T cd01422 8 DNKKEDLVEFVKQHQELLSRHRL-VATGTTGLLIQE 42 (115)
T ss_pred ccchHHHHHHHHHHHHHhcCCEE-EEechHHHHHHH
Confidence 44566666666666655 8777 588888877654
No 150
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=29.30 E-value=1e+02 Score=25.88 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=19.3
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHH
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELL 69 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~ 69 (215)
++.-+|+|.+|||-..+-+.|.+..
T Consensus 20 ~~~~~i~LsgGstp~~~y~~L~~~~ 44 (199)
T PF01182_consen 20 RGRAVIALSGGSTPKPLYQELAKLH 44 (199)
T ss_dssp CSSEEEEE--SCTHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHhhhc
Confidence 3456999999999999999998754
No 151
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=29.22 E-value=1.9e+02 Score=27.43 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=36.9
Q ss_pred CcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHH-HHHHHCC-CCeeecC
Q 036939 44 VKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH-DQAVSLG-IPLSDLD 101 (215)
Q Consensus 44 V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~-~~~~~~G-i~v~~l~ 101 (215)
+++-.++=+|+|.+...+++.|.++ | ..+++++.-+...+ .++.++| ....+++
T Consensus 179 l~~kkvlviGaG~~a~~va~~L~~~---g-~~~I~V~nRt~~ra~~La~~~~~~~~~~~~ 234 (414)
T PRK13940 179 ISSKNVLIIGAGQTGELLFRHVTAL---A-PKQIMLANRTIEKAQKITSAFRNASAHYLS 234 (414)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHc---C-CCEEEEECCCHHHHHHHHHHhcCCeEecHH
Confidence 3445688899999999999999752 2 33688888876655 5555555 5555443
No 152
>PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B.
Probab=29.14 E-value=1.1e+02 Score=27.03 Aligned_cols=61 Identities=23% Similarity=0.268 Sum_probs=27.9
Q ss_pred cCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCCCCceeEEEecCCcccC
Q 036939 43 FVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDP 118 (215)
Q Consensus 43 ~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~~~~iDl~iDGaDeVd~ 118 (215)
-++|||.||++.=|.=..++-+.. -+| +++..|..+..-....-.. ..||-+|+-.|+++.
T Consensus 110 ~i~dGmRVGiD~~S~Dq~~LT~~~---~~g--k~Ve~Vei~Y~q~~~~l~~----------g~IDA~IWN~d~i~~ 170 (232)
T PF14503_consen 110 EIEDGMRVGIDPSSIDQKILTEAE---FEG--KNVEFVEIPYNQLLELLRS----------GEIDAAIWNYDEIED 170 (232)
T ss_dssp G-----EEEE-TT-HHHHHHHHHH---HTT--S--EEEE--HHHHHHHHHH----------TS--EEEEE--HHCC
T ss_pred ceeeeeEeecCCCCccHHHHHHHH---hCC--CceEEEEecHHHHHHHHHC----------CCccEEEECCccccc
Confidence 467889999998887766655432 122 2677887766544322111 269999999998875
No 153
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=29.09 E-value=2e+02 Score=25.90 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=33.9
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCCCEE-EecCc------------HHHHHHHHHCCCCeeecCC
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLKNIV-GIPTS------------KTTHDQAVSLGIPLSDLDS 102 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~-~V~tS------------~~t~~~~~~~Gi~v~~l~~ 102 (215)
++-+||+.-....++.|.+. + . .+. +|+.. .....+|+++|||+.....
T Consensus 3 Ivf~G~~~~a~~~L~~L~~~---~-~-~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~ 64 (309)
T PRK00005 3 IVFMGTPEFAVPSLKALLES---G-H-EVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEK 64 (309)
T ss_pred EEEECCCHHHHHHHHHHHHC---C-C-cEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCC
Confidence 67899999998999988652 2 2 333 44422 2457899999999875433
No 154
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=28.95 E-value=1.2e+02 Score=27.65 Aligned_cols=36 Identities=8% Similarity=0.344 Sum_probs=24.7
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHH
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKT 85 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~ 85 (215)
+...+||+|+||..- .++.++-+ + ++ .+..|||..-
T Consensus 80 ~~d~IIaIGGGs~~D-~aK~vA~~-~--~~-p~i~IPTTag 115 (348)
T cd08175 80 DTDLIIAVGSGTIND-ITKYVSYK-T--GI-PYISVPTAPS 115 (348)
T ss_pred cCCEEEEECCcHHHH-HHHHHHHh-c--CC-CEEEecCccc
Confidence 777899999999764 34555532 1 24 5888998743
No 155
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=28.76 E-value=46 Score=29.55 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCcCCCEE---EeCcChhHHHHHHHHHh
Q 036939 33 KKIAANKSVEFVKSGMVV---GLGTDSTATHAVDKIGE 67 (215)
Q Consensus 33 K~~aA~~A~~~V~~g~vI---GLGsGSTv~~~i~~L~~ 67 (215)
|-....-..--|++|+.| |.||||...++++.++.
T Consensus 27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p 64 (247)
T PF08704_consen 27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGP 64 (247)
T ss_dssp HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTT
T ss_pred chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCC
Confidence 333334444478999975 99999999999999864
No 156
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=28.55 E-value=1.1e+02 Score=28.21 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=27.9
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhcCC----------------CCCEEEecCcHHHHHHH
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQGK----------------LKNIVGIPTSKTTHDQA 90 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~~~----------------l~~i~~V~tS~~t~~~~ 90 (215)
+...+||+|+||..-. ++.++-...++. + .+.+|||..-|-.++
T Consensus 83 ~~d~IIaiGGGS~~D~-aK~ia~~~~~~~~~~~~~~~~~~~~~~~~-p~i~VPTtagTGsE~ 142 (374)
T cd08189 83 GCDAILAVGGGSVIDC-AKAIAARAANPKKSLRKLTGLLKVKKPLP-PLFAIPTTAGTGSEV 142 (374)
T ss_pred CCCEEEEeCCccHHHH-HHHHHHHHhCCCCCHHHHhCccccCCCCC-CEEEEECCCcccccc
Confidence 4567999999997643 344443322222 3 588899987775544
No 157
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=28.45 E-value=4.2e+02 Score=23.42 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=33.2
Q ss_pred HHHHHh---cCcCCC-EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 37 ANKSVE---FVKSGM-VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 37 A~~A~~---~V~~g~-vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
|..|+. ..++|. ++=.|+|+.-..+++ ++.. .| .+.+.++.++.+-..+++++|+.
T Consensus 165 a~~al~~~~~~~~g~~vlI~g~g~vG~~~~~-lak~--~G-~~~v~~~~~~~~~~~~~~~~g~~ 224 (361)
T cd08231 165 VLAALDRAGPVGAGDTVVVQGAGPLGLYAVA-AAKL--AG-ARRVIVIDGSPERLELAREFGAD 224 (361)
T ss_pred HHHHHHhccCCCCCCEEEEECCCHHHHHHHH-HHHH--cC-CCeEEEEcCCHHHHHHHHHcCCC
Confidence 344444 334665 444577655555554 4432 12 32477777788878888888875
No 158
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=28.42 E-value=1.9e+02 Score=23.51 Aligned_cols=61 Identities=8% Similarity=-0.003 Sum_probs=45.8
Q ss_pred HHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeec
Q 036939 39 KSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDL 100 (215)
Q Consensus 39 ~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l 100 (215)
.+...+.+-..|-.=|.+.+.+|.+.+.+.. ...+.++.+++-+..|+..++++|++....
T Consensus 42 ~~~~~~~~~~~iiftS~~av~~~~~~~~~~~-~~~~~~~~~~avG~~Ta~~l~~~g~~~~~~ 102 (239)
T cd06578 42 AALADLDEYDWLIFTSPNAVEAFFEALEELG-LRALAGLKIAAVGPKTAEALREAGLTADFV 102 (239)
T ss_pred HHHHhcCCCCEEEEECHHHHHHHHHHHHhhC-CccccCCEEEEECHHHHHHHHHcCCCceeC
Confidence 3344444678888899999999999886531 122447889999999999999999876543
No 159
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=28.25 E-value=1.2e+02 Score=26.97 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCcCCC--EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc
Q 036939 30 DELKKIAANKSVEFVKSGM--VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS 83 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~--vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS 83 (215)
.++|+++.+.+++.+.... ++|+|+.||- ..++ ++++.++-+...+.++|+.
T Consensus 53 ~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~-~~i~-la~~a~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 53 TEEKKEIFRIAKDEAKDQIALIAQVGSVNLK-EAVE-LGKYATELGYDCLSAVTPF 106 (290)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEecCCCCHH-HHHH-HHHHHHHhCCCEEEEeCCc
Confidence 3567777888888876444 4566655553 3333 3333333334456666653
No 160
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=28.07 E-value=51 Score=26.61 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=32.9
Q ss_pred CCCE-EEeecCCCCCCCH---HHHHHHHccccCeEEeeeecc-ccccEEEEEcCCCeEEe
Q 036939 159 NGNC-IIDLYFKKDIGDM---EVASNRILRLIAGVVEHGMFL-DMATTVIIVGKLGVTIK 213 (215)
Q Consensus 159 nGN~-IlD~~f~~~i~dp---~~l~~~L~~i~pGVVe~GLF~-~~a~~vivg~~~Gv~~~ 213 (215)
+||. |+|+.+-. .|+ ..+-++|+++ +.++|=+. .+++.+++-+|+|+.+.
T Consensus 63 ~GNIvIaDit~l~--~d~~~~~~V~e~lr~~---a~~~ggdi~~l~~n~viITP~~IkI~ 117 (124)
T COG2450 63 AGNIVIADITPLE--RDDDLFERVIEELRDT---AEEVGGDIAKLGDNVVIITPNGIKID 117 (124)
T ss_pred cCCEEEEEcCCcc--cChhHHHHHHHHHHHH---HHHhCchhhhhcCCEEEECCCCceEe
Confidence 5664 56776432 144 4455677777 66777775 67877888899997763
No 161
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=28.06 E-value=1.3e+02 Score=25.83 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=27.3
Q ss_pred EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 50 VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 50 IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
||-|+|..... |+++.. + . .++++=.|......+++.++...
T Consensus 36 lGcG~G~~~~~----l~~~~p-~-~-~v~gvD~s~~~~~~a~~~~~~~~ 77 (255)
T PRK14103 36 LGCGPGNLTRY----LARRWP-G-A-VIEALDSSPEMVAAARERGVDAR 77 (255)
T ss_pred EcCCCCHHHHH----HHHHCC-C-C-EEEEEECCHHHHHHHHhcCCcEE
Confidence 55666655544 443321 1 2 58899999888888888787755
No 162
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=27.79 E-value=1.4e+02 Score=27.20 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=28.3
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhc---------------CCCCCEEEecCcHHHHHHH
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQ---------------GKLKNIVGIPTSKTTHDQA 90 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~---------------~~l~~i~~V~tS~~t~~~~ 90 (215)
+...+||+|+||..- .++.++..... ..+ .+.+|||...|-.++
T Consensus 80 ~~d~IiaiGGGs~~D-~AK~va~~~~~~~~~~~~~~~~~~~~~~~-p~i~VPTt~gtgse~ 138 (370)
T cd08551 80 GCDGVIAVGGGSVLD-TAKAIALLATNPGDIWDYEGGKPVIKPAL-PLIAIPTTAGTGSEV 138 (370)
T ss_pred CCCEEEEeCCchHHH-HHHHHHHHHhCCCcHHHHhCcccccCCCC-CEEEecCCCcchhhc
Confidence 456799999999754 34555433311 134 588999998775544
No 163
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=27.40 E-value=90 Score=24.75 Aligned_cols=34 Identities=29% Similarity=0.327 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCcCCCEEEe----CcChhHHHHHHHHHhHH
Q 036939 34 KIAANKSVEFVKSGMVVGL----GTDSTATHAVDKIGELL 69 (215)
Q Consensus 34 ~~aA~~A~~~V~~g~vIGL----GsGSTv~~~i~~L~~~~ 69 (215)
++.|+.-++.+++|.+|-| |+|-|+ |++.+++.+
T Consensus 2 ~~la~~l~~~l~~g~vi~L~GdLGaGKTt--f~r~l~~~l 39 (123)
T PF02367_consen 2 IRLAKKLAQILKPGDVILLSGDLGAGKTT--FVRGLARAL 39 (123)
T ss_dssp HHHHHHHHHHHSS-EEEEEEESTTSSHHH--HHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCHHH--HHHHHHHHc
Confidence 3466677778899999974 999987 567776644
No 164
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=27.36 E-value=3.3e+02 Score=23.64 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=30.4
Q ss_pred cCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 43 FVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 43 ~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
.+++|..|-+++++.+.+++-.+++. .| ...+.++.++.+...+++++|..
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~--~g-~~~v~~~~~~~~~~~~~~~~g~~ 214 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARL--LG-AARIIAVDSNPERLDLAKEAGAT 214 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH--cC-CCEEEEEeCCHHHHHHHHHhCCc
Confidence 45778877665455555555555542 22 22366666676667777888743
No 165
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=27.28 E-value=3e+02 Score=25.90 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=36.0
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHH-HHHHHCCCCeeec
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH-DQAVSLGIPLSDL 100 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~-~~~~~~Gi~v~~l 100 (215)
+...++=+|+|.....+++.|..+ | ..+++++..+...+ .+++++|..+.++
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~---G-~~~V~v~~r~~~ra~~la~~~g~~~~~~ 233 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEK---G-VRKITVANRTLERAEELAEEFGGEAIPL 233 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHC---C-CCeEEEEeCCHHHHHHHHHHcCCcEeeH
Confidence 344577789999999999988642 2 33577777776654 4677777655443
No 166
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=27.25 E-value=3.4e+02 Score=22.05 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcC----cCCCEEEeCcChhH---HHHHHHHHhHHhcCCCCCEEE--ec----CcHHHH---HHHHHC
Q 036939 30 DELKKIAANKSVEFV----KSGMVVGLGTDSTA---THAVDKIGELLHQGKLKNIVG--IP----TSKTTH---DQAVSL 93 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V----~~g~vIGLGsGSTv---~~~i~~L~~~~~~~~l~~i~~--V~----tS~~t~---~~~~~~ 93 (215)
|.+=+.+|+...+++ .+.-+|=.|+|.+- ..++++|.+ .+. ++++ +. .|.... .++++.
T Consensus 6 E~Ag~~~a~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~----~G~-~V~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF03853_consen 6 ENAGRAIAELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLAN----RGY-NVTVYLVGPPEKLSEDAKQQLEILKKM 80 (169)
T ss_dssp HHHHHHHHHHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHH----TTC-EEEEEEEESSSSTSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHH----CCC-eEEEEEEeccccCCHHHHHHHHHHHhc
Confidence 455555666666655 23336778888764 445566543 234 3555 32 233333 567888
Q ss_pred CCCeeecCCCC-------ceeEEEecCCcccCCCCeeEEEccccHHHHHHHHhc
Q 036939 94 GIPLSDLDSHP-------VIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPD 140 (215)
Q Consensus 94 Gi~v~~l~~~~-------~iDl~iDGaDeVd~K~plPVEV~P~a~~~v~~~l~~ 140 (215)
|+++....... ..|+.||+--+..-+-++. .-+..+++.+.+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~dlIIDal~G~G~~~~l~-----~~~~~~i~~iN~ 129 (169)
T PF03853_consen 81 GIKIIELDSDEDLSEALEPADLIIDALFGTGFSGPLR-----GPIAELIDWINA 129 (169)
T ss_dssp T-EEESSCCGSGGGHHGSCESEEEEES-STTGGSCGS-----TCHHHHHHHHHH
T ss_pred CCcEeeccccchhhcccccccEEEEecccCCCCCCcC-----HHHHHHHHHHhc
Confidence 98888654332 4899999987775332321 235555565555
No 167
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=26.88 E-value=2e+02 Score=23.74 Aligned_cols=51 Identities=16% Similarity=0.051 Sum_probs=39.5
Q ss_pred CCCEEEeCcChhHHHHHHHHH---hHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 46 SGMVVGLGTDSTATHAVDKIG---ELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 46 ~g~vIGLGsGSTv~~~i~~L~---~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
+-..|-+=|...|.+|.+.|. ...+ .+.+++++.-+..|+..++++|++..
T Consensus 42 ~~d~viftS~~av~~~~~~l~~~~~~~~--~~~~~~i~avG~~Ta~~l~~~G~~~~ 95 (231)
T PF02602_consen 42 NYDWVIFTSPNAVRAFFKALQSAGADLR--LLKNIKIFAVGPKTAEALREYGFQPD 95 (231)
T ss_dssp CSSEEEESSHHHHHHHHHHHHHTTHHHH--HHHHSEEEESSHHHHHHHHHTT-EEC
T ss_pred CCCEEEEECHHHHHHHHHHHhhhhhhhh--hccCCeEEEEcHHHHHHHHHcCCCcc
Confidence 778999999999999999886 0011 12257788999999999999998863
No 168
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=26.77 E-value=2.5e+02 Score=25.96 Aligned_cols=54 Identities=22% Similarity=0.265 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHh-cCcC-CCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcH
Q 036939 28 TQDELKKIAANKSVE-FVKS-GMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSK 84 (215)
Q Consensus 28 ~~~~~K~~aA~~A~~-~V~~-g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~ 84 (215)
+.+...+.+....-. .-++ ..+|++|+|++.- +++.++...++| . .+..|||+.
T Consensus 69 s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D-~ak~~A~~~~rg-~-p~i~VPTT~ 124 (354)
T cd08199 69 TMDTVLKIVDALDAFGISRRREPVLAIGGGVLTD-VAGLAASLYRRG-T-PYVRIPTTL 124 (354)
T ss_pred CHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHH-HHHHHHHHhcCC-C-CEEEEcCcc
Confidence 344454444332222 3466 8899999998764 446665433333 4 588999985
No 169
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=26.58 E-value=1.5e+02 Score=25.25 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=25.2
Q ss_pred EeCcChhHHHHHHHHHhHHhcCCC--CCEEEecCcHHHHHHHH
Q 036939 51 GLGTDSTATHAVDKIGELLHQGKL--KNIVGIPTSKTTHDQAV 91 (215)
Q Consensus 51 GLGsGSTv~~~i~~L~~~~~~~~l--~~i~~V~tS~~t~~~~~ 91 (215)
|=|||-|...+ +++...+..++. .+|.++|-+...+..++
T Consensus 21 ~AGSGKT~~l~-~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~ 62 (315)
T PF00580_consen 21 GAGSGKTTTLL-ERIAYLLYEGGVPPERILVLTFTNAAAQEMR 62 (315)
T ss_dssp -TTSSHHHHHH-HHHHHHHHTSSSTGGGEEEEESSHHHHHHHH
T ss_pred CCCCCchHHHH-HHHHHhhccccCChHHheecccCHHHHHHHH
Confidence 46899998665 444444554422 36999997877665553
No 170
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=26.46 E-value=1.6e+02 Score=24.06 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=30.5
Q ss_pred HhcCcCCC-E--EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 41 VEFVKSGM-V--VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 41 ~~~V~~g~-v--IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
.+++++++ + ||-|+|.....+.+.. .. .++++-.|.+....+++.+++.+
T Consensus 8 ~~~i~~~~~iLDiGcG~G~~~~~l~~~~-------~~-~~~giD~s~~~i~~a~~~~~~~~ 60 (194)
T TIGR02081 8 LNLIPPGSRVLDLGCGDGELLALLRDEK-------QV-RGYGIEIDQDGVLACVARGVNVI 60 (194)
T ss_pred HHhcCCCCEEEEeCCCCCHHHHHHHhcc-------CC-cEEEEeCCHHHHHHHHHcCCeEE
Confidence 34555664 3 6777777654443321 12 46788888877777777777654
No 171
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=26.43 E-value=70 Score=21.85 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=24.1
Q ss_pred CcCCCEEEeCcChhHHHHHHHHHhHHhc
Q 036939 44 VKSGMVVGLGTDSTATHAVDKIGELLHQ 71 (215)
Q Consensus 44 V~~g~vIGLGsGSTv~~~i~~L~~~~~~ 71 (215)
..+|...-+-.|+|+..+++.|...+.+
T Consensus 5 lpdG~~~~~~~g~T~~d~A~~I~~~l~~ 32 (60)
T PF02824_consen 5 LPDGSIKELPEGSTVLDVAYSIHSSLAK 32 (60)
T ss_dssp ETTSCEEEEETTBBHHHHHHHHSHHHHH
T ss_pred CCCCCeeeCCCCCCHHHHHHHHCHHHHh
Confidence 4789999999999999999999866553
No 172
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=26.41 E-value=1.5e+02 Score=26.51 Aligned_cols=40 Identities=28% Similarity=0.444 Sum_probs=28.1
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHH
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH 87 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~ 87 (215)
+...+||+|+||..- .++.++..... ++ .+..|||..-|-
T Consensus 78 ~~d~IIaiGGGs~~D-~aK~ia~~~~~-~~-p~i~iPTt~~tg 117 (332)
T cd07766 78 EVDAVIAVGGGSTLD-TAKAVAALLNR-GL-PIIIVPTTAATG 117 (332)
T ss_pred CcCEEEEeCCchHHH-HHHHHHHHhcC-CC-CEEEEeCCCchh
Confidence 566799999999764 34666544332 35 588999988874
No 173
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=26.30 E-value=92 Score=29.11 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=36.0
Q ss_pred HHHHh--cCcCCCEEEe-CcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 38 NKSVE--FVKSGMVVGL-GTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 38 ~~A~~--~V~~g~vIGL-GsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
..|++ .+++|..|++ |.|-.-.+.++..... | . .+.+++.|.+..++++++|-...
T Consensus 156 y~alk~~~~~pG~~V~I~G~GGlGh~avQ~Aka~---g-a-~Via~~~~~~K~e~a~~lGAd~~ 214 (339)
T COG1064 156 YRALKKANVKPGKWVAVVGAGGLGHMAVQYAKAM---G-A-EVIAITRSEEKLELAKKLGADHV 214 (339)
T ss_pred eeehhhcCCCCCCEEEEECCcHHHHHHHHHHHHc---C-C-eEEEEeCChHHHHHHHHhCCcEE
Confidence 44555 5788985443 4443333444433221 2 2 69999999999999999986633
No 174
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=26.15 E-value=3.2e+02 Score=23.46 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCcCCCE---EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcH----HHHHHHHHCCCC---ee-----
Q 036939 34 KIAANKSVEFVKSGMV---VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSK----TTHDQAVSLGIP---LS----- 98 (215)
Q Consensus 34 ~~aA~~A~~~V~~g~v---IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~----~t~~~~~~~Gi~---v~----- 98 (215)
|++...+++. ++|++ ||-||||-..+.+ .+... . .+..+--+. .+++=|+++|++ ++
T Consensus 23 Ral~ls~L~~-~~g~~l~DIGaGtGsi~iE~a-~~~p~-----~-~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap 94 (187)
T COG2242 23 RALTLSKLRP-RPGDRLWDIGAGTGSITIEWA-LAGPS-----G-RVIAIERDEEALELIERNAARFGVDNLEVVEGDAP 94 (187)
T ss_pred HHHHHHhhCC-CCCCEEEEeCCCccHHHHHHH-HhCCC-----c-eEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch
Confidence 3444444443 55554 8999999887776 33321 1 355555433 334556777766 22
Q ss_pred -ecCCCCceeEEEecCC
Q 036939 99 -DLDSHPVIDLAIDGAD 114 (215)
Q Consensus 99 -~l~~~~~iDl~iDGaD 114 (215)
.|.+.+++|-.|-|=-
T Consensus 95 ~~L~~~~~~daiFIGGg 111 (187)
T COG2242 95 EALPDLPSPDAIFIGGG 111 (187)
T ss_pred HhhcCCCCCCEEEECCC
Confidence 3445556777777743
No 175
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=26.12 E-value=2.7e+02 Score=25.00 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=52.3
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCC--CCEEEecCcHHHHH-HHHHCCCCeeecCCCCceeEEEecCCcccCCCCeeEE
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKL--KNIVGIPTSKTTHD-QAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLAVPVE 125 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l--~~i~~V~tS~~t~~-~~~~~Gi~v~~l~~~~~iDl~iDGaDeVd~K~plPVE 125 (215)
+--||.|+-...++.-|.+ ++.+ .+|.+...+.+.+. ++.++|+.. .+.-.-+++-+|- +=+-
T Consensus 4 IgfIG~G~Mg~Ai~~gl~~---~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~-----~~~~~~~~~~adv------v~La 69 (266)
T COG0345 4 IGFIGAGNMGEAILSGLLK---SGALPPEEIIVTNRSEEKRAALAAEYGVVT-----TTDNQEAVEEADV------VFLA 69 (266)
T ss_pred EEEEccCHHHHHHHHHHHh---cCCCCcceEEEeCCCHHHHHHHHHHcCCcc-----cCcHHHHHhhCCE------EEEE
Confidence 4568999999999998854 3422 26777778888885 888888873 1122233444444 4466
Q ss_pred EccccHHHHHHHHhc
Q 036939 126 VVPVCWKFTANRFPD 140 (215)
Q Consensus 126 V~P~a~~~v~~~l~~ 140 (215)
|-|..+..|+++|+.
T Consensus 70 vKPq~~~~vl~~l~~ 84 (266)
T COG0345 70 VKPQDLEEVLSKLKP 84 (266)
T ss_pred eChHhHHHHHHHhhc
Confidence 778888777777763
No 176
>PLN02828 formyltetrahydrofolate deformylase
Probab=25.89 E-value=1.1e+02 Score=27.59 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=31.4
Q ss_pred EeCcChhHHHHHHHHHhHHhcCCCC-CEEEecCcH------HHHHHHHHCCCCee
Q 036939 51 GLGTDSTATHAVDKIGELLHQGKLK-NIVGIPTSK------TTHDQAVSLGIPLS 98 (215)
Q Consensus 51 GLGsGSTv~~~i~~L~~~~~~~~l~-~i~~V~tS~------~t~~~~~~~Gi~v~ 98 (215)
.=|+||....++++. ++|.+. +|.+|=|+. .....|+++|||..
T Consensus 77 vSg~g~nl~~ll~~~----~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~ 127 (268)
T PLN02828 77 ASKQDHCLIDLLHRW----QDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYH 127 (268)
T ss_pred EcCCChhHHHHHHhh----hcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEE
Confidence 458888887766654 456552 577776665 67788999999976
No 177
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=25.86 E-value=1.1e+02 Score=27.80 Aligned_cols=42 Identities=21% Similarity=0.374 Sum_probs=28.3
Q ss_pred CcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHH
Q 036939 44 VKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQA 90 (215)
Q Consensus 44 V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~ 90 (215)
-+...+||+|+||..-. ++.++-.. ++ .+..|||..-|-.++
T Consensus 76 ~~~D~IIavGGGS~iD~-aK~ia~~~---~~-P~iaIPTTagTgse~ 117 (351)
T cd08170 76 NGADVVIGIGGGKTLDT-AKAVADYL---GA-PVVIVPTIASTDAPT 117 (351)
T ss_pred cCCCEEEEecCchhhHH-HHHHHHHc---CC-CEEEeCCccccCccc
Confidence 35568999999997643 46655322 24 588999987664443
No 178
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=25.63 E-value=1.2e+02 Score=27.34 Aligned_cols=48 Identities=15% Similarity=0.272 Sum_probs=31.0
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCC-CEEEe-cCcHHHHHHHHHCCCCeeec
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLK-NIVGI-PTSKTTHDQAVSLGIPLSDL 100 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~-~i~~V-~tS~~t~~~~~~~Gi~v~~l 100 (215)
+.+=|+||+...++++. ++|.+. +|.+| ++-.....+|+++|||+..+
T Consensus 94 vl~Sg~gsnl~al~~~~----~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~ 143 (286)
T PRK06027 94 ILVSKEDHCLGDLLWRW----RSGELPVEIAAVISNHDDLRSLVERFGIPFHHV 143 (286)
T ss_pred EEEcCCCCCHHHHHHHH----HcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEe
Confidence 34557788887777665 344441 45555 44445667889999998754
No 179
>TIGR00502 nagB glucosamine-6-phosphate isomerase. The set of proteins recognized by this model includes a closely related pair from Bacillus subtilis, one of which is uncharacterized but included as a member of the orthologous set.
Probab=25.34 E-value=1.3e+02 Score=26.24 Aligned_cols=46 Identities=33% Similarity=0.388 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHhcCcC------C-CEEEeCcChhHHHHHHHHHhHHhcCC
Q 036939 28 TQDELKKIAANKSVEFVKS------G-MVVGLGTDSTATHAVDKIGELLHQGK 73 (215)
Q Consensus 28 ~~~~~K~~aA~~A~~~V~~------g-~vIGLGsGSTv~~~i~~L~~~~~~~~ 73 (215)
+.+++-+.+|+.-++.++. | -+|+|-+|||-..+-+.|++..+.+.
T Consensus 8 ~~~~l~~~~a~~i~~~i~~~~~~~~~~~~i~lsgGstP~~~y~~L~~~~~~~~ 60 (259)
T TIGR00502 8 TYEELSKWAARHIANRINEFKPTAARPFVLGLPTGGTPIGTYKQLIELHQAGK 60 (259)
T ss_pred CHHHHHHHHHHHHHHHHHHhCccccCceEEEEcCCCChHHHHHHHHHHhhccC
Confidence 3444444455444443322 1 28999999999999999987544443
No 180
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.32 E-value=1.1e+02 Score=27.67 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=33.1
Q ss_pred eCcChhHHHHHHHHHhHHhcCCCCCEEEecC----cHHHHHHHHHCCCC-eeecCCC
Q 036939 52 LGTDSTATHAVDKIGELLHQGKLKNIVGIPT----SKTTHDQAVSLGIP-LSDLDSH 103 (215)
Q Consensus 52 LGsGSTv~~~i~~L~~~~~~~~l~~i~~V~t----S~~t~~~~~~~Gi~-v~~l~~~ 103 (215)
+.||.|....++.|.++ |. +.+.++.| |....+.+.+.|+. ++..+.+
T Consensus 211 i~TG~Tl~~aa~~Lk~~---Ga-~~I~~~~tH~v~~~~a~~~l~~~~~~~i~~t~ti 263 (304)
T PRK03092 211 IDTGGTIAGAVRALKEA---GA-KDVIIAATHGVLSGPAAERLKNCGAREVVVTDTL 263 (304)
T ss_pred cCcHHHHHHHHHHHHhc---CC-CeEEEEEEcccCChHHHHHHHHCCCCEEEEeeee
Confidence 68999999999998764 32 35777775 66666667777777 3334444
No 181
>KOG0886 consensus 40S ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=25.08 E-value=42 Score=27.99 Aligned_cols=56 Identities=20% Similarity=0.225 Sum_probs=36.7
Q ss_pred eeEEEccccHHHHHHHHhcchhcCCCceeecc--eeEecCCCEEEeecCC--CCCCCHHHHHHHHccc
Q 036939 122 VPVEVVPVCWKFTANRFPDLFKDCGCVAKLRT--CYEKHNGNCIIDLYFK--KDIGDMEVASNRILRL 185 (215)
Q Consensus 122 lPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR~--p~vTDnGN~IlD~~f~--~~i~dp~~l~~~L~~i 185 (215)
--+||+|.+...+++.|++- ++=|. --+..|||.-+|-..+ . +.-+..++++|...
T Consensus 71 A~i~VvpSasaLiIkaLKEP-------pRDRKk~knikh~Gni~~deiv~iar-~mr~rS~a~~l~gt 130 (167)
T KOG0886|consen 71 AQIEVVPSASALIIKALKEP-------PRDRKKQKNIKHSGNITFDEIVEIAR-IMRPRSLARELSGT 130 (167)
T ss_pred cceEEcccHHHHHHHHhcCC-------cchhhhhccccccCcccHHHHHHHHH-HhhhHhhhhhhhhh
Confidence 46899999999999999984 33344 6788999976653221 1 22345555555433
No 182
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=25.07 E-value=4.4e+02 Score=22.58 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=30.9
Q ss_pred cCcCCCEE-EeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 43 FVKSGMVV-GLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 43 ~V~~g~vI-GLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
.+++|+.| =.|.++.+-.++-.+++. .| . .+.++++|.+-...++++|..
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~--~G-~-~vi~~~~s~~~~~~l~~~Ga~ 190 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKI--KG-C-KVIGCAGSDDKVAWLKELGFD 190 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHH--cC-C-EEEEEeCCHHHHHHHHHcCCC
Confidence 36788755 556444455554445442 12 3 366677777777888889975
No 183
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=25.01 E-value=1.2e+02 Score=24.67 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=25.6
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS 83 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS 83 (215)
+...++=+|+|......++.|.+ .| - ++++|+..
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~---~g-a-~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKD---TG-A-FVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh---CC-C-EEEEEcCc
Confidence 45678899999999988888865 23 2 69999543
No 184
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=24.86 E-value=2.4e+02 Score=24.20 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhcCcCCC-E--EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHH
Q 036939 29 QDELKKIAANKSVEFVKSGM-V--VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVS 92 (215)
Q Consensus 29 ~~~~K~~aA~~A~~~V~~g~-v--IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~ 92 (215)
.+..-+.++..+..++.++. + ||-|+|.....+++.+.. .+. .+++|=.|......+++
T Consensus 39 y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~----~~~-~v~gvD~S~~ml~~A~~ 100 (247)
T PRK15451 39 YSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHH----DNC-KIIAIDNSPAMIERCRR 100 (247)
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCC----CCC-eEEEEeCCHHHHHHHHH
Confidence 34444455555556676665 3 677888877666554321 122 58899999988777754
No 185
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=24.85 E-value=3.6e+02 Score=23.58 Aligned_cols=75 Identities=13% Similarity=0.074 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHH---HHHHHHCCCCeeecCCCCc
Q 036939 29 QDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT---HDQAVSLGIPLSDLDSHPV 105 (215)
Q Consensus 29 ~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t---~~~~~~~Gi~v~~l~~~~~ 105 (215)
+.+.-+.+++...+-+.....+-+=||+-...++...... +.+ + +++.|-.| -++|+++||.++-.-.-++
T Consensus 152 HNAlDK~iG~~ll~g~~~~~~~l~~SGRis~emv~Ka~~a----GIp-v-lvS~sapT~lavelA~~~giTLigf~R~~r 225 (237)
T TIGR00129 152 HNAVDKLIGSALLNGANLRKGFILYSGRISSEMVQKAARC----GVP-I-IASKSAPTDLAIEVAEESNITLIGFARNGR 225 (237)
T ss_pred HHHHHHHHHHHHHcCCCccCcEEEEeCCCcHHHHHHHHHc----CCC-E-EEEcccchHHHHHHHHHhCCEEEEEecCCc
Confidence 5667777888888766655566677888888887776532 232 2 23333222 3678888999887655556
Q ss_pred eeEE
Q 036939 106 IDLA 109 (215)
Q Consensus 106 iDl~ 109 (215)
+.+|
T Consensus 226 ~~vY 229 (237)
T TIGR00129 226 FNIY 229 (237)
T ss_pred eEEe
Confidence 6655
No 186
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=24.81 E-value=15 Score=26.18 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=17.3
Q ss_pred HHhcchhcCCCceeecc--eeEecCCCEE
Q 036939 137 RFPDLFKDCGCVAKLRT--CYEKHNGNCI 163 (215)
Q Consensus 137 ~l~~l~~~~G~~~~lR~--p~vTDnGN~I 163 (215)
+|+++|.+.+..+..|. |++.+++..|
T Consensus 22 ~lKk~~~e~kIP~~~R~~~Pll~~~~~iv 50 (74)
T PF11734_consen 22 KLKKLFQEAKIPPWQRDRLPLLCDGGEIV 50 (74)
T ss_dssp EHHHHHHHCT--HHHCCCSEEEEETTEEE
T ss_pred hHHHHHHHcCCCHHHHCcEEEEEECCEEE
Confidence 35555555688777886 9999977543
No 187
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=24.76 E-value=4.7e+02 Score=22.75 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=29.2
Q ss_pred cCcCCCEEEe-CcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 43 FVKSGMVVGL-GTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 43 ~V~~g~vIGL-GsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
.+++|..|-+ |+|+ +.+++-.+++.. | .+.+.++++|......++++|..
T Consensus 156 ~~~~~~~vlI~g~g~-~g~~~~~lA~~~--G-~~~v~~~~~~~~~~~~l~~~g~~ 206 (343)
T cd08236 156 GITLGDTVVVIGAGT-IGLLAIQWLKIL--G-AKRVIAVDIDDEKLAVARELGAD 206 (343)
T ss_pred CCCCCCEEEEECCCH-HHHHHHHHHHHc--C-CCEEEEEcCCHHHHHHHHHcCCC
Confidence 3567764444 7655 455544555431 2 32277777777777777888864
No 188
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=24.66 E-value=98 Score=25.98 Aligned_cols=50 Identities=16% Similarity=0.233 Sum_probs=30.8
Q ss_pred eCcChhHHHHHHHHHhHHhcCCCCCEEE-ecCcHHHHHHHHHCCCCeeecCCC
Q 036939 52 LGTDSTATHAVDKIGELLHQGKLKNIVG-IPTSKTTHDQAVSLGIPLSDLDSH 103 (215)
Q Consensus 52 LGsGSTv~~~i~~L~~~~~~~~l~~i~~-V~tS~~t~~~~~~~Gi~v~~l~~~ 103 (215)
+.||+|+...++.|.+.-. ...++.+ |--.......++++|+++.++-..
T Consensus 123 i~tG~Tl~~~~~~l~~~Ga--~~v~~~vlv~~~~~~~~~~~~~g~~~~sl~~~ 173 (202)
T PRK00455 123 ITTGGSVLEAVEAIRAAGA--EVVGVAVIVDRQSAAQEVFADAGVPLISLITL 173 (202)
T ss_pred cCCcHHHHHHHHHHHHcCC--EEEEEEEEEECcchHHHHHHhcCCcEEEEeeH
Confidence 5799999999998875311 1112222 222233456677889998876554
No 189
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=24.56 E-value=2.1e+02 Score=24.58 Aligned_cols=61 Identities=18% Similarity=0.114 Sum_probs=46.1
Q ss_pred HHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeec
Q 036939 39 KSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDL 100 (215)
Q Consensus 39 ~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l 100 (215)
.+++.+...+-|-+=|..+|.+|.+++.....+ .+++.++.+=+..|+..++++|+.....
T Consensus 43 ~~l~~l~~~d~vvfTS~~av~~~~~~l~~~~~~-~~~~~~i~aVG~~Ta~~l~~~G~~~~~~ 103 (248)
T COG1587 43 VALEDLDSADWVVFTSPNAVRFFFEALKEQGLD-ALKNKKIAAVGEKTAEALRKLGIKVDFI 103 (248)
T ss_pred HHHhccccCCEEEEECHHHHHHHHHHHHhhccc-ccccCeEEEEcHHHHHHHHHhCCCCCcC
Confidence 344444447889999999999999999764332 3446778888999999999999886544
No 190
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=24.54 E-value=90 Score=22.68 Aligned_cols=41 Identities=15% Similarity=0.225 Sum_probs=26.6
Q ss_pred CcCCC-E--EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHH
Q 036939 44 VKSGM-V--VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAV 91 (215)
Q Consensus 44 V~~g~-v--IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~ 91 (215)
+.+++ + +|-|+|..+.+++++... . .++++-.|......++
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~------~-~v~~vD~s~~~~~~a~ 60 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPN------G-RVYAIERNPEALRLIE 60 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCC------c-eEEEEcCCHHHHHHHH
Confidence 44555 3 678888887777665321 2 4888888877766653
No 191
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=24.54 E-value=1.4e+02 Score=27.33 Aligned_cols=38 Identities=24% Similarity=0.456 Sum_probs=25.6
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHH
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH 87 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~ 87 (215)
+...+||+|+||..- +++.++-+. ++ .+..|||...|-
T Consensus 84 ~~d~IIavGGGsv~D-~aK~iA~~~---~~-p~i~IPTtagtg 121 (366)
T PRK09423 84 GCDVVIGIGGGKTLD-TAKAVADYL---GV-PVVIVPTIASTD 121 (366)
T ss_pred CCCEEEEecChHHHH-HHHHHHHHc---CC-CEEEeCCccccC
Confidence 456799999999764 346655322 25 588999965443
No 192
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=24.41 E-value=1.7e+02 Score=26.11 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcH
Q 036939 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSK 84 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~ 84 (215)
.++|+++.+.+++.++...-|-.|.|+++...++. +++.++-+...+-++|+.+
T Consensus 57 ~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~-a~~a~~~Gadav~~~pP~y 110 (296)
T TIGR03249 57 PAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEI-ARLAEKAGADGYLLLPPYL 110 (296)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHH-HHHHHHhCCCEEEECCCCC
Confidence 46778888888888876553333444445555554 3444444455677777754
No 193
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=24.28 E-value=1.2e+02 Score=30.75 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHhcCc-----CC-CEEEeCcChhHHHHHHHHHhHHhcCCC
Q 036939 28 TQDELKKIAANKSVEFVK-----SG-MVVGLGTDSTATHAVDKIGELLHQGKL 74 (215)
Q Consensus 28 ~~~~~K~~aA~~A~~~V~-----~g-~vIGLGsGSTv~~~i~~L~~~~~~~~l 74 (215)
+.+++-+.+|+..++.++ .+ -+|||.+|||-..+-+.|.+..+++.+
T Consensus 35 ~~ee~a~~vA~~I~~~I~~~~~~~~~~~laLsGGsTP~~~Y~~L~~~~~~~~l 87 (652)
T PRK02122 35 SSEEASRAVAQEIATLIRERQAEGKPCVLGLATGSSPIGVYAELIRMHREEGL 87 (652)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCcCHHHHHHHHHhhhhccCC
Confidence 456666666766666553 33 489999999999999999876555544
No 194
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=23.76 E-value=3.9e+02 Score=23.94 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=30.2
Q ss_pred cCcCCCE-EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 43 FVKSGMV-VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 43 ~V~~g~v-IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
.+++|.. +=.|+|..-..+++ +++. .| .+.+.++..+.+-..+++++|..
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~-lak~--~G-~~~Vi~~~~~~~r~~~a~~~Ga~ 238 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALL-GAVA--AG-ASQVVAVDLNEDKLALARELGAT 238 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHH-HHHH--cC-CCcEEEEcCCHHHHHHHHHcCCc
Confidence 3677763 33566654444444 4432 22 32466777777778888999975
No 195
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=23.64 E-value=70 Score=27.09 Aligned_cols=14 Identities=21% Similarity=0.071 Sum_probs=12.9
Q ss_pred eeEecCCCEEEeec
Q 036939 154 CYEKHNGNCIIDLY 167 (215)
Q Consensus 154 p~vTDnGN~IlD~~ 167 (215)
|.+++|||.++.+.
T Consensus 103 P~V~~nGnv~L~~~ 116 (187)
T PF09911_consen 103 PEVLENGNVQLKAK 116 (187)
T ss_pred EEEecCCcEEEEec
Confidence 99999999999874
No 196
>PLN02417 dihydrodipicolinate synthase
Probab=23.52 E-value=1.8e+02 Score=25.72 Aligned_cols=54 Identities=13% Similarity=-0.028 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc
Q 036939 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS 83 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS 83 (215)
.++|+++.+.+++.+.....|-.|.|++...-+-++++..++-+...+.++|+.
T Consensus 53 ~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~P~ 106 (280)
T PLN02417 53 WDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPY 106 (280)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 355666667778877654444455554322222333333333334445566553
No 197
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=23.50 E-value=1.6e+02 Score=24.46 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=26.7
Q ss_pred CcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHC-CCCeee
Q 036939 53 GTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL-GIPLSD 99 (215)
Q Consensus 53 GsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~-Gi~v~~ 99 (215)
|||-|. +++.+.+.+...+. .+.+++++...+..+++. |++...
T Consensus 28 GtGKT~--~l~~~~~~~~~~g~-~v~~~apT~~Aa~~L~~~~~~~a~T 72 (196)
T PF13604_consen 28 GTGKTT--LLKALAEALEAAGK-RVIGLAPTNKAAKELREKTGIEAQT 72 (196)
T ss_dssp TSTHHH--HHHHHHHHHHHTT---EEEEESSHHHHHHHHHHHTS-EEE
T ss_pred CCCHHH--HHHHHHHHHHhCCC-eEEEECCcHHHHHHHHHhhCcchhh
Confidence 788875 45666655555444 577777777777656554 877553
No 198
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=23.36 E-value=3.4e+02 Score=25.09 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=26.9
Q ss_pred cCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHH
Q 036939 43 FVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKT 85 (215)
Q Consensus 43 ~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~ 85 (215)
.=++..+||+|+||+.- +++.++....+| . ....|||+.-
T Consensus 74 ~~r~d~iIaiGGGsv~D-~ak~vA~~~~rg-i-~~i~iPTTll 113 (346)
T cd08196 74 ARRNTHLVAIGGGIIQD-VTTFVASIYMRG-V-SWSFVPTTLL 113 (346)
T ss_pred CCCCcEEEEECChHHHH-HHHHHHHHHHcC-C-CeEEecccHH
Confidence 34567899999999864 346665444444 3 4777899664
No 199
>PF14903 WG_beta_rep: WG containing repeat
Probab=23.35 E-value=87 Score=18.15 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=13.8
Q ss_pred eEecCCCEEEeecCCC
Q 036939 155 YEKHNGNCIIDLYFKK 170 (215)
Q Consensus 155 ~vTDnGN~IlD~~f~~ 170 (215)
++..+||.|++..|+.
T Consensus 3 ~id~~G~~vi~~~yd~ 18 (35)
T PF14903_consen 3 YIDKNGKIVIPPKYDE 18 (35)
T ss_pred EEeCCCCEEEEccccC
Confidence 6788999999998875
No 200
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=23.29 E-value=3.2e+02 Score=24.04 Aligned_cols=61 Identities=13% Similarity=0.220 Sum_probs=41.3
Q ss_pred HHHHHHHhcCcCCC-EEEeCcChh---------------HHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 35 IAANKSVEFVKSGM-VVGLGTDST---------------ATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 35 ~aA~~A~~~V~~g~-vIGLGsGST---------------v~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
.+.+.|.+++++|. +|=+|.-|| +..+++.+.++. .. .+.+=+.+.++.+.|-+.|.+++
T Consensus 24 ~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~---~~-plsiDT~~~~vi~~al~~G~~iI 99 (257)
T TIGR01496 24 KAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP---DV-PISVDTYRAEVARAALEAGADII 99 (257)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC---CC-eEEEeCCCHHHHHHHHHcCCCEE
Confidence 35567777888884 888886666 445555543221 24 36677888888888888898876
Q ss_pred e
Q 036939 99 D 99 (215)
Q Consensus 99 ~ 99 (215)
.
T Consensus 100 N 100 (257)
T TIGR01496 100 N 100 (257)
T ss_pred E
Confidence 3
No 201
>PRK13753 dihydropteroate synthase; Provisional
Probab=23.18 E-value=4.3e+02 Score=23.95 Aligned_cols=63 Identities=16% Similarity=0.176 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCcCC-CEEEeCcChh------------HHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 34 KIAANKSVEFVKSG-MVVGLGTDST------------ATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 34 ~~aA~~A~~~V~~g-~vIGLGsGST------------v~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
..+.++|.+++++| .+|=+|.-|| ...++..+.. +++... .+-+=|....+++.|-++|..++
T Consensus 25 d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~-l~~~~~-~ISIDT~~~~va~~al~aGadiI 100 (279)
T PRK13753 25 AGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDA-LSDQMH-RVSIDSFQPETQRYALKRGVGYL 100 (279)
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHH-HHhCCC-cEEEECCCHHHHHHHHHcCCCEE
Confidence 44567788899998 5999999998 3322233322 222222 36666777788888888998866
No 202
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=23.13 E-value=5.2e+02 Score=22.78 Aligned_cols=57 Identities=18% Similarity=0.071 Sum_probs=33.0
Q ss_pred HHHHHHhc--CcCCCE-EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 36 AANKSVEF--VKSGMV-VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 36 aA~~A~~~--V~~g~v-IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
.|..|+.. ..+|.. +=.|+|+.=.++++ ++.. .| .+.+.++..|.+-..+++++|..
T Consensus 157 ~a~~al~~~~~~~g~~VlV~G~G~vG~~aiq-lak~--~G-~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 157 VAIHAAHQAGDLQGKRVFVSGVGPIGCLIVA-AVKT--LG-AAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCHHHHHHHH-HHHH--cC-CcEEEEEeCCHHHHHHHHHcCCc
Confidence 34445542 345664 33577655555554 4332 12 22466677787778889999976
No 203
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=23.03 E-value=4.6e+02 Score=22.75 Aligned_cols=50 Identities=26% Similarity=0.299 Sum_probs=29.3
Q ss_pred cCcCCCEE-EeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 43 FVKSGMVV-GLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 43 ~V~~g~vI-GLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
.+++|..| =.|.++.+-.++-.+++. .| . .+.++.+|.+-...++++|..
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~--~G-~-~Vi~~~~s~~~~~~~~~lGa~ 185 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKL--KG-C-KVVGAAGSDEKVAYLKKLGFD 185 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHH--cC-C-EEEEEeCCHHHHHHHHHcCCC
Confidence 46788765 446434444444445432 22 3 355566676667778889875
No 204
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=22.90 E-value=4.5e+02 Score=21.97 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=20.4
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhH
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGEL 68 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~ 68 (215)
+.|.++-+||-.-...+++..+++
T Consensus 55 ~~g~iLfV~t~~~~~~~v~~~a~~ 78 (193)
T cd01425 55 KGGKILFVGTKPQAQRAVKKFAER 78 (193)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHH
Confidence 578899999999888888888765
No 205
>PRK05114 hypothetical protein; Provisional
Probab=22.88 E-value=26 Score=24.71 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=26.2
Q ss_pred HHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHh
Q 036939 38 NKSVEFVKSGMVVGLGTDSTATHAVDKIGELLH 70 (215)
Q Consensus 38 ~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~ 70 (215)
++|++.|+.=|.=|+.||-.+..++++|.+.-.
T Consensus 14 Q~AVErIq~LMaqGmSsgEAI~~VA~eiRe~~~ 46 (59)
T PRK05114 14 QKAVERIQELMAQGMSSGEAIALVAEELRANHQ 46 (59)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHh
Confidence 456677777777788999999999999976543
No 206
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=22.88 E-value=1.6e+02 Score=26.76 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=27.2
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHH
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQA 90 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~ 90 (215)
+...+||+|+||..- .++.++... ++ .+..|||..-|-.++
T Consensus 77 ~~d~IIavGGGs~~D-~aK~ia~~~---~~-p~i~VPTtagtgse~ 117 (349)
T cd08550 77 EADVIIGVGGGKTLD-TAKAVADRL---DK-PIVIVPTIASTCAAS 117 (349)
T ss_pred CCCEEEEecCcHHHH-HHHHHHHHc---CC-CEEEeCCccccCccc
Confidence 556899999999764 346665432 24 588999976554433
No 207
>cd03769 SR_IS607_transposase_like Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.
Probab=22.86 E-value=3.7e+02 Score=20.97 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHhcCcCCCEEE----eCcChhH-HHHHHHHHhHHhcCCCCCEEEecCcH--------HHHHHHHHCC
Q 036939 28 TQDELKKIAANKSVEFVKSGMVVG----LGTDSTA-THAVDKIGELLHQGKLKNIVGIPTSK--------TTHDQAVSLG 94 (215)
Q Consensus 28 ~~~~~K~~aA~~A~~~V~~g~vIG----LGsGSTv-~~~i~~L~~~~~~~~l~~i~~V~tS~--------~t~~~~~~~G 94 (215)
+.+..++.+-+.|.+. +.++. -|||++. .--.++|-+.++.|.. +..+|..-. ....+++++|
T Consensus 15 ~l~~Q~~~l~~~a~~~---~~~~~if~D~~SG~~~~Rp~l~~ll~~i~~g~~-d~lvV~~ldRl~R~~~d~~~~~l~~~g 90 (134)
T cd03769 15 DLERQIERLEAYATAQ---GWIVEVIKDIGSGLNEKRKGLLKLLEDVLAGKV-ERVVITYKDRLARFGFELLEELFKAYG 90 (134)
T ss_pred CHHHHHHHHHHHHHHc---CCeEEEEEecCCccccCCHHHHHHHHHHHcCCC-CEEEEEeccHHHHhhHHHHHHHHHHCC
Confidence 4555666666665543 22222 3578765 2233444455677765 466665322 1224577889
Q ss_pred CCeeecCC
Q 036939 95 IPLSDLDS 102 (215)
Q Consensus 95 i~v~~l~~ 102 (215)
+.++.+.+
T Consensus 91 v~l~~~~~ 98 (134)
T cd03769 91 VEIVVINQ 98 (134)
T ss_pred CEEEEEeC
Confidence 99887764
No 208
>PRK06988 putative formyltransferase; Provisional
Probab=22.86 E-value=2.1e+02 Score=25.96 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=33.6
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCc----------HHHHHHHHHCCCCeeec
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS----------KTTHDQAVSLGIPLSDL 100 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS----------~~t~~~~~~~Gi~v~~l 100 (215)
++-+||+......++.|.+. + . ++.+|=|. .....+|+++||++...
T Consensus 5 Ivf~Gs~~~a~~~L~~L~~~---~-~-~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~ 61 (312)
T PRK06988 5 AVVFAYHNVGVRCLQVLLAR---G-V-DVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITP 61 (312)
T ss_pred EEEEeCcHHHHHHHHHHHhC---C-C-CEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEcc
Confidence 78899999888888888642 2 2 34444332 25678999999998753
No 209
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=22.75 E-value=3.3e+02 Score=24.29 Aligned_cols=57 Identities=11% Similarity=0.071 Sum_probs=37.9
Q ss_pred CCEEEeCcChhHHHHHHHHHhHHhcCCC-CCEEEecCc-----------HHHHHHHHHCCCCeeecCCC
Q 036939 47 GMVVGLGTDSTATHAVDKIGELLHQGKL-KNIVGIPTS-----------KTTHDQAVSLGIPLSDLDSH 103 (215)
Q Consensus 47 g~vIGLGsGSTv~~~i~~L~~~~~~~~l-~~i~~V~tS-----------~~t~~~~~~~Gi~v~~l~~~ 103 (215)
..++=+|+|-+-.+++..|.++.++.+. .+++++..+ ......++++|+++..-..+
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v 214 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPV 214 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeCCcccccCCHHHHHHHHHHHHHCCCEEEeCCee
Confidence 3677789999999999999876543222 267777332 23345678889987743333
No 210
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=22.70 E-value=71 Score=24.36 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=32.6
Q ss_pred CCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHH--HHHHHHCCCCe
Q 036939 46 SGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT--HDQAVSLGIPL 97 (215)
Q Consensus 46 ~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t--~~~~~~~Gi~v 97 (215)
+=.+|=+|||.+...+-+++.+.+++.+. ++.+.+|..+. ...+.+.|=++
T Consensus 53 ~pe~liiGtG~~~~~~~~~~~~~l~~~GI-~ve~m~T~~Ac~tyN~L~~EgR~V 105 (110)
T PF04430_consen 53 KPEVLIIGTGKRQLFLPPELREYLRKKGI-GVEVMDTPAACRTYNILASEGRRV 105 (110)
T ss_dssp S-SEEEEEETTS-SECTHHHHHHHHTTT--EEEEE-HHHHHHHHHHHHHTTC-E
T ss_pred CCcEEEEccCCccccCCHHHHHHHHHcCC-eEEEECHHHHHHHHHHHHhCCccE
Confidence 44799999999988888888888876655 46666665443 35666655443
No 211
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=22.58 E-value=3.2e+02 Score=24.53 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=35.0
Q ss_pred CCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHH-HHHHHHCCCCeee
Q 036939 46 SGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT-HDQAVSLGIPLSD 99 (215)
Q Consensus 46 ~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t-~~~~~~~Gi~v~~ 99 (215)
...++=+|+|.....+++.|..+ | ..+++++..+.+. ..+++++|....+
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~---g-~~~V~v~~r~~~ra~~la~~~g~~~~~ 228 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAK---G-VAEITIANRTYERAEELAKELGGNAVP 228 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHc---C-CCEEEEEeCCHHHHHHHHHHcCCeEEe
Confidence 33466689999999999988642 2 2368888887664 4677777865443
No 212
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=22.51 E-value=1.3e+02 Score=27.18 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhc-----Cc---CCC-E--EEeCcChhHHHHHHHHHhHHhcCCC-CCEEEe-cCcHHHHHHHHHCCC
Q 036939 29 QDELKKIAANKSVEF-----VK---SGM-V--VGLGTDSTATHAVDKIGELLHQGKL-KNIVGI-PTSKTTHDQAVSLGI 95 (215)
Q Consensus 29 ~~~~K~~aA~~A~~~-----V~---~g~-v--IGLGsGSTv~~~i~~L~~~~~~~~l-~~i~~V-~tS~~t~~~~~~~Gi 95 (215)
.++++......|.++ ++ +-| + .+=|+||+...++++. ++|.+ ..|.+| ++......+|+++||
T Consensus 63 ~~~L~~~L~~l~~~l~l~i~i~~~~~~~ri~vl~Sg~g~nl~al~~~~----~~~~~~~~i~~visn~~~~~~lA~~~gI 138 (286)
T PRK13011 63 EDALRAGFAPIAARFGMQWELHDPAARPKVLIMVSKFDHCLNDLLYRW----RIGELPMDIVGVVSNHPDLEPLAAWHGI 138 (286)
T ss_pred HHHHHHHHHHHHHHhCcEEEEeecccCceEEEEEcCCcccHHHHHHHH----HcCCCCcEEEEEEECCccHHHHHHHhCC
Confidence 456666555555542 22 223 2 3445666665555554 45544 246665 545567778999999
Q ss_pred Ceeec
Q 036939 96 PLSDL 100 (215)
Q Consensus 96 ~v~~l 100 (215)
|+..+
T Consensus 139 p~~~~ 143 (286)
T PRK13011 139 PFHHF 143 (286)
T ss_pred CEEEe
Confidence 97643
No 213
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.45 E-value=1.7e+02 Score=26.48 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHh-----cCc---CCCE---EEeCcChhHHHHHHHHHhHHhcCCCC-CEEEe-cCcHHHHHHHHHCCC
Q 036939 29 QDELKKIAANKSVE-----FVK---SGMV---VGLGTDSTATHAVDKIGELLHQGKLK-NIVGI-PTSKTTHDQAVSLGI 95 (215)
Q Consensus 29 ~~~~K~~aA~~A~~-----~V~---~g~v---IGLGsGSTv~~~i~~L~~~~~~~~l~-~i~~V-~tS~~t~~~~~~~Gi 95 (215)
.++++++.+..+.+ .++ .-+. ..=|+||+...++++. ++|.+. .|.+| ++......+|+++||
T Consensus 67 ~~~l~~~l~~l~~~l~l~~~i~~~~~~~kiavl~Sg~g~nl~al~~~~----~~~~l~~~i~~visn~~~~~~~A~~~gI 142 (289)
T PRK13010 67 VDTFRQEFQPVAEKFDMQWAIHPDGQRPKVVIMVSKFDHCLNDLLYRW----RMGELDMDIVGIISNHPDLQPLAVQHDI 142 (289)
T ss_pred HHHHHHHHHHHHHHhCCeEEEecCCCCeEEEEEEeCCCccHHHHHHHH----HCCCCCcEEEEEEECChhHHHHHHHcCC
Confidence 45555555544444 222 2233 4458888887777765 445542 45554 455466788899999
Q ss_pred Ceeec
Q 036939 96 PLSDL 100 (215)
Q Consensus 96 ~v~~l 100 (215)
|...+
T Consensus 143 p~~~~ 147 (289)
T PRK13010 143 PFHHL 147 (289)
T ss_pred CEEEe
Confidence 98754
No 214
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=22.38 E-value=2.6e+02 Score=23.99 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=34.6
Q ss_pred CCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHH----HHHHHCCC
Q 036939 46 SGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH----DQAVSLGI 95 (215)
Q Consensus 46 ~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~----~~~~~~Gi 95 (215)
+-..|.+|+|-+...+++.+.++++.|+. +..=....+++ +..+++|.
T Consensus 102 ~~daiFIGGg~~i~~ile~~~~~l~~ggr--lV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 102 SPDAIFIGGGGNIEEILEAAWERLKPGGR--LVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHcCcCCe--EEEEeecHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999887652 43433344444 34466677
No 215
>PRK08507 prephenate dehydrogenase; Validated
Probab=22.24 E-value=2.7e+02 Score=24.21 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=29.3
Q ss_pred eCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 52 LGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 52 LGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
+|.|.--..+++.|.+. |.-..++++..+.+....+.+.|+.
T Consensus 6 IG~G~mG~sla~~l~~~---g~~~~v~~~d~~~~~~~~~~~~g~~ 47 (275)
T PRK08507 6 IGLGLMGGSLGLALKEK---GLISKVYGYDHNELHLKKALELGLV 47 (275)
T ss_pred EccCHHHHHHHHHHHhc---CCCCEEEEEcCCHHHHHHHHHCCCC
Confidence 48888888888887642 3212477778888777777787763
No 216
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=22.18 E-value=2e+02 Score=25.09 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=27.7
Q ss_pred eCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCC
Q 036939 52 LGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGI 95 (215)
Q Consensus 52 LGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi 95 (215)
+|.|.--..++..|.++ | . .+.++..+.+....+.+.|.
T Consensus 6 IG~G~mG~sla~~L~~~---g-~-~V~~~d~~~~~~~~a~~~g~ 44 (279)
T PRK07417 6 VGLGLIGGSLGLDLRSL---G-H-TVYGVSRRESTCERAIERGL 44 (279)
T ss_pred EeecHHHHHHHHHHHHC---C-C-EEEEEECCHHHHHHHHHCCC
Confidence 37777666677777542 3 3 58889988888888877764
No 217
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=22.02 E-value=4.6e+02 Score=22.59 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=28.2
Q ss_pred CcCCCEEE-eCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCC
Q 036939 44 VKSGMVVG-LGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIP 96 (215)
Q Consensus 44 V~~g~vIG-LGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~ 96 (215)
+++|..|- .|+|+....+++ +++. .+.+.+.++++|.+....++++|..
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~-la~~---~G~~~v~~~~~~~~~~~~~~~~g~~ 206 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQ-LLKL---NGASRVTVAEPNEEKLELAKKLGAT 206 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHH-HHHH---cCCcEEEEECCCHHHHHHHHHhCCe
Confidence 45565444 466554444444 4332 2232366777787777778888874
No 218
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=22.00 E-value=60 Score=32.89 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHHHh-cC---------cCCCEEEeCcChhHHHH
Q 036939 27 LTQDELKKIAANKSVE-FV---------KSGMVVGLGTDSTATHA 61 (215)
Q Consensus 27 ~~~~~~K~~aA~~A~~-~V---------~~g~vIGLGsGSTv~~~ 61 (215)
.++++++|.|+-.+++ || +.+. +|+|+|.|..+-
T Consensus 416 ~th~earreagl~gie~y~~~~~~~~~~~~~~-~~ig~get~~e~ 459 (637)
T TIGR03693 416 LTHNEARREAGLTGIEMYAAEILHRLIPEHGD-FAIAAGETLAEG 459 (637)
T ss_pred cchHHHHHhhchhhHHHHHHHHHHhhcCcccC-ceeecchhHHHH
Confidence 4689999999988877 33 3344 999999998753
No 219
>PF08407 Chitin_synth_1N: Chitin synthase N-terminal; InterPro: IPR013616 This is the N-terminal domain of Chitin synthase (IPR004834 from INTERPRO). ; GO: 0004100 chitin synthase activity
Probab=21.71 E-value=51 Score=24.46 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=10.1
Q ss_pred CCCEEEeecCCC
Q 036939 159 NGNCIIDLYFKK 170 (215)
Q Consensus 159 nGN~IlD~~f~~ 170 (215)
|||+|+|+..++
T Consensus 13 ~Gnlv~D~PVP~ 24 (79)
T PF08407_consen 13 NGNLVLDCPVPS 24 (79)
T ss_pred cCcEEEECcCCH
Confidence 999999997653
No 220
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=21.64 E-value=1.2e+02 Score=21.90 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=24.1
Q ss_pred EEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHH
Q 036939 50 VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVS 92 (215)
Q Consensus 50 IGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~ 92 (215)
||-|+|+...++++.- ... .+++|=.|......+++
T Consensus 8 lGcG~G~~~~~l~~~~------~~~-~v~gvD~s~~~~~~a~~ 43 (112)
T PF12847_consen 8 LGCGTGRLSIALARLF------PGA-RVVGVDISPEMLEIARE 43 (112)
T ss_dssp ETTTTSHHHHHHHHHH------TTS-EEEEEESSHHHHHHHHH
T ss_pred EcCcCCHHHHHHHhcC------CCC-EEEEEeCCHHHHHHHHH
Confidence 6778888887777621 123 48888888777766643
No 221
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=21.62 E-value=1.7e+02 Score=25.17 Aligned_cols=48 Identities=23% Similarity=0.209 Sum_probs=31.9
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCC-CEEEecCc---HHHHHHHHHCCCCeeec
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLK-NIVGIPTS---KTTHDQAVSLGIPLSDL 100 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~-~i~~V~tS---~~t~~~~~~~Gi~v~~l 100 (215)
++.=|+||+...+++++. ++.+. .+.+|=++ ......|+++|||+...
T Consensus 4 vl~Sg~Gsn~~al~~~~~----~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~ 55 (207)
T PLN02331 4 VFVSGGGSNFRAIHDACL----DGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVY 55 (207)
T ss_pred EEEeCCChhHHHHHHHHH----cCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEe
Confidence 345599999988888764 34442 35454444 34458899999998754
No 222
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=21.49 E-value=1.8e+02 Score=25.31 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHhcCc------CC-CEEEeCcChhHHHHHHHHHhHHhcC
Q 036939 28 TQDELKKIAANKSVEFVK------SG-MVVGLGTDSTATHAVDKIGELLHQG 72 (215)
Q Consensus 28 ~~~~~K~~aA~~A~~~V~------~g-~vIGLGsGSTv~~~i~~L~~~~~~~ 72 (215)
+.+++=+.+|+...+.++ .+ -+|+|-+|||-..+-+.|++...++
T Consensus 8 ~~~~~~~~~a~~i~~~i~~~~~~~~~~~~i~lsgG~tP~~~y~~L~~~~~~~ 59 (253)
T PTZ00285 8 DADAVADYTSNYIIKRINDFKPTSDRPFVLGLPTGSTPLPTYQELIRAYREG 59 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEcCCCCHHHHHHHHHHHHhhc
Confidence 344554555555555442 23 4899999999999999998765444
No 223
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=21.30 E-value=1.1e+02 Score=25.27 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=30.9
Q ss_pred eCcChhHHHHHHHHHhHHhcCCCCC-EEEecCcHHHHHHHHHCCCCeeecCCC
Q 036939 52 LGTDSTATHAVDKIGELLHQGKLKN-IVGIPTSKTTHDQAVSLGIPLSDLDSH 103 (215)
Q Consensus 52 LGsGSTv~~~i~~L~~~~~~~~l~~-i~~V~tS~~t~~~~~~~Gi~v~~l~~~ 103 (215)
+-||+|+...++.|.+.- ++..+ +.+|--+...+..++++|+|+.++-..
T Consensus 114 i~TG~T~~~~~~~l~~~G--a~v~~~~~~vdr~~g~~~~l~~~gv~~~sl~~~ 164 (170)
T PRK13811 114 TTSGGSALYGIEQLRAAG--AVVDDVVTVVDREQGAEELLAELGITLTPLVRV 164 (170)
T ss_pred ccccHHHHHHHHHHHHCC--CeEEEEEEEEECCccHHHHHHhcCCcEEEEeEH
Confidence 579999999999886531 11112 222333434455667789998877543
No 224
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=21.26 E-value=3.5e+02 Score=26.21 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHh------cCcCCCEEEeCcChhHHHHHHHHHhHHhcCC
Q 036939 31 ELKKIAANKSVE------FVKSGMVVGLGTDSTATHAVDKIGELLHQGK 73 (215)
Q Consensus 31 ~~K~~aA~~A~~------~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~ 73 (215)
.-...+|+.|++ |.++|-..--|||-....+.+.|.+..++.+
T Consensus 252 PreLlIA~~aa~VI~~SgYFkdGFs~QTGtGGAsLaVtrfl~ekM~~~n 300 (513)
T COG3051 252 PRELLIARSAADVIVNSGYFKDGFSMQTGTGGASLAVTRFLEEKMRRRN 300 (513)
T ss_pred hHHHHHHHHHhhhhhcCCcccCceeeecCCCchhHHHHHHHHHHHHhhc
Confidence 334567888887 5589999999999998888888877655443
No 225
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=20.81 E-value=1.2e+02 Score=30.48 Aligned_cols=51 Identities=16% Similarity=0.085 Sum_probs=37.9
Q ss_pred CEEEeCcChhHHHHHHHHHhHHhc---CCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 48 MVVGLGTDSTATHAVDKIGELLHQ---GKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 48 ~vIGLGsGSTv~~~i~~L~~~~~~---~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
..|-+-|++++..|.+...+.+.. ..++++.+|+.|..|+..|+++|+..+
T Consensus 195 dav~fTS~s~v~~f~~la~~~l~~~~~~~l~~~~ivaIgprtA~~a~~~G~~~i 248 (656)
T PRK06975 195 HAWLLTSSEAVRNLDELARAHLNPAEIDALKHAPLVAPHARIAEQARALGFDRI 248 (656)
T ss_pred cEEEECCHHHHHHHHHHHHhhcCHHHHHHHhCCeEEEeCHHHHHHHHHcCCCee
Confidence 567899999999998863221100 113467889999999999999998854
No 226
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=20.80 E-value=2.9e+02 Score=27.48 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=34.9
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCCCEE-EecCcH---------HHHHHHHHCCCCeeecCC
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLKNIV-GIPTSK---------TTHDQAVSLGIPLSDLDS 102 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~-~V~tS~---------~t~~~~~~~Gi~v~~l~~ 102 (215)
+|.+||+.-....+++|.+ .+ . ++. +++... ....+|+++|||+.....
T Consensus 3 ivf~g~~~~a~~~l~~L~~---~~-~-~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~ 61 (660)
T PRK08125 3 AVVFAYHDIGCVGIEALLA---AG-Y-EIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPED 61 (660)
T ss_pred EEEECCCHHHHHHHHHHHH---CC-C-cEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCC
Confidence 6889999999999998864 22 2 455 443221 467899999999875443
No 227
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=20.77 E-value=6.7e+02 Score=24.71 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=36.4
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCee
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLS 98 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~ 98 (215)
.+..++=+|.|..=...+..+..+ |. .++++-.+....++++++|....
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l---GA--~V~a~D~~~~rle~aeslGA~~v 212 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL---GA--IVRAFDTRPEVAEQVESMGAEFL 212 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC---CC--EEEEEeCCHHHHHHHHHcCCeEE
Confidence 344577889998887777766432 32 48888899999999999998743
No 228
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=20.72 E-value=2e+02 Score=21.52 Aligned_cols=51 Identities=10% Similarity=0.143 Sum_probs=31.9
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCC
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDS 102 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~ 102 (215)
+.+.||+-.+.=++- |++.+++.+ +++++. ++...+..+++.|++...+..
T Consensus 3 i~~~Gt~Ghv~P~la-la~~L~~rG-h~V~~~-~~~~~~~~v~~~Gl~~~~~~~ 53 (139)
T PF03033_consen 3 IATGGTRGHVYPFLA-LARALRRRG-HEVRLA-TPPDFRERVEAAGLEFVPIPG 53 (139)
T ss_dssp EEEESSHHHHHHHHH-HHHHHHHTT--EEEEE-ETGGGHHHHHHTT-EEEESSS
T ss_pred EEEcCChhHHHHHHH-HHHHHhccC-CeEEEe-ecccceecccccCceEEEecC
Confidence 467889988877663 444444322 257744 445566667999999887654
No 229
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=20.71 E-value=2.5e+02 Score=22.50 Aligned_cols=34 Identities=24% Similarity=0.157 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCcCCCEEE----eCcChhHHHHHHHHHhHH
Q 036939 34 KIAANKSVEFVKSGMVVG----LGTDSTATHAVDKIGELL 69 (215)
Q Consensus 34 ~~aA~~A~~~V~~g~vIG----LGsGSTv~~~i~~L~~~~ 69 (215)
++.|++-++.+++|++|. +|+|-|+ |++.+++.+
T Consensus 9 ~~l~~~l~~~l~~~~~i~l~G~lGaGKTt--l~~~l~~~l 46 (133)
T TIGR00150 9 DKFGKAFAKPLDFGTVVLLKGDLGAGKTT--LVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHhCCCCCEEEEEcCCCCCHHH--HHHHHHHHc
Confidence 345666667889999886 5899876 557776543
No 230
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=20.61 E-value=2.2e+02 Score=25.83 Aligned_cols=36 Identities=14% Similarity=0.322 Sum_probs=24.7
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHH
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKT 85 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~ 85 (215)
+...+|++|+||..- +++.++- .+ ++ .+..|||...
T Consensus 80 ~~d~IIaiGGGsv~D-~aK~iA~-~~--gi-p~I~VPTT~~ 115 (332)
T cd08549 80 DTEFLLGIGSGTIID-LVKFVSF-KV--GK-PFISVPTAPS 115 (332)
T ss_pred CCCEEEEECCcHHHH-HHHHHHH-Hc--CC-CEEEeCCCcc
Confidence 777899999999664 3455552 22 24 5888998763
No 231
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=20.61 E-value=2.5e+02 Score=27.29 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=40.2
Q ss_pred CCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeee
Q 036939 46 SGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSD 99 (215)
Q Consensus 46 ~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~ 99 (215)
++.+|=+|.|..-..++++|.++ +. ++.+|-.+.+..+.+++.|.+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~----g~-~vvvId~d~~~~~~~~~~g~~~i~ 465 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA----GI-PLVVIETSRTRVDELRERGIRAVL 465 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC----CC-CEEEEECCHHHHHHHHHCCCeEEE
Confidence 36788899999999999988653 23 699999998888889999988774
No 232
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=20.53 E-value=4.4e+02 Score=21.30 Aligned_cols=56 Identities=23% Similarity=0.172 Sum_probs=34.8
Q ss_pred HHHHHHhcCcCCC----EEEeCcChhHHHHHHHHHhHHhcCCCCCEEE-ecCcHHHHHHHHHC-CCCeeec
Q 036939 36 AANKSVEFVKSGM----VVGLGTDSTATHAVDKIGELLHQGKLKNIVG-IPTSKTTHDQAVSL-GIPLSDL 100 (215)
Q Consensus 36 aA~~A~~~V~~g~----vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~-V~tS~~t~~~~~~~-Gi~v~~l 100 (215)
.|.++++.|.+|. ++.-|||-=+...+... ++|++ +.++..++.+++++ +-+++.+
T Consensus 44 ~a~~va~~V~~~~~d~GIliCgtGiG~~iaANK~---------~GIrAa~~~d~~~A~~ar~hNdaNVL~l 105 (140)
T PF02502_consen 44 FAEKVAEAVASGEADRGILICGTGIGMSIAANKV---------PGIRAALCSDPYSAKMAREHNDANVLCL 105 (140)
T ss_dssp HHHHHHHHHHTTSSSEEEEEESSSHHHHHHHHTS---------TT--EEE-SSHHHHHHHHHTT--SEEEE
T ss_pred HHHHHHHHHHcccCCeEEEEcCCChhhhhHhhcC---------CCEEEEeeCCHHHHHHHHHhcCCcEEEe
Confidence 3444445554443 67889998887766543 35554 77888999999998 5777765
No 233
>PRK04457 spermidine synthase; Provisional
Probab=20.52 E-value=94 Score=27.33 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=28.2
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHC
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL 93 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~ 93 (215)
.||.|+|+...++.+... .. .+++|=-+......|++.
T Consensus 72 ~IG~G~G~l~~~l~~~~p------~~-~v~~VEidp~vi~~A~~~ 109 (262)
T PRK04457 72 QIGLGGGSLAKFIYTYLP------DT-RQTAVEINPQVIAVARNH 109 (262)
T ss_pred EECCCHhHHHHHHHHhCC------CC-eEEEEECCHHHHHHHHHH
Confidence 488888888877766432 12 588999999998888765
No 234
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=20.46 E-value=61 Score=31.95 Aligned_cols=58 Identities=16% Similarity=0.093 Sum_probs=34.6
Q ss_pred EEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHH-----HHHHHHHCCCCee--e--cCCCCceeEEEecC
Q 036939 49 VVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKT-----THDQAVSLGIPLS--D--LDSHPVIDLAIDGA 113 (215)
Q Consensus 49 vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~-----t~~~~~~~Gi~v~--~--l~~~~~iDl~iDGa 113 (215)
.+||+.|--+.-|.-+|.+| +|+.+++... -.+.+.+-|+|.. . ..+++.+|-+||=+
T Consensus 119 R~~LDvGcG~aSF~a~l~~r-------~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmv 185 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLER-------NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMV 185 (506)
T ss_pred EEEEeccceeehhHHHHhhC-------CceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhh
Confidence 35555554444455555432 6777665543 2356667798844 2 35778888888866
No 235
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.40 E-value=2.8e+02 Score=18.57 Aligned_cols=59 Identities=12% Similarity=0.021 Sum_probs=34.2
Q ss_pred cccHHHHHHHHhcchhcCCCceeeccee-EecCCCEEEeecCCC-CCCCHHHHHHHHccccCeEEee
Q 036939 128 PVCWKFTANRFPDLFKDCGCVAKLRTCY-EKHNGNCIIDLYFKK-DIGDMEVASNRILRLIAGVVEH 192 (215)
Q Consensus 128 P~a~~~v~~~l~~l~~~~G~~~~lR~p~-vTDnGN~IlD~~f~~-~i~dp~~l~~~L~~i~pGVVe~ 192 (215)
|-.+..+.+.|.+. |.+.. ..-. -.++|...+++.+.- .....+.+-++|+++ |||.-.
T Consensus 10 ~g~L~~i~~~i~~~----~~nI~-~v~~~~~~~~~~~~~~~vev~~~~~l~~i~~~L~~i-~gV~~~ 70 (74)
T cd04887 10 PGMLGRVTTAIGEA----GGDIG-AIDLVEQGRDYTVRDITVDAPSEEHAETIVAAVRAL-PEVKVL 70 (74)
T ss_pred CchHHHHHHHHHHc----CCcEE-EEEEEEecCCEEEEEEEEEcCCHHHHHHHHHHHhcC-CCeEEE
Confidence 55667777777664 65432 1111 234566677765541 133455666789999 998753
No 236
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=20.32 E-value=3.9e+02 Score=24.14 Aligned_cols=68 Identities=7% Similarity=0.010 Sum_probs=42.9
Q ss_pred HHHHHHHHCCCCeeecCCCCceeEEEecCCcccCCCCeeEEEc---c--ccHHHHHHHHhcchhcCCCceeecc------
Q 036939 85 TTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLAVPVEVV---P--VCWKFTANRFPDLFKDCGCVAKLRT------ 153 (215)
Q Consensus 85 ~t~~~~~~~Gi~v~~l~~~~~iDl~iDGaDeVd~K~plPVEV~---P--~a~~~v~~~l~~l~~~~G~~~~lR~------ 153 (215)
.....+.++|++++++++. .| .....|-+=+|+. | .....+.+.|+++..++|.+.++|.
T Consensus 25 ~Vs~~Lae~g~NI~disq~--~d-------~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~~~l~l~~~i~~~~~~~k 95 (289)
T PRK13010 25 AVSGFLAEKGCYIVELTQF--DD-------DESGRFFMRVSFHAQSAEAASVDTFRQEFQPVAEKFDMQWAIHPDGQRPK 95 (289)
T ss_pred HHHHHHHHCCCCEEecccc--cc-------cccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHHHHhCCeEEEecCCCCeE
Confidence 4567889999999999886 12 2222333333433 2 2356666777777666788877774
Q ss_pred --eeEecCCC
Q 036939 154 --CYEKHNGN 161 (215)
Q Consensus 154 --p~vTDnGN 161 (215)
-++|-+|.
T Consensus 96 iavl~Sg~g~ 105 (289)
T PRK13010 96 VVIMVSKFDH 105 (289)
T ss_pred EEEEEeCCCc
Confidence 36666663
No 237
>KOG0846 consensus Mitochondrial/chloroplast ribosomal protein L15/L10 [Translation, ribosomal structure and biogenesis]
Probab=20.31 E-value=3.9e+02 Score=24.36 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=26.1
Q ss_pred ceeEEEecCCcccCCCCeeEEEccccHHHHHHHHhcc
Q 036939 105 VIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPDL 141 (215)
Q Consensus 105 ~iDl~iDGaDeVd~K~plPVEV~P~a~~~v~~~l~~l 141 (215)
.+++..||+|++ +.+|-+||.-++.. .++.+++-
T Consensus 135 Gv~L~~~G~d~~--~~~i~iEvs~aS~~-AiaaIEka 168 (274)
T KOG0846|consen 135 GVQLTADGADEF--KAKINIEVSRASVQ-AIAAIEKA 168 (274)
T ss_pred CceeeccCCccc--cceEEEEehhhhHH-HHHHHHhc
Confidence 699999999987 56788998765544 45668874
No 238
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=20.26 E-value=2.5e+02 Score=25.68 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=27.2
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhc-------------------CCCCCEEEecCcHHHHHHH
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQ-------------------GKLKNIVGIPTSKTTHDQA 90 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~-------------------~~l~~i~~V~tS~~t~~~~ 90 (215)
+...+||+|+||..-. ++.++-.... ..+ .+.+|||...|-.++
T Consensus 77 ~~D~IIavGGGs~~D~-aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~i~VPTtagtgse~ 139 (367)
T cd08182 77 GPDAVLAVGGGSVLDT-AKALAALLGAPREALEDLRIRNKERENRERAL-PLIAIPTTAGTGSEV 139 (367)
T ss_pred CcCEEEEeCCcHHHHH-HHHHHHHHhCCCcHHHHHHHhccCCCCCCCCC-CEEEeCCCCCchhhh
Confidence 4467999999997543 3444432111 124 488899987665544
No 239
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=20.24 E-value=51 Score=31.48 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=16.5
Q ss_pred hcCcCCCEEEeCcChhHHHHH
Q 036939 42 EFVKSGMVVGLGTDSTATHAV 62 (215)
Q Consensus 42 ~~V~~g~vIGLGsGSTv~~~i 62 (215)
.--+.+.++|+++|||....+
T Consensus 130 ~~~~~~~~LGID~GSTtTK~V 150 (396)
T COG1924 130 REYQGMYTLGIDSGSTTTKAV 150 (396)
T ss_pred hhhcCcEEEEEecCCcceeEE
Confidence 355678899999999987543
No 240
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=20.22 E-value=1.9e+02 Score=26.30 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=26.8
Q ss_pred cCCCEEEeCcChhHHHHHHHHHhHHhcC---------------C-CCCEEEecCcHHH
Q 036939 45 KSGMVVGLGTDSTATHAVDKIGELLHQG---------------K-LKNIVGIPTSKTT 86 (215)
Q Consensus 45 ~~g~vIGLGsGSTv~~~i~~L~~~~~~~---------------~-l~~i~~V~tS~~t 86 (215)
+...+||+|+||+.- .++.++-...+. . + .+..|||+.-|
T Consensus 78 ~~D~IIaiGGGS~~D-~aK~va~~~~~~~~~~~~~~~~~~~~~~~~-p~i~IPTt~gt 133 (366)
T PF00465_consen 78 GADCIIAIGGGSVMD-AAKAVALLLANPGDLRDLLGKGPPPTKPAL-PLIAIPTTAGT 133 (366)
T ss_dssp TSSEEEEEESHHHHH-HHHHHHHHHTSSSCGGGGGCECSCCSS--S-EEEEEESSSSS
T ss_pred CCCEEEEcCCCCcCc-HHHHHHhhccCCCcHHHHHhhccccccCCC-cEEEeeCCccc
Confidence 556899999999764 446665444321 1 3 47889998776
No 241
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=20.08 E-value=1.6e+02 Score=25.82 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCcCCCEEEeCcChh-HHHHHHHHHhHHhcCCCCCEEEecC
Q 036939 30 DELKKIAANKSVEFVKSGMVVGLGTDST-ATHAVDKIGELLHQGKLKNIVGIPT 82 (215)
Q Consensus 30 ~~~K~~aA~~A~~~V~~g~vIGLGsGST-v~~~i~~L~~~~~~~~l~~i~~V~t 82 (215)
.++|+.+.+.+++.+....-|-.|.|++ +...++ +++..++-+...+-+.|+
T Consensus 53 ~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~-~a~~a~~~Gad~v~v~~P 105 (289)
T PF00701_consen 53 DEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIE-LARHAQDAGADAVLVIPP 105 (289)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHH-HHHHHHHTT-SEEEEEES
T ss_pred HHHHHHHHHHHHHHccCceEEEecCcchhHHHHHH-HHHHHhhcCceEEEEecc
Confidence 4667778888888887665444455542 222333 333333333444555555
Done!