RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 036939
(215 letters)
>gnl|CDD|215215 PLN02384, PLN02384, ribose-5-phosphate isomerase.
Length = 264
Score = 320 bits (822), Expect = e-112
Identities = 158/266 (59%), Positives = 181/266 (68%), Gaps = 53/266 (19%)
Query: 1 MAVGFPQF----KPSSMENILSSLSPTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDS 56
MA+ +P F K S + S S + LTQDELKKIAA K+VEFV+SGMV+GLGT S
Sbjct: 1 MAIAYPPFIGSEKDSMEVGSMLSPSSPVI-LTQDELKKIAAYKAVEFVESGMVLGLGTGS 59
Query: 57 TATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEV 116
TA HAVD+IGELL QGKLKNI+GIPTSK TH+QAVSLGIPLSDLDSHPV+DLAIDGADEV
Sbjct: 60 TAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPVVDLAIDGADEV 119
Query: 117 DP-----------------------------------------GLAVPVEVVPVCWKFTA 135
DP GLA+PVEVVP CWKFTA
Sbjct: 120 DPNLNLVKGRGGSLLREKMIEGACKKFVVIVDESKLVKHIGGSGLAMPVEVVPFCWKFTA 179
Query: 136 NRFPDLFKDCGCVAKLRT------CYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGV 189
+ LF+ GCVAKLRT + NGN I+DLYFK+DIGD++VAS+ ILRL AGV
Sbjct: 180 EKLQSLFEYAGCVAKLRTKNNGEEPFVTDNGNYIVDLYFKRDIGDLKVASDAILRL-AGV 238
Query: 190 VEHGMFLDMATTVIIVGKLGVTIKNK 215
VEHGMFLDMATTVI+ G+LGVTIK+K
Sbjct: 239 VEHGMFLDMATTVIVAGELGVTIKDK 264
>gnl|CDD|232786 TIGR00021, rpiA, ribose 5-phosphate isomerase. This model
describes ribose 5-phosphate isomerase, an enzyme of the
non-oxidative branch of the pentose phosphate pathway
[Energy metabolism, Pentose phosphate pathway].
Length = 218
Score = 184 bits (470), Expect = 4e-59
Identities = 90/223 (40%), Positives = 112/223 (50%), Gaps = 50/223 (22%)
Query: 32 LKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAV 91
LK+ AA + E+V+ GMVVGLGT ST + ++ +GE + Q L +IVG+PTSK T + A
Sbjct: 1 LKRAAAEAAAEYVEDGMVVGLGTGSTVAYFIEALGERVKQEGL-DIVGVPTSKQTAELAR 59
Query: 92 SLGIPLSDLDSHPVIDLAIDGADEVDPGL------------------------------- 120
LGIPLS LD P +DLAIDGADEVDP L
Sbjct: 60 ELGIPLSSLDEVPELDLAIDGADEVDPNLQLIKGGGGALLREKIVASASKRFIVIADESK 119
Query: 121 --------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKH-----NGNCIIDLY 167
+PVEVVP WK A + L G LR + NGN I+D +
Sbjct: 120 LVDKLGKFPLPVEVVPFAWKAVARKLEKL----GGEPTLRQGNKGGPVVTDNGNYILDCH 175
Query: 168 FKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGV 210
F K I D E + I GVVE G+F+DMA TVI+ K GV
Sbjct: 176 FGKIIPDPEALEEELKS-IPGVVETGLFIDMADTVIVGTKDGV 217
>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A)
subfamily; RPI catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. This reaction leads to the conversion
of phosphosugars into glycolysis intermediates, which
are precursors for the synthesis of amino acids,
vitamins, nucleotides, and cell wall components. In
plants, RPI is part of the Calvin cycle as ribulose
5-phosphate is the carbon dioxide receptor in the first
dark reaction of photosynthesis. There are two unrelated
types of RPIs (A and B), which catalyze the same
reaction, at least one type of RPI is present in an
organism. RPI_A is more widely distributed than RPI_B in
bacteria, eukaryotes, and archaea.
Length = 213
Score = 181 bits (462), Expect = 6e-58
Identities = 85/218 (38%), Positives = 111/218 (50%), Gaps = 52/218 (23%)
Query: 32 LKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAV 91
LK+ AA +V++V+ GMV+GLGT ST + ++ +GE + + NIVG+PTS T + A
Sbjct: 1 LKRAAARAAVDYVEDGMVIGLGTGSTVAYFIEALGERVREE-GLNIVGVPTSFQTEELAR 59
Query: 92 SLGIPLSDLDSHPVIDLAIDGADEVDPGL------------------------------- 120
LGIPL+DLD P +DLAIDGADEVDP L
Sbjct: 60 ELGIPLTDLDEVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESK 119
Query: 121 --------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKH------NGNCIIDL 166
+PVEVVP W + A L G LR K NGN I+D+
Sbjct: 120 LVERLGEFPLPVEVVPFAWSYVARELEKL----GGKPVLREGSGKGGPVVTDNGNYILDV 175
Query: 167 YFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVII 204
+F I D E A + L+ I GVVEHG+FL+MA VI+
Sbjct: 176 HF-GTIEDPE-ALEKELKSIPGVVEHGLFLNMADEVIV 211
>gnl|CDD|234816 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional.
Length = 220
Score = 176 bits (449), Expect = 7e-56
Identities = 79/226 (34%), Positives = 108/226 (47%), Gaps = 49/226 (21%)
Query: 28 TQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH 87
TQDELKK AA + E+V+ GM+VGLGT STA + +D +GE + +G I G+PTS+ +
Sbjct: 2 TQDELKKAAAEAAAEYVEDGMIVGLGTGSTAAYFIDALGERVKEGL--IIGGVPTSEAST 59
Query: 88 DQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL--------------------------- 120
+ A LGIPL DL+ +DL +DGADE+DP L
Sbjct: 60 ELAKELGIPLFDLNEVDSLDLYVDGADEIDPHLNLIKGGGAALTREKIVAAAAKRFICIV 119
Query: 121 ------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTC--YEKHNGNCIIDL 166
+PVEV+P A L G +LR NGN I+D+
Sbjct: 120 DESKLVDVLGKFPLPVEVIPFARSAVARELEKL----GGQPELRMDEPVVTDNGNYILDV 175
Query: 167 YFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTI 212
+F + I D E + I GVVEHG+F + A V++ GV
Sbjct: 176 HFGR-IPDPEALEKELNN-IPGVVEHGLFANRADVVLVGTPDGVKT 219
>gnl|CDD|223198 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport
and metabolism].
Length = 227
Score = 163 bits (414), Expect = 2e-50
Identities = 85/236 (36%), Positives = 113/236 (47%), Gaps = 58/236 (24%)
Query: 28 TQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH 87
QDELKK AA ++E+VK GMV+GLGT STA + ++ +G +G+L +I G+PTS T
Sbjct: 2 DQDELKKAAAKAALEYVKDGMVIGLGTGSTAAYFIEALGRR-VKGEL-DIGGVPTSFQTE 59
Query: 88 DQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL--------------------------- 120
+ A LGIP+S L+ +DLAIDGADEVDP L
Sbjct: 60 ELARELGIPVSSLNEVDSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIV 119
Query: 121 ------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKH------NGNC 162
+PVEV+P + L G LR K NGN
Sbjct: 120 DESKLVEVLGKFPLPVEVIPFARSAVLRKLEKL----GGKPTLREGEGKDGPVITDNGNY 175
Query: 163 IIDLYFK--KDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVG-KLGVTIKNK 215
I+D++F +D ++E + L I GVVE+G+F A VII G GV I K
Sbjct: 176 ILDVHFGRIEDPEELE----KELNAIPGVVENGLFAGRAADVIIAGTDGGVKILEK 227
>gnl|CDD|218860 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A
(phosphoriboisomerase A). This family consists of
several ribose 5-phosphate isomerase A or
phosphoriboisomerase A (EC:5.3.1.6) from bacteria,
eukaryotes and archaea.
Length = 172
Score = 131 bits (331), Expect = 1e-38
Identities = 69/177 (38%), Positives = 83/177 (46%), Gaps = 49/177 (27%)
Query: 77 IVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL---------------- 120
IVG+PTS T + A LGIPLSDLD +DLAIDGADEVDP L
Sbjct: 1 IVGVPTSFQTEELAKELGIPLSDLDEVDELDLAIDGADEVDPNLNLIKGGGGALLREKIV 60
Query: 121 -----------------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEK 157
+PVEVVP W + R +L G KLR
Sbjct: 61 ASAAKKFIVIVDESKLVDVLGKFPLPVEVVPFAWSYVLRRLEEL----GGEPKLRMGEGG 116
Query: 158 ----HNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGV 210
NGN I+D++F + I D E + L+ I GVVEHG+FL MA VI+ K GV
Sbjct: 117 PVVTDNGNYILDVHFGR-IEDPE-ELEKELKNIPGVVEHGLFLGMADKVIVGTKDGV 171
>gnl|CDD|184433 PRK13978, PRK13978, ribose-5-phosphate isomerase A; Provisional.
Length = 228
Score = 83.7 bits (207), Expect = 7e-20
Identities = 62/227 (27%), Positives = 90/227 (39%), Gaps = 46/227 (20%)
Query: 31 ELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQA 90
LK + N + + M +G+GT ST + ++ +L+ + NI G+ TS A
Sbjct: 6 ALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERGY-NITGVCTSNKIAFLA 64
Query: 91 VSLGIPLSDLDSHPVIDLAIDGADEVDPGL------------------------------ 120
LGI + +++ IDLAIDGADEVDP L
Sbjct: 65 KELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDET 124
Query: 121 ----------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLR--TCYEKHNGNCIIDLYF 168
+PVEV W + + D ++ + NGN I+D
Sbjct: 125 KIVQYLGETFKLPVEVDKFNWYHILRKIES-YADIKVERRVNEDVAFITDNGNYILDCKL 183
Query: 169 KKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIKNK 215
K I + + L + GV E G FLDMA VI+ + GV I K
Sbjct: 184 PKGIDPYKF--HEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK 228
>gnl|CDD|238258 cd00458, SugarP_isomerase, SugarP_isomerase: Sugar Phosphate
Isomerase family; includes type A ribose 5-phosphate
isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P)
deaminase, and 6-phosphogluconolactonase (6PGL). RPI
catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. GlcN6P deaminase catalyzes the
reversible conversion of GlcN6P to
D-fructose-6-phosphate (Fru6P) and ammonium, the last
step of the metabolic pathway of
N-acetyl-D-glucosamine-6-phosphate. 6PGL converts
6-phosphoglucono-1,5-lactone to 6-phosphogluconate, the
second step of the oxidative phase of the pentose
phosphate pathway.
Length = 169
Score = 34.3 bits (78), Expect = 0.022
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 45 KSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTS 83
K MV+GLGT ST + +GE L +G++ +IVG PT
Sbjct: 19 KDDMVIGLGTGSTPAYFYKLLGEKLKRGEISDIVGFPTD 57
>gnl|CDD|232977 TIGR00440, glnS, glutaminyl-tRNA synthetase. This protein is a
relatively rare aminoacyl-tRNA synthetase, found in the
cytosolic compartment of eukaryotes, in E. coli and a
number of other Gram-negative Bacteria, and in
Deinococcus radiodurans. In contrast, the pathway to
Gln-tRNA in mitochondria, Archaea, Gram-positive
Bacteria, and a number of other lineages is by
misacylation with Glu followed by transamidation to
correct the aminoacylation to Gln. This enzyme is a
class I tRNA synthetase (hit by the pfam model
tRNA-synt_1c) and is quite closely related to
glutamyl-tRNA synthetases [Protein synthesis, tRNA
aminoacylation].
Length = 522
Score = 32.2 bits (73), Expect = 0.21
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 10 PSSMENILSSLSPTSV----GLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAV 62
P + ++ LS ++P S+ G + L ANK +F + G +ST V
Sbjct: 455 PGAPDDFLSVINPESLVIKQGFMEHSLGDAVANKRFQFEREGYFCLDSKESTTEKVV 511
>gnl|CDD|183982 PRK13337, PRK13337, putative lipid kinase; Reviewed.
Length = 304
Score = 30.0 bits (68), Expect = 0.89
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 34 KIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSL 93
+AA ++VE K +V+ G D T V+ I E ++ KL GI TT+D A +L
Sbjct: 47 TLAAERAVE-RKFDLVIAAGGDGTLNEVVNGIAEKENRPKL----GIIPVGTTNDFARAL 101
Query: 94 GIPLSDLDSHPVIDLAIDGA-DEVDPGLAVPVEV 126
+P I+ A D + G VPV++
Sbjct: 102 HVPRD-----------IEKAADVIIEGHTVPVDI 124
>gnl|CDD|223088 COG0009, SUA5, Putative translation factor (SUA5) [Translation,
ribosomal structure and biogenesis].
Length = 211
Score = 29.1 bits (66), Expect = 1.4
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 27 LTQDELKKIAANKSVEFVKSGMVV--------GLGTDSTATHAVDKI 65
+ + + A K+VE ++ G VV GLG D+T AV+++
Sbjct: 6 IHPENPQPRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERL 52
>gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9. This family
includes the proteinase B inhibitor from Saccharomyces
cerevisiae and the activation peptides from peptidases
of the subtilisin family. The subtilisin propeptides
are known to function as molecular chaperones,
assisting in the folding of the mature peptidase, but
have also been shown to act as 'temporary inhibitors'.
Length = 76
Score = 26.1 bits (58), Expect = 4.3
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 24 SVGLTQDELKKIAANKSVEFV 44
+ LT++E +K+ + VE+V
Sbjct: 47 AAKLTEEEAEKLRKHPDVEYV 67
>gnl|CDD|115320 pfam06652, Methuselah_N, Methuselah N-terminus. This family
represents the N-terminal region of the Drosophila
specific Methuselah protein. Drosophila Methuselah (Mth)
mutants have a 35% increase in average lifespan and
increased resistance to several forms of stress,
including heat, starvation, and oxidative damage. The
protein affected by this mutation is related to G
protein-coupled receptors of the secretin receptor
family. Mth, like secretin receptor family members, has
a large N-terminal ectodomain, which may constitute the
ligand binding site. This family is found in conjunction
with pfam00002.
Length = 179
Score = 27.0 bits (60), Expect = 6.4
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 8/30 (26%)
Query: 146 GCVAKLRTCY-----EKH---NGNCIIDLY 167
GCV KL+ C K+ NG C +
Sbjct: 54 GCVCKLKPCIRFCCPRKNIMDNGKCSDGVS 83
>gnl|CDD|223886 COG0816, COG0816, Predicted endonuclease involved in
recombination (possible Holliday junction resolvase in
Mycoplasmas and B. subtilis) [DNA replication,
recombination, and repair].
Length = 141
Score = 26.8 bits (60), Expect = 6.5
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 14 ENILSSLSPTSVGLTQDELKKIAANKSVEFVKS----GMVVGL-----GTDSTATHAVDK 64
+ + S SP + + K N ++ VK +VVGL GT+ K
Sbjct: 20 DILGSLASPLET-IKRKNGKPQDFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARK 78
Query: 65 IGELLHQ 71
E L +
Sbjct: 79 FAERLKK 85
>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein]
ligase; Validated.
Length = 525
Score = 27.0 bits (60), Expect = 9.3
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 31 ELKKIAANKSVEFVKSGMVVGLGTDSTAT 59
E++++AA V V+ G VV +GT +
Sbjct: 432 EIERVAA--QVRGVREGAVVAVGTGEGSA 458
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,860,044
Number of extensions: 1019105
Number of successful extensions: 1037
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1018
Number of HSP's successfully gapped: 36
Length of query: 215
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 122
Effective length of database: 6,812,680
Effective search space: 831146960
Effective search space used: 831146960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)