RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 036939
(215 letters)
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein
structure initiative, STRU genomics of pathogenic
protozoa consortium; 2.09A {Plasmodium falciparum}
Length = 244
Score = 210 bits (536), Expect = 6e-69
Identities = 77/235 (32%), Positives = 110/235 (46%), Gaps = 48/235 (20%)
Query: 28 TQDELKKIAANKSV-EFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT 86
D LKKI A K+V E+V+S M +GLGT ST + +++I LL GKLK++V IPTS T
Sbjct: 8 HMDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDT 67
Query: 87 HDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL-------------------------- 120
+A LGIPL+ L+ H ID+ IDG DE+D L
Sbjct: 68 ELKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIII 127
Query: 121 ---------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEK----HNGN 161
AVP+E++ ++ ++ GC K+R + N N
Sbjct: 128 GDESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKRNGEIFITDNKN 187
Query: 162 CIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLG-VTIKNK 215
I+D +F + I D+ RI GVV+HG+F++M +I G V NK
Sbjct: 188 YIVDFFFTEPIQDLLETCTRIKM-TTGVVDHGIFVNMTNVALISKHDGTVLTLNK 241
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A
{Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB:
1lk7_A*
Length = 229
Score = 206 bits (528), Expect = 8e-68
Identities = 74/235 (31%), Positives = 109/235 (46%), Gaps = 52/235 (22%)
Query: 27 LTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT 86
+ +E+KKIAA ++++F++ MV+GLGT ST + + +GE L +G++ +IVG+PTS
Sbjct: 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60
Query: 87 HDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL-------------------------- 120
A+ IP++ LD ID+A+DGADEVDP L
Sbjct: 61 KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120
Query: 121 --------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEK------HNG 160
VP+EV+P WK A+LR K NG
Sbjct: 121 VDERKLVDYLCQKMPVPIEVIPQAWKAIIEELSIF----NAKAELRMGVNKDGPVITDNG 176
Query: 161 NCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIKNK 215
N IID F + I D + I GV+E+G+F D+A VI+ + GV +
Sbjct: 177 NFIIDAKFPR-IDDPLDMEIELNT-IPGVIENGIFADIADIVIVGTREGVKKLER 229
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken
structural genomics/proteomi initiative, RSGI,
structural genomics; HET: A5P; 1.74A {Thermus
thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A*
1uj4_A*
Length = 227
Score = 198 bits (507), Expect = 1e-64
Identities = 80/228 (35%), Positives = 109/228 (47%), Gaps = 50/228 (21%)
Query: 28 TQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH 87
+ KK AA+ ++ +V+ GMVVGLGT STA +AV ++ L +G+LK +VG+PTS+ T
Sbjct: 4 PLESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATE 63
Query: 88 DQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL--------------------------- 120
+ A GIPL DL +DLAIDGADE+ PGL
Sbjct: 64 ELAKREGIPLVDLPPEG-VDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIA 122
Query: 121 ------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKH----NGNCII 164
VPVE+VP ++ T DL G +LR ++ G+ I
Sbjct: 123 DHTKKVPVLGRGPVPVEIVPFGYRATLKAIADL----GGEPELRMDGDEFYFTDGGHLIA 178
Query: 165 DLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTI 212
D F IGD +L I GVVE G+F+ MAT ++ G GV
Sbjct: 179 DCRFGP-IGDPLGLHRALLE-IPGVVETGLFVGMATRALVAGPFGVEE 224
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW,
STRU genomics, seattle structural genomics center for
infectious; HET: 5RP; 2.30A {Bartonella henselae}
Length = 255
Score = 196 bits (500), Expect = 3e-63
Identities = 58/239 (24%), Positives = 98/239 (41%), Gaps = 49/239 (20%)
Query: 17 LSSLSPTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKN 76
L + + + +LKK+AA K++EFV+ M +G+G+ ST + +GE + G
Sbjct: 12 LEAQTQGPGSMNVQQLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVANGL--R 69
Query: 77 IVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL---------------- 120
+ + TS+ + G+P+S L+ P +DL IDGADE+ P +
Sbjct: 70 VTCVATSQYSEQLCHKFGVPISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIV 129
Query: 121 -----------------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEK 157
A+P+EV P T + G ++
Sbjct: 130 ASASRAMFVIADETKMVKTLGAFALPIEVNPFGIHATRIAIEKAADNLGLSGEITLRMNG 189
Query: 158 ------HNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGV 210
G+ I D ++ + I ++ S +L I GVVEHG+FL +A+ I+
Sbjct: 190 DDPFKTDGGHFIFDAFWGR-ILQPKLLSEALLA-IPGVVEHGLFLGLASRAIVAMADSQ 246
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans}
Length = 225
Score = 193 bits (494), Expect = 7e-63
Identities = 72/229 (31%), Positives = 99/229 (43%), Gaps = 50/229 (21%)
Query: 30 DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQ 89
+ELKKIA ++ ++V+ GM+VGLGT STA + V+++G + + L+ ++G+ TS T Q
Sbjct: 2 EELKKIAGVRAAQYVEDGMIVGLGTGSTAYYFVEEVGRRVQEEGLQ-VIGVTTSSRTTAQ 60
Query: 90 AVSLGIPLSDLDSHPVIDLAIDGADEVDPGL----------------------------- 120
A +LGIPL +D +D+ +DGADEVDP
Sbjct: 61 AQALGIPLKSIDEVDSVDVTVDGADEVDPNFNGIKGGGGALLMEKIVGTLTKDYIWVVDE 120
Query: 121 ----------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEK----HNGNCIIDL 166
+PVEVV + F G R N IIDL
Sbjct: 121 SKMVDTLGAFRLPVEVVQYGAERLFREFEKK----GYKPSFREYDGVRFVTDMKNFIIDL 176
Query: 167 YFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIKNK 215
I D N + GVVEHG+F M VI+ GK GV I
Sbjct: 177 DLGS-IPDPIAFGNMLDH-QVGVVEHGLFNGMVNRVIVAGKDGVRILEA 223
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative,
MCSG, midwest center for structural genomics; HET: ABF;
1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB:
1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A*
Length = 219
Score = 189 bits (483), Expect = 3e-61
Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 50/229 (21%)
Query: 27 LTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT 86
+TQDELKK ++++V+ G +VG+GT STA H +D +G + K + + +S +
Sbjct: 1 MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTM----KGQIEGAVSSSDAS 56
Query: 87 HDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL-------------------------- 120
++ SLGI + DL+ + + +DGADE++ +
Sbjct: 57 TEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICI 116
Query: 121 -------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLY 167
+PVEV+P+ A + L G + R NGN I+D++
Sbjct: 117 ADASKQVDILGKFPLPVEVIPMARSAVARQLVKL----GGRPEYRQGVVTDNGNVILDVH 172
Query: 168 FKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKL-GVTIKNK 215
+ I D N I I GVV G+F + V ++G GV K
Sbjct: 173 GME-ILDPIAMENAINA-IPGVVTVGLFANRGADVALIGTPDGVKTIVK 219
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces
cerevisiae}
Length = 264
Score = 189 bits (483), Expect = 1e-60
Identities = 58/253 (22%), Positives = 94/253 (37%), Gaps = 62/253 (24%)
Query: 21 SPTSVGLTQDELKKIAANKSVE---FVKSGMVVGLGTDSTATHAVDKIGELLHQGKLK-- 75
+ S+G ++ K+ AA ++V+ ++G+G+ ST + ++IG+ LH K
Sbjct: 10 ALESLGNPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEV 69
Query: 76 --NIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL------------- 120
+ IPT + + + + L ++ +P ID+A DGADEVD L
Sbjct: 70 ASKFICIPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQE 129
Query: 121 ------------------------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAK 150
VP+E+VP + N +
Sbjct: 130 KLVSTSAKTFIVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVRVKNDLLEQL--HAEKVD 187
Query: 151 LRTCYEKH-------NGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVI 203
+R N N IID F + I D I + GVVE G+F+D A+
Sbjct: 188 IRQGGSAKAGPVVTDNNNFIIDADFGE-ISDPRKLHREIKL-LVGVVETGLFIDNASKAY 245
Query: 204 IVGKLG-VTIKNK 215
G V + K
Sbjct: 246 FGNSDGSVEVTEK 258
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase,
northeast structural genomics consortium, IR21,
structural genomics, PSI; HET: CIT; 1.90A {Haemophilus
influenzae} SCOP: c.124.1.4 d.58.40.1
Length = 219
Score = 185 bits (473), Expect = 1e-59
Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 51/229 (22%)
Query: 27 LTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT 86
+ Q E+KK+AA ++++VK+ +VG+G+ ST ++ +G + K K + SK +
Sbjct: 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI----KDKIQGAVAASKES 56
Query: 87 HDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL-------------------------- 120
+ GI + + + +D+ +DGADE++P
Sbjct: 57 EELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICI 116
Query: 121 --------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDL 166
+PVEV+P+ + L G + R NGN I+D+
Sbjct: 117 VDSSKQVDVLGSTFPLPVEVIPMARSQVGRKLAAL----GGSPEYREGVVTDNGNVILDV 172
Query: 167 YFKKDIGDMEVASNRILRLIAGVVEHGMF-LDMATTVIIVGKLGVTIKN 214
+ I + + +AGVV +G+F L A VI+ G + +
Sbjct: 173 HNFS-ILNPVEIEKELNN-VAGVVTNGIFALRGADVVIVGTPEGAKVID 219
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics,
pentose phosphate pathway, carbon fixation, NPPSFA;
1.78A {Methanocaldococcus jannaschii} PDB: 3ixq_A*
Length = 226
Score = 185 bits (473), Expect = 1e-59
Identities = 66/237 (27%), Positives = 103/237 (43%), Gaps = 59/237 (24%)
Query: 27 LTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT 86
++ ++LK A ++V+ VK GMV+GLGT STA + ++G + + +L + GIPTS
Sbjct: 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEEL-TVFGIPTSFEA 59
Query: 87 HDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPG--------------------------- 119
A+ IPL LD + +D+A DGADEV+
Sbjct: 60 KMLAMQYEIPLVTLDEYD-VDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVV 118
Query: 120 --------------LAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKH------N 159
+PVEV+P ++ ++ G A +R K N
Sbjct: 119 LVDESKLVKKLGEKFPIPVEVIPSAYRVVIRALSEM----GGEAVIRLGDRKRGPVITDN 174
Query: 160 GNCIIDLYFK-KDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIKNK 215
GN IID++ D ++E + I GVVE+G+F + V++ K GV K
Sbjct: 175 GNMIIDVFMNIDDAIELEKE----INNIPGVVENGIFTKVD-KVLVGTKKGVKTLKK 226
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119,
center for structu genomics of infectious diseases,
csgid; 2.32A {Francisella tularensis subsp}
Length = 224
Score = 183 bits (467), Expect = 9e-59
Identities = 56/225 (24%), Positives = 94/225 (41%), Gaps = 50/225 (22%)
Query: 28 TQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTH 87
QDELKK+AA ++ + + + + +G+GT ST ++++ + K + +S+ +
Sbjct: 8 NQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNY----RDKIKTVVSSSEDST 63
Query: 88 DQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL--------------------------- 120
+ +LG + DL+ IDL IDGADE +
Sbjct: 64 RKLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICII 123
Query: 121 ------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYF 168
+P+EV+P+ + A + L G R NGN I+D+Y
Sbjct: 124 DESKKVNTLGNFPLPIEVIPMARSYIARQIVKL----GGQPVYREQTITDNGNVILDVYN 179
Query: 169 KKDIGDMEVASNRILRLIAGVVEHGMF-LDMATTVIIVGKLGVTI 212
K I + + + I GVV +G+F L A TVI+ K +
Sbjct: 180 LK-IDNPLKLETELNQ-ITGVVTNGIFALKPADTVIMATKDSNIV 222
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics
center for infectious DI isomerase, ribose isomerase;
HET: R5P; 1.71A {Burkholderia thailandensis} PDB:
3u7j_A*
Length = 239
Score = 179 bits (456), Expect = 7e-57
Identities = 56/229 (24%), Positives = 87/229 (37%), Gaps = 58/229 (25%)
Query: 27 LTQDELKKIAANKSVEFVK----SGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPT 82
+TQDELK++ + +V G V+G+GT STA +D + + K + + +
Sbjct: 9 MTQDELKRLVGEAAARYVTDNVPQGAVIGVGTGSTANCFIDALAAV----KDRYRGAVSS 64
Query: 83 SKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL---------------------- 120
S T ++ S GI + DL+ + + +DGADE+D
Sbjct: 65 SVATTERLKSHGIRVFDLNEIESLQVYVDGADEIDESGAMIKGGGGALTREKIVASVAET 124
Query: 121 -----------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKH----- 158
+PVEVVP+ R L G V LR +
Sbjct: 125 FVCIADASKRVAMLGQFPLPVEVVPMARTAIGRRLAAL----GGVPVLRVKQDGTPYVTD 180
Query: 159 NGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGK 207
NGN I+D+ + I D I GVV G+F + ++G
Sbjct: 181 NGNEILDVKGLR-IDDPRALEAAING-WPGVVTVGLFAQRGADLCLLGT 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 8e-06
Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 31/102 (30%)
Query: 1 MAVGFPQFKPSSMENILSSLSPTSVGLTQDELKKI---AANKSVEFV------KSGM--V 49
+A+ P + + +Q+ L+ + ++ V V
Sbjct: 1810 IAIN-----PGRV----------AASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 50 VGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAV 91
G A+D + +L+ KL+ I I K+ + V
Sbjct: 1855 AA-GD----LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 31.2 bits (70), Expect = 0.33
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 21/62 (33%)
Query: 54 TDSTATHAVD-------KIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVI 106
T ATH +D +G L H +N G V + I LD +P
Sbjct: 494 TQFKATHILDFGPGGASGLGVLTH----RNKDG---------TGVRV-IVAGTLDINPDD 539
Query: 107 DL 108
D
Sbjct: 540 DY 541
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 2e-05
Identities = 30/183 (16%), Positives = 51/183 (27%), Gaps = 40/183 (21%)
Query: 19 SLSPTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDS-----TATH--AVDKIGELLHQ 71
SL S+ LT DE+K + + T+ + I E +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLK----------YLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 72 GK--LKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAI--DGADEVDPGLAVPVEVV 127
G N + K T SL + L++ A +P ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-------IPTILL 392
Query: 128 PVCWKFTANRFPDLFKDCGCVAKL--RTCYEKHNGNCII---DLYF--KKDIGDMEVASN 180
+ W + V KL + EK I +Y K + +
Sbjct: 393 SLIWFDVIKSDVMVV-----VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 181 RIL 183
I+
Sbjct: 448 SIV 450
Score = 34.8 bits (79), Expect = 0.016
Identities = 21/179 (11%), Positives = 51/179 (28%), Gaps = 36/179 (20%)
Query: 23 TSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPT 82
G Q + K I + FV + D +L + ++ +I+
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVD---------NFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 83 SKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPDLF 142
+ + + L L ++ ++ ++ +KF +
Sbjct: 60 AVS---GTLRLFWTLLSKQEE-MVQKFVEEVLRIN-------------YKFLMSPIKTEQ 102
Query: 143 KDCGCVAKLRTCYEK-----HNGNCIIDLYFKKDIGDMEVASNRILRL--IAGVVEHGM 194
+ + + Y + +N N + Y + +L L V+ G+
Sbjct: 103 RQ---PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 32.3 bits (74), Expect = 0.098
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 77 IVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLAVPVEVVP 128
+ G S++ AV G +S D + A + LAVP+ +
Sbjct: 34 VFGYNRSRSGAKSAVDEGFDVSA-DLEATLQRAAAEDALIV--LAVPMTAID 82
>2h7z_B Irditoxin subunit B; three-finger toxin, neurotoxin, snake venom;
1.50A {Boiga irregularis} SCOP: g.7.1.1
Length = 77
Score = 27.8 bits (61), Expect = 0.83
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 128 PVCWKFTANRFPDLFKDCGCVAKLRTCYE--KHNGNCIIDLYFK 169
+C++ + FKD C RTCY + +GN + K
Sbjct: 8 TLCFECNRETCSNCFKDNRCPPYHRTCYTLYRPDGNGEMKWAVK 51
>2h5f_A Denmotoxin; three-finger toxin, neurotoxin, snake venom; 1.90A
{Boiga dendrophila} SCOP: g.7.1.1
Length = 77
Score = 27.4 bits (60), Expect = 1.1
Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 2/44 (4%)
Query: 128 PVCWKFTANRFPDLFKDCGCVAKLRTCYE--KHNGNCIIDLYFK 169
C + + + C+ TCY K + N + K
Sbjct: 8 GFCIQCNRKTWSNCSIGHRCLPYHMTCYTLYKPDENGEMKWAVK 51
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.2
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 10/34 (29%)
Query: 12 SMENILSSL---SPTSVGLTQDELKKIAANKSVE 42
+++ + +SL + D +A ++E
Sbjct: 21 ALKKLQASLKLYAD-------DSAPALAIKATME 47
Score = 26.8 bits (58), Expect = 3.5
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 9/32 (28%)
Query: 97 LSDLDSHPVIDL-AIDGADEVDPGLAV--PVE 125
L L + + L A D A P LA+ +E
Sbjct: 22 LKKLQAS--LKLYADDSA----PALAIKATME 47
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics,
porphyromona gingivalis, PSI, protein structure
initiative; 1.90A {Porphyromonas gingivalis} SCOP:
a.4.5.4 b.82.3.2
Length = 232
Score = 28.0 bits (63), Expect = 2.3
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 9 KPSSMENILSSLSPTSVGLTQDELKKIAANKSVEFVKSGMVV 50
K +S + + L L ++E + + K V
Sbjct: 3 KTASDKGLGHLLRDVWSLLNEEERELLDKEIQPFPCKKASTV 44
>1m06_G G protein, GPG, major spike protein; bacteriophage, virion; HET:
3DR; 3.50A {Enterobacteria phage ALPHA3} SCOP: b.121.5.1
PDB: 1m0f_G 1rb8_G*
Length = 187
Score = 27.6 bits (60), Expect = 2.8
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 70 HQGKLKNIVGIPTSKTTHDQAVSLGIPLS-DLDSHPVIDLA-IDGADEVDPGLAVPV-EV 126
G + + TS T + +S G+ LS S+P++ + + A E +A E
Sbjct: 60 SDGSFIVAMKVDTSPTDPNCVISAGVNLSFAGTSYPIVGIVRFESASEQPTSIAGSEVEH 119
Query: 127 VPVCWKFTANRFPDLFKDC 145
P+ + +DC
Sbjct: 120 YPIEMSVGSGGVCS-ARDC 137
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural
genomics, protein structure initiative; 1.78A
{Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16
Length = 420
Score = 27.0 bits (60), Expect = 5.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 42 EFVKSGMVVGLGTDSTA 58
F +G+ V LGTDS A
Sbjct: 341 AFAAAGVEVALGTDSVA 357
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 5.8
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 2 AVGFPQFKPSSM-ENILSSLSPTSVGLTQDE 31
+G F M N+L L+P V L Q
Sbjct: 691 KMGVRTFSQKEMAFNLLGLLTPEVVELCQKS 721
>3mdu_A N-formimino-L-glutamate iminohydrolase; amonohydralase family,
N-formimino-L-glutamate iminohydrolas
guanidino-L-glutamate; HET: NGQ; 1.40A {Pseudomonas
aeruginosa} PDB: 3mdw_A*
Length = 453
Score = 26.9 bits (60), Expect = 6.6
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 42 EFVKSGMVVGLGTDSTA 58
+F+ G +G+G+DS
Sbjct: 307 DFLAQGGRLGIGSDSHV 323
>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease; 2.05A {Brucella
melitensis biovar abortus}
Length = 458
Score = 26.5 bits (59), Expect = 7.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 41 VEFVKSGMVVGLGTDSTA 58
EF +G G+G+DS
Sbjct: 315 TEFAAAGGKFGIGSDSNV 332
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA
LIG amidotransferase, ligase; 2.30A {Saccharomyces
cerevisiae}
Length = 187
Score = 26.1 bits (57), Expect = 7.5
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 11 SSMENILSSLSPTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLH 70
SS+E + S VG ++K+I NK V ++ +D L+H
Sbjct: 2 SSVEELTQLFS--QVGFEDKKVKEIVKNKKVSDSLYKLIKETPSDYQWN---KSTRALVH 56
Query: 71 QGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAID 111
+ + + + GI DL + +D A
Sbjct: 57 NLASF----VKGTDLPKSELIVNGIINGDLKTSLQVDAAFK 93
>4dzh_A Amidohydrolase; adenosine deaminase, nysgrc, structural GENO YORK
structural genomics research consortium; 1.55A
{Xanthomonas campestris PV}
Length = 472
Score = 26.4 bits (59), Expect = 7.8
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 42 EFVKSGMVVGLGTDSTA 58
++ + + +GTD A
Sbjct: 303 ALQRASVNLAIGTDGCA 319
>4f0r_A 5-methylthioadenosine/S-adenosylhomocysteine DEAM; structural
genomics, PSI-biology; HET: MSE MTA; 1.80A
{Chromobacterium violaceum} PDB: 4f0s_A*
Length = 447
Score = 26.4 bits (59), Expect = 8.2
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 42 EFVKSGMVVGLGTDSTA 58
+ + +G+ VG+GTD A
Sbjct: 294 KLMDAGVAVGIGTDGAA 310
>3lnp_A Amidohydrolase family protein OLEI01672_1_465; TIM barrel,
beta-fold, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.10A {Oleispira antarctica}
Length = 468
Score = 26.4 bits (59), Expect = 8.9
Identities = 4/17 (23%), Positives = 9/17 (52%)
Query: 42 EFVKSGMVVGLGTDSTA 58
+ + + + +GTD A
Sbjct: 321 KLSAANIPLAIGTDGAA 337
>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase,
PSI, protein structure initiative; 1.50A {Thermotoga
maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A
Length = 406
Score = 26.4 bits (59), Expect = 8.9
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 42 EFVKSGMVVGLGTDSTA 58
++ GM V LGTD A
Sbjct: 266 RMIEHGMKVTLGTDGAA 282
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 26.3 bits (58), Expect = 9.6
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 16 ILSSLS-PTSVGLTQDELKKIA 36
I+ + + PTS + L I
Sbjct: 249 IVVNPTNPTSKEFDTNALNAIK 270
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural
genomics, joint center for structura genomics, JCSG;
2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4
b.82.3.2
Length = 232
Score = 26.1 bits (58), Expect = 9.6
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 12 SMENILSSLSPTSV--GLTQDELKKIAANKSVEFVK 45
ME + +L + GL ++ I + F+K
Sbjct: 12 HMETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIK 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.401
Gapped
Lambda K H
0.267 0.0798 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,343,262
Number of extensions: 206906
Number of successful extensions: 682
Number of sequences better than 10.0: 1
Number of HSP's gapped: 645
Number of HSP's successfully gapped: 64
Length of query: 215
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 125
Effective length of database: 4,188,903
Effective search space: 523612875
Effective search space used: 523612875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)