Query 036940
Match_columns 199
No_of_seqs 108 out of 431
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:57:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 7.3E-44 1.6E-48 286.5 16.8 152 35-194 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 2.2E-38 4.8E-43 252.6 15.1 143 30-182 3-149 (149)
3 PF01284 MARVEL: Membrane-asso 98.6 1.8E-06 3.9E-11 66.6 13.2 139 31-188 3-143 (144)
4 KOG4016 Synaptic vesicle prote 55.8 1.3E+02 0.0029 25.8 14.2 159 18-193 9-169 (233)
5 PF15555 DUF4658: Domain of un 21.9 1.2E+02 0.0026 23.7 3.3 34 21-54 59-92 (129)
6 PF06376 DUF1070: Protein of u 21.9 1.1E+02 0.0024 18.6 2.5 15 123-137 13-27 (34)
7 PF05702 Herpes_UL49_5: Herpes 21.6 1.8E+02 0.004 21.8 4.1 49 147-195 37-85 (98)
8 COG3647 Predicted membrane pro 17.2 5.5E+02 0.012 21.4 6.3 34 141-180 164-197 (205)
9 PF14147 Spore_YhaL: Sporulati 15.8 1.9E+02 0.0041 19.2 2.7 23 84-106 2-24 (52)
10 COG5515 Uncharacterized conser 12.6 1.1E+02 0.0023 21.3 0.9 11 163-173 15-25 (70)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=7.3e-44 Score=286.51 Aligned_cols=152 Identities=36% Similarity=0.633 Sum_probs=139.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhccceeEEEeeecccCCceeeeEEEEeeeechhHHHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 036940 35 VMLRILGFSLTFIAAIVVGVDKETQIISFTLAETMPSVQVSVTAKWQFMSAFVYFLVSNAIASSYAALSLAFTLAITR-F 113 (199)
Q Consensus 35 l~LR~~a~~~s~~a~~vM~t~~qt~~~~~~~~~~~~~~~~~~~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~~~-~ 113 (199)
++||+++++++++|+++|+||+||.++.. ..++.++||+|+++|+|+|++|+|+|+|+++|+++++.+.. +
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~--------~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~ 72 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFV--------QLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKR 72 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeec--------ccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47999999999999999999999998731 12778999999999999999999999999999999886542 2
Q ss_pred C-CchhhHHHhHHHHHHHHHHHHHhHHHHHHHHHhcCCcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036940 114 H-NNAALGLIMLDLITMGLLFSANGAAMAIGMIGLKGNSHVHWNKVCNVFGGFCRNFTAALVLSILGSFAFLFLVAVAIL 192 (199)
Q Consensus 114 ~-~~~~~~~f~~Dqv~ayLl~SaaaAA~ai~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Sv~lsflA~~~~~~~s~lS~~ 192 (199)
+ ....|++|++||+++||++||++||+++++++|+||+|.+|+|+|+.+++||+|+++|++++|+|++++++++++|++
T Consensus 73 ~~~~~~~~~f~~D~v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~~~~FC~~~~~sl~~s~~a~v~~~llsv~Sa~ 152 (154)
T TIGR01569 73 RVFFKLIALFFLDLVMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGVFGKFCDRIAGSLALSLFAVILLVLLSILSAI 152 (154)
T ss_pred cchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 235899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh
Q 036940 193 NL 194 (199)
Q Consensus 193 ~L 194 (199)
++
T Consensus 153 ~~ 154 (154)
T TIGR01569 153 SL 154 (154)
T ss_pred cC
Confidence 75
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=2.2e-38 Score=252.56 Aligned_cols=143 Identities=37% Similarity=0.606 Sum_probs=132.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhhccceeEEEeeecccCCceeeeEEEEeeeechhHHHHHHHHHHHHHHHHHHHHHHH
Q 036940 30 FKSSDVMLRILGFSLTFIAAIVVGVDKETQIISFTLAETMPSVQVSVTAKWQFMSAFVYFLVSNAIASSYAALSLAFTLA 109 (199)
Q Consensus 30 ~~~~~l~LR~~a~~~s~~a~~vM~t~~qt~~~~~~~~~~~~~~~~~~~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~ 109 (199)
.+..+++||+++++++++|+++|++|+||.++ ..++.+++|+|+++|+|++++|+|+|+|+++|++++++
T Consensus 3 ~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~----------~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~ 72 (149)
T PF04535_consen 3 LRIASLVLRLLAFVLSLAALAVMATNKQTVSV----------FSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIY 72 (149)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhcCCccee----------eccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999888 35778999999999999999999999999999999886
Q ss_pred Hhc---CCC-chhhHHHhHHHHHHHHHHHHHhHHHHHHHHHhcCCcccccccccccccchhhhHHHHHHHHHHHHHH
Q 036940 110 ITR---FHN-NAALGLIMLDLITMGLLFSANGAAMAIGMIGLKGNSHVHWNKVCNVFGGFCRNFTAALVLSILGSFA 182 (199)
Q Consensus 110 ~~~---~~~-~~~~~~f~~Dqv~ayLl~SaaaAA~ai~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Sv~lsflA~~~ 182 (199)
... .++ ...|++|++||+++||++|+++||+++++++++||++.+|.++|+.+++||+|+++|++++|+|+++
T Consensus 73 ~~~~~~~~~~~~~~~~f~~Dqv~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~~~~FC~~~~~sv~lsf~a~~~ 149 (149)
T PF04535_consen 73 SLSRGKLRSKLLAWFLFILDQVLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQFGKFCNRAAASVALSFLAFVA 149 (149)
T ss_pred HHHccCCcccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhccchhhHHHHHHHHHHHHHHHHHC
Confidence 532 223 3589999999999999999999999999999999999999999999999999999999999999874
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=98.60 E-value=1.8e-06 Score=66.58 Aligned_cols=139 Identities=19% Similarity=0.075 Sum_probs=99.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhhccceeEEEeeecccCCceeeeEEEEeeeechhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036940 31 KSSDVMLRILGFSLTFIAAIVVGVDKETQIISFTLAETMPSVQVSVTAKWQFMSAFVYFLVSNAIASSYAALSLAFTLAI 110 (199)
Q Consensus 31 ~~~~l~LR~~a~~~s~~a~~vM~t~~qt~~~~~~~~~~~~~~~~~~~~~f~~~~af~ylv~an~i~~~Ysllql~~~~~~ 110 (199)
+....+||+++++++++.+.+++....+... ......++..|.+.+.++...|++..++..+..
T Consensus 3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 66 (144)
T PF01284_consen 3 RSPSGILRILQLVFALIIFGLVASSIATGSQ----------------IYGGSPSACGFALFVAVLSFLYTLIFLLLYLFS 66 (144)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhcccc----------------ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999987542211 234455678899999999999998888887754
Q ss_pred hc--CCCchhhHHHhHHHHHHHHHHHHHhHHHHHHHHHhcCCcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHH
Q 036940 111 TR--FHNNAALGLIMLDLITMGLLFSANGAAMAIGMIGLKGNSHVHWNKVCNVFGGFCRNFTAALVLSILGSFAFLFLVA 188 (199)
Q Consensus 111 ~~--~~~~~~~~~f~~Dqv~ayLl~SaaaAA~ai~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Sv~lsflA~~~~~~~s~ 188 (199)
.+ ++....+.+++.|.+++.+-+.+..+-+.-...-+.+++ +...+...++-|+...++.++++++++++..+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~v~~il~l~a~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~Aa~~f~~~~~~l~~~s~~ 143 (144)
T PF01284_consen 67 LKYRPRIPWPLVEFIFDAVFAILWLAAFIALAAYLSDHSCSNT---GNDYSYSGCSRCGAWKAAAAFGFLNWLLFIVSAV 143 (144)
T ss_pred HhcccccccchhHHHHHHHHHHHHHHHHHHHHHHhcCcccccC---CCCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 21 212345689999999999998876665543211111111 2233445567899999999999999999988764
No 4
>KOG4016 consensus Synaptic vesicle protein Synaptogyrin involved in regulation of Ca2+-dependent exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.78 E-value=1.3e+02 Score=25.78 Aligned_cols=159 Identities=9% Similarity=0.004 Sum_probs=88.3
Q ss_pred cccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccceeEEEeeecccCCceeeeEEEEeeeechhHHHHHHHHHHH
Q 036940 18 NVKVVESSKRVMFKSSDVMLRILGFSLTFIAAIVVGVDKETQIISFTLAETMPSVQVSVTAKWQFMSAFVYFLVSNAIAS 97 (199)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~LR~~a~~~s~~a~~vM~t~~qt~~~~~~~~~~~~~~~~~~~~~f~~~~af~ylv~an~i~~ 97 (199)
-+.|-+-++....+....++|++..+++++-.--+.+.-=++.- + ...+.=+-=.|..+.+|=+++-..+.
T Consensus 9 gkAGaafD~~tF~rkP~ti~R~~~~lFsliVf~si~~eGy~n~~-----~----~~~~~Ciynrn~~ACsyg~avG~~Af 79 (233)
T KOG4016|consen 9 GKAGAAFDPVTFLRKPQTILRVVSWLFSLIVFGSIVNEGYLNSA-----S----SGEEFCIYNRNSNACSYGVAVGVLAF 79 (233)
T ss_pred cccccccChHHHhcCchhHHHHHHHHHHHhheeeeccccccCcc-----c----CCceEEEECCCCcchhHHHHHHHHHH
Confidence 34556667777888899999999999998766555432111100 0 01112222356789999999999998
Q ss_pred HHHHHHHHHHHHHhc-CCCchhhHHHhHHHHHHHHHHHHHhHHHHHHHHHhcCCccccccccc-ccccchhhhHHHHHHH
Q 036940 98 SYAALSLAFTLAITR-FHNNAALGLIMLDLITMGLLFSANGAAMAIGMIGLKGNSHVHWNKVC-NVFGGFCRNFTAALVL 175 (199)
Q Consensus 98 ~Ysllql~~~~~~~~-~~~~~~~~~f~~Dqv~ayLl~SaaaAA~ai~~l~~~G~~~~~W~~vC-~~~~~FC~~~~~Sv~l 175 (199)
.=+++-++++..-.+ .+.+...-..++|.+++.|-.--== .+-.++.. +|..-- ....-=-+.+.++|+.
T Consensus 80 la~~~flvlD~~f~qISsv~~RkraVl~Dl~~Salwtflwf--vGFc~l~n------qwqvs~p~~~~~~a~saraaIaf 151 (233)
T KOG4016|consen 80 LACLAFLVLDVYFPQISSVKDRKRAVLADLGVSALWAFLWF--VGFCFLAN------QWQVSKPKENPLGAGSARAAIAF 151 (233)
T ss_pred HHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHHHHH--HHHHHHHH------HhhccCCCCCCcCcchHHHHHHH
Confidence 888888887763221 1111111223445444333210000 11223322 342110 1111113478899999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 036940 176 SILGSFAFLFLVAVAILN 193 (199)
Q Consensus 176 sflA~~~~~~~s~lS~~~ 193 (199)
+|++.+.-...+++...|
T Consensus 152 sffSilsW~~~A~lA~qR 169 (233)
T KOG4016|consen 152 SFFSILSWGGQAVLAFQR 169 (233)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999988888887776443
No 5
>PF15555 DUF4658: Domain of unknown function (DUF4658)
Probab=21.93 E-value=1.2e+02 Score=23.65 Aligned_cols=34 Identities=15% Similarity=0.047 Sum_probs=26.7
Q ss_pred ccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Q 036940 21 VVESSKRVMFKSSDVMLRILGFSLTFIAAIVVGV 54 (199)
Q Consensus 21 ~~~~~~~~~~~~~~l~LR~~a~~~s~~a~~vM~t 54 (199)
.+..|.+|.....+++||+...++..+++.+-..
T Consensus 59 t~~~p~rP~p~g~sLlL~L~~CiLL~vaLglyCg 92 (129)
T PF15555_consen 59 TIRAPGRPRPHGGSLLLRLCVCILLGVALGLYCG 92 (129)
T ss_pred eeecCCCCCCCCCchhHHHHHHHHHHHHHHHHcc
Confidence 3444555666789999999999999999888663
No 6
>PF06376 DUF1070: Protein of unknown function (DUF1070); InterPro: IPR009424 This entry represents the arabinogalactan peptide family found in plants [].
Probab=21.92 E-value=1.1e+02 Score=18.57 Aligned_cols=15 Identities=13% Similarity=-0.062 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHHHh
Q 036940 123 MLDLITMGLLFSANG 137 (199)
Q Consensus 123 ~~Dqv~ayLl~Saaa 137 (199)
..||.++|+|+-++-
T Consensus 13 aiDqgiay~Lm~~Al 27 (34)
T PF06376_consen 13 AIDQGIAYMLMLVAL 27 (34)
T ss_pred hhhHHHHHHHHHHHH
Confidence 369999999987543
No 7
>PF05702 Herpes_UL49_5: Herpesvirus UL49.5 envelope/tegument protein; InterPro: IPR008647 UL49.5 protein consists of 98 amino acids with a calculated molecular mass of 10,155 Da. It contains putative signal peptide and transmembrane domains but lacks a consensus sequence for N glycosylation. UL49.5 protein is an O-glycosylated structural component of the viral envelope [].
Probab=21.59 E-value=1.8e+02 Score=21.81 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=35.0
Q ss_pred hcCCcccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 036940 147 LKGNSHVHWNKVCNVFGGFCRNFTAALVLSILGSFAFLFLVAVAILNLH 195 (199)
Q Consensus 147 ~~G~~~~~W~~vC~~~~~FC~~~~~Sv~lsflA~~~~~~~s~lS~~~L~ 195 (199)
+.++.+.-|.+-|+.-|-.-+.-.++.++=+++.+...+..+.-+||.+
T Consensus 37 ~~e~~~~FW~a~CSArGv~i~~~s~asV~FY~sL~aV~vall~~aY~aC 85 (98)
T PF05702_consen 37 REESRRDFWSAACSARGVPIDFPSAASVLFYVSLLAVCVALLAYAYRAC 85 (98)
T ss_pred HhHHHhcccccccccCceecCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445799999988877777788877777777666666666666654
No 8
>COG3647 Predicted membrane protein [Function unknown]
Probab=17.21 E-value=5.5e+02 Score=21.36 Aligned_cols=34 Identities=24% Similarity=0.511 Sum_probs=23.5
Q ss_pred HHHHHHhcCCcccccccccccccchhhhHHHHHHHHHHHH
Q 036940 141 AIGMIGLKGNSHVHWNKVCNVFGGFCRNFTAALVLSILGS 180 (199)
Q Consensus 141 ai~~l~~~G~~~~~W~~vC~~~~~FC~~~~~Sv~lsflA~ 180 (199)
+++.++..| ++|+. +-|-+|+-.++=.++.+++.
T Consensus 164 giaFLGsQG---DqWDa---QkDmlcdtlGAltal~lla~ 197 (205)
T COG3647 164 GIAFLGSQG---DQWDA---QKDMLCDTLGALTALILLAR 197 (205)
T ss_pred hHHHhhccc---chhhh---HHhHHHHHHHHHHHHHHHHH
Confidence 355666555 66875 44778998888777777664
No 9
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=15.82 E-value=1.9e+02 Score=19.25 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 036940 84 SAFVYFLVSNAIASSYAALSLAF 106 (199)
Q Consensus 84 ~af~ylv~an~i~~~Ysllql~~ 106 (199)
|=++|++++.++.++|-++-...
T Consensus 2 PwWvY~vi~gI~~S~ym~v~t~~ 24 (52)
T PF14147_consen 2 PWWVYFVIAGIIFSGYMAVKTAK 24 (52)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999998776553
No 10
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=12.57 E-value=1.1e+02 Score=21.31 Aligned_cols=11 Identities=55% Similarity=0.957 Sum_probs=9.1
Q ss_pred cchhhhHHHHH
Q 036940 163 GGFCRNFTAAL 173 (199)
Q Consensus 163 ~~FC~~~~~Sv 173 (199)
..||+|+.+++
T Consensus 15 ssFChrvta~L 25 (70)
T COG5515 15 SSFCHRVTAAL 25 (70)
T ss_pred HHHHHHHHHHH
Confidence 37999999875
Done!