Query 036940
Match_columns 199
No_of_seqs 108 out of 431
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 11:23:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_X Photosystem I subunit P 8.1 2.2E+02 0.0076 16.4 1.9 15 87-101 17-31 (35)
2 1v54_J Cytochrome C oxidase po 7.4 2.6E+02 0.009 17.9 2.3 28 81-108 27-54 (59)
3 2y69_J Cytochrome C oxidase po 6.2 4.3E+02 0.015 18.0 3.0 29 80-108 47-75 (80)
4 2jwa_A Receptor tyrosine-prote 6.2 5.2E+02 0.018 15.6 3.6 17 172-188 13-29 (44)
5 2lg4_A Aurelin; antimicrobial 7.3 1.4E+02 0.0049 17.8 0.0 14 156-169 9-22 (40)
6 3qoe_A Heterocyst differentiat 4.7 1.9E+02 0.0064 24.1 0.4 13 123-135 18-30 (302)
7 3ns4_A Vacuolar protein sortin 4.3 4.6E+02 0.016 22.0 2.5 23 161-183 23-45 (271)
8 2nwl_A GLTPH, glutamate sympor 4.2 1.7E+03 0.058 19.2 7.5 63 83-146 225-288 (422)
9 2e2s_A Agelenin; cystine knot, 3.9 2.3E+02 0.0078 16.4 0.2 10 159-168 3-12 (36)
10 3ul4_A Cellulosome-anchoring p 3.4 7.8E+02 0.027 18.7 3.0 33 52-84 1-33 (157)
No 1
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=8.12 E-value=2.2e+02 Score=16.41 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q 036940 87 VYFLVSNAIASSYAA 101 (199)
Q Consensus 87 ~ylv~an~i~~~Ysl 101 (199)
..++++|-++++|=+
T Consensus 17 lllLaINflVAayYF 31 (35)
T 1jb0_X 17 VLLLAINFLVAAYYF 31 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468899999998843
No 2
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=7.40 E-value=2.6e+02 Score=17.86 Aligned_cols=28 Identities=7% Similarity=-0.026 Sum_probs=22.0
Q ss_pred eeechhHHHHHHHHHHHHHHHHHHHHHH
Q 036940 81 QFMSAFVYFLVSNAIASSYAALSLAFTL 108 (199)
Q Consensus 81 ~~~~af~ylv~an~i~~~Ysllql~~~~ 108 (199)
+|.--|.+..+..+++.+|++-.+....
T Consensus 27 sd~~Ly~~t~~l~~~g~~~~~y~l~~~~ 54 (59)
T 1v54_J 27 TDNILYRVTMTLCLGGTLYSLYCLGWAS 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556678888999999999988887644
No 3
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=6.19 E-value=4.3e+02 Score=17.97 Aligned_cols=29 Identities=7% Similarity=-0.066 Sum_probs=22.8
Q ss_pred eeeechhHHHHHHHHHHHHHHHHHHHHHH
Q 036940 80 WQFMSAFVYFLVSNAIASSYAALSLAFTL 108 (199)
Q Consensus 80 f~~~~af~ylv~an~i~~~Ysllql~~~~ 108 (199)
=+|.--|.+..+..+++.+|++-.++...
T Consensus 47 rsd~~Ly~~t~~l~~~G~~~~ly~l~~~~ 75 (80)
T 2y69_J 47 ATDNILYRVTMTLCLGGTLYSLYCLGWAS 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccceeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788899999999999988887644
No 4
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=6.18 E-value=5.2e+02 Score=15.58 Aligned_cols=17 Identities=12% Similarity=0.380 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036940 172 ALVLSILGSFAFLFLVA 188 (199)
Q Consensus 172 Sv~lsflA~~~~~~~s~ 188 (199)
+++..-++.++++++.+
T Consensus 13 ~Ia~~vVGvll~vi~~l 29 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGV 29 (44)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 34444444333333333
No 5
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=7.28 E-value=1.4e+02 Score=17.83 Aligned_cols=14 Identities=29% Similarity=1.009 Sum_probs=11.1
Q ss_pred ccccccccchhhhH
Q 036940 156 NKVCNVFGGFCRNF 169 (199)
Q Consensus 156 ~~vC~~~~~FC~~~ 169 (199)
..+|.+|..||+..
T Consensus 9 ~h~C~~f~e~C~d~ 22 (40)
T 2lg4_A 9 GHICESFKSFCKDS 22 (40)
Confidence 35699999999876
No 6
>3qoe_A Heterocyst differentiation protein; MCSG, PSI biology, structural genomics, midwest center for S genomics, helix-turn-helix; 3.00A {Fischerella thermalis} PDB: 3qod_A
Probab=4.75 E-value=1.9e+02 Score=24.12 Aligned_cols=13 Identities=46% Similarity=0.559 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHH
Q 036940 123 MLDLITMGLLFSA 135 (199)
Q Consensus 123 ~~Dqv~ayLl~Sa 135 (199)
.+||+|.||-+||
T Consensus 18 AmDqimlyLAFsA 30 (302)
T 3qoe_A 18 AMDQIMLYLAFSA 30 (302)
T ss_dssp HHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999999886
No 7
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=4.26 E-value=4.6e+02 Score=22.01 Aligned_cols=23 Identities=4% Similarity=-0.045 Sum_probs=19.7
Q ss_pred cccchhhhHHHHHHHHHHHHHHH
Q 036940 161 VFGGFCRNFTAALVLSILGSFAF 183 (199)
Q Consensus 161 ~~~~FC~~~~~Sv~lsflA~~~~ 183 (199)
.+..||+++..+++-.|+..+..
T Consensus 23 Y~rnFcDK~ve~~~~~Fi~~Ii~ 45 (271)
T 3ns4_A 23 YKWNFLDKVIDIMTTNFVSNTIR 45 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34789999999999999998843
No 8
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=4.17 E-value=1.7e+03 Score=19.17 Aligned_cols=63 Identities=6% Similarity=-0.081 Sum_probs=36.0
Q ss_pred echh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhHHHHHHHHHHHHHhHHHHHHHHH
Q 036940 83 MSAF-VYFLVSNAIASSYAALSLAFTLAITRFHNNAALGLIMLDLITMGLLFSANGAAMAIGMIG 146 (199)
Q Consensus 83 ~~af-~ylv~an~i~~~Ysllql~~~~~~~~~~~~~~~~~f~~Dqv~ayLl~SaaaAA~ai~~l~ 146 (199)
...| +|++..-.....|.++....-.. ..+.++...+-...+-.+..+-.++.+|...+....
T Consensus 225 l~~l~~~i~~~~~~~~i~~~vv~~~~~~-~~~~np~~~~k~~~~a~~~Af~T~SS~AtLPv~m~~ 288 (422)
T 2nwl_A 225 VGELAKVTAAVYVGLTLQILLVYFVLLK-IYGIDPISFIKHAKDAMLTAFVTRSSSGTLPVTMRV 288 (422)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTHHHHHH-HTTCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHhccHHhHHHHHHHH
Confidence 3444 44554444445555555544333 223233344666778788787778888888877443
No 9
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=3.86 E-value=2.3e+02 Score=16.40 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=6.4
Q ss_pred cccccchhhh
Q 036940 159 CNVFGGFCRN 168 (199)
Q Consensus 159 C~~~~~FC~~ 168 (199)
|-..++||+-
T Consensus 3 Clp~n~fCn~ 12 (36)
T 2e2s_A 3 CLPHNRFCNA 12 (36)
T ss_dssp SBCTTSCCCS
T ss_pred ccCCCCCccc
Confidence 5566777763
No 10
>3ul4_A Cellulosome-anchoring protein; cohesin, type I cohesin-dockerin COMP protein-protein interaction, cell adhesion; HET: PEG; 1.95A {Clostridium thermocellum}
Probab=3.43 E-value=7.8e+02 Score=18.67 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=14.2
Q ss_pred HhhccceeEEEeeecccCCceeeeEEEEeeeec
Q 036940 52 VGVDKETQIISFTLAETMPSVQVSVTAKWQFMS 84 (199)
Q Consensus 52 M~t~~qt~~~~~~~~~~~~~~~~~~~~~f~~~~ 84 (199)
|+++.++..+.++..-.-.+-.++.+++++|.+
T Consensus 1 ~~~~~~tvqi~vg~~~~~~G~tv~VpV~l~~VP 33 (157)
T 3ul4_A 1 MASQTNTIEIIIGNVKARPGDRIEVPVSLKNVP 33 (157)
T ss_dssp -----CCCEEEECEEEECTTCEEEEEEEEESCC
T ss_pred CCCCCCeEEEEEeeEEEcCCCEEEEEEEEccCc
Confidence 445555555544433333334556666666654
Done!