Query 036940
Match_columns 199
No_of_seqs 108 out of 431
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 11:23:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036940.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036940hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0x_ f.23.20.1 (X:) Subunit 8.9 97 0.0071 15.6 1.9 14 88-101 12-25 (29)
2 d1rrza_ a.7.10.1 (A:) Glycogen 4.4 56 0.0041 19.9 -0.8 20 151-172 40-59 (66)
3 d1ppje2 f.23.12.1 (E:1-69) Iro 3.2 4.7E+02 0.034 15.6 3.0 17 125-141 32-48 (69)
4 d1o9ga_ c.66.1.29 (A:) rRNA me 2.5 3.6E+02 0.026 20.0 2.1 27 153-179 46-72 (249)
5 d2bbga_ g.6.1.1 (A:) Amb V all 2.2 2.1E+02 0.015 15.2 0.2 10 158-167 18-27 (40)
6 d2iuba2 f.17.3.1 (A:286-349) M 2.1 5.7E+02 0.042 14.2 2.3 15 185-199 50-64 (64)
7 d3cx5e2 f.23.12.1 (E:31-86) Ir 2.1 6.9E+02 0.05 14.2 3.0 17 126-142 23-39 (56)
8 d1oede_ f.36.1.1 (E:) Acetylch 1.8 7.1E+02 0.051 17.2 3.0 14 154-167 221-234 (260)
9 d2jnea1 g.41.18.1 (A:1-71) Hyp 1.8 2.8E+02 0.02 17.0 0.3 16 154-169 42-57 (71)
10 d1utca1 a.118.1.4 (A:331-355) 1.7 5E+02 0.037 12.4 1.2 12 30-41 12-23 (26)
No 1
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=8.94 E-value=97 Score=15.59 Aligned_cols=14 Identities=21% Similarity=0.339 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q 036940 88 YFLVSNAIASSYAA 101 (199)
Q Consensus 88 ylv~an~i~~~Ysl 101 (199)
-++++|-+++.|-+
T Consensus 12 lllainflvaayyf 25 (29)
T d1jb0x_ 12 LLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47888999888865
No 2
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=4.42 E-value=56 Score=19.90 Aligned_cols=20 Identities=25% Similarity=0.796 Sum_probs=13.7
Q ss_pred cccccccccccccchhhhHHHH
Q 036940 151 SHVHWNKVCNVFGGFCRNFTAA 172 (199)
Q Consensus 151 ~~~~W~~vC~~~~~FC~~~~~S 172 (199)
.+-.|. |..|.-||.++.-+
T Consensus 40 e~r~WF--c~Ry~~Yc~q~~qa 59 (66)
T d1rrza_ 40 EHRTWF--CARYAWYCQQMMQA 59 (66)
T ss_dssp HHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHH
Confidence 334465 88888889887643
No 3
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.18 E-value=4.7e+02 Score=15.62 Aligned_cols=17 Identities=12% Similarity=-0.099 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhHHHH
Q 036940 125 DLITMGLLFSANGAAMA 141 (199)
Q Consensus 125 Dqv~ayLl~SaaaAA~a 141 (199)
.+.+.||+..+++.+.+
T Consensus 32 Rk~fsYl~~g~~~v~~a 48 (69)
T d1ppje2 32 RKGFSYLVTATTTVGVA 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hceehhhhhhhHHHHHH
Confidence 36889988777666654
No 4
>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}
Probab=2.52 E-value=3.6e+02 Score=19.98 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=21.4
Q ss_pred cccccccccccchhhhHHHHHHHHHHH
Q 036940 153 VHWNKVCNVFGGFCRNFTAALVLSILG 179 (199)
Q Consensus 153 ~~W~~vC~~~~~FC~~~~~Sv~lsflA 179 (199)
..|..-+.-+|-+|..++..+=.++++
T Consensus 46 ~~w~~~~~LlDPmCGSGTilIEAAlia 72 (249)
T d1o9ga_ 46 LPGDGPVTLWDPCCGSGYLLTVLGLLH 72 (249)
T ss_dssp SSCCSCEEEEETTCTTSHHHHHHHHHT
T ss_pred hcCCCCCceeccccCccHHHHHHHHHH
Confidence 457766778899999999888777664
No 5
>d2bbga_ g.6.1.1 (A:) Amb V allergen {Giant ragweed (Ambrosia trifida), pollen [TaxId: 4214]}
Probab=2.22 E-value=2.1e+02 Score=15.16 Aligned_cols=10 Identities=30% Similarity=1.056 Sum_probs=6.3
Q ss_pred ccccccchhh
Q 036940 158 VCNVFGGFCR 167 (199)
Q Consensus 158 vC~~~~~FC~ 167 (199)
-|+..++||-
T Consensus 18 ccspigkycv 27 (40)
T d2bbga_ 18 CCSPIGKYCV 27 (40)
T ss_dssp EECSSSSSCE
T ss_pred ecccccCEEE
Confidence 3567777764
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.13 E-value=5.7e+02 Score=14.21 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=7.3
Q ss_pred HHHHHHHHHhcccCC
Q 036940 185 FLVAVAILNLHKRSQ 199 (199)
Q Consensus 185 ~~s~lS~~~L~~~~~ 199 (199)
+...+..+..+||.|
T Consensus 50 ~~~~~~~~~~f~rkk 64 (64)
T d2iuba2 50 GVIAVIMVVYFKKKK 64 (64)
T ss_dssp HHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHHhccC
Confidence 333444455666543
No 7
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.09 E-value=6.9e+02 Score=14.22 Aligned_cols=17 Identities=12% Similarity=-0.036 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhHHHHH
Q 036940 126 LITMGLLFSANGAAMAI 142 (199)
Q Consensus 126 qv~ayLl~SaaaAA~ai 142 (199)
+.+.|++..+.+...+.
T Consensus 23 r~fsY~mvGs~g~~~a~ 39 (56)
T d3cx5e2 23 RSYAYFMVGAMGLLSSA 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeehhHHHHHH
Confidence 46778887776665543
No 8
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=1.84 E-value=7.1e+02 Score=17.24 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=7.0
Q ss_pred ccccccccccchhh
Q 036940 154 HWNKVCNVFGGFCR 167 (199)
Q Consensus 154 ~W~~vC~~~~~FC~ 167 (199)
.|..+-...||+|-
T Consensus 221 eW~~vA~viDR~~l 234 (260)
T d1oede_ 221 NWVLIGKVIDKACF 234 (260)
T ss_dssp -----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58888888888774
No 9
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=1.78 E-value=2.8e+02 Score=16.98 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=12.0
Q ss_pred ccccccccccchhhhH
Q 036940 154 HWNKVCNVFGGFCRNF 169 (199)
Q Consensus 154 ~W~~vC~~~~~FC~~~ 169 (199)
+-.+.|+..|-||++.
T Consensus 42 e~LkACGAvdYFC~~c 57 (71)
T d2jnea1 42 QVLKACGAVDYFCQHG 57 (71)
T ss_dssp EEEEETTEEEEEETTT
T ss_pred HHHHhccchhhhhccC
Confidence 3457788888898864
No 10
>d1utca1 a.118.1.4 (A:331-355) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=1.72 E-value=5e+02 Score=12.44 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=8.0
Q ss_pred cchhhhhHHHHH
Q 036940 30 FKSSDVMLRILG 41 (199)
Q Consensus 30 ~~~~~l~LR~~a 41 (199)
..-.+|.||.+.
T Consensus 12 lqnpdlalr~av 23 (26)
T d1utca1 12 LQNPDLALRMAV 23 (26)
T ss_dssp TCCHHHHHHHHH
T ss_pred ccChhHHHHHHh
Confidence 445678888753
Done!