BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036943
(77 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 114 bits (286), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 53/74 (71%), Positives = 65/74 (87%)
Query: 4 RDRDPLILGRVVGDVLDNFTRTIPMRITYLNKDVNNGRELKPSEVLNQPRVEIGGDDLRT 63
RDRDPL++GRVVGDVLD F R+ +++TY +K V+NG ELKPS V +QPRVE+GG+D+RT
Sbjct: 6 RDRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRT 65
Query: 64 FYTLVMVDPDAPSP 77
FYTLVMVDPDAPSP
Sbjct: 66 FYTLVMVDPDAPSP 79
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 62/77 (80%)
Query: 1 MSSRDRDPLILGRVVGDVLDNFTRTIPMRITYLNKDVNNGRELKPSEVLNQPRVEIGGDD 60
MS RDPLI+ RVVGDVLD F R+I +++TY ++V NG L+PS+V N+PRVEIGG+D
Sbjct: 4 MSINIRDPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGED 63
Query: 61 LRTFYTLVMVDPDAPSP 77
LR FYTLVMVDPD PSP
Sbjct: 64 LRNFYTLVMVDPDVPSP 80
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 97.4 bits (241), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 1 MSSRDRDPLILGRVVGDVLDNFTRTIPMRITYLNKDVNNGRELKPSEVLNQPRVEIGGDD 60
M +R +PLI+GRVVGDVLD FT T M ++Y K V+NG EL PS V ++PRVEI G D
Sbjct: 7 MGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGD 66
Query: 61 LRTFYTLVMVDPDAPSP 77
LR+F+TLVM+DPD P P
Sbjct: 67 LRSFFTLVMIDPDVPGP 83
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 7 DPLILGRVVGDVLDNFTRTIPMRITYLN----KDVNNGRELKPSEVLNQPRVEIGGDDLR 62
DPL++GRV+GDV+D+FT T+ M + Y + K V NG EL PS V + PRVE+ G D+R
Sbjct: 8 DPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGDMR 67
Query: 63 TFYTLVMVDPDAPSP 77
+F+TL+M DPD P P
Sbjct: 68 SFFTLIMTDPDVPGP 82
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In
Complex With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In
Complex With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex
With O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 27 PMRITYLNKDVNN-GRELKPSEVLNQP-RVEIGGDDLRTFYTLVMVDPDAPS 76
P+ +TY V+ G+ L P++V N+P + G D YTLV+ DPDAPS
Sbjct: 24 PLHVTYAGAAVDELGKVLTPTQVKNRPTSISWDGLDSGKLYTLVLTDPDAPS 75
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 27 PMRITYLNKDVNN-GRELKPSEVLNQP-RVEIGGDDLRTFYTLVMVDPDAPS 76
P+++ Y +V+ G+ L P++V N+P + G D YTLV+ DPDAPS
Sbjct: 23 PLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPS 74
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding
Protein From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding
Protein From Bovine Brain
Length = 186
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 27 PMRITYLNKDVNN-GRELKPSEVLNQP-RVEIGGDDLRTFYTLVMVDPDAPS 76
P+++ Y +V+ G+ L P++V N+P + G D YTLV+ DPDAPS
Sbjct: 23 PLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPGKLYTLVLTDPDAPS 74
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 14 VVGDVLDNFTRTIPMRITYLNKDVNNGRELKPSEVLNQPRVEIGGDDLRT-FYTLVMVDP 72
+V DVLD I + +V G EL P++V +QP V G + ++ TL+MVDP
Sbjct: 4 IVPDVLDAVPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDP 63
Query: 73 DAPS 76
DAP+
Sbjct: 64 DAPT 67
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding
Protein-2)
Length = 183
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 28 MRITYLNKDVNN-GRELKPSEVLNQP-RVEIGGDDLRTFYTLVMVDPDAPS 76
+R+TY +V G+ L P++V ++P + G D YTL++ DPDAPS
Sbjct: 21 LRVTYTEAEVEELGQVLTPTQVKHRPGSISWDGLDPGKLYTLILTDPDAPS 71
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 28 MRITYLNKDVNN-GRELKPSEVLNQPR-VEIGGDDLRTFYTLVMVDPDAPS 76
+R+ Y V+ G+ L P++V+N+P + G D YTLV+ DPDAPS
Sbjct: 28 LRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPS 78
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 28 MRITYLNKDVNN-GRELKPSEVLNQPR-VEIGGDDLRTFYTLVMVDPDAPS 76
+R+ Y V+ G+ L P++V+N+P + G D YTLV+ DPDAPS
Sbjct: 25 LRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPS 75
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/18 (72%), Positives = 14/18 (77%), Gaps = 3/18 (16%)
Query: 59 DDLRTFYTLVMVDPDAPS 76
DDL +TLVM DPDAPS
Sbjct: 87 DDL---FTLVMTDPDAPS 101
>pdb|1OQC|A Chain A, The Crystal Structure Of Augmenter Of Liver
Regeneration: A Mammalian Fad Dependent Sulfhydryl
Oxidase
pdb|1OQC|B Chain B, The Crystal Structure Of Augmenter Of Liver
Regeneration: A Mammalian Fad Dependent Sulfhydryl
Oxidase
pdb|1OQC|C Chain C, The Crystal Structure Of Augmenter Of Liver
Regeneration: A Mammalian Fad Dependent Sulfhydryl
Oxidase
pdb|1OQC|D Chain D, The Crystal Structure Of Augmenter Of Liver
Regeneration: A Mammalian Fad Dependent Sulfhydryl
Oxidase
Length = 125
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 37 VNNGRELKPSEVLNQPRVEIGGDDLRTFYTLVMVDPDAPSP 77
R++K E Q R E+G + +TL PD P+P
Sbjct: 3 TQQKRDIKFREDCPQDREELGRNTWAFLHTLAAYYPDMPTP 43
>pdb|3R7C|A Chain A, The Structure Of A Hexahestidine-Tagged Form Of
Augmenter Of Liver Regeneration Reveals A Novel
Cd(2)cl(4)o(6) Cluster That Aids In Crystal Packing
pdb|3R7C|B Chain B, The Structure Of A Hexahestidine-Tagged Form Of
Augmenter Of Liver Regeneration Reveals A Novel
Cd(2)cl(4)o(6) Cluster That Aids In Crystal Packing
pdb|3R7C|C Chain C, The Structure Of A Hexahestidine-Tagged Form Of
Augmenter Of Liver Regeneration Reveals A Novel
Cd(2)cl(4)o(6) Cluster That Aids In Crystal Packing
pdb|3R7C|D Chain D, The Structure Of A Hexahestidine-Tagged Form Of
Augmenter Of Liver Regeneration Reveals A Novel
Cd(2)cl(4)o(6) Cluster That Aids In Crystal Packing
Length = 139
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 37 VNNGRELKPSEVLNQPRVEIGGDDLRTFYTLVMVDPDAPSP 77
R++K E Q R E+G + +TL PD P+P
Sbjct: 17 TQQKRDIKFREDCPQDREELGRNTWAFLHTLAAYYPDMPTP 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.141 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,422,750
Number of Sequences: 62578
Number of extensions: 87470
Number of successful extensions: 158
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 143
Number of HSP's gapped (non-prelim): 15
length of query: 77
length of database: 14,973,337
effective HSP length: 46
effective length of query: 31
effective length of database: 12,094,749
effective search space: 374937219
effective search space used: 374937219
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)