Query 036943
Match_columns 77
No_of_seqs 110 out of 689
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 11:26:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wko_A Terminal flower 1 prote 99.9 1.6E-24 5.6E-29 143.8 7.1 77 1-77 7-83 (180)
2 3axy_A Protein heading DATE 3A 99.9 7.2E-24 2.5E-28 139.7 7.5 75 1-77 5-79 (170)
3 2gzq_A Phosphatidylethanolamin 99.9 2.8E-22 9.6E-27 135.0 5.5 75 3-77 12-91 (200)
4 2iqy_A Phosphatidylethanolamin 99.8 1E-20 3.6E-25 126.4 6.8 75 2-77 1-79 (190)
5 1wpx_B Carboxypeptidase Y inhi 99.8 2.8E-21 9.5E-26 131.1 4.0 75 3-77 10-102 (220)
6 2jyz_A CG7054-PA, GH14779P, PE 99.8 5.5E-19 1.9E-23 116.9 6.3 65 12-77 2-68 (179)
7 1fux_A Hypothetical 19.5 kDa p 98.5 1.1E-07 3.6E-12 62.2 4.5 43 35-77 8-60 (166)
8 3n08_A Putative phosphatidylet 97.9 8.6E-06 2.9E-10 52.6 3.8 28 50-77 28-56 (153)
9 1fjj_A Hypothetical 17.1 kDa p 97.9 1.7E-05 5.7E-10 51.3 5.1 28 50-77 31-59 (159)
10 2evv_A Hypothetical protein HP 97.5 2.1E-05 7.1E-10 53.1 0.8 37 40-76 47-85 (207)
11 3jyw_L 60S ribosomal protein L 44.4 20 0.00068 23.7 3.0 16 61-76 125-140 (192)
12 3j21_M 50S ribosomal protein L 35.4 14 0.00048 24.5 1.2 14 62-75 125-138 (194)
13 4a17_L RPL15, ribosomal protei 34.8 15 0.0005 24.6 1.2 14 62-75 127-140 (204)
14 1k5j_A Nucleoplasmin core; bet 34.5 24 0.00083 21.6 2.1 33 12-44 83-119 (124)
15 3iz5_P 60S ribosomal protein L 32.6 14 0.00048 24.6 0.9 14 62-75 127-140 (204)
16 1ffk_I Ribosomal protein L15E; 31.0 32 0.0011 22.8 2.3 14 62-75 126-139 (194)
17 2ccl_A Cellulosomal scaffoldin 28.0 76 0.0026 19.9 3.7 45 25-71 37-86 (158)
18 1vq8_M 50S ribosomal protein L 25.5 27 0.00092 23.1 1.3 14 62-75 126-139 (194)
19 4a18_P RPL38, ribosomal protei 25.4 35 0.0012 19.9 1.6 21 53-73 39-59 (89)
No 1
>1wko_A Terminal flower 1 protein; CIS-peptide, PEBP, signaling protein; 1.80A {Arabidopsis thaliana} PDB: 1qou_A
Probab=99.91 E-value=1.6e-24 Score=143.82 Aligned_cols=77 Identities=61% Similarity=1.007 Sum_probs=70.9
Q ss_pred CCCccccccccCCcccccCCCCCCCceEEEEECCeEeCCCceeCccccccCCeEEEecCCCCCeEEEEEeCCCCCCC
Q 036943 1 MSSRDRDPLILGRVVGDVLDNFTRTIPMRITYLNKDVNNGRELKPSEVLNQPRVEIGGDDLRTFYTLVMVDPDAPSP 77 (77)
Q Consensus 1 m~~~~~~~l~~~~Iipdvl~~f~P~~~L~V~y~~~~V~~G~~l~~~~~~~~P~i~~~~~~~~~~yTLvmvDPDaPsr 77 (77)
|.+++.++|++++||||||+.|.|+..|+|+|++..|.+|+.|++++++..|+|+|.+.+.+.+|||+|+|||||++
T Consensus 7 ~~~~~~~~l~~~~vipdvl~~f~P~~~l~V~y~s~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DPDaP~~ 83 (180)
T 1wko_A 7 MGTRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLRSFFTLVMIDPDVPGP 83 (180)
T ss_dssp ---CTTHHHHHTTHHHHTBCCCCCCSEEEEEETTEECCTTCBCCGGGGSSCCEEEEESSCTTCEEEEEEEECSCSBT
T ss_pred HHHHHHHHHHhCCCCCCccCCcCCCeeEEEEECCeEcCCCCCcCHHHhCcCCeEEEecCCCCceEEEEEeCCCCCCC
Confidence 55689999999999999999999999999999999999999999999999999999997667899999999999975
No 2
>3axy_A Protein heading DATE 3A; phosphatidylethanolamine-binding protein, 14-3-3 protein, BZ protein, floral induction; HET: SEP; 2.40A {Oryza sativa japonica group} PDB: 1wkp_A
Probab=99.90 E-value=7.2e-24 Score=139.66 Aligned_cols=75 Identities=69% Similarity=1.158 Sum_probs=70.6
Q ss_pred CCCccccccccCCcccccCCCCCCCceEEEEECCeEeCCCceeCccccccCCeEEEecCCCCCeEEEEEeCCCCCCC
Q 036943 1 MSSRDRDPLILGRVVGDVLDNFTRTIPMRITYLNKDVNNGRELKPSEVLNQPRVEIGGDDLRTFYTLVMVDPDAPSP 77 (77)
Q Consensus 1 m~~~~~~~l~~~~Iipdvl~~f~P~~~L~V~y~~~~V~~G~~l~~~~~~~~P~i~~~~~~~~~~yTLvmvDPDaPsr 77 (77)
|+. +++|++++||||||+.|.|++.|+|+|++..|.+|+.|+++++...|+|+|.+.+.+++|||+|+|||||++
T Consensus 5 m~~--~~~l~~~~vipdvl~~F~P~~~l~v~y~s~~v~~G~~l~~~~~~~~P~l~~~~~~~~~~ytlvm~DpDaP~~ 79 (170)
T 3axy_A 5 MRD--RDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRTFYTLVMVDPDAPSP 79 (170)
T ss_dssp CCT--TCHHHHTTHHHHTBCCCCCCSCEEEEETTEECCTTEECCGGGSSSCCEEEECCSCTTCEEEEEEEETTCSCT
T ss_pred cch--hchhhhCCccccccCCcCCceEEEEEECCeEcCCCCEeCHHHhCcCCeEEEeCCCCCcEEEEEEECCCCCCC
Confidence 652 799999999999999999999999999999999999999999999999999987667999999999999985
No 3
>2gzq_A Phosphatidylethanolamine-binding protein; structural genomics, PSI, protein structure initiative; HET: MSE; 1.30A {Plasmodium vivax} PDB: 2r77_A
Probab=99.86 E-value=2.8e-22 Score=134.95 Aligned_cols=75 Identities=28% Similarity=0.449 Sum_probs=68.4
Q ss_pred CccccccccCCcccccCC--CCCCCceEEEEEC-CeEeCCCceeCccccccCCe-EEEecCCC-CCeEEEEEeCCCCCCC
Q 036943 3 SRDRDPLILGRVVGDVLD--NFTRTIPMRITYL-NKDVNNGRELKPSEVLNQPR-VEIGGDDL-RTFYTLVMVDPDAPSP 77 (77)
Q Consensus 3 ~~~~~~l~~~~Iipdvl~--~f~P~~~L~V~y~-~~~V~~G~~l~~~~~~~~P~-i~~~~~~~-~~~yTLvmvDPDaPsr 77 (77)
+.+.++|++++||||||+ .|.|++.|+|+|+ +..|.+|+.|++++++..|+ |+|.+.+. .++|||+|+|||||+|
T Consensus 12 ~~~~~~l~~~~IipDvl~~~~f~p~~~L~V~y~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~~ytLvm~DPDaP~~ 91 (200)
T 2gzq_A 12 PPTIEELKREKIIPHVFPDENVDLTVDMYISFKSGKEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFMIDPDFPSR 91 (200)
T ss_dssp SCCHHHHHHTTHHHHTSSSSCCCCCCCEEEEEETTEEECSSCEEESTTCSSCCSEEEESSCCCTTEEEEEEEEETTCSCS
T ss_pred HHHHHHHHhCCccCcccCCCCCcceeEEEEEECCCcccCCCCEeCHHHHhCCCceEEEccCCCCCceEEEEEECCCCCCC
Confidence 467899999999999996 4999999999997 68999999999999999998 99998643 6899999999999985
No 4
>2iqy_A Phosphatidylethanolamine-binding protein 1; alpha-beta, hydrolase inhibitor; 1.40A {Rattus norvegicus} PDB: 2iqx_A 1b7a_A* 1a44_A 1beh_A 1bd9_A 2l7w_A 2qyq_A* 1kn3_A
Probab=99.83 E-value=1e-20 Score=126.37 Aligned_cols=75 Identities=31% Similarity=0.467 Sum_probs=69.1
Q ss_pred CCcccccccc--CCcccccCCCCCCCceEEEEE-CCeEeCCCceeCccccccCCe-EEEecCCCCCeEEEEEeCCCCCCC
Q 036943 2 SSRDRDPLIL--GRVVGDVLDNFTRTIPMRITY-LNKDVNNGRELKPSEVLNQPR-VEIGGDDLRTFYTLVMVDPDAPSP 77 (77)
Q Consensus 2 ~~~~~~~l~~--~~Iipdvl~~f~P~~~L~V~y-~~~~V~~G~~l~~~~~~~~P~-i~~~~~~~~~~yTLvmvDPDaPsr 77 (77)
|+++.++|++ ++||||||+. .|+..|+|+| ++..|.+|+.|+++++...|+ |+|.+.+.+++|||+|+|||||++
T Consensus 1 ~~~~~~~~~~~~~~vipdvl~~-~p~~~l~v~~~~~~~v~~G~~l~~~~~~~~P~~l~~~~~~~~~~ytlvm~DpDaP~~ 79 (190)
T 2iqy_A 1 SNAMAADISQWAGPLSLQEVDE-PPQHALRVDYGGVTVDELGKVLTPTQVMNRPSSISWDGLDPGKLYTLVLTDPDAPSR 79 (190)
T ss_dssp CCCSSCCGGGTTSTTCGGGTSS-CCSEECEEECSSCBCCSTTEECCGGGGSSCCSEEECTTCCTTSEEEEEEEESSSSCS
T ss_pred ChHHHHHHHHhcCccCCcCcCC-CCCceEEEEECCCcccCCCCEECHHHHhCCCceEEEccCCCCCEEEEEEECCCCCCC
Confidence 4677899999 9999999998 9999999999 457899999999999999999 999987657999999999999985
No 5
>1wpx_B Carboxypeptidase Y inhibitor; carboxypeptidase inhibitor, serine proteinase inhibitor, Pro inhibitor complex; HET: NAG NDG; 2.70A {Saccharomyces cerevisiae} SCOP: b.17.1.1
Probab=99.82 E-value=2.8e-21 Score=131.14 Aligned_cols=75 Identities=25% Similarity=0.400 Sum_probs=67.2
Q ss_pred CccccccccCCcccccCCC--CCCCceEEEEECC-eEeCCCceeCccccccCCeEEEec----------C-----CCCCe
Q 036943 3 SRDRDPLILGRVVGDVLDN--FTRTIPMRITYLN-KDVNNGRELKPSEVLNQPRVEIGG----------D-----DLRTF 64 (77)
Q Consensus 3 ~~~~~~l~~~~Iipdvl~~--f~P~~~L~V~y~~-~~V~~G~~l~~~~~~~~P~i~~~~----------~-----~~~~~ 64 (77)
++++++|++++||||||+. |.|+..|+|+|++ ..|++|+.|++++++.+|+|+|.. . +..+.
T Consensus 10 ~~~~~~l~~~~IipDvl~~~~F~P~~~L~V~y~~~~~v~~G~~l~~~~t~~~P~v~~~~~~~~~~~~~~~~~~~p~~~~~ 89 (220)
T 1wpx_B 10 QASIDSYKKHGILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAYVPQDDDL 89 (220)
T ss_dssp HHHHHHHHHTTHHHHTSCCTTCCCSEEEEEEEETTEEECSSCBCCGGGGSSCCEEEEEEETTCC------CCCCCCSSCC
T ss_pred HHHHHHHHhCCCCccccCCcCCCCceEEEEEECCCcEeCCCCCcCHHHhcCCCeeEeCCCCCcccccccccccCCCCCce
Confidence 4678999999999999999 9999999999975 779999999999999999999982 1 23689
Q ss_pred EEEEEeCCCCCCC
Q 036943 65 YTLVMVDPDAPSP 77 (77)
Q Consensus 65 yTLvmvDPDaPsr 77 (77)
|+|+|+|||||++
T Consensus 90 ~~lvm~DpDaP~~ 102 (220)
T 1wpx_B 90 FTLVMTDPDAPSK 102 (220)
T ss_dssp EEEEEEESSSSCS
T ss_pred EEEEEECCCCCCC
Confidence 9999999999985
No 6
>2jyz_A CG7054-PA, GH14779P, PEBP; PEBP/RKIP, molecular modeling, chemical shift variations, titration, unknown function; NMR {Drosophila melanogaster}
Probab=99.77 E-value=5.5e-19 Score=116.92 Aligned_cols=65 Identities=38% Similarity=0.636 Sum_probs=59.8
Q ss_pred CCcccccCCCCCCCceEEEEEC-CeEeCCCceeCccccccCCeEEEecCCCC-CeEEEEEeCCCCCCC
Q 036943 12 GRVVGDVLDNFTRTIPMRITYL-NKDVNNGRELKPSEVLNQPRVEIGGDDLR-TFYTLVMVDPDAPSP 77 (77)
Q Consensus 12 ~~Iipdvl~~f~P~~~L~V~y~-~~~V~~G~~l~~~~~~~~P~i~~~~~~~~-~~yTLvmvDPDaPsr 77 (77)
++||||||+. .|+..|+|+|+ +..|.+|+.|++++++..|+|+|.+.+.+ +.|||+|+|||||++
T Consensus 2 ~~vipdvl~~-~P~~~l~V~y~~~~~v~~G~~l~~~~~~~~P~l~~~~~p~~t~~ytlvm~DpDaP~~ 68 (179)
T 2jyz_A 2 DDIVPDVLDA-VPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLEGKSNLLTLLMVDPDAPTR 68 (179)
T ss_dssp CCBTTTTBSS-CCSEECEEESSSSCCBCTTEECCSSCTTSCCEEECTTTCCSCSEEEEEEECCCSSCT
T ss_pred CcccCcCcCC-CCcCeEEEEECCCcccCCCCEeCHHHhccCCeEEEeCCCCCceeEEEEEeCCCCCCC
Confidence 6899999999 99999999996 57899999999999999999999987543 899999999999985
No 7
>1fux_A Hypothetical 19.5 kDa protein in EMRE-RUS intergenic region; beta protein, unknown function; 1.81A {Escherichia coli} SCOP: b.17.1.2
Probab=98.51 E-value=1.1e-07 Score=62.16 Aligned_cols=43 Identities=26% Similarity=0.529 Sum_probs=36.5
Q ss_pred eEeCCCceeCcccccc---------CCeEEEecCC-CCCeEEEEEeCCCCCCC
Q 036943 35 KDVNNGRELKPSEVLN---------QPRVEIGGDD-LRTFYTLVMVDPDAPSP 77 (77)
Q Consensus 35 ~~V~~G~~l~~~~~~~---------~P~i~~~~~~-~~~~yTLvmvDPDaPsr 77 (77)
..+..|+.|.++++.. .|.|+|...+ ..+.|+|+|+|||||++
T Consensus 8 ~~~~~g~~ip~~~~~~~~~~~G~n~sP~l~w~~~P~~t~s~ali~~DPDAP~~ 60 (166)
T 1fux_A 8 NEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTG 60 (166)
T ss_dssp SSCCTTSBCCGGGBCEETTEECCCCCCCEEEECCCTTCCEEEEEEEETTSTTT
T ss_pred cCcCCcCCCCHHHhccccccCCCCcCCeEEEeCCCCCCeEEEEEEECCCCCCC
Confidence 4577899999988877 8999999864 25899999999999974
No 8
>3n08_A Putative phosphatidylethanolamine-binding protein; eukarytic homolog RAF kinase inhibitor protein (RKIP). csgid structural genomics; 1.25A {Chlamydia trachomatis} SCOP: b.17.1.0
Probab=97.92 E-value=8.6e-06 Score=52.56 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=23.0
Q ss_pred cCCeEEEecCCC-CCeEEEEEeCCCCCCC
Q 036943 50 NQPRVEIGGDDL-RTFYTLVMVDPDAPSP 77 (77)
Q Consensus 50 ~~P~i~~~~~~~-~~~yTLvmvDPDaPsr 77 (77)
.-|.++|...+. .+.|+|+|+|||||+|
T Consensus 28 ~SP~l~w~~~P~~tks~ali~~DpDAPs~ 56 (153)
T 3n08_A 28 ISPPLSFSDVPREAKSLVLIVEDPDVPPS 56 (153)
T ss_dssp CCCCEEEECCCTTCCEEEEEEEETTSCTT
T ss_pred cCcEEEEcCCCCCCeEEEEEEECCCCCCc
Confidence 357799998653 5899999999999974
No 9
>1fjj_A Hypothetical 17.1 kDa protein in MODC-BIOA intergenic region; PEPB family, lipid binding protein; HET: MSE EPE; 1.66A {Escherichia coli} SCOP: b.17.1.2 PDB: 1vi3_A*
Probab=97.91 E-value=1.7e-05 Score=51.33 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.0
Q ss_pred cCCeEEEecCC-CCCeEEEEEeCCCCCCC
Q 036943 50 NQPRVEIGGDD-LRTFYTLVMVDPDAPSP 77 (77)
Q Consensus 50 ~~P~i~~~~~~-~~~~yTLvmvDPDaPsr 77 (77)
..|.|+|...+ ..+.|+|+|+|||||++
T Consensus 31 ~sP~l~w~~~P~~t~s~ali~~DPDAP~~ 59 (159)
T 1fjj_A 31 ISPHLAWDDVPAGTKSFVVTCYDPDAPTG 59 (159)
T ss_dssp CCCCEEEECCCTTCCEEEEEEEETTSTTT
T ss_pred cCCeEEEcCCCCCCeEEEEEEECCCCCCC
Confidence 36779998864 36899999999999974
No 10
>2evv_A Hypothetical protein HP0218; alpha-beta structure, dimer, structural genomics, PSI, prote structure initiative; HET: MSE; 2.59A {Helicobacter pylori}
Probab=97.51 E-value=2.1e-05 Score=53.08 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=26.2
Q ss_pred CceeCcc--ccccCCeEEEecCCCCCeEEEEEeCCCCCC
Q 036943 40 GRELKPS--EVLNQPRVEIGGDDLRTFYTLVMVDPDAPS 76 (77)
Q Consensus 40 G~~l~~~--~~~~~P~i~~~~~~~~~~yTLvmvDPDaPs 76 (77)
|..++|. .-..-|.|+|...+..+.|+|+|+|||||+
T Consensus 47 G~~~sP~~~~p~~Sp~L~W~~~~gtks~aLvm~DPDAP~ 85 (207)
T 2evv_A 47 PKAFLNSNGLPTYSPKISWQKVEGAQSYALELIDHDAQK 85 (207)
T ss_dssp CGGGBCTTSCBCCCCCEEECCCTTCSEEEEEEEETTHHH
T ss_pred CCCcCCccCCCCccceEEEecCCCCeEEEEEEECCCCCC
Confidence 5555552 112235699977654789999999999996
No 11
>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L
Probab=44.40 E-value=20 Score=23.69 Aligned_cols=16 Identities=19% Similarity=0.648 Sum_probs=13.2
Q ss_pred CCCeEEEEEeCCCCCC
Q 036943 61 LRTFYTLVMVDPDAPS 76 (77)
Q Consensus 61 ~~~~yTLvmvDPDaPs 76 (77)
.-+.|-+|||||.-|.
T Consensus 125 ~yK~fEVILVDp~H~a 140 (192)
T 3jyw_L 125 TYKYFEVILVDPQHKA 140 (192)
T ss_dssp SCEEEEEEEECSSCSS
T ss_pred CcceEEEEEecCCchh
Confidence 3589999999998764
No 12
>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.41 E-value=14 Score=24.48 Aligned_cols=14 Identities=36% Similarity=0.928 Sum_probs=11.8
Q ss_pred CCeEEEEEeCCCCC
Q 036943 62 RTFYTLVMVDPDAP 75 (77)
Q Consensus 62 ~~~yTLvmvDPDaP 75 (77)
-+.|-+|||||.-|
T Consensus 125 yK~fEVILVDp~H~ 138 (194)
T 3j21_M 125 YKWFEVIMVDPHHP 138 (194)
T ss_dssp EEEEEEEEECSSCH
T ss_pred ceeEEEEEEcCCCh
Confidence 47999999999754
No 13
>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L
Probab=34.77 E-value=15 Score=24.58 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=11.8
Q ss_pred CCeEEEEEeCCCCC
Q 036943 62 RTFYTLVMVDPDAP 75 (77)
Q Consensus 62 ~~~yTLvmvDPDaP 75 (77)
-+.|-+|||||.-|
T Consensus 127 yK~fEVILVDp~H~ 140 (204)
T 4a17_L 127 YKFYEVILADPSHN 140 (204)
T ss_dssp EEEEEEEEECTTSH
T ss_pred cceEEEEEecCCch
Confidence 47999999999754
No 14
>1k5j_A Nucleoplasmin core; beta-barrel, jellyroll, beta-bulge, pentamer, chaperone; 2.30A {Xenopus laevis} SCOP: b.121.3.1 PDB: 2vtx_A 2vtx_J
Probab=34.52 E-value=24 Score=21.62 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=22.7
Q ss_pred CCccccc-CCC--CCCCceEEEEECCeEeC-CCceeC
Q 036943 12 GRVVGDV-LDN--FTRTIPMRITYLNKDVN-NGRELK 44 (77)
Q Consensus 12 ~~Iipdv-l~~--f~P~~~L~V~y~~~~V~-~G~~l~ 44 (77)
.++.|++ +.. |.|.+.+++..+++.|+ -|+.+.
T Consensus 83 ~s~~p~vsl~g~e~~pPVtF~L~~GSGPVhisGqhlv 119 (124)
T 1k5j_A 83 PSILPMATMVGIELTPPVTFRLKAGSGPLYISGQHVA 119 (124)
T ss_dssp TTTBCEEECCSCEECSCEEEEEEECCCCEEEEEEEEC
T ss_pred ccccccEEeCCceeCCCEEEEEEEcCCCeEEEeEEEE
Confidence 4677776 454 36888888888877774 376653
No 15
>3iz5_P 60S ribosomal protein L15 (L15E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_P 2zkr_m
Probab=32.60 E-value=14 Score=24.64 Aligned_cols=14 Identities=14% Similarity=0.541 Sum_probs=11.9
Q ss_pred CCeEEEEEeCCCCC
Q 036943 62 RTFYTLVMVDPDAP 75 (77)
Q Consensus 62 ~~~yTLvmvDPDaP 75 (77)
-+.|-+|||||.-|
T Consensus 127 yK~fEVILVDp~H~ 140 (204)
T 3iz5_P 127 YKYFEIILVDVAHS 140 (204)
T ss_dssp EEEEEEEEEESSSH
T ss_pred cceEEEEEecCCch
Confidence 47999999999754
No 16
>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2
Probab=30.98 E-value=32 Score=22.77 Aligned_cols=14 Identities=29% Similarity=0.793 Sum_probs=11.8
Q ss_pred CCeEEEEEeCCCCC
Q 036943 62 RTFYTLVMVDPDAP 75 (77)
Q Consensus 62 ~~~yTLvmvDPDaP 75 (77)
-+.|-+|||||.-|
T Consensus 126 yK~yEVILVDp~H~ 139 (194)
T 1ffk_I 126 YKWFEVILVDRDHP 139 (194)
T ss_pred eeEEEEEEEcCCcH
Confidence 46899999999765
No 17
>2ccl_A Cellulosomal scaffolding protein A; cell adhesion, cohesin/dockerin complex, cellulosome, cohesi dockerin, scaffolding, cellulose degradation; 2.03A {Clostridium thermocellum} SCOP: b.2.2.2 PDB: 1ohz_A
Probab=28.02 E-value=76 Score=19.94 Aligned_cols=45 Identities=7% Similarity=0.091 Sum_probs=27.6
Q ss_pred CceEEEEECC-----eEeCCCceeCccccccCCeEEEecCCCCCeEEEEEeC
Q 036943 25 TIPMRITYLN-----KDVNNGRELKPSEVLNQPRVEIGGDDLRTFYTLVMVD 71 (77)
Q Consensus 25 ~~~L~V~y~~-----~~V~~G~~l~~~~~~~~P~i~~~~~~~~~~yTLvmvD 71 (77)
++.+.|+|.. ..|.+|..+.-.. ..+.+.+...+.+..+.+++.|
T Consensus 37 s~df~l~YD~~~Lev~sV~~G~iv~~~~--~~~~F~~~~~~~~G~i~~l~~d 86 (158)
T 2ccl_A 37 NCDFVFRYDPNVLEIIGIDPGDIIVDPN--PTKSFDTAIYPDRKIIVFLFAE 86 (158)
T ss_dssp EEEEEEECCTTTEEEEEEEECTTCCCSS--GGGTEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEEECCcceEEEeecCcceecCCC--cccccceeeecCCCEEEEEEee
Confidence 4678999953 4578899883322 2245655554335666777664
No 18
>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ...
Probab=25.51 E-value=27 Score=23.11 Aligned_cols=14 Identities=21% Similarity=0.833 Sum_probs=11.5
Q ss_pred CCeEEEEEeCCCCC
Q 036943 62 RTFYTLVMVDPDAP 75 (77)
Q Consensus 62 ~~~yTLvmvDPDaP 75 (77)
-+.|-+|||||.-|
T Consensus 126 yK~yEVILVDp~H~ 139 (194)
T 1vq8_M 126 QKWHEVILIDPNHP 139 (194)
T ss_dssp EEEEEEEEECTTCH
T ss_pred eeEEEEEEEcCCcH
Confidence 46899999999754
No 19
>4a18_P RPL38, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_P 4a1b_P 4a1d_P
Probab=25.40 E-value=35 Score=19.86 Aligned_cols=21 Identities=19% Similarity=0.282 Sum_probs=14.2
Q ss_pred eEEEecCCCCCeEEEEEeCCC
Q 036943 53 RVEIGGDDLRTFYTLVMVDPD 73 (77)
Q Consensus 53 ~i~~~~~~~~~~yTLvmvDPD 73 (77)
.+.|...-..-+|||++.|.+
T Consensus 39 ~tKFKvRcsryLYTLvv~D~~ 59 (89)
T 4a18_P 39 ITKFKLRGKKYLYTFKTADPK 59 (89)
T ss_dssp CEEEEEECSSCEEEEEECSHH
T ss_pred ceEEEEEecCceEEEEeCCHH
Confidence 345544334789999999864
Done!