BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036944
(370 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42751|CCD11_ARATH Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3
Length = 339
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 13/206 (6%)
Query: 1 MDFDSGNPLHSFEQQALEKFFNEERESMAAEGY-----AVSKEATLRKVALNVILKNSKC 55
+DF S + S+ ++ F +ER + Y S +A+ R+ ++ ILK
Sbjct: 37 VDFSSSE-VDSWPGDSIACFIEDERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAY 95
Query: 56 FNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFE 115
+NF YLA+NY D F+ +LP G + L A+ CL+LA K+ ++
Sbjct: 96 YNFQPLTAYLAVNYMDRFLYARRLPETSGW---PMQLLAVACLSLAAKMEEILVPSLFDF 152
Query: 116 RDNNLNEDYK-RHILSMELQILKGINWRLRAVTAMYFKEFFVGKI-PVGK--GIMRRTLN 171
+ + ++ + I MEL +L ++WRLR+VT F FF KI P G G
Sbjct: 153 QVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKIDPSGTFLGFFISHAT 212
Query: 172 EIIIQAQGDINFTQYKPSVMAASSLL 197
EII+ + +F +Y PS +AA+++L
Sbjct: 213 EIILSNIKEASFLEYWPSSIAAAAIL 238
>sp|Q9ZR04|CCD61_ARATH Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=3 SV=1
Length = 302
Score = 75.5 bits (184), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 106/221 (47%), Gaps = 31/221 (14%)
Query: 42 RKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLA 101
R A++ I + S+ F+ D + YLA+NY D F+S +P + + L ++ C++L+
Sbjct: 58 RNQAISSITQYSRKFD-DPSLTYLAVNYLDRFLSSEDMPQSKPWI---LKLISLSCVSLS 113
Query: 102 WKVRNQAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPV 161
K+R + + + I ME IL + WR+R+VT F FF+ +
Sbjct: 114 AKMRKPDMSVSDLPVEGEFFD--AQMIERMENVILGALKWRMRSVTPFSFLAFFISLFEL 171
Query: 162 G-------KGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTA----CRLLYP---NE 207
K ++ +++ Q DI+F ++KPSV+A ++LL A C L +P N
Sbjct: 172 KEEDPLLLKHSLKSQTSDLTFSLQHDISFLEFKPSVIAGAALLFASFELCPLQFPCFSNR 231
Query: 208 YNQCERDILATKHIKEEELESCLKRTYEMCMDKQILLERNE 248
NQC ++ ++EL C Y+ ++ I++ NE
Sbjct: 232 INQC-------TYVNKDELMEC----YKAIQERDIIVGENE 261
>sp|Q0J233|CCD21_ORYSJ Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2
Length = 308
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 77/165 (46%), Gaps = 13/165 (7%)
Query: 36 SKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAI 95
S + R +++ ILK + F YLA+NY D F+S LP G + L A+
Sbjct: 76 SIDPAARAESVSWILKVQEYNGFLPLTAYLAVNYMDRFLSLRHLPEGQGWA---MQLLAV 132
Query: 96 CCLTLAWKVRNQAF-RFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEF 154
CL+LA K+ + + + + R I ME IL +NWRLR+VT F +F
Sbjct: 133 ACLSLAAKMEETLVPSLLDLQVECSRYVFEPRTICRMEFLILTALNWRLRSVTPFTFIDF 192
Query: 155 FVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTA 199
F K N ++ A DI F + PS MAA+++L A
Sbjct: 193 FACK---------HISNAMVQNANSDIQFLDHCPSSMAAAAVLCA 228
>sp|Q8LGA1|CCD41_ARATH Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2
Length = 308
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 42 RKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLA 101
R+ ALN I K + F LAMNY D F+S + LP+ G + + L A+ CL+LA
Sbjct: 78 RRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWI---LQLLAVACLSLA 134
Query: 102 WKV-RNQAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIP 160
K+ + I + + + + MEL +L + WRLRA+T + +F+ K+
Sbjct: 135 AKIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMS 194
Query: 161 V-----GKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTA 199
++ R+L I +G I+F +++PS +AA+ L+
Sbjct: 195 KCDQEPSNTLISRSLQVIASTTKG-IDFLEFRPSEVAAAVALSV 237
>sp|Q8LHA8|CCD22_ORYSJ Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1
Length = 356
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 25/165 (15%)
Query: 38 EATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICC 97
E + RK A++ I K +NF YLA+NY D F+S LP+ ++ L ++ C
Sbjct: 91 ECSWRKDAIDWICKVHSYYNFGPLSLYLAVNYLDRFLSSFNLPHDESWMQQ---LLSVSC 147
Query: 98 LTLAWKVRN---------QAFRFIY-FERDNNLNEDYKRHILSMELQILKGINWRLRAVT 147
L+LA K+ Q F Y FE RHI MEL ++K + WRL+AVT
Sbjct: 148 LSLATKMEETVVPLPMDLQVFDAEYVFE---------ARHIKRMELIVMKTLKWRLQAVT 198
Query: 148 AMYFKEFFVGKIPVGKG---IMRRTLNEIIIQAQGDINFTQYKPS 189
F +F+ K GK + +++ + D F ++PS
Sbjct: 199 PFSFIGYFLDKFNEGKPPSYTLASWCSDLTVGTLKDSRFLSFRPS 243
>sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2
Length = 383
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 29/164 (17%)
Query: 41 LRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIV-LAAICCLT 99
+R A+ I + +NF + YLA+NY D F+S+ +LP RD + L ++ CL+
Sbjct: 109 VRSEAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEG----RDWMTQLLSVACLS 164
Query: 100 LAWKVRNQAF-----------RFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTA 148
+A K+ RF+ FE + I MEL +L +NWR++AVT
Sbjct: 165 IAAKMEETVVPQCLDLQIGEPRFL-FEVET---------IHRMELLVLTNLNWRMQAVTP 214
Query: 149 MYFKEFFVGKIPVGKGIMRRTL---NEIIIQAQGDINFTQYKPS 189
+ ++F+ K+ G R L +E+I++ F +++PS
Sbjct: 215 FSYIDYFLRKLNSGNAAPRSWLLRSSELILRIAAGTGFLEFRPS 258
>sp|P42753|CCD31_ARATH Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3
Length = 376
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 118/253 (46%), Gaps = 23/253 (9%)
Query: 12 FEQQALEKFFNEERESMAAEGYAVSKEATL---RKVALNVILKNSKCFNFDAFIPYLAMN 68
+E + L F++E E +G + + L RK A+ IL+ + + F LA+
Sbjct: 58 WEDEDLVTLFSKEEE----QGLSCLDDVYLSTDRKEAVGWILRVNAHYGFSTLAAVLAIT 113
Query: 69 YFDLFISRNQLPNVLGRVRDD---IVLAAICCLTLAWKVR-NQAFRFIYFERDNNLNEDY 124
Y D FI L RD + L ++ CL+LA KV Q + F+ +
Sbjct: 114 YLDKFICSYSLQ------RDKPWMLQLVSVACLSLAAKVEETQVPLLLDFQVEETKYVFE 167
Query: 125 KRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNE---IIIQAQGDI 181
+ I MEL IL + W++ +T + F + + ++ + LN+ +++ D
Sbjct: 168 AKTIQRMELLILSTLEWKMHLITPISFVDHIIRRLGLKNNAHWDFLNKCHRLLLSVISDS 227
Query: 182 NFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMDK- 240
F Y PSV+AA++++ + P + + ++L ++ +E++++C ++ +D+
Sbjct: 228 RFVGYLPSVVAAATMMRIIEQVDPFDPLSYQTNLLGVLNLTKEKVKTCYDLILQLPVDRI 287
Query: 241 --QILLERNEKLK 251
QI ++ ++K K
Sbjct: 288 GLQIQIQSSKKRK 300
>sp|Q8H339|CCD12_ORYSJ Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2
Length = 354
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 49 ILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQA 108
ILK + + YLA++Y D F+S ++LP ++ L A+ CL+LA K+
Sbjct: 123 ILKVRELYGMLPVTAYLAVSYMDRFLSLHRLPGNGWAMQ----LLAVTCLSLAAKMEETL 178
Query: 109 FRFIYFERDNNLNEDYK-RHILSMELQILKGINWRLRAVTAMYFKEFFVGKI-PVGKGI- 165
I + + ++ R I MEL +L ++WRLR++T F F K+ P GK I
Sbjct: 179 VPSILDLQMEDARYIFEHRTIFRMELLVLDALDWRLRSITPFTFMYLFADKVDPNGKHIR 238
Query: 166 -MRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTA 199
+ ++ + D F + PS +AA+++L A
Sbjct: 239 ELIHQATQVTLATIHDTEFLDHCPSSIAAAAVLCA 273
>sp|Q69QB8|CCD31_ORYSJ Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYCD3-1 PE=2 SV=2
Length = 342
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 40 TLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLT 99
+R A++ I K + + F L++NY D F+S LP + L A+ L+
Sbjct: 88 AVRSDAIDWIWKVHELYKFGPLTAVLSVNYLDRFLSVFDLPQEEACMTQ---LLAVASLS 144
Query: 100 LAWKVRNQAFRFIYFERDNNLNEDYK-RHILSMELQILKGINWRLRAVTAMYFKEFFVGK 158
LA K+ + + ++ R I MEL +L + WR++AVTA F ++++ K
Sbjct: 145 LAAKMEETVVPHPLDLQVCDAKYVFETRTIKRMELAVLNALKWRMQAVTACSFIDYYLHK 204
Query: 159 I-----PVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCER 213
P + R ++I+ F ++PS +AAS L A L +E + ER
Sbjct: 205 FNDDDTPSTSALSRSV--DLILSTCKVAEFLVFRPSEIAASVALVA---LEEHETSMFER 259
Query: 214 DILATKHIKEEELESCLKRTYEMCMDKQIL 243
K++K+E + C YEM DK I+
Sbjct: 260 VATCYKNLKKERVLRC----YEMIQDKIIM 285
>sp|Q90459|CCND1_DANRE G1/S-specific cyclin-D1 OS=Danio rerio GN=ccnd1 PE=2 SV=1
Length = 291
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQ----AFRFIYFERDNNL 120
LAMNY D F+S P R++ L C+ LA K++ A + + DN++
Sbjct: 80 LAMNYLDRFLSVE--PTKKTRLQ----LLGATCMFLASKMKETVPLTAEKLCIY-TDNSV 132
Query: 121 NEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPV---GKGIMRRTLNEIIIQA 177
+L MEL L + W L +VT F E F+ K+P+ K I+R+ +
Sbjct: 133 RPG---ELLQMELLALNKLKWDLASVTPHDFIEHFLAKLPIHQSSKQILRKHAQTFVALC 189
Query: 178 QGDINFTQYKPSVMAASSLLTACRLLYPNEYNQC 211
D+NF PS++AA S+ A + LY + C
Sbjct: 190 ATDVNFIASPPSMIAAGSVAAAVQGLYLKSTDSC 223
>sp|Q67V81|CCD11_ORYSJ Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1
Length = 363
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 30/170 (17%)
Query: 45 ALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKV 104
+++ ILK F YLA++Y D F+S LP+ G L + CL+LA K+
Sbjct: 128 SVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLPD-HGWASQ---LLCVACLSLAAKM 183
Query: 105 RN-----------QAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKE 153
+ RFI+ R I MEL +L ++WRLR+VT F +
Sbjct: 184 EESSAPPLLDLQIEGTRFIF----------EPRTIQRMELIVLVELDWRLRSVTPFAFVD 233
Query: 154 FFVGKIPVGKGIMRRTLN----EIIIQAQGDINFTQYKPSVMAASSLLTA 199
FF K+ G R L +II+ A ++ F + S MAA+++L A
Sbjct: 234 FFACKVG-SSGRSSRILALRACQIILSAIHELEFLNHCASSMAAAAVLFA 282
>sp|P42752|CCD21_ARATH Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3
Length = 361
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 17/158 (10%)
Query: 40 TLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIV-LAAICCL 98
++R AL+ ILK ++F L+MNY D F++ +LP + +D L A+ CL
Sbjct: 95 SVRNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELP----KDKDWAAQLLAVSCL 150
Query: 99 TLAWKVRNQAFRFIYFERDNNLNEDYK-----RHILSMELQILKGINWRLRAVTAMYFKE 153
+LA K+ I + ED K + I MEL ++ +NWRL+A+T F +
Sbjct: 151 SLASKMEETDVPHIV----DLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFID 206
Query: 154 FFVGKIP--VGKGIMRRTLNEIIIQAQGDINFTQYKPS 189
+FV KI V + ++ R+ + I+ I F ++PS
Sbjct: 207 YFVDKISGHVSENLIYRS-SRFILNTTKAIEFLDFRPS 243
>sp|Q0WQN9|CCD42_ARATH Cyclin-D4-2 OS=Arabidopsis thaliana GN=CYCD4-2 PE=1 SV=2
Length = 298
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 19/209 (9%)
Query: 3 FDSGNPLHSFEQQALEKFFNEERESMAAEGYAV-----SKEATLRKVALNVILKNSKCFN 57
F G PL S ++ + + +ER+ + Y + +R AL I K +
Sbjct: 27 FQMGFPLES--EEIVREMIEKERQHSPRDDYLKRLRNGDLDFNVRIQALGWIWKACEELQ 84
Query: 58 FDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAF-RFIYFER 116
F LAMNY D F+S + LP+ G+ + L A+ CL+LA K+ + +
Sbjct: 85 FGPLCICLAMNYLDRFLSVHDLPS--GKAWT-VQLLAVACLSLAAKIEETNVPELMQLQV 141
Query: 117 DNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKI------PVGKGIMRRTL 170
+ + + MEL +L + WRLRAVT + +F+ KI P + + R
Sbjct: 142 GAPMFVFEAKSVQRMELLVLNVLRWRLRAVTPCSYVRYFLSKINGYDQEPHSRLVTRSL- 200
Query: 171 NEIIIQAQGDINFTQYKPSVMAASSLLTA 199
++I I+F +++ S +AA+ L+
Sbjct: 201 -QVIASTTKGIDFLEFRASEIAAAVALSV 228
>sp|Q9SN11|CCD33_ARATH Cyclin-D3-3 OS=Arabidopsis thaliana GN=CYCD3-3 PE=2 SV=1
Length = 361
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 11/202 (5%)
Query: 42 RKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLA 101
R+ AL+ I K + F++ LA+NYFD FI+ + + L A+ CL+LA
Sbjct: 86 REKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQ---LTALACLSLA 142
Query: 102 WKVRNQAFRFIY-FERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIP 160
KV F+ F+ + + I MEL +L ++WR+ VT + F + + +
Sbjct: 143 AKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRMHPVTPISFFDHIIRRYS 202
Query: 161 VGKGIMRRTLN---EIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILA 217
L+ +++ D F + PSV+A + +++ R L + + ++
Sbjct: 203 FKSHHQLEFLSRCESLLLSIIPDSRFLSFSPSVLATAIMVSVIRDLKMCDEAVYQSQLMT 262
Query: 218 TKHIKEEELESCLKRTYEMCMD 239
+ E++ C YE+ +D
Sbjct: 263 LLKVDSEKVNKC----YELVLD 280
>sp|Q2V3B2|CCD51_ARATH Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=2 SV=2
Length = 323
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 86/162 (53%), Gaps = 16/162 (9%)
Query: 42 RKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDD---IVLAAICCL 98
R +A++ IL F F Y+A++YFDLF+ + +G +D+ + L ++ CL
Sbjct: 72 RLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHK----RFIGLQKDETWAMRLLSVACL 127
Query: 99 TLAWKVRNQAFRFI-YFERDNNLNEDYKRHIL-SMELQILKGINWRLRAVTAMYFKEFFV 156
+LA K+ + + + +D++ +K ++ EL IL ++W++ +T ++ +F+
Sbjct: 128 SLAAKMEERIVPGLSQYPQDHDFV--FKPDVIRKTELLILSTLDWKMNLITPFHYFNYFL 185
Query: 157 GKI-----PVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAA 193
KI V K ++ ++ ++ +I+FT+Y+ V+AA
Sbjct: 186 AKISQDNHSVSKDLVLLRSSDSLLALTKEISFTEYRQFVVAA 227
>sp|P50755|CCND1_XENLA G1/S-specific cyclin-D1 OS=Xenopus laevis GN=ccnd1 PE=2 SV=1
Length = 291
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 87/199 (43%), Gaps = 27/199 (13%)
Query: 15 QALEKFFNEERESMAAEGY--AVSKEA--TLRKVALNVILKNSKCFNFDAFIPYLAMNYF 70
+ L+ E S + Y V KE +RK+ +L+ + + + LAMNY
Sbjct: 24 RVLQTMLKAEETSCPSMSYFKCVQKEILPNMRKIVATWMLEVCEEQKCEEEVFPLAMNYL 83
Query: 71 DLFIS----RNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQ---AFRFIYFERDNNLNED 123
D F+S R +LG C+ LA K++ + DN++ D
Sbjct: 84 DRFLSVEPLRKSWLQLLGAT----------CMFLASKMKETIPLTAEKLCIYTDNSIRPD 133
Query: 124 YKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPV---GKGIMRRTLNEIIIQAQGD 180
+L MEL++L + W L +VT F E F+ K+P+ K I+R+ + D
Sbjct: 134 ---ELLIMELRVLNKLKWDLASVTPHDFIEHFLNKMPLTEDTKQIIRKHAQTFVALCATD 190
Query: 181 INFTQYKPSVMAASSLLTA 199
+NF PS++AA S+ A
Sbjct: 191 VNFISNPPSMIAAGSVAAA 209
>sp|Q9FGQ7|CCD32_ARATH Cyclin-D3-2 OS=Arabidopsis thaliana GN=CYCD3-2 PE=2 SV=1
Length = 367
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 23/217 (10%)
Query: 31 EGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDI 90
+G+ VS RK AL+ +L+ + F + LA+NYFD F++ +L +
Sbjct: 89 DGFLVS----CRKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKLQTDKPWMSQ-- 142
Query: 91 VLAAICCLTLAWKVRNQAFRFIY---FERDNNLNEDYKRHILSMELQILKGINWRLRAVT 147
L A+ L+LA KV + E L E + I MEL IL + WR+ VT
Sbjct: 143 -LVAVASLSLAAKVEEIQVPLLLDLQVEEARYLFE--AKTIQRMELLILSTLQWRMHPVT 199
Query: 148 AMYFKEFFVGKIPVGKGIMR-----RTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRL 202
+ F + + + G + R ++I D F +Y PSV+A + ++
Sbjct: 200 PISFFDHIIRRF--GSKWHQQLDFCRKCERLLISVIADTRFMRYFPSVLATAIMILVFEE 257
Query: 203 LYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMD 239
L P + + + I + +E++ C YE+ ++
Sbjct: 258 LKPCDEVEYQSQITTLLKVNQEKVNEC----YELLLE 290
>sp|Q69S43|CCD61_ORYSJ Cyclin-D6-1 OS=Oryza sativa subsp. japonica GN=CYCD6-1 PE=2 SV=1
Length = 320
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 10/183 (5%)
Query: 62 IPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKV-RNQAFRFIYFERDNNL 120
+ YLA+NY D ++S+ QL R L AI CLTLA K+ R A +R
Sbjct: 78 VAYLALNYVDRYLSKRQL--ACERNPWAPRLLAISCLTLAAKMQRAAAISAADIQRGEEF 135
Query: 121 NEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVG------KIPVGKGIMRRTLNEII 174
D + I ME +L + WR R+VT + F FF+ + P ++ +++
Sbjct: 136 MFDEAK-IQRMEQMVLNALEWRTRSVTPLAFLGFFLSACFPQPRHPALLDAIKARAVDLL 194
Query: 175 IQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTY 234
++ Q ++ ++ PSV AA++LL A + E + A + E+L C +
Sbjct: 195 LRVQPEVKMAEFSPSVAAAAALLAAAGEVAGAHLLGFEAGVAACPFVNSEKLRECGEVMA 254
Query: 235 EMC 237
C
Sbjct: 255 AAC 257
>sp|P55169|CCND1_CHICK G1/S-specific cyclin-D1 OS=Gallus gallus GN=CCND1 PE=2 SV=1
Length = 292
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 17/152 (11%)
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQ----AFRFIYFERDNNL 120
LAMNY D F+S L + + L C+ +A K++ A + + DN++
Sbjct: 80 LAMNYLDRFLSFEPLK------KSRLQLLGATCMFVASKMKETIPLTAEKLCIY-TDNSI 132
Query: 121 NEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVG---KGIMRRTLNEIIIQA 177
D +L MEL ++ + W L A+T F E F+ K+P+ K I+R+ +
Sbjct: 133 RPD---ELLQMELLLVNKLKWNLAAMTPHDFIEHFLTKMPLAEDTKQIIRKHAQTFVALC 189
Query: 178 QGDINFTQYKPSVMAASSLLTACRLLYPNEYN 209
D+ F PS++AA S++ A + L+ N
Sbjct: 190 ATDVKFISNPPSMIAAGSVVAAVQGLHLGNTN 221
>sp|Q10K98|CCD23_ORYSJ Putative cyclin-D2-3 OS=Oryza sativa subsp. japonica GN=CYCD2-3
PE=3 SV=1
Length = 405
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 27/199 (13%)
Query: 19 KFFNEERESM--AAEGYAVSK------EATLRKVALNVILKNSKCFNFDAFIPYLAMNYF 70
F +E E M A G ++K E + R A++ I K ++F YLA+NY
Sbjct: 73 SFMEKEVEQMVETARGEYLTKLSNGGIELSCRIAAIDWICKVQAYYSFGPLCAYLAVNYL 132
Query: 71 DLFISRNQLPNVLGRVRDDI----VLAAICCLTLAWKVRNQAFRFIYFERDNNL-NEDY- 124
D F+S + V +D+ L + CL+LA K+ A D + N +Y
Sbjct: 133 DRFLSSVEFS-----VTNDMPWMQQLLIVACLSLAAKMEETAAPGTL---DLQVCNPEYV 184
Query: 125 --KRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLN---EIIIQAQG 179
I ME+ +L + WR++AVT + F+ KI G I ++ EII+
Sbjct: 185 FDAETIHRMEIIVLTTLKWRMQAVTPFTYIGHFLDKINEGNRITSELISRCTEIILSTMK 244
Query: 180 DINFTQYKPSVMAASSLLT 198
F +++PS +A + L+
Sbjct: 245 ATVFLRFRPSEIATAVALS 263
>sp|P49706|CCND2_CHICK G1/S-specific cyclin-D2 OS=Gallus gallus GN=CCND2 PE=3 SV=1
Length = 291
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQ---AFRFIYFERDNNLN 121
LAMNY D F++ V+ + + L C+ LA K++ + DN++
Sbjct: 79 LAMNYLDRFLA------VVPTRKCHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIK 132
Query: 122 EDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKG---IMRRTLNEIIIQAQ 178
+ +L EL +L + W L AVT F E + K+P+ K ++R+ I
Sbjct: 133 ---PQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPLPKDKLVLIRKHAQTFIALCA 189
Query: 179 GDINFTQYKPSVMAASSLLTA 199
D NF Y PS++A S+ A
Sbjct: 190 TDFNFAMYPPSMIATGSVGAA 210
>sp|P30280|CCND2_MOUSE G1/S-specific cyclin-D2 OS=Mus musculus GN=Ccnd2 PE=2 SV=1
Length = 289
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 18/161 (11%)
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQ----AFRFIYFERDNNL 120
LAMNY D F++ P + + L C+ LA K++ A + + DN++
Sbjct: 78 LAMNYLDRFLAGVPTP------KTHLQLLGAVCMFLASKLKETIPLTAEKLCIY-TDNSV 130
Query: 121 NEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGK---GIMRRTLNEIIIQA 177
+ +L EL +L + W L AVT F E + K+P K ++R+ I
Sbjct: 131 K---PQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQKEKLSLIRKHAQTFIALC 187
Query: 178 QGDINFTQYKPSVMAASSLLTA-CRLLYPNEYNQCERDILA 217
D F Y PS++A S+ A C L +E N D L
Sbjct: 188 ATDFKFAMYPPSMIATGSVGAAICGLQQDDEVNTLTCDALT 228
>sp|Q6YXH8|CCD41_ORYSJ Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2
Length = 356
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 86/195 (44%), Gaps = 28/195 (14%)
Query: 14 QQALEKFFNEERESMAAEGYAVSKEAT---------LRKVALNVILKNSKCFNFDAFIPY 64
++ + + E + M E YA A +R A++ I K ++F
Sbjct: 66 EECVARLVETEADHMPREDYAERLRAGGGDGDLDLRVRMDAIDWIWKVHSYYSFAPLTAC 125
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIV-LAAICCLTLAWKVRNQAFRFIYFERDNNLNED 123
LA+NY D F+S QLP+ +D + L A+ CL+LA K+ + D + E+
Sbjct: 126 LAVNYLDRFLSLYQLPD----GKDWMTQLLAVACLSLAAKMEETD---VPQSLDLQVGEE 178
Query: 124 Y----KRHILSMELQILKGINWRLRAVTAMYFKEFFV-----GKIPVGKGIMRRTLNEII 174
+ I MEL +L + WR++AVT + ++F+ G P G+ + + E+I
Sbjct: 179 RYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSS--ELI 236
Query: 175 IQAQGDINFTQYKPS 189
+ ++PS
Sbjct: 237 LCIARGTECLGFRPS 251
>sp|Q04827|CCND2_RAT G1/S-specific cyclin-D2 OS=Rattus norvegicus GN=Ccnd2 PE=2 SV=1
Length = 288
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 18/161 (11%)
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQ----AFRFIYFERDNNL 120
LAMNY D F++ P + + L C+ LA K++ A + + DN++
Sbjct: 78 LAMNYLDRFLAGVPTP------KTHLQLLGAVCMFLASKLKETIPLTAEKLCIY-TDNSV 130
Query: 121 NEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGK---GIMRRTLNEIIIQA 177
+ +L EL +L + W L AVT F E + K+P K ++R+ I
Sbjct: 131 K---PQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQKEKLSLIRKHAQTFIALC 187
Query: 178 QGDINFTQYKPSVMAASSLLTA-CRLLYPNEYNQCERDILA 217
D F Y PS++A S+ A C L E N D L
Sbjct: 188 ATDFKFAMYPPSMIATGSVGAAICGLQQDEEVNALTCDALT 228
>sp|P30279|CCND2_HUMAN G1/S-specific cyclin-D2 OS=Homo sapiens GN=CCND2 PE=1 SV=1
Length = 289
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQA---FRFIYFERDNNLN 121
LAMNY D F++ P + + L C+ LA K++ + + DN++
Sbjct: 79 LAMNYLDRFLAGVPTP------KSHLQLLGAVCMFLASKLKETSPLTAEKLCIYTDNSIK 132
Query: 122 EDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGK---GIMRRTLNEIIIQAQ 178
+ +L EL +L + W L AVT F E + K+P + ++R+ I
Sbjct: 133 ---PQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQQREKLSLIRKHAQTFIALCA 189
Query: 179 GDINFTQYKPSVMAASSLLTA 199
D F Y PS++A S+ A
Sbjct: 190 TDFKFAMYPPSMIATGSVGAA 210
>sp|Q2KI22|CCND1_BOVIN G1/S-specific cyclin-D1 OS=Bos taurus GN=CCND1 PE=2 SV=1
Length = 295
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQ----AFRFIYFERDNNL 120
LAMNY D F+S + + + L C+ +A K++ A + + DN++
Sbjct: 80 LAMNYLDRFLSLEPVK------KSRLQLLGATCMFVASKMKETIPLTAEKLCIYT-DNSI 132
Query: 121 NEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVG---KGIMRRTLNEIIIQA 177
D +L MEL ++ + W L A+T F E F+ K+PV K I+R+ +
Sbjct: 133 RPD---ELLHMELVLVNKLKWNLAAMTPHDFIEHFLSKMPVAEENKQIIRKHAQTFVALC 189
Query: 178 QGDINFTQYKPSV 190
D+ F PS+
Sbjct: 190 ATDVKFISNPPSM 202
>sp|Q9LZM0|CCD71_ARATH Putative cyclin-D7-1 OS=Arabidopsis thaliana GN=CYCD7-1 PE=3 SV=1
Length = 341
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 128 ILSMELQILKGINWRLRAVTAMYFKEFFVGKIP-VGKGIMRRTLNEIIIQAQGDINFTQY 186
+ MEL ILK + WR+ AVT+ F + V KI VG ++ + ++ D+ QY
Sbjct: 162 VAQMELIILKALEWRVNAVTSYTFSQTLVSKIGMVGDHMIMNRITNHLLDVICDLKMLQY 221
Query: 187 KPSVMAASSLLT-----ACRLLYPN--EYNQCERDILATKHIKEEELE-SCLKRTYEMCM 238
PSV+A +++ CR N E N E+ + +K +++ +R Y
Sbjct: 222 PPSVVATAAIWILMEDKVCRESIMNLFEQNHKEKIVKCVDGMKNRDIDHQSSRRRYSEGR 281
Query: 239 DKQILLERNEKLKLGPQRKVE 259
LL+R + + + VE
Sbjct: 282 SILSLLQRGDVMNMNGDYNVE 302
>sp|Q64HP0|CCND1_CANFA G1/S-specific cyclin-D1 OS=Canis familiaris GN=CCND1 PE=2 SV=1
Length = 295
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 90/199 (45%), Gaps = 34/199 (17%)
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQ----AFRFIYFERDNNL 120
LAMNY + F+S + + + L C+ +A K++ A + + DN++
Sbjct: 80 LAMNYLNRFLSLEPVK------KSRLQLLGATCMFVASKMKETIPLTAEKLCIYT-DNSI 132
Query: 121 NEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVG---KGIMRRTLNEIIIQA 177
D +L MEL ++ + W L A+T F E F+ K+PV K I+R+ +
Sbjct: 133 RPD---ELLQMELLLVNKLKWNLAAMTPHDFIEHFLSKMPVAEENKQIIRKHAQTFVALC 189
Query: 178 QGDINFTQYKPSVM---------------AASSLLTACRLL-YPNEYNQCERDIL-ATKH 220
D+ F PS++ +++S L+ RL + ++ +C+ D L A +
Sbjct: 190 ATDVKFISNPPSMVAAGSVVAAVQGLHLGSSNSFLSYHRLTRFLSKVIKCDADCLRACQE 249
Query: 221 IKEEELESCLKRTYEMCMD 239
E LES L++ + +D
Sbjct: 250 QIEALLESSLRQAQQQSLD 268
>sp|Q0P5D3|CCND2_BOVIN G1/S-specific cyclin-D2 OS=Bos taurus GN=CCND2 PE=2 SV=1
Length = 289
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQ---AFRFIYFERDNNLN 121
LA+NY D F++ P + + L C+ LA K++ + DN++
Sbjct: 79 LAINYLDRFLAGVPTP------KTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIK 132
Query: 122 EDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGK---GIMRRTLNEIIIQAQ 178
+ +L EL +L + W L AVT F E + K+P ++R+ I
Sbjct: 133 ---PQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPSEKLSLIRKHAQTFIALCA 189
Query: 179 GDINFTQYKPSVMAASSLLTA 199
D F Y PS++A S+ A
Sbjct: 190 TDFKFAMYPPSMIATGSVGAA 210
>sp|Q8WNW2|CCND2_PIG G1/S-specific cyclin-D2 OS=Sus scrofa GN=CCND2 PE=2 SV=1
Length = 288
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 15/141 (10%)
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQ---AFRFIYFERDNNLN 121
LA+NY D F++ P + + L C+ LA K++ + DN++
Sbjct: 79 LAINYLDRFLAGVPTP------KTHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIK 132
Query: 122 EDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGK---GIMRRTLNEIIIQAQ 178
+ +L EL +L + W L AVT F E + K+P ++R+ I
Sbjct: 133 ---PQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPQPNEKLSLIRKHAQTFIALCA 189
Query: 179 GDINFTQYKPSVMAASSLLTA 199
D F Y PS++A S+ A
Sbjct: 190 TDFKFAMYPPSMIATGSVGAA 210
>sp|P49707|CCNE1_CHICK G1/S-specific cyclin-E1 OS=Gallus gallus GN=CCNE1 PE=2 SV=1
Length = 407
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 23/170 (13%)
Query: 41 LRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTL 100
+R + L+ +++ + + YLA ++FD F++ Q NV V+ + L I L +
Sbjct: 141 MRTILLDWLMEVCEVYKLYRETFYLAQDFFDRFMATQQ--NV---VKTLLQLIGISSLFI 195
Query: 101 AWKVRN----QAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAM------- 149
A K+ + +F Y D ED ILSMEL I+K +NW L +T +
Sbjct: 196 AAKLEEIYPPKLHQFAYV-TDGACTED---EILSMELIIMKALNWNLNPLTVVSWLNIYM 251
Query: 150 ---YFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSL 196
Y E + +P + + E++ DI +Y V+AAS+L
Sbjct: 252 QVAYLNELYEVLLPQYPQQIFVQIAELLDLCVLDIGCLEYTYGVLAASAL 301
>sp|P47794|CCNE1_DANRE G1/S-specific cyclin-E1 OS=Danio rerio GN=ccne1 PE=2 SV=1
Length = 410
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 29/174 (16%)
Query: 41 LRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTL 100
+R + L+ +++ + + YL +YFD F++ + NVL + + L I CL +
Sbjct: 146 MRAILLDWLMEVCEVYKLHRETFYLGQDYFDRFMATQE--NVL---KTTLQLIGISCLFI 200
Query: 101 AWKVRN----QAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAM------- 149
A K+ + +F Y D ED ILSME+ I+K +NW L +T +
Sbjct: 201 AAKMEEIYPPKVHQFAYV-TDGACTED---DILSMEIIIMKELNWSLSPLTPVAWLNIYM 256
Query: 150 ---YFK---EFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLL 197
Y K E + P + L ++ I D+ ++ S++AAS+L
Sbjct: 257 QMAYLKETAEVLTAQYPQATFVQIAELLDLCIL---DVRSLEFSYSLLAASALF 307
>sp|Q9FVX0|CCA12_ARATH Cyclin-A1-2 OS=Arabidopsis thaliana GN=CYCA1-2 PE=1 SV=2
Length = 442
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 96/214 (44%), Gaps = 21/214 (9%)
Query: 36 SKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAI 95
S A++R + ++ +++ ++ + YLA+NY D +++ N + + ++ L +
Sbjct: 206 SINASMRSILIDWLVEVAEEYRLSPETLYLAVNYVDRYLTGNAIN------KQNLQLLGV 259
Query: 96 CCLTLAWKVRN----QAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYF 151
C+ +A K Q F Y + L + +L ME +L + + L TA F
Sbjct: 260 TCMMIAAKYEEVCVPQVEDFCYITDNTYL----RNELLEMESSVLNYLKFELTTPTAKCF 315
Query: 152 KEFFVGKIPVGKGIMRRTLNEIII-----QAQGDINFTQYKPSVMAASSLLTACRLLYPN 206
F+ + G+ + L+E + + D +Y PS++AAS++ A L+P+
Sbjct: 316 LRRFL-RAAQGRKEVPSLLSECLACYLTELSLLDYAMLRYAPSLVAASAVFLAQYTLHPS 374
Query: 207 EYNQCERDILATKHIKEEELESCLKRTYEMCMDK 240
+ + + +E+C+K ++C +K
Sbjct: 375 R-KPWNATLEHYTSYRAKHMEACVKNLLQLCNEK 407
>sp|Q0INT0|CCA13_ORYSJ Cyclin-A1-3 OS=Oryza sativa subsp. japonica GN=CYCA1-3 PE=2 SV=2
Length = 491
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 78/181 (43%), Gaps = 19/181 (10%)
Query: 64 YLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRN----QAFRFIYFERDNN 119
YL +NY D ++S N++ R + L + C+ +A K + Q F Y DN
Sbjct: 279 YLTVNYIDRYLSGNEI------NRQRLQLLGVACMLIAAKYKEICAPQVEEFCYIT-DNT 331
Query: 120 LNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTL----NEIII 175
++ +L ME +L + + + A TA F FV V L N +
Sbjct: 332 Y---FRDEVLEMEASVLNYLKFEMTAPTAKCFLRRFVRVAQVSDEDPALHLEFLANYVAE 388
Query: 176 QAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYE 235
+ + N Y PS++AAS++ A +L P ++ T++ K EL C+K +
Sbjct: 389 LSLLEYNLLSYPPSLVAASAIFLAKFILQPAKHPWNSTLAHYTQY-KSSELSDCVKALHR 447
Query: 236 M 236
+
Sbjct: 448 L 448
>sp|Q0JPA4|CCA12_ORYSJ Cyclin-A1-2 OS=Oryza sativa subsp. japonica GN=CYCA1-2 PE=3 SV=2
Length = 477
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 64 YLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRN----QAFRFIYFERDNN 119
YL +NY D ++S N++ R + L + C+ +A K Q F Y DN
Sbjct: 266 YLTVNYIDRYLSGNEI------NRQRLQLLGVACMLIAAKYEEICAPQVEEFCYIT-DNT 318
Query: 120 LNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTL----NEIII 175
++ +L ME +L + + + A TA F FV V L N +
Sbjct: 319 Y---FRDEVLEMEASVLNYLKFEVTAPTAKCFLRRFVRVAQVSDEDPALHLEFLANYVAE 375
Query: 176 QAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYE 235
+ + N Y PS++AAS++ A +L P ++ T++ K EL C+K +
Sbjct: 376 LSLLEYNLLSYPPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQY-KSSELSDCVKALHR 434
Query: 236 M 236
+
Sbjct: 435 L 435
>sp|Q7F830|CCA11_ORYSJ Cyclin-A1-1 OS=Oryza sativa subsp. japonica GN=CYCA1-1 PE=2 SV=1
Length = 508
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 19/181 (10%)
Query: 64 YLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRN----QAFRFIYFERDNN 119
YL +NY D ++S N++ R + L + C+ +A K Q F Y DN
Sbjct: 296 YLTVNYIDRYLSGNEI------NRQRLQLLGVACMLIAAKYEEICAPQVEEFCYIT-DNT 348
Query: 120 LNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTL----NEIII 175
++ +L ME +L + + + A TA F FV V L N +
Sbjct: 349 Y---FRDEVLEMEASVLNYLKFEVTAPTAKCFLRRFVRVAQVSDEDPALHLEFLANYVAE 405
Query: 176 QAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYE 235
+ + N Y PS++AAS++ A +L P ++ T++ K EL C+K +
Sbjct: 406 LSLLEYNLLSYPPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQY-KSSELSDCVKALHR 464
Query: 236 M 236
+
Sbjct: 465 L 465
>sp|Q0DQA9|CCD51_ORYSJ Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYCD5-1 PE=2 SV=2
Length = 367
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 39 ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLF-----ISRNQLPNVLGRVRDDIVLA 93
A R+ + IL+ CF F YLA+ YFD F I R+ +P L
Sbjct: 106 ALARRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWA-------ARLL 158
Query: 94 AICCLTLAWKVRNQAFRFIYFERDNNLNEDYKRH---ILSMELQILKGINWRLRAVT 147
A+ C++LA K+ + R ++ Y+ I MEL +L ++WR+ AVT
Sbjct: 159 AVACVSLAAKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVT 215
>sp|P39949|CCNE1_RAT G1/S-specific cyclin-E1 OS=Rattus norvegicus GN=Ccne1 PE=2 SV=2
Length = 411
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 82/173 (47%), Gaps = 23/173 (13%)
Query: 38 EATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICC 97
+A +R V L+ +++ + + YLA ++FD +++ Q N++ + + L I
Sbjct: 142 QARMRAVLLDWLMEVCEVYKLHRETFYLAQDFFDRYMASQQ--NIIKTL---LQLIGISA 196
Query: 98 LTLAWKVRN----QAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKE 153
L +A K+ + +F Y D + D IL+MEL ++K + WRL +T + +
Sbjct: 197 LFIASKLEEIYPPKLHQFAYVT-DGACSGD---EILTMELMMMKALKWRLSPLTIVSWLN 252
Query: 154 FFVGKIPV---GKGIMRRTLNEIIIQAQG-------DINFTQYKPSVMAASSL 196
+V V G+ +M + ++ +Q D+ ++ V+AAS+L
Sbjct: 253 VYVQVAYVNDTGEVLMPQYPQQVFVQIAELLDLCVLDVGCLEFPYGVLAASAL 305
>sp|P39948|CCND1_RAT G1/S-specific cyclin-D1 OS=Rattus norvegicus GN=Ccnd1 PE=2 SV=1
Length = 295
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 20/159 (12%)
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQ----AFRFIYFERDNNL 120
LAMNY D F+S L + + L C+ +A K++ A + + DN++
Sbjct: 80 LAMNYLDRFLSLEPLK------KSRLQLLGATCMFVASKMKETIPLTAEKLCIYT-DNSI 132
Query: 121 NEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVG---KGIMRRTLNEIIIQA 177
+ MEL ++ + W L A+T F E F+ K+P K I+R+ +
Sbjct: 133 RPEELL---QMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEADENKQIIRKHAQTFVALC 189
Query: 178 QGDINFTQYKPSVMAASSLLTACR---LLYPNEYNQCER 213
D+ F PS++AA S++ A + L PN + C R
Sbjct: 190 ATDVKFISNPPSMVAAGSVVAAMQGLNLGSPNNFLSCYR 228
>sp|Q52QT8|CCNG1_PIG Cyclin-G1 OS=Sus scrofa GN=CCNG1 PE=2 SV=1
Length = 295
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 30/182 (16%)
Query: 29 AAEGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQL-PNVLGRVR 87
+A + A LR + +L ++ F FD LA+N D F+S+ ++ P LG V
Sbjct: 39 SAHDNGLRMTARLRDFEVKDLLSLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCV- 97
Query: 88 DDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKR---------HILSMELQILKG 138
+ C LA K + ER+ L D R ++ ME +L+
Sbjct: 98 ------GLSCFYLAVKSLEE-------ERNVPLATDLIRISQYRFTVSDLMRMEKIVLEK 144
Query: 139 INWRLRAVTAMYFKEFFVGKIPVGKGIMRR-TLNEIIIQAQ-----GDINFTQYKPSVMA 192
+ W+++A TA F + + + RR +LN ++AQ I F++ KPSV+A
Sbjct: 145 VCWKVKATTAFQFLQLYYSLLQESLPYERRNSLNFERLEAQLKACYCRIIFSKAKPSVLA 204
Query: 193 AS 194
S
Sbjct: 205 LS 206
>sp|P51959|CCNG1_HUMAN Cyclin-G1 OS=Homo sapiens GN=CCNG1 PE=1 SV=2
Length = 295
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 81/182 (44%), Gaps = 30/182 (16%)
Query: 29 AAEGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQL-PNVLGRVR 87
+A + A LR + +L ++ F FD LA+N D F+S+ ++ P LG V
Sbjct: 39 SAHDNGLRMTARLRDFEVKDLLSLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCV- 97
Query: 88 DDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKR---------HILSMELQILKG 138
+ C LA K I ER+ L D R ++ ME +L+
Sbjct: 98 ------GLSCFYLAVKS-------IEEERNVPLATDLIRISQYRFTVSDLMRMEKIVLEK 144
Query: 139 INWRLRAVTAMYFKEFFVGKIPVGKGIMRR-TLNEIIIQAQ-----GDINFTQYKPSVMA 192
+ W+++A TA F + + + + RR ++N ++AQ I F++ KPSV+A
Sbjct: 145 VCWKVKATTAFQFLQLYYSLLQENLPLERRNSINFERLEAQLKACHCRIIFSKAKPSVLA 204
Query: 193 AS 194
S
Sbjct: 205 LS 206
>sp|Q10QA2|CCD53_ORYSJ Cyclin-D5-3 OS=Oryza sativa subsp. japonica GN=CYCD5-3 PE=2 SV=1
Length = 345
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 42 RKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDD---IVLAAICCL 98
R + I+K + F F Y+A+ Y D F++R + RD + L ++ CL
Sbjct: 100 RAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVD------RDKEWALQLLSVACL 153
Query: 99 TLAWKV-RNQAFRFIYFERDNNLNEDYK-RHILSMELQILKGINWRLRAVTAMYFKEFFV 156
+LA KV + R F+ D Y ++ MEL +L + W++ T + F
Sbjct: 154 SLAAKVEERRPPRLPEFKLDM-----YDCASLMRMELLVLTTLKWQMITETPFSYLNCFT 208
Query: 157 GKIPVG--KGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTA 199
K K I+ R + E I + I+ Y+PS +A +++L A
Sbjct: 209 AKFRHDERKAIVLRAI-ECIFASIKVISSVGYQPSTIALAAILIA 252
>sp|P25322|CCND1_MOUSE G1/S-specific cyclin-D1 OS=Mus musculus GN=Ccnd1 PE=1 SV=1
Length = 295
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 20/159 (12%)
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQ----AFRFIYFERDNNL 120
LAMNY D F+S L + + L C+ +A K++ A + + DN++
Sbjct: 80 LAMNYLDRFLSLEPLK------KSRLQLLGATCMFVASKMKETIPLTAEKLCIYT-DNSI 132
Query: 121 NEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVG---KGIMRRTLNEIIIQA 177
+ MEL ++ + W L A+T F E F+ K+P K +R+ +
Sbjct: 133 RPEELL---QMELLLVNKLKWNLAAMTPHDFIEHFLSKMPEADENKQTIRKHAQTFVALC 189
Query: 178 QGDINFTQYKPSVMAASSLLTACR---LLYPNEYNQCER 213
D+ F PS++AA S++ A + L PN + C R
Sbjct: 190 ATDVKFISNPPSMVAAGSVVAAMQGLNLGSPNNFLSCYR 228
>sp|Q39071|CCA21_ARATH Cyclin-A2-1 OS=Arabidopsis thaliana GN=CYCA2-1 PE=2 SV=3
Length = 443
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 28/173 (16%)
Query: 40 TLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLT 99
T+R + ++ +++ S+ + + YL +N D F+S N + + + L I C+
Sbjct: 211 TMRGILIDWLVEVSEEYKLVSDTLYLTVNLIDRFMSHNYIE------KQKLQLLGITCML 264
Query: 100 LAWKV------RNQAFRFIYFERDNNLNEDYKR-HILSMELQILKGINWRLRAVTAMYFK 152
+A K R + F FI DN Y R +LSME+++L +++RL T F
Sbjct: 265 IASKYEEISAPRLEEFCFIT---DNT----YTRLEVLSMEIKVLNSLHFRLSVPTTKTFL 317
Query: 153 EFFV------GKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTA 199
F+ K+P+ + M N + F ++ PS++AAS++ A
Sbjct: 318 RRFIRAAQASDKVPLIE--MEYLANYFAELTLTEYTFLRFLPSLIAASAVFLA 368
>sp|Q61457|CCNE1_MOUSE G1/S-specific cyclin-E1 OS=Mus musculus GN=Ccne1 PE=1 SV=2
Length = 408
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/169 (20%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 38 EATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICC 97
+A +R V L+ +++ + + YLA ++FD +++ N++ + I ++A+
Sbjct: 139 QARMRAVLLDWLMEVCEVYKLHRETFYLAQDFFDRYMASQH--NIIKTLLQLIGISALFI 196
Query: 98 LTLAWKVRNQAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVG 157
+ ++ + D + D IL+MEL ++K + WRL +T + + +V
Sbjct: 197 ASKLEEIYPPKLHQFAYVTDGACSGD---EILTMELMMMKALKWRLSPLTIVSWLNVYVQ 253
Query: 158 KIPV---GKGIMRRTLNEIIIQAQG-------DINFTQYKPSVMAASSL 196
V G+ +M + ++ +Q D+ ++ V+AAS+L
Sbjct: 254 VAYVNDTGEVLMPQYPQQVFVQIAELLDLCVLDVGCLEFPYGVLAASAL 302
>sp|Q5R5D0|CCNG1_PONAB Cyclin-G1 OS=Pongo abelii GN=CCNG1 PE=2 SV=1
Length = 295
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 30/182 (16%)
Query: 29 AAEGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQL-PNVLGRVR 87
+A + A LR + +L ++ F FD LA+N D F+S+ ++ P LG V
Sbjct: 39 SAHDNGLRMTARLRDFEVKDLLSLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCV- 97
Query: 88 DDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKR---------HILSMELQILKG 138
+ C LA K I ER+ L D R ++ ME +L+
Sbjct: 98 ------GLSCFYLAVKS-------IEEERNVPLATDLIRISQYRFTVSDLMRMEKIVLEK 144
Query: 139 INWRLRAVTAMYFKEFFVGKIPVGKGIMRR-TLNEIIIQAQ-----GDINFTQYKPSVMA 192
+ W+++A TA F + + + + RR +N ++AQ I F++ KPSV+A
Sbjct: 145 VCWKVKATTAFQFLQLYYSLLQENLPLERRNNINFERLEAQLKACHCRIIFSKAKPSVLA 204
Query: 193 AS 194
S
Sbjct: 205 LS 206
>sp|Q5E9I1|CCNG1_BOVIN Cyclin-G1 OS=Bos taurus GN=CCNG1 PE=2 SV=1
Length = 295
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 30/182 (16%)
Query: 29 AAEGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQL-PNVLGRVR 87
+A + A LR + +L ++ F FD LA+N D F+S+ ++ P LG V
Sbjct: 39 SAHDNGLRMTARLRDFEVKDLLSLTQFFGFDTETFSLAVNLLDRFLSKMKVQPKHLGCV- 97
Query: 88 DDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKR---------HILSMELQILKG 138
+ C LA K + ER+ L D R ++ ME +L+
Sbjct: 98 ------GLSCFYLAVKSTEE-------ERNVPLATDLIRISQYRFTVSDLMRMEKIVLEK 144
Query: 139 INWRLRAVTAMYFKEFFVGKIPVGKGIMRR-TLNEIIIQAQ-----GDINFTQYKPSVMA 192
+ W+++A TA F + + + R+ +LN ++AQ I F++ KPSV+A
Sbjct: 145 VCWKVKATTAFQFLQLYYSLLQENVPHERKSSLNFERLEAQLKACYCRIIFSKAKPSVLA 204
Query: 193 AS 194
S
Sbjct: 205 LS 206
>sp|P51945|CCNG1_MOUSE Cyclin-G1 OS=Mus musculus GN=Ccng1 PE=2 SV=2
Length = 294
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 29 AAEGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQL-PNVLGRVR 87
+A + A LR + +L ++ F FD LA+N D F+S+ ++ LG V
Sbjct: 38 SAHDNGLRMTARLRDFEVKDLLSLTQFFGFDTETFSLAVNLLDRFLSKMKVQAKHLGCV- 96
Query: 88 DDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKR---------HILSMELQILKG 138
+ C LA K + ER+ L D R ++ ME +L+
Sbjct: 97 ------GLSCFYLAVKATEE-------ERNVPLATDLIRISQYRFTVSDLMRMEKIVLEK 143
Query: 139 INWRLRAVTAMYFKEFFVGKIPVGKGIMRRT-LNEIIIQAQ-----GDINFTQYKPSVMA 192
+ W+++A TA F + + + RR LN ++AQ I F++ KPSV+A
Sbjct: 144 VCWKVKATTAFQFLQLYYSLVHDTLPFERRNDLNFERLEAQLKACHCRIIFSKAKPSVLA 203
Query: 193 ASSL 196
S L
Sbjct: 204 LSIL 207
>sp|P53782|CCND2_XENLA G1/S-specific cyclin-D2 OS=Xenopus laevis GN=ccnd2 PE=2 SV=1
Length = 291
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
Query: 65 LAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQ---AFRFIYFERDNNLN 121
+AMNY D F++ V+ + + L C+ LA K++ + DN++
Sbjct: 79 MAMNYLDRFLA------VIPTRKCHLQLLGAVCMFLASKLKETIPLTAEKLCIYTDNSIK 132
Query: 122 EDYKRHILSMELQILKGINWRLRAVTAMYFKEFFV---GKIPVGKGIMRRTLNEIIIQAQ 178
+ +L EL +L + W L AVT F E + ++R+ I
Sbjct: 133 ---PQELLEWELVVLGKLKWNLAAVTPHDFIEHILRKLPLPKDKLLLIRKHAQTFIALCA 189
Query: 179 GDINFTQYKPSVMAASSLLTA 199
D NF Y PS++A S+ A
Sbjct: 190 TDFNFAMYPPSMIATGSVGAA 210
>sp|Q9C6Y3|CCA11_ARATH Cyclin-A1-1 OS=Arabidopsis thaliana GN=CYCA1-1 PE=1 SV=1
Length = 460
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 86/210 (40%), Gaps = 25/210 (11%)
Query: 39 ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCL 98
+++R + ++ +++ S+ + YL +NY D ++S N + R + L + C+
Sbjct: 225 SSMRGILVDWLIEVSEEYRLVPETLYLTVNYIDRYLSGNVIS------RQKLQLLGVACM 278
Query: 99 TLAWKVRN----QAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEF 154
+A K Q F Y + L K +L ME +L + + + A T F
Sbjct: 279 MIAAKYEEICAPQVEEFCYITDNTYL----KDEVLDMESDVLNYLKFEMTAPTTKCFLRR 334
Query: 155 FVGKIPVGKGIMRRTLNEIIIQAQ--GDINFTQY-----KPSVMAASSLLTACRLLYPNE 207
FV G+ L ++ A +++ +Y PS++AAS++ A +L P
Sbjct: 335 FVR---AAHGVHEAPLMQLECMANYIAELSLLEYTMLSHSPSLVAASAIFLAKYILDPTR 391
Query: 208 YNQCERDILATKHIKEEELESCLKRTYEMC 237
+ K EL C+K +C
Sbjct: 392 -RPWNSTLQHYTQYKAMELRGCVKDLQRLC 420
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,959,471
Number of Sequences: 539616
Number of extensions: 5832541
Number of successful extensions: 13656
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 13573
Number of HSP's gapped (non-prelim): 113
length of query: 370
length of database: 191,569,459
effective HSP length: 119
effective length of query: 251
effective length of database: 127,355,155
effective search space: 31966143905
effective search space used: 31966143905
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)