Query 036944
Match_columns 370
No_of_seqs 252 out of 1540
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 11:27:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f2c_A Cyclin homolog, V-cycli 100.0 2.5E-44 8.5E-49 339.9 24.1 227 4-238 11-247 (254)
2 3g33_B CCND3 protein; Ser/Thr 100.0 3.6E-44 1.2E-48 347.9 25.4 226 7-239 32-267 (306)
3 1g3n_C V-cyclin; cyclin-depend 100.0 4.1E-44 1.4E-48 339.0 22.0 230 2-239 8-248 (257)
4 2cch_B Cyclin A2, cyclin-A; co 100.0 1E-43 3.5E-48 336.8 24.7 224 7-240 1-229 (260)
5 2w96_A G1/S-specific cyclin-D1 100.0 2.7E-42 9.1E-47 328.9 23.9 228 4-239 16-257 (271)
6 1f5q_B Gamma herpesvirus cycli 100.0 1.1E-42 3.6E-47 329.0 20.6 215 13-239 21-242 (252)
7 2b9r_A Human cyclin B1; cell c 100.0 1.7E-42 5.7E-47 330.2 20.0 218 11-239 5-225 (269)
8 1w98_B Cyclin E, G1/S-specific 100.0 1E-39 3.5E-44 313.3 24.2 211 11-238 16-241 (283)
9 3rgf_B Cyclin-C; protein kinas 100.0 1.1E-35 3.8E-40 285.5 20.6 212 39-263 40-275 (285)
10 2i53_A Cyclin K; cell cycle, t 100.0 6.8E-35 2.3E-39 275.1 18.6 194 39-240 38-252 (258)
11 2ivx_A Cyclin-T2; transcriptio 100.0 4.6E-34 1.6E-38 269.6 19.2 195 39-241 28-242 (257)
12 2pk2_A Cyclin-T1, protein TAT; 100.0 6.3E-34 2.1E-38 281.5 14.1 201 39-247 35-255 (358)
13 1zp2_A RNA polymerase II holoe 100.0 3.9E-33 1.3E-37 260.2 16.0 189 41-241 27-222 (235)
14 1jkw_A Cyclin H; cell cycle, c 100.0 2.4E-31 8.1E-36 259.7 21.7 194 39-240 54-262 (323)
15 1c9b_A General transcription f 99.9 6.8E-26 2.3E-30 207.1 21.5 184 41-237 4-187 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 2.4E-21 8.1E-26 175.9 21.9 185 40-237 7-193 (200)
17 3k7a_M Transcription initiatio 99.7 3.4E-18 1.2E-22 168.1 6.2 183 42-237 126-320 (345)
18 4bbr_M Transcription initiatio 99.3 1.3E-12 4.5E-17 128.3 8.6 181 43-236 127-319 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.0 4.6E-05 1.6E-09 72.6 11.3 107 45-159 77-185 (293)
20 1ais_B TFB TFIIB, protein (tra 96.3 0.014 4.7E-07 51.9 9.0 88 47-143 110-197 (200)
21 1c9b_A General transcription f 95.5 0.1 3.5E-06 46.5 11.0 86 148-237 8-93 (207)
22 4bbr_M Transcription initiatio 93.4 0.45 1.5E-05 46.1 10.7 90 145-238 126-215 (345)
23 1zp2_A RNA polymerase II holoe 91.2 1.6 5.6E-05 39.3 11.0 85 149-237 32-125 (235)
24 3k7a_M Transcription initiatio 90.5 0.27 9.2E-06 47.6 5.2 88 147-238 128-215 (345)
25 3h4c_A Transcription factor TF 87.9 10 0.00034 34.2 12.9 150 44-201 14-169 (260)
26 2i53_A Cyclin K; cell cycle, t 84.3 3.6 0.00012 37.3 8.7 86 47-140 153-250 (258)
27 2b9r_A Human cyclin B1; cell c 84.0 9.6 0.00033 35.0 11.5 86 150-238 43-130 (269)
28 1jkw_A Cyclin H; cell cycle, c 83.3 10 0.00036 35.9 11.7 83 151-236 63-153 (323)
29 1g3n_C V-cyclin; cyclin-depend 81.1 11 0.00037 34.3 10.6 85 151-238 57-143 (257)
30 3rgf_B Cyclin-C; protein kinas 80.3 13 0.00045 34.4 11.1 84 150-236 48-147 (285)
31 2w96_A G1/S-specific cyclin-D1 80.1 15 0.0005 33.7 11.2 69 168-238 79-149 (271)
32 2cch_B Cyclin A2, cyclin-A; co 79.3 11 0.00036 34.4 9.9 85 151-238 45-131 (260)
33 2f2c_A Cyclin homolog, V-cycli 79.0 14 0.00046 33.6 10.5 86 150-238 57-144 (254)
34 2ivx_A Cyclin-T2; transcriptio 78.0 24 0.00081 31.8 11.9 57 148-205 34-90 (257)
35 3g33_B CCND3 protein; Ser/Thr 72.9 18 0.00062 33.9 9.8 85 151-238 77-163 (306)
36 1w98_B Cyclin E, G1/S-specific 69.8 31 0.001 31.8 10.5 71 166-238 70-143 (283)
37 2pk2_A Cyclin-T1, protein TAT; 67.5 12 0.00041 36.1 7.4 57 148-205 41-97 (358)
38 2pmi_B PHO85 cyclin PHO80, ami 57.7 1.1E+02 0.0038 28.7 11.8 90 147-238 76-167 (293)
39 1f5q_B Gamma herpesvirus cycli 56.6 69 0.0024 29.0 10.1 70 168-239 71-142 (252)
40 3m03_A ORC6, origin recognitio 45.7 54 0.0018 25.6 6.3 51 185-238 42-92 (95)
41 3o0g_D Cyclin-dependent kinase 38.8 46 0.0016 27.7 5.1 103 43-155 28-142 (149)
42 1unl_D Cyclin-dependent kinase 37.0 47 0.0016 29.0 5.1 66 87-157 120-189 (208)
43 3m03_A ORC6, origin recognitio 36.2 1.5E+02 0.0052 23.0 9.7 83 49-136 6-88 (95)
No 1
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=2.5e-44 Score=339.92 Aligned_cols=227 Identities=13% Similarity=0.131 Sum_probs=198.1
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHhhcCCCCcccCCc----HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCcc
Q 036944 4 DSGNPLHSFEQQALEKFFNEERESMAAEGYAVSKE----ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQL 79 (370)
Q Consensus 4 d~~~pl~~~~~dil~~Ll~~E~~~~p~~~y~~~~q----~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v 79 (370)
|..||.-..++||+. |+++|.++.|+.+|+...| +.||.++|+||++|+.+|+++++|+|+||+|+|||+++..+
T Consensus 11 ~~~dp~l~~~~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v 89 (254)
T 2f2c_A 11 AKIDSTTMKDPRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQG 89 (254)
T ss_dssp CCCCHHHHTCHHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCC
T ss_pred CCCCcccccHHHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCc
Confidence 455776655689999 9999999999999986333 99999999999999999999999999999999999999998
Q ss_pred CCcccCccccchhhHHHHHHHHHHhhccCCc-hhHHhhcCCCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhh
Q 036944 80 PNVLGRVRDDIVLAAICCLTLAWKVRNQAFR-FIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGK 158 (370)
Q Consensus 80 ~~~~~~~~~~lqLiavtCL~IAsKvEE~~~p-l~~l~~~~~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~ 158 (370)
. +.++||+|+||||||||+||..+| +.+|.......|+ +++|++||+.||++|+|+++.|||++|+..|+..
T Consensus 90 ~------~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~-~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~ 162 (254)
T 2f2c_A 90 T------KKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFT-NLELINQEKDILEALKWDTEAVLATDFLIPLCNA 162 (254)
T ss_dssp C------TTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CC-HHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHH
T ss_pred C------HHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCC-HHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHH
Confidence 8 888999999999999999998775 7888643334599 9999999999999999999999999999999999
Q ss_pred CCCCh---HHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCC--CCcchHHHHhhcCCCHHHHHHHHHHH
Q 036944 159 IPVGK---GIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNE--YNQCERDILATKHIKEEELESCLKRT 233 (370)
Q Consensus 159 l~~~~---~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~--~~~~~~~l~~~~~~~~e~L~~C~~~m 233 (370)
++... ..++..|++++++++.++.|++|+||.||||||++|+...+... |..|.+.+..++|++.++|.+|++.|
T Consensus 163 ~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i 242 (254)
T 2f2c_A 163 LKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQV 242 (254)
T ss_dssp TTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 86543 23567899999999999999999999999999999999853322 22237888999999999999999999
Q ss_pred HHHHh
Q 036944 234 YEMCM 238 (370)
Q Consensus 234 ~~l~~ 238 (370)
.+++.
T Consensus 243 ~~~~~ 247 (254)
T 2f2c_A 243 SEAFS 247 (254)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
No 2
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-44 Score=347.93 Aligned_cols=226 Identities=19% Similarity=0.272 Sum_probs=196.9
Q ss_pred CCCcCcHHHHHHHHHHHHHhhcCCCCcccCCc----HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCc
Q 036944 7 NPLHSFEQQALEKFFNEERESMAAEGYAVSKE----ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNV 82 (370)
Q Consensus 7 ~pl~~~~~dil~~Ll~~E~~~~p~~~y~~~~q----~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~ 82 (370)
||--.+++||+++|+++|.++.|+.+|+...| +.||.++|+||++|+.+|+++++|+++||+|||||+++..+.
T Consensus 32 dp~l~~~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~v~-- 109 (306)
T 3g33_B 32 DPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVPTR-- 109 (306)
T ss_dssp -----CHHHHHHHHHHHGGGGSCSSCCTTTSTTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCCCC--
T ss_pred CCcccchHHHHHHHHHHHHHhCCCcHHHhhcCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCCCc--
Confidence 56555789999999999999999999998544 899999999999999999999999999999999999999988
Q ss_pred ccCccccchhhHHHHHHHHHHhhccCCc-hhHHhhcCCCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhCCC
Q 036944 83 LGRVRDDIVLAAICCLTLAWKVRNQAFR-FIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPV 161 (370)
Q Consensus 83 ~~~~~~~lqLiavtCL~IAsKvEE~~~p-l~~l~~~~~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l~~ 161 (370)
+.++||+|+||||||+|+||..+| +.+|.......|+ +++|++||+.||++|+|++++|||++|+..|+..++.
T Consensus 110 ----~~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~-~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~~ 184 (306)
T 3g33_B 110 ----KAQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVS-PRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSL 184 (306)
T ss_dssp ----GGGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSC-HHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSSC
T ss_pred ----HHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCcc-HHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCC
Confidence 888999999999999999999874 6777543334599 9999999999999999999999999999999998843
Q ss_pred C---hHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCC-C-CcchHHHHhhcCCCHHHHHHHHHHHHHH
Q 036944 162 G---KGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNE-Y-NQCERDILATKHIKEEELESCLKRTYEM 236 (370)
Q Consensus 162 ~---~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~-~-~~~~~~l~~~~~~~~e~L~~C~~~m~~l 236 (370)
. ...+...|++++++++.++.|+.|+||+||+|||++|+..++... + ..|.+.+..++|++.++|.+|++.|.++
T Consensus 185 ~~~~~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~~l 264 (306)
T 3g33_B 185 PRDRQALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIEAA 264 (306)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 234778899999999999999999999999999999999887542 1 2356777889999999999999999999
Q ss_pred Hhc
Q 036944 237 CMD 239 (370)
Q Consensus 237 ~~~ 239 (370)
+..
T Consensus 265 ~~~ 267 (306)
T 3g33_B 265 LRE 267 (306)
T ss_dssp HHT
T ss_pred HHH
Confidence 874
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=4.1e-44 Score=338.99 Aligned_cols=230 Identities=14% Similarity=0.157 Sum_probs=197.0
Q ss_pred CCCCCCCCcCcHHHHHHHHHHHHHhhcCCCCccc-CCc---HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCC
Q 036944 2 DFDSGNPLHSFEQQALEKFFNEERESMAAEGYAV-SKE---ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRN 77 (370)
Q Consensus 2 ~~d~~~pl~~~~~dil~~Ll~~E~~~~p~~~y~~-~~q---~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~ 77 (370)
|-+.+||.-..++||+ +|+++|.++.|..+|+. .+. +.||.++|+||++|+.+|+++++|+++||+|+|||+++.
T Consensus 8 ~~~~~dp~~~~~~~i~-~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~ 86 (257)
T 1g3n_C 8 PSGLLDPTLCEDRIFY-NILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIK 86 (257)
T ss_dssp --------CHHHHHHH-HHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCCCccccHHHHH-HHHHHHHHhCCChhHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHccC
Confidence 3456788877789999 99999999999999985 332 999999999999999999999999999999999999999
Q ss_pred ccCCcccCccccchhhHHHHHHHHHHhhccCCc-hhHHhhcCCCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHH
Q 036944 78 QLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFR-FIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFV 156 (370)
Q Consensus 78 ~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~p-l~~l~~~~~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl 156 (370)
.+. +.++|++|+||||||||+||..+| +.+|.......|+ +++|++||+.||++|+|++++|||++|+..|+
T Consensus 87 ~v~------~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~-~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~ 159 (257)
T 1g3n_C 87 QVS------KEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFS-RQELIDQEKELLEKLAWRTEAVLATDVTSFLL 159 (257)
T ss_dssp CCC------HHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSC-HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHH
T ss_pred CCC------HHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHH
Confidence 988 889999999999999999999764 7888533223499 99999999999999999999999999999999
Q ss_pred hhCCCC---hHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCC---CCCcchHHHHhhcCCCHHHHHHHH
Q 036944 157 GKIPVG---KGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPN---EYNQCERDILATKHIKEEELESCL 230 (370)
Q Consensus 157 ~~l~~~---~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~---~~~~~~~~l~~~~~~~~e~L~~C~ 230 (370)
..++.. ...+...|++++++++.++.|++|+||.||+|||++|+..++.. ....|.+.+..++|++.++|.+|+
T Consensus 160 ~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c~ 239 (257)
T 1g3n_C 160 LKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAAV 239 (257)
T ss_dssp HHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHHH
T ss_pred HHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHHH
Confidence 887543 23457789999999999999999999999999999999988742 124589999999999999999999
Q ss_pred HHHHHHHhc
Q 036944 231 KRTYEMCMD 239 (370)
Q Consensus 231 ~~m~~l~~~ 239 (370)
+.|.+++..
T Consensus 240 ~~i~~l~~~ 248 (257)
T 1g3n_C 240 EQILTSVSD 248 (257)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999754
No 4
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=1e-43 Score=336.76 Aligned_cols=224 Identities=17% Similarity=0.210 Sum_probs=203.0
Q ss_pred CCCcCcHHHHHHHHHHHHHhhcCCCCcccCCc---HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcc
Q 036944 7 NPLHSFEQQALEKFFNEERESMAAEGYAVSKE---ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVL 83 (370)
Q Consensus 7 ~pl~~~~~dil~~Ll~~E~~~~p~~~y~~~~q---~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~ 83 (370)
|...++.+||+.+|++.|.++.|..+|+..++ +.||.++++||++|+..|+++++|+++|++|+|||+++..+.
T Consensus 1 ~~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~--- 77 (260)
T 2cch_B 1 NEVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVL--- 77 (260)
T ss_dssp CCCCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCC---
T ss_pred CchHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCC---
Confidence 34567889999999999999999999998765 999999999999999999999999999999999999999988
Q ss_pred cCccccchhhHHHHHHHHHHhhccCC-chhHHhhcCCCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhCCCC
Q 036944 84 GRVRDDIVLAAICCLTLAWKVRNQAF-RFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVG 162 (370)
Q Consensus 84 ~~~~~~lqLiavtCL~IAsKvEE~~~-pl~~l~~~~~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l~~~ 162 (370)
+.++|++|+||||||||+||..+ .+.+|..-....|+ +++|++||+.||++|+|++++|||++|+..|+..++..
T Consensus 78 ---~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~-~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~ 153 (260)
T 2cch_B 78 ---RGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYT-KKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPA 153 (260)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSC-HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSC
T ss_pred ---HHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcC-HHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCC
Confidence 88899999999999999999976 57888533223489 99999999999999999999999999999999998755
Q ss_pred hHHHHHHHHHHHHHhccccc-ccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcCCCHHHHHHHHHHHHHHHhcc
Q 036944 163 KGIMRRTLNEIIIQAQGDIN-FTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMDK 240 (370)
Q Consensus 163 ~~~l~~~a~~ll~~sl~d~~-~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e~L~~C~~~m~~l~~~~ 240 (370)
...+...|++++++++.++. |+.|+||.||+|||++|...++. ..|.+.+..++|++.++|.+|++.|.+++...
T Consensus 154 ~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~---~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~ 229 (260)
T 2cch_B 154 NCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG---QSWPESLIRKTGYTLESLKPCLMDLHQTYLKA 229 (260)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS---CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC---CcchHHHHHHhCcCHHHHHHHHHHHHHHHHhc
Confidence 44688999999999999999 99999999999999999998875 34788999999999999999999999996543
No 5
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=2.7e-42 Score=328.93 Aligned_cols=228 Identities=20% Similarity=0.295 Sum_probs=193.5
Q ss_pred CCCCCCcCcHHHHHHHHHHHHHhhcCCCCcccCCc----HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCcc
Q 036944 4 DSGNPLHSFEQQALEKFFNEERESMAAEGYAVSKE----ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQL 79 (370)
Q Consensus 4 d~~~pl~~~~~dil~~Ll~~E~~~~p~~~y~~~~q----~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v 79 (370)
+..||--. ++|++.+|+++|.++.|+.+|+...| +.+|.++++||++|+.+|+++++|+++|++|+|||+++.++
T Consensus 16 ~~~dp~~~-~~~i~~~l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v 94 (271)
T 2w96_A 16 AYPDANLL-NDRVLRAMLKAEETCAPSVSYFKCVQKEVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEPV 94 (271)
T ss_dssp ----------CHHHHHHHHHHHHTCCCTTHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCccc-HHHHHHHHHHHHHHhCCCchHHHhcCCcCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCCc
Confidence 34456444 67999999999999999999986443 99999999999999999999999999999999999999998
Q ss_pred CCcccCccccchhhHHHHHHHHHHhhccCC-chhHHhhcCCCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhh
Q 036944 80 PNVLGRVRDDIVLAAICCLTLAWKVRNQAF-RFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGK 158 (370)
Q Consensus 80 ~~~~~~~~~~lqLiavtCL~IAsKvEE~~~-pl~~l~~~~~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~ 158 (370)
. +.++|++|+||||||||+||..+ .+.++.......|+ +++|++||+.||++|+|++++|||++|+..|+..
T Consensus 95 ~------~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~-~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~ 167 (271)
T 2w96_A 95 K------KSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIR-PEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSK 167 (271)
T ss_dssp C------TTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSC-HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHT
T ss_pred C------HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCC-HHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHH
Confidence 8 88899999999999999999966 57777543333589 9999999999999999999999999999999999
Q ss_pred CCCChH---HHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCC--CC---C-CcchHHHHhhcCCCHHHHHHH
Q 036944 159 IPVGKG---IMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYP--NE---Y-NQCERDILATKHIKEEELESC 229 (370)
Q Consensus 159 l~~~~~---~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~--~~---~-~~~~~~l~~~~~~~~e~L~~C 229 (370)
++...+ .+...|++++++++.|+.|+.|+||.||+|||++|+..++. .. | ..|.+.+..++|++.++|++|
T Consensus 168 l~~~~~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~c 247 (271)
T 2w96_A 168 MPEAEENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRAC 247 (271)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHHH
Confidence 865432 24578999999999999999999999999999999987753 11 1 235667888999999999999
Q ss_pred HHHHHHHHhc
Q 036944 230 LKRTYEMCMD 239 (370)
Q Consensus 230 ~~~m~~l~~~ 239 (370)
++.|.+++..
T Consensus 248 ~~~i~~l~~~ 257 (271)
T 2w96_A 248 QEQIEALLES 257 (271)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999999764
No 6
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1.1e-42 Score=329.02 Aligned_cols=215 Identities=14% Similarity=0.123 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCcccCCc---HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCcccc
Q 036944 13 EQQALEKFFNEERESMAAEGYAVSKE---ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDD 89 (370)
Q Consensus 13 ~~dil~~Ll~~E~~~~p~~~y~~~~q---~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~~ 89 (370)
.+|++.+|+++|.++.| . ..+. +.||.++||||++|+.+|+++++|+|+||+|+||||++..+. +.+
T Consensus 21 ~d~i~~~l~~~E~~~~p-~---~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~v~------~~~ 90 (252)
T 1f5q_B 21 RQMIYRSEREHDARMVG-V---NVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTRID------REN 90 (252)
T ss_dssp HHHHHHHHHHHHHHHSS-S---SHHHHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSCCC------GGG
T ss_pred HHHHHHHHHHHHHHhCc-C---ccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCCcC------HHH
Confidence 46999999999999988 1 1111 789999999999999999999999999999999999999988 889
Q ss_pred chhhHHHHHHHHHHhhccCCc-hhHHhhcCCCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhCCCChH---H
Q 036944 90 IVLAAICCLTLAWKVRNQAFR-FIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKG---I 165 (370)
Q Consensus 90 lqLiavtCL~IAsKvEE~~~p-l~~l~~~~~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l~~~~~---~ 165 (370)
+||+|+||||||||+||..+| +.+|.....+.|+ +++|++||+.||++|+|+++.|||++|+..|++.++...+ .
T Consensus 91 lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt-~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~~~~~~~~~~~ 169 (252)
T 1f5q_B 91 YQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATT-ADKLLTLEVKSLDTLSWVADRCLSTDLICYILHIMHAPREDYLN 169 (252)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCC-HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCC-HHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHHcCCCcchHHH
Confidence 999999999999999999875 6777432223499 9999999999999999999999999999999999865432 4
Q ss_pred HHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q 036944 166 MRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMD 239 (370)
Q Consensus 166 l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e~L~~C~~~m~~l~~~ 239 (370)
+...|.++++.++.|+.|+.|+||+||+||+.++.....+ ....|...+..++|++.++|.+|++.|.+++..
T Consensus 170 ~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~~-~~~~~~~~L~~~t~~~~~~l~~C~~~i~~~l~~ 242 (252)
T 1f5q_B 170 IYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYD-YYENRIDGVCKSLYITKEELHQCCDLVDIAIVS 242 (252)
T ss_dssp HHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCCC-chhhHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999997665532110 112245667889999999999999999998643
No 7
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=1.7e-42 Score=330.23 Aligned_cols=218 Identities=16% Similarity=0.193 Sum_probs=197.9
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCcccCCc--HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccc
Q 036944 11 SFEQQALEKFFNEERESMAAEGYAVSKE--ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRD 88 (370)
Q Consensus 11 ~~~~dil~~Ll~~E~~~~p~~~y~~~~q--~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~ 88 (370)
++.+||+.+|++.|.++.|+++|+..+. +.+|.++++||.+|+..|+++++|+++|++|+|||+++..+. +.
T Consensus 5 eY~~di~~~l~~~E~~~~~~~~y~~~q~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~------~~ 78 (269)
T 2b9r_A 5 EYVKDIYAYLRQLEAAQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVP------KK 78 (269)
T ss_dssp --CCTTTTTHHHHHHTTCCCTTTTSSSSSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCC------GG
T ss_pred HHHHHHHHHHHHHHHhhCCCcccccCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCc------HH
Confidence 3457999999999999999999997655 999999999999999999999999999999999999999998 88
Q ss_pred cchhhHHHHHHHHHHhhccCCc-hhHHhhcCCCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhCCCChHHHH
Q 036944 89 DIVLAAICCLTLAWKVRNQAFR-FIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMR 167 (370)
Q Consensus 89 ~lqLiavtCL~IAsKvEE~~~p-l~~l~~~~~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l~~~~~~l~ 167 (370)
++|++|+||||||||+||..+| +.+|.......|+ +++|++||+.||++|+|+++.|||++|+..|+...+.+. .+.
T Consensus 79 ~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~-~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~~-~~~ 156 (269)
T 2b9r_A 79 MLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYT-KHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDV-EQH 156 (269)
T ss_dssp GHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSC-HHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCCH-HHH
T ss_pred HhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCC-HHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCCH-HHH
Confidence 9999999999999999999765 7888643333489 999999999999999999999999999999998876543 678
Q ss_pred HHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q 036944 168 RTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMD 239 (370)
Q Consensus 168 ~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e~L~~C~~~m~~l~~~ 239 (370)
..|++++++++.++.|+.|+||.||+|||++|+..++.. .|.+.+..++|++.++|.+|++.|.+++..
T Consensus 157 ~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~---~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~ 225 (269)
T 2b9r_A 157 TLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG---EWTPTLQHYLSYTEESLLPVMQHLAKNVVM 225 (269)
T ss_dssp HHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC---CSCTTHHHHSCCCSSTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC---CCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999998864 478889999999999999999999998654
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1e-39 Score=313.26 Aligned_cols=211 Identities=17% Similarity=0.294 Sum_probs=185.8
Q ss_pred CcHHHHHHHHHHHHHhhcCCCCcccCCc---HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcC-CccCCcccCc
Q 036944 11 SFEQQALEKFFNEERESMAAEGYAVSKE---ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISR-NQLPNVLGRV 86 (370)
Q Consensus 11 ~~~~dil~~Ll~~E~~~~p~~~y~~~~q---~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~-~~v~~~~~~~ 86 (370)
.+.+|++++|+++|.++.|..+|+..+. +.+|.++++||++|+.+|+++++|+++|++|+|||+++ ..+.
T Consensus 16 ~y~~~i~~~l~~~E~~~~~~~~y~~~q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~~v~------ 89 (283)
T 1w98_B 16 ANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENVV------ 89 (283)
T ss_dssp SCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCCC------
T ss_pred cCHHHHHHHHHHHHHHhCCCchhhccCCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCCCCC------
Confidence 4578999999999999999999998764 89999999999999999999999999999999999997 5777
Q ss_pred cccchhhHHHHHHHHHHhhccCCc-hhHHhhcCCCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhCCCC---
Q 036944 87 RDDIVLAAICCLTLAWKVRNQAFR-FIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVG--- 162 (370)
Q Consensus 87 ~~~lqLiavtCL~IAsKvEE~~~p-l~~l~~~~~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l~~~--- 162 (370)
+.++|++|+||||||||+||..+| +.+|..-....|+ +++|++||+.||++|+|++++|||++|+..|+..++..
T Consensus 90 ~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~-~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~~~~~~~ 168 (283)
T 1w98_B 90 KTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACS-GDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVAYLNDLH 168 (283)
T ss_dssp GGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSC-HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCC-HHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHhccCchh
Confidence 788999999999999999999775 6888543323489 99999999999999999999999999999999865321
Q ss_pred -------hHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcCCCHHHHHHHHHHHHH
Q 036944 163 -------KGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYE 235 (370)
Q Consensus 163 -------~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e~L~~C~~~m~~ 235 (370)
.......+.+++++++.|+.|++|+||.||||||++|. |.+.+..++|+++++|.+|++.|..
T Consensus 169 ~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~----------~~~~l~~~tg~~~~~i~~c~~~l~~ 238 (283)
T 1w98_B 169 EVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS----------SSELMQKVSGYQWCDIENCVKWMVP 238 (283)
T ss_dssp CSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS----------CHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH----------ChHHHHHHhCCCHHHHHHHHHHHHH
Confidence 11233457789999999999999999999999999884 4678899999999999999999998
Q ss_pred HHh
Q 036944 236 MCM 238 (370)
Q Consensus 236 l~~ 238 (370)
++.
T Consensus 239 ~~~ 241 (283)
T 1w98_B 239 FAM 241 (283)
T ss_dssp HHH
T ss_pred HHH
Confidence 854
No 9
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=285.51 Aligned_cols=212 Identities=20% Similarity=0.177 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccccchhhHHHHHHHHHHhhccCCc-hhHHhh-
Q 036944 39 ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFR-FIYFER- 116 (370)
Q Consensus 39 ~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~p-l~~l~~- 116 (370)
..+|..+++||.+|+..|+++++|+++|++|||||++++++. +.++|++|+||||||||+||..+| +.++..
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~------~~~~~lva~acLfLA~K~EE~~~~~~~di~~~ 113 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLK------SIDPVLMAPTCVFLASKVEEFGVVSNTRLIAA 113 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTT------TSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCch------hcCHHHHHHHHHHHHHhhhccccccHHHHHHH
Confidence 789999999999999999999999999999999999999998 788999999999999999999875 556531
Q ss_pred -------------cCCCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhCCCChHHHHHHHHHHHHHhcccccc
Q 036944 117 -------------DNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINF 183 (370)
Q Consensus 117 -------------~~~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~ 183 (370)
+..+.|+ +++|++||+.||++|+|+++++||++|+..|+..++.. ..+.+.|++++++++.++.|
T Consensus 114 ~~~~~k~~~~~~~~~~~~~~-~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~-~~~~~~A~~~l~~sl~t~~~ 191 (285)
T 3rgf_B 114 ATSVLKTRFSYAFPKEFPYR-MNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE-DMLLPLAWRIVNDTYRTDLC 191 (285)
T ss_dssp HHHHHHHHCTTTCCSCCCCC-HHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH-HHHHHHHHHHHHHHTTSSHH
T ss_pred HHHHHcccccccCchhhHHH-HHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHccChh
Confidence 2345678 99999999999999999999999999999999998754 47889999999999999999
Q ss_pred cCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcCCCHHHHHHHHHHHHHHHhc-cCCch--------hhhhhhccCC
Q 036944 184 TQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMD-KQILL--------ERNEKLKLGP 254 (370)
Q Consensus 184 l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e~L~~C~~~m~~l~~~-~~~~~--------~~~~k~~~~p 254 (370)
+.|+||.||+|||++|...++.. ...|+..+|++.++|.+|++.|.+++.. +.+.. .+..|++..|
T Consensus 192 l~~~Ps~IAaAaiylA~~~~~~~-----~~~W~~~~~~~~~~l~~~~~~il~ly~~~~~~~~~~~~~~~~~k~~~~~~~~ 266 (285)
T 3rgf_B 192 LLYPPFMIALACLHVACVVQQKD-----ARQWFAELSVDMEKILEIIRVILKLYEQWKNFDERKEMATILSKMPKPKPPP 266 (285)
T ss_dssp HHSCHHHHHHHHHHHHHHHTTCC-----CHHHHHTSCSCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHSCCCCCCC
T ss_pred hccCHHHHHHHHHHHHHHHcCCC-----hhhHHHHHCCCHHHHHHHHHHHHHHHHhcccCchhhhHHHHHHhCCCCCCCC
Confidence 99999999999999999988753 2567778999999999999999999653 33332 2234555666
Q ss_pred CCccccccc
Q 036944 255 QRKVEAGET 263 (370)
Q Consensus 255 ~s~~~~~~~ 263 (370)
+.|...+.+
T Consensus 267 ~~~~~~~~~ 275 (285)
T 3rgf_B 267 NSEGEQGPN 275 (285)
T ss_dssp ---------
T ss_pred CCCCCCCCC
Confidence 666555554
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=6.8e-35 Score=275.14 Aligned_cols=194 Identities=15% Similarity=0.208 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccccchhhHHHHHHHHHHhhccCCchhHHhh--
Q 036944 39 ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFER-- 116 (370)
Q Consensus 39 ~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~pl~~l~~-- 116 (370)
..+|..+++||.+|+..|+++++|+++|++|||||++++++. +.++|++|+||||||||+||..+++.++..
T Consensus 38 ~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~------~~~~qlv~~acL~lA~K~eE~~~~l~d~~~~~ 111 (258)
T 2i53_A 38 ARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFK------QFPRYVTGACCLFLAGKVEETPKKCKDIIKTA 111 (258)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTT------TSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChh------hcCHHHHHHHHHHHHHccccccccHHHHHHHH
Confidence 899999999999999999999999999999999999999988 788999999999999999997667777642
Q ss_pred -----cCCC----CCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhCCCChH---HHHHHHHHHHHHhccccccc
Q 036944 117 -----DNNL----NEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKG---IMRRTLNEIIIQAQGDINFT 184 (370)
Q Consensus 117 -----~~~~----~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l~~~~~---~l~~~a~~ll~~sl~d~~~l 184 (370)
++.| ..+ +++|++||+.||++|+|+++++||++|+..|+..++.... .+...|++++++++.++.++
T Consensus 112 ~~~~~~~~~~~~~~~~-~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l 190 (258)
T 2i53_A 112 RSLLNDVQFGQFGDDP-KEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSL 190 (258)
T ss_dssp HHHSCHHHHGGGCSCH-HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGG
T ss_pred HHHhchhhhhhhhhhH-HHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchh
Confidence 1111 125 7999999999999999999999999999999998866542 58899999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCcch-----HHHHhh--cCCCHHHHHHHHHHHHHHHhcc
Q 036944 185 QYKPSVMAASSLLTACRLLYPNEYNQCE-----RDILAT--KHIKEEELESCLKRTYEMCMDK 240 (370)
Q Consensus 185 ~y~PS~IAaAaI~lA~~~l~~~~~~~~~-----~~l~~~--~~~~~e~L~~C~~~m~~l~~~~ 240 (370)
.|+||.||+|||++|...++.. .+.|. ..|+.. .|++.++|.+|++.|.+++...
T Consensus 191 ~~~Ps~IAaAai~lA~~~~~~~-~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~~~ 252 (258)
T 2i53_A 191 QWEPEIIAVAVMYLAGRLCKFE-IQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQG 252 (258)
T ss_dssp TSCHHHHHHHHHHHHHHHHTCC-GGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTSSS
T ss_pred ccChHHHHHHHHHHHHHHhCCC-CCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988753 22232 234443 4999999999999999998643
No 11
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=4.6e-34 Score=269.62 Aligned_cols=195 Identities=15% Similarity=0.132 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccccchhhHHHHHHHHHHhhccCCchhHHhh--
Q 036944 39 ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFER-- 116 (370)
Q Consensus 39 ~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~pl~~l~~-- 116 (370)
..+|..+++||.+|+..|+++++|+++|++|||||++++++. +.++|++|+||||||||+||..+++.++..
T Consensus 28 ~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~------~~~~qlv~~acL~lA~K~EE~p~~l~d~~~~~ 101 (257)
T 2ivx_A 28 LSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFT------KFNKNIISSTALFLAAKVEEQARKLEHVIKVA 101 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTT------TSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChh------hhCHHHHHHHHHHHHhccccCCcCHHHHHHHH
Confidence 789999999999999999999999999999999999999988 888999999999999999999556777631
Q ss_pred --------------cCCCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhCCCChHHHHHHHHHHHHHhcc-cc
Q 036944 117 --------------DNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQG-DI 181 (370)
Q Consensus 117 --------------~~~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~-d~ 181 (370)
++.|.+. +++|++||+.||++|+|+++++||++|+..|+..++... .+.+.|++++++++. +.
T Consensus 102 ~~~~~~~~~~~~~~~~~y~~~-~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~-~~~~~A~~~~~~sl~~~~ 179 (257)
T 2ivx_A 102 HACLHPLEPLLDTKCDAYLQQ-TRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRASK-DLAQTSYFMATNSLHLTT 179 (257)
T ss_dssp HHHHCTTSCCCCTTSHHHHHH-HHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHCC
T ss_pred HHHhccCCCCCCcchHHHHHH-HHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCCc-HHHHHHHHHHHhhhhccc
Confidence 1223335 899999999999999999999999999999999987654 688899999999985 56
Q ss_pred cccCcchHHHHHHHHHHHHHHhCCCCCC-cchHHHHh--hcCCCHHHHHHHHHHHHHHHhccC
Q 036944 182 NFTQYKPSVMAASSLLTACRLLYPNEYN-QCERDILA--TKHIKEEELESCLKRTYEMCMDKQ 241 (370)
Q Consensus 182 ~~l~y~PS~IAaAaI~lA~~~l~~~~~~-~~~~~l~~--~~~~~~e~L~~C~~~m~~l~~~~~ 241 (370)
.|+.|+||.||+|||++|...++..... .....|+. ..+++.++|.+|++.|.+++....
T Consensus 180 ~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~~~l~~~~~~i~~~~~~~~ 242 (257)
T 2ivx_A 180 FCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTLELLDELTHEFLQILEKTP 242 (257)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCHHHHHHHHHHHHHHHHTSH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCHHHHHHHHHHHHHHHHhCh
Confidence 6999999999999999999988753110 00122333 247999999999999999986543
No 12
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=6.3e-34 Score=281.51 Aligned_cols=201 Identities=16% Similarity=0.107 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccccchhhHHHHHHHHHHhhccCCchhHHhh--
Q 036944 39 ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFER-- 116 (370)
Q Consensus 39 ~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~pl~~l~~-- 116 (370)
..+|..+++||.+|+..|+|+++|+++|++|||||++++++. +.++|++|+||||||||+||..+++.+|..
T Consensus 35 ~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~------~~~~qlva~acLfLA~K~EE~p~~l~d~v~v~ 108 (358)
T 2pk2_A 35 LSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFT------RFPGNSVAPAALFLAAKVEEQPKKLEHVIKVA 108 (358)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTT------TSCHHHHHHHHHHHHHHHTTCCCCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc------cccHHHHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 789999999999999999999999999999999999999988 888999999999999999999667777641
Q ss_pred --------------cCCCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhCCCChHHHHHHHHHHHHHhcc-cc
Q 036944 117 --------------DNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQG-DI 181 (370)
Q Consensus 117 --------------~~~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~-d~ 181 (370)
++.|.+. +++|++||+.||++|+|+|.++||++||..|+..+.... .+.+.|++++++++. +.
T Consensus 109 ~~~~~~~~~~~~~~~~~y~~~-~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~~-~l~~~A~~ll~~sl~~t~ 186 (358)
T 2pk2_A 109 HTCLHPQESLPDTRSEAYLQQ-VQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRASK-DLAQTSYFMATNSLHLTT 186 (358)
T ss_dssp HHHHCSSSCCCCTTSHHHHGG-GTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTTSC
T ss_pred HHHhccccccccccchhhhHH-HHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCc
Confidence 1223345 789999999999999999999999999999999987654 688899999999995 55
Q ss_pred cccCcchHHHHHHHHHHHHHHhCCCCC-CcchHHHHhh--cCCCHHHHHHHHHHHHHHHhccCCchhhh
Q 036944 182 NFTQYKPSVMAASSLLTACRLLYPNEY-NQCERDILAT--KHIKEEELESCLKRTYEMCMDKQILLERN 247 (370)
Q Consensus 182 ~~l~y~PS~IAaAaI~lA~~~l~~~~~-~~~~~~l~~~--~~~~~e~L~~C~~~m~~l~~~~~~~~~~~ 247 (370)
.|+.|+||.||+|||++|...++.... ......|+.. .+++.++|.+|++.|.+++......+++.
T Consensus 187 l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~~~l~~i~~~il~~y~~~~~~L~~i 255 (358)
T 2pk2_A 187 FSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTLELLDELTHEFLQILEKTPNRLKRI 255 (358)
T ss_dssp GGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred chhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCHHHHHHHHHHHHHHHHhCcccccch
Confidence 589999999999999999998874311 0001223333 47899999999999999987655555443
No 13
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-33 Score=260.25 Aligned_cols=189 Identities=11% Similarity=0.061 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCcc-ccchhhHHHHHHHHHHhhccCCchhHHhh--c
Q 036944 41 LRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVR-DDIVLAAICCLTLAWKVRNQAFRFIYFER--D 117 (370)
Q Consensus 41 ~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~-~~lqLiavtCL~IAsKvEE~~~pl~~l~~--~ 117 (370)
.|..+++||.+|+..|+++++|+++|++|||||++++++. + .++|++|+||||||||+||..+++.++.. .
T Consensus 27 ~R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~------~~~~~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~ 100 (235)
T 1zp2_A 27 DTIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEE------KGFSLEALVATCIYLSCKVEECPVHIRTICNEAN 100 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSC------CCCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccc------cccCHHHHHHHHHHHHhccccCcccHHHHHHHHH
Confidence 3999999999999999999999999999999999999988 7 78999999999999999997777887742 1
Q ss_pred ----CCCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHH
Q 036944 118 ----NNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAA 193 (370)
Q Consensus 118 ----~~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAa 193 (370)
+.+.++ +++|++||+.||++|+|++.++||+.|+..|+..++... .+...|++++++++.++.++.|+||.||+
T Consensus 101 ~~~~~~~~~~-~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~~-~~~~~A~~~l~~s~~~~~~l~~~Ps~IAa 178 (235)
T 1zp2_A 101 DLWSLKVKLS-RSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIINQ-KQLEFAWSIVNDSYASSLCLMAHPHQLAY 178 (235)
T ss_dssp TTCCCSSCCC-HHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSCH-HHHHHHHHHHHHHTTTTGGGTSCHHHHHH
T ss_pred HHccchhhcc-HHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHcCCchhccCHHHHHH
Confidence 124588 999999999999999999999999999999999876544 67889999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHhhcCCCHHHHHHHHHHHHHHHhccC
Q 036944 194 SSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMDKQ 241 (370)
Q Consensus 194 AaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e~L~~C~~~m~~l~~~~~ 241 (370)
|||++|...++.. .+.|...+ .|++.++|.+|++.|.+++...+
T Consensus 179 Aai~lA~~~~~~~-~~~~~~~~---~~~~~~~i~~~~~~i~~ly~~~~ 222 (235)
T 1zp2_A 179 AALLISCCNDENT-IPKLLDLI---KSTDAFKVILCVQRIISIYYFED 222 (235)
T ss_dssp HHHHHHHTSCTTH-HHHHHHHC---CHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhcCCC-CCCCcchh---hcCCHHHHHHHHHHHHHHHhhCC
Confidence 9999999876532 11122222 28999999999999999986543
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=99.98 E-value=2.4e-31 Score=259.71 Aligned_cols=194 Identities=18% Similarity=0.179 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHHHhHHhcC--CCchHHHHHHHHHHHHhcCCccCCcccCccccchhhHHHHHHHHHHhhccCCchhHHhh
Q 036944 39 ATLRKVALNVILKNSKCFN--FDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFER 116 (370)
Q Consensus 39 ~~~R~~lvdWl~~V~~~~~--l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~pl~~l~~ 116 (370)
..+|...++||.+||..|+ ++++|+++|++|||||++.+++. +.++|+||+||||||||+||..+++.+|..
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~------~~~~~lva~acLfLA~K~EE~~~~l~d~v~ 127 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVM------EYHPRIIMLTCAFLACKVDEFNVSSPQFVG 127 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTT------TSCHHHHHHHHHHHHHHHTTCCCCHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChh------hcCHHHHHHHHHHHHHhhhcCCCCHHHHHH
Confidence 8899999999999999999 99999999999999999999998 788999999999999999999888888753
Q ss_pred cC--C---CCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhCC------CChHHHHHHHHHHHHHhcccccccC
Q 036944 117 DN--N---LNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIP------VGKGIMRRTLNEIIIQAQGDINFTQ 185 (370)
Q Consensus 117 ~~--~---~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l~------~~~~~l~~~a~~ll~~sl~d~~~l~ 185 (370)
.. . ..|+ +++|++||+.||++|+|++.++||++|+..|+..+. .....+...|++++++++.++.++.
T Consensus 128 ~~~~~p~~~~~~-~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~~~l~~~A~~~l~~sl~t~~~l~ 206 (323)
T 1jkw_A 128 NLRESPLGQEKA-LEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENPEILRKTADDFLNRIALTDAYLL 206 (323)
T ss_dssp GSSSCHHHHHHH-HHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHTTSTHHHH
T ss_pred HhccChhhhHHH-HHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccHHHc
Confidence 21 1 1366 899999999999999999999999999999986541 2335688999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCcchHHHHhh--cCCCHHHHHHHHHHHHHHHhcc
Q 036944 186 YKPSVMAASSLLTACRLLYPNEYNQCERDILAT--KHIKEEELESCLKRTYEMCMDK 240 (370)
Q Consensus 186 y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~--~~~~~e~L~~C~~~m~~l~~~~ 240 (370)
|+||+||+|||++|...++.. .+.|...+..+ .+++.++|.+|++.|..++...
T Consensus 207 ~~Ps~IAaAai~lA~~~~~~~-~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~~ 262 (323)
T 1jkw_A 207 YTPSQIALTAILSSASRAGIT-MESYLSESLMLKENRTCLSQLLDIMKSMRNLVKKY 262 (323)
T ss_dssp SCHHHHHHHHHHHHHHHHSCC-CTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHcCCC-hHHHHHHHhccccccccHHHHHHHHHHHHHHHHcc
Confidence 999999999999999988763 34587776554 6789999999999999998654
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.94 E-value=6.8e-26 Score=207.10 Aligned_cols=184 Identities=16% Similarity=0.105 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccccchhhHHHHHHHHHHhhccCCchhHHhhcCCC
Q 036944 41 LRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNL 120 (370)
Q Consensus 41 ~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~pl~~l~~~~~~ 120 (370)
......++|.+++..+++++.|+.+|++||+||+..+.+. ..+.+++|+||||||||+||...++.++.....
T Consensus 4 ~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~------~~~~~~v~aaclylAcK~ee~p~~l~di~~~~~- 76 (207)
T 1c9b_A 4 AMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLK------GRANDAIASACLYIACRQEGVPRTFKEICAVSR- 76 (207)
T ss_dssp GHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCST------TSCHHHHHHHHHHHHHHHTTCCCCHHHHHHTSS-
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcC------CCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHC-
Confidence 4567889999999999999999999999999999999887 777999999999999999999667888865433
Q ss_pred CCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHH
Q 036944 121 NEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTAC 200 (370)
Q Consensus 121 ~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~ 200 (370)
++ .++|.++|+.||+.|+|++.+++|+.|+..|...++... .+...|+++++.++.+..++.|+|+.||+|||++|.
T Consensus 77 -~~-~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~-~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA~ 153 (207)
T 1c9b_A 77 -IS-KKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK-QVQMAATHIARKAVELDLVPGRSPISVAAAAIYMAS 153 (207)
T ss_dssp -SC-HHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHH
T ss_pred -CC-HHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHHH
Confidence 78 999999999999999999999999999999999987654 688899999999999989999999999999999999
Q ss_pred HHhCCCCCCcchHHHHhhcCCCHHHHHHHHHHHHHHH
Q 036944 201 RLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMC 237 (370)
Q Consensus 201 ~~l~~~~~~~~~~~l~~~~~~~~e~L~~C~~~m~~l~ 237 (370)
+..+.. .+.+.+..++|++..+|.+|++.|.+..
T Consensus 154 ~~~~~~---~~~~~i~~~~~v~~~tI~~~~~~l~~~l 187 (207)
T 1c9b_A 154 QASAEK---RTQKEIGDIAGVADVTIRQSYRLIYPRA 187 (207)
T ss_dssp HTSSSC---CCHHHHHHHHTCCHHHHHHHHHHHGGGH
T ss_pred HHHCCC---CCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 987643 3578899999999999999999887753
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.88 E-value=2.4e-21 Score=175.89 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccccchhhHHHHHHHHHHhhccCCchhHHhhcCC
Q 036944 40 TLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNN 119 (370)
Q Consensus 40 ~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~pl~~l~~~~~ 119 (370)
+......++|.+++..+++++.+...|..|++||+..+.+. ....+.+|++|+|+|||.||....+.++..-..
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~------gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~ 80 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIR------GRSIESVMAACVYAACRLLKVPRTLDEIADIAR 80 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTT------TCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcC------CCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHC
Confidence 34568899999999999999999999999999999998877 667999999999999999997667888864433
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCcccc--cChHHHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHH
Q 036944 120 LNEDYKRHILSMELQILKGINWRLRA--VTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLL 197 (370)
Q Consensus 120 ~~yt~~~~Il~mE~~IL~~L~w~L~~--pTp~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~ 197 (370)
++ ..+|.++++.|++.|+|++.. ++|..|+..|...++-.. .+...|+++++.+..+..+..++|+.||+||||
T Consensus 81 --v~-~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~-~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly 156 (200)
T 1ais_B 81 --VD-KKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE-KVRRRAIEILDEAYKRGLTSGKSPAGLVAAALY 156 (200)
T ss_dssp --SC-HHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH-HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHH
T ss_pred --CC-HHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHH
Confidence 67 999999999999999999999 999999999999987654 688999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCcchHHHHhhcCCCHHHHHHHHHHHHHHH
Q 036944 198 TACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMC 237 (370)
Q Consensus 198 lA~~~l~~~~~~~~~~~l~~~~~~~~e~L~~C~~~m~~l~ 237 (370)
+|++..+.. .+.+.+..++|+++..|.+|++.|.+.+
T Consensus 157 ~A~~~~~~~---~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 157 IASLLEGEK---RTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp HHHHHTTCC---CCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCC---CCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 999987753 3688999999999999999999998865
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.4e-18 Score=168.08 Aligned_cols=183 Identities=10% Similarity=0.039 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccccchhhHHHHHHHHHHhhccCCchhHHhhcCCCC
Q 036944 42 RKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLN 121 (370)
Q Consensus 42 R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~pl~~l~~~~~~~ 121 (370)
.......|..++..++|+..+.-.|..||.|++..+.+. ....+.++++|||||+|.|+....+.++..-..
T Consensus 126 l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~k------gr~~~~vaaAclyiAcR~e~~prtl~ei~~~~~-- 197 (345)
T 3k7a_M 126 VQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLK------GKSMESIMAASILIGCRRAEVARTFKEIQSLIH-- 197 (345)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSC------CCCSHHHHTTTTTTTSBTTBSSCCHHHHHHSSS--
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc------CCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC--
Confidence 356778899999999999999999999999999998887 667999999999999999998667888865433
Q ss_pred CCcHHHHHHHHHHHHHHcC------------CcccccChHHHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchH
Q 036944 122 EDYKRHILSMELQILKGIN------------WRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPS 189 (370)
Q Consensus 122 yt~~~~Il~mE~~IL~~L~------------w~L~~pTp~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS 189 (370)
++ +++|.++++.|++.|+ +++.+++|..|+..|...++.. ..+...|+++++.+..+..+..++|+
T Consensus 198 v~-~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~-~~v~~~A~~i~~~~~~~~l~~Gr~P~ 275 (345)
T 3k7a_M 198 VK-TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLP-MQVTTSAEYTAKKCKEIKEIAGKSPI 275 (345)
T ss_dssp CC-SHHHHHHHHHHHHHHTCC-----------------------------------------------------------
T ss_pred CC-HHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhchhcCCCHH
Confidence 77 9999999999999999 9999999999999999998654 36788999999999999889999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCcchHHHHhhcCCCHHHHHHHHHHHHHHH
Q 036944 190 VMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMC 237 (370)
Q Consensus 190 ~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e~L~~C~~~m~~l~ 237 (370)
.||+||||+|...++.. .+.+.+...+|++...|+.+++.|.+..
T Consensus 276 ~IAaAaIylAa~~~~~~---~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 276 TIAVVSIYLNILLFQIP---ITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHCCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999987643 2578889999999999999999888764
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.34 E-value=1.3e-12 Score=128.26 Aligned_cols=181 Identities=10% Similarity=0.056 Sum_probs=74.8
Q ss_pred HHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccccchhhHHHHHHHHHHhhccCCchhHHhhcCCCCC
Q 036944 43 KVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNE 122 (370)
Q Consensus 43 ~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~pl~~l~~~~~~~y 122 (370)
......|.+++..++|+..+.-.|..+|.+++....+. ......++++|+|+|+|.++....+.++..-.. .
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~r------Grs~e~vaAAclYiACR~~~~prtl~eI~~~~~--v 198 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLK------GKSMESIMAASILIGCRRAEVARTFKEIQSLIH--V 198 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTT------TCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHT--C
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc------CCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhC--C
Confidence 44566778999999999999999999999999988776 556889999999999999987778887753222 4
Q ss_pred CcHHHHHHHHHHHHHHcCCc------------ccccChHHHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHH
Q 036944 123 DYKRHILSMELQILKGINWR------------LRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSV 190 (370)
Q Consensus 123 t~~~~Il~mE~~IL~~L~w~------------L~~pTp~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~ 190 (370)
+ +.+|-+..+.|.+.|+.. +...+|..|+..|...++-.. .+...|+.++..+..+......+|+.
T Consensus 199 ~-~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~-~v~~~A~~i~~~~~~~~i~~GR~P~~ 276 (345)
T 4bbr_M 199 K-TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-QVTTSAEYTAKKCKEIKEIAGKSPIT 276 (345)
T ss_dssp C-TTHHHHHHHHHHHCC---------------------------------------------------------------
T ss_pred C-HHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHhcccccCCChHH
Confidence 5 899999999999999974 677899999999999886543 57788999999998877778999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcchHHHHhhcCCCHHHHHHHHHHHHHH
Q 036944 191 MAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEM 236 (370)
Q Consensus 191 IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e~L~~C~~~m~~l 236 (370)
||+||||+|....+... -.+.+...+|++...|+..++.|.+.
T Consensus 277 IAAAaIylAa~l~g~~~---t~~eIa~v~~Vse~TIr~rykel~~~ 319 (345)
T 4bbr_M 277 IAVVSIYLNILLFQIPI---TAAKVGQTLQVTEGTIKSGYKILYEH 319 (345)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999998776432 25668888999999999888888765
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=97.96 E-value=4.6e-05 Score=72.57 Aligned_cols=107 Identities=13% Similarity=0.128 Sum_probs=81.4
Q ss_pred HHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCc-cCCcccCccccchhhHHHHHHHHHHhhccCC-chhHHhhcCCCCC
Q 036944 45 ALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQ-LPNVLGRVRDDIVLAAICCLTLAWKVRNQAF-RFIYFERDNNLNE 122 (370)
Q Consensus 45 lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~-v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~-pl~~l~~~~~~~y 122 (370)
+-+|+..+..+-+++.+++-.|+.|+||+..+.. +. .. ....+-+-++||.+|+|+-+-.. ....+..-++ +
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~-l~---~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgG--i 150 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFT-LN---SLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGG--V 150 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCC-CS---TTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHT--S
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCc-cC---CchHHHHHHHHHHHHHHhccccccChhHhhhccC--c
Confidence 5568888888889999999999999999987532 21 11 34577788999999999988764 4444433333 7
Q ss_pred CcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhC
Q 036944 123 DYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKI 159 (370)
Q Consensus 123 t~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l 159 (370)
+ .+++-.||+..|..|+|+|.+. +..|...++...
T Consensus 151 s-l~ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~ 185 (293)
T 2pmi_B 151 R-CHELNILENDFLKRVNYRIIPR-DHNITLCSIEQK 185 (293)
T ss_dssp C-HHHHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSC
T ss_pred C-HHHHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHh
Confidence 8 9999999999999999999765 555666665554
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.34 E-value=0.014 Score=51.89 Aligned_cols=88 Identities=7% Similarity=-0.005 Sum_probs=71.5
Q ss_pred HHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccccchhhHHHHHHHHHHhhccCCchhHHhhcCCCCCCcHH
Q 036944 47 NVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKR 126 (370)
Q Consensus 47 dWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~pl~~l~~~~~~~yt~~~ 126 (370)
++|...+..++++.++.-.|..++.+........ ...+..+|++|+++|++......+..++..... .+ ..
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~------gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~--vs-~~ 180 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTS------GKSPAGLVAAALYIASLLEGEKRTQREVAEVAR--VT-EV 180 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCT------TSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHT--CC-HH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCccc------CCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhC--CC-HH
Confidence 5667788889999999999999999999766555 455889999999999999887667777754333 56 88
Q ss_pred HHHHHHHHHHHHcCCcc
Q 036944 127 HILSMELQILKGINWRL 143 (370)
Q Consensus 127 ~Il~mE~~IL~~L~w~L 143 (370)
+|.+.=+.+.+.|+-.+
T Consensus 181 ti~~~~~~l~~~l~~~~ 197 (200)
T 1ais_B 181 TVRNRYKELVEKLKIKV 197 (200)
T ss_dssp HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 99999899999998554
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.53 E-value=0.1 Score=46.47 Aligned_cols=86 Identities=17% Similarity=0.215 Sum_probs=68.7
Q ss_pred hHHHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcCCCHHHHH
Q 036944 148 AMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELE 227 (370)
Q Consensus 148 p~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e~L~ 227 (370)
...++..+...++-.. .+...|..+....+....+..+.+..||+||+|+|++.-+... -.+.+...++++..+|.
T Consensus 8 a~~~I~~~~~~L~L~~-~v~~~A~~~~~r~~~~~~~~~~~~~~v~aaclylAcK~ee~p~---~l~di~~~~~~~~~~i~ 83 (207)
T 1c9b_A 8 AFKEITTMADRINLPR-NIVDRTNNLFKQVYEQKSLKGRANDAIASACLYIACRQEGVPR---TFKEICAVSRISKKEIG 83 (207)
T ss_dssp HHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHHHHHHHHTTCCC---CHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHCCCHHHHH
Confidence 4567777777776543 6777888888888777778899999999999999999866532 36778888999999999
Q ss_pred HHHHHHHHHH
Q 036944 228 SCLKRTYEMC 237 (370)
Q Consensus 228 ~C~~~m~~l~ 237 (370)
++.+.|.+..
T Consensus 84 ~~~~~ll~~L 93 (207)
T 1c9b_A 84 RCFKLILKAL 93 (207)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9998877753
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=93.40 E-value=0.45 Score=46.14 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=71.6
Q ss_pred ccChHHHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcCCCHH
Q 036944 145 AVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEE 224 (370)
Q Consensus 145 ~pTp~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e 224 (370)
.-..+..|..+...++-.. .+...|..+...+.....+-..+...|||||||+|++..+... -...+..+++++..
T Consensus 126 L~~a~~~I~~~~~~L~Lp~-~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~~pr---tl~eI~~~~~v~~k 201 (345)
T 4bbr_M 126 VQAAFAKITMLCDAAELPK-IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVAR---TFKEIQSLIHVKTK 201 (345)
T ss_dssp TTHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBC---CHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCc---cHHHHHHHhCCCHH
Confidence 3557778888887776544 6888999998888766556678899999999999999876532 36788889999999
Q ss_pred HHHHHHHHHHHHHh
Q 036944 225 ELESCLKRTYEMCM 238 (370)
Q Consensus 225 ~L~~C~~~m~~l~~ 238 (370)
+|..+++.|.+.+.
T Consensus 202 eigr~~k~l~~~L~ 215 (345)
T 4bbr_M 202 EFGKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999987643
No 23
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=91.24 E-value=1.6 Score=39.34 Aligned_cols=85 Identities=8% Similarity=0.063 Sum_probs=61.4
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccC-cchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhc--------
Q 036944 149 MYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQ-YKPSVMAASSLLTACRLLYPNEYNQCERDILATK-------- 219 (370)
Q Consensus 149 ~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~-y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~-------- 219 (370)
.+++......++-.. .....|..++...+....+.. +.+..||+|||++|++.-+... -.+.+...+
T Consensus 32 ~~~i~~v~~~l~L~~-~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~~~---~l~d~~~~~~~~~~~~~ 107 (235)
T 1zp2_A 32 WKVVQTFGDRLRLRQ-RVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEECPV---HIRTICNEANDLWSLKV 107 (235)
T ss_dssp HHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTCCC---CHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHcCCCH-HHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccCcc---cHHHHHHHHHHHccchh
Confidence 456666666665443 566688888888777777888 9999999999999999866422 134444433
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 036944 220 HIKEEELESCLKRTYEMC 237 (370)
Q Consensus 220 ~~~~e~L~~C~~~m~~l~ 237 (370)
.++.++|.++-..|.+..
T Consensus 108 ~~~~~~I~~~E~~iL~~L 125 (235)
T 1zp2_A 108 KLSRSNISEIEFEIISVL 125 (235)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHHC
Confidence 578999999888877653
No 24
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=90.48 E-value=0.27 Score=47.58 Aligned_cols=88 Identities=15% Similarity=0.167 Sum_probs=70.5
Q ss_pred ChHHHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcCCCHHHH
Q 036944 147 TAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEEL 226 (370)
Q Consensus 147 Tp~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e~L 226 (370)
..+.++..+...++-. +.+...|..+...++....+-..+...||+||||+|++..+... -...+..+++++..+|
T Consensus 128 ~a~~~I~~~~~~L~Lp-~~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~~pr---tl~ei~~~~~v~~keI 203 (345)
T 3k7a_M 128 AAFAKITMLCDAAELP-KIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAEVAR---TFKEIQSLIHVKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHTTCC-HHHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTBSSC---CHHHHHHSSSCCSHHH
T ss_pred HHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcCCCc---cHHHHHHHHCCCHHHH
Confidence 4567777777777544 36778898888888776667788999999999999998765432 3677888999999999
Q ss_pred HHHHHHHHHHHh
Q 036944 227 ESCLKRTYEMCM 238 (370)
Q Consensus 227 ~~C~~~m~~l~~ 238 (370)
.++.+.|.+.+.
T Consensus 204 gr~~~~l~~~L~ 215 (345)
T 3k7a_M 204 GKTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 25
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=87.89 E-value=10 Score=34.15 Aligned_cols=150 Identities=12% Similarity=0.066 Sum_probs=89.4
Q ss_pred HHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccccchhhHHHHHHHHHHhhccCCchhHH-hhcCCCCC
Q 036944 44 VALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYF-ERDNNLNE 122 (370)
Q Consensus 44 ~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~pl~~l-~~~~~~~y 122 (370)
.+.+-|..++.+-+++..++--||.+-..|.....-.... ..+-+-+|++|+.||+--....+|+.++ +.+.+ .
T Consensus 14 ~M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqR---vE~q~dVAAAc~miAae~~~~PiplaE~r~lD~s--L 88 (260)
T 3h4c_A 14 TMLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQR---VERQPDVAAACLMIAAEEAQQPLPLAEVRCLDSS--L 88 (260)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCC---CCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHCTT--C
T ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhccc---ccccHHHHHHHHHHHHHHcCCCccHHHHHHHhhh--h
Confidence 3456678899998999999999999999988544322111 5568899999999998644444577665 33433 2
Q ss_pred CcHHHHHHHHHHHHHHcCCc-----ccccChHHHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHH
Q 036944 123 DYKRHILSMELQILKGINWR-----LRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLL 197 (370)
Q Consensus 123 t~~~~Il~mE~~IL~~L~w~-----L~~pTp~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~ 197 (370)
. .-++.+. .|+..|+-. +...-.-..+..|+..++-........|..|+...-.-.....+---.--.-|++
T Consensus 89 ~-Dvelrr~--Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s~Y~p~C~rL~~ai~~ve~LA~~~~~drii~AlL 165 (260)
T 3h4c_A 89 G-DVELRRA--DIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVSLYLPHCKRLLTALGRVEALAGLTVADRVTTALL 165 (260)
T ss_dssp C-CHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHHH
T ss_pred h-HHHHHHH--HHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2 2333333 455555542 1112233445566666654433334456666655444444555555444555677
Q ss_pred HHHH
Q 036944 198 TACR 201 (370)
Q Consensus 198 lA~~ 201 (370)
+|+-
T Consensus 166 LArT 169 (260)
T 3h4c_A 166 LART 169 (260)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 26
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=84.33 E-value=3.6 Score=37.34 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=58.0
Q ss_pred HHHHHhHHhcCCCc----hHHHHHHHHHHHHhcCCccCCcccCccccchhhHHHHHHHHHHhhccCCchh-------HH-
Q 036944 47 NVILKNSKCFNFDA----FIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFI-------YF- 114 (370)
Q Consensus 47 dWl~~V~~~~~l~~----eTl~lAv~y~DRfLs~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~pl~-------~l- 114 (370)
+++......++.+. ++..+|..+++.-+.....- ......||++|+++|++......|.. ..
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l------~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~ 226 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSL------QWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWW 226 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGG------TSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGG
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchh------ccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHH
Confidence 45556666777765 56778888888776554443 45588999999999999976543311 00
Q ss_pred hhcCCCCCCcHHHHHHHHHHHHHHcC
Q 036944 115 ERDNNLNEDYKRHILSMELQILKGIN 140 (370)
Q Consensus 115 ~~~~~~~yt~~~~Il~mE~~IL~~L~ 140 (370)
....+ .++ .++|..+-..|++...
T Consensus 227 ~~~~~-~~~-~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 227 EQFVQ-DVP-VDVLEDICHQILDLYS 250 (258)
T ss_dssp GGTSS-SCC-HHHHHHHHHHHHTTTS
T ss_pred HHhcc-CCC-HHHHHHHHHHHHHHHh
Confidence 01001 378 9999999888887654
No 27
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=83.96 E-value=9.6 Score=34.98 Aligned_cols=86 Identities=6% Similarity=-0.087 Sum_probs=60.8
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcC--CCHHHHH
Q 036944 150 YFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKH--IKEEELE 227 (370)
Q Consensus 150 ~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~--~~~e~L~ 227 (370)
+|+......++-.. .....|..+++..+....+.....-.+|+||+++|.+.-+.... -.+.+..+++ ++.++|.
T Consensus 43 ~wl~~v~~~~~l~~-~tl~lAv~~lDRfl~~~~v~~~~lqlv~~acL~iA~K~eE~~~p--~~~d~~~~~~~~~~~~eI~ 119 (269)
T 2b9r_A 43 DWLVQVQMKFRLLQ-ETMYMTVSIIDRFMQNNSVPKKMLQLVGVTAMFIASKYEEMYPP--EIGDFAFVTDNTYTKHQIR 119 (269)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHHHHHCSSCC--CHHHHHHHTCSSSCHHHHH
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHHhcCCCCcHHHhhHHHHHHHHHHHhcccccCc--cHHHHHHHhcCCCCHHHHH
Confidence 44555555554443 44557777888877777777888999999999999998665211 1455555553 8899999
Q ss_pred HHHHHHHHHHh
Q 036944 228 SCLKRTYEMCM 238 (370)
Q Consensus 228 ~C~~~m~~l~~ 238 (370)
++-..|.+...
T Consensus 120 ~mE~~IL~~L~ 130 (269)
T 2b9r_A 120 QMEMKILRALN 130 (269)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 99888877643
No 28
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=83.28 E-value=10 Score=35.92 Aligned_cols=83 Identities=10% Similarity=-0.004 Sum_probs=54.8
Q ss_pred HHHHHHhhCCC-ChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcCCC-------
Q 036944 151 FKEFFVGKIPV-GKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIK------- 222 (370)
Q Consensus 151 Fl~~fl~~l~~-~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~------- 222 (370)
++..+...+.. ........|..++...+....+..+.|..||+|||++|++.-+... -.+.+...+..+
T Consensus 63 ~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~---~l~d~v~~~~~~p~~~~~~ 139 (323)
T 1jkw_A 63 RLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDEFNV---SSPQFVGNLRESPLGQEKA 139 (323)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTTCCC---CHHHHGGGSSSCHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhcCCC---CHHHHHHHhccChhhhHHH
Confidence 44555555541 2345667888888888888888999999999999999999866431 134444334333
Q ss_pred HHHHHHHHHHHHHH
Q 036944 223 EEELESCLKRTYEM 236 (370)
Q Consensus 223 ~e~L~~C~~~m~~l 236 (370)
.++|..+-..|.+-
T Consensus 140 ~~~Il~~E~~iL~~ 153 (323)
T 1jkw_A 140 LEQILEYELLLIQQ 153 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45666665555543
No 29
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=81.14 E-value=11 Score=34.28 Aligned_cols=85 Identities=9% Similarity=-0.036 Sum_probs=56.4
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhc--CCCHHHHHH
Q 036944 151 FKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATK--HIKEEELES 228 (370)
Q Consensus 151 Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~--~~~~e~L~~ 228 (370)
|+......++-.. .....|..+++..+............+|+||+++|.+.-+.... -.+.+..++ .++.++|.+
T Consensus 57 wl~ev~~~~~l~~-etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p--~~~d~~~~~~~~~~~~~i~~ 133 (257)
T 1g3n_C 57 WMFSVCQEYNLEP-NVVALALNLLDRLLLIKQVSKEHFQKTGSACLLVASKLRSLTPI--STSSLCYAAADSFSRQELID 133 (257)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHCSSCC--CHHHHHHHTTTCSCHHHHHH
T ss_pred HHHHHHHHhCCCc-cHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHccccCC--CHHHHHHHHCCCCCHHHHHH
Confidence 3444444444333 34456777777777666666777889999999999998654211 135555554 388999999
Q ss_pred HHHHHHHHHh
Q 036944 229 CLKRTYEMCM 238 (370)
Q Consensus 229 C~~~m~~l~~ 238 (370)
+-..|.+...
T Consensus 134 mE~~iL~~L~ 143 (257)
T 1g3n_C 134 QEKELLEKLA 143 (257)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHCC
Confidence 8888777643
No 30
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=80.30 E-value=13 Score=34.43 Aligned_cols=84 Identities=10% Similarity=0.095 Sum_probs=55.9
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhh-----------
Q 036944 150 YFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILAT----------- 218 (370)
Q Consensus 150 ~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~----------- 218 (370)
+||......++-.. .....|..+++..+....+..+.+..||+||+++|++.-+.... . .+.+...
T Consensus 48 ~~I~~v~~~l~L~~-~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE~~~~-~-~~di~~~~~~~~k~~~~~ 124 (285)
T 3rgf_B 48 NVIQALGEHLKLRQ-QVIATATVYFKRFYARYSLKSIDPVLMAPTCVFLASKVEEFGVV-S-NTRLIAAATSVLKTRFSY 124 (285)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHHHTTSCCC-C-HHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHHHHhCCchhcCHHHHHHHHHHHHHhhhccccc-c-HHHHHHHHHHHHcccccc
Confidence 34444444444433 56678888888888888888999999999999999998654321 1 1222211
Q ss_pred -----cCCCHHHHHHHHHHHHHH
Q 036944 219 -----KHIKEEELESCLKRTYEM 236 (370)
Q Consensus 219 -----~~~~~e~L~~C~~~m~~l 236 (370)
..+..++|.++-..|.+.
T Consensus 125 ~~~~~~~~~~~~Il~~E~~iL~~ 147 (285)
T 3rgf_B 125 AFPKEFPYRMNHILECEFYLLEL 147 (285)
T ss_dssp TCCSCCCCCHHHHHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHHHHHHH
Confidence 125678888887777654
No 31
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=80.07 E-value=15 Score=33.68 Aligned_cols=69 Identities=9% Similarity=-0.006 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhc--CCCHHHHHHHHHHHHHHHh
Q 036944 168 RTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATK--HIKEEELESCLKRTYEMCM 238 (370)
Q Consensus 168 ~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~--~~~~e~L~~C~~~m~~l~~ 238 (370)
..|..+++..+............+|+||+++|.+.-+.... -.+.+..++ .++.++|.++-..|.+...
T Consensus 79 ~lAv~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~~p~--~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~ 149 (271)
T 2w96_A 79 PLAMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKETIPL--TAEKLCIYTDNSIRPEELLQMELLLVNKLK 149 (271)
T ss_dssp HHHHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCSSCC--CHHHHHHHTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHhcCCCCHHHHHHHHHHHHHHCC
Confidence 45666666666655666788999999999999998765211 134555554 3889999999888877643
No 32
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=79.27 E-value=11 Score=34.44 Aligned_cols=85 Identities=5% Similarity=-0.059 Sum_probs=54.2
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhc--CCCHHHHHH
Q 036944 151 FKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATK--HIKEEELES 228 (370)
Q Consensus 151 Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~--~~~~e~L~~ 228 (370)
|+......++-.. .....|..+++..+....+.....-.+|+||+++|.+.-+.... -.+.+..++ .++.++|.+
T Consensus 45 wl~~v~~~~~l~~-~tl~lAv~~lDRfls~~~v~~~~lqlv~~acl~iA~K~ee~~~~--~~~d~~~i~~~~~~~~~i~~ 121 (260)
T 2cch_B 45 WLVEVGEEYKLQN-ETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEEIYPP--EVAEFVYITDDTYTKKQVLR 121 (260)
T ss_dssp HHHHHHHHTTCCH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCSSCC--CHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHhCCCH-HHHHHHHHHHHHHhccCCCCHHHHhHHHHHHHHHHHHhcccCCC--CHHHHHHHHcCCcCHHHHHH
Confidence 3444444443333 33345556666655555555667889999999999998765211 145555555 388999999
Q ss_pred HHHHHHHHHh
Q 036944 229 CLKRTYEMCM 238 (370)
Q Consensus 229 C~~~m~~l~~ 238 (370)
+-..|.+...
T Consensus 122 mE~~iL~~L~ 131 (260)
T 2cch_B 122 MEHLVLKVLT 131 (260)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 9888877643
No 33
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=78.97 E-value=14 Score=33.57 Aligned_cols=86 Identities=10% Similarity=0.001 Sum_probs=57.7
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhc--CCCHHHHH
Q 036944 150 YFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATK--HIKEEELE 227 (370)
Q Consensus 150 ~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~--~~~~e~L~ 227 (370)
+|+......++-.. .....|..+++..+............+|+||+++|.+.-+.... -.+.+..++ .++.++|.
T Consensus 57 dwl~~v~~~~~l~~-etl~lAv~~~DRfls~~~v~~~~lqLv~~acl~iA~K~eE~~~p--~~~d~~~~~~~~~~~~~i~ 133 (254)
T 2f2c_A 57 TWMHLLCESFELDK-SVFPLSVSILDRYLCKKQGTKKTLQKIGAACVLIGSKIRTVKPM--TVSKLTYLSCDCFTNLELI 133 (254)
T ss_dssp HHHHHHHHHTTCCT-THHHHHHHHHHHHTTTSCCCTTTHHHHHHHHHHHHHHHHCSSCC--CHHHHSTTC---CCHHHHH
T ss_pred HHHHHHHHHHCCCc-hHHHHHHHHHHHHHccCCcCHHHccHHHHHHHHHHHHhcccCCC--CHHHHHHHhCCCCCHHHHH
Confidence 34444444444333 33457777778877777777888999999999999998654211 134454443 37899999
Q ss_pred HHHHHHHHHHh
Q 036944 228 SCLKRTYEMCM 238 (370)
Q Consensus 228 ~C~~~m~~l~~ 238 (370)
++-..|.+...
T Consensus 134 ~mE~~IL~~L~ 144 (254)
T 2f2c_A 134 NQEKDILEALK 144 (254)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
Confidence 98888877644
No 34
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=78.02 E-value=24 Score=31.84 Aligned_cols=57 Identities=12% Similarity=0.169 Sum_probs=45.7
Q ss_pred hHHHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCC
Q 036944 148 AMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYP 205 (370)
Q Consensus 148 p~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~ 205 (370)
..+|+......++-.. .....|..+++..+....+..+.+..+|+||+++|.+.-+.
T Consensus 34 ~~~~i~~v~~~l~l~~-~t~~~A~~~~dRf~~~~~~~~~~~qlv~~acL~lA~K~EE~ 90 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQ-LTINTAIVYMHRFYMHHSFTKFNKNIISSTALFLAAKVEEQ 90 (257)
T ss_dssp HHHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHhhCChhhhCHHHHHHHHHHHHhccccC
Confidence 4466666666665544 56678888889988888899999999999999999998664
No 35
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=72.92 E-value=18 Score=33.94 Aligned_cols=85 Identities=6% Similarity=-0.048 Sum_probs=54.2
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcC--CCHHHHHH
Q 036944 151 FKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKH--IKEEELES 228 (370)
Q Consensus 151 Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~--~~~e~L~~ 228 (370)
|+......++-.. .....|..+++..+....+.......+|+||+++|.+.-+.... . .+.+..+++ ++.++|.+
T Consensus 77 wl~ev~~~~~l~~-~t~~lAv~~lDRfls~~~v~~~~lqLv~~tcL~lAsK~eE~~p~-~-~~~l~~~~~~~~~~~~i~~ 153 (306)
T 3g33_B 77 WMLEVCEEQRCEE-EVFPLAMNYLDRYLSCVPTRKAQLQLLGAVCMLLASKLRETTPL-T-IEKLCIYTDHAVSPRQLRD 153 (306)
T ss_dssp HHHHHHHHTTCCT-THHHHHHHHHHHHHHHCCCCGGGHHHHHHHHHHHHHHHHCSSCC-C-TTHHHHHTTTSSCHHHHHH
T ss_pred HHHHHHHHhCCcH-hHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccCCCC-C-HHHHHHHhccCccHHHHHH
Confidence 3444434433333 23345666666666656667788999999999999997654321 1 244444443 78999998
Q ss_pred HHHHHHHHHh
Q 036944 229 CLKRTYEMCM 238 (370)
Q Consensus 229 C~~~m~~l~~ 238 (370)
+-..|.+.+.
T Consensus 154 mE~~IL~~L~ 163 (306)
T 3g33_B 154 WEVLVLGKLK 163 (306)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 8887776543
No 36
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=69.76 E-value=31 Score=31.85 Aligned_cols=71 Identities=10% Similarity=-0.057 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhccc-ccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhc--CCCHHHHHHHHHHHHHHHh
Q 036944 166 MRRTLNEIIIQAQGD-INFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATK--HIKEEELESCLKRTYEMCM 238 (370)
Q Consensus 166 l~~~a~~ll~~sl~d-~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~--~~~~e~L~~C~~~m~~l~~ 238 (370)
....|..+++..+.. ..........+|+||+++|.+.-+.... -.+.+..++ .++.++|.++-..|.+...
T Consensus 70 tl~lAv~~lDRfls~~~~v~~~~lqlv~~acL~iA~K~eE~~~p--~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~ 143 (283)
T 1w98_B 70 TFYLAQDFFDRYMATQENVVKTLLQLIGISSLFIAAKLEEIYPP--KLHQFAYVTDGACSGDEILTMELMIMKALK 143 (283)
T ss_dssp HHHHHHHHHHHHHHHCCCCCGGGHHHHHHHHHHHHHHHHCSSCC--CHHHHHHTTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcccCCC--cHHHHHHHHcCCCCHHHHHHHHHHHHHHcC
Confidence 334555566655543 2455678899999999999998654221 145555555 4889999999888877654
No 37
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=67.46 E-value=12 Score=36.08 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=45.2
Q ss_pred hHHHHHHHHhhCCCChHHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCC
Q 036944 148 AMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYP 205 (370)
Q Consensus 148 p~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~ 205 (370)
..+||......+.-.. .....|..+++..+....+..+.+..||+|||++|.+.-+.
T Consensus 41 ~v~wI~ev~~~l~L~~-~t~~tAv~~~dRFl~~~sv~~~~~qlva~acLfLA~K~EE~ 97 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQ-LTINTAIVYMHRFYMIQSFTRFPGNSVAPAALFLAAKVEEQ 97 (358)
T ss_dssp HHHHHHHHHTTTTCCH-HHHHHHHHHHHHHTTTSCTTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhccC
Confidence 4556666666655444 56678889999998888899999999999999999998654
No 38
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=57.70 E-value=1.1e+02 Score=28.70 Aligned_cols=90 Identities=8% Similarity=-0.009 Sum_probs=60.3
Q ss_pred ChHHHHHHHHhhCCCChHHHHHHHHHHHHHhcc--cccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcCCCHH
Q 036944 147 TAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQG--DINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEE 224 (370)
Q Consensus 147 Tp~~Fl~~fl~~l~~~~~~l~~~a~~ll~~sl~--d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e 224 (370)
+-.+|+..+..........+.....|+--+... ..........-+-++|+.+|.+.+....+ +.+.|..+.|+..+
T Consensus 76 SI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l~~~nvHRLlLtALmlAsK~ldD~~y--sN~~wAkVgGisl~ 153 (293)
T 2pmi_B 76 SIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTLNSLTAHRFLLTATTVATKGLCDSFS--TNAHYAKVGGVRCH 153 (293)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCCSTTTHHHHHHHHHHHHHHHHCSSCC--CHHHHHHHHTSCHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCccCCchHHHHHHHHHHHHHHhcccccc--ChhHhhhccCcCHH
Confidence 456888888877665543333222333222221 22233567888999999999999875432 57888999999999
Q ss_pred HHHHHHHHHHHHHh
Q 036944 225 ELESCLKRTYEMCM 238 (370)
Q Consensus 225 ~L~~C~~~m~~l~~ 238 (370)
+|...=..+..+..
T Consensus 154 ELN~LE~eFL~lLd 167 (293)
T 2pmi_B 154 ELNILENDFLKRVN 167 (293)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcC
Confidence 99888777776643
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=56.57 E-value=69 Score=29.03 Aligned_cols=70 Identities=7% Similarity=-0.086 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhc--CCCHHHHHHHHHHHHHHHhc
Q 036944 168 RTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATK--HIKEEELESCLKRTYEMCMD 239 (370)
Q Consensus 168 ~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~--~~~~e~L~~C~~~m~~l~~~ 239 (370)
..|-.+++.-+............+|++|+++|.+.-+.... . .+.+..++ .++.++|.+.=..|.+...+
T Consensus 71 ~lAv~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~p~-~-~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w 142 (252)
T 1f5q_B 71 PLAVALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYMPI-K-ATQLAYLCGGATTADKLLTLEVKSLDTLSW 142 (252)
T ss_dssp HHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSSCC-C-HHHHHHHHCTTCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcCCC-C-HHHHHHHhCCCCCHHHHHHHHHHHHHHCCC
Confidence 34555555554444455667889999999999998665322 1 34444444 47889998888777776443
No 40
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=45.73 E-value=54 Score=25.63 Aligned_cols=51 Identities=18% Similarity=0.366 Sum_probs=40.1
Q ss_pred CcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcCCCHHHHHHHHHHHHHHHh
Q 036944 185 QYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCM 238 (370)
Q Consensus 185 ~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e~L~~C~~~m~~l~~ 238 (370)
.+.-=+-++||+|.|++.+... .+ ...+....|+.+.+....+..|.++..
T Consensus 42 D~s~P~f~aaA~~~acr~~K~k-Vd--K~KL~~~s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 42 DLSRPLFTSAALLSACKILKLK-VD--KNKMVATSGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp CTTSHHHHHHHHHHHHHHTTCC-CC--HHHHHHTTCBCHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHHHHHccC-CC--HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3445567888999999987654 22 567888999999999999999988754
No 41
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=38.76 E-value=46 Score=27.74 Aligned_cols=103 Identities=11% Similarity=0.193 Sum_probs=56.2
Q ss_pred HHHHHHHHHhHHhc---CCCchHHHHHHHHHHHHh-----cCCccCCcccCccccchhhHHHHHHHHHHhhccC--Cchh
Q 036944 43 KVALNVILKNSKCF---NFDAFIPYLAMNYFDLFI-----SRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQA--FRFI 112 (370)
Q Consensus 43 ~~lvdWl~~V~~~~---~l~~eTl~lAv~y~DRfL-----s~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~--~pl~ 112 (370)
..+|-|+..|-..+ |.+...+-.-.|++=-|+ -...+. . ..++|-+-.|||++|--|-... .|++
T Consensus 28 ~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVFvYmL~r~~v~~~~~--s---e~eLqa~~lTCLYlsYSYmGNEISYPLK 102 (149)
T 3o0g_D 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLYMLCRDVISSEVG--S---DHELQAVLLTCLYLSYSYMGNEISYPLK 102 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHHHHHHHHHHSCTTCC--S---HHHHHHHHHHHHHHHHHHHCSSSCCCSG
T ss_pred chhhhhHHhhhHHHHHccchhcccccchHHHHHHHHHHHHcccccC--C---HHHHHHHHHHHHHHHHHHhcccccccCc
Confidence 46788888885432 333333222222222222 222222 1 5679999999999999987655 4787
Q ss_pred HHhhcCCCCCCcHHHHHHHHHHHHHHcCCccc--ccChHHHHHHH
Q 036944 113 YFERDNNLNEDYKRHILSMELQILKGINWRLR--AVTAMYFKEFF 155 (370)
Q Consensus 113 ~l~~~~~~~yt~~~~Il~mE~~IL~~L~w~L~--~pTp~~Fl~~f 155 (370)
-|..+++ ++.+-+-=..|+..+.=++- ...|..|-+-|
T Consensus 103 PFlv~~~-----k~~FW~rcl~iin~~S~~ML~iN~dp~~Ftevf 142 (149)
T 3o0g_D 103 PFLVESC-----KEAFWDRCLSVINLMSSKMLQINADPHYFTQVF 142 (149)
T ss_dssp GGCCCSC-----HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chhhccc-----HHHHHHHHHHHHHhhchhhheecCCccHHHHHH
Confidence 7766544 55555544455544433322 12344444444
No 42
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=36.98 E-value=47 Score=28.99 Aligned_cols=66 Identities=14% Similarity=0.308 Sum_probs=42.2
Q ss_pred cccchhhHHHHHHHHHHhhccC--CchhHHhhcCCCCCCcHHHHHHHHHHHHHHcCCccc--ccChHHHHHHHHh
Q 036944 87 RDDIVLAAICCLTLAWKVRNQA--FRFIYFERDNNLNEDYKRHILSMELQILKGINWRLR--AVTAMYFKEFFVG 157 (370)
Q Consensus 87 ~~~lqLiavtCL~IAsKvEE~~--~pl~~l~~~~~~~yt~~~~Il~mE~~IL~~L~w~L~--~pTp~~Fl~~fl~ 157 (370)
..++|.+-.|||+||--|-... .|++-|..+.+ ++.+..-=..|+..+.=++- ...|..|-+-|..
T Consensus 120 e~eLqa~vLTCLYlsYSYmGNEISYPLKPFlve~~-----ke~FWdRCl~ii~~~S~kML~iN~~p~~Ftevf~e 189 (208)
T 1unl_D 120 DHELQAVLLTCLYLSYSYMGNEISYPLKPFLVESC-----KEAFWDRCLSVINLMSSKMLQINADPHYFTQVFSD 189 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSSCCCSGGGCCSSC-----HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhCccccccCcceeecCC-----HHHHHHHHHHHHHhhchhhheecCCccHHHHHHHH
Confidence 5679999999999999987655 47887766544 55555544455544443322 2345556555543
No 43
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=36.20 E-value=1.5e+02 Score=23.03 Aligned_cols=83 Identities=12% Similarity=-0.057 Sum_probs=52.7
Q ss_pred HHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccccchhhHHHHHHHHHHhhccCCchhHHhhcCCCCCCcHHHH
Q 036944 49 ILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKRHI 128 (370)
Q Consensus 49 l~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~~lqLiavtCL~IAsKvEE~~~pl~~l~~~~~~~yt~~~~I 128 (370)
+.++|..|++.. ..-.|-.++++|=..-.-.+.... .-.-...+++|+|.|||.--..++-..|....+ -+ +.++
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~-D~s~P~f~aaA~~~acr~~K~kVdK~KL~~~s~--lk-~~~f 80 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDL-DLSRPLFTSAALLSACKILKLKVDKNKMVATSG--VK-KAIF 80 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHC-CTTSHHHHHHHHHHHHHHTTCCCCHHHHHHTTC--BC-HHHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccc-cccccHHHHHHHHHHHHHHccCCCHHHHHHHHC--CC-HHHH
Confidence 357788888776 556888999999855321000000 122445678899999999888887666654333 34 6666
Q ss_pred HHHHHHHH
Q 036944 129 LSMELQIL 136 (370)
Q Consensus 129 l~mE~~IL 136 (370)
-+.|..+-
T Consensus 81 ~~l~~~~e 88 (95)
T 3m03_A 81 DRLCKQLE 88 (95)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
Done!