Query 036948
Match_columns 514
No_of_seqs 209 out of 1361
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 6E-141 1E-145 1103.2 43.2 477 35-514 29-508 (524)
2 PLN02998 beta-glucosidase 100.0 2E-132 4E-137 1067.1 46.3 484 1-514 1-487 (497)
3 PLN02849 beta-glucosidase 100.0 2E-132 5E-137 1067.9 46.5 474 6-513 5-481 (503)
4 PLN02814 beta-glucosidase 100.0 2E-131 4E-136 1061.6 46.5 456 37-513 22-481 (504)
5 PRK13511 6-phospho-beta-galact 100.0 2E-127 4E-132 1027.5 45.0 447 41-514 3-465 (469)
6 COG2723 BglB Beta-glucosidase/ 100.0 7E-128 1E-132 999.5 39.8 444 41-513 2-451 (460)
7 TIGR01233 lacG 6-phospho-beta- 100.0 3E-127 6E-132 1024.2 45.5 444 41-513 2-462 (467)
8 PRK09593 arb 6-phospho-beta-gl 100.0 7E-127 2E-131 1023.0 45.0 444 40-513 3-471 (478)
9 PF00232 Glyco_hydro_1: Glycos 100.0 5E-128 1E-132 1032.3 35.5 446 41-513 3-451 (455)
10 PRK09589 celA 6-phospho-beta-g 100.0 1E-126 3E-131 1020.2 45.7 443 42-513 3-470 (476)
11 PRK15014 6-phospho-beta-glucos 100.0 5E-126 1E-130 1015.2 46.0 446 38-513 1-471 (477)
12 PRK09852 cryptic 6-phospho-bet 100.0 4E-125 9E-130 1006.6 45.6 442 42-513 3-467 (474)
13 TIGR03356 BGL beta-galactosida 100.0 6E-122 1E-126 975.5 41.9 427 43-508 1-427 (427)
14 smart00633 Glyco_10 Glycosyl h 99.6 6.2E-14 1.3E-18 139.8 23.6 250 119-507 2-253 (254)
15 PF02449 Glyco_hydro_42: Beta- 99.4 1.1E-12 2.4E-17 138.0 9.6 109 97-211 10-141 (374)
16 PF07745 Glyco_hydro_53: Glyco 99.1 2.4E-08 5.1E-13 102.8 25.9 251 100-475 27-299 (332)
17 PF00150 Cellulase: Cellulase 99.1 7.3E-10 1.6E-14 110.7 10.4 109 98-211 22-134 (281)
18 PF00331 Glyco_hydro_10: Glyco 99.0 5.4E-08 1.2E-12 100.4 22.6 267 118-510 44-318 (320)
19 PRK10150 beta-D-glucuronidase; 99.0 7E-08 1.5E-12 107.9 24.2 264 96-512 312-592 (604)
20 PF01229 Glyco_hydro_39: Glyco 98.9 9E-08 2E-12 104.2 18.4 290 98-510 40-358 (486)
21 COG3693 XynA Beta-1,4-xylanase 98.9 7.3E-07 1.6E-11 89.6 23.1 266 120-513 69-342 (345)
22 COG1874 LacA Beta-galactosidas 98.8 7.1E-09 1.5E-13 114.7 7.5 119 98-222 31-176 (673)
23 PF02836 Glyco_hydro_2_C: Glyc 98.0 4.1E-05 8.9E-10 78.1 12.0 92 96-208 35-132 (298)
24 COG3867 Arabinogalactan endo-1 97.9 0.0064 1.4E-07 60.9 23.5 253 101-473 67-343 (403)
25 PF01301 Glyco_hydro_35: Glyco 97.8 0.00014 3.1E-09 75.1 10.1 109 98-209 25-151 (319)
26 COG2730 BglC Endoglucanase [Ca 97.4 0.0004 8.8E-09 74.1 8.7 111 100-210 76-193 (407)
27 PLN03059 beta-galactosidase; P 97.3 0.0021 4.6E-08 73.1 13.2 110 97-210 59-189 (840)
28 PLN00197 beta-amylase; Provisi 97.0 0.011 2.4E-07 64.0 13.1 109 95-210 125-272 (573)
29 PF01373 Glyco_hydro_14: Glyco 96.9 0.0013 2.8E-08 69.0 5.4 106 96-209 15-151 (402)
30 PLN02161 beta-amylase 96.9 0.0039 8.5E-08 66.7 8.9 111 93-210 113-262 (531)
31 PLN02803 beta-amylase 96.8 0.0039 8.6E-08 67.1 8.5 108 96-210 106-252 (548)
32 PLN02801 beta-amylase 96.8 0.0068 1.5E-07 65.0 9.6 101 94-199 34-173 (517)
33 PF14587 Glyco_hydr_30_2: O-Gl 96.7 0.0043 9.4E-08 64.8 7.2 101 107-210 57-185 (384)
34 PLN02905 beta-amylase 96.5 0.014 3E-07 63.9 9.8 101 93-198 282-421 (702)
35 PLN02705 beta-amylase 96.5 0.013 2.7E-07 64.0 9.5 100 94-198 265-403 (681)
36 PF03198 Glyco_hydro_72: Gluca 96.2 0.082 1.8E-06 54.0 13.2 49 97-161 53-101 (314)
37 PF11790 Glyco_hydro_cc: Glyco 96.2 0.03 6.4E-07 55.5 10.0 66 400-477 152-217 (239)
38 PF13204 DUF4038: Protein of u 96.1 0.036 7.9E-07 56.5 10.0 105 99-208 32-156 (289)
39 KOG0496 Beta-galactosidase [Ca 95.5 0.066 1.4E-06 59.2 9.7 108 98-209 50-176 (649)
40 PF14488 DUF4434: Domain of un 95.1 0.14 3.1E-06 47.9 9.1 104 97-209 20-131 (166)
41 PRK09525 lacZ beta-D-galactosi 93.8 0.22 4.8E-06 59.3 9.1 91 95-209 369-464 (1027)
42 PRK10340 ebgA cryptic beta-D-g 92.5 0.45 9.7E-06 56.8 9.0 90 96-209 354-451 (1021)
43 COG3250 LacZ Beta-galactosidas 91.8 0.63 1.4E-05 53.9 8.9 91 92-209 316-408 (808)
44 COG3934 Endo-beta-mannanase [C 90.4 0.15 3.3E-06 54.5 2.0 110 98-210 27-150 (587)
45 COG3664 XynB Beta-xylosidase [ 84.8 1.7 3.7E-05 45.8 5.7 99 106-211 14-117 (428)
46 PF12891 Glyco_hydro_44: Glyco 81.4 12 0.00026 37.1 9.7 73 139-211 24-138 (239)
47 smart00642 Aamy Alpha-amylase 80.5 3.8 8.2E-05 38.2 5.8 66 94-159 16-90 (166)
48 PF00332 Glyco_hydro_17: Glyco 77.4 2 4.3E-05 44.3 3.2 83 401-494 212-303 (310)
49 PF10566 Glyco_hydro_97: Glyco 75.4 15 0.00033 37.1 8.7 118 69-194 9-149 (273)
50 PF07488 Glyco_hydro_67M: Glyc 74.2 24 0.00053 36.1 9.7 88 96-197 56-150 (328)
51 PF14871 GHL6: Hypothetical gl 72.8 11 0.00023 33.9 6.3 60 101-161 4-66 (132)
52 PF02638 DUF187: Glycosyl hydr 70.4 18 0.0004 37.2 8.2 98 95-196 17-154 (311)
53 TIGR02402 trehalose_TreZ malto 67.6 19 0.00041 40.1 8.1 58 94-159 108-180 (542)
54 PLN02361 alpha-amylase 67.5 13 0.00028 39.9 6.5 68 94-161 26-100 (401)
55 PRK12313 glycogen branching en 64.4 25 0.00055 39.9 8.5 94 95-196 168-302 (633)
56 PF00128 Alpha-amylase: Alpha 64.1 6.4 0.00014 39.2 3.3 58 99-159 6-72 (316)
57 PRK05402 glycogen branching en 61.7 36 0.00077 39.4 9.2 94 95-196 263-397 (726)
58 PLN00196 alpha-amylase; Provis 60.5 15 0.00033 39.6 5.6 68 95-162 42-117 (428)
59 TIGR00612 ispG_gcpE 1-hydroxy- 58.6 52 0.0011 34.2 8.7 87 89-191 74-160 (346)
60 TIGR02403 trehalose_treC alpha 58.2 18 0.0004 40.2 5.9 59 93-159 23-95 (543)
61 PRK05799 coproporphyrinogen II 57.2 24 0.00052 37.1 6.3 94 100-211 99-195 (374)
62 TIGR01515 branching_enzym alph 56.0 63 0.0014 36.6 9.7 93 96-196 155-288 (613)
63 KOG2233 Alpha-N-acetylglucosam 55.6 39 0.00085 36.7 7.4 113 96-208 77-248 (666)
64 PRK09441 cytoplasmic alpha-amy 54.5 22 0.00049 38.8 5.7 70 94-163 19-107 (479)
65 PRK10933 trehalose-6-phosphate 53.8 24 0.00053 39.3 5.9 63 93-159 29-101 (551)
66 PRK14511 maltooligosyl trehalo 53.0 31 0.00067 40.6 6.7 56 96-159 19-89 (879)
67 PF12876 Cellulase-like: Sugar 51.3 9 0.00019 31.6 1.6 19 191-209 1-22 (88)
68 TIGR00433 bioB biotin syntheta 51.2 36 0.00077 34.3 6.3 54 100-158 123-177 (296)
69 COG5309 Exo-beta-1,3-glucanase 51.0 49 0.0011 33.4 6.8 53 90-160 56-108 (305)
70 PRK12581 oxaloacetate decarbox 49.6 36 0.00078 37.2 6.2 55 96-165 99-158 (468)
71 PF03659 Glyco_hydro_71: Glyco 49.4 94 0.002 33.1 9.2 87 97-211 17-103 (386)
72 cd02874 GH18_CFLE_spore_hydrol 49.4 66 0.0014 32.8 7.9 84 103-196 16-103 (313)
73 cd03174 DRE_TIM_metallolyase D 49.3 44 0.00096 32.8 6.5 81 100-193 77-157 (265)
74 PLN02447 1,4-alpha-glucan-bran 49.0 31 0.00067 40.0 5.8 94 94-195 247-382 (758)
75 cd06543 GH18_PF-ChiA-like PF-C 49.0 65 0.0014 32.9 7.7 79 104-197 19-105 (294)
76 PLN02784 alpha-amylase 48.6 41 0.00089 39.4 6.7 66 94-159 518-588 (894)
77 COG0821 gcpE 1-hydroxy-2-methy 47.2 1.3E+02 0.0028 31.3 9.3 86 91-192 78-163 (361)
78 cd07945 DRE_TIM_CMS Leptospira 46.9 1.2E+02 0.0026 30.7 9.2 65 100-165 77-141 (280)
79 PRK08599 coproporphyrinogen II 46.5 83 0.0018 33.1 8.3 95 100-211 100-196 (377)
80 PF02055 Glyco_hydro_30: O-Gly 45.9 1.3E+02 0.0028 33.3 9.8 97 404-511 319-419 (496)
81 TIGR02456 treS_nterm trehalose 45.8 28 0.0006 38.7 4.8 56 96-159 27-96 (539)
82 cd07939 DRE_TIM_NifV Streptomy 45.1 59 0.0013 32.4 6.6 59 100-159 72-130 (259)
83 PRK14705 glycogen branching en 45.0 1.1E+02 0.0023 37.7 9.7 100 96-196 764-897 (1224)
84 PRK09505 malS alpha-amylase; R 43.8 39 0.00085 38.7 5.7 68 96-163 229-318 (683)
85 TIGR03581 EF_0839 conserved hy 43.3 49 0.0011 32.3 5.3 52 96-157 134-207 (236)
86 PRK14706 glycogen branching en 43.1 93 0.002 35.5 8.4 98 96-196 166-299 (639)
87 COG2951 MltB Membrane-bound ly 43.0 30 0.00066 36.2 4.2 96 399-504 110-224 (343)
88 TIGR02090 LEU1_arch isopropylm 42.8 56 0.0012 34.4 6.3 61 99-160 73-133 (363)
89 PF05089 NAGLU: Alpha-N-acetyl 42.7 63 0.0014 33.6 6.4 112 96-208 18-184 (333)
90 TIGR02635 RhaI_grampos L-rhamn 42.3 2E+02 0.0044 30.6 10.3 91 90-198 34-131 (378)
91 cd06601 GH31_lyase_GLase GLase 41.9 1.4E+02 0.003 31.1 9.0 71 142-214 67-140 (332)
92 PRK14041 oxaloacetate decarbox 41.8 73 0.0016 34.9 7.1 55 96-165 89-148 (467)
93 PRK12399 tagatose 1,6-diphosph 41.5 1.3E+02 0.0029 31.1 8.4 89 103-202 111-202 (324)
94 PRK14040 oxaloacetate decarbox 41.0 77 0.0017 35.8 7.3 92 100-210 100-211 (593)
95 PRK04161 tagatose 1,6-diphosph 40.8 1.4E+02 0.003 31.1 8.4 90 102-202 112-204 (329)
96 TIGR01210 conserved hypothetic 39.7 95 0.0021 31.9 7.3 109 100-223 117-229 (313)
97 PF02065 Melibiase: Melibiase; 39.2 2E+02 0.0043 30.8 9.8 92 97-196 58-183 (394)
98 PF03511 Fanconi_A: Fanconi an 39.1 24 0.00052 27.3 2.0 39 121-163 19-57 (64)
99 PRK05692 hydroxymethylglutaryl 38.9 97 0.0021 31.5 7.1 86 99-194 81-167 (287)
100 cd07948 DRE_TIM_HCS Saccharomy 38.8 50 0.0011 33.1 5.0 60 100-160 74-133 (262)
101 PRK12858 tagatose 1,6-diphosph 38.7 1.2E+02 0.0026 31.8 7.8 57 103-164 112-168 (340)
102 COG1523 PulA Type II secretory 37.1 61 0.0013 37.2 5.8 57 103-159 206-285 (697)
103 TIGR00539 hemN_rel putative ox 36.8 1.4E+02 0.0029 31.3 8.1 61 100-166 100-163 (360)
104 PRK12568 glycogen branching en 36.4 55 0.0012 37.8 5.3 95 96-196 268-401 (730)
105 cd06593 GH31_xylosidase_YicI Y 35.9 2E+02 0.0043 29.2 9.0 107 98-209 25-161 (308)
106 TIGR02660 nifV_homocitr homoci 35.6 91 0.002 32.8 6.5 79 100-193 75-153 (365)
107 PRK00366 ispG 4-hydroxy-3-meth 35.6 1.9E+02 0.0041 30.4 8.6 72 107-191 98-169 (360)
108 PRK10785 maltodextrin glucosid 35.4 58 0.0013 36.7 5.3 55 97-159 179-246 (598)
109 cd06603 GH31_GANC_GANAB_alpha 35.3 1.6E+02 0.0035 30.5 8.3 71 142-212 67-167 (339)
110 PLN02746 hydroxymethylglutaryl 35.3 1.1E+02 0.0025 32.0 7.1 86 99-194 123-209 (347)
111 cd06600 GH31_MGAM-like This fa 34.8 2.2E+02 0.0048 29.2 9.1 70 141-211 66-164 (317)
112 cd06592 GH31_glucosidase_KIAA1 34.7 2E+02 0.0043 29.4 8.7 107 98-209 31-167 (303)
113 cd07944 DRE_TIM_HOA_like 4-hyd 34.4 1.4E+02 0.003 30.0 7.3 65 100-193 85-149 (266)
114 TIGR03234 OH-pyruv-isom hydrox 34.0 1.1E+02 0.0024 29.8 6.6 69 94-165 81-150 (254)
115 cd07943 DRE_TIM_HOA 4-hydroxy- 33.9 2.4E+02 0.0051 28.0 9.0 46 100-160 88-133 (263)
116 PLN02960 alpha-amylase 33.9 73 0.0016 37.5 5.7 96 93-196 412-549 (897)
117 cd06602 GH31_MGAM_SI_GAA This 33.5 1.9E+02 0.0042 30.0 8.5 68 142-210 69-168 (339)
118 PRK11858 aksA trans-homoaconit 33.5 1.2E+02 0.0025 32.2 7.0 59 100-159 78-136 (378)
119 PRK09058 coproporphyrinogen II 33.5 1.4E+02 0.0031 32.3 7.8 105 100-222 163-270 (449)
120 TIGR02401 trehalose_TreY malto 33.0 74 0.0016 37.3 5.7 60 96-163 15-91 (825)
121 PLN02389 biotin synthase 33.0 1.1E+02 0.0024 32.5 6.6 57 98-159 176-233 (379)
122 cd06591 GH31_xylosidase_XylS X 32.6 2.6E+02 0.0056 28.7 9.2 71 141-212 68-164 (319)
123 cd06545 GH18_3CO4_chitinase Th 32.3 1.4E+02 0.0029 29.5 6.9 74 116-196 26-99 (253)
124 TIGR03217 4OH_2_O_val_ald 4-hy 32.3 1.6E+02 0.0034 30.7 7.6 55 100-169 90-146 (333)
125 PRK10340 ebgA cryptic beta-D-g 32.0 1.2E+02 0.0027 36.5 7.5 75 415-513 506-600 (1021)
126 PRK12331 oxaloacetate decarbox 31.7 1.6E+02 0.0034 32.1 7.7 52 99-165 98-149 (448)
127 PRK14510 putative bifunctional 31.1 53 0.0012 40.3 4.3 66 94-159 182-267 (1221)
128 PRK12677 xylose isomerase; Pro 31.1 3.2E+02 0.0069 29.0 9.8 71 99-178 33-104 (384)
129 PRK03705 glycogen debranching 30.6 94 0.002 35.6 6.0 54 103-159 185-262 (658)
130 PRK07094 biotin synthase; Prov 30.4 79 0.0017 32.3 5.0 56 98-158 127-184 (323)
131 PRK13398 3-deoxy-7-phosphohept 30.4 1.7E+02 0.0038 29.4 7.3 73 92-169 36-108 (266)
132 PRK08195 4-hyroxy-2-oxovalerat 30.3 99 0.0021 32.3 5.7 68 100-197 91-158 (337)
133 cd07938 DRE_TIM_HMGL 3-hydroxy 30.2 1.7E+02 0.0037 29.5 7.2 84 100-193 76-160 (274)
134 PRK14507 putative bifunctional 30.0 1.1E+02 0.0023 38.8 6.7 66 96-169 757-844 (1693)
135 TIGR02100 glgX_debranch glycog 30.0 62 0.0013 37.2 4.4 55 103-159 190-265 (688)
136 cd06542 GH18_EndoS-like Endo-b 29.8 1.5E+02 0.0032 29.2 6.7 54 139-196 51-104 (255)
137 COG2515 Acd 1-aminocyclopropan 29.5 6.6E+02 0.014 26.1 12.5 193 97-314 76-285 (323)
138 TIGR02629 L_rham_iso_rhiz L-rh 29.3 2.7E+02 0.0059 29.9 8.7 89 99-203 72-171 (412)
139 PF13200 DUF4015: Putative gly 29.1 2.5E+02 0.0054 29.2 8.2 98 96-194 12-136 (316)
140 cd06419 GH25_muramidase_2 Unch 28.3 1.9E+02 0.004 27.6 6.7 26 178-203 109-134 (190)
141 PRK12755 phospho-2-dehydro-3-d 28.0 2.1E+02 0.0046 30.1 7.5 64 93-156 64-142 (353)
142 PRK07379 coproporphyrinogen II 27.8 2.6E+02 0.0057 29.7 8.5 104 100-221 115-221 (400)
143 COG0366 AmyA Glycosidases [Car 26.8 71 0.0015 34.4 4.1 57 101-159 33-97 (505)
144 TIGR00423 radical SAM domain p 26.2 85 0.0018 32.1 4.3 53 99-159 106-165 (309)
145 cd06525 GH25_Lyc-like Lyc mura 26.0 4.7E+02 0.01 24.3 9.0 50 102-165 13-62 (184)
146 PRK09432 metF 5,10-methylenete 25.8 1.7E+02 0.0036 30.0 6.3 73 139-211 189-283 (296)
147 cd02803 OYE_like_FMN_family Ol 25.6 5.8E+02 0.013 25.9 10.4 39 122-162 62-100 (327)
148 COG3589 Uncharacterized conser 25.5 1.2E+02 0.0027 31.5 5.2 72 100-187 19-90 (360)
149 PTZ00445 p36-lilke protein; Pr 25.3 89 0.0019 30.6 3.9 51 139-193 29-89 (219)
150 PF00150 Cellulase: Cellulase 25.1 1.5E+02 0.0032 29.0 5.7 56 141-199 23-78 (281)
151 TIGR01108 oadA oxaloacetate de 25.1 2.3E+02 0.005 31.9 7.7 93 99-210 93-205 (582)
152 PRK06256 biotin synthase; Vali 25.1 1.1E+02 0.0023 31.7 4.8 56 98-158 150-206 (336)
153 COG1501 Alpha-glucosidases, fa 25.0 2.3E+02 0.005 33.2 7.8 101 109-214 294-422 (772)
154 PRK09856 fructoselysine 3-epim 24.9 1E+02 0.0022 30.4 4.6 61 94-157 87-147 (275)
155 PF10566 Glyco_hydro_97: Glyco 24.9 1.7E+02 0.0038 29.6 6.1 61 99-172 108-168 (273)
156 PF04914 DltD_C: DltD C-termin 24.6 2.1E+02 0.0047 25.6 6.0 55 141-199 38-92 (130)
157 PRK06294 coproporphyrinogen II 24.0 3.8E+02 0.0083 28.1 8.9 94 100-211 103-199 (370)
158 PRK05628 coproporphyrinogen II 24.0 3.4E+02 0.0074 28.4 8.5 96 100-212 108-205 (375)
159 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.0 3.5E+02 0.0075 27.2 8.2 69 99-194 93-161 (275)
160 cd06598 GH31_transferase_CtsZ 23.9 2.9E+02 0.0063 28.3 7.8 110 99-211 26-168 (317)
161 KOG0470 1,4-alpha-glucan branc 23.8 78 0.0017 36.3 3.6 60 96-161 253-333 (757)
162 cd06604 GH31_glucosidase_II_Ma 23.8 4.3E+02 0.0092 27.3 9.0 68 141-211 66-163 (339)
163 PRK00694 4-hydroxy-3-methylbut 23.6 4E+02 0.0088 30.0 8.9 80 101-194 49-157 (606)
164 TIGR01232 lacD tagatose 1,6-di 23.5 4E+02 0.0086 27.8 8.4 90 102-202 111-203 (325)
165 PF04055 Radical_SAM: Radical 23.4 1.5E+02 0.0033 25.7 5.0 52 100-155 90-143 (166)
166 smart00729 Elp3 Elongator prot 23.3 3.7E+02 0.0079 24.4 7.8 54 99-157 99-155 (216)
167 PRK09936 hypothetical protein; 22.8 7.5E+02 0.016 25.4 10.0 62 98-169 39-100 (296)
168 PRK13209 L-xylulose 5-phosphat 22.8 6.4E+02 0.014 24.8 9.9 52 99-156 23-74 (283)
169 PTZ00445 p36-lilke protein; Pr 22.6 1.4E+02 0.003 29.3 4.6 56 103-160 35-99 (219)
170 PRK09249 coproporphyrinogen II 22.6 2.8E+02 0.006 30.0 7.6 63 99-166 150-214 (453)
171 TIGR02351 thiH thiazole biosyn 22.5 5.3E+02 0.011 27.1 9.5 98 97-209 159-260 (366)
172 cd06599 GH31_glycosidase_Aec37 22.1 3.3E+02 0.0072 27.9 7.8 69 141-210 75-171 (317)
173 PF01261 AP_endonuc_2: Xylose 22.0 68 0.0015 29.7 2.5 63 94-157 68-130 (213)
174 cd00927 Cyt_c_Oxidase_VIc Cyto 22.0 48 0.001 26.5 1.1 19 93-111 46-66 (70)
175 PRK05904 coproporphyrinogen II 21.5 4E+02 0.0087 27.9 8.3 93 100-209 103-197 (353)
176 PRK08208 coproporphyrinogen II 21.3 2.9E+02 0.0063 29.7 7.4 61 100-166 141-204 (430)
177 cd07938 DRE_TIM_HMGL 3-hydroxy 21.3 7.4E+02 0.016 24.8 10.0 91 96-207 113-203 (274)
178 TIGR00542 hxl6Piso_put hexulos 21.3 1.6E+02 0.0035 29.2 5.2 61 95-158 92-152 (279)
179 COG1649 Uncharacterized protei 21.2 2.4E+02 0.0053 30.4 6.6 94 97-195 64-198 (418)
180 PRK01060 endonuclease IV; Prov 21.2 4.8E+02 0.01 25.7 8.6 50 99-155 14-63 (281)
181 PLN02925 4-hydroxy-3-methylbut 21.1 2.7E+02 0.0059 32.0 7.1 53 140-193 211-263 (733)
182 PRK05660 HemN family oxidoredu 20.9 3.7E+02 0.008 28.3 8.0 94 100-210 107-202 (378)
183 PRK08446 coproporphyrinogen II 20.7 4E+02 0.0088 27.7 8.2 92 100-209 98-192 (350)
184 COG5016 Pyruvate/oxaloacetate 20.3 3.3E+02 0.0071 29.4 7.1 72 96-194 92-168 (472)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.4e-141 Score=1103.18 Aligned_cols=477 Identities=64% Similarity=1.148 Sum_probs=440.9
Q ss_pred CCCcccCCCCCCCeeeeecccccccCccCCCCCcCcccccccccCCCcccCCCCCCcCCchhhchHHHHHHHHHcCCCee
Q 036948 35 TAFFNRTSFPPGFIFGTASSAYQYEGAATEGGRGPSLWDTYTHRHPDKIKDGSNGDVAVDSYHRYKEDVRIIKEMNLDAY 114 (514)
Q Consensus 35 ~~~~~~~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~lm~~lG~~~~ 114 (514)
+..+.+..||++|+||+||||||+|||+++|||++|+||+|+|..|+++.+++++|+|||+||||+|||+|||+||+++|
T Consensus 29 ~~~~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~af 108 (524)
T KOG0626|consen 29 TTKFSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAF 108 (524)
T ss_pred cCcccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeE
Confidence 34677899999999999999999999999999999999999998777777888899999999999999999999999999
Q ss_pred eecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHH
Q 036948 115 RFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFRE 194 (514)
Q Consensus 115 R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~ 194 (514)
||||+||||+|.|...+.+|++||+||++||++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++
T Consensus 109 RFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~ 188 (524)
T KOG0626|consen 109 RFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQE 188 (524)
T ss_pred EEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHH
Confidence 99999999999995447899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcceEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEE
Q 036948 195 FGDRVKHWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLYKNTYQTTQKGKIG 274 (514)
Q Consensus 195 ~gd~v~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~r~~~~~~~~~~IG 274 (514)
||||||+|+|||||++++..||..|..|||+++... .+|+.++|++++|.|+||||+|||+||++||+.++..|+|+||
T Consensus 189 fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~-~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IG 267 (524)
T KOG0626|consen 189 FGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYV-GNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIG 267 (524)
T ss_pred hcccceeeEEecccceeeeehhccCCCCCCCCCccc-ccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEe
Confidence 999999999999999999999999999999999876 8999999999999999999999999999999999888999999
Q ss_pred EEeeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhhcCCCCChhhHHhhcCCccEEEeeccccee
Q 036948 275 ITLVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVADRLPKFSKEQSEMLEGSFDFLGLNYYTSSY 354 (514)
Q Consensus 275 i~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNyYts~~ 354 (514)
|+++..|++|.+++++|.+||+|+.+|..+||++|++.|+||+.|++.+++|||.||++|.+++||+.||+|||||++.+
T Consensus 268 i~~~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~ 347 (524)
T KOG0626|consen 268 IALSARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRY 347 (524)
T ss_pred EEEeeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhh
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred EecCcccc-cCCCCCccccccccccccCC-cccCCCCCCCCcccChHHHHHHHHHHHHHhCCCeEEEeecCccCCCCCcc
Q 036948 355 VAYAPQLR-SATKSCLTDAIANLLSERNG-VLIGPKAASDWLYVYPRGIWDLLLYIKRKYNNPLIYVTENGIDEVNDPKL 432 (514)
Q Consensus 355 v~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~ 432 (514)
|++...+. ...+.+..|..+.. ..++ .+.+..+...|..++|+||+++|++++++|++|||||||||+++.+....
T Consensus 348 ~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~ 425 (524)
T KOG0626|consen 348 VKHLKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTK 425 (524)
T ss_pred hhccCCCCCCCCcccccccceee--eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCccccccc
Confidence 99865422 22333444444333 1222 34556677889899999999999999999999999999999999765444
Q ss_pred CcccccChhhhHHHHHHHHHHHHHHHH-cCCCEEEEeeccccccccccCCCCCceeEEEEcCCCCccccccchHHHHHHH
Q 036948 433 TLEEALVDNMRIDYYYRHLYFLQKAIR-YGVKVKGYFAWSLLDNFEWSAGYTVRFGINYVDYKDGLKRYPKLSARWFKKF 511 (514)
Q Consensus 433 ~~~~~i~D~~Ri~yl~~hl~~l~~Ai~-dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~i 511 (514)
+....++|+.||+|++.||++|++||. +||||+|||+|||||||||..||+.|||||+|||+|.++|+||.|+.||+++
T Consensus 426 ~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~dgvnv~GYf~WSLmDnfEw~~Gy~~RFGlyyVDf~d~l~R~pK~Sa~wy~~f 505 (524)
T KOG0626|consen 426 SLEVALKDTKRIEYLQNHLQAVLKAIKEDGVNVKGYFVWSLLDNFEWLDGYKVRFGLYYVDFKDPLKRYPKLSAKWYKKF 505 (524)
T ss_pred chhhhhcchHHHHHHHHHHHHHHHHHHhcCCceeeEEEeEcccchhhhcCcccccccEEEeCCCCCcCCchhHHHHHHHH
Confidence 455678999999999999999999996 9999999999999999999999999999999999977999999999999999
Q ss_pred hcC
Q 036948 512 LKR 514 (514)
Q Consensus 512 i~~ 514 (514)
|++
T Consensus 506 l~~ 508 (524)
T KOG0626|consen 506 LKG 508 (524)
T ss_pred HcC
Confidence 974
No 2
>PLN02998 beta-glucosidase
Probab=100.00 E-value=2e-132 Score=1067.13 Aligned_cols=484 Identities=46% Similarity=0.882 Sum_probs=418.7
Q ss_pred CccchhhHHHHHHHhhccccchhhHhhhhccCCCCCCcccCCCCCCCeeeeecccccccCccCCCCCcCcccccccccCC
Q 036948 1 MAIQTNSLFALLILLGSASISNFVAAAKITNNYDTAFFNRTSFPPGFIFGTASSAYQYEGAATEGGRGPSLWDTYTHRHP 80 (514)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~Wd~~~~~~~ 80 (514)
|.+-.|||..|-+|. .| + .-|....+.+.+||++|+||+|||||||||++++||||+|+||.|++ +
T Consensus 1 ~~~~~~~~~~~~~~~-~~----------~-~~~~~~~~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~--~ 66 (497)
T PLN02998 1 MKLLSNSLMFLPLLA-LA----------L-TAVSSLKYSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH--A 66 (497)
T ss_pred CcchhcchhHHHHHH-hc----------c-cccccccCccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc--c
Confidence 456678876554331 11 1 12444557788999999999999999999999999999999999987 3
Q ss_pred CcccCCCCCCcCCchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEec
Q 036948 81 DKIKDGSNGDVAVDSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLF 160 (514)
Q Consensus 81 ~~~~~~~~~~~a~d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 160 (514)
+. .+..++++||||||||+|||+|||+||+++|||||+||||+|+| .|.+|++||+||+++|++|+++||+|+|||+
T Consensus 67 ~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G--~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~ 143 (497)
T PLN02998 67 GH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSISWSRLLPSG--RGPINPKGLQYYNNLIDELITHGIQPHVTLH 143 (497)
T ss_pred Cc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCC--CCCcCHHHHHHHHHHHHHHHHcCCceEEEec
Confidence 42 22247889999999999999999999999999999999999998 4889999999999999999999999999999
Q ss_pred cCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcceEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCC
Q 036948 161 HWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFREFGDRVKHWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSG 240 (514)
Q Consensus 161 h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~ 240 (514)
|||+|+||+++||||+|++++++|++||+.|+++|||+|++|+|||||++++..||..|.+|||.++......|+.+++.
T Consensus 144 H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~ 223 (497)
T PLN02998 144 HFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSS 223 (497)
T ss_pred CCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEccCcchhhhcchhhcccCCCccccccccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999996442212236665666
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEeeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhH
Q 036948 241 VEPYLVAHHHLLAHAAAVHLYKNTYQTTQKGKIGITLVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQ 320 (514)
Q Consensus 241 ~~~~~~~h~~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~ 320 (514)
+..++|+||+++|||+||++||+.++..++++||++++..+++|.+++|+|++||++.+++.++||+||++.|+||+.|+
T Consensus 224 ~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~ 303 (497)
T PLN02998 224 IEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYTYGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMK 303 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeCCeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHH
Confidence 77899999999999999999999865557899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCChhhHHhhcCCccEEEeecccceeEecCccc-ccCCCCCccccccccccccCCcccCCCC-CCCCcccCh
Q 036948 321 SLVADRLPKFSKEQSEMLEGSFDFLGLNYYTSSYVAYAPQL-RSATKSCLTDAIANLLSERNGVLIGPKA-ASDWLYVYP 398 (514)
Q Consensus 321 ~~l~~~lp~ft~ed~~~ikg~~DFiGiNyYts~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t-~~~w~~i~P 398 (514)
+.+++++|.|+++|+++|++++||||||||++.+|+..... ......+..+..... .+.++.+ .++|+ |+|
T Consensus 304 ~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~w~-i~P 376 (497)
T PLN02998 304 TNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNSSSLKPNLQDFNTDIAVEM------TLVGNTSIENEYA-NTP 376 (497)
T ss_pred HHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCCCcCCCCcccccccccccc------ccCCCcCCCCCCE-ECh
Confidence 99998999999999999999999999999999999753211 000011101100000 0111233 47885 999
Q ss_pred HHHHHHHHHHHHHhCCCeEEEeecCccCCCCCccCcccccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccc
Q 036948 399 RGIWDLLLYIKRKYNNPLIYVTENGIDEVNDPKLTLEEALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEW 478 (514)
Q Consensus 399 ~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW 478 (514)
+||+.+|+++++||++|||||||||+++.+ +|+++|++||+||++||++|++||+|||||+||++|||+|||||
T Consensus 377 ~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~------~g~v~D~~Ri~Yl~~hl~~~~kAi~dGv~V~GY~~WSl~DnfEW 450 (497)
T PLN02998 377 WSLQQILLYVKETYGNPPVYILENGQMTPH------SSSLVDTTRVKYLSSYIKAVLHSLRKGSDVKGYFQWSLMDVFEL 450 (497)
T ss_pred HHHHHHHHHHHHHcCCCCEEEeCCCCccCC------CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhch
Confidence 999999999999999988999999998753 36789999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEcCCC-CccccccchHHHHHHHhcC
Q 036948 479 SAGYTVRFGINYVDYKD-GLKRYPKLSARWFKKFLKR 514 (514)
Q Consensus 479 ~~Gy~~rfGL~~VD~~~-~~~R~pK~S~~~y~~ii~~ 514 (514)
.+||++|||||+|||++ +++|+||+|++||+++|+.
T Consensus 451 ~~Gy~~RfGLv~VD~~~~~~~R~pK~S~~wy~~ii~~ 487 (497)
T PLN02998 451 FGGYERSFGLLYVDFKDPSLKRSPKLSAHWYSSFLKG 487 (497)
T ss_pred hccccCccceEEECCCCCCcceecccHHHHHHHHHhc
Confidence 99999999999999985 5799999999999999973
No 3
>PLN02849 beta-glucosidase
Probab=100.00 E-value=2.4e-132 Score=1067.93 Aligned_cols=474 Identities=47% Similarity=0.866 Sum_probs=417.7
Q ss_pred hhHHHHHHHhhccccchhhHhhhhccCCCCCCcccCCCCCCCeeeeecccccccCccCCCCCcCcccccccccCCCcccC
Q 036948 6 NSLFALLILLGSASISNFVAAAKITNNYDTAFFNRTSFPPGFIFGTASSAYQYEGAATEGGRGPSLWDTYTHRHPDKIKD 85 (514)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~Wd~~~~~~~~~~~~ 85 (514)
-|||...+|||-.|-. . ..++++.+||++|+||+|||||||||++++||||+|+||.|++. + +
T Consensus 5 ~~~~~~~~~~~~~~~~-------~-----~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~-~----~ 67 (503)
T PLN02849 5 LSLFTIFLLLALSSGK-------C-----SSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHS-R----N 67 (503)
T ss_pred HHHHHHHHHHhccccc-------c-----cCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeecc-C----C
Confidence 3777777777754421 1 34567788999999999999999999999999999999999875 3 3
Q ss_pred CCCCCcCCchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCc
Q 036948 86 GSNGDVAVDSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTP 165 (514)
Q Consensus 86 ~~~~~~a~d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P 165 (514)
+.++++||||||||+|||+|||+||+++|||||+||||+|+| .|.+|++||+||+++|++|+++||+|+|||+|||+|
T Consensus 68 ~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G--~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP 145 (503)
T PLN02849 68 MSNGDIACDGYHKYKEDVKLMVETGLDAFRFSISWSRLIPNG--RGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHP 145 (503)
T ss_pred CCCCCccccHHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCC--CCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCc
Confidence 457889999999999999999999999999999999999998 489999999999999999999999999999999999
Q ss_pred hhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcceEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCchhHH
Q 036948 166 QALEDEYGGFLSPRIVNDFRDYAQVCFREFGDRVKHWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVEPYL 245 (514)
Q Consensus 166 ~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~ 245 (514)
+||+++||||+|++++++|++||+.|+++|||+|++|+|||||++++..||..|.+|||.+.... ..|+.+++.++.++
T Consensus 146 ~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~-~~~~~~~~~~~~~~ 224 (503)
T PLN02849 146 QYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTTINEANIFTIGGYNDGITPPGRCSSPG-RNCSSGNSSTEPYI 224 (503)
T ss_pred HHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEEecchhhhhhchhhhccCCCCcccccc-ccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999643110 12444445567899
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCceEEEEeeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhh
Q 036948 246 VAHHHLLAHAAAVHLYKNTYQTTQKGKIGITLVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVAD 325 (514)
Q Consensus 246 ~~h~~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~ 325 (514)
|+||+++|||+||++||+.++..++++||++++..+++|.+++|+|++||++++++.++||+||++.|+||+.|++.+++
T Consensus 225 a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~ 304 (503)
T PLN02849 225 VGHNLLLAHASVSRLYKQKYKDMQGGSIGFSLFALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGS 304 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhc
Confidence 99999999999999999976445789999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCChhhHHhhcCCccEEEeecccceeEecCcccc--cCCCCCccccccccccccCCcccCCCCCCCCcccChHHHHH
Q 036948 326 RLPKFSKEQSEMLEGSFDFLGLNYYTSSYVAYAPQLR--SATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWD 403 (514)
Q Consensus 326 ~lp~ft~ed~~~ikg~~DFiGiNyYts~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~ 403 (514)
++|.|+++|+++|++++||||||||++.+|+...... ...+.+.. ..+.+....+++||+ |+|+||+.
T Consensus 305 ~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gw~-i~P~Gl~~ 374 (503)
T PLN02849 305 RLPVFSKEESEQVKGSSDFIGVIHYLAASVTNIKIKPSLSGNPDFYS---------DMGVSLGKFSAFEYA-VAPWAMES 374 (503)
T ss_pred CCCCCCHHHHHHhcCCCCEEEEeccchhhcccCCCCCCCCCCCcccc---------ccCCCCCccCCCCCe-EChHHHHH
Confidence 9999999999999999999999999999997532110 00000100 001122345689995 99999999
Q ss_pred HHHHHHHHhCCCeEEEeecCccCCCCCccCcccccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccccCCCC
Q 036948 404 LLLYIKRKYNNPLIYVTENGIDEVNDPKLTLEEALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEWSAGYT 483 (514)
Q Consensus 404 ~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~ 483 (514)
+|+++++||++|||||||||++..++ .+++++|++||+||++||++|++||+|||||+||++|||+|||||.+||+
T Consensus 375 ~L~~~~~rY~~pPi~ITENG~~~~d~----~~~~v~D~~Ri~Yl~~hL~~l~~Ai~dGv~V~GY~~WSl~DnfEW~~Gy~ 450 (503)
T PLN02849 375 VLEYIKQSYGNPPVYILENGTPMKQD----LQLQQKDTPRIEYLHAYIGAVLKAVRNGSDTRGYFVWSFMDLYELLKGYE 450 (503)
T ss_pred HHHHHHHhcCCCCEEEeCCCCCccCC----CCCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhcccc
Confidence 99999999999889999999998753 34689999999999999999999999999999999999999999999999
Q ss_pred CceeEEEEcCCC-CccccccchHHHHHHHhc
Q 036948 484 VRFGINYVDYKD-GLKRYPKLSARWFKKFLK 513 (514)
Q Consensus 484 ~rfGL~~VD~~~-~~~R~pK~S~~~y~~ii~ 513 (514)
+|||||+||+++ +++|+||+|++||+++|+
T Consensus 451 ~RfGLi~VD~~~~~~~R~pK~S~~wy~~ii~ 481 (503)
T PLN02849 451 FSFGLYSVNFSDPHRKRSPKLSAHWYSAFLK 481 (503)
T ss_pred CccceEEECCCCCCcceecccHHHHHHHHHH
Confidence 999999999985 469999999999999996
No 4
>PLN02814 beta-glucosidase
Probab=100.00 E-value=1.7e-131 Score=1061.60 Aligned_cols=456 Identities=45% Similarity=0.871 Sum_probs=405.1
Q ss_pred CcccCCCCCCCeeeeecccccccCccCCCCCcCcccccccccCCCcccCCCCCCcCCchhhchHHHHHHHHHcCCCeeee
Q 036948 37 FFNRTSFPPGFIFGTASSAYQYEGAATEGGRGPSLWDTYTHRHPDKIKDGSNGDVAVDSYHRYKEDVRIIKEMNLDAYRF 116 (514)
Q Consensus 37 ~~~~~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~lm~~lG~~~~R~ 116 (514)
+|.+.+||++|+||+|||||||||++++||||+|+||.+++. .++.++++||||||||+|||+|||+||+++|||
T Consensus 22 ~~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~-----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRf 96 (504)
T PLN02814 22 AFTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC-----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRF 96 (504)
T ss_pred ccccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec-----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEE
Confidence 466778999999999999999999999999999999999873 234688999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhC
Q 036948 117 SISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFREFG 196 (514)
Q Consensus 117 si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 196 (514)
||+||||+|+| +|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.|+++||
T Consensus 97 SIsWsRI~P~G--~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fg 174 (504)
T PLN02814 97 SISWSRLIPNG--RGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFG 174 (504)
T ss_pred eccHhhcCcCC--CCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhC
Confidence 99999999998 4899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEE
Q 036948 197 DRVKHWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLYKNTYQTTQKGKIGIT 276 (514)
Q Consensus 197 d~v~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~r~~~~~~~~~~IGi~ 276 (514)
|+|++|+|||||++++..||..|.. ||.++......|..+++.++.++|+||+++|||+||++||+.++..|+++||++
T Consensus 175 drVk~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~ 253 (504)
T PLN02814 175 EDVKLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLS 253 (504)
T ss_pred CcCCEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEE
Confidence 9999999999999999999999884 886442111235434455678999999999999999999998765688999999
Q ss_pred eeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhhcCCCCChhhHHhhcCCccEEEeecccceeEe
Q 036948 277 LVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVADRLPKFSKEQSEMLEGSFDFLGLNYYTSSYVA 356 (514)
Q Consensus 277 ~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNyYts~~v~ 356 (514)
++..+++|++++|+|++||++++++.++||+||++.|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+
T Consensus 254 ~~~~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~ 333 (504)
T PLN02814 254 IFAFGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVT 333 (504)
T ss_pred EeCceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCccccc--C-CCCCccccccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHhCCCeEEEeecCccCCCCCccC
Q 036948 357 YAPQLRS--A-TKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLYIKRKYNNPLIYVTENGIDEVNDPKLT 433 (514)
Q Consensus 357 ~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~ 433 (514)
....... . ...+..+... ...+..+.+++||+ |+|+||+.+|+++++||++|||||||||++..+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~gWe-i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~----- 401 (504)
T PLN02814 334 NRPAPSIFPSMNEGFFTDMGA------YIISAGNSSFFEFD-ATPWGLEGILEHIKQSYNNPPIYILENGMPMKH----- 401 (504)
T ss_pred cCCCCCcccccCCCccccccc------ccCCCCCcCCCCCe-ECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCC-----
Confidence 5321100 0 0000000000 00122457889996 999999999999999999988999999999753
Q ss_pred cccccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccccCCCCCceeEEEEcCCC-CccccccchHHHHHHHh
Q 036948 434 LEEALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEWSAGYTVRFGINYVDYKD-GLKRYPKLSARWFKKFL 512 (514)
Q Consensus 434 ~~~~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~-~~~R~pK~S~~~y~~ii 512 (514)
+++++|++||+||++||++|++||+|||||+||++|||+|||||.+||++|||||+|||++ +++|+||+|++||+++|
T Consensus 402 -~g~i~D~~Ri~Yl~~hl~~l~~Ai~dGv~V~GY~~WSllDnfEW~~Gy~~RfGLvyVD~~~~~~~R~pK~S~~wy~~~i 480 (504)
T PLN02814 402 -DSTLQDTPRVEFIQAYIGAVLNAIKNGSDTRGYFVWSMIDLYELLGGYTTSFGMYYVNFSDPGRKRSPKLSASWYTGFL 480 (504)
T ss_pred -CCcccCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCCCCCcceeeecHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999985 56999999999999999
Q ss_pred c
Q 036948 513 K 513 (514)
Q Consensus 513 ~ 513 (514)
+
T Consensus 481 ~ 481 (504)
T PLN02814 481 N 481 (504)
T ss_pred h
Confidence 6
No 5
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=2e-127 Score=1027.53 Aligned_cols=447 Identities=37% Similarity=0.652 Sum_probs=391.3
Q ss_pred CCCCCCCeeeeecccccccCccCCCCCcCcccccccccCCCcccCCCCCCcCCchhhchHHHHHHHHHcCCCeeeecccc
Q 036948 41 TSFPPGFIFGTASSAYQYEGAATEGGRGPSLWDTYTHRHPDKIKDGSNGDVAVDSYHRYKEDVRIIKEMNLDAYRFSISW 120 (514)
Q Consensus 41 ~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~lm~~lG~~~~R~si~W 120 (514)
.+||++|+||+|||||||||++++||||+|+||+|++. ++++ ++++||||||||+|||+|||+||+++|||||+|
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~-~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsW 77 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEE-NYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAW 77 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhccccc-CCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccH
Confidence 45999999999999999999999999999999999874 5543 689999999999999999999999999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 036948 121 SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFREFGDRVK 200 (514)
Q Consensus 121 sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~ 200 (514)
|||+|+| +|.+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|++++++|++||+.||++||| |+
T Consensus 78 sRI~P~G--~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk 153 (469)
T PRK13511 78 SRIFPDG--YGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VK 153 (469)
T ss_pred hhcCcCC--CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CC
Confidence 9999998 488999999999999999999999999999999999999987 9999999999999999999999999 99
Q ss_pred eEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEeeCc
Q 036948 201 HWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLYKNTYQTTQKGKIGITLVSS 280 (514)
Q Consensus 201 ~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~ 280 (514)
+|+|||||++++..||..|.+|||.+.. .+..++++||+++|||+||++||+.. ++++||++++..
T Consensus 154 ~W~T~NEP~~~~~~gy~~G~~~Pg~~~~-----------~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~ 219 (469)
T PRK13511 154 YWTTFNEIGPIGDGQYLVGKFPPGIKYD-----------LAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALP 219 (469)
T ss_pred EEEEccchhhhhhcchhhcccCCCCCcc-----------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCc
Confidence 9999999999999999999999996421 24689999999999999999999964 789999999999
Q ss_pred eeecCC-CCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhh------cCCCCChhhHHhhcC---CccEEEeecc
Q 036948 281 WMVPYS-SAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVAD------RLPKFSKEQSEMLEG---SFDFLGLNYY 350 (514)
Q Consensus 281 ~~~P~~-~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~------~lp~ft~ed~~~ikg---~~DFiGiNyY 350 (514)
+++|.+ ++|+|++||++++++.++||+||++.|+||+.|++.++. ..|.||++|++++++ ++||||||||
T Consensus 220 ~~~P~~~~~~~d~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyY 299 (469)
T PRK13511 220 TKYPIDPDNPEDVRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYY 299 (469)
T ss_pred eEeeCCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechh
Confidence 999999 899999999999999999999999999999999987742 124799999999974 6899999999
Q ss_pred cceeEecCccccc---CCCCCccccc--cccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHhCC-CeEEEeecCc
Q 036948 351 TSSYVAYAPQLRS---ATKSCLTDAI--ANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLYIKRKYNN-PLIYVTENGI 424 (514)
Q Consensus 351 ts~~v~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~-ppI~ITENG~ 424 (514)
++.+|+....... .......... ..........+..+.+++||+ |+|+||+.+|++++++|++ |||||||||+
T Consensus 300 t~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw~-i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~ 378 (469)
T PRK13511 300 MSDWMRAYDGETEIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDWI-IYPQGLYDQLMRIKKDYPNYKKIYITENGL 378 (469)
T ss_pred hcceeecCCCccccccCCCCccccccccccCccccccCCCCCcCCCCCe-ECcHHHHHHHHHHHHHcCCCCCEEEecCCc
Confidence 9999975321100 0000000000 000000001122356789996 9999999999999999997 6799999999
Q ss_pred cCCCCCccCcccccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccccCCCCCceeEEEEcCCCCccccccch
Q 036948 425 DEVNDPKLTLEEALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEWSAGYTVRFGINYVDYKDGLKRYPKLS 504 (514)
Q Consensus 425 ~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S 504 (514)
+..++ .+.+++++|++||+||++||++|++||+|||||+||++|||+|||||.+||++|||||+|||+ |++|+||+|
T Consensus 379 ~~~d~--~~~~~~~~D~~Ri~yl~~hl~~~~~Ai~dGv~v~GY~~WSl~DnfEW~~Gy~~RfGl~~VD~~-~~~R~pK~S 455 (469)
T PRK13511 379 GYKDE--FVDGKTVDDDKRIDYVKQHLEVISDAISDGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFE-TQERYPKKS 455 (469)
T ss_pred CCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecccccccchhcCccCccceEEECCC-cCccccccH
Confidence 97653 234568999999999999999999999999999999999999999999999999999999998 899999999
Q ss_pred HHHHHHHhcC
Q 036948 505 ARWFKKFLKR 514 (514)
Q Consensus 505 ~~~y~~ii~~ 514 (514)
++||+++|+.
T Consensus 456 ~~wy~~~i~~ 465 (469)
T PRK13511 456 AYWYKKLAET 465 (469)
T ss_pred HHHHHHHHHh
Confidence 9999999973
No 6
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.7e-128 Score=999.45 Aligned_cols=444 Identities=41% Similarity=0.758 Sum_probs=399.9
Q ss_pred CCCCCCCeeeeecccccccCccCCCCCcCcccccccccC-CCcccCCCCCCcCCchhhchHHHHHHHHHcCCCeeeeccc
Q 036948 41 TSFPPGFIFGTASSAYQYEGAATEGGRGPSLWDTYTHRH-PDKIKDGSNGDVAVDSYHRYKEDVRIIKEMNLDAYRFSIS 119 (514)
Q Consensus 41 ~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~Wd~~~~~~-~~~~~~~~~~~~a~d~y~~~~eDi~lm~~lG~~~~R~si~ 119 (514)
.+||++|+||+||||+|+||++++||||+|+||.|++.. |+.+..+.++++||||||||+|||+||||||+++|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 479999999999999999999999999999999999953 6777778899999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCc
Q 036948 120 WSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFREFGDRV 199 (514)
Q Consensus 120 Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v 199 (514)
||||+|+++ .+.+|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.||++|||+|
T Consensus 82 WsRIfP~g~-~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkV 160 (460)
T COG2723 82 WSRIFPNGD-GGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKV 160 (460)
T ss_pred EEEeecCCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999984 2389999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEeeC
Q 036948 200 KHWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLYKNTYQTTQKGKIGITLVS 279 (514)
Q Consensus 200 ~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~ 279 (514)
++|+||||||+++..||+.|.+||+..+ .+..+||+||+++|||+|++++|+.. ++.+||++++.
T Consensus 161 k~W~TFNE~n~~~~~~y~~~~~~p~~~~------------~~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~ 225 (460)
T COG2723 161 KYWFTFNEPNVVVELGYLYGGHPPGIVD------------PKAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNL 225 (460)
T ss_pred eEEEEecchhhhhcccccccccCCCccC------------HHHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEecc
Confidence 9999999999999999999999999765 36889999999999999999999975 34499999999
Q ss_pred ceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhhc--CCCCChhhHHhhcC-CccEEEeecccc-eeE
Q 036948 280 SWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVADR--LPKFSKEQSEMLEG-SFDFLGLNYYTS-SYV 355 (514)
Q Consensus 280 ~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~--lp~ft~ed~~~ikg-~~DFiGiNyYts-~~v 355 (514)
.+.||.+++|+|+.||+.++++.+.+|+||+++|.||..+.+.+++. +|.++++|+++||. ++||||+|||++ .++
T Consensus 226 ~p~YP~s~~p~dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~ 305 (460)
T COG2723 226 TPAYPLSDKPEDVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVK 305 (460)
T ss_pred CcCCCCCCCHHHHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEe
Confidence 99999999999999999999999999999999999999999998764 79999999999986 589999999994 444
Q ss_pred ecCcccccCCCCCccccccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHhCCCeEEEeecCccCCCCCccCcc
Q 036948 356 AYAPQLRSATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLYIKRKYNNPLIYVTENGIDEVNDPKLTLE 435 (514)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~ 435 (514)
+...... ..+...... ....+|..+.+++||+ |+|+||+.+|+++++||+ +||||||||++..++ ...
T Consensus 306 ~~~~~~~---~~~~~~~~~----~~~~~p~~~~sdwGWe-I~P~GL~~~l~~~~~rY~-~p~fItENG~G~~d~--~~~- 373 (460)
T COG2723 306 AAEPRYV---SGYGPGGFF----TSVPNPGLEVSDWGWE-IYPKGLYDILEKLYERYG-IPLFITENGLGVKDE--VDF- 373 (460)
T ss_pred eccCCcC---Ccccccccc----cccCCCCCcccCCCce-eChHHHHHHHHHHHHHhC-CCeEEecCCCCcccc--ccc-
Confidence 4332210 111111101 1111355678899996 999999999999999999 569999999998875 222
Q ss_pred cccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccccCCCCCceeEEEEcCCCC-ccccccchHHHHHHHhc
Q 036948 436 EALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEWSAGYTVRFGINYVDYKDG-LKRYPKLSARWFKKFLK 513 (514)
Q Consensus 436 ~~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~-~~R~pK~S~~~y~~ii~ 513 (514)
+.|+|++||+||++||.+|++||+|||+|+||++||++||+||++||++||||++||++ | ++|+||+|++|||+||+
T Consensus 374 ~~i~DdyRI~Yl~~Hl~~v~~AI~dGv~v~GY~~Ws~iD~~sw~~gy~kRYGli~VD~~-~~~~R~~KkS~~WyK~vi~ 451 (460)
T COG2723 374 DGINDDYRIDYLKEHLKAVKKAIEDGVDVRGYFAWSLIDNYSWANGYKKRYGLVYVDYD-TDLERTPKKSFYWYKEVIE 451 (460)
T ss_pred CCcCchHHHHHHHHHHHHHHHHHHcCCCcccceecccccccchhhccccccccEEEccc-ccceeeecCceeeeHHHHh
Confidence 33999999999999999999999999999999999999999999999999999999998 6 79999999999999986
No 7
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=2.9e-127 Score=1024.20 Aligned_cols=444 Identities=36% Similarity=0.654 Sum_probs=390.3
Q ss_pred CCCCCCCeeeeecccccccCccCCCCCcCcccccccccCCCcccCCCCCCcCCchhhchHHHHHHHHHcCCCeeeecccc
Q 036948 41 TSFPPGFIFGTASSAYQYEGAATEGGRGPSLWDTYTHRHPDKIKDGSNGDVAVDSYHRYKEDVRIIKEMNLDAYRFSISW 120 (514)
Q Consensus 41 ~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~lm~~lG~~~~R~si~W 120 (514)
.+||++|+||+|||||||||+++++|||+|+||.+++. +++ .++++||||||||+|||+|||+||+++|||||+|
T Consensus 2 ~~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~-~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsW 76 (467)
T TIGR01233 2 KTLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLED-NYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAW 76 (467)
T ss_pred CCCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccC-CCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecch
Confidence 35999999999999999999999999999999998874 544 2578999999999999999999999999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 036948 121 SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFREFGDRVK 200 (514)
Q Consensus 121 sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~ 200 (514)
|||+|+| .|.+|++||+||++||++|+++||+|+|||+|||+|+||+++ |||+|++++++|++||+.||++||+ |+
T Consensus 77 sRI~P~g--~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk 152 (467)
T TIGR01233 77 SRIFPTG--YGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VN 152 (467)
T ss_pred hhccCCC--CCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CC
Confidence 9999998 489999999999999999999999999999999999999987 9999999999999999999999998 99
Q ss_pred eEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEeeCc
Q 036948 201 HWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLYKNTYQTTQKGKIGITLVSS 280 (514)
Q Consensus 201 ~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~ 280 (514)
+|+|||||++++..||+.|.+|||... +.++.++++||+++|||+||++||+.. ++++||++++..
T Consensus 153 ~WiT~NEP~~~~~~gy~~G~~~Pg~~~-----------~~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~ 218 (467)
T TIGR01233 153 YWTTFNEIGPIGDGQYLVGKFPPGIKY-----------DLAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALP 218 (467)
T ss_pred EEEEecchhhhhhccchhcccCCCccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCc
Confidence 999999999999999999999999532 124689999999999999999999974 789999999999
Q ss_pred eeecCC-CCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhhc------CCCCChhhHHhh---cCCccEEEeecc
Q 036948 281 WMVPYS-SAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVADR------LPKFSKEQSEML---EGSFDFLGLNYY 350 (514)
Q Consensus 281 ~~~P~~-~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~------lp~ft~ed~~~i---kg~~DFiGiNyY 350 (514)
+++|.+ ++|+|++||++++++.++||+||+++|+||+.|++.++.+ +|.||++|+++| ++++||||||||
T Consensus 219 ~~~P~~~~~~~D~~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyY 298 (467)
T TIGR01233 219 TKYPYDPENPADVRAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYY 298 (467)
T ss_pred eeEECCCCCHHHHHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccc
Confidence 999998 7999999999999998999999999999999999987632 377999999999 589999999999
Q ss_pred cceeEecCccccc---CCC-CCcccc-ccccccccCCcc-cCCCCCCCCcccChHHHHHHHHHHHHHhCC-CeEEEeecC
Q 036948 351 TSSYVAYAPQLRS---ATK-SCLTDA-IANLLSERNGVL-IGPKAASDWLYVYPRGIWDLLLYIKRKYNN-PLIYVTENG 423 (514)
Q Consensus 351 ts~~v~~~~~~~~---~~~-~~~~~~-~~~~~~~~~~~~-~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~-ppI~ITENG 423 (514)
++.+|+....... ... ...... ...... ....+ ..+.+++||+ |+|+||+.+|+++++||++ |||||||||
T Consensus 299 t~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~gw~-i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG 376 (467)
T TIGR01233 299 MSDWMQAFDGETEIIHNGKGEKGSSKYQIKGVG-RRVAPDYVPRTDWDWI-IYPEGLYDQIMRVKNDYPNYKKIYITENG 376 (467)
T ss_pred cceeeccCCCccccccCCccccCcccccCCCcc-cccCCCCCCcCCCCCe-eChHHHHHHHHHHHHHcCCCCCEEEeCCC
Confidence 9999975311100 000 000000 000000 00011 2256789996 9999999999999999997 679999999
Q ss_pred ccCCCCCccCcccccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccccCCCCCceeEEEEcCCCCccccccc
Q 036948 424 IDEVNDPKLTLEEALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEWSAGYTVRFGINYVDYKDGLKRYPKL 503 (514)
Q Consensus 424 ~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~ 503 (514)
++..++. .+|.++|++||+||++||++|++||+|||||+||++|||+|||||.+||++|||||+||++ |++|+||+
T Consensus 377 ~~~~d~~---~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~v~GY~~WSl~Dn~Ew~~Gy~~RfGLv~VD~~-t~~R~~K~ 452 (467)
T TIGR01233 377 LGYKDEF---VDNTVYDDGRIDYVKQHLEVLSDAIADGANVKGYFIWSLMDVFSWSNGYEKRYGLFYVDFD-TQERYPKK 452 (467)
T ss_pred CCCCCCC---CCCccCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhchhccccCccceEEECCC-CCcccccc
Confidence 9987542 2578999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred hHHHHHHHhc
Q 036948 504 SARWFKKFLK 513 (514)
Q Consensus 504 S~~~y~~ii~ 513 (514)
|++||+++|+
T Consensus 453 S~~wy~~ii~ 462 (467)
T TIGR01233 453 SAHWYKKLAE 462 (467)
T ss_pred HHHHHHHHHH
Confidence 9999999997
No 8
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=7e-127 Score=1022.98 Aligned_cols=444 Identities=30% Similarity=0.526 Sum_probs=390.3
Q ss_pred cCCCCCCCeeeeecccccccCccCCCCCcCcccccccccCCCccc--C----------C--CCCCcCCchhhchHHHHHH
Q 036948 40 RTSFPPGFIFGTASSAYQYEGAATEGGRGPSLWDTYTHRHPDKIK--D----------G--SNGDVAVDSYHRYKEDVRI 105 (514)
Q Consensus 40 ~~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~Wd~~~~~~~~~~~--~----------~--~~~~~a~d~y~~~~eDi~l 105 (514)
..+||++|+||+|||||||||++++||||+|+||+|++. ++++. + + .++++||||||||+|||+|
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~L 81 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIG-EDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIAL 81 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccC-cCcccccccccccccccccccCCCCcccchHHhhHHHHHH
Confidence 456999999999999999999999999999999999874 55431 1 1 1578999999999999999
Q ss_pred HHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHH
Q 036948 106 IKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFR 185 (514)
Q Consensus 106 m~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~ 185 (514)
||+||+++|||||+||||+|+|+ .+.+|++||+||++||++|+++||+|+|||+|||+|+||+++||||+|++++++|+
T Consensus 82 m~~lG~~aYRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~ 160 (478)
T PRK09593 82 FAEMGFKTYRMSIAWTRIFPKGD-ELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYE 160 (478)
T ss_pred HHHcCCCEEEEecchhhcccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHH
Confidence 99999999999999999999974 25699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcceEEeccCcccccccccC-CCC-CCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 036948 186 DYAQVCFREFGDRVKHWITLNEPWTYSVGGYG-DGS-LAPGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLYKN 263 (514)
Q Consensus 186 ~ya~~~~~~~gd~v~~W~t~NEp~~~~~~~y~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~r~ 263 (514)
+||+.||++|||+|++|+|||||++++..||. .|. +|||.. +..+.++|+||+++|||+||++||+
T Consensus 161 ~YA~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~------------~~~~~~~a~h~~llAHa~A~~~~~~ 228 (478)
T PRK09593 161 RLCRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN------------KEQVKYQAAHHELVASAIATKIAHE 228 (478)
T ss_pred HHHHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc------------hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888876 454 367642 1246899999999999999999998
Q ss_pred hccCCCCceEEEEeeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhh--cCCCCChhhHHhhc-C
Q 036948 264 TYQTTQKGKIGITLVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVAD--RLPKFSKEQSEMLE-G 340 (514)
Q Consensus 264 ~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~--~lp~ft~ed~~~ik-g 340 (514)
.. |+++||++++..+++|.+++|+|++||++++ +.+.||+||++.|+||+.|++.+++ .+|.||++|+++|+ +
T Consensus 229 ~~---~~g~VGi~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g 304 (478)
T PRK09593 229 VD---PENKVGCMLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKEN 304 (478)
T ss_pred hC---CCCeEEEEEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcC
Confidence 64 7899999999999999999999999999887 4578999999999999999999975 46889999999996 8
Q ss_pred CccEEEeecccceeEecCcccccCCCCCccccccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHhCCCeEEEe
Q 036948 341 SFDFLGLNYYTSSYVAYAPQLRSATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLYIKRKYNNPLIYVT 420 (514)
Q Consensus 341 ~~DFiGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~IT 420 (514)
++||||||||++.+|+....... .. ...... ... .|..+.+++||+ |+|+||+.+|+++++||++| ||||
T Consensus 305 ~~DFlGiNyYt~~~v~~~~~~~~---~~-~~~~~~---~~~-~p~~~~~~~gw~-i~P~Gl~~~l~~~~~~Y~~P-i~It 374 (478)
T PRK09593 305 TVDFISFSYYSSRVASGDPKVNE---KT-AGNIFA---SLK-NPYLKASEWGWQ-IDPLGLRITLNTIWDRYQKP-MFIV 374 (478)
T ss_pred CCCEEEEecccCcccccCCCCCC---CC-CCCccc---ccc-CCCcccCCCCCE-ECHHHHHHHHHHHHHHcCCC-EEEE
Confidence 99999999999999975321100 00 000000 011 144567889996 99999999999999999986 9999
Q ss_pred ecCccCCCCCccCcccccChhhhHHHHHHHHHHHHHHHH-cCCCEEEEeeccccccccccCC-CCCceeEEEEcCCC---
Q 036948 421 ENGIDEVNDPKLTLEEALVDNMRIDYYYRHLYFLQKAIR-YGVKVKGYFAWSLLDNFEWSAG-YTVRFGINYVDYKD--- 495 (514)
Q Consensus 421 ENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai~-dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~--- 495 (514)
|||++..++ .+.+|+++|++||+||++||++|++||+ |||||+||++|||+|||||.+| |++|||||+|||++
T Consensus 375 ENG~~~~d~--~~~~g~i~D~~Ri~yl~~hl~~~~~Ai~~dGv~v~GY~~WSl~Dn~EW~~G~y~~RfGl~~VD~~~~~~ 452 (478)
T PRK09593 375 ENGLGAVDK--PDENGYVEDDYRIDYLAAHIKAMRDAINEDGVELLGYTTWGCIDLVSAGTGEMKKRYGFIYVDRDNEGK 452 (478)
T ss_pred cCCCCCCCC--CCCCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHhhcccCCCccCeeceEEECCCCCCC
Confidence 999998754 3456789999999999999999999995 9999999999999999999999 99999999999985
Q ss_pred -CccccccchHHHHHHHhc
Q 036948 496 -GLKRYPKLSARWFKKFLK 513 (514)
Q Consensus 496 -~~~R~pK~S~~~y~~ii~ 513 (514)
|++|+||+|++||+++|+
T Consensus 453 ~~~~R~pK~S~~wy~~ii~ 471 (478)
T PRK09593 453 GTLKRSKKKSFDWYKKVIA 471 (478)
T ss_pred cccceecccHHHHHHHHHH
Confidence 579999999999999996
No 9
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=5.1e-128 Score=1032.28 Aligned_cols=446 Identities=51% Similarity=0.926 Sum_probs=388.0
Q ss_pred CCCCCCCeeeeecccccccCccCCCCCcCcccccccccCCCcccCCCCCCcCCchhhchHHHHHHHHHcCCCeeeecccc
Q 036948 41 TSFPPGFIFGTASSAYQYEGAATEGGRGPSLWDTYTHRHPDKIKDGSNGDVAVDSYHRYKEDVRIIKEMNLDAYRFSISW 120 (514)
Q Consensus 41 ~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~lm~~lG~~~~R~si~W 120 (514)
.+||++|+||+|||||||||++++||||+|+||.|++. |+++.++.++++||||||||+|||+|||+||+++|||||+|
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~-~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W 81 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHE-PGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISW 81 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHS-TTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--H
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccc-cceeeccccCcccccchhhhhHHHHHHHhhccceeeeecch
Confidence 56999999999999999999999999999999999996 88888888999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 036948 121 SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFREFGDRVK 200 (514)
Q Consensus 121 sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~ 200 (514)
+||+|+|. .|.+|++|++||+++|++|+++||+|||||+|||+|+||++ +|||+|+++++.|++||+.|+++|||+|+
T Consensus 82 ~Ri~P~g~-~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~ 159 (455)
T PF00232_consen 82 SRIFPDGF-EGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVK 159 (455)
T ss_dssp HHHSTTSS-SSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBS
T ss_pred hheeeccc-ccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999972 39999999999999999999999999999999999999998 69999999999999999999999999999
Q ss_pred eEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEeeCc
Q 036948 201 HWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLYKNTYQTTQKGKIGITLVSS 280 (514)
Q Consensus 201 ~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~ 280 (514)
+|+|||||++++..||+.|.+|||..+ .++.++|+||+++||++||++||+++ ++++||++++..
T Consensus 160 ~w~T~NEp~~~~~~~y~~g~~~p~~~~------------~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~ 224 (455)
T PF00232_consen 160 YWITFNEPNVFALLGYLYGGFPPGRDS------------LKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFS 224 (455)
T ss_dssp EEEEEETHHHHHHHHHTSSSSTTCSST------------HHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEE
T ss_pred eEEeccccceeeccccccccccccccc------------cchhhHHHhhHHHHHHHHHHHHhhcc---cceEEecccccc
Confidence 999999999999999999999999654 46889999999999999999999987 899999999999
Q ss_pred eeecCCCCHHHH-HHHHHHHHHhhcccccccccccCChhhHHHHhhc--CCCCChhhHHhhcCCccEEEeecccceeEec
Q 036948 281 WMVPYSSAKHHQ-NAAERALDFMLGWFMDPLTNGNYPHTMQSLVADR--LPKFSKEQSEMLEGSFDFLGLNYYTSSYVAY 357 (514)
Q Consensus 281 ~~~P~~~~~~D~-~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~--lp~ft~ed~~~ikg~~DFiGiNyYts~~v~~ 357 (514)
+++|.++++.|. +||++.+++.++||+||++.|+||..|++.++++ +|.||++|++.|++++||||||||++.+|+.
T Consensus 225 ~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~ 304 (455)
T PF00232_consen 225 PFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRA 304 (455)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEE
T ss_pred ccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeecc
Confidence 999999987776 8999999999999999999999999999999987 9999999999999999999999999999997
Q ss_pred CcccccCCCCCccccccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHhCCCeEEEeecCccCCCCCccCcccc
Q 036948 358 APQLRSATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLYIKRKYNNPLIYVTENGIDEVNDPKLTLEEA 437 (514)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~ 437 (514)
.+..... +... ......... .+.++.++++|+ ++|+||+++|++++++|++|||||||||+++.++.. +++
T Consensus 305 ~~~~~~~-~~~~--~~~~~~~~~--~~~~~~t~~gw~-i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~---~~~ 375 (455)
T PF00232_consen 305 DPNPSSP-PSYD--SDAPFGQPY--NPGGPTTDWGWE-IYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVD---DGK 375 (455)
T ss_dssp SSSSTSS-TTHE--EEESEEEEC--ETSSEBCTTSTB-BETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCT---TSH
T ss_pred Ccccccc-cccc--CCccccccc--cccccccccCcc-cccchHhhhhhhhccccCCCcEEEeccccccccccc---ccC
Confidence 6532111 0100 000000000 234567899996 999999999999999999999999999999887522 289
Q ss_pred cChhhhHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccccCCCCCceeEEEEcCCCCccccccchHHHHHHHhc
Q 036948 438 LVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEWSAGYTVRFGINYVDYKDGLKRYPKLSARWFKKFLK 513 (514)
Q Consensus 438 i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii~ 513 (514)
++|+.||+||++||.+|++||+|||||+||++|||+|||||.+||++||||++|||.+|++|+||+|++||+++|+
T Consensus 376 v~D~~Ri~yl~~hl~~v~~Ai~dGv~V~GY~~WSl~Dn~Ew~~Gy~~rfGl~~VD~~~~~~R~pK~S~~~y~~~i~ 451 (455)
T PF00232_consen 376 VDDDYRIDYLQDHLNQVLKAIEDGVNVRGYFAWSLLDNFEWAEGYKKRFGLVYVDFFDTLKRTPKKSAYWYKDFIR 451 (455)
T ss_dssp BSHHHHHHHHHHHHHHHHHHHHTT-EEEEEEEETSB---BGGGGGGSE--SEEEETTTTTEEEEBHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhhhccCCCeeeEeeeccccccccccCccCccCceEEcCCCCcCeeeccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999545999999999999999996
No 10
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.4e-126 Score=1020.21 Aligned_cols=443 Identities=31% Similarity=0.564 Sum_probs=385.7
Q ss_pred CCCCCCeeeeecccccccCccCCCCCcCccccccc---ccCCCccc----CCC--CCCcCCchhhchHHHHHHHHHcCCC
Q 036948 42 SFPPGFIFGTASSAYQYEGAATEGGRGPSLWDTYT---HRHPDKIK----DGS--NGDVAVDSYHRYKEDVRIIKEMNLD 112 (514)
Q Consensus 42 ~fP~~FlwG~atsa~QvEG~~~~dgk~~s~Wd~~~---~~~~~~~~----~~~--~~~~a~d~y~~~~eDi~lm~~lG~~ 112 (514)
+||++|+||+|||||||||++++||||+|+||.|+ +..|+++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 32245443 222 5789999999999999999999999
Q ss_pred eeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHH
Q 036948 113 AYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCF 192 (514)
Q Consensus 113 ~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~ 192 (514)
+|||||+||||+|+|+ .+.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.||
T Consensus 83 ~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f 161 (476)
T PRK09589 83 CFRTSIAWTRIFPQGD-ELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVF 161 (476)
T ss_pred EEEeccchhhcCcCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHH
Confidence 9999999999999974 256899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcceEEeccCccccccc-----ccC-CCC-CCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 036948 193 REFGDRVKHWITLNEPWTYSVG-----GYG-DGS-LAPGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLYKNTY 265 (514)
Q Consensus 193 ~~~gd~v~~W~t~NEp~~~~~~-----~y~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~r~~~ 265 (514)
++|||+|++|+|||||++++.. ||. .|. +|||.. .....++|+||+++|||+|++++|+..
T Consensus 162 ~~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~------------~~~~~~~~~h~~llAha~A~~~~~~~~ 229 (476)
T PRK09589 162 TRYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED------------REQIMYQAAHYELVASALAVKTGHEIN 229 (476)
T ss_pred HHhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc------------hhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998766 444 343 356532 124579999999999999999999974
Q ss_pred cCCCCceEEEEeeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhhc--CCCCChhhHHhh-cCCc
Q 036948 266 QTTQKGKIGITLVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVADR--LPKFSKEQSEML-EGSF 342 (514)
Q Consensus 266 ~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~--lp~ft~ed~~~i-kg~~ 342 (514)
++++||++++..+++|.+++|+|++||++++.+ +.||+||+++|+||+.|++.++++ .|.||++|+++| ++++
T Consensus 230 ---~~~~iG~~~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~ 305 (476)
T PRK09589 230 ---PDFQIGCMIAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCV 305 (476)
T ss_pred ---CCCcEEEEEeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCC
Confidence 788999999999999999999999999998854 569999999999999999999863 478999999988 5899
Q ss_pred cEEEeecccceeEecCcccccCCCCCccccccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHhCCCeEEEeec
Q 036948 343 DFLGLNYYTSSYVAYAPQLRSATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLYIKRKYNNPLIYVTEN 422 (514)
Q Consensus 343 DFiGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITEN 422 (514)
||||||||++.+|+....... ...... ... .. .|..+.+++||+ |+|+||+.+|+++++||++| ||||||
T Consensus 306 DFlGiNyYts~~v~~~~~~~~--~~~~~~--~~~--~~--~~~~~~~~~gw~-i~P~Gl~~~L~~~~~~Y~~P-i~ItEN 375 (476)
T PRK09589 306 DYIGFSYYMSFATKFHEDNPQ--LDYVET--RDL--VS--NPYVKASEWGWQ-IDPAGLRYSLNWFWDHYQLP-LFIVEN 375 (476)
T ss_pred CEEEEecccCcccccCCCCCC--CCcccc--ccc--cc--CCCcccCCCCCc-cCcHHHHHHHHHHHHhcCCC-EEEEeC
Confidence 999999999999975211000 000000 000 01 134467889995 99999999999999999986 999999
Q ss_pred CccCCCCCccCcccccChhhhHHHHHHHHHHHHHHH-HcCCCEEEEeeccccccccccCC-CCCceeEEEEcCCC----C
Q 036948 423 GIDEVNDPKLTLEEALVDNMRIDYYYRHLYFLQKAI-RYGVKVKGYFAWSLLDNFEWSAG-YTVRFGINYVDYKD----G 496 (514)
Q Consensus 423 G~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai-~dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~----~ 496 (514)
|++..++ .+.+|+++|++||+||++||++|++|| +|||||+||++|||+|||||.+| |++|||||+|||++ |
T Consensus 376 G~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGlv~VD~~~~~~~t 453 (476)
T PRK09589 376 GFGAIDQ--READGTVNDHYRIDYLAAHIREMKKAVVEDGVDLMGYTPWGCIDLVSAGTGEMKKRYGFIYVDKDNEGKGT 453 (476)
T ss_pred CcccCCC--CCcCCcccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEeeccccccccccCCccccceeeEEEcCCCCCCcc
Confidence 9998764 345678999999999999999999999 89999999999999999999999 99999999999985 5
Q ss_pred ccccccchHHHHHHHhc
Q 036948 497 LKRYPKLSARWFKKFLK 513 (514)
Q Consensus 497 ~~R~pK~S~~~y~~ii~ 513 (514)
++|+||+|++||+++|+
T Consensus 454 ~~R~pK~S~~wy~~~i~ 470 (476)
T PRK09589 454 LERSRKKSFYWYRDVIA 470 (476)
T ss_pred cccccccHHHHHHHHHH
Confidence 79999999999999996
No 11
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=5e-126 Score=1015.17 Aligned_cols=446 Identities=30% Similarity=0.556 Sum_probs=388.4
Q ss_pred cccCCCCCCCeeeeecccccccCccCCCCCcCccccccc---ccCCCccc----CC--CCCCcCCchhhchHHHHHHHHH
Q 036948 38 FNRTSFPPGFIFGTASSAYQYEGAATEGGRGPSLWDTYT---HRHPDKIK----DG--SNGDVAVDSYHRYKEDVRIIKE 108 (514)
Q Consensus 38 ~~~~~fP~~FlwG~atsa~QvEG~~~~dgk~~s~Wd~~~---~~~~~~~~----~~--~~~~~a~d~y~~~~eDi~lm~~ 108 (514)
|++.+||++|+||+|||||||||++++||||+|+||+|+ +..|+++. ++ .++++||||||||+|||+|||+
T Consensus 1 ~~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~e 80 (477)
T PRK15014 1 MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAE 80 (477)
T ss_pred CCcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHH
Confidence 466789999999999999999999999999999999998 42245441 22 2678999999999999999999
Q ss_pred cCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHH
Q 036948 109 MNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYA 188 (514)
Q Consensus 109 lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya 188 (514)
||+++|||||+||||+|+|+ .+.+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||
T Consensus 81 lG~~~yRfSIsWsRI~P~G~-~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya 159 (477)
T PRK15014 81 MGFKCFRTSIAWTRIFPKGD-EAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFA 159 (477)
T ss_pred cCCCEEEecccceeeccCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHH
Confidence 99999999999999999974 25699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcceEEeccCcccc-----cccccCC-CCC-CCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 036948 189 QVCFREFGDRVKHWITLNEPWTY-----SVGGYGD-GSL-APGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLY 261 (514)
Q Consensus 189 ~~~~~~~gd~v~~W~t~NEp~~~-----~~~~y~~-G~~-~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~ 261 (514)
++||++|||+|++|+|||||+++ +..||.. |.+ ||+.. +....++|+||+++|||+||++|
T Consensus 160 ~~~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~------------~~~~~~~~~h~~llAHa~A~~~~ 227 (477)
T PRK15014 160 EVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHEN------------PEETMYQVLHHQFVASALAVKAA 227 (477)
T ss_pred HHHHHHhcCcCCEEEEecCcccccccccccccccccccccCCCCc------------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987 6678874 665 45421 12468999999999999999999
Q ss_pred HHhccCCCCceEEEEeeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhhcC--CCCChhhHHhh-
Q 036948 262 KNTYQTTQKGKIGITLVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVADRL--PKFSKEQSEML- 338 (514)
Q Consensus 262 r~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~l--p~ft~ed~~~i- 338 (514)
|+.. ++++||++++..+++|.+++|+|++||++++. ...+|+||+++|+||+.|++.++++. |.++++|+++|
T Consensus 228 ~~~~---~~~~IGi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~ 303 (477)
T PRK15014 228 RRIN---PEMKVGCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLR 303 (477)
T ss_pred HHhC---CCCeEEEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHh
Confidence 9975 78999999999999999999999999998763 22359999999999999999998754 78999999988
Q ss_pred cCCccEEEeecccceeEecCcccccCCCCCccccccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHhCCCeEE
Q 036948 339 EGSFDFLGLNYYTSSYVAYAPQLRSATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLYIKRKYNNPLIY 418 (514)
Q Consensus 339 kg~~DFiGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ 418 (514)
++++||||||||++.+|+.........+.+ .. ... .|..+.+++||+ |+|+||+.+|+++++||++| ||
T Consensus 304 ~~~~DFlGiNyYt~~~v~~~~~~~~~~~~~-----~~---~~~-~~~~~~~~~gw~-i~P~Gl~~~l~~~~~~Y~~P-i~ 372 (477)
T PRK15014 304 EGTCDYLGFSYYMTNAVKAEGGTGDAISGF-----EG---SVP-NPYVKASDWGWQ-IDPVGLRYALCELYERYQKP-LF 372 (477)
T ss_pred cCCCCEEEEcceeCeeeccCCCCCCCcccc-----cc---ccC-CCCcccCCCCCc-cCcHHHHHHHHHHHHhcCCC-EE
Confidence 589999999999999997532100000000 00 001 133456789996 99999999999999999986 99
Q ss_pred EeecCccCCCCCccCcccccChhhhHHHHHHHHHHHHHHHH-cCCCEEEEeeccccccccccCC-CCCceeEEEEcCCC-
Q 036948 419 VTENGIDEVNDPKLTLEEALVDNMRIDYYYRHLYFLQKAIR-YGVKVKGYFAWSLLDNFEWSAG-YTVRFGINYVDYKD- 495 (514)
Q Consensus 419 ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai~-dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~- 495 (514)
|||||++..++ .+.+|+++|++||+||++||++|++||+ |||||+||++|||+|||||.+| |++|||||+|||++
T Consensus 373 ItENG~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~l~~Ai~~dGv~v~GY~~WSl~DnfEw~~G~y~~RfGl~~VD~~~~ 450 (477)
T PRK15014 373 IVENGFGAYDK--VEEDGSINDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDD 450 (477)
T ss_pred EeCCCCCCCCC--cCcCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchhhhcccCCCccCccceEEECCCCC
Confidence 99999998654 3457889999999999999999999995 9999999999999999999999 99999999999985
Q ss_pred ---CccccccchHHHHHHHhc
Q 036948 496 ---GLKRYPKLSARWFKKFLK 513 (514)
Q Consensus 496 ---~~~R~pK~S~~~y~~ii~ 513 (514)
+++|+||+|++||+++|+
T Consensus 451 ~~~~~~R~pK~S~~wy~~ii~ 471 (477)
T PRK15014 451 GTGDMSRSRKKSFNWYKEVIA 471 (477)
T ss_pred CCcccceecccHHHHHHHHHH
Confidence 479999999999999996
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=4e-125 Score=1006.58 Aligned_cols=442 Identities=31% Similarity=0.547 Sum_probs=392.3
Q ss_pred CCCCCCeeeeecccccccCccCCCCCcCcccccccccCCCccc------------CCC--CCCcCCchhhchHHHHHHHH
Q 036948 42 SFPPGFIFGTASSAYQYEGAATEGGRGPSLWDTYTHRHPDKIK------------DGS--NGDVAVDSYHRYKEDVRIIK 107 (514)
Q Consensus 42 ~fP~~FlwG~atsa~QvEG~~~~dgk~~s~Wd~~~~~~~~~~~------------~~~--~~~~a~d~y~~~~eDi~lm~ 107 (514)
+||++|+||+|||||||||++++||||+|+||++++. |+++. ++. ++++||||||||+|||+||+
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~ 81 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHG-EHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMA 81 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccC-CCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHH
Confidence 5999999999999999999999999999999999984 56542 222 67899999999999999999
Q ss_pred HcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHH
Q 036948 108 EMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDY 187 (514)
Q Consensus 108 ~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~y 187 (514)
+||+++|||||+||||+|+++ .+.+|++|++||+++|++|+++||+|||||+|||+|+||+++||||+|++++++|++|
T Consensus 82 ~lG~~~yR~si~WsRi~P~g~-~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~y 160 (474)
T PRK09852 82 EMGFKVFRTSIAWSRLFPQGD-ELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRY 160 (474)
T ss_pred HcCCCeEEeeceeeeeeeCCC-CCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999974 2568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCcceEEeccCcccccccccC-CCC-CCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 036948 188 AQVCFREFGDRVKHWITLNEPWTYSVGGYG-DGS-LAPGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLYKNTY 265 (514)
Q Consensus 188 a~~~~~~~gd~v~~W~t~NEp~~~~~~~y~-~G~-~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~r~~~ 265 (514)
|+.|+++|||+|++|+|||||++++..||. .|. +|||... ....++|+||+++|||+||+++|+..
T Consensus 161 a~~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~------------~~~~~~~~hn~llAHa~A~~~~~~~~ 228 (474)
T PRK09852 161 ARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQ------------DQVKYQAAHHELVASALATKIAHEVN 228 (474)
T ss_pred HHHHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCCc------------hHhHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999996 664 5887421 24689999999999999999999875
Q ss_pred cCCCCceEEEEeeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhhc--CCCCChhhHHhhcCCcc
Q 036948 266 QTTQKGKIGITLVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVADR--LPKFSKEQSEMLEGSFD 343 (514)
Q Consensus 266 ~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~--lp~ft~ed~~~ikg~~D 343 (514)
++++||++++..+++|.+++|+|++||++++ +.+.||+||+++|+||+.|++.++++ +|.|+++|+++|++++|
T Consensus 229 ---~~~~IGi~~~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~D 304 (474)
T PRK09852 229 ---PQNQVGCMLAGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVD 304 (474)
T ss_pred ---CCCeEEEEEeCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCC
Confidence 6899999999999999999999999998876 55789999999999999999999864 79999999999999999
Q ss_pred EEEeecccceeEecCcccccCCCCCccccccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHhCCCeEEEeecC
Q 036948 344 FLGLNYYTSSYVAYAPQLRSATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLYIKRKYNNPLIYVTENG 423 (514)
Q Consensus 344 FiGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG 423 (514)
|||||||++.+|+....... .. ....... .. .|..+.+++||+ |+|+||+.+|+++++||++| |||||||
T Consensus 305 FlGiNyYt~~~v~~~~~~~~--~~--~~~~~~~--~~--~p~~~~~~~gw~-i~P~Gl~~~l~~~~~~Y~~P-i~ItENG 374 (474)
T PRK09852 305 FVSFSYYASRCASAEMNANN--SS--AANVVKS--LR--NPYLQVSDWGWG-IDPLGLRITMNMMYDRYQKP-LFLVENG 374 (474)
T ss_pred EEEEccccCeecccCCCCCC--CC--cCCceec--cc--CCCcccCCCCCe-eChHHHHHHHHHHHHhcCCC-EEEeCCC
Confidence 99999999999975321000 00 0000000 01 244567889995 99999999999999999986 9999999
Q ss_pred ccCCCCCccCcccccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccccCC-CCCceeEEEEcCCC----Ccc
Q 036948 424 IDEVNDPKLTLEEALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEWSAG-YTVRFGINYVDYKD----GLK 498 (514)
Q Consensus 424 ~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW~~G-y~~rfGL~~VD~~~----~~~ 498 (514)
++..++ .+.+++++|++||+||++||++|++||+|||||+||++|||+|||||.+| |++|||||+|||++ |++
T Consensus 375 ~~~~d~--~~~~g~i~D~~Ri~Yl~~hl~~~~~Ai~dGv~V~GY~~WSl~Dn~Ew~~G~y~~RfGLv~VD~~~~~~~t~~ 452 (474)
T PRK09852 375 LGAKDE--IAANGEINDDYRISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGTLT 452 (474)
T ss_pred CCCCCC--cCCCCccCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccccccCCCccceeeeEEECCCCCCCcccc
Confidence 998764 34568899999999999999999999999999999999999999999999 99999999999985 579
Q ss_pred ccccchHHHHHHHhc
Q 036948 499 RYPKLSARWFKKFLK 513 (514)
Q Consensus 499 R~pK~S~~~y~~ii~ 513 (514)
|+||+|++||+++|+
T Consensus 453 R~pK~S~~wy~~ii~ 467 (474)
T PRK09852 453 RTRKKSFWWYKKVIA 467 (474)
T ss_pred eecccHHHHHHHHHH
Confidence 999999999999996
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=5.8e-122 Score=975.48 Aligned_cols=427 Identities=48% Similarity=0.873 Sum_probs=392.0
Q ss_pred CCCCCeeeeecccccccCccCCCCCcCcccccccccCCCcccCCCCCCcCCchhhchHHHHHHHHHcCCCeeeecccccc
Q 036948 43 FPPGFIFGTASSAYQYEGAATEGGRGPSLWDTYTHRHPDKIKDGSNGDVAVDSYHRYKEDVRIIKEMNLDAYRFSISWSR 122 (514)
Q Consensus 43 fP~~FlwG~atsa~QvEG~~~~dgk~~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~lm~~lG~~~~R~si~Wsr 122 (514)
||++|+||+|||||||||+++++|||+|+||.+++. |+++.++.++++||||||+|+|||+|||+||+++|||||+|||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~-~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsr 79 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHT-PGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPR 79 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccC-CCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhh
Confidence 899999999999999999999999999999999885 7777666788999999999999999999999999999999999
Q ss_pred cccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcceE
Q 036948 123 ILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFREFGDRVKHW 202 (514)
Q Consensus 123 i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~W 202 (514)
|+|+| .|.+|+++++||+++|++|+++||+|||||+|||+|+||+++ |||.|+++++.|++||+.|+++||++|++|
T Consensus 80 i~p~g--~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w 156 (427)
T TIGR03356 80 IFPEG--TGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHW 156 (427)
T ss_pred cccCC--CCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEE
Confidence 99997 388999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred EeccCcccccccccCCCCCCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEeeCcee
Q 036948 203 ITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLYKNTYQTTQKGKIGITLVSSWM 282 (514)
Q Consensus 203 ~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~ 282 (514)
+|+|||++++..||..|.+||+.++ ....++++||+++|||+|+++||++. ++++||++++..++
T Consensus 157 ~t~NEp~~~~~~~y~~G~~~P~~~~------------~~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~ 221 (427)
T TIGR03356 157 ITLNEPWCSAFLGYGLGVHAPGLRD------------LRAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPV 221 (427)
T ss_pred EEecCcceecccchhhccCCCCCcc------------HHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCee
Confidence 9999999999999999999998542 13579999999999999999999975 78999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhhcCCCCChhhHHhhcCCccEEEeecccceeEecCcccc
Q 036948 283 VPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVADRLPKFSKEQSEMLEGSFDFLGLNYYTSSYVAYAPQLR 362 (514)
Q Consensus 283 ~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNyYts~~v~~~~~~~ 362 (514)
+|.+++|+|+.||++++++.++||+||++.|+||+.|++.++ .+|.||++|++++++++||||||||++.+|+......
T Consensus 222 ~P~~~~~~d~~aa~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~ 300 (427)
T TIGR03356 222 YPASDSPEDVAAARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG 300 (427)
T ss_pred eeCCCCHHHHHHHHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC
Confidence 999999999999999999999999999999999999999997 4799999999999999999999999999997532100
Q ss_pred cCCCCCccccccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHhCCCeEEEeecCccCCCCCccCcccccChhh
Q 036948 363 SATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLYIKRKYNNPLIYVTENGIDEVNDPKLTLEEALVDNM 442 (514)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~ 442 (514)
... . .. .+..+.+++||+ |+|+||+.+|+++++||++|||||||||++..++ .+ +|+++|++
T Consensus 301 ---~~~-----~----~~--~~~~~~~~~gw~-i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~--~~-~g~~~D~~ 362 (427)
T TIGR03356 301 ---AGF-----V----EV--PEGVPKTAMGWE-VYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDE--VT-DGEVHDPE 362 (427)
T ss_pred ---CCc-----c----cc--CCCCCcCCCCCe-echHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCC--Cc-CCCcCCHH
Confidence 000 0 00 122356789995 9999999999999999999889999999998654 23 67899999
Q ss_pred hHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccccCCCCCceeEEEEcCCCCccccccchHHHH
Q 036948 443 RIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEWSAGYTVRFGINYVDYKDGLKRYPKLSARWF 508 (514)
Q Consensus 443 Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y 508 (514)
||+||++||++|++||+|||||+||++|||+|||||.+||++|||||+||++ |++|+||+|++||
T Consensus 363 Ri~yl~~hl~~~~~Ai~dGv~v~GY~~Wsl~Dn~ew~~gy~~rfGl~~VD~~-~~~R~~K~S~~wy 427 (427)
T TIGR03356 363 RIAYLRDHLAALARAIEEGVDVRGYFVWSLLDNFEWAEGYSKRFGLVHVDYE-TQKRTPKDSAKWY 427 (427)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEecccccccchhcccccccceEEECCC-CCcccccceeeeC
Confidence 9999999999999999999999999999999999999999999999999998 8999999999997
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.63 E-value=6.2e-14 Score=139.81 Aligned_cols=250 Identities=16% Similarity=0.163 Sum_probs=161.2
Q ss_pred cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCcc--EEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhC
Q 036948 119 SWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQP--FVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFREFG 196 (514)
Q Consensus 119 ~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p--~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 196 (514)
.|++++|++ |++|+ +..|.+++.++++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||+
T Consensus 2 kW~~~ep~~---G~~n~---~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~-~---~~~~~~~~~~~i~~v~~ry~ 71 (254)
T smart00633 2 KWDSTEPSR---GQFNF---SGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL-S---KETLLARLENHIKTVVGRYK 71 (254)
T ss_pred CcccccCCC---CccCh---HHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC-C---HHHHHHHHHHHHHHHHHHhC
Confidence 599999998 99999 55778999999999994 4456788999998742 2 46788999999999999999
Q ss_pred CCcceEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEE
Q 036948 197 DRVKHWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLYKNTYQTTQKGKIGIT 276 (514)
Q Consensus 197 d~v~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~r~~~~~~~~~~IGi~ 276 (514)
++|..|.++|||...... |.+. ...+++.-.-+ -..|.++.|+.. |++++-+.
T Consensus 72 g~i~~wdV~NE~~~~~~~---------~~~~-------------~~w~~~~G~~~--i~~af~~ar~~~---P~a~l~~N 124 (254)
T smart00633 72 GKIYAWDVVNEALHDNGS---------GLRR-------------SVWYQILGEDY--IEKAFRYAREAD---PDAKLFYN 124 (254)
T ss_pred CcceEEEEeeecccCCCc---------cccc-------------chHHHhcChHH--HHHHHHHHHHhC---CCCEEEEe
Confidence 999999999999853111 1110 00111110001 124666667765 66666432
Q ss_pred eeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhhcCCCCChhhHHhhcCCccEEEeecccceeEe
Q 036948 277 LVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVADRLPKFSKEQSEMLEGSFDFLGLNYYTSSYVA 356 (514)
Q Consensus 277 ~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNyYts~~v~ 356 (514)
......+ . .. ......+ .+.+ ..-..++|-||++....
T Consensus 125 -dy~~~~~---~-~k---~~~~~~~------------------v~~l------------~~~g~~iDgiGlQ~H~~---- 162 (254)
T smart00633 125 -DYNTEEP---N-AK---RQAIYEL------------------VKKL------------KAKGVPIDGIGLQSHLS---- 162 (254)
T ss_pred -ccCCcCc---c-HH---HHHHHHH------------------HHHH------------HHCCCccceeeeeeeec----
Confidence 1111111 0 00 0111111 1111 11123579999953210
Q ss_pred cCcccccCCCCCccccccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHhCCCeEEEeecCccCCCCCccCccc
Q 036948 357 YAPQLRSATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLYIKRKYNNPLIYVTENGIDEVNDPKLTLEE 436 (514)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~ 436 (514)
. . ...|..|...|..+.+. +.| |+|||.++...+.
T Consensus 163 ~-~-----------------------------------~~~~~~~~~~l~~~~~~-g~p-i~iTE~dv~~~~~------- 197 (254)
T smart00633 163 L-G-----------------------------------SPNIAEIRAALDRFASL-GLE-IQITELDISGYPN------- 197 (254)
T ss_pred C-C-----------------------------------CCCHHHHHHHHHHHHHc-CCc-eEEEEeecCCCCc-------
Confidence 0 0 01245799999998765 765 9999999987431
Q ss_pred ccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccccCCCCCceeEEEEcCCCCccccccchHHH
Q 036948 437 ALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEWSAGYTVRFGINYVDYKDGLKRYPKLSARW 507 (514)
Q Consensus 437 ~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfGL~~VD~~~~~~R~pK~S~~~ 507 (514)
...+.+++++.+..+.. . =.|.|.+.|.+.|..+|..+ .+.||+.-|++ ||+++++
T Consensus 198 ---~~~qA~~~~~~l~~~~~---~-p~v~gi~~Wg~~d~~~W~~~--~~~~L~d~~~~------~kpa~~~ 253 (254)
T smart00633 198 ---PQAQAADYEEVFKACLA---H-PAVTGVTVWGVTDKYSWLDG--GAPLLFDANYQ------PKPAYWA 253 (254)
T ss_pred ---HHHHHHHHHHHHHHHHc---C-CCeeEEEEeCCccCCcccCC--CCceeECCCCC------CChhhhc
Confidence 24567777777766654 2 27899999999999999765 56789866664 8888764
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.38 E-value=1.1e-12 Score=137.99 Aligned_cols=109 Identities=26% Similarity=0.443 Sum_probs=88.1
Q ss_pred hchHHHHHHHHHcCCCeeeec-ccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhh---
Q 036948 97 HRYKEDVRIIKEMNLDAYRFS-ISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEY--- 172 (514)
Q Consensus 97 ~~~~eDi~lm~~lG~~~~R~s-i~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~--- 172 (514)
..+++|+++||++|+|++|+. ++|++|||++ |++|+ +++|++|+.+.++||++++.+.+...|.||.++|
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e---G~ydF---~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~ 83 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE---GQYDF---SWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEI 83 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT---TB------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC---Ceeec---HHHHHHHHHHHhccCeEEEEecccccccchhhhcccc
Confidence 469999999999999999975 6999999998 99999 7799999999999999999999999999998653
Q ss_pred ------------CC-----CCChHHHHHHHHHHHHHHHHhCCC--cceEEeccCcccc
Q 036948 173 ------------GG-----FLSPRIVNDFRDYAQVCFREFGDR--VKHWITLNEPWTY 211 (514)
Q Consensus 173 ------------gg-----w~~~~~~~~f~~ya~~~~~~~gd~--v~~W~t~NEp~~~ 211 (514)
|+ ..+|...+.+.++++.++++|++. |..|.+.|||...
T Consensus 84 ~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 84 LPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp C-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred cccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 11 224577888899999999999985 7789999999854
No 16
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.14 E-value=2.4e-08 Score=102.78 Aligned_cols=251 Identities=19% Similarity=0.271 Sum_probs=140.5
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEecc---CCCchhhHhhhCCCC
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFH---WDTPQALEDEYGGFL 176 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h---~~~P~~l~~~~ggw~ 176 (514)
++=+++||+.|+|++|+-+ | +-|.. .|..|. +.-..+..+.+++||+.+|++|- |.=|.--... ..|.
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~--~g~~~~---~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P-~aW~ 97 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYD--GGYNDL---EDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKP-AAWA 97 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TT--TTTTSH---HHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCT
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcc--cccCCH---HHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCC-ccCC
Confidence 3457999999999999988 4 34443 255555 77889999999999999999874 2333221111 5788
Q ss_pred C---hHHHHHHHHHHHHHHHHh---CCCcceEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCchhHHHHHHH
Q 036948 177 S---PRIVNDFRDYAQVCFREF---GDRVKHWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVEPYLVAHHH 250 (514)
Q Consensus 177 ~---~~~~~~f~~ya~~~~~~~---gd~v~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~ 250 (514)
+ .+..+.-.+|.+.+.+.+ |-.++++++=||.+.-. .+|-|.. ..+.-.-.+
T Consensus 98 ~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gm-------lwp~g~~---------------~~~~~~a~l 155 (332)
T PF07745_consen 98 NLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGM-------LWPDGKP---------------SNWDNLAKL 155 (332)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGES-------TBTTTCT---------------T-HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccc-------cCcCCCc---------------cCHHHHHHH
Confidence 8 567788888888888877 45689999999987421 1444432 223444455
Q ss_pred HHHHHHHHHHHHHhccCCCCceEEEEeeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhhcCCCC
Q 036948 251 LLAHAAAVHLYKNTYQTTQKGKIGITLVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVADRLPKF 330 (514)
Q Consensus 251 l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~f 330 (514)
+.|=.+| +|+.. ++.+|.+.+... .|.... .||.|-+.
T Consensus 156 l~ag~~A---Vr~~~---p~~kV~lH~~~~---------~~~~~~--------~~~f~~l~------------------- 193 (332)
T PF07745_consen 156 LNAGIKA---VREVD---PNIKVMLHLANG---------GDNDLY--------RWFFDNLK------------------- 193 (332)
T ss_dssp HHHHHHH---HHTHS---STSEEEEEES-T---------TSHHHH--------HHHHHHHH-------------------
T ss_pred HHHHHHH---HHhcC---CCCcEEEEECCC---------CchHHH--------HHHHHHHH-------------------
Confidence 5555444 45554 678886554431 121111 12222211
Q ss_pred ChhhHHhhcCCccEEEeecccceeEecCcccccCCCCCccccccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHH
Q 036948 331 SKEQSEMLEGSFDFLGLNYYTSSYVAYAPQLRSATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLYIKR 410 (514)
Q Consensus 331 t~ed~~~ikg~~DFiGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~~~~ 410 (514)
......|+||++||.- |. -....|...|+.+.+
T Consensus 194 ------~~g~d~DviGlSyYP~----------------------------------------w~-~~l~~l~~~l~~l~~ 226 (332)
T PF07745_consen 194 ------AAGVDFDVIGLSYYPF----------------------------------------WH-GTLEDLKNNLNDLAS 226 (332)
T ss_dssp ------HTTGG-SEEEEEE-ST----------------------------------------TS-T-HHHHHHHHHHHHH
T ss_pred ------hcCCCcceEEEecCCC----------------------------------------Cc-chHHHHHHHHHHHHH
Confidence 1123569999999941 10 134579999999999
Q ss_pred HhCCCeEEEeecCccCCCCCccCccc-----------ccChhhhHHHHHHHHHHHHHHHHc--CCCEEEEeecccccc
Q 036948 411 KYNNPLIYVTENGIDEVNDPKLTLEE-----------ALVDNMRIDYYYRHLYFLQKAIRY--GVKVKGYFAWSLLDN 475 (514)
Q Consensus 411 rY~~ppI~ITENG~~~~~~~~~~~~~-----------~i~D~~Ri~yl~~hl~~l~~Ai~d--Gv~V~GY~~WSl~Dn 475 (514)
||++| |+|+|.|++...+....... ...-.-..+|| ..+.+++.+ +-..+|.|+|-..-.
T Consensus 227 ry~K~-V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l----~~l~~~v~~~p~~~g~GvfYWeP~w~ 299 (332)
T PF07745_consen 227 RYGKP-VMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFL----RDLINAVKNVPNGGGLGVFYWEPAWI 299 (332)
T ss_dssp HHT-E-EEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHH----HHHHHHHHTS--TTEEEEEEE-TT-G
T ss_pred HhCCe-eEEEeccccccccccccccccCccccccCCCCCCHHHHHHHH----HHHHHHHHHhccCCeEEEEeeccccc
Confidence 99875 99999999876221000000 01112344455 455555543 679999999965433
No 17
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.05 E-value=7.3e-10 Score=110.74 Aligned_cols=109 Identities=17% Similarity=0.299 Sum_probs=90.9
Q ss_pred chHHHHHHHHHcCCCeeeecccccccc-cCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCC
Q 036948 98 RYKEDVRIIKEMNLDAYRFSISWSRIL-PNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFL 176 (514)
Q Consensus 98 ~~~eDi~lm~~lG~~~~R~si~Wsri~-P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~ 176 (514)
..++|++.|+++|+|++|+-|.|..++ |.+ .+.++...++.++++|+.+.++||.++|++++. |.|.... ++..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~--~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~ 96 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNP--GYNYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYG 96 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTST--TTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCC--CccccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-cccc
Confidence 578999999999999999999998888 566 357999999999999999999999999999886 7774332 2333
Q ss_pred C-hHHHHHHHHHHHHHHHHhCC--CcceEEeccCcccc
Q 036948 177 S-PRIVNDFRDYAQVCFREFGD--RVKHWITLNEPWTY 211 (514)
Q Consensus 177 ~-~~~~~~f~~ya~~~~~~~gd--~v~~W~t~NEp~~~ 211 (514)
. ....+.|.++.+.++++|++ .|..|.++|||...
T Consensus 97 ~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 97 NNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred cchhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 3 45678899999999999944 58899999999864
No 18
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=99.01 E-value=5.4e-08 Score=100.38 Aligned_cols=267 Identities=18% Similarity=0.213 Sum_probs=157.6
Q ss_pred ccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEE--EeccCCCchhhHhhhCCCCChH---HHHHHHHHHHHHH
Q 036948 118 ISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFV--TLFHWDTPQALEDEYGGFLSPR---IVNDFRDYAQVCF 192 (514)
Q Consensus 118 i~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v--tL~h~~~P~~l~~~~ggw~~~~---~~~~f~~ya~~~~ 192 (514)
.-|..++|.+ |.+|+ +-.+.+++-++++||++-- -+.|-..|.|+... .-+...+ ......+|.+.++
T Consensus 44 ~Kw~~~e~~~---g~~~~---~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~ 116 (320)
T PF00331_consen 44 MKWGSIEPEP---GRFNF---ESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVV 116 (320)
T ss_dssp TSHHHHESBT---TBEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcCCC---CccCc---cchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHH
Confidence 5699999998 99999 4588999999999999763 34587899999863 1233233 7888999999999
Q ss_pred HHhCC--CcceEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 036948 193 REFGD--RVKHWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLYKNTYQTTQK 270 (514)
Q Consensus 193 ~~~gd--~v~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~r~~~~~~~~ 270 (514)
++|++ +|..|=++|||..-.. .+-+.++ ...++++=. ---..|.+.-|+.. |+
T Consensus 117 ~~y~~~g~i~~WDVvNE~i~~~~-------~~~~~r~-------------~~~~~~lG~--~yi~~aF~~A~~~~---P~ 171 (320)
T PF00331_consen 117 TRYKDKGRIYAWDVVNEAIDDDG-------NPGGLRD-------------SPWYDALGP--DYIADAFRAAREAD---PN 171 (320)
T ss_dssp HHTTTTTTESEEEEEES-B-TTS-------SSSSBCT-------------SHHHHHHTT--CHHHHHHHHHHHHH---TT
T ss_pred hHhccccceEEEEEeeecccCCC-------ccccccC-------------ChhhhcccH--hHHHHHHHHHHHhC---CC
Confidence 99995 8999999999964321 0111110 122222210 01123444445554 56
Q ss_pred ceEEEEeeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhhcCCCCChhhHHhhcCCccEEEeecc
Q 036948 271 GKIGITLVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVADRLPKFSKEQSEMLEGSFDFLGLNYY 350 (514)
Q Consensus 271 ~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNyY 350 (514)
++.-+. ......+ +++ ..+. .|.+.+.+ -..++|=||++-.
T Consensus 172 a~L~~N-Dy~~~~~----------~k~-~~~~---------------~lv~~l~~------------~gvpIdgIG~Q~H 212 (320)
T PF00331_consen 172 AKLFYN-DYNIESP----------AKR-DAYL---------------NLVKDLKA------------RGVPIDGIGLQSH 212 (320)
T ss_dssp SEEEEE-ESSTTST----------HHH-HHHH---------------HHHHHHHH------------TTHCS-EEEEEEE
T ss_pred cEEEec-cccccch----------HHH-HHHH---------------HHHHHHHh------------CCCccceechhhc
Confidence 655432 2221111 111 0110 01111111 1124799999754
Q ss_pred cceeEecCcccccCCCCCccccccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHhCCCeEEEeecCccCCCCC
Q 036948 351 TSSYVAYAPQLRSATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLYIKRKYNNPLIYVTENGIDEVNDP 430 (514)
Q Consensus 351 ts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~ 430 (514)
-.. ...|..+...|+++.+ .+. ||.|||..+...+.+
T Consensus 213 ~~~-----------------------------------------~~~~~~i~~~l~~~~~-~Gl-~i~ITElDv~~~~~~ 249 (320)
T PF00331_consen 213 FDA-----------------------------------------GYPPEQIWNALDRFAS-LGL-PIHITELDVRDDDNP 249 (320)
T ss_dssp EET-----------------------------------------TSSHHHHHHHHHHHHT-TTS-EEEEEEEEEESSSTT
T ss_pred cCC-----------------------------------------CCCHHHHHHHHHHHHH-cCC-ceEEEeeeecCCCCC
Confidence 210 0116789999999854 565 599999999876421
Q ss_pred ccCcccccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccccCCCCC-ceeEEEEcCCCCccccccchHHHHH
Q 036948 431 KLTLEEALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEWSAGYTV-RFGINYVDYKDGLKRYPKLSARWFK 509 (514)
Q Consensus 431 ~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~-rfGL~~VD~~~~~~R~pK~S~~~y~ 509 (514)
. ..-.+..+.+++++.+..+...-.. .|.|.+.|.+.|..+|-....+ +=+|+.-|+. ||++++.+.
T Consensus 250 ~----~~~~~~~qA~~~~~~~~~~~~~~~~--~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~~~------~Kpa~~~~~ 317 (320)
T PF00331_consen 250 P----DAEEEEAQAEYYRDFLTACFSHPPA--AVEGITWWGFTDGYSWRPDTPPDRPLLFDEDYQ------PKPAYDAIV 317 (320)
T ss_dssp S----CHHHHHHHHHHHHHHHHHHHHTTHC--TEEEEEESSSBTTGSTTGGHSEG--SSB-TTSB------B-HHHHHHH
T ss_pred c----chHHHHHHHHHHHHHHHHHHhCCcc--CCCEEEEECCCCCCcccCCCCCCCCeeECCCcC------CCHHHHHHH
Confidence 0 0112456777777777666654222 8999999999999999765323 3366655554 999988776
Q ss_pred H
Q 036948 510 K 510 (514)
Q Consensus 510 ~ 510 (514)
+
T Consensus 318 ~ 318 (320)
T PF00331_consen 318 D 318 (320)
T ss_dssp H
T ss_pred h
Confidence 5
No 19
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.99 E-value=7e-08 Score=107.87 Aligned_cols=264 Identities=18% Similarity=0.155 Sum_probs=150.9
Q ss_pred hhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHh-----
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALED----- 170 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~----- 170 (514)
...+..|+++||++|+|++|+| ..|.. + .+++.|=+.||-++.-+.-+....|+..
T Consensus 312 ~~~~~~d~~l~K~~G~N~vR~s-----h~p~~-------~-------~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~ 372 (604)
T PRK10150 312 EVLNVHDHNLMKWIGANSFRTS-----HYPYS-------E-------EMLDLADRHGIVVIDETPAVGLNLSFGAGLEAG 372 (604)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----cCCCC-------H-------HHHHHHHhcCcEEEEeccccccccccccccccc
Confidence 3457899999999999999995 23432 2 5678888999987765543333223210
Q ss_pred --hhCCCC----ChHHHHHHHHHHHHHHHHhCCC--cceEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCch
Q 036948 171 --EYGGFL----SPRIVNDFRDYAQVCFREFGDR--VKHWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVE 242 (514)
Q Consensus 171 --~~ggw~----~~~~~~~f~~ya~~~~~~~gd~--v~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~ 242 (514)
....|. +++..+.+.+-++.+++++.++ |..|.+-||+... .++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~~~----------~~~------------------ 424 (604)
T PRK10150 373 NKPKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPASR----------EQG------------------ 424 (604)
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCCcc----------chh------------------
Confidence 001222 3567888899999999999886 6789999996310 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEeeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHH
Q 036948 243 PYLVAHHHLLAHAAAVHLYKNTYQTTQKGKIGITLVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSL 322 (514)
Q Consensus 243 ~~~~~h~~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~ 322 (514)
... .+...++.+|+.. +.-.|..+.+... .+ ..
T Consensus 425 -~~~------~~~~l~~~~k~~D---ptR~vt~~~~~~~--------------------------~~---~~-------- 457 (604)
T PRK10150 425 -ARE------YFAPLAELTRKLD---PTRPVTCVNVMFA--------------------------TP---DT-------- 457 (604)
T ss_pred -HHH------HHHHHHHHHHhhC---CCCceEEEecccC--------------------------Cc---cc--------
Confidence 001 1223455667665 3333333221100 00 00
Q ss_pred HhhcCCCCChhhHHhhcCCccEEEeecccceeEecCcccccCCCCCccccccccccccCCcccCCCCCCCCcccChHHHH
Q 036948 323 VADRLPKFSKEQSEMLEGSFDFLGLNYYTSSYVAYAPQLRSATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIW 402 (514)
Q Consensus 323 l~~~lp~ft~ed~~~ikg~~DFiGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~ 402 (514)
..+...+|++|+|.|...+...... . .+ -..|.
T Consensus 458 -------------~~~~~~~Dv~~~N~Y~~wy~~~~~~----------------------------~-----~~-~~~~~ 490 (604)
T PRK10150 458 -------------DTVSDLVDVLCLNRYYGWYVDSGDL----------------------------E-----TA-EKVLE 490 (604)
T ss_pred -------------ccccCcccEEEEcccceecCCCCCH----------------------------H-----HH-HHHHH
Confidence 0011235999999886532111000 0 00 01244
Q ss_pred HHHHHHHHHhCCCeEEEeecCccCCCCCccCcccccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccccCCC
Q 036948 403 DLLLYIKRKYNNPLIYVTENGIDEVNDPKLTLEEALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEWSAGY 482 (514)
Q Consensus 403 ~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy 482 (514)
..+....+.|+.| ++|||.|.+....-....++.-..++...|+++|+..+. +-=-|.|-++|.+.|-. +..|.
T Consensus 491 ~~~~~~~~~~~kP-~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~----~~p~~~G~~iW~~~D~~-~~~g~ 564 (604)
T PRK10150 491 KELLAWQEKLHKP-IIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFD----RVPAVVGEQVWNFADFA-TSQGI 564 (604)
T ss_pred HHHHHHHHhcCCC-EEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHh----cCCceEEEEEEeeeccC-CCCCC
Confidence 4455556667555 999999964421000000111235567777777776544 44589999999999932 22221
Q ss_pred ----CCceeEEEEcCCCCccccccchHHHHHHHh
Q 036948 483 ----TVRFGINYVDYKDGLKRYPKLSARWFKKFL 512 (514)
Q Consensus 483 ----~~rfGL~~VD~~~~~~R~pK~S~~~y~~ii 512 (514)
....||+. ..|+||+++++||++-
T Consensus 565 ~~~~g~~~Gl~~------~dr~~k~~~~~~k~~~ 592 (604)
T PRK10150 565 LRVGGNKKGIFT------RDRQPKSAAFLLKKRW 592 (604)
T ss_pred cccCCCcceeEc------CCCCChHHHHHHHHHh
Confidence 13567763 4467999999999864
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.86 E-value=9e-08 Score=104.23 Aligned_cols=290 Identities=21% Similarity=0.312 Sum_probs=136.3
Q ss_pred chHHHHHHHH-HcCCCeeeec--c--ccccccc-CCCCCC--CCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhH
Q 036948 98 RYKEDVRIIK-EMNLDAYRFS--I--SWSRILP-NGKLSG--GVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALE 169 (514)
Q Consensus 98 ~~~eDi~lm~-~lG~~~~R~s--i--~Wsri~P-~~~~~g--~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~ 169 (514)
.+.+.++.++ ++|++.+||- + +..-..+ ++ +| .+|+ ...|.++|.|+++||+|+|.|.. +|.++.
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~--~~~~~Ynf---~~lD~i~D~l~~~g~~P~vel~f--~p~~~~ 112 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDE--DGIPPYNF---TYLDQILDFLLENGLKPFVELGF--MPMALA 112 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEET--TEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGB
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhcccccc--CCCCcCCh---HHHHHHHHHHHHcCCEEEEEEEe--chhhhc
Confidence 3677777776 9999999985 2 2222222 22 13 2899 77899999999999999999976 666654
Q ss_pred hh------hCCCCC-hHHHHHHHHHHHHHHHH----hCC-Ccc--eEEeccCcccccccccCCCCCCCCCCCcccccccC
Q 036948 170 DE------YGGFLS-PRIVNDFRDYAQVCFRE----FGD-RVK--HWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCT 235 (514)
Q Consensus 170 ~~------~ggw~~-~~~~~~f~~ya~~~~~~----~gd-~v~--~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~ 235 (514)
.. +.|+.+ |+..+.+.++++.+++| ||. .|. +|.++|||++... +..|.
T Consensus 113 ~~~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f-------~~~~~---------- 175 (486)
T PF01229_consen 113 SGYQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDF-------WWDGT---------- 175 (486)
T ss_dssp SS--EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTT-------SGGG-----------
T ss_pred CCCCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccc-------cCCCC----------
Confidence 21 123333 35556666666555555 553 465 4689999996321 11111
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEeeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccC
Q 036948 236 GGDSGVEPYLVAHHHLLAHAAAVHLYKNTYQTTQKGKIGITLVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNY 315 (514)
Q Consensus 236 ~~~~~~~~~~~~h~~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~Y 315 (514)
...|- .+. ..+++++|+.. |..+||-.--. .... ..+..
T Consensus 176 -----~~ey~---~ly---~~~~~~iK~~~---p~~~vGGp~~~------~~~~---~~~~~------------------ 214 (486)
T PF01229_consen 176 -----PEEYF---ELY---DATARAIKAVD---PELKVGGPAFA------WAYD---EWCED------------------ 214 (486)
T ss_dssp -----HHHHH---HHH---HHHHHHHHHH----TTSEEEEEEEE------TT-T---HHHHH------------------
T ss_pred -----HHHHH---HHH---HHHHHHHHHhC---CCCcccCcccc------ccHH---HHHHH------------------
Confidence 11121 222 33556667765 78899855100 0000 01111
Q ss_pred ChhhHHHHhhcCCCCChhhHHhhcCCccEEEeecccceeEecCcccccCCCCCccccccccccccCCcccCCCCCCCCcc
Q 036948 316 PHTMQSLVADRLPKFSKEQSEMLEGSFDFLGLNYYTSSYVAYAPQLRSATKSCLTDAIANLLSERNGVLIGPKAASDWLY 395 (514)
Q Consensus 316 P~~~~~~l~~~lp~ft~ed~~~ikg~~DFiGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~ 395 (514)
+.+++..+ .-++|||.+..|.......... ..... ..+. ..
T Consensus 215 ---~l~~~~~~------------~~~~DfiS~H~y~~~~~~~~~~-----------~~~~~-----------~~~~--~~ 255 (486)
T PF01229_consen 215 ---FLEFCKGN------------NCPLDFISFHSYGTDSAEDINE-----------NMYER-----------IEDS--RR 255 (486)
T ss_dssp ---HHHHHHHC------------T---SEEEEEEE-BESESE-SS------------EEEE-----------B--H--HH
T ss_pred ---HHHHHhcC------------CCCCCEEEEEecccccccccch-----------hHHhh-----------hhhH--HH
Confidence 11111111 1246999999997642211000 00000 0000 01
Q ss_pred cChHHHHHHHHHHHHH-hCCCeEEEeecCccCCCCCccCcccccChh-hhHHHHHHHHHHHHHHHHcCCCEEEEeecccc
Q 036948 396 VYPRGIWDLLLYIKRK-YNNPLIYVTENGIDEVNDPKLTLEEALVDN-MRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLL 473 (514)
Q Consensus 396 i~P~Gl~~~L~~~~~r-Y~~ppI~ITENG~~~~~~~~~~~~~~i~D~-~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~ 473 (514)
+.| .+..+..-+.+. +++.|+++||=...... ...++|+ ++..|+.+. ++. .+|..+-++.+|++.
T Consensus 256 ~~~-~~~~~~~~~~~e~~p~~~~~~tE~n~~~~~------~~~~~dt~~~aA~i~k~---lL~--~~~~~l~~~sywt~s 323 (486)
T PF01229_consen 256 LFP-ELKETRPIINDEADPNLPLYITEWNASISP------RNPQHDTCFKAAYIAKN---LLS--NDGAFLDSFSYWTFS 323 (486)
T ss_dssp HHH-HHHHHHHHHHTSSSTT--EEEEEEES-SST------T-GGGGSHHHHHHHHH----HHH--HGGGT-SEEEES-SB
T ss_pred HHH-HHHHHHHHHhhccCCCCceeecccccccCC------CcchhccccchhhHHHH---HHH--hhhhhhhhhhccchh
Confidence 112 233333323222 34447999995554432 1234553 455555433 222 255667779999999
Q ss_pred ccccccCC-----CCCceeEEEEcCCCCccccccchHHHHHH
Q 036948 474 DNFEWSAG-----YTVRFGINYVDYKDGLKRYPKLSARWFKK 510 (514)
Q Consensus 474 Dn~EW~~G-----y~~rfGL~~VD~~~~~~R~pK~S~~~y~~ 510 (514)
|.||= .+ +..-|||+..+ .++|+|++.|+=
T Consensus 324 D~Fee-~~~~~~pf~ggfGLlt~~------gI~KPa~~A~~~ 358 (486)
T PF01229_consen 324 DRFEE-NGTPRKPFHGGFGLLTKL------GIPKPAYYAFQL 358 (486)
T ss_dssp S---T-TSS-SSSSSS-S-SEECC------CEE-HHHHHHHH
T ss_pred hhhhc-cCCCCCceecchhhhhcc------CCCchHHHHHHH
Confidence 99983 23 33468998644 679999887763
No 21
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=7.3e-07 Score=89.61 Aligned_cols=266 Identities=18% Similarity=0.227 Sum_probs=158.7
Q ss_pred ccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEE-E-eccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCC
Q 036948 120 WSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFV-T-LFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFREFGD 197 (514)
Q Consensus 120 Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v-t-L~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd 197 (514)
|.-|+|+. |.+|+++ -|.+.+-+++|||.--- | +.|--.|.||.- -.+..+...+...++...|++||.+
T Consensus 69 we~i~p~~---G~f~Fe~---AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~--~e~~~~~~~~~~e~hI~tV~~rYkg 140 (345)
T COG3693 69 WEAIEPER---GRFNFEA---ADAIANFARKHNMPLHGHTLVWHSQVPDWLFG--DELSKEALAKMVEEHIKTVVGRYKG 140 (345)
T ss_pred cccccCCC---CccCccc---hHHHHHHHHHcCCeeccceeeecccCCchhhc--cccChHHHHHHHHHHHHHHHHhccC
Confidence 99999987 9999966 67899999999997322 2 357889999963 2477789999999999999999999
Q ss_pred CcceEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEe
Q 036948 198 RVKHWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVEPYLVAHHHLLAHAAAVHLYKNTYQTTQKGKIGITL 277 (514)
Q Consensus 198 ~v~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~h~~l~AHa~A~~~~r~~~~~~~~~~IGi~~ 277 (514)
.|..|=+.|||-- ...++-...|.-+.. +.+ ++. +|.+.-|+.. |+++.-+..
T Consensus 141 ~~~sWDVVNE~vd-d~g~~R~s~w~~~~~-------------gpd------~I~----~aF~~Aread---P~AkL~~ND 193 (345)
T COG3693 141 SVASWDVVNEAVD-DQGSLRRSAWYDGGT-------------GPD------YIK----LAFHIAREAD---PDAKLVIND 193 (345)
T ss_pred ceeEEEecccccC-CCchhhhhhhhccCC-------------ccH------HHH----HHHHHHHhhC---CCceEEeec
Confidence 9999999999964 222222211211110 112 111 2344445544 677764322
Q ss_pred eCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhhcCCCCChhhHHhhcC-CccEEEeecccceeEe
Q 036948 278 VSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVADRLPKFSKEQSEMLEG-SFDFLGLNYYTSSYVA 356 (514)
Q Consensus 278 ~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~lp~ft~ed~~~ikg-~~DFiGiNyYts~~v~ 356 (514)
+. ...+| +.+.. +. -|++.|.+ || ++|=||++---+.
T Consensus 194 -Y~----ie~~~----~kr~~--~~---------------nlI~~Lke-------------kG~pIDgiG~QsH~~~--- 231 (345)
T COG3693 194 -YS----IEGNP----AKRNY--VL---------------NLIEELKE-------------KGAPIDGIGIQSHFSG--- 231 (345)
T ss_pred -cc----ccCCh----HHHHH--HH---------------HHHHHHHH-------------CCCCccceeeeeeecC---
Confidence 21 11222 22211 10 02222211 34 4799998754110
Q ss_pred cCcccccCCCCCccccccccccccCCcccCCCCCCCCcccChHHHHHHHHHHHHHhCCCeEEEeecCccCCCCCccCccc
Q 036948 357 YAPQLRSATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLYIKRKYNNPLIYVTENGIDEVNDPKLTLEE 436 (514)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~ 436 (514)
+| ..++-.+..+....+. +.| |||||--+.+.+ +. .+
T Consensus 232 -----------------------------------~~--~~~~~~~~a~~~~~k~-Gl~-i~VTELD~~~~~-P~---~~ 268 (345)
T COG3693 232 -----------------------------------DG--PSIEKMRAALLKFSKL-GLP-IYVTELDMSDYT-PD---SG 268 (345)
T ss_pred -----------------------------------CC--CCHHHHHHHHHHHhhc-CCC-ceEEEeeeeccC-CC---Cc
Confidence 11 1122233333333333 665 999999998753 11 11
Q ss_pred ccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeeccccccccccCCCCCcee-----EEEEcCCCCccccccchHHHHHHH
Q 036948 437 ALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEWSAGYTVRFG-----INYVDYKDGLKRYPKLSARWFKKF 511 (514)
Q Consensus 437 ~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW~~Gy~~rfG-----L~~VD~~~~~~R~pK~S~~~y~~i 511 (514)
+-.+..+.++.+ .+.-.......-+|.+.+.|.++|+++|..|..++++ ++.=+ =+||+..++..++
T Consensus 269 ~p~~~~~~~~~~--~~~f~~~~~~~~~v~~it~WGi~D~ySWl~g~~~~~~~~rPl~~D~n------~~pKPa~~aI~e~ 340 (345)
T COG3693 269 APRLYLQKAASR--AKAFLLLLLNPNQVKAITFWGITDRYSWLRGRDPRRDGLRPLLFDDN------YQPKPAYKAIAEV 340 (345)
T ss_pred cHHHHHHHHHHH--HHHHHHHHhcccccceEEEeeeccCcccccCCccCcCCCCCcccCCC------CCcchHHHHHHHH
Confidence 212222222221 1112222356677999999999999999999888885 22222 3499999988877
Q ss_pred hc
Q 036948 512 LK 513 (514)
Q Consensus 512 i~ 513 (514)
..
T Consensus 341 la 342 (345)
T COG3693 341 LA 342 (345)
T ss_pred hc
Confidence 64
No 22
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=7.1e-09 Score=114.68 Aligned_cols=119 Identities=18% Similarity=0.326 Sum_probs=95.0
Q ss_pred chHHHHHHHHHcCCCeeeecc-cccccccCCCCCCCCChHHHHHHHHH-HHHHHHCCCccEEEe-ccCCCchhhHhhh--
Q 036948 98 RYKEDVRIIKEMNLDAYRFSI-SWSRILPNGKLSGGVNKEGIRFYNNL-INELTANGIQPFVTL-FHWDTPQALEDEY-- 172 (514)
Q Consensus 98 ~~~eDi~lm~~lG~~~~R~si-~Wsri~P~~~~~g~~n~~gl~~y~~~-i~~l~~~gI~p~vtL-~h~~~P~~l~~~~-- 172 (514)
-|++|+++||++|+|++|.++ +|++++|+. |++|+. +.|.. |+.+.+.||.+++.. .....|.|+.++|
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e---G~fdf~---~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pe 104 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE---GKFDFT---WLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPE 104 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc---cccCcc---cchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChh
Confidence 378999999999999999966 999999998 999994 78888 999999999999999 8899999998763
Q ss_pred -------------CCCCChHHH-HHHHHHHHH----HHHH-hCCC--cceEEeccCccc-ccccccCCCCCC
Q 036948 173 -------------GGFLSPRIV-NDFRDYAQV----CFRE-FGDR--VKHWITLNEPWT-YSVGGYGDGSLA 222 (514)
Q Consensus 173 -------------ggw~~~~~~-~~f~~ya~~----~~~~-~gd~--v~~W~t~NEp~~-~~~~~y~~G~~~ 222 (514)
|+|.+-... ..|.+|++. +.+| ||+. |-.|++-||... .+...|+...|+
T Consensus 105 iL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 105 ILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred heEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 566443222 246666666 7788 7774 778999999876 555556555554
No 23
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=98.04 E-value=4.1e-05 Score=78.08 Aligned_cols=92 Identities=16% Similarity=0.205 Sum_probs=62.0
Q ss_pred hhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhC--
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYG-- 173 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~g-- 173 (514)
...++.|+++||+||+|++|++- .|. ++ .+++.|-+.||-++.-+.....-.|-. .+
T Consensus 35 ~~~~~~d~~l~k~~G~N~iR~~h-----~p~-------~~-------~~~~~cD~~GilV~~e~~~~~~~~~~~--~~~~ 93 (298)
T PF02836_consen 35 DEAMERDLELMKEMGFNAIRTHH-----YPP-------SP-------RFYDLCDELGILVWQEIPLEGHGSWQD--FGNC 93 (298)
T ss_dssp HHHHHHHHHHHHHTT-SEEEETT-----S---------SH-------HHHHHHHHHT-EEEEE-S-BSCTSSSS--TSCT
T ss_pred HHHHHHHHHHHHhcCcceEEccc-----ccC-------cH-------HHHHHHhhcCCEEEEeccccccCcccc--CCcc
Confidence 57899999999999999999832 222 22 567778889998877654322211210 01
Q ss_pred --CCCChHHHHHHHHHHHHHHHHhCCC--cceEEeccCc
Q 036948 174 --GFLSPRIVNDFRDYAQVCFREFGDR--VKHWITLNEP 208 (514)
Q Consensus 174 --gw~~~~~~~~f~~ya~~~~~~~gd~--v~~W~t~NEp 208 (514)
--.++...+.+.+-++.+++++.++ |..|.+.||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 94 NYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp SCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 0135778888988999999999885 7889999998
No 24
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=0.0064 Score=60.87 Aligned_cols=253 Identities=14% Similarity=0.181 Sum_probs=140.1
Q ss_pred HHHHHHHHcCCCeeeecc-cccccc---cCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEec---cCCCchhhHhhhC
Q 036948 101 EDVRIIKEMNLDAYRFSI-SWSRIL---PNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLF---HWDTPQALEDEYG 173 (514)
Q Consensus 101 eDi~lm~~lG~~~~R~si-~Wsri~---P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~---h~~~P~~l~~~~g 173 (514)
+=++.||+.|||.+|+-| .=++=. +-+ .|.=|. +---.+-.+++.+||++++..| ||.=|..-.. --
T Consensus 67 D~~~iLK~~GvNyvRlRvwndP~dsngn~yg--gGnnD~---~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~k-Pk 140 (403)
T COG3867 67 DALQILKNHGVNYVRLRVWNDPYDSNGNGYG--GGNNDL---KKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKK-PK 140 (403)
T ss_pred HHHHHHHHcCcCeEEEEEecCCccCCCCccC--CCcchH---HHHHHHHHHHHhcCcEEEeeccchhhccChhhcCC-cH
Confidence 447999999999999977 221111 111 122232 3344667788899999999876 4555643222 14
Q ss_pred CCCCh---HHHHHHHHHHHHHHHH---hCCCcceEEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCchhHHHH
Q 036948 174 GFLSP---RIVNDFRDYAQVCFRE---FGDRVKHWITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGVEPYLVA 247 (514)
Q Consensus 174 gw~~~---~~~~~f~~ya~~~~~~---~gd~v~~W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~ 247 (514)
.|.+- ....+--+|.+.+... =|-.+.+-++=||-+- |+ .||-|.. ..+.-+
T Consensus 141 aW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~----gf---lwp~Ge~---------------~~f~k~ 198 (403)
T COG3867 141 AWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNG----GF---LWPDGEG---------------RNFDKM 198 (403)
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCC----ce---eccCCCC---------------cChHHH
Confidence 56652 3333444455555444 4667888999999762 22 2564432 123333
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCceEEEEeeCceeecCCCCHHHHHHHHHHHHHhhcccccccccccCChhhHHHHhhcC
Q 036948 248 HHHLLAHAAAVHLYKNTYQTTQKGKIGITLVSSWMVPYSSAKHHQNAAERALDFMLGWFMDPLTNGNYPHTMQSLVADRL 327 (514)
Q Consensus 248 h~~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~~~~~D~~AA~~~~~~~~~~fldpi~~G~YP~~~~~~l~~~l 327 (514)
-.++.| +++++||.. |.-+|- ++.. .|.+++. ..|+.|-+.
T Consensus 199 a~L~n~---g~~avrev~---p~ikv~--lHla--~g~~n~~-------------y~~~fd~lt---------------- 239 (403)
T COG3867 199 AALLNA---GIRAVREVS---PTIKVA--LHLA--EGENNSL-------------YRWIFDELT---------------- 239 (403)
T ss_pred HHHHHH---HhhhhhhcC---CCceEE--EEec--CCCCCch-------------hhHHHHHHH----------------
Confidence 445544 455567653 555554 3332 2333321 123323221
Q ss_pred CCCChhhHHhhcCCccEEEeecccceeEecCcccccCCCCCccccccccccccCCcccCCCCCCCCcccChHHHHHHHHH
Q 036948 328 PKFSKEQSEMLEGSFDFLGLNYYTSSYVAYAPQLRSATKSCLTDAIANLLSERNGVLIGPKAASDWLYVYPRGIWDLLLY 407 (514)
Q Consensus 328 p~ft~ed~~~ikg~~DFiGiNyYts~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~w~~i~P~Gl~~~L~~ 407 (514)
.-.-+.|.||.+||.- +.. .=..|...|..
T Consensus 240 ---------k~nvdfDVig~SyYpy--Whg---------------------------------------tl~nL~~nl~d 269 (403)
T COG3867 240 ---------KRNVDFDVIGSSYYPY--WHG---------------------------------------TLNNLTTNLND 269 (403)
T ss_pred ---------HcCCCceEEeeecccc--ccC---------------------------------------cHHHHHhHHHH
Confidence 1123569999999941 110 00247778999
Q ss_pred HHHHhCCCeEEEeecCccCCCCCc------cCccc-----ccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeecccc
Q 036948 408 IKRKYNNPLIYVTENGIDEVNDPK------LTLEE-----ALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLL 473 (514)
Q Consensus 408 ~~~rY~~ppI~ITENG~~~~~~~~------~~~~~-----~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~ 473 (514)
+..||++. +||.|.+.+..-++. -+.++ .+.=+-+..++++-++.+... -+.+=.|.|+|-.-
T Consensus 270 ia~rY~K~-VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~nv--p~~~GlGvFYWEp~ 343 (403)
T COG3867 270 IASRYHKD-VMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKNV--PKSNGLGVFYWEPA 343 (403)
T ss_pred HHHHhcCe-EEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHhC--CCCCceEEEEeccc
Confidence 99999886 999999874322110 01111 111123567777777766543 34456899999654
No 25
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.75 E-value=0.00014 Score=75.05 Aligned_cols=109 Identities=14% Similarity=0.157 Sum_probs=74.9
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe--------ccCCCchhhH
Q 036948 98 RYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL--------FHWDTPQALE 169 (514)
Q Consensus 98 ~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--------~h~~~P~~l~ 169 (514)
.|++-++.||++|+|++-+-|.|...||.+ |++|+.|..=.+.+|+.++++|+.+++-. ..-.+|.||.
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~---g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~ 101 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE---GQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLL 101 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT---TB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC---CcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhh
Confidence 488889999999999999999999999998 99999998889999999999999977743 2356999998
Q ss_pred hhhCCCC---ChHHHHHHHHHHHHHHHHhCC-------CcceEEeccCcc
Q 036948 170 DEYGGFL---SPRIVNDFRDYAQVCFREFGD-------RVKHWITLNEPW 209 (514)
Q Consensus 170 ~~~ggw~---~~~~~~~f~~ya~~~~~~~gd-------~v~~W~t~NEp~ 209 (514)
.+.+... ++...++-.+|.+.+++...+ -|..-++=||..
T Consensus 102 ~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 102 RKPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp GSTTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 7633322 345666666666666666533 366778888854
No 26
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=97.45 E-value=0.0004 Score=74.11 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCC-CCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhh---CCC
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLS-GGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEY---GGF 175 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~-g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~---ggw 175 (514)
++|+..||+.|+|++|+-+.|-.+.+.+... ...+...+.+.+++|+.+++.||.+++.+|+..-+.--.+.- +.+
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 8999999999999999999855555432001 222233445899999999999999999999876333222220 112
Q ss_pred C-ChHHHHHHHHHHHHHHHHhCCC--cceEEeccCccc
Q 036948 176 L-SPRIVNDFRDYAQVCFREFGDR--VKHWITLNEPWT 210 (514)
Q Consensus 176 ~-~~~~~~~f~~ya~~~~~~~gd~--v~~W~t~NEp~~ 210 (514)
. ....++.+.+--+.++.+|++. |-...++|||+.
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 2 3567799999999999999883 455889999985
No 27
>PLN03059 beta-galactosidase; Provisional
Probab=97.34 E-value=0.0021 Score=73.14 Aligned_cols=110 Identities=14% Similarity=0.094 Sum_probs=89.3
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe--------ccCCCchhh
Q 036948 97 HRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL--------FHWDTPQAL 168 (514)
Q Consensus 97 ~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--------~h~~~P~~l 168 (514)
..|++=|+.||.+|+|++-.=|.|...||.+ |++|++|..=..++|+.+.+.|+-+|+-. -.-.+|.||
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~---G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL 135 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP---GNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWL 135 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCC---CeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhh
Confidence 4588889999999999999999999999998 99999999889999999999999877743 357899999
Q ss_pred HhhhCCC----CChHHHHHHHHHHHHHHHHhC---------CCcceEEeccCccc
Q 036948 169 EDEYGGF----LSPRIVNDFRDYAQVCFREFG---------DRVKHWITLNEPWT 210 (514)
Q Consensus 169 ~~~~ggw----~~~~~~~~f~~ya~~~~~~~g---------d~v~~W~t~NEp~~ 210 (514)
... .|- .++.+.++-.+|.+.+++.+. .-|-..++=||...
T Consensus 136 ~~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYGs 189 (840)
T PLN03059 136 KYV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYGP 189 (840)
T ss_pred hcC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccccc
Confidence 753 342 256777777777777777763 34677888888653
No 28
>PLN00197 beta-amylase; Provisional
Probab=96.96 E-value=0.011 Score=63.98 Aligned_cols=109 Identities=17% Similarity=0.266 Sum_probs=83.0
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccC------------
Q 036948 95 SYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHW------------ 162 (514)
Q Consensus 95 ~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~------------ 162 (514)
+-.-.+..++.||.+||..+-+.+=|.-+|+++ .++|||.| |+++++.+++.|++..+.|.-+
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~--p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~I 199 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERES--PGVYNWGG---YNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTI 199 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC--CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcccc
Confidence 334588999999999999999999999999988 49999955 9999999999999977776433
Q ss_pred CCchhhHhh--------h---CCCCC----------------hHHHHHHHHHHHHHHHHhCCCcceEEeccCccc
Q 036948 163 DTPQALEDE--------Y---GGFLS----------------PRIVNDFRDYAQVCFREFGDRVKHWITLNEPWT 210 (514)
Q Consensus 163 ~~P~~l~~~--------~---ggw~~----------------~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~ 210 (514)
.||.|+.+. | .|..| +.-++.|.+|-+-.-.+|.+... -||.|..+
T Consensus 200 pLP~WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 200 PLPKWVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred cCCHHHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 599998753 0 12222 22257888888888777776554 35666543
No 29
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.88 E-value=0.0013 Score=69.01 Aligned_cols=106 Identities=18% Similarity=0.327 Sum_probs=80.2
Q ss_pred hhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEec------------cCC
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLF------------HWD 163 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~------------h~~ 163 (514)
+.-.+.+++.||++||..+-+.+=|.-+|+++ .+++||.+ |+++.+.+++.|++..+.|. +..
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~--p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~Ip 89 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEG--PQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIP 89 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSS--TTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCC--CCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCc
Confidence 44789999999999999999999999999997 49999954 99999999999999887663 347
Q ss_pred CchhhHhh-----------hCC--------CCChHHHHHHHHHHHHHHHHhCCCcceEEeccCcc
Q 036948 164 TPQALEDE-----------YGG--------FLSPRIVNDFRDYAQVCFREFGDRVKHWITLNEPW 209 (514)
Q Consensus 164 ~P~~l~~~-----------~gg--------w~~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~ 209 (514)
||.|+.++ .|. |....+++.|.+|-+...++|.+.. -|+-|..
T Consensus 90 LP~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 90 LPSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp S-HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred CCHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 89998653 122 4444559999999999999997754 5666654
No 30
>PLN02161 beta-amylase
Probab=96.87 E-value=0.0039 Score=66.75 Aligned_cols=111 Identities=14% Similarity=0.230 Sum_probs=85.5
Q ss_pred CchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccC----------
Q 036948 93 VDSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHW---------- 162 (514)
Q Consensus 93 ~d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~---------- 162 (514)
..+..-.+..++.||.+||..+-+.+=|.-+|+++ .+++||.| |+++++.+++.|++..+.|.-+
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~--p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~ 187 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFS--PLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMHLFGGKG 187 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCC--CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 56777889999999999999999999999999988 49999955 9999999999999977776433
Q ss_pred --CCchhhHhh--------h---CCCCC----------------hHHHHHHHHHHHHHHHHhCCCcceEEeccCccc
Q 036948 163 --DTPQALEDE--------Y---GGFLS----------------PRIVNDFRDYAQVCFREFGDRVKHWITLNEPWT 210 (514)
Q Consensus 163 --~~P~~l~~~--------~---ggw~~----------------~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~ 210 (514)
.||.|+.+. | .|..| +.-++.|.+|-+-...+|.+... -|+.|..+
T Consensus 188 ~IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 188 GISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred CccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 499998752 0 22222 22346788888887777776553 36666543
No 31
>PLN02803 beta-amylase
Probab=96.83 E-value=0.0039 Score=67.06 Aligned_cols=108 Identities=17% Similarity=0.271 Sum_probs=82.1
Q ss_pred hhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccC------------C
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHW------------D 163 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~------------~ 163 (514)
-.-.+..++.||++||..+-+.+=|.-+|+++ .+++||.| |+++++.+++.|++..+.|.-+ -
T Consensus 106 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~--p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~Ip 180 (548)
T PLN02803 106 PRAMNASLMALRSAGVEGVMVDAWWGLVEKDG--PMKYNWEG---YAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIP 180 (548)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeeeeeccCC--CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccccc
Confidence 35578899999999999999999999999987 49999955 9999999999999977776433 5
Q ss_pred CchhhHhh--------h---CCCCC----------------hHHHHHHHHHHHHHHHHhCCCcceEEeccCccc
Q 036948 164 TPQALEDE--------Y---GGFLS----------------PRIVNDFRDYAQVCFREFGDRVKHWITLNEPWT 210 (514)
Q Consensus 164 ~P~~l~~~--------~---ggw~~----------------~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~ 210 (514)
||.|+.+. | .|..| +.-++.|.+|-+-...+|.+... -||.|..+
T Consensus 181 LP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred CCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 99998753 0 12222 22346777777777777766543 46667543
No 32
>PLN02801 beta-amylase
Probab=96.75 E-value=0.0068 Score=64.96 Aligned_cols=101 Identities=17% Similarity=0.302 Sum_probs=78.4
Q ss_pred chhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEecc------------
Q 036948 94 DSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFH------------ 161 (514)
Q Consensus 94 d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h------------ 161 (514)
.+-.-.+..++.||++||..+-+.+=|.-+|.++ .+++||.| |+++++.+++.|++..+.|.-
T Consensus 34 ~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~--P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~ 108 (517)
T PLN02801 34 EDEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKG--PKQYDWSA---YRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVN 108 (517)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCC--CCccCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCccc
Confidence 3344578999999999999999999999999987 49999955 999999999999997776643
Q ss_pred CCCchhhHhh--------h---CCCC----------------ChHHHHHHHHHHHHHHHHhCCCc
Q 036948 162 WDTPQALEDE--------Y---GGFL----------------SPRIVNDFRDYAQVCFREFGDRV 199 (514)
Q Consensus 162 ~~~P~~l~~~--------~---ggw~----------------~~~~~~~f~~ya~~~~~~~gd~v 199 (514)
..||+|+.+. | .|.. .+.-++.|.+|-+-...+|.+..
T Consensus 109 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l 173 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADFL 173 (517)
T ss_pred ccCCHHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 3699998753 0 1211 12345788888888888886643
No 33
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.66 E-value=0.0043 Score=64.84 Aligned_cols=101 Identities=23% Similarity=0.369 Sum_probs=57.5
Q ss_pred HHcCCCeeeecc---c------------ccccc--cCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhH
Q 036948 107 KEMNLDAYRFSI---S------------WSRIL--PNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALE 169 (514)
Q Consensus 107 ~~lG~~~~R~si---~------------Wsri~--P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~ 169 (514)
+.+|++.+||.| + |.|.+ +.. +|.+|+.+=+-=+.++++++++|+..++ ++-+..|.|+.
T Consensus 57 ~GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~--dg~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT 133 (384)
T PF14587_consen 57 KGLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPA--DGSYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMT 133 (384)
T ss_dssp -S---S-EEEE---STTTTTTSS--SSSTT----SB-T--TS-B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGS
T ss_pred CCceeeeeeeccccCCcccccCccCCCcccCCccccCC--CCCcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHh
Confidence 358999999988 3 33432 222 4788876555566799999999999765 77888998887
Q ss_pred hh---hCC-----CCChHHHHHHHHHHHHHHHHh---CCCcceEEeccCccc
Q 036948 170 DE---YGG-----FLSPRIVNDFRDYAQVCFREF---GDRVKHWITLNEPWT 210 (514)
Q Consensus 170 ~~---~gg-----w~~~~~~~~f~~ya~~~~~~~---gd~v~~W~t~NEp~~ 210 (514)
.. +|+ =+.++..+.|++|-..|+++| |=.+.+--++|||..
T Consensus 134 ~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 134 KNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred cCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 53 111 245688899999999999998 446899999999983
No 34
>PLN02905 beta-amylase
Probab=96.49 E-value=0.014 Score=63.89 Aligned_cols=101 Identities=17% Similarity=0.284 Sum_probs=78.5
Q ss_pred CchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccC----------
Q 036948 93 VDSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHW---------- 162 (514)
Q Consensus 93 ~d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~---------- 162 (514)
..+..-.+..++.||.+||..+-+.+=|.-+|+++ .++|||.| |+++++.+++.|++..+.|.-+
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~g--P~~YdWsg---Y~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~ 356 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHA--PQEYNWNG---YKRLFQMVRELKLKLQVVMSFHECGGNVGDDV 356 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCC--CCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCCCCCCcc
Confidence 45677789999999999999999999999999988 49999955 9999999999999977776433
Q ss_pred --CCchhhHhh--------h---CCCCC----------------hHHHHHHHHHHHHHHHHhCCC
Q 036948 163 --DTPQALEDE--------Y---GGFLS----------------PRIVNDFRDYAQVCFREFGDR 198 (514)
Q Consensus 163 --~~P~~l~~~--------~---ggw~~----------------~~~~~~f~~ya~~~~~~~gd~ 198 (514)
.||.|+.+. | .|..| +.-++.|.+|-+-...+|.+.
T Consensus 357 ~IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 357 CIPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred cccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 699998753 1 12222 233467777777777776553
No 35
>PLN02705 beta-amylase
Probab=96.48 E-value=0.013 Score=64.00 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=77.4
Q ss_pred chhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEec-c-----------
Q 036948 94 DSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLF-H----------- 161 (514)
Q Consensus 94 d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-h----------- 161 (514)
.+-.-.+..++.||.+||..+-+.+=|..+|+++ .++|||.| |+++++.+++.|++..+.|. |
T Consensus 265 ~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~--P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~ 339 (681)
T PLN02705 265 VDPEGVRQELSHMKSLNVDGVVVDCWWGIVEGWN--PQKYVWSG---YRELFNIIREFKLKLQVVMAFHEYGGNASGNVM 339 (681)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeeeeeEeecCC--CCcCCcHH---HHHHHHHHHHcCCeEEEEEEeeccCCCCCCccc
Confidence 3446688999999999999999999999999987 49999955 99999999999999777664 3
Q ss_pred CCCchhhHhh--------h---CCCCC----------------hHHHHHHHHHHHHHHHHhCCC
Q 036948 162 WDTPQALEDE--------Y---GGFLS----------------PRIVNDFRDYAQVCFREFGDR 198 (514)
Q Consensus 162 ~~~P~~l~~~--------~---ggw~~----------------~~~~~~f~~ya~~~~~~~gd~ 198 (514)
-.||.|+.+. | .|..| +.-++.|.+|.+-.-.+|.+.
T Consensus 340 IPLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 340 ISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred ccCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 2699998753 0 12222 233477777877777777664
No 36
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=96.24 E-value=0.082 Score=53.95 Aligned_cols=49 Identities=20% Similarity=0.400 Sum_probs=35.2
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEecc
Q 036948 97 HRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFH 161 (514)
Q Consensus 97 ~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h 161 (514)
+..+.|+.+||+||+|+.|+= -|-|.. | .+..+..|.+.||-+++.|..
T Consensus 53 ~~C~rDi~~l~~LgiNtIRVY----~vdp~~------n------Hd~CM~~~~~aGIYvi~Dl~~ 101 (314)
T PF03198_consen 53 EACKRDIPLLKELGINTIRVY----SVDPSK------N------HDECMSAFADAGIYVILDLNT 101 (314)
T ss_dssp HHHHHHHHHHHHHT-SEEEES-------TTS--------------HHHHHHHHHTT-EEEEES-B
T ss_pred HHHHHhHHHHHHcCCCEEEEE----EeCCCC------C------HHHHHHHHHhCCCEEEEecCC
Confidence 368999999999999999973 344443 1 678889999999999998854
No 37
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=96.23 E-value=0.03 Score=55.49 Aligned_cols=66 Identities=18% Similarity=0.278 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEeecCccCCCCCccCcccccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeecccccccc
Q 036948 400 GIWDLLLYIKRKYNNPLIYVTENGIDEVNDPKLTLEEALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFE 477 (514)
Q Consensus 400 Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~E 477 (514)
++...|..++++|++| |+|||-|+..... .-.+....+|+++-+..|. .---|.+|+..+.++..+
T Consensus 152 ~~~~~i~~~~~~~~kP-IWITEf~~~~~~~-------~~~~~~~~~fl~~~~~~ld----~~~~VeryawF~~~~~~~ 217 (239)
T PF11790_consen 152 DFKDYIDDLHNRYGKP-IWITEFGCWNGGS-------QGSDEQQASFLRQALPWLD----SQPYVERYAWFGFMNDGS 217 (239)
T ss_pred HHHHHHHHHHHHhCCC-EEEEeecccCCCC-------CCCHHHHHHHHHHHHHHHh----cCCCeeEEEecccccccC
Confidence 6888899999999976 9999999865211 2245566777766666554 447899999999544433
No 38
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.07 E-value=0.036 Score=56.48 Aligned_cols=105 Identities=13% Similarity=0.205 Sum_probs=63.6
Q ss_pred hHHHHHHHHHcCCCeeeecc--ccccc-c----cCCCC----C-----CCCChHHHHHHHHHHHHHHHCCCccEEEeccC
Q 036948 99 YKEDVRIIKEMNLDAYRFSI--SWSRI-L----PNGKL----S-----GGVNKEGIRFYNNLINELTANGIQPFVTLFHW 162 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si--~Wsri-~----P~~~~----~-----g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~ 162 (514)
++.-++..|+-|+|.+|+.+ .|... . |.... . .++|.+=.++.+++|+.|.+.||+|.+-+.|
T Consensus 32 ~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w- 110 (289)
T PF13204_consen 32 WEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW- 110 (289)
T ss_dssp HHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred HHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-
Confidence 44557889999999999999 55443 1 11100 0 2378888999999999999999999875554
Q ss_pred CCchhhHhhhCCCCC---hHHHHHHHHHHHHHHHHhCCCc-ceEEeccCc
Q 036948 163 DTPQALEDEYGGFLS---PRIVNDFRDYAQVCFREFGDRV-KHWITLNEP 208 (514)
Q Consensus 163 ~~P~~l~~~~ggw~~---~~~~~~f~~ya~~~~~~~gd~v-~~W~t~NEp 208 (514)
..| ..+ +.|-. .-..+.-.+|.+.|++||+..- ..|++-||-
T Consensus 111 g~~---~~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 111 GCP---YVP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---HH--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred CCc---ccc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 112 112 44543 3346778889999999999985 789998885
No 39
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.53 E-value=0.066 Score=59.17 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=87.9
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe--------ccCCCchhhH
Q 036948 98 RYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL--------FHWDTPQALE 169 (514)
Q Consensus 98 ~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--------~h~~~P~~l~ 169 (514)
.|++=|+.+|++|+|+...=+-|.-.||.+ |++|++|.-=..++|..+.++|+-+++-+ .+-.+|.||.
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~---g~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~ 126 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP---GKYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLR 126 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC---CcccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhh
Confidence 478889999999999999999999999998 99999997777889999999998765543 4788998887
Q ss_pred hhhCCC----CChHHHHHHHHHHHHHHHHh-------CCCcceEEeccCcc
Q 036948 170 DEYGGF----LSPRIVNDFRDYAQVCFREF-------GDRVKHWITLNEPW 209 (514)
Q Consensus 170 ~~~ggw----~~~~~~~~f~~ya~~~~~~~-------gd~v~~W~t~NEp~ 209 (514)
.. .|- .|+.+..++.+|.+.++... |.-|-.-++=||..
T Consensus 127 ~~-pg~~~Rt~nepfk~~~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG 176 (649)
T KOG0496|consen 127 NV-PGIVFRTDNEPFKAEMERWTTKIVPMMKKLFASQGGPIILVQIENEYG 176 (649)
T ss_pred hC-CceEEecCChHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEeechhh
Confidence 65 342 36788888999999888844 33466677778865
No 40
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.05 E-value=0.14 Score=47.87 Aligned_cols=104 Identities=16% Similarity=0.341 Sum_probs=67.9
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccc-----cCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhh
Q 036948 97 HRYKEDVRIIKEMNLDAYRFSISWSRIL-----PNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDE 171 (514)
Q Consensus 97 ~~~~eDi~lm~~lG~~~~R~si~Wsri~-----P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~ 171 (514)
.+|+++++.|+++|++++=+- |+... |..-..+.+.....+....+++++.+.||+++|+|+.. |.|..+
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~--~~~w~~- 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFD--PDYWDQ- 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCC--chhhhc-
Confidence 469999999999999988433 44332 32200012233445779999999999999999999763 445442
Q ss_pred hCCCCChH-HHHHHHHHHHHHHHHhCCC--cceEEeccCcc
Q 036948 172 YGGFLSPR-IVNDFRDYAQVCFREFGDR--VKHWITLNEPW 209 (514)
Q Consensus 172 ~ggw~~~~-~~~~f~~ya~~~~~~~gd~--v~~W~t~NEp~ 209 (514)
.+.+ -++.=..-++.+.++||.+ +.-|-+-.|+.
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 1111 2233345677788888885 45577777765
No 41
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.77 E-value=0.22 Score=59.28 Aligned_cols=91 Identities=18% Similarity=0.141 Sum_probs=64.5
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEec---cCCCchhhHhh
Q 036948 95 SYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLF---HWDTPQALEDE 171 (514)
Q Consensus 95 ~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~---h~~~P~~l~~~ 171 (514)
....+++||++||++|+|++|+| ..|.. . .+.+.|=+.||-++--.. |.-.|.. .
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-------p-------~fydlcDe~GilV~dE~~~e~hg~~~~~---~ 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH-------P-------LWYELCDRYGLYVVDEANIETHGMVPMN---R 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------H-------HHHHHHHHcCCEEEEecCccccCCcccc---C
Confidence 45778999999999999999995 34432 1 446778889997765432 2111110 0
Q ss_pred hCCCCChHHHHHHHHHHHHHHHHhCCC--cceEEeccCcc
Q 036948 172 YGGFLSPRIVNDFRDYAQVCFREFGDR--VKHWITLNEPW 209 (514)
Q Consensus 172 ~ggw~~~~~~~~f~~ya~~~~~~~gd~--v~~W~t~NEp~ 209 (514)
...+++..+.+.+=++.+++|..++ |..|...||+.
T Consensus 427 --~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 --LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred --CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1124667778888899999999886 78899999975
No 42
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.46 E-value=0.45 Score=56.78 Aligned_cols=90 Identities=16% Similarity=0.221 Sum_probs=63.5
Q ss_pred hhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEec---c-CCCchhhHhh
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLF---H-WDTPQALEDE 171 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~---h-~~~P~~l~~~ 171 (514)
...+++|+++||++|+|++|+| ..|.. . .+.+.|=+.||-++--.. | |.....+
T Consensus 354 ~e~~~~dl~lmK~~g~NavR~s-----HyP~~-------~-------~fydlcDe~GllV~dE~~~e~~g~~~~~~~--- 411 (1021)
T PRK10340 354 MDRVEKDIQLMKQHNINSVRTA-----HYPND-------P-------RFYELCDIYGLFVMAETDVESHGFANVGDI--- 411 (1021)
T ss_pred HHHHHHHHHHHHHCCCCEEEec-----CCCCC-------H-------HHHHHHHHCCCEEEECCcccccCccccccc---
Confidence 5789999999999999999996 34543 1 567788899997665321 1 2111000
Q ss_pred hCCC--CChHHHHHHHHHHHHHHHHhCCC--cceEEeccCcc
Q 036948 172 YGGF--LSPRIVNDFRDYAQVCFREFGDR--VKHWITLNEPW 209 (514)
Q Consensus 172 ~ggw--~~~~~~~~f~~ya~~~~~~~gd~--v~~W~t~NEp~ 209 (514)
.+ .++...+.|.+=++.+++|..++ |..|..-||..
T Consensus 412 --~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~~ 451 (1021)
T PRK10340 412 --SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNESG 451 (1021)
T ss_pred --ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 01 23456677888899999999886 67899999973
No 43
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=91.80 E-value=0.63 Score=53.85 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=67.0
Q ss_pred CCchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhh
Q 036948 92 AVDSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDE 171 (514)
Q Consensus 92 a~d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~ 171 (514)
.+-.+..+.+|+++||++|+|++|.| ..|+. . .+.+.|-+.||-++=-..+ +-
T Consensus 316 ~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-------~-------~~ydLcDelGllV~~Ea~~-----~~--- 368 (808)
T COG3250 316 RVTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-------E-------EFYDLCDELGLLVIDEAMI-----ET--- 368 (808)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-------H-------HHHHHHHHhCcEEEEecch-----hh---
Confidence 34446679999999999999999998 66665 1 4556677789976653322 11
Q ss_pred hCCCCChHHHHHHHHHHHHHHHHhCCC--cceEEeccCcc
Q 036948 172 YGGFLSPRIVNDFRDYAQVCFREFGDR--VKHWITLNEPW 209 (514)
Q Consensus 172 ~ggw~~~~~~~~f~~ya~~~~~~~gd~--v~~W~t~NEp~ 209 (514)
+++..+++..+...+=++.+++|-.++ |.+|..=||.+
T Consensus 369 ~~~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~ 408 (808)
T COG3250 369 HGMPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESG 408 (808)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhccCCCcEEEEecccccc
Confidence 234455677777888888999998775 78899999965
No 44
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.43 E-value=0.15 Score=54.46 Aligned_cols=110 Identities=15% Similarity=0.153 Sum_probs=79.4
Q ss_pred chHHHHHHHHHcCCCeeeecccc-cccccCCCCCCCCChHH-HHHHHHHHHHHHHCCCccEEEec----cCCCchhhHhh
Q 036948 98 RYKEDVRIIKEMNLDAYRFSISW-SRILPNGKLSGGVNKEG-IRFYNNLINELTANGIQPFVTLF----HWDTPQALEDE 171 (514)
Q Consensus 98 ~~~eDi~lm~~lG~~~~R~si~W-sri~P~~~~~g~~n~~g-l~~y~~~i~~l~~~gI~p~vtL~----h~~~P~~l~~~ 171 (514)
..+.|++.|+.+|++..|++|-= ..+--. .|..|.+. +.+.+.+++.+...+|+.++||. |+.--.|-..=
T Consensus 27 ei~~dle~a~~vg~k~lR~fiLDgEdc~d~---~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipw 103 (587)
T COG3934 27 EIKADLEPAGFVGVKDLRLFILDGEDCRDK---EGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPW 103 (587)
T ss_pred hhhcccccccCccceeEEEEEecCcchhhh---hceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeec
Confidence 34678999999999999999632 222222 26667665 88999999999999999999975 43322222110
Q ss_pred hCC------CCChHHHHHHHHHHHHHHHHhCCCc--ceEEeccCccc
Q 036948 172 YGG------FLSPRIVNDFRDYAQVCFREFGDRV--KHWITLNEPWT 210 (514)
Q Consensus 172 ~gg------w~~~~~~~~f~~ya~~~~~~~gd~v--~~W~t~NEp~~ 210 (514)
.|| ...+....-|.+|++.+++.|+..+ .-|..-|||.+
T Consensus 104 ag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 104 AGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 021 3356778889999999999998875 45999999765
No 45
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=84.79 E-value=1.7 Score=45.84 Aligned_cols=99 Identities=14% Similarity=0.204 Sum_probs=71.0
Q ss_pred HHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCC--hHHHHH
Q 036948 106 IKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLS--PRIVND 183 (514)
Q Consensus 106 m~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~--~~~~~~ 183 (514)
-+|+|++-.|.---|.=++.+ --+++ .++++++|.+...|+.=+.+-.||..+.--+..|.+=.. ....+.
T Consensus 14 ~~Ei~v~yi~~~~v~h~~~q~----~~~~~---t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl 86 (428)
T COG3664 14 DDEIQVNYIRRHGVWHVNAQK----LFYPF---TYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDL 86 (428)
T ss_pred hhhhceeeehhcceeeeeecc----ccCCh---HHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHH
Confidence 468899999888888833333 24677 889999999999994444455677777654443333222 257899
Q ss_pred HHHHHHHHHHHhCCC-c--ceEEeccCcccc
Q 036948 184 FRDYAQVCFREFGDR-V--KHWITLNEPWTY 211 (514)
Q Consensus 184 f~~ya~~~~~~~gd~-v--~~W~t~NEp~~~ 211 (514)
++++++.|+.++|-+ | -....+||||..
T Consensus 87 ~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ 117 (428)
T COG3664 87 IAAFLKHVIRRVGVEFVRKWPFYSPNEPNLL 117 (428)
T ss_pred HHHHHHHHHHHhChhheeecceeecCCCCcc
Confidence 999999999999964 2 336889999965
No 46
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=81.41 E-value=12 Score=37.06 Aligned_cols=73 Identities=18% Similarity=0.149 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHCCCccEEEecc--------------CCCchh--hH--------------hhhCC----CCChH---HH
Q 036948 139 RFYNNLINELTANGIQPFVTLFH--------------WDTPQA--LE--------------DEYGG----FLSPR---IV 181 (514)
Q Consensus 139 ~~y~~~i~~l~~~gI~p~vtL~h--------------~~~P~~--l~--------------~~~gg----w~~~~---~~ 181 (514)
+.++.+|+.-+++|..+|+||.= ...|.| =. .+.+| -.+|+ ..
T Consensus 24 ~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~~ 103 (239)
T PF12891_consen 24 DVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDNP 103 (239)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSSE
T ss_pred HHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCccH
Confidence 67899999999999999999841 122222 11 00011 11333 01
Q ss_pred HHHHHHHHHHHHHhCCC-----cceEEeccCcccc
Q 036948 182 NDFRDYAQVCFREFGDR-----VKHWITLNEPWTY 211 (514)
Q Consensus 182 ~~f~~ya~~~~~~~gd~-----v~~W~t~NEp~~~ 211 (514)
..-.+++..+..+||.. |++|..-|||.+-
T Consensus 104 ~y~~ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW 138 (239)
T PF12891_consen 104 VYMDEWVNYLVNKYGNASTNGGVKYYSLDNEPDLW 138 (239)
T ss_dssp EEHHHHHHHHHHHH--TTSTTS--EEEESS-GGGH
T ss_pred hHHHHHHHHHHHHHhccccCCCceEEEecCchHhh
Confidence 22344567777777765 9999999999864
No 47
>smart00642 Aamy Alpha-amylase domain.
Probab=80.47 E-value=3.8 Score=38.22 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=44.8
Q ss_pred chhhchHHHHHHHHHcCCCeeeeccccccccc--CC--CC---CCCCC--hHHHHHHHHHHHHHHHCCCccEEEe
Q 036948 94 DSYHRYKEDVRIIKEMNLDAYRFSISWSRILP--NG--KL---SGGVN--KEGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 94 d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P--~~--~~---~g~~n--~~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
..+....+-+.-+++||++++-++--+..... .. .. --.+| .-..+=++++|++|+++||++++.+
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 44667788888999999999988775544431 10 00 00111 1133558999999999999999975
No 48
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=77.40 E-value=2 Score=44.29 Aligned_cols=83 Identities=20% Similarity=0.303 Sum_probs=40.4
Q ss_pred HHHHHHHHHHH--hCCCeEEEeecCccCCCCCccCcccccChhhhHHHHHHHHHHHHHHHHcCCCE-----EEEeecccc
Q 036948 401 IWDLLLYIKRK--YNNPLIYVTENGIDEVNDPKLTLEEALVDNMRIDYYYRHLYFLQKAIRYGVKV-----KGYFAWSLL 473 (514)
Q Consensus 401 l~~~L~~~~~r--Y~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V-----~GY~~WSl~ 473 (514)
+.+.+...-++ |++.+|+|||.||+..+++.- . ..==+.+.+.+.+.+.+|.+. .-+++-+++
T Consensus 212 ~~da~~~a~~~~g~~~~~vvv~ETGWPs~G~~~a----~------~~nA~~~~~nl~~~~~~gt~~~~~~~~~~y~F~~F 281 (310)
T PF00332_consen 212 MVDAVYAAMEKLGFPNVPVVVGETGWPSAGDPGA----T------PENAQAYNQNLIKHVLKGTPLRPGNGIDVYIFEAF 281 (310)
T ss_dssp HHHHHHHHHHTTT-TT--EEEEEE---SSSSTTC----S------HHHHHHHHHHHHHHCCGBBSSSBSS---EEES-SB
T ss_pred HHHHHHHHHHHhCCCCceeEEeccccccCCCCCC----C------cchhHHHHHHHHHHHhCCCcccCCCCCeEEEEEEe
Confidence 34444444444 456679999999998764110 1 111234445555555566554 347778888
Q ss_pred ccccccCC--CCCceeEEEEcCC
Q 036948 474 DNFEWSAG--YTVRFGINYVDYK 494 (514)
Q Consensus 474 Dn~EW~~G--y~~rfGL~~VD~~ 494 (514)
|- .|..| .++.|||++-|.+
T Consensus 282 dE-~~K~~~~~E~~wGlf~~d~~ 303 (310)
T PF00332_consen 282 DE-NWKPGPEVERHWGLFYPDGT 303 (310)
T ss_dssp ---TTSSSSGGGGG--SB-TTSS
T ss_pred cC-cCCCCCcccceeeeECCCCC
Confidence 76 56655 5788999987764
No 49
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=75.38 E-value=15 Score=37.15 Aligned_cols=118 Identities=11% Similarity=0.138 Sum_probs=73.1
Q ss_pred CcccccccccCCCcccCCCCCCcCCchhhchHHHHHHHHHcCCCeeeecccccccccCCC--CCCCCChHHHHHHHHHHH
Q 036948 69 PSLWDTYTHRHPDKIKDGSNGDVAVDSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGK--LSGGVNKEGIRFYNNLIN 146 (514)
Q Consensus 69 ~s~Wd~~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~--~~g~~n~~gl~~y~~~i~ 146 (514)
.+.|+-|... .+. ..+..+.-.+..+++=|+.++++|+..+=+...|+.-.+... ....... ....++++
T Consensus 9 k~~W~Ww~~~-~~~----~~~~~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~---~dl~elv~ 80 (273)
T PF10566_consen 9 KAAWSWWSMH-NGK----GVGFKHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPD---FDLPELVD 80 (273)
T ss_dssp EEEECTCCCC-TTS----SBSS-BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT-----HHHHHH
T ss_pred eEEEeecccC-CCC----CCCCcCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCc---cCHHHHHH
Confidence 4677777653 111 112234446888999999999999999999999997332210 0011111 34679999
Q ss_pred HHHHCCCccEEEeccCC------CchhhHhh---------------hCCCCChHHHHHHHHHHHHHHHH
Q 036948 147 ELTANGIQPFVTLFHWD------TPQALEDE---------------YGGFLSPRIVNDFRDYAQVCFRE 194 (514)
Q Consensus 147 ~l~~~gI~p~vtL~h~~------~P~~l~~~---------------~ggw~~~~~~~~f~~ya~~~~~~ 194 (514)
..+++|+.++|-.+|-+ +=.-+.+. |-+-.+...++.+.+.++.++++
T Consensus 81 Ya~~KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~i~~~AA~~ 149 (273)
T PF10566_consen 81 YAKEKGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYEDILEDAAEY 149 (273)
T ss_dssp HHHHTT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999999888766 22112111 11234567888899988888875
No 50
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=74.25 E-value=24 Score=36.13 Aligned_cols=88 Identities=18% Similarity=0.408 Sum_probs=61.5
Q ss_pred hhchHHHHHHHHHcCCCeeeecc--cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhC
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSI--SWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYG 173 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si--~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~g 173 (514)
..||.+--++++++|||+.-+.= .=+++.-.. -++-..++-+.++..||++.+++ .|.-|.-| |
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~~~Lt~~---------~l~~v~~lAdvfRpYGIkv~LSv-nFasP~~l----g 121 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANPKLLTPE---------YLDKVARLADVFRPYGIKVYLSV-NFASPIEL----G 121 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--CGGGSTT---------THHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----T
T ss_pred hhHHHHHHHHHhhcCCceEEecccccChhhcCHH---------HHHHHHHHHHHHhhcCCEEEEEe-eccCCccc----C
Confidence 56889999999999999987643 112222221 24557799999999999999998 56777654 4
Q ss_pred C-----CCChHHHHHHHHHHHHHHHHhCC
Q 036948 174 G-----FLSPRIVNDFRDYAQVCFREFGD 197 (514)
Q Consensus 174 g-----w~~~~~~~~f~~ya~~~~~~~gd 197 (514)
| -++++++.++.+=++.+.++..|
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4 46789999999999999999866
No 51
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=72.81 E-value=11 Score=33.90 Aligned_cols=60 Identities=10% Similarity=0.033 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCeeeeccc--ccc-cccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEecc
Q 036948 101 EDVRIIKEMNLDAYRFSIS--WSR-ILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFH 161 (514)
Q Consensus 101 eDi~lm~~lG~~~~R~si~--Wsr-i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h 161 (514)
+=++.||++|+|+.-+... +-- -.|.....-....+ -+.+.++|++|+++||++++-+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 3368999999999999432 211 12332101122233 377999999999999999886543
No 52
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=70.35 E-value=18 Score=37.20 Aligned_cols=98 Identities=18% Similarity=0.314 Sum_probs=64.5
Q ss_pred hhhchHHHHHHHHHcCCCeeeeccc-------------ccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe--
Q 036948 95 SYHRYKEDVRIIKEMNLDAYRFSIS-------------WSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL-- 159 (514)
Q Consensus 95 ~y~~~~eDi~lm~~lG~~~~R~si~-------------Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL-- 159 (514)
+-...++=++.|+++|+|++=+.+. |++..+.. .|. + .|.+-+..+|++++++||++..-+
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~--~~~-~-pg~DpL~~~I~eaHkrGlevHAW~~~ 92 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGK--QGK-D-PGFDPLEFMIEEAHKRGLEVHAWFRV 92 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCC--CCC-C-CCccHHHHHHHHHHHcCCEEEEEEEe
Confidence 3455778899999999998766553 33333221 011 1 134568899999999999976543
Q ss_pred --cc-------CCCchhhHhh-------h----C--CCCC---hHHHHHHHHHHHHHHHHhC
Q 036948 160 --FH-------WDTPQALEDE-------Y----G--GFLS---PRIVNDFRDYAQVCFREFG 196 (514)
Q Consensus 160 --~h-------~~~P~~l~~~-------~----g--gw~~---~~~~~~f~~ya~~~~~~~g 196 (514)
.. -..|.|+..+ + + -|+| |++.+...+-++.++++|.
T Consensus 93 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 93 GFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred ecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 11 1346665421 1 1 1555 5899999999999999994
No 53
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=67.64 E-value=19 Score=40.15 Aligned_cols=58 Identities=12% Similarity=0.240 Sum_probs=40.8
Q ss_pred chhhchHHHHHHHHHcCCCeeeeccc--------c-------cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEE
Q 036948 94 DSYHRYKEDVRIIKEMNLDAYRFSIS--------W-------SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVT 158 (514)
Q Consensus 94 d~y~~~~eDi~lm~~lG~~~~R~si~--------W-------sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 158 (514)
+-+.-..+-+.-+|+||++++-+.=- | -.+.|.= |. .+=+++||++|+++||++|+.
T Consensus 108 G~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~---G~-----~~e~k~lV~~aH~~Gi~VilD 179 (542)
T TIGR02402 108 GTFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY---GG-----PDDLKALVDAAHGLGLGVILD 179 (542)
T ss_pred CCHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc---CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 34566677799999999999876431 2 1112221 32 344899999999999999997
Q ss_pred e
Q 036948 159 L 159 (514)
Q Consensus 159 L 159 (514)
+
T Consensus 180 ~ 180 (542)
T TIGR02402 180 V 180 (542)
T ss_pred E
Confidence 5
No 54
>PLN02361 alpha-amylase
Probab=67.46 E-value=13 Score=39.86 Aligned_cols=68 Identities=12% Similarity=0.233 Sum_probs=47.1
Q ss_pred chhhchHHHHHHHHHcCCCeeeecccccccccCCCCC---CCCC--hHHHHHHHHHHHHHHHCCCccEEEe--cc
Q 036948 94 DSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLS---GGVN--KEGIRFYNNLINELTANGIQPFVTL--FH 161 (514)
Q Consensus 94 d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~---g~~n--~~gl~~y~~~i~~l~~~gI~p~vtL--~h 161 (514)
.+|....+-+.-+++||++++=++=...-..+.|... -.+| +-..+=++.||++|+++||++|+.+ .|
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH 100 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINH 100 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEcccc
Confidence 4899999999999999999998776544333332100 0011 0122448899999999999999974 45
No 55
>PRK12313 glycogen branching enzyme; Provisional
Probab=64.42 E-value=25 Score=39.87 Aligned_cols=94 Identities=18% Similarity=0.258 Sum_probs=60.5
Q ss_pred hhhchHHHH-HHHHHcCCCeeeeccc--------c-------cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEE
Q 036948 95 SYHRYKEDV-RIIKEMNLDAYRFSIS--------W-------SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVT 158 (514)
Q Consensus 95 ~y~~~~eDi-~lm~~lG~~~~R~si~--------W-------sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 158 (514)
-|.-..+.+ .-+|+||++++=+.=- | -.|.|.= |. .+=++++|++|+++||++|+.
T Consensus 168 ~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~---Gt-----~~d~k~lv~~~H~~Gi~VilD 239 (633)
T PRK12313 168 SYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY---GT-----PEDFMYLVDALHQNGIGVILD 239 (633)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC---CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 355666774 9999999999875432 2 1122221 33 234899999999999999998
Q ss_pred e--ccCCCch----hhH--------h---h-hCCC-------CChHHHHHHHHHHHHHHHHhC
Q 036948 159 L--FHWDTPQ----ALE--------D---E-YGGF-------LSPRIVNDFRDYAQVCFREFG 196 (514)
Q Consensus 159 L--~h~~~P~----~l~--------~---~-~ggw-------~~~~~~~~f~~ya~~~~~~~g 196 (514)
+ .|..... ++. + . +.+| .|+++.+.+.+-++.-+++||
T Consensus 240 ~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 240 WVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred ECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 4 4543211 110 0 0 0123 367888888888888888874
No 56
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=64.13 E-value=6.4 Score=39.16 Aligned_cols=58 Identities=19% Similarity=0.379 Sum_probs=39.6
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCC--C-----C--ChHHHHHHHHHHHHHHHCCCccEEEe
Q 036948 99 YKEDVRIIKEMNLDAYRFSISWSRILPNGKLSG--G-----V--NKEGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g--~-----~--n~~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
..+-|+-+|+|||+++-++=-+. .|... -| . + ..-..+=+++||++|+++||++|+.+
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~--~~~~~-~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFE--SPNGY-HGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EE--SSSST-TTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccc--ccccc-ccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 45668899999999998886544 22110 01 0 1 12234558999999999999999986
No 57
>PRK05402 glycogen branching enzyme; Provisional
Probab=61.73 E-value=36 Score=39.40 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=59.7
Q ss_pred hhhchHHHH-HHHHHcCCCeeeeccc--------cc-------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEE
Q 036948 95 SYHRYKEDV-RIIKEMNLDAYRFSIS--------WS-------RILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVT 158 (514)
Q Consensus 95 ~y~~~~eDi-~lm~~lG~~~~R~si~--------Ws-------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 158 (514)
-|.-..+.+ .-+|+||++++=+.=- |. .|.|.= |. .+=+++||++|+++||++|+.
T Consensus 263 ~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~---Gt-----~~dfk~lV~~~H~~Gi~VilD 334 (726)
T PRK05402 263 SYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF---GT-----PDDFRYFVDACHQAGIGVILD 334 (726)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc---CC-----HHHHHHHHHHHHHCCCEEEEE
Confidence 345555664 7889999999866542 21 122221 32 344889999999999999998
Q ss_pred e--ccCCCc-----------hhhHh-----hhCC-------CCChHHHHHHHHHHHHHHHHhC
Q 036948 159 L--FHWDTP-----------QALED-----EYGG-------FLSPRIVNDFRDYAQVCFREFG 196 (514)
Q Consensus 159 L--~h~~~P-----------~~l~~-----~~gg-------w~~~~~~~~f~~ya~~~~~~~g 196 (514)
+ .|+... .+... .+.. +.++++.+.+.+-++.-+++|+
T Consensus 335 ~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 335 WVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred ECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 5 355321 11110 0112 3467888888888888888874
No 58
>PLN00196 alpha-amylase; Provisional
Probab=60.54 E-value=15 Score=39.57 Aligned_cols=68 Identities=13% Similarity=0.145 Sum_probs=45.5
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCCCCC---CCCC---hHHHHHHHHHHHHHHHCCCccEEEe--ccC
Q 036948 95 SYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLS---GGVN---KEGIRFYNNLINELTANGIQPFVTL--FHW 162 (514)
Q Consensus 95 ~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~---g~~n---~~gl~~y~~~i~~l~~~gI~p~vtL--~h~ 162 (514)
+|....+.+.-+++||+++.=++=......+.|--. -.+| +-..+=+++||++++++||++|+.. .|-
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~ 117 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHR 117 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCc
Confidence 466688999999999999998886544332222100 0111 1112348999999999999999974 454
No 59
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=58.56 E-value=52 Score=34.22 Aligned_cols=87 Identities=15% Similarity=0.202 Sum_probs=63.3
Q ss_pred CCcCCchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhh
Q 036948 89 GDVAVDSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQAL 168 (514)
Q Consensus 89 ~~~a~d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l 168 (514)
+=+|.=||+ |+.-+..+ +.|+..+|+. | |.+-. -+..+.+++.++++|+-.=++..|-.++.-+
T Consensus 74 PlVADIHFd-~~lAl~a~-~~g~dkiRIN-------P-----GNig~--~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~ 137 (346)
T TIGR00612 74 PLVADIHFD-YRLAALAM-AKGVAKVRIN-------P-----GNIGF--RERVRDVVEKARDHGKAMRIGVNHGSLERRL 137 (346)
T ss_pred CEEEeeCCC-cHHHHHHH-HhccCeEEEC-------C-----CCCCC--HHHHHHHHHHHHHCCCCEEEecCCCCCcHHH
Confidence 345666765 45544443 5699999874 2 33322 2678999999999999999999999999999
Q ss_pred HhhhCCCCChHHHHHHHHHHHHH
Q 036948 169 EDEYGGFLSPRIVNDFRDYAQVC 191 (514)
Q Consensus 169 ~~~~ggw~~~~~~~~f~~ya~~~ 191 (514)
.++||+-..+..++--.++++.+
T Consensus 138 ~~kyg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 138 LEKYGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Confidence 99987645555666666666654
No 60
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=58.15 E-value=18 Score=40.21 Aligned_cols=59 Identities=15% Similarity=0.255 Sum_probs=42.0
Q ss_pred CchhhchHHHHHHHHHcCCCeeeeccccc--------------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEE
Q 036948 93 VDSYHRYKEDVRIIKEMNLDAYRFSISWS--------------RILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVT 158 (514)
Q Consensus 93 ~d~y~~~~eDi~lm~~lG~~~~R~si~Ws--------------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 158 (514)
..-+.-..+-+.-+++||++++=++=-.. +|.|.- | ..+=++.+|++++++||++|+.
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~---G-----t~~~~~~lv~~ah~~gi~vilD 94 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLF---G-----TMADFEELVSEAKKRNIKIMLD 94 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCccc---C-----CHHHHHHHHHHHHHCCCEEEEE
Confidence 34456677889999999999986654322 222221 2 2345889999999999999998
Q ss_pred e
Q 036948 159 L 159 (514)
Q Consensus 159 L 159 (514)
+
T Consensus 95 ~ 95 (543)
T TIGR02403 95 M 95 (543)
T ss_pred E
Confidence 5
No 61
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=57.20 E-value=24 Score=37.10 Aligned_cols=94 Identities=13% Similarity=0.226 Sum_probs=56.2
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCC-CChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCC
Q 036948 100 KEDVRIIKEMNLDAYRFSI-SWS-RILPNGKLSGG-VNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFL 176 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~ 176 (514)
+|.++.|+++|++.+.+++ +-+ ++...- |+ .+. +-..+.|+.+++.|+..+-.-.-+++|.
T Consensus 99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l---~R~~~~---~~~~~ai~~l~~~g~~~v~~dli~GlPg---------- 162 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGLQAWQNSLLKYL---GRIHTF---EEFLENYKLARKLGFNNINVDLMFGLPN---------- 162 (374)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHc---CCCCCH---HHHHHHHHHHHHcCCCcEEEEeecCCCC----------
Confidence 5789999999999666666 222 233221 22 232 4577889999999998553333556663
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEeccCcccc
Q 036948 177 SPRIVNDFRDYAQVCFREFGDRVKHWITLNEPWTY 211 (514)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~~ 211 (514)
++.+.|.+-.+.+.+.=-++|..+...-+|+..
T Consensus 163 --qt~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~ 195 (374)
T PRK05799 163 --QTLEDWKETLEKVVELNPEHISCYSLIIEEGTP 195 (374)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccEecCCCH
Confidence 234556555666554333556555544577643
No 62
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=56.04 E-value=63 Score=36.59 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=59.7
Q ss_pred hhchHHHH-HHHHHcCCCeeeec-cccc--------------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe
Q 036948 96 YHRYKEDV-RIIKEMNLDAYRFS-ISWS--------------RILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 96 y~~~~eDi-~lm~~lG~~~~R~s-i~Ws--------------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
|.-..+.+ .-+|+||++++=+. |..+ .+.|.= |. .+=+++||++|+++||++|+.+
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~---Gt-----~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF---GT-----PDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc---CC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 55556675 88999999999883 3222 111111 22 2348899999999999999975
Q ss_pred c--cCCC-----------chhhHh-----hhCC-------CCChHHHHHHHHHHHHHHHHhC
Q 036948 160 F--HWDT-----------PQALED-----EYGG-------FLSPRIVNDFRDYAQVCFREFG 196 (514)
Q Consensus 160 ~--h~~~-----------P~~l~~-----~~gg-------w~~~~~~~~f~~ya~~~~~~~g 196 (514)
. |... |.+... .+.. +.++++.+.+.+-++..+++|+
T Consensus 227 V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 227 VPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred cccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 3 5431 111110 0011 2457888999999999999885
No 63
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.61 E-value=39 Score=36.73 Aligned_cols=113 Identities=15% Similarity=0.300 Sum_probs=71.9
Q ss_pred hhchHHHHHHHHHcCCCeeeec----ccccccccCCCC--------------------------CCCCCh----HHHHHH
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFS----ISWSRILPNGKL--------------------------SGGVNK----EGIRFY 141 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~s----i~Wsri~P~~~~--------------------------~g~~n~----~gl~~y 141 (514)
|.+|+..|+-|+-.|+|..=.- +-|-+|+-.-.+ .|.... .-+--=
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~lgl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~Lq 156 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGLGLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLLQ 156 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHcCCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHHH
Confidence 7899999999999999965433 235555433200 021111 012223
Q ss_pred HHHHHHHHHCCCccEEEeccCCCchhhHhhh--------CCCCC---------------hHHHHHHHHHHHHHHHHhCCC
Q 036948 142 NNLINELTANGIQPFVTLFHWDTPQALEDEY--------GGFLS---------------PRIVNDFRDYAQVCFREFGDR 198 (514)
Q Consensus 142 ~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~--------ggw~~---------------~~~~~~f~~ya~~~~~~~gd~ 198 (514)
.++|+.+++-||+|++..+---.|..|..-| +-|.+ |-+.+-=..|.+...++||.-
T Consensus 157 krIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~~ 236 (666)
T KOG2233|consen 157 KRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGGV 236 (666)
T ss_pred HHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCCc
Confidence 4899999999999999988888998887542 22332 234444456677788889962
Q ss_pred --cceEEeccCc
Q 036948 199 --VKHWITLNEP 208 (514)
Q Consensus 199 --v~~W~t~NEp 208 (514)
+-.==||||.
T Consensus 237 tniy~~DpFNE~ 248 (666)
T KOG2233|consen 237 TNIYSADPFNEI 248 (666)
T ss_pred ccccccCccccc
Confidence 2223578884
No 64
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=54.47 E-value=22 Score=38.78 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=45.2
Q ss_pred chhhchHHHHHHHHHcCCCeeeeccccccc--------ccCCCC-------CCCCCh--HHHHHHHHHHHHHHHCCCccE
Q 036948 94 DSYHRYKEDVRIIKEMNLDAYRFSISWSRI--------LPNGKL-------SGGVNK--EGIRFYNNLINELTANGIQPF 156 (514)
Q Consensus 94 d~y~~~~eDi~lm~~lG~~~~R~si~Wsri--------~P~~~~-------~g~~n~--~gl~~y~~~i~~l~~~gI~p~ 156 (514)
+.|.-..+-++-+++||+++.=++=...-. .|.... .|.+|. -..+=+++||++|+++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 456667888999999999999777643322 111100 001111 123448899999999999999
Q ss_pred EEe--ccCC
Q 036948 157 VTL--FHWD 163 (514)
Q Consensus 157 vtL--~h~~ 163 (514)
+.+ .|-.
T Consensus 99 ~D~V~NH~~ 107 (479)
T PRK09441 99 ADVVLNHKA 107 (479)
T ss_pred EEECccccc
Confidence 975 4643
No 65
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=53.83 E-value=24 Score=39.35 Aligned_cols=63 Identities=11% Similarity=0.305 Sum_probs=42.8
Q ss_pred CchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCC----------hHHHHHHHHHHHHHHHCCCccEEEe
Q 036948 93 VDSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVN----------KEGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 93 ~d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n----------~~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
.+-+.-..+.++-+++||+++.=++=-+.. |.. ...++ .-..+=++.||++++++||++|+.+
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~--~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQV--DNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCC--CCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 344666778899999999999877653321 211 01111 1123458999999999999999975
No 66
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=52.99 E-value=31 Score=40.56 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=42.1
Q ss_pred hhchHHHHHHHHHcCCCeeeecc---------------cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSI---------------SWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si---------------~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
+....+-+.-+++||+++.=+|= .+.+|.|.- |. .+=+++++++++++||++|+.+
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l---Gt-----~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL---GG-----EEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC---CC-----HHHHHHHHHHHHHCCCEEEEEe
Confidence 45578889999999999875543 344555553 32 2448999999999999999975
No 67
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=51.31 E-value=9 Score=31.56 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=13.8
Q ss_pred HHHHhCC--CcceEEeccC-cc
Q 036948 191 CFREFGD--RVKHWITLNE-PW 209 (514)
Q Consensus 191 ~~~~~gd--~v~~W~t~NE-p~ 209 (514)
++++||+ +|.+|-++|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4667776 7999999999 66
No 68
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=51.23 E-value=36 Score=34.30 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCeeeeccccc-ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEE
Q 036948 100 KEDVRIIKEMNLDAYRFSISWS-RILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVT 158 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Ws-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 158 (514)
+|.+++||++|++.+-++++-+ .+.+.- .+..+. +.+.+.++.++++||.+.++
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i--~~~~s~---~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNI--ISTHTY---DDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhc--cCCCCH---HHHHHHHHHHHHcCCEEEEe
Confidence 7999999999999999999821 133332 122233 55778999999999985443
No 69
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=51.03 E-value=49 Score=33.39 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=39.3
Q ss_pred CcCCchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEec
Q 036948 90 DVAVDSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLF 160 (514)
Q Consensus 90 ~~a~d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 160 (514)
|-.|-.=..|..|+++++.-+. ..|. . | -|.. -..+++..+.+.|++.+++++
T Consensus 56 dGtCKSa~~~~sDLe~l~~~t~-~IR~-------Y------~-sDCn---~le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 56 DGTCKSADQVASDLELLASYTH-SIRT-------Y------G-SDCN---TLENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCcCHHHHHhHHHHhccCCc-eEEE-------e------e-ccch---hhhhhHHHHHhcCceEEEEEe
Confidence 3477777889999999999876 4443 1 2 2332 266899999999999999884
No 70
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=49.60 E-value=36 Score=37.17 Aligned_cols=55 Identities=16% Similarity=0.343 Sum_probs=43.7
Q ss_pred hhchHHH-----HHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCc
Q 036948 96 YHRYKED-----VRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTP 165 (514)
Q Consensus 96 y~~~~eD-----i~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P 165 (514)
|.+|.+| ++++++-|++.+|..-.. |. ++-....|+.+++.|....+++.+-+.|
T Consensus 99 y~~ypddvv~~fv~~a~~~Gidi~Rifd~l-------------nd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp 158 (468)
T PRK12581 99 YRHYADDIVDKFISLSAQNGIDVFRIFDAL-------------ND--PRNIQQALRAVKKTGKEAQLCIAYTTSP 158 (468)
T ss_pred ccCCcchHHHHHHHHHHHCCCCEEEEcccC-------------CC--HHHHHHHHHHHHHcCCEEEEEEEEEeCC
Confidence 7778888 999999999999987533 21 2346688899999999988888887766
No 71
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=49.43 E-value=94 Score=33.13 Aligned_cols=87 Identities=13% Similarity=0.249 Sum_probs=55.9
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCC
Q 036948 97 HRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFL 176 (514)
Q Consensus 97 ~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~ 176 (514)
..|++||++++++||+.|=+.|. -+ ..+.. +....+++.+.+.|.+.++++ |+... +-|.
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig----~~-----d~~~~---~~l~~a~~AA~~~gFKlf~Sf---D~~~~-----~~~~ 76 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG----SS-----DSWQP---DQLADAYQAAEAVGFKLFFSF---DMNSL-----GPWS 76 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc----cC-----CcccH---HHHHHHHHHHHhcCCEEEEEe---cccCC-----CCCC
Confidence 45999999999999999999996 11 22344 457788999999998877765 44311 2222
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEeccCcccc
Q 036948 177 SPRIVNDFRDYAQVCFREFGDRVKHWITLNEPWTY 211 (514)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~~ 211 (514)
. +-...+++.|+.+-.+...-+=|-+.
T Consensus 77 ~--------~~~~~~i~~y~~~pa~~~~~Gkp~VS 103 (386)
T PF03659_consen 77 Q--------DELIALIKKYAGHPAYFRYDGKPVVS 103 (386)
T ss_pred H--------HHHHHHHHHHcCChhHEeECCeEEEE
Confidence 2 22334455666666665544444433
No 72
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=49.37 E-value=66 Score=32.80 Aligned_cols=84 Identities=12% Similarity=0.222 Sum_probs=56.3
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCC----chhhHhhhCCCCCh
Q 036948 103 VRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDT----PQALEDEYGGFLSP 178 (514)
Q Consensus 103 i~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~----P~~l~~~~ggw~~~ 178 (514)
++.+++-+-+---++..|-.|-|++...+.. ..++++.++++|+++++++..++- +.-+.. --.++
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g~~~~~~-------~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~ 85 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADGTLTGLP-------DERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNP 85 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCCCCCCCC-------CHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCH
Confidence 6777777777777888999998887433333 348999999999999999976541 111111 12355
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 036948 179 RIVNDFRDYAQVCFREFG 196 (514)
Q Consensus 179 ~~~~~f~~ya~~~~~~~g 196 (514)
..++.|++=+-.+++++|
T Consensus 86 ~~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 86 EARQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 666777666666666664
No 73
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=49.33 E-value=44 Score=32.84 Aligned_cols=81 Identities=12% Similarity=-0.026 Sum_probs=54.3
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChH
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPR 179 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~ 179 (514)
+++++++++.|++.+|++++-+-..-.-. .+.=....++-..+.++.+++.|+++.+.+....-| ..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~-~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~ 143 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKN-LNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KT 143 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CC
Confidence 89999999999999999997663211110 011112345668899999999999999998665544 12
Q ss_pred HHHHHHHHHHHHHH
Q 036948 180 IVNDFRDYAQVCFR 193 (514)
Q Consensus 180 ~~~~f~~ya~~~~~ 193 (514)
..+.+.++++.+.+
T Consensus 144 ~~~~l~~~~~~~~~ 157 (265)
T cd03174 144 DPEYVLEVAKALEE 157 (265)
T ss_pred CHHHHHHHHHHHHH
Confidence 34445666666543
No 74
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=49.00 E-value=31 Score=39.96 Aligned_cols=94 Identities=13% Similarity=0.206 Sum_probs=58.8
Q ss_pred chhhchH-HHHHHHHHcCCCeeeecccccc---------------cccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEE
Q 036948 94 DSYHRYK-EDVRIIKEMNLDAYRFSISWSR---------------ILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFV 157 (514)
Q Consensus 94 d~y~~~~-eDi~lm~~lG~~~~R~si~Wsr---------------i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v 157 (514)
..|.-+. +-+.-+|+||++++-+.=-... +.|.- |. .+=++.+|++|+++||++|+
T Consensus 247 gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~---Gt-----p~dlk~LVd~aH~~GI~Vil 318 (758)
T PLN02447 247 NSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS---GT-----PEDLKYLIDKAHSLGLRVLM 318 (758)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc---CC-----HHHHHHHHHHHHHCCCEEEE
Confidence 4455543 4489999999999977642221 11111 22 23488999999999999999
Q ss_pred Eec--cCCC-------------chhhHhhhCC----C-------CChHHHHHHHHHHHHHHHHh
Q 036948 158 TLF--HWDT-------------PQALEDEYGG----F-------LSPRIVNDFRDYAQVCFREF 195 (514)
Q Consensus 158 tL~--h~~~-------------P~~l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~ 195 (514)
.+. |+.- +.|+.....| | .++++.+.+.+=++.-+++|
T Consensus 319 DvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey 382 (758)
T PLN02447 319 DVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEY 382 (758)
T ss_pred EeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHh
Confidence 864 3221 2233211011 2 24677788888888888877
No 75
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=48.99 E-value=65 Score=32.93 Aligned_cols=79 Identities=15% Similarity=0.162 Sum_probs=51.0
Q ss_pred HHHHHcCCCeeeeccc--ccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCC----
Q 036948 104 RIIKEMNLDAYRFSIS--WSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLS---- 177 (514)
Q Consensus 104 ~lm~~lG~~~~R~si~--Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~---- 177 (514)
+.+++.|++.+-++.. -..-.|.- .|............-|..|+++|.+++|.+ |||..
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w--~g~~~~~~~~~~~~~i~~lk~~G~kViiS~-------------GG~~g~~~~ 83 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAW--GGSYPLDQGGWIKSDIAALRAAGGDVIVSF-------------GGASGTPLA 83 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccC--CCCCCcccchhHHHHHHHHHHcCCeEEEEe-------------cCCCCCccc
Confidence 5677889998887753 22222221 011110012345678999999999999988 55543
Q ss_pred --hHHHHHHHHHHHHHHHHhCC
Q 036948 178 --PRIVNDFRDYAQVCFREFGD 197 (514)
Q Consensus 178 --~~~~~~f~~ya~~~~~~~gd 197 (514)
+..++.|++....+.++|+=
T Consensus 84 ~~~~~~~~~~~a~~~~i~~y~~ 105 (294)
T cd06543 84 TSCTSADQLAAAYQKVIDAYGL 105 (294)
T ss_pred cCcccHHHHHHHHHHHHHHhCC
Confidence 35778888888888888854
No 76
>PLN02784 alpha-amylase
Probab=48.57 E-value=41 Score=39.39 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=46.5
Q ss_pred chhhchHHHHHHHHHcCCCeeeecccccccccCCCCC-C--CCCh--HHHHHHHHHHHHHHHCCCccEEEe
Q 036948 94 DSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLS-G--GVNK--EGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 94 d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~-g--~~n~--~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
.+|....+.+.-+++||++++=++=...-..+.|... . .+|. -..+=++.+|++|+++||++|+.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5789999999999999999998776544443333100 0 0111 122448899999999999999974
No 77
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=47.24 E-value=1.3e+02 Score=31.35 Aligned_cols=86 Identities=19% Similarity=0.246 Sum_probs=61.3
Q ss_pred cCCchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHh
Q 036948 91 VAVDSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALED 170 (514)
Q Consensus 91 ~a~d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~ 170 (514)
+|-=||+ |+- .....+.|+..+|+. | |.+-.+ +....+++.++++||-.=++..|-.+..-+.+
T Consensus 78 VaDiHf~-~rl-a~~~~~~g~~k~RIN-------P-----GNig~~--~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ 141 (361)
T COG0821 78 VADIHFD-YRL-ALEAAECGVDKVRIN-------P-----GNIGFK--DRVREVVEAAKDKGIPIRIGVNAGSLEKRLLE 141 (361)
T ss_pred EEEeecc-HHH-HHHhhhcCcceEEEC-------C-----cccCcH--HHHHHHHHHHHHcCCCEEEecccCchhHHHHH
Confidence 4444555 333 333456778888864 3 433332 36889999999999999999999999999999
Q ss_pred hhCCCCChHHHHHHHHHHHHHH
Q 036948 171 EYGGFLSPRIVNDFRDYAQVCF 192 (514)
Q Consensus 171 ~~ggw~~~~~~~~f~~ya~~~~ 192 (514)
+||+-..+..++--.++|+.+-
T Consensus 142 ky~~pt~ealveSAl~~a~~~e 163 (361)
T COG0821 142 KYGGPTPEALVESALEHAELLE 163 (361)
T ss_pred HhcCCCHHHHHHHHHHHHHHHH
Confidence 9987655556665566666543
No 78
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=46.94 E-value=1.2e+02 Score=30.74 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCc
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTP 165 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P 165 (514)
+.|++++++.|++..++.++=|...-.... +.--.+.++-..++++.+++.|+++.+++-+|+.|
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~-~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~ 141 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQL-RKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNG 141 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHH-CcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCC
Confidence 568999999999999999855544333210 22335678889999999999999999999987744
No 79
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=46.53 E-value=83 Score=33.08 Aligned_cols=95 Identities=14% Similarity=0.220 Sum_probs=56.4
Q ss_pred HHHHHHHHHcCCCeeeecc-cc-cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCC
Q 036948 100 KEDVRIIKEMNLDAYRFSI-SW-SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLS 177 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si-~W-sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~ 177 (514)
++.+++|+++|++.+-+++ += .++...- ....+. +-..+.++.+++.|+..+-.-.-+++|.
T Consensus 100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l--~r~~~~---~~~~~~i~~l~~~g~~~v~~dli~GlPg----------- 163 (377)
T PRK08599 100 KEKLQVLKDSGVNRISLGVQTFNDELLKKI--GRTHNE---EDVYEAIANAKKAGFDNISIDLIYALPG----------- 163 (377)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCCH---HHHHHHHHHHHHcCCCcEEEeeecCCCC-----------
Confidence 6889999999999888888 32 3444332 122333 4577899999999997543333456663
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcceEEeccCcccc
Q 036948 178 PRIVNDFRDYAQVCFREFGDRVKHWITLNEPWTY 211 (514)
Q Consensus 178 ~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~~ 211 (514)
++.+.|.+=++.+.+.=-+.|......-+|+..
T Consensus 164 -qt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~ 196 (377)
T PRK08599 164 -QTIEDFKESLAKALALDIPHYSAYSLILEPKTV 196 (377)
T ss_pred -CCHHHHHHHHHHHHccCCCEEeeeceeecCCCh
Confidence 123445444444433223345444444566543
No 80
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=45.93 E-value=1.3e+02 Score=33.28 Aligned_cols=97 Identities=19% Similarity=0.172 Sum_probs=51.1
Q ss_pred HHHHHHHHhCCCeEEEeecCccCCCCCccCcccccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeecccc-c---ccccc
Q 036948 404 LLLYIKRKYNNPLIYVTENGIDEVNDPKLTLEEALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLL-D---NFEWS 479 (514)
Q Consensus 404 ~L~~~~~rY~~ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~-D---n~EW~ 479 (514)
.|..++++|++..|+-||...+...... ...+-.-.|. .++...+...+..| +.||+.|-|+ | ..-|.
T Consensus 319 ~l~~~h~~~P~k~l~~TE~~~g~~~~~~---~~~~g~w~~~---~~y~~~ii~~lnn~--~~gw~~WNl~LD~~GGP~~~ 390 (496)
T PF02055_consen 319 ALDQVHNKFPDKFLLFTEACCGSWNWDT---SVDLGSWDRA---ERYAHDIIGDLNNW--VSGWIDWNLALDENGGPNWV 390 (496)
T ss_dssp HHHHHHHHSTTSEEEEEEEESS-STTS----SS-TTHHHHH---HHHHHHHHHHHHTT--EEEEEEEESEBETTS---TT
T ss_pred HHHHHHHHCCCcEEEeeccccCCCCccc---ccccccHHHH---HHHHHHHHHHHHhh--ceeeeeeeeecCCCCCCccc
Confidence 4678999998888999999766532100 0001111232 23444555666676 5799999985 2 12243
Q ss_pred CCCCCceeEEEEcCCCCccccccchHHHHHHH
Q 036948 480 AGYTVRFGINYVDYKDGLKRYPKLSARWFKKF 511 (514)
Q Consensus 480 ~Gy~~rfGL~~VD~~~~~~R~pK~S~~~y~~i 511 (514)
.++... .+-||-+ +.+-+..+.+|..+++
T Consensus 391 ~n~~d~--~iivd~~-~~~~~~~p~yY~~gHf 419 (496)
T PF02055_consen 391 GNFCDA--PIIVDSD-TGEFYKQPEYYAMGHF 419 (496)
T ss_dssp ---B----SEEEEGG-GTEEEE-HHHHHHHHH
T ss_pred CCCCCc--eeEEEcC-CCeEEEcHHHHHHHHH
Confidence 333332 3447765 4555555667766554
No 81
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=45.75 E-value=28 Score=38.72 Aligned_cols=56 Identities=21% Similarity=0.401 Sum_probs=39.7
Q ss_pred hhchHHHHHHHHHcCCCeeeecccc--------------cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSISW--------------SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si~W--------------sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
..-..+-+.-+++|||++.=++=-. -+|.|.= | ..+=++++|++++++||++|+.+
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~---G-----t~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEF---G-----TIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhh---C-----CHHHHHHHHHHHHHCCCEEEEEe
Confidence 4556777899999999988665322 1222221 2 23448899999999999999975
No 82
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=45.12 E-value=59 Score=32.35 Aligned_cols=59 Identities=24% Similarity=0.186 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
.+|++++.+.|++..|+.++.|.+.-.... +.=-.++++-..++++.+++.|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~-~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKL-GKDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 789999999999999999988766433211 22234677889999999999999877654
No 83
>PRK14705 glycogen branching enzyme; Provisional
Probab=44.97 E-value=1.1e+02 Score=37.68 Aligned_cols=100 Identities=16% Similarity=0.220 Sum_probs=58.0
Q ss_pred hhchHHH-HHHHHHcCCCeeeecc--------cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEec--cCCC
Q 036948 96 YHRYKED-VRIIKEMNLDAYRFSI--------SWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLF--HWDT 164 (514)
Q Consensus 96 y~~~~eD-i~lm~~lG~~~~R~si--------~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~--h~~~ 164 (514)
|.-..+. |.-+|+||++++-+.= +|- -.|.+...=....-..+=++.+|++|+++||.+|+.+. |+..
T Consensus 764 ~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH~~~ 842 (1224)
T PRK14705 764 YRELAKELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAHFPK 842 (1224)
T ss_pred hHHHHHHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 4444445 6889999999986542 231 11111000000011233488999999999999999853 5421
Q ss_pred chhhHhhh----------------CC-------CCChHHHHHHHHHHHHHHHHhC
Q 036948 165 PQALEDEY----------------GG-------FLSPRIVNDFRDYAQVCFREFG 196 (514)
Q Consensus 165 P~~l~~~~----------------gg-------w~~~~~~~~f~~ya~~~~~~~g 196 (514)
=.|....+ .. +.++++.+.+.+=|..-+++|+
T Consensus 843 d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 843 DSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred chhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 11211011 11 3456888888888888899884
No 84
>PRK09505 malS alpha-amylase; Reviewed
Probab=43.85 E-value=39 Score=38.74 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=43.5
Q ss_pred hhchHHHHHHHHHcCCCeeeecccccccc-----------c----CCCC-C--CCCC--hHHHHHHHHHHHHHHHCCCcc
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSISWSRIL-----------P----NGKL-S--GGVN--KEGIRFYNNLINELTANGIQP 155 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si~Wsri~-----------P----~~~~-~--g~~n--~~gl~~y~~~i~~l~~~gI~p 155 (514)
+.-..+-+.-+++||+++.=++=-...+. | .+.- . ..+| +-..+=++.||++++++||++
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~V 308 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRI 308 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34466778999999999998875443321 1 0000 0 0111 113455899999999999999
Q ss_pred EEEe--ccCC
Q 036948 156 FVTL--FHWD 163 (514)
Q Consensus 156 ~vtL--~h~~ 163 (514)
|+.+ .|..
T Consensus 309 ilD~V~NH~~ 318 (683)
T PRK09505 309 LFDVVMNHTG 318 (683)
T ss_pred EEEECcCCCc
Confidence 9974 4644
No 85
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=43.29 E-value=49 Score=32.32 Aligned_cols=52 Identities=13% Similarity=0.443 Sum_probs=39.9
Q ss_pred hhchHHHHHHHHHcCCCeeee----------------------cccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCC
Q 036948 96 YHRYKEDVRIIKEMNLDAYRF----------------------SISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGI 153 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~----------------------si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI 153 (514)
--.-+.=++||++||.++..| ++ | +||.| | +|. +.+..++.-+++.|+
T Consensus 134 iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG---G-Idl---~Nf~~I~~i~ldaGv 203 (236)
T TIGR03581 134 IVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG---G-IDL---DNFEEIVQIALDAGV 203 (236)
T ss_pred eeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC---C-ccH---HhHHHHHHHHHHcCC
Confidence 344567799999999998876 23 3 57775 3 665 778899999999999
Q ss_pred ccEE
Q 036948 154 QPFV 157 (514)
Q Consensus 154 ~p~v 157 (514)
+-++
T Consensus 204 ~kvi 207 (236)
T TIGR03581 204 EKVI 207 (236)
T ss_pred Ceec
Confidence 8664
No 86
>PRK14706 glycogen branching enzyme; Provisional
Probab=43.10 E-value=93 Score=35.49 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=55.6
Q ss_pred hhchHHHH-HHHHHcCCCeeeecccccccccCCCCC-C--CCC-------hHHHHHHHHHHHHHHHCCCccEEEec--cC
Q 036948 96 YHRYKEDV-RIIKEMNLDAYRFSISWSRILPNGKLS-G--GVN-------KEGIRFYNNLINELTANGIQPFVTLF--HW 162 (514)
Q Consensus 96 y~~~~eDi-~lm~~lG~~~~R~si~Wsri~P~~~~~-g--~~n-------~~gl~~y~~~i~~l~~~gI~p~vtL~--h~ 162 (514)
|.-..+.+ .-+|+||++++-+.=-=. .|... . | ..| .-..+=++.+|++|+++||++|+.+. |+
T Consensus 166 y~~~~~~l~~ylk~lG~t~velmPv~e--~~~~~-~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~ 242 (639)
T PRK14706 166 YRELAHRLGEYVTYMGYTHVELLGVME--HPFDG-SWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHF 242 (639)
T ss_pred HHHHHHHHHHHHHHcCCCEEEccchhc--CCCCC-CCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 44444443 668999999977542100 01100 0 0 001 01123488999999999999999753 43
Q ss_pred C-----------Cchh-hHhhhCC----C-------CChHHHHHHHHHHHHHHHHhC
Q 036948 163 D-----------TPQA-LEDEYGG----F-------LSPRIVNDFRDYAQVCFREFG 196 (514)
Q Consensus 163 ~-----------~P~~-l~~~~gg----w-------~~~~~~~~f~~ya~~~~~~~g 196 (514)
. .|.+ ..+...| | .++++.+.+.+=|+.-+++|+
T Consensus 243 ~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 243 PTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred CcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 2 1211 0000011 2 257888888898999898884
No 87
>COG2951 MltB Membrane-bound lytic murein transglycosylase B [Cell envelope biogenesis, outer membrane]
Probab=43.03 E-value=30 Score=36.15 Aligned_cols=96 Identities=25% Similarity=0.274 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhCCCe-----EEEeecCccCCCCCccCcc----cccChhhhHHHHHHHHHHHHHHHHcC-CC---EE
Q 036948 399 RGIWDLLLYIKRKYNNPL-----IYVTENGIDEVNDPKLTLE----EALVDNMRIDYYYRHLYFLQKAIRYG-VK---VK 465 (514)
Q Consensus 399 ~Gl~~~L~~~~~rY~~pp-----I~ITENG~~~~~~~~~~~~----~~i~D~~Ri~yl~~hl~~l~~Ai~dG-v~---V~ 465 (514)
.--..+|+++-++|+-|+ |+=.|.|++.........+ =...|.+|..|.++.|.+.++-+++| ++ ++
T Consensus 110 ~~~~~~l~~~e~~yGVp~~ii~aiWg~Et~fG~~~g~~~v~~ALaTLa~~~~rR~~~f~~eL~aaL~ii~~gdv~~~~~~ 189 (343)
T COG2951 110 AQYAAALARAERRYGVPAPILVAIWGMETGFGRVMGKFRVLDALATLAFADPRRAGFFRDELIAALKIIQDGDVDPLALK 189 (343)
T ss_pred HHHHHHHHHHHHHhCCCchheeeeehhhcccccccCccchHHHHhhhcccccchhhhhHHHHHHHHHHHhhcCCCccccc
Confidence 345568999999999763 5557999886532211111 12348999999999999988888877 77 55
Q ss_pred EEeeccccccccccCCCCC------ceeEEEEcCCCCccccccch
Q 036948 466 GYFAWSLLDNFEWSAGYTV------RFGINYVDYKDGLKRYPKLS 504 (514)
Q Consensus 466 GY~~WSl~Dn~EW~~Gy~~------rfGL~~VD~~~~~~R~pK~S 504 (514)
| +|+..+.. -|=.|.||++.+.+|-++.|
T Consensus 190 G----------SwAGAmGq~QFmPss~~~YaVD~DGDG~~Diw~s 224 (343)
T COG2951 190 G----------SWAGAMGQTQFMPSSYLKYAVDGDGDGHRDIWNS 224 (343)
T ss_pred c----------hhhhccCCcccCcHHHHHhhhcCCCCCccCCccC
Confidence 5 56544333 56677899987778877733
No 88
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=42.81 E-value=56 Score=34.39 Aligned_cols=61 Identities=16% Similarity=0.063 Sum_probs=46.5
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEec
Q 036948 99 YKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLF 160 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 160 (514)
.++|++.+.+.|++.+|+.++-|.+.-.... +.-..+.++-..+.++.+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKL-KKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 4899999999999999998877666433210 222345677888999999999999888764
No 89
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=42.68 E-value=63 Score=33.64 Aligned_cols=112 Identities=16% Similarity=0.397 Sum_probs=57.3
Q ss_pred hhchHHHHHHHHHcCCCeeeecc----cccccccCC--------------------------CCCCCCC----hHHHHHH
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSI----SWSRILPNG--------------------------KLSGGVN----KEGIRFY 141 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si----~Wsri~P~~--------------------------~~~g~~n----~~gl~~y 141 (514)
|+||++.|+-|+=-|||..=--+ -|-|++-+= .-.|... .+-.+-=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 78899999999999998532211 233333221 0002211 1123445
Q ss_pred HHHHHHHHHCCCccEEEeccCCCchhhHhhh--------CCCCC---h----HHHHHHHHHHHHHH----HHhCCCcceE
Q 036948 142 NNLINELTANGIQPFVTLFHWDTPQALEDEY--------GGFLS---P----RIVNDFRDYAQVCF----REFGDRVKHW 202 (514)
Q Consensus 142 ~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~--------ggw~~---~----~~~~~f~~ya~~~~----~~~gd~v~~W 202 (514)
+++++++++.||+|++--+---.|..|.+++ |.|.+ + ..-+.|.+.++... +.||. -.++
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P~dplF~~i~~~F~~~q~~~yG~-~~~Y 176 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDPTDPLFAEIAKLFYEEQIKLYGT-DHIY 176 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-SS--HHHHHHHHHHHHHHHHH----SEE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCCCCchHHHHHHHHHHHHHHhcCC-Ccee
Confidence 6999999999999999988888899888775 22322 1 12356666665554 55772 3333
Q ss_pred --EeccCc
Q 036948 203 --ITLNEP 208 (514)
Q Consensus 203 --~t~NEp 208 (514)
=+|||-
T Consensus 177 ~~D~FnE~ 184 (333)
T PF05089_consen 177 AADPFNEG 184 (333)
T ss_dssp E--TTTTS
T ss_pred CCCccCCC
Confidence 367774
No 90
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=42.28 E-value=2e+02 Score=30.58 Aligned_cols=91 Identities=15% Similarity=0.302 Sum_probs=58.5
Q ss_pred CcCCchhhchHHHHHHHHHc-CCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccE-EEeccCCCchh
Q 036948 90 DVAVDSYHRYKEDVRIIKEM-NLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPF-VTLFHWDTPQA 167 (514)
Q Consensus 90 ~~a~d~y~~~~eDi~lm~~l-G~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~-vtL~h~~~P~~ 167 (514)
+.+.+-.++ .+|++.++.+ ++. .++++. .|.+ ...| +..+.+.++++||+.. ++...|..|.+
T Consensus 34 g~~r~~~e~-~~d~~~v~~L~~~~-~~v~lH----~~~d---~~~d------~~~~~~~l~~~GL~v~~i~p~~f~~~~~ 98 (378)
T TIGR02635 34 GAARNVFEK-IEDAALVHRLTGIC-PTVALH----IPWD---RVED------YEELARYAEELGLKIGAINPNLFQDDDY 98 (378)
T ss_pred CCCCCHHHH-HHHHHHHHhhcCCC-Cceeec----cCCc---cccC------HHHHHHHHHHcCCceeeeeCCccCCccc
Confidence 344444444 7888888888 555 676661 2222 1122 6678888999999987 77777766654
Q ss_pred hHhhhCCCCCh--HHHHHHHHHHHHHH---HHhCCC
Q 036948 168 LEDEYGGFLSP--RIVNDFRDYAQVCF---REFGDR 198 (514)
Q Consensus 168 l~~~~ggw~~~--~~~~~f~~ya~~~~---~~~gd~ 198 (514)
++|.+.|+ ++.+.-.++++.|. +.+|..
T Consensus 99 ---~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~ 131 (378)
T TIGR02635 99 ---KFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSK 131 (378)
T ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34788876 55566666666654 567763
No 91
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=41.85 E-value=1.4e+02 Score=31.10 Aligned_cols=71 Identities=13% Similarity=0.188 Sum_probs=44.6
Q ss_pred HHHHHHHHHCCCccEEEec-cCCCchhhHh--hhCCCCChHHHHHHHHHHHHHHHHhCCCcceEEeccCccccccc
Q 036948 142 NNLINELTANGIQPFVTLF-HWDTPQALED--EYGGFLSPRIVNDFRDYAQVCFREFGDRVKHWITLNEPWTYSVG 214 (514)
Q Consensus 142 ~~~i~~l~~~gI~p~vtL~-h~~~P~~l~~--~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~~~~~ 214 (514)
+.|++.|++.|++.++.+. +...-..+.. .+-.|.||++.+.|.+..+.+.+ .|-. -+|+=.|||.++...
T Consensus 67 ~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv~-~~W~DmnEp~~~~~~ 140 (332)
T cd06601 67 KEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGLE-FVWQDMTTPAIMPSY 140 (332)
T ss_pred HHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCCc-eeecCCCCcccccCC
Confidence 5799999999999766542 1110000000 02247889999998777655443 3322 379999999987653
No 92
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=41.81 E-value=73 Score=34.88 Aligned_cols=55 Identities=24% Similarity=0.304 Sum_probs=41.1
Q ss_pred hhchHHH-----HHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCc
Q 036948 96 YHRYKED-----VRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTP 165 (514)
Q Consensus 96 y~~~~eD-----i~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P 165 (514)
|..|.+| ++++.+.|++.+|+..+-+.+ +-....++.+++.|+.+..++.+-.-|
T Consensus 89 ~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 89 YRHYADDVVELFVKKVAEYGLDIIRIFDALNDI---------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred cccccchhhHHHHHHHHHCCcCEEEEEEeCCHH---------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 5667888 999999999999999865432 225567788888898888777654445
No 93
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.53 E-value=1.3e+02 Score=31.14 Aligned_cols=89 Identities=18% Similarity=0.248 Sum_probs=62.5
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHH
Q 036948 103 VRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVN 182 (514)
Q Consensus 103 i~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~ 182 (514)
.+.+|++|.++..|=+=|. |++ +..+|..-.+|.+++.++|++++|-=++-+..++.+. .+. .+.++..
T Consensus 111 ~~rike~GadavK~Llyy~---pD~--~~~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~~--~d~----~~~~yak 179 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDE--PDEINEQKKAYIERIGSECVAEDIPFFLEILTYDEKI--ADN----GSVEYAK 179 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCC--CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCcc--ccc----ccHHHHh
Confidence 6889999999999998886 665 2458888889999999999999999888877766543 111 1122333
Q ss_pred HHHHHHHHHHHHhCC---CcceE
Q 036948 183 DFRDYAQVCFREFGD---RVKHW 202 (514)
Q Consensus 183 ~f~~ya~~~~~~~gd---~v~~W 202 (514)
..-+.+-..++.|++ .|+.|
T Consensus 180 ~kP~~V~~a~kefs~~~~gvDVl 202 (324)
T PRK12399 180 VKPHKVNEAMKVFSKPRFGVDVL 202 (324)
T ss_pred hChHHHHHHHHHhccCCCCCcEE
Confidence 333344446777765 45555
No 94
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=41.04 E-value=77 Score=35.80 Aligned_cols=92 Identities=16% Similarity=0.104 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCc----hhhHhh----
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTP----QALEDE---- 171 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P----~~l~~~---- 171 (514)
++|+++.++.|++.+|+..+.+-+ +-....|+.+++.|....+++.+-+.| ..+.+.
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~---------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l 164 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDP---------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQL 164 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcH---------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHH
Confidence 444999999999999999644322 234566777777777665555443334 222111
Q ss_pred ------------hCCCCChHHHHHHHHHHHHHHHHhCCCcceEEeccCccc
Q 036948 172 ------------YGGFLSPRIVNDFRDYAQVCFREFGDRVKHWITLNEPWT 210 (514)
Q Consensus 172 ------------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~ 210 (514)
..|-..|. ...+.++.+-+++ +..-..++.|-..+
T Consensus 165 ~~~Gad~i~i~Dt~G~l~P~---~~~~lv~~lk~~~-~~pi~~H~Hnt~Gl 211 (593)
T PRK14040 165 EDMGVDSLCIKDMAGLLKPY---AAYELVSRIKKRV-DVPLHLHCHATTGL 211 (593)
T ss_pred HHcCCCEEEECCCCCCcCHH---HHHHHHHHHHHhc-CCeEEEEECCCCch
Confidence 13444443 3444455555666 33345778887764
No 95
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.84 E-value=1.4e+02 Score=31.11 Aligned_cols=90 Identities=22% Similarity=0.311 Sum_probs=63.6
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHH
Q 036948 102 DVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIV 181 (514)
Q Consensus 102 Di~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~ 181 (514)
+.+.+|++|.++..|=+=|. |++ +-.+|..-.+|.+++.++|++++|-=++-+..++.+. .+. .+++..
T Consensus 112 s~~rike~GadavK~Llyy~---pD~--~~ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~~--~d~----~~~eya 180 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDG--DEEINDQKQAYIERIGSECTAEDIPFFLELLTYDERI--SDN----NSAAYA 180 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCC--CHHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCcc--ccc----ccHHHH
Confidence 56899999999999998876 665 2457888889999999999999999888887775443 111 223333
Q ss_pred HHHHHHHHHHHHHhCC---CcceE
Q 036948 182 NDFRDYAQVCFREFGD---RVKHW 202 (514)
Q Consensus 182 ~~f~~ya~~~~~~~gd---~v~~W 202 (514)
...-+.+-..++.|++ .|+.|
T Consensus 181 k~kP~~V~~amkefs~~~~gvDVl 204 (329)
T PRK04161 181 KLKPHKVNGAMKVFSDKRFGVDVL 204 (329)
T ss_pred hhChHHHHHHHHHhccCCCCCcEE
Confidence 3333345556677775 45555
No 96
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=39.72 E-value=95 Score=31.94 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=69.2
Q ss_pred HHHHHHHHHcCCC-eeeecc-cc-ccccc-CCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCC
Q 036948 100 KEDVRIIKEMNLD-AYRFSI-SW-SRILP-NGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGF 175 (514)
Q Consensus 100 ~eDi~lm~~lG~~-~~R~si-~W-sri~P-~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw 175 (514)
+|.+++|+++|++ .+-+++ +- .++.- .- .-..+. +-+.+.++.++++||.+.+.+. +.+|..
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~i--nKg~t~---~~~~~ai~~~~~~Gi~v~~~~i-~G~P~~-------- 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSI--NKGSTF---EDFIRAAELARKYGAGVKAYLL-FKPPFL-------- 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhh--CCCCCH---HHHHHHHHHHHHcCCcEEEEEE-ecCCCC--------
Confidence 6889999999998 577776 32 22331 11 011233 4578999999999998655542 345521
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCcceEEeccCcccccccccCCCCCCC
Q 036948 176 LSPRIVNDFRDYAQVCFREFGDRVKHWITLNEPWTYSVGGYGDGSLAP 223 (514)
Q Consensus 176 ~~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~~~~~~y~~G~~~P 223 (514)
.-.+.++.+.+.++.+.. +++.|.+..+.=+|+.....-|..|.|.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 112677778777777765 45888887777677754444455666655
No 97
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=39.18 E-value=2e+02 Score=30.79 Aligned_cols=92 Identities=14% Similarity=0.251 Sum_probs=61.7
Q ss_pred hchHHHHHHHHHcCCCeeeecccccc-----------cccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe------
Q 036948 97 HRYKEDVRIIKEMNLDAYRFSISWSR-----------ILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL------ 159 (514)
Q Consensus 97 ~~~~eDi~lm~~lG~~~~R~si~Wsr-----------i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL------ 159 (514)
....+-++.++++|++.+-+.--|.. .+|+. .+| ..| ...+++.+++.|+++=+=+
T Consensus 58 ~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~---~kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 58 EKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP---KKF-PNG---LKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT---TTS-TTH---HHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred HHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh---hhh-CCc---HHHHHHHHHHCCCeEEEEecccccc
Confidence 34566789999999999888889964 34443 222 124 6689999999999965522
Q ss_pred ----ccCCCchhhHhhhCC-------------CCChHHHHHHHHHHHHHHHHhC
Q 036948 160 ----FHWDTPQALEDEYGG-------------FLSPRIVNDFRDYAQVCFREFG 196 (514)
Q Consensus 160 ----~h~~~P~~l~~~~gg-------------w~~~~~~~~f~~ya~~~~~~~g 196 (514)
..-..|.|+... ++ ..+|++.++..+-...+++.+|
T Consensus 131 ~~S~l~~~hPdw~l~~-~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g 183 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRD-PGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG 183 (394)
T ss_dssp SSSCHCCSSBGGBTCC-TTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHhCccceeec-CCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC
Confidence 123578887532 11 4567888988888888888886
No 98
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=39.11 E-value=24 Score=27.34 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=32.1
Q ss_pred cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCC
Q 036948 121 SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWD 163 (514)
Q Consensus 121 sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~ 163 (514)
|++-|.+ +.=-.++++...+++..|.++|| +++.|++-+
T Consensus 19 s~l~p~~---~~d~~kaldiCaeIL~cLE~R~i-sWl~LFqlt 57 (64)
T PF03511_consen 19 SYLAPKE---GADSLKALDICAEILGCLEKRKI-SWLVLFQLT 57 (64)
T ss_pred HhcCccc---ccccHHHHHHHHHHHHHHHhCCC-cHHHhhhcc
Confidence 6788887 55567899999999999999999 687776643
No 99
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=38.86 E-value=97 Score=31.52 Aligned_cols=86 Identities=12% Similarity=0.053 Sum_probs=60.9
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEecc-CCCchhhHhhhCCCCC
Q 036948 99 YKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFH-WDTPQALEDEYGGFLS 177 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h-~~~P~~l~~~~ggw~~ 177 (514)
-.+|+++..+.|++.+++.++=|...-... -+.=-.+.++-..++|+.++++|+++..++.. |..|. .|..+
T Consensus 81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n-~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~~ 153 (287)
T PRK05692 81 NLKGLEAALAAGADEVAVFASASEAFSQKN-INCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEVP 153 (287)
T ss_pred CHHHHHHHHHcCCCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCCC
Confidence 489999999999999999985544322211 02233467888999999999999998887764 55552 34333
Q ss_pred hHHHHHHHHHHHHHHHH
Q 036948 178 PRIVNDFRDYAQVCFRE 194 (514)
Q Consensus 178 ~~~~~~f~~ya~~~~~~ 194 (514)
.+.+.++++.+.+.
T Consensus 154 ---~~~~~~~~~~~~~~ 167 (287)
T PRK05692 154 ---PEAVADVAERLFAL 167 (287)
T ss_pred ---HHHHHHHHHHHHHc
Confidence 56777788877654
No 100
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=38.83 E-value=50 Score=33.14 Aligned_cols=60 Identities=22% Similarity=0.199 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEec
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLF 160 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 160 (514)
.+|++++.+.|++.+|+.++=|...-... .+.=-.+.++...+++..+++.|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~-~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREAS-HGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 67999999999999999885444322211 0222346688899999999999999998874
No 101
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=38.67 E-value=1.2e+02 Score=31.79 Aligned_cols=57 Identities=28% Similarity=0.413 Sum_probs=45.2
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCC
Q 036948 103 VRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDT 164 (514)
Q Consensus 103 i~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~ 164 (514)
++.++++|.+++-+-+-|. |+. ...+|..-+++..++.++|.+.||.-++-+.-++.
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~--~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~ 168 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDE--DDAINDRKHAFVERVGAECRANDIPFFLEPLTYDG 168 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCc--chHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCC
Confidence 5779999999999999887 553 13457788899999999999999998886433333
No 102
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=37.10 E-value=61 Score=37.23 Aligned_cols=57 Identities=18% Similarity=0.362 Sum_probs=38.9
Q ss_pred HHHHHHcCCCeeee----cccccccccCCCCC--------------CC--CCh---HHHHHHHHHHHHHHHCCCccEEEe
Q 036948 103 VRIIKEMNLDAYRF----SISWSRILPNGKLS--------------GG--VNK---EGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 103 i~lm~~lG~~~~R~----si~Wsri~P~~~~~--------------g~--~n~---~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
|+-+|+|||+++.+ ++.+.+..++.... +. .+. ..+.=++.||++|+++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999985 34444444322100 11 112 246669999999999999999975
No 103
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=36.80 E-value=1.4e+02 Score=31.30 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCC-CChHHHHHHHHHHHHHHHCCCccEEEeccCCCch
Q 036948 100 KEDVRIIKEMNLDAYRFSI-SWS-RILPNGKLSGG-VNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQ 166 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~ 166 (514)
++.++.|+++|++.+.+++ +-+ ++...- |+ .+. +-+.+.|+.+++.|+.++-.-.-+++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l---gR~~~~---~~~~~ai~~l~~~G~~~v~~dli~GlPg 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL---GRQHSA---KNIAPAIETALKSGIENISLDLMYGLPL 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh---CCCCCH---HHHHHHHHHHHHcCCCeEEEeccCCCCC
Confidence 6889999999999777777 343 333332 22 233 4577899999999998654434556663
No 104
>PRK12568 glycogen branching enzyme; Provisional
Probab=36.38 E-value=55 Score=37.81 Aligned_cols=95 Identities=13% Similarity=0.288 Sum_probs=58.2
Q ss_pred hhchHHH-HHHHHHcCCCeeeecc--------cccc-----cccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEec-
Q 036948 96 YHRYKED-VRIIKEMNLDAYRFSI--------SWSR-----ILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLF- 160 (514)
Q Consensus 96 y~~~~eD-i~lm~~lG~~~~R~si--------~Wsr-----i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~- 160 (514)
|.-..+. |.-+|+||++++-+.= +|.= ..|++. -|. .+=++.+|++|+++||++|+.+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~-~G~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTAR-HGS-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcc-cCC-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 5455555 6889999999885542 3420 112211 033 34489999999999999999753
Q ss_pred -cCCCc----------hhhH--h-h---hCC-------CCChHHHHHHHHHHHHHHHHhC
Q 036948 161 -HWDTP----------QALE--D-E---YGG-------FLSPRIVNDFRDYAQVCFREFG 196 (514)
Q Consensus 161 -h~~~P----------~~l~--~-~---~gg-------w~~~~~~~~f~~ya~~~~~~~g 196 (514)
|+..- .... + + +.. +.++++.+.+.+=++.-+++|+
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 43221 1010 0 0 112 3457888888888888888874
No 105
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=35.87 E-value=2e+02 Score=29.23 Aligned_cols=107 Identities=16% Similarity=0.242 Sum_probs=65.0
Q ss_pred chHHHHHHHHHcCC--CeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccC---CCchhhHh--
Q 036948 98 RYKEDVRIIKEMNL--DAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHW---DTPQALED-- 170 (514)
Q Consensus 98 ~~~eDi~lm~~lG~--~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~---~~P~~l~~-- 170 (514)
...+-++.+++.|| +++=+.+.|.+-.-.++ =.+|.+-.--...||+.|+++|+++++.+.-+ +.|..-+-
T Consensus 25 ~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~--f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~ 102 (308)
T cd06593 25 EVNEFADGMRERNLPCDVIHLDCFWMKEFQWCD--FEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAE 102 (308)
T ss_pred HHHHHHHHHHHcCCCeeEEEEecccccCCccee--eEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHH
Confidence 35777899999994 45666777874321110 12333323335799999999999987766422 22221110
Q ss_pred h-----------h--------CC---CCChHHHHHHHHHHHHHHHHhCCCcc-eEEeccCcc
Q 036948 171 E-----------Y--------GG---FLSPRIVNDFRDYAQVCFREFGDRVK-HWITLNEPW 209 (514)
Q Consensus 171 ~-----------~--------gg---w~~~~~~~~f~~ya~~~~~~~gd~v~-~W~t~NEp~ 209 (514)
+ + ++ +.||+..+.|.+..+.+.+ +| |+ +|+=+||+.
T Consensus 103 ~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 103 KGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred CCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 0 11 6788999999888876554 44 44 466688873
No 106
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=35.58 E-value=91 Score=32.80 Aligned_cols=79 Identities=16% Similarity=0.076 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChH
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPR 179 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~ 179 (514)
.+|++.+.+.|++.+|+.++-|.+.-.... +.=-.+.++-..+.++.++++|+++.++... .+..+
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed-----------~~r~~-- 140 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKL-RKDRAWVLERLARLVSFARDRGLFVSVGGED-----------ASRAD-- 140 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHh-CcCHHHHHHHHHHHHHHHHhCCCEEEEeecC-----------CCCCC--
Confidence 799999999999999999977654333211 2223457788899999999999987765421 23333
Q ss_pred HHHHHHHHHHHHHH
Q 036948 180 IVNDFRDYAQVCFR 193 (514)
Q Consensus 180 ~~~~f~~ya~~~~~ 193 (514)
.+.+.++++.+.+
T Consensus 141 -~~~l~~~~~~~~~ 153 (365)
T TIGR02660 141 -PDFLVELAEVAAE 153 (365)
T ss_pred -HHHHHHHHHHHHH
Confidence 4556666666544
No 107
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=35.56 E-value=1.9e+02 Score=30.42 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=53.7
Q ss_pred HHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHH
Q 036948 107 KEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRD 186 (514)
Q Consensus 107 ~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ 186 (514)
.+.|+...|+ -| |.+-. --+..+.+++.++++|+-.=++..|-.++..+.++||+-.-+..++--.+
T Consensus 98 ~~~G~~~iRI-------NP-----GNig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~ 164 (360)
T PRK00366 98 AEAGADALRI-------NP-----GNIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALR 164 (360)
T ss_pred HHhCCCEEEE-------CC-----CCCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHH
Confidence 3678999865 34 33311 02568899999999999999999999999999999865344556666666
Q ss_pred HHHHH
Q 036948 187 YAQVC 191 (514)
Q Consensus 187 ya~~~ 191 (514)
+++.+
T Consensus 165 ~~~~l 169 (360)
T PRK00366 165 HAKIL 169 (360)
T ss_pred HHHHH
Confidence 66654
No 108
>PRK10785 maltodextrin glucosidase; Provisional
Probab=35.45 E-value=58 Score=36.72 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=39.4
Q ss_pred hchHHHHHHHHHcCCCeeeeccc-------------ccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe
Q 036948 97 HRYKEDVRIIKEMNLDAYRFSIS-------------WSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 97 ~~~~eDi~lm~~lG~~~~R~si~-------------Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
.-..+-+.-+|+|||++.=++=- +-+|.|.= | ..+=+++++++++++||++|+.+
T Consensus 179 ~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~---G-----t~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 179 DGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL---G-----GDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEE
Confidence 44667789999999999877642 22222221 2 22448899999999999999975
No 109
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=35.31 E-value=1.6e+02 Score=30.52 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=48.8
Q ss_pred HHHHHHHHHCCCccEEEeccCCC-----chhhHhh------------------------hCCCCChHHHHHHHHHHHHHH
Q 036948 142 NNLINELTANGIQPFVTLFHWDT-----PQALEDE------------------------YGGFLSPRIVNDFRDYAQVCF 192 (514)
Q Consensus 142 ~~~i~~l~~~gI~p~vtL~h~~~-----P~~l~~~------------------------~ggw~~~~~~~~f~~ya~~~~ 192 (514)
..||+.|+++|++.++.+.-+.. |..-+-+ +-.+.||+.++.|.+..+.+.
T Consensus 67 ~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06603 67 EKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDK 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHh
Confidence 57999999999998877654432 2211100 013778999999999988776
Q ss_pred HHhCC-CcceEEeccCccccc
Q 036948 193 REFGD-RVKHWITLNEPWTYS 212 (514)
Q Consensus 193 ~~~gd-~v~~W~t~NEp~~~~ 212 (514)
...+. -.-+|+=.|||.++.
T Consensus 147 ~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 147 YKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred hcccCCCceEEeccCCccccC
Confidence 64332 346799999998754
No 110
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=35.27 E-value=1.1e+02 Score=32.01 Aligned_cols=86 Identities=9% Similarity=-0.012 Sum_probs=61.8
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEecc-CCCchhhHhhhCCCCC
Q 036948 99 YKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFH-WDTPQALEDEYGGFLS 177 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h-~~~P~~l~~~~ggw~~ 177 (514)
-.+|++++.+.|++.+.+.++=|...-.... +.=-.+.++-+.++++.++++|+++.+++.. |..|. .|-.+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~-~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~~ 195 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNI-NCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPVP 195 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCCC
Confidence 4799999999999999999865555443211 3334678888999999999999998877754 55553 33333
Q ss_pred hHHHHHHHHHHHHHHHH
Q 036948 178 PRIVNDFRDYAQVCFRE 194 (514)
Q Consensus 178 ~~~~~~f~~ya~~~~~~ 194 (514)
++.+.++++.+.+.
T Consensus 196 ---~~~l~~~~~~~~~~ 209 (347)
T PLN02746 196 ---PSKVAYVAKELYDM 209 (347)
T ss_pred ---HHHHHHHHHHHHHc
Confidence 56677777776553
No 111
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=34.82 E-value=2.2e+02 Score=29.24 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=46.3
Q ss_pred HHHHHHHHHHCCCccEEEeccCCC-----chhhHh--h----------------------hCCCCChHHHHHHHHHHHHH
Q 036948 141 YNNLINELTANGIQPFVTLFHWDT-----PQALED--E----------------------YGGFLSPRIVNDFRDYAQVC 191 (514)
Q Consensus 141 y~~~i~~l~~~gI~p~vtL~h~~~-----P~~l~~--~----------------------~ggw~~~~~~~~f~~ya~~~ 191 (514)
..+||+.|+++|++.++.+.-+-. |...+. + +-.|.||+.++.|.+..+.+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~ 145 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEW 145 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHH
Confidence 458999999999997776543321 222110 0 11378899999998888877
Q ss_pred HHHhCCCcceEEeccCcccc
Q 036948 192 FREFGDRVKHWITLNEPWTY 211 (514)
Q Consensus 192 ~~~~gd~v~~W~t~NEp~~~ 211 (514)
....|- --+|+=+|||..+
T Consensus 146 ~~~~gv-dg~w~D~~Ep~~~ 164 (317)
T cd06600 146 LNSQGV-DGIWLDMNEPSDF 164 (317)
T ss_pred hhcCCC-ceEEeeCCCCccH
Confidence 655443 2478999999643
No 112
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.71 E-value=2e+02 Score=29.36 Aligned_cols=107 Identities=13% Similarity=0.160 Sum_probs=68.6
Q ss_pred chHHHHHHHHHcCCC--eeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCC---chh-----
Q 036948 98 RYKEDVRIIKEMNLD--AYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDT---PQA----- 167 (514)
Q Consensus 98 ~~~eDi~lm~~lG~~--~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~---P~~----- 167 (514)
...+-++.+++.|+. ++=+.+.|..-. + +=.+|.+-..--..|++.|+++|+++++.+.=+-. +..
T Consensus 31 ~v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g--~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~ 106 (303)
T cd06592 31 TVLNYAQEIIDNGFPNGQIEIDDNWETCY--G--DFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVE 106 (303)
T ss_pred HHHHHHHHHHHcCCCCCeEEeCCCccccC--C--ccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhh
Confidence 356678888999965 666666775321 1 11334332233568999999999998886542211 111
Q ss_pred ----hHhhhC----------C------CCChHHHHHHHHHHHHHHHHhCCCcceEEeccCcc
Q 036948 168 ----LEDEYG----------G------FLSPRIVNDFRDYAQVCFREFGDRVKHWITLNEPW 209 (514)
Q Consensus 168 ----l~~~~g----------g------w~~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~ 209 (514)
+.++-| | +.||++++.|.+..+.++...|= =-+|+=+|||.
T Consensus 107 ~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~ 167 (303)
T cd06592 107 KGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGI-DSFKFDAGEAS 167 (303)
T ss_pred CCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCC-cEEEeCCCCcc
Confidence 101001 1 67899999999999888877754 24688899997
No 113
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=34.44 E-value=1.4e+02 Score=30.00 Aligned_cols=65 Identities=11% Similarity=0.087 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChH
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPR 179 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~ 179 (514)
.+|++...+.|++.+|+++..+ .++-..++++.++++|+++.+++.+... .
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~---------------~~~~~~~~i~~ak~~G~~v~~~~~~a~~--------------~ 135 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH---------------EFDEALPLIKAIKEKGYEVFFNLMAISG--------------Y 135 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc---------------cHHHHHHHHHHHHHCCCeEEEEEEeecC--------------C
Confidence 5899999999999999987332 2355789999999999999998866321 1
Q ss_pred HHHHHHHHHHHHHH
Q 036948 180 IVNDFRDYAQVCFR 193 (514)
Q Consensus 180 ~~~~f~~ya~~~~~ 193 (514)
..+.+.++++.+.+
T Consensus 136 ~~~~~~~~~~~~~~ 149 (266)
T cd07944 136 SDEELLELLELVNE 149 (266)
T ss_pred CHHHHHHHHHHHHh
Confidence 25557777777654
No 114
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=34.03 E-value=1.1e+02 Score=29.82 Aligned_cols=69 Identities=9% Similarity=0.079 Sum_probs=43.1
Q ss_pred chhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe-ccCCCc
Q 036948 94 DSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL-FHWDTP 165 (514)
Q Consensus 94 d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL-~h~~~P 165 (514)
++-+++++=+++++++|.+..++...+. |............++..+.+.+.+.+.||+..+=. .+++.|
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~---~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLAGKR---PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECcCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 3456677889999999999998654321 21100011223445678888888999999866632 444444
No 115
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=33.94 E-value=2.4e+02 Score=28.05 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEec
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLF 160 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~ 160 (514)
.+|++.+.+.|++.+|+..+-+.+. -...+++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~~---------------~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEAD---------------VSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhHH---------------HHHHHHHHHHHCCCeEEEEEE
Confidence 5999999999999999887665331 245788889999999888873
No 116
>PLN02960 alpha-amylase
Probab=33.85 E-value=73 Score=37.52 Aligned_cols=96 Identities=9% Similarity=0.132 Sum_probs=59.7
Q ss_pred CchhhchHHH-HHHHHHcCCCeeeeccc--------cc-------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccE
Q 036948 93 VDSYHRYKED-VRIIKEMNLDAYRFSIS--------WS-------RILPNGKLSGGVNKEGIRFYNNLINELTANGIQPF 156 (514)
Q Consensus 93 ~d~y~~~~eD-i~lm~~lG~~~~R~si~--------Ws-------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~ 156 (514)
+..|.-..+. |.-+|+||++++-+.=- |. .+.|.- |. .+=++.+|++|+++||++|
T Consensus 412 ~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y---Gt-----p~dfk~LVd~aH~~GI~VI 483 (897)
T PLN02960 412 ISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF---GT-----PDDFKRLVDEAHGLGLLVF 483 (897)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc---CC-----HHHHHHHHHHHHHCCCEEE
Confidence 3456666655 99999999999876531 11 111111 22 2338899999999999999
Q ss_pred EEe--ccCCC--c--h---------hhHh--h--hCCC-------CChHHHHHHHHHHHHHHHHhC
Q 036948 157 VTL--FHWDT--P--Q---------ALED--E--YGGF-------LSPRIVNDFRDYAQVCFREFG 196 (514)
Q Consensus 157 vtL--~h~~~--P--~---------~l~~--~--~ggw-------~~~~~~~~f~~ya~~~~~~~g 196 (514)
+.+ .|+.. + . ++.. . +..| .++++.+.+.+=|+.-+++|+
T Consensus 484 LDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 484 LDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred EEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 986 34322 1 0 1110 0 0112 246788888888888888884
No 117
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=33.53 E-value=1.9e+02 Score=30.01 Aligned_cols=68 Identities=24% Similarity=0.268 Sum_probs=46.9
Q ss_pred HHHHHHHHHCCCccEEEeccCCCch--------hhH--hh-----------h-----------CCCCChHHHHHHHHHHH
Q 036948 142 NNLINELTANGIQPFVTLFHWDTPQ--------ALE--DE-----------Y-----------GGFLSPRIVNDFRDYAQ 189 (514)
Q Consensus 142 ~~~i~~l~~~gI~p~vtL~h~~~P~--------~l~--~~-----------~-----------ggw~~~~~~~~f~~ya~ 189 (514)
.+||+.|+++|++.++.+.-+-.+. +-+ ++ | -.+.||+.++.|.+..+
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~ 148 (339)
T cd06602 69 PEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIK 148 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHH
Confidence 7899999999999888775443332 111 00 0 12778999999988877
Q ss_pred HHHHHhCCCcceEEeccCccc
Q 036948 190 VCFREFGDRVKHWITLNEPWT 210 (514)
Q Consensus 190 ~~~~~~gd~v~~W~t~NEp~~ 210 (514)
.++..+|- --+|+=.|||..
T Consensus 149 ~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 149 DFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHhcCCC-cEEEecCCCCch
Confidence 76665543 356888999964
No 118
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=33.51 E-value=1.2e+02 Score=32.19 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
++|++.+.+.|++.++++++-|.+.-.... +.--.+.++-..+.++.+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~-~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKL-KKTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHh-CCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 789999999999999999976665333211 22235677888999999999999988764
No 119
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=33.48 E-value=1.4e+02 Score=32.28 Aligned_cols=105 Identities=13% Similarity=0.111 Sum_probs=63.2
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCCC-ChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCC
Q 036948 100 KEDVRIIKEMNLDAYRFSI-SWS-RILPNGKLSGGV-NKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFL 176 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~~-n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~ 176 (514)
+|.+++|+++|+|-+.+++ +-+ .+...- |+. +. +-..+.|+.+++.|...+..-.=+++|.
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~l---gR~~~~---~~~~~~i~~l~~~g~~~v~~DlI~GlPg---------- 226 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRRA---GRKDDR---EEVLARLEELVARDRAAVVCDLIFGLPG---------- 226 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHHh---CCCCCH---HHHHHHHHHHHhCCCCcEEEEEEeeCCC----------
Confidence 6889999999999888888 443 222221 222 22 3466789999999954444333456663
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEeccCcccccccccCCCCCC
Q 036948 177 SPRIVNDFRDYAQVCFREFGDRVKHWITLNEPWTYSVGGYGDGSLA 222 (514)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~~~~~~y~~G~~~ 222 (514)
++.+.|.+=.+.+.+-=-++|..+...-||+......+..|.++
T Consensus 227 --qT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 227 --QTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 12344444455555443467888888888876433333344443
No 120
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=33.02 E-value=74 Score=37.26 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=43.6
Q ss_pred hhchHHHHHHHHHcCCCeeeecccc---------------cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe-
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSISW---------------SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL- 159 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si~W---------------sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL- 159 (514)
+....+-+.-+++||++++=+|=-+ .+|.|.- | +.+=+++++++|+++||.+|+.+
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----t~edf~~Lv~aah~~Gm~vIlDiV 86 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL---G-----GEEGLRRLSEAARARGLGLIVDIV 86 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 4457888999999999998666533 2333332 2 23458899999999999999975
Q ss_pred -ccCC
Q 036948 160 -FHWD 163 (514)
Q Consensus 160 -~h~~ 163 (514)
.|..
T Consensus 87 pNH~a 91 (825)
T TIGR02401 87 PNHMA 91 (825)
T ss_pred ccccc
Confidence 4544
No 121
>PLN02389 biotin synthase
Probab=33.00 E-value=1.1e+02 Score=32.55 Aligned_cols=57 Identities=23% Similarity=0.167 Sum_probs=41.9
Q ss_pred chHHHHHHHHHcCCCeeeecccccc-cccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe
Q 036948 98 RYKEDVRIIKEMNLDAYRFSISWSR-ILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 98 ~~~eDi~lm~~lG~~~~R~si~Wsr-i~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
.-+|.++.||++|++.|-.+++=++ ++|.-. ..-++ +..-+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~--~~~s~---e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVI--TTRSY---DDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcC--CCCCH---HHHHHHHHHHHHcCCeEeEEE
Confidence 4689999999999999999884233 555531 12233 557899999999999876653
No 122
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=32.64 E-value=2.6e+02 Score=28.74 Aligned_cols=71 Identities=11% Similarity=0.163 Sum_probs=44.6
Q ss_pred HHHHHHHHHHCCCccEEEeccCCC---chhhH--hh---------------------hCCCCChHHHHHHHHHHHHHHHH
Q 036948 141 YNNLINELTANGIQPFVTLFHWDT---PQALE--DE---------------------YGGFLSPRIVNDFRDYAQVCFRE 194 (514)
Q Consensus 141 y~~~i~~l~~~gI~p~vtL~h~~~---P~~l~--~~---------------------~ggw~~~~~~~~f~~ya~~~~~~ 194 (514)
-..||+.|+++|++.++.+.-+-. +.+=+ ++ +-.|.||+.++.|.+..+..+..
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~ 147 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYD 147 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhc
Confidence 468999999999998886632211 11100 00 01267888888887766554444
Q ss_pred hCCCcceEEeccCccccc
Q 036948 195 FGDRVKHWITLNEPWTYS 212 (514)
Q Consensus 195 ~gd~v~~W~t~NEp~~~~ 212 (514)
.|- --+|+=+|||..+.
T Consensus 148 ~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 148 KGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred CCC-cEEEecCCCCCccC
Confidence 433 35689999998653
No 123
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.31 E-value=1.4e+02 Score=29.53 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=45.0
Q ss_pred ecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHh
Q 036948 116 FSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFREF 195 (514)
Q Consensus 116 ~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~ 195 (514)
+.++|..+.++|.. .... .......+++.++++|+++++++..+....... -..++..++.|++=+-..+++|
T Consensus 26 v~~~f~~i~~~G~l--~~~~-~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~ 98 (253)
T cd06545 26 INLAFANPDANGTL--NANP-VRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSY 98 (253)
T ss_pred EEEEEEEECCCCeE--EecC-cHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHh
Confidence 44456666666521 1110 113467889999999999999987665443221 1235677777766666666665
Q ss_pred C
Q 036948 196 G 196 (514)
Q Consensus 196 g 196 (514)
+
T Consensus 99 ~ 99 (253)
T cd06545 99 N 99 (253)
T ss_pred C
Confidence 3
No 124
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=32.29 E-value=1.6e+02 Score=30.71 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe--ccCCCchhhH
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL--FHWDTPQALE 169 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL--~h~~~P~~l~ 169 (514)
.+|++.+.+.|++.+|+....+.. +--.+.|+.+++.|+++.+.+ .|...|..+.
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~---------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~ 146 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA---------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKLA 146 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH---------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHH
Confidence 689999999999999988754322 124688999999999988776 4554555443
No 125
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=31.96 E-value=1.2e+02 Score=36.51 Aligned_cols=75 Identities=15% Similarity=0.193 Sum_probs=47.3
Q ss_pred CeEEEeecCccCCCCCccCcccccChhhhHHHHHHHHHHHHHHHHcCCCEEEEeecccccccccc---C-----CCCCce
Q 036948 415 PLIYVTENGIDEVNDPKLTLEEALVDNMRIDYYYRHLYFLQKAIRYGVKVKGYFAWSLLDNFEWS---A-----GYTVRF 486 (514)
Q Consensus 415 ppI~ITENG~~~~~~~~~~~~~~i~D~~Ri~yl~~hl~~l~~Ai~dGv~V~GY~~WSl~Dn~EW~---~-----Gy~~rf 486 (514)
.|++++|.|.+..+.+ |. ++++. .+++.-=.+.|=|+|..+|-=-.. + +|.--|
T Consensus 506 kP~i~~Ey~hamgn~~-----g~---------~~~yw----~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~ 567 (1021)
T PRK10340 506 KPRILCEYAHAMGNGP-----GG---------LTEYQ----NVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDY 567 (1021)
T ss_pred CcEEEEchHhccCCCC-----CC---------HHHHH----HHHHhCCceeEEeeeecCcccccccCCCCCEEEEECCCC
Confidence 4599999998765321 11 23333 456667789999999999941110 1 122222
Q ss_pred ------------eEEEEcCCCCccccccchHHHHHHHhc
Q 036948 487 ------------GINYVDYKDGLKRYPKLSARWFKKFLK 513 (514)
Q Consensus 487 ------------GL~~VD~~~~~~R~pK~S~~~y~~ii~ 513 (514)
||+. ..|+||++++.||++.+
T Consensus 568 g~~p~~~~f~~~Glv~------~dr~p~p~~~e~k~~~~ 600 (1021)
T PRK10340 568 GDYPNNYNFCIDGLIY------PDQTPGPGLKEYKQVIA 600 (1021)
T ss_pred CCCCCCcCcccceeEC------CCCCCChhHHHHHHhcc
Confidence 4433 34779999999998754
No 126
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=31.73 E-value=1.6e+02 Score=32.12 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=40.0
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCc
Q 036948 99 YKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTP 165 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P 165 (514)
.++|++.+.+.|++.+|+.++-+.+. -....++.++++|+.+.+++..-+-|
T Consensus 98 v~~~v~~A~~~Gvd~irif~~lnd~~---------------n~~~~v~~ak~~G~~v~~~i~~t~~p 149 (448)
T PRK12331 98 VESFVQKSVENGIDIIRIFDALNDVR---------------NLETAVKATKKAGGHAQVAISYTTSP 149 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHH---------------HHHHHHHHHHHcCCeEEEEEEeecCC
Confidence 46778999999999999998554331 14568899999999888887765556
No 127
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=31.13 E-value=53 Score=40.33 Aligned_cols=66 Identities=12% Similarity=0.227 Sum_probs=40.3
Q ss_pred chhhchH--HHHHHHHHcCCCeeeecccccccc-----cCC------CC-C--CCCC--hH--HHHHHHHHHHHHHHCCC
Q 036948 94 DSYHRYK--EDVRIIKEMNLDAYRFSISWSRIL-----PNG------KL-S--GGVN--KE--GIRFYNNLINELTANGI 153 (514)
Q Consensus 94 d~y~~~~--eDi~lm~~lG~~~~R~si~Wsri~-----P~~------~~-~--g~~n--~~--gl~~y~~~i~~l~~~gI 153 (514)
.-|.... +.|.-+|+|||+++=+.=-..... +.+ .- . -.+| .. .++=++.||++|+++||
T Consensus 182 Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI 261 (1221)
T PRK14510 182 GTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGI 261 (1221)
T ss_pred cHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCC
Confidence 3455555 668899999999987654222110 000 00 0 0011 11 34558999999999999
Q ss_pred ccEEEe
Q 036948 154 QPFVTL 159 (514)
Q Consensus 154 ~p~vtL 159 (514)
++|+.+
T Consensus 262 ~VILDv 267 (1221)
T PRK14510 262 AVILDV 267 (1221)
T ss_pred EEEEEE
Confidence 999974
No 128
>PRK12677 xylose isomerase; Provisional
Probab=31.11 E-value=3.2e+02 Score=29.04 Aligned_cols=71 Identities=21% Similarity=0.239 Sum_probs=45.7
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccE-EEeccCCCchhhHhhhCCCCC
Q 036948 99 YKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPF-VTLFHWDTPQALEDEYGGFLS 177 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~-vtL~h~~~P~~l~~~~ggw~~ 177 (514)
.+|-++.++++|+..+=+.. ..+.|-+ -..... -...+++-+.+.+.||++. +|...|..|.+ +.|++.+
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~---~~~~~~-~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts 103 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG---ATDAER-DRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTS 103 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC---CChhhh-HHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCC
Confidence 68889999999999886632 2244443 111111 1246788888899999955 55555656644 2378887
Q ss_pred h
Q 036948 178 P 178 (514)
Q Consensus 178 ~ 178 (514)
+
T Consensus 104 ~ 104 (384)
T PRK12677 104 N 104 (384)
T ss_pred C
Confidence 5
No 129
>PRK03705 glycogen debranching enzyme; Provisional
Probab=30.60 E-value=94 Score=35.58 Aligned_cols=54 Identities=13% Similarity=0.327 Sum_probs=36.1
Q ss_pred HHHHHHcCCCeeeeccc-----------------c-------cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEE
Q 036948 103 VRIIKEMNLDAYRFSIS-----------------W-------SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVT 158 (514)
Q Consensus 103 i~lm~~lG~~~~R~si~-----------------W-------sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 158 (514)
|.-+|+|||+++-+.=- | -.+.|.= |.-....++=++.||++|+++||++|+.
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y---gt~~~~~~~efk~LV~~~H~~GI~VIlD 261 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY---ASGPETALDEFRDAVKALHKAGIEVILD 261 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc---CCCCcchHHHHHHHHHHHHHCCCEEEEE
Confidence 88999999999866421 1 1222221 1111123456999999999999999997
Q ss_pred e
Q 036948 159 L 159 (514)
Q Consensus 159 L 159 (514)
+
T Consensus 262 v 262 (658)
T PRK03705 262 V 262 (658)
T ss_pred E
Confidence 5
No 130
>PRK07094 biotin synthase; Provisional
Probab=30.39 E-value=79 Score=32.35 Aligned_cols=56 Identities=16% Similarity=0.114 Sum_probs=39.2
Q ss_pred chHHHHHHHHHcCCCeeeeccc-c-cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEE
Q 036948 98 RYKEDVRIIKEMNLDAYRFSIS-W-SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVT 158 (514)
Q Consensus 98 ~~~eDi~lm~~lG~~~~R~si~-W-sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 158 (514)
.-+|+++.|+++|++.+-++++ - .++...-. ...+. +-+.+.++.+++.||.+..+
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~--~~~s~---~~~~~~i~~l~~~Gi~v~~~ 184 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLH--PGMSF---ENRIACLKDLKELGYEVGSG 184 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhC--CCCCH---HHHHHHHHHHHHcCCeecce
Confidence 3478999999999999999883 3 34443321 11232 55888999999999975433
No 131
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.38 E-value=1.7e+02 Score=29.41 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=52.0
Q ss_pred CCchhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhH
Q 036948 92 AVDSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALE 169 (514)
Q Consensus 92 a~d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~ 169 (514)
+.+..+...+-.+.+|++|+..+|-+..=+|=-|.+. .| + +.+.+..+-+.+++.||..+.+.++-..+..+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~-~G-~---g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSF-QG-L---GEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCcc-CC-c---HHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 4456777888889999999999999985577666542 12 2 235566777778999999777776654444443
No 132
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=30.31 E-value=99 Score=32.25 Aligned_cols=68 Identities=10% Similarity=0.138 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChH
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPR 179 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~ 179 (514)
.+|++...+.|++.+|+....++. +--.+.|+.+++.|+++.+++.... ..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~---------------~~~~~~i~~ak~~G~~v~~~l~~a~--------------~~ 141 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA---------------DVSEQHIGLARELGMDTVGFLMMSH--------------MA 141 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH---------------HHHHHHHHHHHHCCCeEEEEEEecc--------------CC
Confidence 589999999999999998755432 1246899999999999999886431 11
Q ss_pred HHHHHHHHHHHHHHHhCC
Q 036948 180 IVNDFRDYAQVCFREFGD 197 (514)
Q Consensus 180 ~~~~f~~ya~~~~~~~gd 197 (514)
..+.+.+.++.+. .+|-
T Consensus 142 ~~e~l~~~a~~~~-~~Ga 158 (337)
T PRK08195 142 PPEKLAEQAKLME-SYGA 158 (337)
T ss_pred CHHHHHHHHHHHH-hCCC
Confidence 3456777777754 4554
No 133
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=30.21 E-value=1.7e+02 Score=29.49 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEec-cCCCchhhHhhhCCCCCh
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLF-HWDTPQALEDEYGGFLSP 178 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~-h~~~P~~l~~~~ggw~~~ 178 (514)
.+|++.+.+.|++.+++.++=|...-.... +.=-.+.++...+.++.++++|+++.+++. .|+.|. .|-.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~-~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~-- 146 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASETFSQKNI-NCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV-- 146 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC--
Confidence 689999999999999999855543222110 222356778899999999999999988876 466662 3332
Q ss_pred HHHHHHHHHHHHHHH
Q 036948 179 RIVNDFRDYAQVCFR 193 (514)
Q Consensus 179 ~~~~~f~~ya~~~~~ 193 (514)
..+.+.++++.+.+
T Consensus 147 -~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 -PPERVAEVAERLLD 160 (274)
T ss_pred -CHHHHHHHHHHHHH
Confidence 35667777777654
No 134
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=30.00 E-value=1.1e+02 Score=38.84 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=48.0
Q ss_pred hhchHHHHHHHHHcCCCeeeeccccc---------------ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe-
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSISWS---------------RILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL- 159 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si~Ws---------------ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL- 159 (514)
...+.+-+.-+++|||+++=+|=-+. +|.|.- | +.+=+++++++|+++||++|+.+
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l---G-----~~edf~~Lv~~ah~~Gi~vilDiV 828 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI---G-----GEEGFERFCAALKAHGLGQLLDIV 828 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc---C-----CHHHHHHHHHHHHHCCCEEEEEec
Confidence 55678889999999999986654433 344442 2 23448999999999999999975
Q ss_pred -ccCC-----CchhhH
Q 036948 160 -FHWD-----TPQALE 169 (514)
Q Consensus 160 -~h~~-----~P~~l~ 169 (514)
.|.. .|.|..
T Consensus 829 ~NH~~~~~~~n~w~~d 844 (1693)
T PRK14507 829 PNHMGVGGADNPWWLD 844 (1693)
T ss_pred ccccCCCccCCHHHHH
Confidence 4654 666654
No 135
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=29.95 E-value=62 Score=37.24 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=35.0
Q ss_pred HHHHHHcCCCeeeecccccccc----------------cCCCCCCCCCh-----HHHHHHHHHHHHHHHCCCccEEEe
Q 036948 103 VRIIKEMNLDAYRFSISWSRIL----------------PNGKLSGGVNK-----EGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 103 i~lm~~lG~~~~R~si~Wsri~----------------P~~~~~g~~n~-----~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
|.-+|+|||+++-+.=--.-.. |... -.++. ..++=+++||++|+++||++|+.+
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y--~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGF--FAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccc--cccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 7899999999987654211110 0000 00111 023458999999999999999975
No 136
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=29.83 E-value=1.5e+02 Score=29.16 Aligned_cols=54 Identities=13% Similarity=0.187 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhC
Q 036948 139 RFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFREFG 196 (514)
Q Consensus 139 ~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~g 196 (514)
+.....|..|+++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 51 ~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 51 TNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred HHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 556789999999999999998765544222 012445556666666666666664
No 137
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=29.46 E-value=6.6e+02 Score=26.05 Aligned_cols=193 Identities=15% Similarity=0.134 Sum_probs=104.6
Q ss_pred hchHHHHHHHHHcCCCeeeecccccccccC-CCC-------------CCCCChHHHHHHHHHHHHHHHCCCccEEEeccC
Q 036948 97 HRYKEDVRIIKEMNLDAYRFSISWSRILPN-GKL-------------SGGVNKEGIRFYNNLINELTANGIQPFVTLFHW 162 (514)
Q Consensus 97 ~~~~eDi~lm~~lG~~~~R~si~Wsri~P~-~~~-------------~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~ 162 (514)
++-..-....+.+|++++=+--.|....+. |.. +...|+.--...+.+-+.+++.|=+|+|
T Consensus 76 Nh~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyv----- 150 (323)
T COG2515 76 NHVRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYV----- 150 (323)
T ss_pred hHHHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcE-----
Confidence 344666788999999999888888811111 000 0112332224567888899999999988
Q ss_pred CCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCcce-EEeccCcccccccccCCCCCCCCCCCcccccccCCCCCCc
Q 036948 163 DTPQALEDEYGGFLSPRIVNDFRDYAQVCFREFGDRVKH-WITLNEPWTYSVGGYGDGSLAPGRCSDWQQLNCTGGDSGV 241 (514)
Q Consensus 163 ~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~-W~t~NEp~~~~~~~y~~G~~~Pg~~~~~~~~~~~~~~~~~ 241 (514)
.|. || .|+.-.--|.+.|..+...-...+++ |++.-==.--+..|+..|.-.++......+..|.. +..
T Consensus 151 -Ip~------GG-~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~--~~~ 220 (323)
T COG2515 151 -IPE------GG-SSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSA--DPE 220 (323)
T ss_pred -ecc------CC-cCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecC--CHH
Confidence 332 77 77766667788888877665432322 44432222222344555544444333323333322 211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCCCCceEEEEeeCceeecCC--CCHHHHHHHHHHHHHhhccccccccccc
Q 036948 242 EPYLVAHHHLLAHAAAVHLYKNTYQTTQKGKIGITLVSSWMVPYS--SAKHHQNAAERALDFMLGWFMDPLTNGN 314 (514)
Q Consensus 242 ~~~~~~h~~l~AHa~A~~~~r~~~~~~~~~~IGi~~~~~~~~P~~--~~~~D~~AA~~~~~~~~~~fldpi~~G~ 314 (514)
..-+-..++..+.++.+.+- ...-+......+.|.- ++++++++-+..- -.-+..+||++.|.
T Consensus 221 ~~~~qv~~L~~~~a~~~~~~---------~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~-~~eGillDpVYtgK 285 (323)
T COG2515 221 KLKEQVLNLAQATAELLGLG---------SEADVLLSDDYHHPGYGKPNEEDIEAIKLLA-RLEGILLDPVYTGK 285 (323)
T ss_pred HHHHHHHHHHHHHHHHcCCC---------CCceEEEEecccCCccCCcCHHHHHHHHHHH-HhhCcccccccchH
Confidence 11223344444444443322 2333444555566643 3677877755432 33477899999886
No 138
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=29.27 E-value=2.7e+02 Score=29.92 Aligned_cols=89 Identities=13% Similarity=0.282 Sum_probs=58.7
Q ss_pred hHHHHHHHHHcCCCeeeecc--cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccE-EEeccCCCchh--hHhhhC
Q 036948 99 YKEDVRIIKEMNLDAYRFSI--SWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPF-VTLFHWDTPQA--LEDEYG 173 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si--~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~-vtL~h~~~P~~--l~~~~g 173 (514)
..+|+..++++.--..|+++ .|. .+|.+.++ +.++++||+.- +....|..|+- -.=++|
T Consensus 72 ~i~D~~~v~~Lt~~~~~v~LH~~wd----------~vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~G 135 (412)
T TIGR02629 72 KLEDCAVIQQLTRATPNVSLHIPWD----------KADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFG 135 (412)
T ss_pred HHHHHHHHHhhcCCCCCccccCCCC----------cCCHHHHH------HHHHHcCCccceeccccccCccccccccccc
Confidence 47889999988877777777 882 13655544 88999999988 76666777732 111347
Q ss_pred CCCCh--HHHHHHHHHHHHH---HHHhCCC-cceEE
Q 036948 174 GFLSP--RIVNDFRDYAQVC---FREFGDR-VKHWI 203 (514)
Q Consensus 174 gw~~~--~~~~~f~~ya~~~---~~~~gd~-v~~W~ 203 (514)
...|| .+.+...+.+..| .++.|.+ |..|+
T Consensus 136 SLtnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 136 SLSHTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 77775 5556556665555 5566664 44443
No 139
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=29.13 E-value=2.5e+02 Score=29.16 Aligned_cols=98 Identities=18% Similarity=0.270 Sum_probs=62.6
Q ss_pred hhchHHHHHHHHHcCCCeeeecc--cccccccCCCC-----CCCCChHHHHHHHHHHHHHHHCCCccEEEeccCC-----
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSI--SWSRILPNGKL-----SGGVNKEGIRFYNNLINELTANGIQPFVTLFHWD----- 163 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si--~Wsri~P~~~~-----~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~----- 163 (514)
-.++++=++++++.|+|++=+.+ .+-.|-=.... .|. ....+.=...+++.|+++||.||.-+.-|-
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga-~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la 90 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGA-VKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLA 90 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhccc-ccccccCHHHHHHHHHHCCCEEEEEEEEecChHHh
Confidence 34678889999999999999998 66665321100 011 111123367899999999999998665432
Q ss_pred --CchhhHhhhC----------CCCCh---HHHHHHHHHHHHHHHH
Q 036948 164 --TPQALEDEYG----------GFLSP---RIVNDFRDYAQVCFRE 194 (514)
Q Consensus 164 --~P~~l~~~~g----------gw~~~---~~~~~f~~ya~~~~~~ 194 (514)
.|.|-...-+ .|.|| ++.++-.+-|+.+++.
T Consensus 91 ~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 91 EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 3433321111 27776 7777777777777754
No 140
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=28.32 E-value=1.9e+02 Score=27.56 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcceEE
Q 036948 178 PRIVNDFRDYAQVCFREFGDRVKHWI 203 (514)
Q Consensus 178 ~~~~~~f~~ya~~~~~~~gd~v~~W~ 203 (514)
.+..+...+|++.|-+++|.++-+++
T Consensus 109 ~~~~~~~~~fl~~ve~~~g~~piIYt 134 (190)
T cd06419 109 KKSTQKLGLLVQLLEQHYNQSVIIRG 134 (190)
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEEEe
Confidence 45667778888888777777655443
No 141
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=28.04 E-value=2.1e+02 Score=30.09 Aligned_cols=64 Identities=20% Similarity=0.408 Sum_probs=48.0
Q ss_pred CchhhchHHHHHHHHHcCCC-------eee-------ecccccccccCCCCCCCCC-hHHHHHHHHHHHHHHHCCCccE
Q 036948 93 VDSYHRYKEDVRIIKEMNLD-------AYR-------FSISWSRILPNGKLSGGVN-KEGIRFYNNLINELTANGIQPF 156 (514)
Q Consensus 93 ~d~y~~~~eDi~lm~~lG~~-------~~R-------~si~Wsri~P~~~~~g~~n-~~gl~~y~~~i~~l~~~gI~p~ 156 (514)
+...+.-.|-.+.+|++|-. ..| .+..|.-+.-++.++|.+| .+||...++++-++.+.|+...
T Consensus 64 I~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~~~e~Glp~a 142 (353)
T PRK12755 64 IHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLDLVELGLPLA 142 (353)
T ss_pred CCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHHHHHhCCCEE
Confidence 34455556666777777654 444 7788999877766678888 8999999999988889998633
No 142
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=27.82 E-value=2.6e+02 Score=29.73 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCCeeeecc-cc-cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccE-EEeccCCCchhhHhhhCCCC
Q 036948 100 KEDVRIIKEMNLDAYRFSI-SW-SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPF-VTLFHWDTPQALEDEYGGFL 176 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si-~W-sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~-vtL~h~~~P~~l~~~~ggw~ 176 (514)
++.+++|+++|+|.+.+++ +- .++...-. ...+. +-..+.++.+++.|++.+ +.| =+++|.
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~--R~~~~---~~~~~ai~~l~~~G~~~v~~dl-I~GlPg---------- 178 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCG--RSHRV---KDIFAAVDLIHQAGIENFSLDL-ISGLPH---------- 178 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHhC--CCCCH---HHHHHHHHHHHHcCCCeEEEEe-ecCCCC----------
Confidence 5889999999999777777 33 22222210 11222 335678999999999843 444 456663
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEeccCcccccccccCCCCC
Q 036948 177 SPRIVNDFRDYAQVCFREFGDRVKHWITLNEPWTYSVGGYGDGSL 221 (514)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~~~~~~y~~G~~ 221 (514)
++.+.+.+=++.+.+-=-++|......-||+.....-+..|.+
T Consensus 179 --qt~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 179 --QTLEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred --CCHHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 2233444444444443346777777777887554433444443
No 143
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=26.82 E-value=71 Score=34.39 Aligned_cols=57 Identities=21% Similarity=0.220 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCCeeeecc------cccccccCCCCCCCC--ChHHHHHHHHHHHHHHHCCCccEEEe
Q 036948 101 EDVRIIKEMNLDAYRFSI------SWSRILPNGKLSGGV--NKEGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 101 eDi~lm~~lG~~~~R~si------~Wsri~P~~~~~g~~--n~~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
+-+..+++||+++.=++= ++.+--.... ..+ .+-.++-.++++++++++||+.|+.+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy--~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDY--TKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccch--hhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 668899999999884332 1111111110 111 12345668999999999999999986
No 144
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=26.18 E-value=85 Score=32.09 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=36.9
Q ss_pred hHHHHHHHHHcCCCeee-ecc-cc-----cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEe
Q 036948 99 YKEDVRIIKEMNLDAYR-FSI-SW-----SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTL 159 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R-~si-~W-----sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL 159 (514)
.+|.++.||++|++.+- .+. .- .++.|+. ... +-+.+.++.+++.||++..++
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~-----~t~---~~~l~~i~~a~~~Gi~~~s~~ 165 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNK-----LSS---DEWLEVIKTAHRLGIPTTATM 165 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCC-----CCH---HHHHHHHHHHHHcCCCceeeE
Confidence 47889999999999885 243 12 1233443 233 446799999999999988664
No 145
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=25.97 E-value=4.7e+02 Score=24.32 Aligned_cols=50 Identities=18% Similarity=0.377 Sum_probs=32.2
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCc
Q 036948 102 DVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTP 165 (514)
Q Consensus 102 Di~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P 165 (514)
|.+.+|+.|++.+=+-+. +| .+..|. .|..-++.++++|| .+..|||..|
T Consensus 13 d~~~~k~~gi~fviiKat------eG--~~y~D~----~~~~~~~~a~~aGl--~~G~Yhy~~~ 62 (184)
T cd06525 13 NFNAVKDSGVEVVYIKAT------EG--TTFVDS----YFNENYNGAKAAGL--KVGFYHFLVG 62 (184)
T ss_pred CHHHHHhCCCeEEEEEec------CC--CcccCH----hHHHHHHHHHHCCC--ceEEEEEeeC
Confidence 567777777664433332 34 244564 47778888888888 3688887765
No 146
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=25.83 E-value=1.7e+02 Score=30.02 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHCCCc-cEE----------------EeccCCCchhhHhhhCCCCCh-H-HHHHHHHHHHHHHHHhCCC-
Q 036948 139 RFYNNLINELTANGIQ-PFV----------------TLFHWDTPQALEDEYGGFLSP-R-IVNDFRDYAQVCFREFGDR- 198 (514)
Q Consensus 139 ~~y~~~i~~l~~~gI~-p~v----------------tL~h~~~P~~l~~~~ggw~~~-~-~~~~f~~ya~~~~~~~gd~- 198 (514)
+-|.++++.+++.||+ |++ .+++-.+|.|+.+++...... + ..+.=.+||....+.+-+.
T Consensus 189 ~~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~g 268 (296)
T PRK09432 189 ESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSREG 268 (296)
T ss_pred HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5577999999999966 333 346899999999887666443 2 2222344555555554231
Q ss_pred c--ceEEeccCcccc
Q 036948 199 V--KHWITLNEPWTY 211 (514)
Q Consensus 199 v--~~W~t~NEp~~~ 211 (514)
| -+..|+|-+...
T Consensus 269 v~GvH~yt~n~~~~~ 283 (296)
T PRK09432 269 VKDFHFYTLNRAELT 283 (296)
T ss_pred CCEEEEecCCChHHH
Confidence 2 234467776643
No 147
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.59 E-value=5.8e+02 Score=25.89 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=32.2
Q ss_pred ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccC
Q 036948 122 RILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHW 162 (514)
Q Consensus 122 ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~ 162 (514)
+..|.. .+-++.+-++.++++.+.++++|-+.++=|.|.
T Consensus 62 ~~~~~~--~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~ 100 (327)
T cd02803 62 KGYPGQ--LGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA 100 (327)
T ss_pred cCCCCC--cCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC
Confidence 344443 267888999999999999999999999989884
No 148
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=25.53 E-value=1.2e+02 Score=31.53 Aligned_cols=72 Identities=13% Similarity=0.240 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChH
Q 036948 100 KEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPR 179 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~ 179 (514)
..-|++|.+.|++-.=.|+ +.|++ .+...+..+.++++.++++|+++||.. .|.-|.+ -||. .+
T Consensus 19 ~~Yi~~~~~~Gf~~IFtsl----~~~~~-----~~~~~~~~~~ell~~Anklg~~vivDv----nPsil~~--l~~S-~~ 82 (360)
T COG3589 19 IAYIDRMHKYGFKRIFTSL----LIPEE-----DAELYFHRFKELLKEANKLGLRVIVDV----NPSILKE--LNIS-LD 82 (360)
T ss_pred HHHHHHHHHcCccceeeec----ccCCc-----hHHHHHHHHHHHHHHHHhcCcEEEEEc----CHHHHhh--cCCC-hH
Confidence 3447889999987665554 34554 233567889999999999999999987 6777765 3442 23
Q ss_pred HHHHHHHH
Q 036948 180 IVNDFRDY 187 (514)
Q Consensus 180 ~~~~f~~y 187 (514)
.++.|.+.
T Consensus 83 ~l~~f~e~ 90 (360)
T COG3589 83 NLSRFQEL 90 (360)
T ss_pred HHHHHHHh
Confidence 44444443
No 149
>PTZ00445 p36-lilke protein; Provisional
Probab=25.28 E-value=89 Score=30.57 Aligned_cols=51 Identities=18% Similarity=0.379 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHCCCccEEEeccCCCchhhHhh-hCCCCChH---------HHHHHHHHHHHHHH
Q 036948 139 RFYNNLINELTANGIQPFVTLFHWDTPQALEDE-YGGFLSPR---------IVNDFRDYAQVCFR 193 (514)
Q Consensus 139 ~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~-~ggw~~~~---------~~~~f~~ya~~~~~ 193 (514)
+--+.+++.|++.||+.+++=+--+ |... -|||.++. ..+.|......+-+
T Consensus 29 ~~~~~~v~~L~~~GIk~Va~D~DnT----lI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 29 ESADKFVDLLNECGIKVIASDFDLT----MITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHHHHcCCeEEEecchhh----hhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH
Confidence 3456889999999999888632222 2221 28999997 55667766666544
No 150
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=25.09 E-value=1.5e+02 Score=28.95 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=33.6
Q ss_pred HHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCc
Q 036948 141 YNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFREFGDRV 199 (514)
Q Consensus 141 y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v 199 (514)
.+..++.+++.|+.-+=--.+|... ....-++-.+....+.+.+.++.| +.+|=+|
T Consensus 23 ~~~~~~~~~~~G~n~VRi~v~~~~~--~~~~~~~~~~~~~~~~ld~~v~~a-~~~gi~v 78 (281)
T PF00150_consen 23 TEADFDQLKALGFNTVRIPVGWEAY--QEPNPGYNYDETYLARLDRIVDAA-QAYGIYV 78 (281)
T ss_dssp HHHHHHHHHHTTESEEEEEEESTST--STTSTTTSBTHHHHHHHHHHHHHH-HHTT-EE
T ss_pred HHHHHHHHHHCCCCEEEeCCCHHHh--cCCCCCccccHHHHHHHHHHHHHH-HhCCCeE
Confidence 5689999999999966555555222 111112235566777777777776 4445554
No 151
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=25.08 E-value=2.3e+02 Score=31.95 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=60.7
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCc----hhhHhh---
Q 036948 99 YKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTP----QALEDE--- 171 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P----~~l~~~--- 171 (514)
.++|++++.+.|++.+|+..+.+.+ +-....++.++++|+.+.+++.+-..| ..+.+.
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~---------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~ 157 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDP---------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEE 157 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcH---------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHH
Confidence 4566899999999999999766432 225567788889999888887665555 222110
Q ss_pred -------------hCCCCChHHHHHHHHHHHHHHHHhCCCcceEEeccCccc
Q 036948 172 -------------YGGFLSPRIVNDFRDYAQVCFREFGDRVKHWITLNEPWT 210 (514)
Q Consensus 172 -------------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~ 210 (514)
..|...|.- ..+.++.+.++++ ..-..++.|-..+
T Consensus 158 ~~~~Gad~I~i~Dt~G~~~P~~---v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 158 LLEMGVDSICIKDMAGILTPKA---AYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred HHHcCCCEEEECCCCCCcCHHH---HHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 145555543 4455555556665 3345788887764
No 152
>PRK06256 biotin synthase; Validated
Probab=25.07 E-value=1.1e+02 Score=31.66 Aligned_cols=56 Identities=20% Similarity=0.228 Sum_probs=38.7
Q ss_pred chHHHHHHHHHcCCCeeeecc-cccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEE
Q 036948 98 RYKEDVRIIKEMNLDAYRFSI-SWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVT 158 (514)
Q Consensus 98 ~~~eDi~lm~~lG~~~~R~si-~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 158 (514)
.-+|.++.||++|++.+-+++ +=.++.+.- ....+. +-..+.|+.+++.||++..+
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i--~~~~t~---~~~i~~i~~a~~~Gi~v~~~ 206 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNV--VTTHTY---EDRIDTCEMVKAAGIEPCSG 206 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhc--CCCCCH---HHHHHHHHHHHHcCCeeccC
Confidence 447889999999999998887 423344432 111232 55778999999999985543
No 153
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=24.96 E-value=2.3e+02 Score=33.17 Aligned_cols=101 Identities=20% Similarity=0.326 Sum_probs=61.1
Q ss_pred cCCCeeeeccc-ccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEecc---CCCchh--hHhh-----------
Q 036948 109 MNLDAYRFSIS-WSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFH---WDTPQA--LEDE----------- 171 (514)
Q Consensus 109 lG~~~~R~si~-Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h---~~~P~~--l~~~----------- 171 (514)
+=+.++++.+. |.+ .-+ .=++|..-.---+.||+.|++.||+.++-+.. -+.|.. +.++
T Consensus 294 IP~d~~~lD~~~~~~--~~~--~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~ 369 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWG--DFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEI 369 (772)
T ss_pred CcceEEEEeehhhhc--ccc--ceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCE
Confidence 45678999995 876 111 11233222222449999999999998876642 233322 1111
Q ss_pred -----------hCCCCChHHHHHHHHHHHHHHHHhCCCcceEEeccCccccccc
Q 036948 172 -----------YGGFLSPRIVNDFRDYAQVCFREFGDRVKHWITLNEPWTYSVG 214 (514)
Q Consensus 172 -----------~ggw~~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~~~~~ 214 (514)
+-.+.||+.++.|.+....-+..+|- .-+|.=+|||.+....
T Consensus 370 ~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv-~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 370 YQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGV-DGFWNDMNEPEPFDGD 422 (772)
T ss_pred eeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCc-cEEEccCCCCcccccc
Confidence 11277999999999733333333332 4679999999987544
No 154
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.91 E-value=1e+02 Score=30.40 Aligned_cols=61 Identities=16% Similarity=0.080 Sum_probs=41.0
Q ss_pred chhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEE
Q 036948 94 DSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFV 157 (514)
Q Consensus 94 d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v 157 (514)
....+++.-+++++.+|+++.++........+.. ...-...++.++.+.+.+.++||+..+
T Consensus 87 ~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 87 ESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP---NVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH---HHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 4566778889999999999999864322111111 111134567788999999999997544
No 155
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=24.85 E-value=1.7e+02 Score=29.61 Aligned_cols=61 Identities=11% Similarity=0.349 Sum_probs=44.2
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhh
Q 036948 99 YKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEY 172 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ 172 (514)
.++=+++++++||..+.+..- +.-++..++||+++++.+.+++| +|..|--..|.=++..|
T Consensus 108 ~~~~f~~~~~~Gv~GvKidF~-----------~~d~Q~~v~~y~~i~~~AA~~~L--mvnfHg~~kPtG~~RTy 168 (273)
T PF10566_consen 108 LDEAFKLYAKWGVKGVKIDFM-----------DRDDQEMVNWYEDILEDAAEYKL--MVNFHGATKPTGLRRTY 168 (273)
T ss_dssp HHHHHHHHHHCTEEEEEEE-------------SSTSHHHHHHHHHHHHHHHHTT---EEEETTS---TTHHHCS
T ss_pred HHHHHHHHHHcCCCEEeeCcC-----------CCCCHHHHHHHHHHHHHHHHcCc--EEEecCCcCCCcccccC
Confidence 466799999999999998862 22378999999999999999998 67777666665555444
No 156
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=24.61 E-value=2.1e+02 Score=25.55 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=36.3
Q ss_pred HHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHHHhCCCc
Q 036948 141 YNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFREFGDRV 199 (514)
Q Consensus 141 y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~~~gd~v 199 (514)
+.-+|+.|++.|++|++-+.= ..+.|.. |-| .+++..+.|.+-.+.++++.|=.|
T Consensus 38 l~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG-~~~~~r~~~y~kI~~~~~~~gf~v 92 (130)
T PF04914_consen 38 LQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTG-LSKEMRQEYYKKIKYQLKSQGFNV 92 (130)
T ss_dssp HHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--E
T ss_pred HHHHHHHHHHcCCceEEEecC-CcHHHHH--HhC-CCHHHHHHHHHHHHHHHHHCCCEE
Confidence 678999999999999998721 1234443 455 366788888888888888887653
No 157
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=24.01 E-value=3.8e+02 Score=28.11 Aligned_cols=94 Identities=11% Similarity=0.138 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCC-CChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCC
Q 036948 100 KEDVRIIKEMNLDAYRFSI-SWS-RILPNGKLSGG-VNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFL 176 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~ 176 (514)
++.+++|+++|+|.+.+++ +=+ ++.-.- |+ .+. +-..+.++.+++.|+..+-.-.=+++|.
T Consensus 103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l---~R~~~~---~~~~~ai~~~~~~g~~~v~~Dli~GlPg---------- 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQTFDDPLLKLL---GRTHSS---SKAIDAVQECSEHGFSNLSIDLIYGLPT---------- 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEccccCCHHHHHHc---CCCCCH---HHHHHHHHHHHHcCCCeEEEEeecCCCC----------
Confidence 5889999999999766666 222 122111 21 222 3456788899999998543223455663
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEeccCcccc
Q 036948 177 SPRIVNDFRDYAQVCFREFGDRVKHWITLNEPWTY 211 (514)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~~ 211 (514)
++.+.|.+=++.+.+.=-++|..+...-||+..
T Consensus 167 --qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 --QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred --CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 245567666676665444678888888888753
No 158
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=24.00 E-value=3.4e+02 Score=28.43 Aligned_cols=96 Identities=15% Similarity=0.082 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCC
Q 036948 100 KEDVRIIKEMNLDAYRFSI-SWS-RILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLS 177 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~ 177 (514)
++.+++|+++|++.+.+++ +-+ ++.-.- ....+. +-..+.++.+++.||..+-.-.=+++|.
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l--~R~~s~---~~~~~a~~~l~~~g~~~v~~dli~GlPg----------- 171 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQSAAPHVLAVL--DRTHTP---GRAVAAAREARAAGFEHVNLDLIYGTPG----------- 171 (375)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCCH---HHHHHHHHHHHHcCCCcEEEEEeccCCC-----------
Confidence 5889999999999777777 333 222221 012232 4467889999999998343333445563
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcceEEeccCccccc
Q 036948 178 PRIVNDFRDYAQVCFREFGDRVKHWITLNEPWTYS 212 (514)
Q Consensus 178 ~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~~~ 212 (514)
++.+.|.+=.+.+.+.=-+.+......-||+...
T Consensus 172 -qt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l 205 (375)
T PRK05628 172 -ESDDDWRASLDAALEAGVDHVSAYALIVEDGTAL 205 (375)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeeeeecCCCChH
Confidence 2344455545544443235565555555665443
No 159
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.96 E-value=3.5e+02 Score=27.20 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=48.3
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCCh
Q 036948 99 YKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSP 178 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~ 178 (514)
-++|+++..+.|++.+|+++.-+. ++-....++.+++.|+++.+++.--+-+ +
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~---------------~~~~~~~i~~ak~~G~~v~~~i~~~~~~------------~ 145 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND---------------VRNLEVAIKAVKKAGKHVEGAICYTGSP------------V 145 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh---------------HHHHHHHHHHHHHCCCeEEEEEEecCCC------------C
Confidence 578999999999999999875432 3446788999999999988766321111 2
Q ss_pred HHHHHHHHHHHHHHHH
Q 036948 179 RIVNDFRDYAQVCFRE 194 (514)
Q Consensus 179 ~~~~~f~~ya~~~~~~ 194 (514)
...+.+.++++.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~ 161 (275)
T cd07937 146 HTLEYYVKLAKELEDM 161 (275)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 2345567777776553
No 160
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.94 E-value=2.9e+02 Score=28.34 Aligned_cols=110 Identities=15% Similarity=0.226 Sum_probs=60.8
Q ss_pred hHHHHHHHHHcCCC--eeeecccccccccCCCCCC--CCChHHHHHHHHHHHHHHHCCCccEEEeccC---CCchhhH--
Q 036948 99 YKEDVRIIKEMNLD--AYRFSISWSRILPNGKLSG--GVNKEGIRFYNNLINELTANGIQPFVTLFHW---DTPQALE-- 169 (514)
Q Consensus 99 ~~eDi~lm~~lG~~--~~R~si~Wsri~P~~~~~g--~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~---~~P~~l~-- 169 (514)
..+-++.+++.|+. ++=+.+.|......+...+ .+|.+-..--..||+.|+++|++.++.+.-+ +.|..-+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~ 105 (317)
T cd06598 26 VDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAV 105 (317)
T ss_pred HHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHH
Confidence 34555666666654 4444445643222110001 1222111224589999999999988877543 2333211
Q ss_pred hh-h-------------------C---CCCChHHHHHHHHHHHHHHHHhCCCc-ceEEeccCcccc
Q 036948 170 DE-Y-------------------G---GFLSPRIVNDFRDYAQVCFREFGDRV-KHWITLNEPWTY 211 (514)
Q Consensus 170 ~~-~-------------------g---gw~~~~~~~~f~~ya~~~~~~~gd~v-~~W~t~NEp~~~ 211 (514)
++ | + .+.||+..+.|.+..+.+ ... -| -+|+=+|||..+
T Consensus 106 ~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~--Gvdg~w~D~~Ep~~~ 168 (317)
T cd06598 106 KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQ--GVTGWWGDLGEPEVH 168 (317)
T ss_pred hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhC--CccEEEecCCCcccc
Confidence 10 0 0 266899999998877765 333 34 358899999754
No 161
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=23.80 E-value=78 Score=36.26 Aligned_cols=60 Identities=15% Similarity=0.354 Sum_probs=42.4
Q ss_pred hhchHHH-HHHHHHcCCCeeeecc--cc-ccc-----------------ccCCCCCCCCChHHHHHHHHHHHHHHHCCCc
Q 036948 96 YHRYKED-VRIIKEMNLDAYRFSI--SW-SRI-----------------LPNGKLSGGVNKEGIRFYNNLINELTANGIQ 154 (514)
Q Consensus 96 y~~~~eD-i~lm~~lG~~~~R~si--~W-sri-----------------~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~ 154 (514)
|..+.|+ +..+|+||.|++.+=- +- +.. -+.+. ..++|+ ++.|+++|++.||+
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYgt~~s-~~ri~e-----fK~lVd~aHs~GI~ 326 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYGTPES-PCRINE-----FKELVDKAHSLGIE 326 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeecccccccCCCc-ccchHH-----HHHHHHHHhhCCcE
Confidence 8888888 9999999999876522 23 222 11111 122334 89999999999999
Q ss_pred cEEEecc
Q 036948 155 PFVTLFH 161 (514)
Q Consensus 155 p~vtL~h 161 (514)
+++.+-|
T Consensus 327 VlLDVV~ 333 (757)
T KOG0470|consen 327 VLLDVVH 333 (757)
T ss_pred Eehhhhh
Confidence 9998654
No 162
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=23.80 E-value=4.3e+02 Score=27.35 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=43.4
Q ss_pred HHHHHHHHHHCCCccEEEeccC-----CCchhhHhh-------------h-----------CCCCChHHHHHHHHHHHHH
Q 036948 141 YNNLINELTANGIQPFVTLFHW-----DTPQALEDE-------------Y-----------GGFLSPRIVNDFRDYAQVC 191 (514)
Q Consensus 141 y~~~i~~l~~~gI~p~vtL~h~-----~~P~~l~~~-------------~-----------ggw~~~~~~~~f~~ya~~~ 191 (514)
-..|++.|+++|++.++-+.-+ +.|..-+.+ | -.|.||+.++.|.+.-+.+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 3589999999999987654322 122221110 0 1377899999988766665
Q ss_pred HHHhCCCcc-eEEeccCcccc
Q 036948 192 FREFGDRVK-HWITLNEPWTY 211 (514)
Q Consensus 192 ~~~~gd~v~-~W~t~NEp~~~ 211 (514)
+ ..-|+ +|+=.|||..+
T Consensus 146 ~---~~Gvdg~w~D~~Ep~~~ 163 (339)
T cd06604 146 V---DLGVDGIWNDMNEPAVF 163 (339)
T ss_pred h---hCCCceEeecCCCcccc
Confidence 4 23344 68889999865
No 163
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=23.56 E-value=4e+02 Score=29.95 Aligned_cols=80 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCc-cEEEeccCCCchhhHhh--------
Q 036948 101 EDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQ-PFVTLFHWDTPQALEDE-------- 171 (514)
Q Consensus 101 eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~-p~vtL~h~~~P~~l~~~-------- 171 (514)
+.+..+.++|..-+|+ -..+.+..+-...+-+.|++.|+. |+|.=.||+.-..+...
T Consensus 49 ~Qi~~L~~aGceiVRv--------------tvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~~a~~~vdkiRI 114 (606)
T PRK00694 49 RQICALQEWGCDIVRV--------------TVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAMHVADFVDKVRI 114 (606)
T ss_pred HHHHHHHHcCCCEEEE--------------cCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHHHHHHhcCceEE
Q ss_pred ----hCC----CCChHH------------HHHHHHHHHHHHHH
Q 036948 172 ----YGG----FLSPRI------------VNDFRDYAQVCFRE 194 (514)
Q Consensus 172 ----~gg----w~~~~~------------~~~f~~ya~~~~~~ 194 (514)
||. |...+. .+.|...++.|-++
T Consensus 115 NPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~ 157 (606)
T PRK00694 115 NPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRL 157 (606)
T ss_pred CCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHC
No 164
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=23.50 E-value=4e+02 Score=27.76 Aligned_cols=90 Identities=16% Similarity=0.269 Sum_probs=62.4
Q ss_pred HHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHH
Q 036948 102 DVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIV 181 (514)
Q Consensus 102 Di~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~ 181 (514)
+.+.+|++|.++..|=+=|. |++ +..+|..-.+|.+++.++|++++|-=++-+..++.+. .+. ++ .++.
T Consensus 111 s~~rike~GadavK~Llyy~---pD~--~~ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~--~~~-~~---~~ya 179 (325)
T TIGR01232 111 SAKRLKEQGANAVKFLLYYD---VDD--AEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI--PDN-GS---VEFA 179 (325)
T ss_pred cHHHHHHhCCCeEEEEEEeC---CCC--ChHHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC--CCC-Cc---HHHH
Confidence 36899999999999988774 443 2457888889999999999999999998888876554 121 22 2222
Q ss_pred HHHHHHHHHHHHHhCC---CcceE
Q 036948 182 NDFRDYAQVCFREFGD---RVKHW 202 (514)
Q Consensus 182 ~~f~~ya~~~~~~~gd---~v~~W 202 (514)
..--+.+-..++.|++ .|+.|
T Consensus 180 k~kP~~V~~a~kefs~~~~gvDVl 203 (325)
T TIGR01232 180 KVKPRKVNEAMKLFSEPRFNVDVL 203 (325)
T ss_pred HhChHHHHHHHHHhccCCCCCcEE
Confidence 2223444455667766 45555
No 165
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=23.40 E-value=1.5e+02 Score=25.75 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCCCeeeecc-ccccc-ccCCCCCCCCChHHHHHHHHHHHHHHHCCCcc
Q 036948 100 KEDVRIIKEMNLDAYRFSI-SWSRI-LPNGKLSGGVNKEGIRFYNNLINELTANGIQP 155 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si-~Wsri-~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p 155 (514)
++.++.|++.|++.+++|+ +-+.- ..+.. + .....+-..+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~--~--~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLRII--N--RGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHHHH--S--STSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhhhh--c--CCCCHHHHHHHHHHHHHcCCCc
Confidence 8999999999999999999 43332 11110 0 1122356779999999999996
No 166
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=23.29 E-value=3.7e+02 Score=24.42 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=37.0
Q ss_pred hHHHHHHHHHcCCCeeeeccc-cccc-ccCCCCCCCCChHHHHHHHHHHHHHHHCC-CccEE
Q 036948 99 YKEDVRIIKEMNLDAYRFSIS-WSRI-LPNGKLSGGVNKEGIRFYNNLINELTANG-IQPFV 157 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si~-Wsri-~P~~~~~g~~n~~gl~~y~~~i~~l~~~g-I~p~v 157 (514)
-++.++.|+++|++.+.+|+. ++.- ...- ....+. +.+.+.|+.+++.| +.+.+
T Consensus 99 ~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~--~~~~~~---~~~~~~i~~~~~~g~~~v~~ 155 (216)
T smart00729 99 TEELLEALKEAGVNRVSLGVQSGSDEVLKAI--NRGHTV---EDVLEAVEKLREAGPIKVST 155 (216)
T ss_pred CHHHHHHHHHcCCCeEEEecccCCHHHHHHh--cCCCCH---HHHHHHHHHHHHhCCcceEE
Confidence 368899999999999999994 5432 1111 011232 66889999999999 55444
No 167
>PRK09936 hypothetical protein; Provisional
Probab=22.81 E-value=7.5e+02 Score=25.42 Aligned_cols=62 Identities=15% Similarity=0.322 Sum_probs=43.8
Q ss_pred chHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhH
Q 036948 98 RYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALE 169 (514)
Q Consensus 98 ~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~ 169 (514)
.|++=++.++.+|+++. =+.|++.--+ +..+. -.+..+.++...+.||+.+|+|+ +| |.|.+
T Consensus 39 qWq~~~~~~~~~G~~tL--ivQWt~yG~~-~fg~~-----~g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q 100 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTL--VVQWTRYGDA-DFGGQ-----RGWLAKRLAAAQQAGLKLVVGLY-AD-PEFFM 100 (296)
T ss_pred HHHHHHHHHHHcCCcEE--EEEeeeccCC-Ccccc-----hHHHHHHHHHHHHcCCEEEEccc-CC-hHHHH
Confidence 36677889999999985 3479888211 11122 15788999999999999999995 34 44443
No 168
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.77 E-value=6.4e+02 Score=24.82 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=35.1
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccE
Q 036948 99 YKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPF 156 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~ 156 (514)
+++-+++++++|++.+=+++.=....+.. ..++. ...+.+-+.+.++||++.
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~~~~~---~~~~~---~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDERLAR---LDWSR---EQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCccccchhc---cCCCH---HHHHHHHHHHHHcCCcee
Confidence 78999999999999988864211111111 12233 346788888999999964
No 169
>PTZ00445 p36-lilke protein; Provisional
Probab=22.56 E-value=1.4e+02 Score=29.28 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=39.2
Q ss_pred HHHHHHcCCCeeeecccccccccCCCCCCCCChH---------HHHHHHHHHHHHHHCCCccEEEec
Q 036948 103 VRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKE---------GIRFYNNLINELTANGIQPFVTLF 160 (514)
Q Consensus 103 i~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~---------gl~~y~~~i~~l~~~gI~p~vtL~ 160 (514)
++++++.||+++=+.+.=+-|---. .|..+.. +-.-...++.+|++.||..+|-++
T Consensus 35 v~~L~~~GIk~Va~D~DnTlI~~Hs--gG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTf 99 (219)
T PTZ00445 35 VDLLNECGIKVIASDFDLTMITKHS--GGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTF 99 (219)
T ss_pred HHHHHHcCCeEEEecchhhhhhhhc--ccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEc
Confidence 6889999999999888766554211 0322222 334477899999999999887664
No 170
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=22.55 E-value=2.8e+02 Score=30.05 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=40.2
Q ss_pred hHHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCch
Q 036948 99 YKEDVRIIKEMNLDAYRFSI-SWS-RILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQ 166 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~ 166 (514)
=+|.+++|+++|++.+.+++ +=+ .+.-.- ....+. +-..+.++.+++.||..+..-.-+++|.
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~l--~r~~~~---~~~~~ai~~l~~~G~~~v~~dli~GlPg 214 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKAV--NRIQPF---EFTFALVEAARELGFTSINIDLIYGLPK 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHHh--CCCCCH---HHHHHHHHHHHHcCCCcEEEEEEccCCC
Confidence 36889999999999887777 332 222111 022233 4466889999999996544434556663
No 171
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=22.53 E-value=5.3e+02 Score=27.08 Aligned_cols=98 Identities=11% Similarity=0.050 Sum_probs=56.5
Q ss_pred hchHHHHHHHHHcCCCeeeecc-cc-cccccCCCCCC-CCChHHHHHHHHHHHHHHHCCCcc-EEEeccCCCchhhHhhh
Q 036948 97 HRYKEDVRIIKEMNLDAYRFSI-SW-SRILPNGKLSG-GVNKEGIRFYNNLINELTANGIQP-FVTLFHWDTPQALEDEY 172 (514)
Q Consensus 97 ~~~~eDi~lm~~lG~~~~R~si-~W-sri~P~~~~~g-~~n~~gl~~y~~~i~~l~~~gI~p-~vtL~h~~~P~~l~~~~ 172 (514)
..=.++++.|+++|++.+.+++ += ...++.-...| .=+. +.--+.++.+++.||+. -+++ =+++|.|..+.
T Consensus 159 ~lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~---~~rl~~i~~a~~aG~~~v~~g~-i~Gl~e~~~d~- 233 (366)
T TIGR02351 159 PLNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDF---RYRLNTPERAAKAGMRKIGIGA-LLGLDDWRTDA- 233 (366)
T ss_pred cCCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCH---HHHHHHHHHHHHcCCCeeceeE-EEeCchhHHHH-
Confidence 3567889999999999888888 32 33433310001 1122 33456789999999984 2222 23456554432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCCcceEEeccCcc
Q 036948 173 GGFLSPRIVNDFRDYAQVCFREFGDRVKHWITLNEPW 209 (514)
Q Consensus 173 ggw~~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~ 209 (514)
-..+..++.+-.+|.+ ....+.+|+..
T Consensus 234 ---------~~~a~~l~~L~~~~~~-~~~sv~~~~l~ 260 (366)
T TIGR02351 234 ---------FFTAYHLRYLQKKYWK-TEISISVPRLR 260 (366)
T ss_pred ---------HHHHHHHHHHHHHcCC-CCccccccccc
Confidence 2244445555555543 34557888755
No 172
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=22.10 E-value=3.3e+02 Score=27.89 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=44.7
Q ss_pred HHHHHHHHHHCCCccEEEeccCCCc---hhhH--hh------------h-----------CCCCChHHHHHHHHHHHHHH
Q 036948 141 YNNLINELTANGIQPFVTLFHWDTP---QALE--DE------------Y-----------GGFLSPRIVNDFRDYAQVCF 192 (514)
Q Consensus 141 y~~~i~~l~~~gI~p~vtL~h~~~P---~~l~--~~------------~-----------ggw~~~~~~~~f~~ya~~~~ 192 (514)
-..||++|+++|++.++.+.-+-.| ..-+ ++ + -.+.||+..+.|.+..+..+
T Consensus 75 p~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 154 (317)
T cd06599 75 PAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEAL 154 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHH
Confidence 4589999999999988766543222 1110 00 0 01578899999988776555
Q ss_pred HHhCCCcceEEeccCccc
Q 036948 193 REFGDRVKHWITLNEPWT 210 (514)
Q Consensus 193 ~~~gd~v~~W~t~NEp~~ 210 (514)
...|- --+|+=.|||.+
T Consensus 155 ~~~Gv-dg~w~D~~E~~~ 171 (317)
T cd06599 155 LDLGI-DSTWNDNNEYEI 171 (317)
T ss_pred hcCCC-cEEEecCCCCcc
Confidence 55543 246888999974
No 173
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=22.01 E-value=68 Score=29.67 Aligned_cols=63 Identities=8% Similarity=0.031 Sum_probs=42.0
Q ss_pred chhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEE
Q 036948 94 DSYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFV 157 (514)
Q Consensus 94 d~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~v 157 (514)
......++-+++++.+|++.+++...+-...+... ....-...++.++.+.+.+.++|+++.+
T Consensus 68 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 68 EALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDD-TEENWERLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSS-HHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCceeecCcccccccCCC-HHHHHHHHHHHHHHHHhhhhhhcceEEE
Confidence 34667889999999999999999976411111110 0011123557788889999999987555
No 174
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=21.96 E-value=48 Score=26.46 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=15.6
Q ss_pred CchhhchH--HHHHHHHHcCC
Q 036948 93 VDSYHRYK--EDVRIIKEMNL 111 (514)
Q Consensus 93 ~d~y~~~~--eDi~lm~~lG~ 111 (514)
.|||..|+ +|++.|+++|+
T Consensus 46 adFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 46 ADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHccChHHHHHHHHHcCC
Confidence 47887774 78999999997
No 175
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=21.50 E-value=4e+02 Score=27.87 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCC
Q 036948 100 KEDVRIIKEMNLDAYRFSI-SWS-RILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLS 177 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~ 177 (514)
+|.+++|+++|++.+-+++ +=+ ++...- ....+. +-..+.++.+++.|+.++-.-.=+++|.
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l--~R~~~~---~~~~~ai~~lr~~G~~~v~~dlI~GlPg----------- 166 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQL--NRTHTI---QDSKEAINLLHKNGIYNISCDFLYCLPI----------- 166 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc--CCCCCH---HHHHHHHHHHHHcCCCcEEEEEeecCCC-----------
Confidence 6899999999999777777 332 333332 022333 3467899999999998554433456663
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcceEEeccCcc
Q 036948 178 PRIVNDFRDYAQVCFREFGDRVKHWITLNEPW 209 (514)
Q Consensus 178 ~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~ 209 (514)
++.+.|.+=.+.+.+-=-+.|..+...=||+
T Consensus 167 -qt~e~~~~tl~~~~~l~p~~is~y~L~~~~g 197 (353)
T PRK05904 167 -LKLKDLDEVFNFILKHKINHISFYSLEIKEG 197 (353)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEEEeeEecCC
Confidence 2344555555554433234555554444555
No 176
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=21.35 E-value=2.9e+02 Score=29.71 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCeeeecc-cc-cccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccE-EEeccCCCch
Q 036948 100 KEDVRIIKEMNLDAYRFSI-SW-SRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPF-VTLFHWDTPQ 166 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si-~W-sri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~-vtL~h~~~P~ 166 (514)
++.+++|+++|++.+.+++ += .++.-.-. ...+. +-..+.|+.|++.|+..+ +.| =+++|.
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~--R~~~~---~~~~~ai~~l~~~g~~~i~~dl-I~GlP~ 204 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHALH--RPQKR---ADVHQALEWIRAAGFPILNIDL-IYGIPG 204 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHhC--CCCCH---HHHHHHHHHHHHcCCCeEEEEe-ecCCCC
Confidence 5889999999999777777 44 23333320 11233 457789999999999864 333 456663
No 177
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=21.34 E-value=7.4e+02 Score=24.84 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=60.2
Q ss_pred hhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCC
Q 036948 96 YHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGF 175 (514)
Q Consensus 96 y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw 175 (514)
-.+..+-++.+|+.|+. ++.+++.+--.|.. +..+. +++.++++.+.+.|..- +.| .+- .|.
T Consensus 113 ~~~~~~~v~~ak~~G~~-v~~~i~~~f~~~~~---~~~~~---~~~~~~~~~~~~~Ga~~-i~l---------~DT-~G~ 174 (274)
T cd07938 113 LERFEPVAELAKAAGLR-VRGYVSTAFGCPYE---GEVPP---ERVAEVAERLLDLGCDE-ISL---------GDT-IGV 174 (274)
T ss_pred HHHHHHHHHHHHHCCCe-EEEEEEeEecCCCC---CCCCH---HHHHHHHHHHHHcCCCE-EEE---------CCC-CCc
Confidence 34556668999999984 77777776656776 67775 88999999999999873 333 222 455
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCcceEEeccC
Q 036948 176 LSPRIVNDFRDYAQVCFREFGDRVKHWITLNE 207 (514)
Q Consensus 176 ~~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NE 207 (514)
..| ..+.++++.+.+++++..--+++-|-
T Consensus 175 ~~P---~~v~~lv~~l~~~~~~~~i~~H~Hnd 203 (274)
T cd07938 175 ATP---AQVRRLLEAVLERFPDEKLALHFHDT 203 (274)
T ss_pred cCH---HHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 554 34556666666777553233444444
No 178
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.32 E-value=1.6e+02 Score=29.24 Aligned_cols=61 Identities=2% Similarity=0.043 Sum_probs=39.8
Q ss_pred hhhchHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEE
Q 036948 95 SYHRYKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVT 158 (514)
Q Consensus 95 ~y~~~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vt 158 (514)
.-.++++=+++++++|++.+++.- .+..+.+. ....-...++.++++.+.+.++||+..+=
T Consensus 92 ~~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~~-~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 92 GLEIMEKAIQLARDLGIRTIQLAG--YDVYYEEH-DEETRRRFREGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHHHHhCCCEEEecC--cccccCcC-CHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 445678889999999999999853 11111110 01111234577888899999999976653
No 179
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.25 E-value=2.4e+02 Score=30.38 Aligned_cols=94 Identities=17% Similarity=0.318 Sum_probs=62.7
Q ss_pred hchHHHHHHHHHcCCCeeeecc-------------cccccccCCC-CCCCCChHHHHHHHHHHHHHHHCCCccEE-----
Q 036948 97 HRYKEDVRIIKEMNLDAYRFSI-------------SWSRILPNGK-LSGGVNKEGIRFYNNLINELTANGIQPFV----- 157 (514)
Q Consensus 97 ~~~~eDi~lm~~lG~~~~R~si-------------~Wsri~P~~~-~~g~~n~~gl~~y~~~i~~l~~~gI~p~v----- 157 (514)
.+..+-++.++.||+|+.=+.+ .|+-..|--. ....+|. ...+|++.+++||+++.
T Consensus 64 ~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~~~~~~~~~g~Dp-----La~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 64 QELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGLPGVLGVDPGYDP-----LAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred HHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCcCcccCCCCCCCh-----HHHHHHHHHhcCCeeeechhhc
Confidence 4567789999999999988776 2333332200 0123444 67999999999999765
Q ss_pred ------EeccCCCchhhHhh--------hCC-----CCC---hHHHHHHHHHHHHHHHHh
Q 036948 158 ------TLFHWDTPQALEDE--------YGG-----FLS---PRIVNDFRDYAQVCFREF 195 (514)
Q Consensus 158 ------tL~h~~~P~~l~~~--------~gg-----w~~---~~~~~~f~~ya~~~~~~~ 195 (514)
+-.|-..|.|+..+ .+| |++ |++.+...+-+..++++|
T Consensus 139 ~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y 198 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY 198 (418)
T ss_pred ccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC
Confidence 12244445554433 244 444 588888899999999999
No 180
>PRK01060 endonuclease IV; Provisional
Probab=21.24 E-value=4.8e+02 Score=25.73 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=36.7
Q ss_pred hHHHHHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCcc
Q 036948 99 YKEDVRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQP 155 (514)
Q Consensus 99 ~~eDi~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p 155 (514)
+++=++.++++|++++-+.+.-++.... +..+. +..+.+-+.+.++|++.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~----~~~~~---~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR----KPLEE---LNIEAFKAACEKYGISP 63 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC----CCCCH---HHHHHHHHHHHHcCCCC
Confidence 7788999999999999998766554432 23455 33556667788999984
No 181
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=21.07 E-value=2.7e+02 Score=32.02 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCChHHHHHHHHHHHHHHH
Q 036948 140 FYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLSPRIVNDFRDYAQVCFR 193 (514)
Q Consensus 140 ~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~~~~~~~f~~ya~~~~~ 193 (514)
.+..+++.++++|+..=++..|-.++.-+..+||. .-..+++--.+|++.|-+
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e~ 263 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 263 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHHH
Confidence 34459999999999999999999999999999875 444566666666666544
No 182
>PRK05660 HemN family oxidoreductase; Provisional
Probab=20.91 E-value=3.7e+02 Score=28.32 Aligned_cols=94 Identities=11% Similarity=0.036 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCCC
Q 036948 100 KEDVRIIKEMNLDAYRFSI-SWS-RILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFLS 177 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~~ 177 (514)
++.++.|+++|++.+.+|| +=+ .+.-.- ....+. +-..+.++.+++.|++++-.-.-+++|.
T Consensus 107 ~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l--~r~~~~---~~~~~ai~~~~~~G~~~v~~dli~Glpg----------- 170 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGVQSFSEEKLKRL--GRIHGP---DEAKRAAKLAQGLGLRSFNLDLMHGLPD----------- 170 (378)
T ss_pred HHHHHHHHHcCCCEEEeccCcCCHHHHHHh--CCCCCH---HHHHHHHHHHHHcCCCeEEEEeecCCCC-----------
Confidence 4899999999999888877 333 233221 012222 3456789999999998753333556664
Q ss_pred hHHHHHHHHHHHHHHHHhCCCcceEEeccCccc
Q 036948 178 PRIVNDFRDYAQVCFREFGDRVKHWITLNEPWT 210 (514)
Q Consensus 178 ~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~~ 210 (514)
++.+.+.+-.+.+.+.=-+++..+...=||+.
T Consensus 171 -qt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 171 -QSLEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred -CCHHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 23455666666665544567777766666653
No 183
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=20.72 E-value=4e+02 Score=27.68 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-ccccCCCCCCC-CChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHhhhCCCC
Q 036948 100 KEDVRIIKEMNLDAYRFSI-SWS-RILPNGKLSGG-VNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALEDEYGGFL 176 (514)
Q Consensus 100 ~eDi~lm~~lG~~~~R~si-~Ws-ri~P~~~~~g~-~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~~~ggw~ 176 (514)
++.+++|+++|+|-+.+++ +-+ .+...- |+ .+. +-..+.++.+++.|+..+-.-.=+++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l---gR~~~~---~~~~~ai~~lr~~g~~~v~iDli~GlPg---------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL---GRIHSQ---KQIIKAIENAKKAGFENISIDLIYDTPL---------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc---CCCCCH---HHHHHHHHHHHHcCCCEEEEEeecCCCC----------
Confidence 6889999999999888888 553 333332 32 233 4477899999999998653323456663
Q ss_pred ChHHHHHHHHHHHHHHHHhCCCcceEEeccCcc
Q 036948 177 SPRIVNDFRDYAQVCFREFGDRVKHWITLNEPW 209 (514)
Q Consensus 177 ~~~~~~~f~~ya~~~~~~~gd~v~~W~t~NEp~ 209 (514)
++.+.|.+-.+.+.+-=-++|......=||+
T Consensus 162 --qt~~~~~~~l~~~~~l~~~~is~y~L~~~~g 192 (350)
T PRK08446 162 --DNKKLLKEELKLAKELPINHLSAYSLTIEEN 192 (350)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEeccceecCC
Confidence 2344455555554442234444444333444
No 184
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=20.33 E-value=3.3e+02 Score=29.38 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=52.1
Q ss_pred hhchHHH-----HHHHHHcCCCeeeecccccccccCCCCCCCCChHHHHHHHHHHHHHHHCCCccEEEeccCCCchhhHh
Q 036948 96 YHRYKED-----VRIIKEMNLDAYRFSISWSRILPNGKLSGGVNKEGIRFYNNLINELTANGIQPFVTLFHWDTPQALED 170 (514)
Q Consensus 96 y~~~~eD-----i~lm~~lG~~~~R~si~Wsri~P~~~~~g~~n~~gl~~y~~~i~~l~~~gI~p~vtL~h~~~P~~l~~ 170 (514)
|.+|.+| +++..+-|++.||+-= . .|. +.-...-|...+++|-....+++.-..|.
T Consensus 92 YrhyaDDvVe~Fv~ka~~nGidvfRiFD-------A------lND--~RNl~~ai~a~kk~G~h~q~~i~YT~sPv---- 152 (472)
T COG5016 92 YRHYADDVVEKFVEKAAENGIDVFRIFD-------A------LND--VRNLKTAIKAAKKHGAHVQGTISYTTSPV---- 152 (472)
T ss_pred ccCCchHHHHHHHHHHHhcCCcEEEech-------h------ccc--hhHHHHHHHHHHhcCceeEEEEEeccCCc----
Confidence 6777777 5888999999998642 2 121 23356788999999999999987766663
Q ss_pred hhCCCCChHHHHHHHHHHHHHHHH
Q 036948 171 EYGGFLSPRIVNDFRDYAQVCFRE 194 (514)
Q Consensus 171 ~~ggw~~~~~~~~f~~ya~~~~~~ 194 (514)
.+++.|.++|+.+.+-
T Consensus 153 --------Ht~e~yv~~akel~~~ 168 (472)
T COG5016 153 --------HTLEYYVELAKELLEM 168 (472)
T ss_pred --------ccHHHHHHHHHHHHHc
Confidence 3466788888776654
Done!