BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036949
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P43255|CSN8_ARATH COP9 signalosome complex subunit 8 OS=Arabidopsis thaliana GN=CSN8
PE=1 SV=1
Length = 197
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 66/81 (81%)
Query: 1 LYTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVT 60
LYTKRMFQLL+SAYSTI+ D ALFLGM EDDA YV + GWT+D AS+M +VKKQ +
Sbjct: 117 LYTKRMFQLLLSAYSTITIHDLALFLGMTEDDATTYVVENGWTVDAASQMASVKKQAVKR 176
Query: 61 EQKLDPSKMQCLTEYVFHLEH 81
EQK+D SK+Q LTEYVFHLEH
Sbjct: 177 EQKVDSSKLQRLTEYVFHLEH 197
>sp|Q6P637|CSN8_XENTR COP9 signalosome complex subunit 8 OS=Xenopus tropicalis GN=csn8
PE=2 SV=1
Length = 193
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQK 63
+R F L+ AY++IS D A F+G++ ++A V +QGW D A+RM+ KK P
Sbjct: 115 RRAFGLVSQAYTSISADDFAAFVGLSVEEAVKGVIEQGWQADLATRMVMPKK-PDSAPLS 173
Query: 64 LDPSKMQC--LTEYVFHLEH 81
L P++ Q LT+YV LE+
Sbjct: 174 LIPNEQQLARLTDYVAFLEN 193
>sp|Q7ZUZ0|CSN8_DANRE COP9 signalosome complex subunit 8 OS=Danio rerio GN=cops8 PE=2
SV=1
Length = 191
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQK 63
+R + L+ AY++IS +D A F+G + ++A V GW DP +RM+ +K P
Sbjct: 113 RRAYGLVAQAYTSISAEDFAAFVGYSVEEAVKGVVSHGWQADPNTRMIMPQK-PDPPPVS 171
Query: 64 LDPSKMQC--LTEYVFHLEH 81
L P++ Q LT+YV LE+
Sbjct: 172 LVPNEQQLARLTDYVAFLEN 191
>sp|Q6GQA6|CSN8_XENLA COP9 signalosome complex subunit 8 OS=Xenopus laevis GN=csn8 PE=2
SV=2
Length = 195
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQK 63
+R F L+ AY++IS D A F+G+ ++A V +QGW D A+ M+ KK P
Sbjct: 117 QRAFGLVSQAYTSISADDFAAFVGLPVEEAVKGVLEQGWQADSATGMVMPKK-PDSAPLS 175
Query: 64 LDPSKMQC--LTEYVFHLEH 81
L P++ Q LT+YV LE+
Sbjct: 176 LIPNEQQLARLTDYVAFLEN 195
>sp|Q75K24|CSN8_DICDI COP9 signalosome complex subunit 8 OS=Dictyostelium discoideum
GN=csn8 PE=1 SV=1
Length = 196
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTE 61
+ +R F+L+ +AYS+I+ D + +LG++ +D + + W D AS T+K P+ +
Sbjct: 114 FQQRTFELISNAYSSITVNDCSSYLGISPEDTIKFTTSKCWEHDKASN--TLKPVPIQKQ 171
Query: 62 QKLDPS---KMQCLTEYVFHLE 80
P+ +++ LT YV LE
Sbjct: 172 SSELPTGNQQIRSLTSYVLFLE 193
>sp|Q6P4Z9|CSN8_RAT COP9 signalosome complex subunit 8 OS=Rattus norvegicus GN=Cops8
PE=2 SV=1
Length = 209
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ------- 56
+R F L+ AY++I D A F+G+ ++A V +QGW D +RM+ +K
Sbjct: 115 RRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPAPGALDV 174
Query: 57 ------PLVTEQKLDP----SKMQCLTEYVFHLEH 81
PL + P ++ LT+YV LE+
Sbjct: 175 SLNRFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209
>sp|Q8VBV7|CSN8_MOUSE COP9 signalosome complex subunit 8 OS=Mus musculus GN=Cops8 PE=1
SV=1
Length = 209
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ------- 56
+R F L+ AY++I D A F+G+ ++A V +QGW D +RM+ +K
Sbjct: 115 RRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGVLEQGWQADSTTRMVLPRKPASGTLDV 174
Query: 57 ------PLVTEQKLDP----SKMQCLTEYVFHLEH 81
PL + P ++ LT+YV LE+
Sbjct: 175 SLNRFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209
>sp|Q5RF54|CSN8_PONAB COP9 signalosome complex subunit 8 OS=Pongo abelii GN=COPS8 PE=2
SV=1
Length = 209
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ------- 56
+R F L+ AY++I D A F+G+ ++A + +QGW D +RM+ +K
Sbjct: 115 RRAFALVSQAYTSIVADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDV 174
Query: 57 ------PLVTEQKLDP----SKMQCLTEYVFHLEH 81
PL + P ++ LT+YV LE+
Sbjct: 175 SFNKFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209
>sp|Q99627|CSN8_HUMAN COP9 signalosome complex subunit 8 OS=Homo sapiens GN=COPS8 PE=1
SV=1
Length = 209
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 17/95 (17%)
Query: 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQ------- 56
+R F L+ AY++I D A F+G+ ++A + +QGW D +RM+ +K
Sbjct: 115 RRAFALVSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDV 174
Query: 57 ------PLVTEQKLDP----SKMQCLTEYVFHLEH 81
PL + P ++ LT+YV LE+
Sbjct: 175 SFNKFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN 209
>sp|Q5NDE3|GTDC2_TETNG Glycosyltransferase-like domain-containing protein 2 OS=Tetraodon
nigroviridis GN=gtdc2 PE=2 SV=1
Length = 579
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 25 FLGMNEDDAAYYVQQQGWTLDPASRM--LTVKKQPLVTEQKLDPSKMQCLTE 74
FL ++ED A V +GW P + L KQPL+ EQ + K+ C T+
Sbjct: 181 FLDLDED--ARLVFMEGWDEGPHFHLYRLLSDKQPLLKEQLRNFGKLMCFTK 230
>sp|Q5NDE4|GTDC2_TAKRU Glycosyltransferase-like domain-containing protein 2 OS=Takifugu
rubripes GN=gtdc2 PE=2 SV=1
Length = 590
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 28 MNEDDAAYYVQQQGWTLDPASRM--LTVKKQPLVTEQKLDPSKMQCLTE 74
++ D+ A V +GW P + L KQPL+ EQ + K+ C T+
Sbjct: 182 LDSDEDARLVFMEGWEEGPHFELYRLLSNKQPLLKEQLRNFGKLMCFTK 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,217,270
Number of Sequences: 539616
Number of extensions: 800761
Number of successful extensions: 1950
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1938
Number of HSP's gapped (non-prelim): 14
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)