Query 036949
Match_columns 81
No_of_seqs 102 out of 178
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 11:33:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036949.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036949hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rz4_A Eukaryotic translation 99.7 2E-17 6.7E-22 113.2 5.4 80 1-81 137-221 (226)
2 4b0z_A RPN12, 26S proteasome r 99.4 1.4E-13 4.9E-18 93.7 6.1 52 2-54 176-228 (229)
3 4b4t_T 26S proteasome regulato 99.3 1.7E-12 5.7E-17 90.7 5.4 55 2-57 185-240 (274)
4 3t5v_A Nuclear mRNA export pro 98.2 3.4E-06 1.2E-10 59.9 6.1 47 2-48 206-257 (316)
5 1ufm_A COP9 complex subunit 4; 97.5 0.00018 6.2E-09 42.0 4.8 53 2-54 16-74 (84)
6 3txn_A 26S proteasome regulato 96.8 0.0032 1.1E-07 45.7 6.5 75 2-77 302-384 (394)
7 4b4t_P 26S proteasome regulato 96.4 0.01 3.5E-07 43.1 6.7 52 2-54 345-404 (445)
8 4b4t_R RPN7, 26S proteasome re 95.9 0.012 4.1E-07 42.4 4.9 58 2-59 333-396 (429)
9 4b4t_Q 26S proteasome regulato 95.5 0.041 1.4E-06 37.5 6.3 75 2-77 342-424 (434)
10 2heo_A Z-DNA binding protein 1 95.1 0.12 4.2E-06 28.1 6.3 43 2-44 11-56 (67)
11 1y6u_A XIS, excisionase from t 93.8 0.14 4.8E-06 28.6 4.6 39 16-54 16-57 (70)
12 2htj_A P fimbrial regulatory p 92.5 0.28 9.6E-06 27.1 4.7 42 2-44 1-45 (81)
13 2lju_A Putative oxidoreductase 91.7 0.13 4.5E-06 31.2 2.8 20 26-45 64-84 (108)
14 3lsg_A Two-component response 89.9 0.65 2.2E-05 26.5 4.5 42 2-43 3-47 (103)
15 2jya_A AGR_C_3324P, uncharacte 89.7 0.14 4.7E-06 31.1 1.5 20 26-45 56-76 (106)
16 2jt1_A PEFI protein; solution 89.3 0.99 3.4E-05 25.4 4.9 41 2-43 5-54 (77)
17 2k9s_A Arabinose operon regula 89.3 0.83 2.8E-05 26.2 4.8 40 4-43 6-48 (107)
18 4b4t_S RPN3, 26S proteasome re 88.5 0.054 1.9E-06 40.8 -1.1 36 3-38 388-424 (523)
19 1nd9_A Translation initiation 87.8 0.43 1.5E-05 23.8 2.5 27 16-42 2-28 (49)
20 3mn2_A Probable ARAC family tr 87.2 1.4 4.8E-05 25.2 4.9 37 4-40 5-42 (108)
21 3e21_A HFAF1, FAS-associated f 87.2 0.11 3.8E-06 26.8 -0.1 29 19-47 9-38 (45)
22 3oou_A LIN2118 protein; protei 86.7 1.5 5.3E-05 25.1 4.8 40 4-43 8-49 (108)
23 3oio_A Transcriptional regulat 86.6 1.2 4.2E-05 25.7 4.4 40 4-43 10-51 (113)
24 2krk_A 26S protease regulatory 86.0 0.99 3.4E-05 25.6 3.6 37 3-39 16-56 (86)
25 1ng7_A Poliovirus 3A-N, genome 85.6 0.33 1.1E-05 26.6 1.3 23 22-44 22-45 (60)
26 3mkl_A HTH-type transcriptiona 85.6 2.2 7.5E-05 24.9 5.2 41 3-43 9-50 (120)
27 3f2g_A Alkylmercury lyase; MER 85.5 3.2 0.00011 27.9 6.4 47 5-52 26-73 (220)
28 3to7_A Histone acetyltransfera 85.2 1.8 6.2E-05 30.2 5.2 52 3-54 195-246 (276)
29 3gbg_A TCP pilus virulence reg 84.9 1.8 6.3E-05 28.4 5.1 40 4-43 172-212 (276)
30 3dkw_A DNR protein; CRP-FNR, H 84.0 4.1 0.00014 25.4 6.2 54 2-55 153-220 (227)
31 3dv8_A Transcriptional regulat 83.9 4.6 0.00016 25.0 6.4 51 2-52 148-208 (220)
32 4b4t_O 26S proteasome regulato 83.5 1.7 5.8E-05 30.9 4.7 42 12-53 303-350 (393)
33 2gmg_A Hypothetical protein PF 83.4 0.51 1.7E-05 28.5 1.6 29 2-32 12-43 (105)
34 1bl0_A Protein (multiple antib 83.0 1.7 5.8E-05 25.8 3.9 37 4-40 14-51 (129)
35 3aji_B S6C, proteasome (prosom 82.5 1.9 6.6E-05 23.7 3.8 37 3-39 6-46 (83)
36 1oyi_A Double-stranded RNA-bin 81.1 1.8 6.1E-05 24.8 3.3 43 2-46 18-63 (82)
37 1z96_A DNA-damage, UBA-domain 80.1 1.5 5.1E-05 21.0 2.4 26 19-45 8-33 (40)
38 2pq8_A Probable histone acetyl 80.0 1.4 4.9E-05 30.7 3.1 52 3-54 195-246 (278)
39 2o3f_A Putative HTH-type trans 79.9 3.7 0.00013 24.2 4.6 40 4-43 24-66 (111)
40 2oqg_A Possible transcriptiona 79.5 5 0.00017 22.7 5.0 41 2-44 22-65 (114)
41 3rkx_A Biotin-[acetyl-COA-carb 79.3 12 0.0004 26.0 7.7 45 2-46 4-52 (323)
42 2ou2_A Histone acetyltransfera 79.1 2.8 9.4E-05 29.3 4.3 52 3-54 193-250 (280)
43 1u8b_A ADA polyprotein; protei 79.0 2.1 7.1E-05 25.5 3.3 34 5-39 83-116 (133)
44 2d1h_A ST1889, 109AA long hypo 78.5 6.4 0.00022 21.7 5.3 40 5-44 25-67 (109)
45 2kko_A Possible transcriptiona 78.2 3.4 0.00012 23.8 4.0 41 2-44 26-69 (108)
46 2hr3_A Probable transcriptiona 78.1 5.8 0.0002 23.2 5.1 40 5-44 39-81 (147)
47 3cuo_A Uncharacterized HTH-typ 78.0 5.7 0.00019 21.8 4.8 42 2-44 25-69 (99)
48 2pjp_A Selenocysteine-specific 77.8 7.1 0.00024 23.0 5.5 33 14-46 78-113 (121)
49 2kfs_A Conserved hypothetical 77.8 3.5 0.00012 26.2 4.2 41 15-57 30-73 (148)
50 2oz6_A Virulence factor regula 77.8 9.6 0.00033 23.3 6.9 38 16-53 164-204 (207)
51 3e11_A Predicted zincin-like m 77.7 1.5 5.1E-05 26.5 2.3 22 17-42 93-114 (114)
52 3iwz_A CAP-like, catabolite ac 77.2 11 0.00036 23.5 7.0 52 2-53 160-227 (230)
53 1xn7_A Hypothetical protein YH 76.8 6.9 0.00024 21.8 4.9 39 4-43 5-46 (78)
54 3jth_A Transcription activator 76.8 3.7 0.00013 22.9 3.8 41 2-44 24-67 (98)
55 1y0u_A Arsenical resistance op 76.5 6.1 0.00021 22.0 4.7 41 2-45 32-75 (96)
56 1sfx_A Conserved hypothetical 75.7 7.8 0.00027 21.2 5.3 41 3-44 22-65 (109)
57 2cg4_A Regulatory protein ASNC 75.5 6.4 0.00022 23.7 4.9 42 2-44 9-53 (152)
58 1qbj_A Protein (double-strande 75.3 7.5 0.00026 21.8 4.8 41 3-44 12-58 (81)
59 1j9i_A GPNU1 DBD;, terminase s 74.8 2.1 7.1E-05 22.8 2.2 23 17-39 3-25 (68)
60 2k02_A Ferrous iron transport 74.8 7.2 0.00025 22.4 4.7 39 4-43 5-46 (87)
61 2fmy_A COOA, carbon monoxide o 74.7 11 0.00036 23.5 5.9 30 16-45 167-199 (220)
62 3iwf_A Transcription regulator 74.6 5.4 0.00019 23.4 4.2 39 5-43 21-62 (107)
63 3la7_A Global nitrogen regulat 74.6 13 0.00044 23.7 6.4 39 16-54 193-234 (243)
64 1r1u_A CZRA, repressor protein 74.5 7.9 0.00027 22.0 4.9 41 2-44 27-70 (106)
65 2lkp_A Transcriptional regulat 74.2 7.9 0.00027 22.2 4.9 40 3-44 34-76 (119)
66 2dbb_A Putative HTH-type trans 74.1 7.4 0.00025 23.4 4.9 41 3-44 11-54 (151)
67 1je8_A Nitrate/nitrite respons 74.0 8.8 0.0003 21.0 5.0 23 14-36 34-56 (82)
68 2cfx_A HTH-type transcriptiona 73.8 7.8 0.00027 23.2 5.0 42 2-44 6-50 (144)
69 1g2h_A Transcriptional regulat 73.8 7.7 0.00026 20.2 4.4 36 3-41 23-58 (61)
70 1jko_C HIN recombinase, DNA-in 73.6 5.1 0.00017 19.1 3.4 35 4-41 12-46 (52)
71 2fbh_A Transcriptional regulat 73.4 8.4 0.00029 22.3 5.0 41 4-44 40-83 (146)
72 2gxg_A 146AA long hypothetical 73.4 7.3 0.00025 22.6 4.7 38 5-44 41-81 (146)
73 2cyy_A Putative HTH-type trans 73.1 8.1 0.00028 23.3 4.9 41 2-43 8-51 (151)
74 1cv8_A Staphopain; cysteine pr 72.9 5.7 0.00019 25.9 4.3 37 8-45 46-82 (174)
75 1ub9_A Hypothetical protein PH 72.9 9.4 0.00032 20.8 5.1 41 3-44 18-61 (100)
76 1v92_A NSFL1 cofactor P47; 3-h 72.0 4.4 0.00015 19.9 2.9 28 19-46 9-36 (46)
77 2w25_A Probable transcriptiona 71.8 9.5 0.00032 22.9 5.0 42 2-44 8-52 (150)
78 1zyb_A Transcription regulator 71.6 13 0.00044 23.5 5.8 52 2-53 164-226 (232)
79 3deu_A Transcriptional regulat 71.5 8.3 0.00028 23.5 4.8 40 5-44 57-99 (166)
80 1ku9_A Hypothetical protein MJ 71.3 11 0.00037 21.8 5.1 41 4-44 29-72 (152)
81 3oop_A LIN2960 protein; protei 71.3 10 0.00034 22.1 5.0 39 5-44 41-82 (143)
82 1u2w_A CADC repressor, cadmium 71.3 10 0.00035 22.2 5.0 42 2-44 43-87 (122)
83 2dzn_B 26S protease regulatory 70.6 1.5 5.2E-05 24.3 1.1 37 3-39 3-43 (82)
84 1tc3_C Protein (TC3 transposas 70.5 6.8 0.00023 18.2 4.4 33 3-38 11-43 (51)
85 2zcw_A TTHA1359, transcription 70.0 16 0.00055 22.3 6.8 51 2-52 119-185 (202)
86 1r1t_A Transcriptional repress 69.9 9.6 0.00033 22.5 4.6 41 2-44 47-90 (122)
87 3e7l_A Transcriptional regulat 69.8 9.9 0.00034 19.8 4.7 27 18-44 34-60 (63)
88 1ngr_A P75 low affinity neurot 69.8 4.6 0.00016 22.9 3.0 34 1-38 10-43 (85)
89 3f6o_A Probable transcriptiona 69.5 7.7 0.00026 22.5 4.1 41 2-44 19-62 (118)
90 2wvx_A Mannosidase, putative a 69.5 6.7 0.00023 30.7 4.7 54 4-57 440-496 (744)
91 3e97_A Transcriptional regulat 69.3 17 0.00057 22.6 6.0 38 16-53 175-215 (231)
92 2l0k_A Stage III sporulation p 68.2 12 0.0004 21.6 4.6 34 3-38 9-42 (93)
93 2ia0_A Putative HTH-type trans 68.2 11 0.00039 23.5 4.9 42 2-44 18-62 (171)
94 2oa4_A SIR5; structure, struct 68.0 13 0.00043 22.0 4.8 35 5-39 39-73 (101)
95 2pn6_A ST1022, 150AA long hypo 67.7 10 0.00035 22.6 4.5 42 2-44 4-48 (150)
96 2zp2_A Kinase A inhibitor; KIP 67.7 5.4 0.00018 25.1 3.2 31 16-46 14-44 (141)
97 2p5v_A Transcriptional regulat 67.6 13 0.00045 22.6 5.1 41 3-44 12-55 (162)
98 3ryp_A Catabolite gene activat 67.4 18 0.00063 22.0 6.9 37 16-52 167-206 (210)
99 3pqk_A Biofilm growth-associat 67.2 8.7 0.0003 21.5 3.9 41 2-44 24-67 (102)
100 4ev0_A Transcription regulator 67.0 14 0.00048 22.6 5.2 51 2-52 142-202 (216)
101 1uly_A Hypothetical protein PH 67.0 10 0.00036 24.3 4.6 41 2-44 21-64 (192)
102 1j5y_A Transcriptional regulat 66.6 12 0.00042 23.5 4.9 35 3-37 23-57 (187)
103 2y75_A HTH-type transcriptiona 66.4 17 0.00058 21.2 7.5 41 5-45 13-58 (129)
104 2qvo_A Uncharacterized protein 66.4 13 0.00044 20.6 4.5 29 17-45 31-62 (95)
105 2e1c_A Putative HTH-type trans 66.1 13 0.00045 23.2 4.9 41 2-43 28-71 (171)
106 2fa5_A Transcriptional regulat 65.9 15 0.00052 21.7 5.0 39 5-44 53-94 (162)
107 2zkz_A Transcriptional repress 65.9 15 0.00053 20.5 5.0 37 2-39 28-64 (99)
108 2gau_A Transcriptional regulat 65.6 22 0.00074 22.1 6.6 50 2-51 153-218 (232)
109 3fm5_A Transcriptional regulat 65.6 12 0.0004 22.0 4.4 40 5-44 43-85 (150)
110 1fse_A GERE; helix-turn-helix 65.4 12 0.00042 19.3 5.0 23 14-36 24-46 (74)
111 1z4h_A TORI, TOR inhibition pr 65.3 7.2 0.00025 20.6 3.1 24 16-39 10-33 (66)
112 2kzc_A Uncharacterized protein 64.8 5.6 0.00019 23.0 2.7 18 22-39 18-35 (85)
113 1qgp_A Protein (double strande 64.7 15 0.00052 20.1 4.9 43 3-45 16-63 (77)
114 2fi0_A Conserved domain protei 64.7 12 0.00039 20.8 4.0 31 15-45 48-78 (81)
115 1i1g_A Transcriptional regulat 64.5 17 0.00058 21.3 5.0 42 2-44 5-49 (141)
116 2pij_A Prophage PFL 6 CRO; tra 64.5 12 0.00042 19.0 4.7 37 18-54 15-54 (67)
117 3boq_A Transcriptional regulat 64.4 12 0.00041 22.1 4.3 40 5-44 51-93 (160)
118 3nau_A Zinc fingers and homeob 64.4 7 0.00024 21.5 2.9 22 19-40 34-55 (66)
119 3fx3_A Cyclic nucleotide-bindi 64.4 23 0.00079 22.1 6.2 50 2-52 154-216 (237)
120 2a61_A Transcriptional regulat 64.2 17 0.00059 20.9 5.0 39 5-44 37-78 (145)
121 3bpv_A Transcriptional regulat 63.9 18 0.0006 20.7 4.9 39 5-44 33-74 (138)
122 3kp7_A Transcriptional regulat 63.8 11 0.00036 22.2 4.0 38 5-44 42-82 (151)
123 1s3j_A YUSO protein; structura 63.4 15 0.00051 21.5 4.6 39 5-44 41-82 (155)
124 3d0s_A Transcriptional regulat 63.4 24 0.00081 21.8 6.1 37 16-52 177-216 (227)
125 3mml_B Allophanate hydrolase s 63.2 7.7 0.00026 26.1 3.5 33 13-45 110-142 (228)
126 3s2w_A Transcriptional regulat 63.1 16 0.00055 21.7 4.8 39 5-44 54-95 (159)
127 3bdd_A Regulatory protein MARR 63.0 19 0.00065 20.6 5.3 39 5-44 35-76 (142)
128 1q1h_A TFE, transcription fact 62.9 17 0.00057 20.5 4.6 42 3-44 20-64 (110)
129 1xmk_A Double-stranded RNA-spe 62.9 9.2 0.00031 21.5 3.3 42 2-44 12-57 (79)
130 4hbl_A Transcriptional regulat 62.5 15 0.00051 21.6 4.5 39 5-44 45-86 (149)
131 1smz_A Transportan in bicellar 62.4 0.29 9.8E-06 22.4 -2.5 14 41-54 1-14 (27)
132 3b02_A Transcriptional regulat 61.9 24 0.00082 21.4 6.3 51 2-52 112-178 (195)
133 2rdp_A Putative transcriptiona 61.8 20 0.00068 20.8 5.0 39 5-44 46-87 (150)
134 3ulq_B Transcriptional regulat 61.3 17 0.00057 20.4 4.3 23 14-36 42-64 (90)
135 4aik_A Transcriptional regulat 61.2 19 0.00065 21.6 4.9 40 5-44 35-77 (151)
136 1ft9_A Carbon monoxide oxidati 61.1 16 0.00054 22.7 4.6 33 17-49 164-199 (222)
137 1g4d_A Repressor protein C; pr 60.8 6.9 0.00024 21.5 2.5 28 17-44 5-34 (69)
138 3b73_A PHIH1 repressor-like pr 60.5 16 0.00056 21.6 4.3 43 2-45 14-61 (111)
139 2jsc_A Transcriptional regulat 60.2 15 0.00052 21.3 4.2 41 2-44 22-65 (118)
140 2fbi_A Probable transcriptiona 60.1 21 0.00071 20.4 4.8 39 5-44 40-81 (142)
141 1fad_A Protein (FADD protein); 59.5 14 0.00049 20.9 3.9 32 6-38 16-47 (99)
142 2ozu_A Histone acetyltransfera 59.5 18 0.00061 25.3 4.9 42 3-44 200-242 (284)
143 3f6v_A Possible transcriptiona 59.5 11 0.00036 23.3 3.5 41 2-44 59-102 (151)
144 2nyx_A Probable transcriptiona 59.4 19 0.00066 21.7 4.7 39 5-44 49-90 (168)
145 3nqo_A MARR-family transcripti 59.3 22 0.00074 22.1 5.0 40 5-44 45-88 (189)
146 3i4p_A Transcriptional regulat 59.0 17 0.00059 22.2 4.4 41 2-43 4-47 (162)
147 2ccq_A P97, peptide N-glycanas 58.9 7.7 0.00026 22.7 2.6 54 14-77 41-96 (99)
148 2qww_A Transcriptional regulat 58.5 22 0.00075 20.8 4.8 40 5-45 45-87 (154)
149 3e6c_C CPRK, cyclic nucleotide 58.2 32 0.0011 21.7 6.7 38 16-53 177-217 (250)
150 3kcc_A Catabolite gene activat 58.1 34 0.0012 21.9 6.8 36 16-51 217-255 (260)
151 2ovg_A Phage lambda CRO; trans 58.1 20 0.00067 19.2 4.3 37 18-54 15-54 (66)
152 2k9l_A RNA polymerase sigma fa 57.9 12 0.00042 20.5 3.2 27 11-37 43-69 (76)
153 2g7s_A Transcriptional regulat 57.9 12 0.00041 22.1 3.5 22 9-30 21-42 (194)
154 3eco_A MEPR; mutlidrug efflux 57.8 24 0.00082 20.2 4.8 40 5-44 35-78 (139)
155 3kw6_A 26S protease regulatory 57.8 20 0.00068 19.2 4.5 37 3-39 8-48 (78)
156 1uxc_A FRUR (1-57), fructose r 57.7 14 0.00047 19.7 3.3 23 17-39 1-23 (65)
157 2ww2_A Mannosidase, alpha-1,2- 57.6 13 0.00044 29.0 4.3 53 4-57 443-498 (737)
158 2ao9_A Phage protein; structur 57.4 26 0.00088 22.2 5.1 36 3-38 29-70 (155)
159 2ns0_A Hypothetical protein; r 57.4 12 0.00042 21.6 3.2 26 2-27 8-35 (85)
160 2nnn_A Probable transcriptiona 57.3 24 0.00083 20.0 4.9 39 5-44 42-83 (140)
161 1p4w_A RCSB; solution structur 57.3 24 0.00082 20.2 4.6 20 14-33 47-66 (99)
162 3bqz_B HTH-type transcriptiona 57.2 11 0.00037 22.4 3.2 22 9-30 15-36 (194)
163 1d5y_A ROB transcription facto 57.1 11 0.00039 24.6 3.6 41 4-44 6-48 (292)
164 3ppb_A Putative TETR family tr 56.9 11 0.00036 22.4 3.1 22 9-30 22-43 (195)
165 2phc_B Uncharacterized protein 56.9 11 0.00037 25.2 3.4 28 17-44 98-125 (225)
166 3t5x_A PCI domain-containing p 56.8 12 0.0004 24.3 3.5 27 13-39 138-170 (203)
167 1wj7_A Hypothetical protein (R 56.8 12 0.00041 22.4 3.2 44 4-47 25-71 (104)
168 2ib1_A Death domain containing 56.5 9.3 0.00032 21.9 2.7 34 3-38 5-40 (91)
169 2fu4_A Ferric uptake regulatio 56.2 21 0.00073 19.0 4.7 42 3-44 19-69 (83)
170 3e6m_A MARR family transcripti 55.6 24 0.00083 20.9 4.7 39 5-44 57-98 (161)
171 3tgn_A ADC operon repressor AD 55.5 25 0.00085 20.3 4.6 39 4-44 41-82 (146)
172 4a0z_A Transcription factor FA 55.4 25 0.00086 22.5 4.9 29 4-33 15-43 (190)
173 3te3_A Polycystic kidney disea 54.8 5.1 0.00018 19.9 1.1 17 65-81 5-21 (39)
174 3jst_A Putative pterin-4-alpha 54.8 15 0.00052 21.2 3.4 20 28-47 6-26 (97)
175 3vpr_A Transcriptional regulat 54.6 22 0.00075 21.2 4.4 28 3-30 5-37 (190)
176 1umq_A Photosynthetic apparatu 54.6 26 0.0009 19.6 4.4 24 18-41 56-79 (81)
177 3col_A Putative transcription 54.6 15 0.00051 21.7 3.5 22 9-30 23-44 (196)
178 1jgs_A Multiple antibiotic res 54.5 28 0.00095 19.8 5.0 39 5-44 38-79 (138)
179 3hsr_A HTH-type transcriptiona 54.4 14 0.00049 21.5 3.4 38 6-44 41-81 (140)
180 2jj7_A Hemolysin II regulatory 54.3 16 0.00056 21.6 3.7 22 9-30 20-41 (186)
181 3r0a_A Putative transcriptiona 54.1 30 0.001 20.1 5.1 42 3-44 28-73 (123)
182 3cwr_A Transcriptional regulat 53.8 15 0.00051 21.9 3.5 22 9-30 30-51 (208)
183 2hin_A GP39, repressor protein 53.7 16 0.00056 19.9 3.3 21 18-38 12-32 (71)
184 2qtq_A Transcriptional regulat 53.6 22 0.00077 21.2 4.3 22 9-30 29-50 (213)
185 4hku_A LMO2814 protein, TETR t 53.0 15 0.00051 22.0 3.4 28 3-30 9-41 (178)
186 3njc_A YSLB protein; NESG, PSI 52.8 7.5 0.00026 25.0 1.9 42 2-43 35-81 (158)
187 4b8x_A SCO5413, possible MARR- 52.7 28 0.00097 20.6 4.6 30 15-44 50-82 (147)
188 2jpc_A SSRB; DNA binding prote 52.7 12 0.0004 18.8 2.4 21 14-34 11-31 (61)
189 2dzl_A Protein FAM100B; UBA-li 52.6 13 0.00043 20.2 2.7 29 19-47 21-49 (66)
190 1xd7_A YWNA; structural genomi 52.5 35 0.0012 20.4 6.7 49 5-54 13-66 (145)
191 3on4_A Transcriptional regulat 52.3 17 0.00056 21.4 3.5 22 9-30 23-44 (191)
192 1sgm_A Putative HTH-type trans 52.1 16 0.00053 21.5 3.3 22 9-30 19-40 (191)
193 3cjn_A Transcriptional regulat 52.0 34 0.0012 20.1 4.9 39 5-44 56-97 (162)
194 1ntc_A Protein (nitrogen regul 52.0 24 0.00084 19.6 4.0 22 18-39 66-87 (91)
195 2d6y_A Putative TETR family re 51.9 24 0.00082 21.5 4.3 28 3-30 10-42 (202)
196 2dal_A Protein KIAA0794; FAS a 51.9 14 0.00047 19.6 2.7 29 19-47 19-47 (62)
197 2pex_A Transcriptional regulat 51.7 33 0.0011 19.9 5.2 39 5-44 51-92 (153)
198 2jrt_A Uncharacterized protein 51.5 33 0.0011 19.7 5.4 37 3-39 36-72 (95)
199 3bj6_A Transcriptional regulat 51.3 33 0.0011 19.8 5.2 39 5-44 44-85 (152)
200 3dew_A Transcriptional regulat 51.3 19 0.00064 21.4 3.6 28 3-30 10-42 (206)
201 1mkm_A ICLR transcriptional re 51.2 32 0.0011 22.4 5.0 41 5-45 12-55 (249)
202 1pb6_A Hypothetical transcript 51.2 16 0.00056 21.9 3.4 22 9-30 31-52 (212)
203 3kz9_A SMCR; transcriptional r 51.2 13 0.00044 22.1 2.9 22 9-30 30-51 (206)
204 2fq4_A Transcriptional regulat 51.1 17 0.00059 21.8 3.5 22 9-30 25-46 (192)
205 2elj_A Transcriptional adapter 50.7 32 0.0011 19.5 5.5 41 2-42 44-87 (88)
206 2dg7_A Putative transcriptiona 50.7 17 0.00058 21.7 3.4 34 3-36 9-47 (195)
207 2lnb_A Z-DNA-binding protein 1 50.6 33 0.0011 19.5 6.7 38 2-39 20-57 (80)
208 2elh_A CG11849-PA, LD40883P; s 50.5 29 0.001 18.9 4.7 35 2-39 27-61 (87)
209 2eh3_A Transcriptional regulat 50.5 21 0.00071 21.1 3.7 28 3-30 4-36 (179)
210 3clo_A Transcriptional regulat 50.4 32 0.0011 22.5 4.9 22 14-35 210-231 (258)
211 3jw4_A Transcriptional regulat 50.3 30 0.001 20.1 4.4 40 5-44 45-88 (148)
212 3lhq_A Acrab operon repressor 50.3 17 0.00058 21.8 3.3 22 9-30 27-48 (220)
213 3c2b_A Transcriptional regulat 50.3 26 0.00089 21.2 4.2 22 9-30 28-49 (221)
214 3frq_A Repressor protein MPHR( 50.2 21 0.0007 21.4 3.7 22 9-30 21-42 (195)
215 1lj9_A Transcriptional regulat 50.1 34 0.0012 19.6 5.1 39 5-44 33-74 (144)
216 1ify_A HHR23A, UV excision rep 50.0 16 0.00053 18.4 2.6 26 20-46 13-38 (49)
217 4fe7_A Xylose operon regulator 50.0 31 0.0011 23.8 5.0 36 5-40 309-345 (412)
218 3vlf_B 26S protease regulatory 49.9 31 0.0011 19.0 4.5 37 3-39 6-46 (88)
219 1pdn_C Protein (PRD paired); p 49.8 32 0.0011 19.2 5.0 35 2-39 22-56 (128)
220 1i3j_A I-TEVI, intron-associat 49.8 19 0.00064 21.8 3.3 27 17-43 84-110 (116)
221 4aci_A HTH-type transcriptiona 49.7 22 0.00075 21.0 3.7 22 9-30 27-48 (191)
222 2x4h_A Hypothetical protein SS 49.6 36 0.0012 19.6 4.9 33 13-45 28-63 (139)
223 1z05_A Transcriptional regulat 49.5 28 0.00096 24.5 4.7 42 3-45 41-85 (429)
224 3pas_A TETR family transcripti 49.1 15 0.00052 21.6 2.9 22 9-30 21-42 (195)
225 3vp5_A Transcriptional regulat 49.1 16 0.00055 22.1 3.1 22 9-30 25-46 (189)
226 3k0l_A Repressor protein; heli 49.1 33 0.0011 20.3 4.5 39 5-44 50-91 (162)
227 3f1b_A TETR-like transcription 49.0 18 0.0006 21.5 3.2 22 9-30 27-48 (203)
228 2zb9_A Putative transcriptiona 48.8 20 0.00067 21.8 3.5 22 9-30 36-57 (214)
229 2jml_A DNA binding domain/tran 48.7 18 0.00063 19.6 3.0 52 17-77 6-58 (81)
230 3c57_A Two component transcrip 48.7 33 0.0011 19.0 4.6 29 5-36 34-62 (95)
231 3lwj_A Putative TETR-family tr 48.6 19 0.00063 21.5 3.3 22 9-30 25-46 (202)
232 3e7q_A Transcriptional regulat 48.6 16 0.00054 21.9 3.0 22 9-30 27-48 (215)
233 2bgc_A PRFA; bacterial infecti 48.4 37 0.0013 21.3 4.9 28 16-43 169-200 (238)
234 1x2m_A LAG1 longevity assuranc 48.4 18 0.00063 19.4 2.9 34 7-40 12-52 (64)
235 3cdh_A Transcriptional regulat 48.3 32 0.0011 20.1 4.3 39 5-44 47-88 (155)
236 3boe_A Cadmium-specific carbon 48.3 12 0.00041 24.7 2.4 17 28-44 2-18 (210)
237 2yqf_A Ankyrin-1; death domain 48.2 34 0.0012 19.8 4.3 34 5-39 19-52 (111)
238 1z6r_A MLC protein; transcript 48.1 27 0.00094 24.2 4.5 42 3-45 18-62 (406)
239 2ebb_A Pterin-4-alpha-carbinol 48.0 19 0.00065 20.9 3.1 21 28-48 3-24 (101)
240 1pxv_A Cysteine protease; hydr 48.0 15 0.00051 24.1 2.8 37 8-45 55-91 (183)
241 2p5k_A Arginine repressor; DNA 47.9 26 0.00088 17.5 5.2 41 3-43 6-51 (64)
242 2g3q_A Protein YBL047C; endocy 47.8 11 0.00038 18.2 1.8 26 19-45 8-33 (43)
243 3on2_A Probable transcriptiona 47.8 18 0.00063 21.3 3.2 28 3-30 14-46 (199)
244 3g3z_A NMB1585, transcriptiona 47.7 38 0.0013 19.5 5.1 39 5-44 35-76 (145)
245 3bro_A Transcriptional regulat 47.7 37 0.0013 19.3 5.4 40 5-44 38-81 (141)
246 2iu5_A DHAS, YCEG, HTH-type dh 47.6 17 0.00057 21.9 3.0 22 9-30 26-47 (195)
247 3mvp_A TETR/ACRR transcription 47.6 21 0.0007 21.5 3.4 22 9-30 39-60 (217)
248 3knw_A Putative transcriptiona 47.6 20 0.00068 21.5 3.3 22 9-30 27-48 (212)
249 3cjd_A Transcriptional regulat 47.5 22 0.00074 21.6 3.5 22 9-30 25-46 (198)
250 3b81_A Transcriptional regulat 47.3 28 0.00096 20.6 4.0 22 9-30 24-45 (203)
251 1tns_A MU-transposase; DNA-bin 47.1 13 0.00045 20.8 2.2 28 17-44 5-34 (76)
252 2xrn_A HTH-type transcriptiona 47.0 32 0.0011 22.4 4.5 41 5-45 10-53 (241)
253 2frh_A SARA, staphylococcal ac 46.9 30 0.001 20.0 3.9 39 5-44 41-84 (127)
254 2l48_A N-acetylmuramoyl-L-alan 46.9 40 0.0014 19.4 5.4 42 29-77 31-76 (85)
255 2rae_A Transcriptional regulat 46.8 23 0.0008 21.2 3.6 25 9-33 30-54 (207)
256 1mw7_A Hypothetical protein HP 46.7 22 0.00075 24.1 3.6 45 32-81 184-228 (240)
257 3bja_A Transcriptional regulat 46.7 38 0.0013 19.1 5.0 39 5-44 37-78 (139)
258 1eto_A FIS, factor for inversi 46.6 40 0.0014 19.3 4.5 24 18-41 73-96 (98)
259 1vi0_A Transcriptional regulat 46.3 23 0.00079 21.6 3.5 28 3-30 10-42 (206)
260 1t33_A Putative transcriptiona 46.3 35 0.0012 20.7 4.3 21 9-30 25-45 (224)
261 2ras_A Transcriptional regulat 46.2 24 0.00082 21.3 3.6 22 9-30 24-45 (212)
262 3bhq_A Transcriptional regulat 46.1 30 0.001 21.0 4.0 22 9-30 25-46 (211)
263 3geu_A Intercellular adhesion 46.1 20 0.00068 21.2 3.1 22 9-30 16-37 (189)
264 1k61_A Mating-type protein alp 46.1 28 0.00095 17.6 3.3 21 19-39 31-51 (60)
265 1tbx_A ORF F-93, hypothetical 46.0 34 0.0012 18.7 4.0 39 5-44 12-57 (99)
266 2id3_A Putative transcriptiona 46.0 31 0.0011 21.3 4.2 22 9-30 53-74 (225)
267 2glo_A Brinker CG9653-PA; prot 46.0 29 0.00098 17.5 4.6 37 2-38 10-47 (59)
268 1uhs_A HOP, homeodomain only p 45.9 31 0.001 18.3 3.6 36 5-40 11-53 (72)
269 3u2r_A Regulatory protein MARR 45.9 29 0.001 20.7 3.9 40 5-44 50-93 (168)
270 3rd3_A Probable transcriptiona 45.7 31 0.0011 20.3 4.0 22 9-30 23-44 (197)
271 1on2_A Transcriptional regulat 45.7 43 0.0015 19.4 4.9 33 13-45 19-54 (142)
272 3qkx_A Uncharacterized HTH-typ 45.7 20 0.00067 21.0 3.0 22 9-30 21-42 (188)
273 3mnl_A KSTR, transcriptional r 45.7 19 0.00064 21.5 3.0 22 9-30 33-54 (203)
274 3bni_A Putative TETR-family tr 45.6 21 0.00073 22.2 3.3 22 9-30 56-77 (229)
275 3egq_A TETR family transcripti 45.3 13 0.00045 21.7 2.2 21 10-30 18-38 (170)
276 2da4_A Hypothetical protein DK 45.2 36 0.0012 18.4 4.0 36 5-40 18-63 (80)
277 3eup_A Transcriptional regulat 45.2 21 0.00071 21.2 3.1 22 9-30 24-45 (204)
278 2dg8_A Putative TETR-family tr 45.2 23 0.0008 21.2 3.4 22 9-30 22-43 (193)
279 3s5r_A Transcriptional regulat 45.1 21 0.00071 21.5 3.1 22 9-30 23-44 (216)
280 1zk8_A Transcriptional regulat 45.0 34 0.0011 20.1 4.1 22 9-30 21-42 (183)
281 4gif_A Polycystic kidney disea 45.0 8.9 0.0003 19.6 1.1 17 65-81 5-21 (45)
282 2vn2_A DNAD, chromosome replic 44.9 23 0.00077 21.0 3.2 28 17-44 52-82 (128)
283 3ccy_A Putative TETR-family tr 44.8 20 0.0007 21.6 3.1 28 3-30 16-48 (203)
284 2o7t_A Transcriptional regulat 44.8 21 0.0007 21.5 3.1 22 9-30 21-42 (199)
285 2hoe_A N-acetylglucosamine kin 44.8 10 0.00035 26.3 1.8 39 5-45 24-65 (380)
286 3him_A Probable transcriptiona 44.7 23 0.0008 21.0 3.3 22 9-30 29-50 (211)
287 2yve_A Transcriptional regulat 44.5 20 0.00068 21.5 3.0 22 9-30 17-38 (185)
288 2xi8_A Putative transcription 44.4 24 0.00082 17.3 2.9 24 15-38 13-36 (66)
289 2opt_A Actii protein; helical 44.3 33 0.0011 22.0 4.2 22 9-30 19-40 (234)
290 2eth_A Transcriptional regulat 44.3 46 0.0016 19.4 5.2 39 5-44 48-89 (154)
291 3ech_A MEXR, multidrug resista 44.3 39 0.0013 19.4 4.2 39 5-44 41-82 (142)
292 3anp_C Transcriptional repress 44.2 27 0.00091 21.0 3.5 22 9-30 22-43 (204)
293 2rnj_A Response regulator prot 44.1 37 0.0013 18.5 3.9 29 5-36 36-64 (91)
294 3f0c_A TETR-molecule A, transc 44.1 24 0.00083 21.2 3.3 22 9-30 24-45 (216)
295 1rkt_A Protein YFIR; transcrip 44.0 25 0.00086 21.3 3.4 22 9-30 25-46 (205)
296 3crj_A Transcription regulator 44.0 27 0.00092 21.2 3.6 28 3-30 16-48 (199)
297 3f3x_A Transcriptional regulat 44.0 45 0.0015 19.1 4.7 38 5-44 41-81 (144)
298 2rek_A Putative TETR-family tr 43.9 28 0.00097 20.8 3.6 21 9-30 29-49 (199)
299 3qbm_A TETR transcriptional re 43.9 34 0.0012 20.1 4.0 22 9-30 20-41 (199)
300 2pz9_A Putative regulatory pro 43.8 20 0.00068 22.2 2.9 22 9-30 43-64 (226)
301 3vib_A MTRR; helix-turn-helix 43.6 24 0.00082 21.4 3.3 28 3-30 12-44 (210)
302 3bru_A Regulatory protein, TET 43.5 21 0.00071 21.7 2.9 22 9-30 43-64 (222)
303 3nrv_A Putative transcriptiona 43.1 47 0.0016 19.1 5.0 39 5-44 44-85 (148)
304 3ezq_B Protein FADD; apoptosis 43.1 42 0.0014 20.1 4.2 23 17-39 18-40 (122)
305 3he0_A Transcriptional regulat 43.0 35 0.0012 20.1 3.9 22 9-30 24-45 (196)
306 1z91_A Organic hydroperoxide r 42.8 46 0.0016 19.0 4.4 39 5-44 44-85 (147)
307 3jsj_A Putative TETR-family tr 42.8 25 0.00086 20.8 3.2 27 3-30 11-42 (190)
308 1r69_A Repressor protein CI; g 42.8 26 0.00089 17.4 2.9 24 15-38 13-36 (69)
309 3npi_A TETR family regulatory 42.8 30 0.001 21.8 3.7 28 3-30 20-52 (251)
310 2ecc_A Homeobox and leucine zi 42.7 25 0.00086 19.5 2.9 21 19-39 33-53 (76)
311 2hzt_A Putative HTH-type trans 42.7 44 0.0015 18.8 4.8 40 3-44 16-59 (107)
312 2q24_A Putative TETR family tr 42.7 25 0.00086 21.0 3.2 21 9-30 28-48 (194)
313 3loc_A HTH-type transcriptiona 42.6 22 0.00077 21.2 3.0 28 3-30 20-52 (212)
314 3r4k_A Transcriptional regulat 42.6 15 0.00052 24.3 2.3 40 6-45 11-53 (260)
315 2ibd_A Possible transcriptiona 42.5 28 0.00094 21.0 3.4 22 9-30 27-48 (204)
316 1wi3_A DNA-binding protein SAT 42.2 26 0.00088 19.5 2.9 40 5-44 17-63 (71)
317 2ll0_A Uncharacterized protein 42.1 10 0.00036 22.7 1.3 18 22-39 37-54 (104)
318 2guh_A Putative TETR-family tr 42.0 33 0.0011 21.2 3.8 22 9-30 52-73 (214)
319 3omt_A Uncharacterized protein 42.0 28 0.00094 17.8 3.0 24 15-38 20-43 (73)
320 2w53_A Repressor, SMet; antibi 41.7 28 0.00097 21.2 3.4 28 3-30 13-45 (219)
321 2hyt_A TETR-family transcripti 41.7 27 0.00093 21.0 3.3 22 9-30 25-46 (197)
322 3a03_A T-cell leukemia homeobo 41.7 29 0.00098 17.5 2.9 22 19-40 27-48 (56)
323 3nnr_A Transcriptional regulat 41.6 29 0.00099 21.3 3.5 28 3-30 7-39 (228)
324 1r7j_A Conserved hypothetical 41.6 47 0.0016 18.7 5.6 41 5-48 12-55 (95)
325 3ljl_A Transcriptional regulat 41.5 25 0.00086 20.5 3.0 22 9-30 27-48 (156)
326 2cxi_A Phenylalanyl-tRNA synth 41.5 68 0.0023 22.5 5.7 31 16-46 284-316 (348)
327 3aqt_A Bacterial regulatory pr 41.2 28 0.00095 21.9 3.4 22 9-30 59-80 (245)
328 2g3b_A Putative TETR-family tr 41.2 32 0.0011 21.0 3.6 28 3-30 5-37 (208)
329 3t8r_A Staphylococcus aureus C 41.2 57 0.0019 19.6 7.4 50 5-54 15-72 (143)
330 3bqy_A Putative TETR family tr 41.1 29 0.00097 21.7 3.4 22 9-30 15-36 (209)
331 3dcf_A Transcriptional regulat 41.1 26 0.00088 21.0 3.1 22 9-30 44-65 (218)
332 3hta_A EBRA repressor; TETR fa 41.0 32 0.0011 21.2 3.6 22 9-30 41-62 (217)
333 1whz_A Hypothetical protein; a 40.8 23 0.00077 18.8 2.5 18 28-45 5-22 (70)
334 3dpj_A Transcription regulator 40.7 30 0.001 20.5 3.3 22 9-30 21-42 (194)
335 2wui_A MEXZ, transcriptional r 40.7 25 0.00086 21.4 3.0 28 3-30 13-45 (210)
336 1ru0_A DCOH-like protein dcohm 40.6 30 0.001 20.2 3.2 20 28-47 10-32 (105)
337 1bia_A BIRA bifunctional prote 40.5 48 0.0016 22.7 4.7 41 3-44 7-50 (321)
338 1z7u_A Hypothetical protein EF 40.4 50 0.0017 18.7 5.1 40 3-44 24-67 (112)
339 3cdl_A Transcriptional regulat 40.3 31 0.0011 20.8 3.4 22 9-30 22-43 (203)
340 1b0n_B Protein (SINI protein); 40.2 24 0.00082 18.7 2.5 19 21-39 20-38 (57)
341 2of7_A Putative TETR-family tr 40.2 28 0.00095 22.2 3.3 25 9-33 61-85 (260)
342 2qib_A TETR-family transcripti 40.2 25 0.00086 21.8 3.0 22 9-30 26-47 (231)
343 1k78_A Paired box protein PAX5 40.1 56 0.0019 19.2 5.0 35 2-39 37-71 (149)
344 2xdn_A HTH-type transcriptiona 40.0 30 0.001 20.9 3.3 22 9-30 24-45 (210)
345 1ui5_A A-factor receptor homol 39.9 36 0.0012 20.9 3.7 28 3-30 11-43 (215)
346 3hxa_A Pterin-4-alpha-carbinol 39.9 22 0.00074 20.8 2.5 20 28-47 8-30 (104)
347 2qko_A Possible transcriptiona 39.8 25 0.00085 21.4 2.9 32 9-40 41-82 (215)
348 3rh2_A Hypothetical TETR-like 39.8 37 0.0013 20.5 3.7 28 3-30 5-37 (212)
349 1zug_A Phage 434 CRO protein; 39.7 31 0.0011 17.2 2.9 24 15-38 15-38 (71)
350 2i10_A Putative TETR transcrip 39.7 36 0.0012 20.6 3.7 22 9-30 24-45 (202)
351 2r1j_L Repressor protein C2; p 39.6 33 0.0011 16.9 3.0 24 15-38 17-40 (68)
352 2gen_A Probable transcriptiona 39.5 35 0.0012 20.5 3.5 22 9-30 20-41 (197)
353 3gzi_A Transcriptional regulat 39.5 25 0.00085 21.2 2.8 22 9-30 30-51 (218)
354 3kkc_A TETR family transcripti 39.4 15 0.00051 21.5 1.7 21 10-30 26-46 (177)
355 2fd5_A Transcriptional regulat 39.4 35 0.0012 20.0 3.5 22 9-30 20-41 (180)
356 2xpw_A Tetracycline repressor 39.1 25 0.00086 22.0 2.9 22 9-30 16-37 (207)
357 2k9m_A RNA polymerase sigma fa 39.1 34 0.0012 20.7 3.4 37 11-48 34-70 (130)
358 2da1_A Alpha-fetoprotein enhan 39.0 42 0.0015 17.5 4.0 33 7-39 19-57 (70)
359 2fxa_A Protease production reg 38.9 59 0.002 20.5 4.7 39 5-44 52-93 (207)
360 2zcx_A SCO7815, TETR-family tr 38.7 31 0.001 21.7 3.3 22 9-30 36-57 (231)
361 2hyj_A Putative TETR-family tr 38.7 47 0.0016 20.0 4.1 28 3-30 14-46 (200)
362 2pg4_A Uncharacterized protein 38.6 48 0.0016 18.0 5.1 29 16-44 30-62 (95)
363 2cw1_A SN4M; lambda CRO fold, 38.5 42 0.0014 17.9 3.3 26 18-43 15-40 (65)
364 3q0w_A HTH-type transcriptiona 38.5 28 0.00097 21.6 3.1 22 9-30 57-78 (236)
365 2jn6_A Protein CGL2762, transp 38.4 50 0.0017 18.1 4.6 24 16-39 23-46 (97)
366 1ig7_A Homeotic protein MSX-1; 38.3 35 0.0012 17.1 2.9 21 19-39 30-50 (58)
367 3rkq_A Homeobox protein NKX-2. 38.3 35 0.0012 16.9 2.9 21 19-39 32-52 (58)
368 4f3q_A Transcriptional regulat 38.1 27 0.00094 23.7 3.1 44 33-81 186-229 (247)
369 3v6g_A Probable transcriptiona 38.0 32 0.0011 21.2 3.3 28 3-30 16-48 (208)
370 2nx4_A Transcriptional regulat 38.0 34 0.0012 20.5 3.3 28 3-30 12-44 (194)
371 2dak_A Ubiquitin carboxyl-term 37.9 33 0.0011 18.0 2.9 32 19-51 13-44 (63)
372 2f07_A YVDT; helix-turn-helix, 37.9 38 0.0013 20.3 3.5 22 9-30 23-44 (197)
373 1akh_A Protein (mating-type pr 37.7 34 0.0012 17.3 2.8 21 19-39 35-55 (61)
374 3k2z_A LEXA repressor; winged 37.7 53 0.0018 20.5 4.3 42 3-44 7-55 (196)
375 2xvc_A ESCRT-III, SSO0910; cel 37.6 49 0.0017 17.7 4.7 35 4-38 13-47 (59)
376 2np5_A Transcriptional regulat 37.6 37 0.0013 20.5 3.5 28 3-30 11-43 (203)
377 2oi8_A Putative regulatory pro 37.6 47 0.0016 20.6 4.0 22 9-30 29-50 (216)
378 3a02_A Homeobox protein arista 37.5 35 0.0012 17.3 2.8 22 19-40 29-50 (60)
379 2dam_A ETEA protein; KIAA0887, 37.4 26 0.00089 18.9 2.4 29 19-47 22-51 (67)
380 3qqa_A CMER; alpha-helical, he 37.4 30 0.001 20.7 3.0 22 9-30 32-53 (216)
381 2wte_A CSA3; antiviral protein 37.2 79 0.0027 20.9 5.2 41 4-45 155-198 (244)
382 2lc0_A Putative uncharacterize 37.1 47 0.0016 20.2 3.8 37 16-52 65-108 (132)
383 2d5u_A N-glycanase 1; pngase, 37.0 24 0.00082 21.4 2.4 54 14-76 56-110 (124)
384 3bjb_A Probable transcriptiona 37.0 32 0.0011 21.0 3.1 22 9-30 35-56 (207)
385 2hdd_A Protein (engrailed home 37.0 37 0.0012 17.3 2.9 21 19-39 33-53 (61)
386 2id6_A Transcriptional regulat 37.0 34 0.0012 20.6 3.2 22 9-30 18-39 (202)
387 3bs3_A Putative DNA-binding pr 36.9 39 0.0013 17.1 3.0 24 15-38 22-45 (76)
388 1z0x_A Transcriptional regulat 36.9 32 0.0011 21.5 3.2 22 9-30 18-40 (220)
389 3guv_A Site-specific recombina 36.8 14 0.00046 22.7 1.3 33 13-45 9-43 (167)
390 3nrg_A TETR family transcripti 36.8 32 0.0011 20.6 3.0 22 9-30 26-47 (217)
391 2e19_A Transcription factor 8; 36.7 37 0.0013 17.8 2.9 35 6-40 14-54 (64)
392 3tqn_A Transcriptional regulat 36.5 60 0.0021 18.5 4.2 31 15-45 31-65 (113)
393 1jgg_A Segmentation protein EV 36.5 37 0.0013 17.2 2.8 21 19-39 31-51 (60)
394 3kz3_A Repressor protein CI; f 36.3 38 0.0013 17.7 3.0 24 15-38 24-47 (80)
395 1msk_A Cobalamin-dependent met 36.3 8.6 0.00029 27.3 0.3 29 22-50 290-321 (331)
396 1du6_A PBX1, homeobox protein 36.1 37 0.0013 17.4 2.8 22 19-40 36-57 (64)
397 2v79_A DNA replication protein 36.1 40 0.0014 20.4 3.3 31 13-43 48-81 (135)
398 3kzf_A Carbamate kinase; argin 35.9 9.5 0.00032 26.9 0.5 20 28-47 138-158 (317)
399 3c0t_B Mediator of RNA polymer 35.9 18 0.00062 16.8 1.3 11 69-79 7-17 (33)
400 2b5a_A C.BCLI; helix-turn-heli 35.8 36 0.0012 17.3 2.8 24 15-38 22-45 (77)
401 1y7y_A C.AHDI; helix-turn-heli 35.5 40 0.0014 16.9 3.0 24 15-38 25-48 (74)
402 2o2k_A Methionine synthase; C- 35.5 9 0.00031 27.5 0.3 33 22-54 301-336 (355)
403 2o0y_A Transcriptional regulat 35.2 27 0.00093 23.0 2.7 40 6-45 28-70 (260)
404 3g7r_A Putative transcriptiona 35.2 39 0.0013 20.7 3.3 22 9-30 48-69 (221)
405 4fx0_A Probable transcriptiona 34.9 46 0.0016 19.7 3.5 29 15-43 51-82 (148)
406 2ia2_A Putative transcriptiona 34.7 45 0.0016 22.0 3.7 45 6-50 26-73 (265)
407 2gfn_A HTH-type transcriptiona 34.7 47 0.0016 20.2 3.6 28 3-30 11-43 (209)
408 2p4w_A Transcriptional regulat 34.7 75 0.0026 20.3 4.7 41 2-44 16-59 (202)
409 3qq6_A HTH-type transcriptiona 34.6 38 0.0013 17.8 2.8 24 15-38 22-45 (78)
410 3b7h_A Prophage LP1 protein 11 34.6 37 0.0013 17.3 2.7 24 15-38 19-42 (78)
411 2bv6_A MGRA, HTH-type transcri 34.6 65 0.0022 18.3 5.1 39 5-44 41-82 (142)
412 1b7y_B Phers, protein (phenyla 34.5 1.3E+02 0.0044 23.5 6.7 32 16-47 405-438 (785)
413 1wcn_A Transcription elongatio 34.3 22 0.00074 19.3 1.7 26 18-43 38-66 (70)
414 2ecb_A Zinc fingers and homeob 34.1 40 0.0014 19.1 2.9 26 19-44 41-68 (89)
415 3fiw_A Putative TETR-family tr 34.0 42 0.0015 20.9 3.4 32 9-40 38-79 (211)
416 2lfc_A Fumarate reductase, fla 33.9 40 0.0014 20.6 3.2 21 17-37 96-116 (160)
417 2es9_A Putative cytoplasmic pr 33.8 30 0.001 20.5 2.4 19 26-44 48-68 (115)
418 1puf_B PRE-B-cell leukemia tra 33.8 55 0.0019 17.2 3.5 21 19-39 34-54 (73)
419 2zcm_A Biofilm operon icaabcd 33.8 48 0.0017 19.6 3.5 22 9-30 20-41 (192)
420 2wiu_B HTH-type transcriptiona 33.7 47 0.0016 17.4 3.1 22 15-36 24-45 (88)
421 2b0l_A GTP-sensing transcripti 33.7 22 0.00075 20.4 1.8 30 15-44 41-74 (102)
422 2vi6_A Homeobox protein nanog; 33.7 44 0.0015 17.0 2.9 22 19-40 33-54 (62)
423 2k27_A Paired box protein PAX- 33.5 58 0.002 19.4 3.8 35 2-39 30-64 (159)
424 2qwt_A Transcriptional regulat 33.5 38 0.0013 20.3 3.0 21 9-30 26-46 (196)
425 2g7l_A TETR-family transcripti 33.5 56 0.0019 21.0 4.0 32 9-40 32-73 (243)
426 2h1k_A IPF-1, pancreatic and d 33.3 45 0.0015 17.1 2.9 22 19-40 33-54 (63)
427 2cra_A Homeobox protein HOX-B1 33.3 45 0.0015 17.5 2.9 22 19-40 37-58 (70)
428 1okr_A MECI, methicillin resis 33.3 66 0.0023 18.0 4.1 40 4-44 13-59 (123)
429 2j0p_A HEMS, hemin transport p 33.2 80 0.0027 22.4 4.9 38 3-41 6-43 (345)
430 1le8_B Mating-type protein alp 33.1 55 0.0019 17.8 3.4 22 19-40 35-56 (83)
431 2oer_A Probable transcriptiona 33.0 35 0.0012 20.8 2.8 28 3-30 26-58 (214)
432 2of5_H Leucine-rich repeat and 32.9 76 0.0026 18.6 4.5 32 6-38 15-46 (118)
433 1wi9_A Protein C20ORF116 homol 32.9 66 0.0022 17.8 5.2 45 13-57 18-68 (72)
434 2ef8_A C.ECOT38IS, putative tr 32.8 43 0.0015 17.3 2.8 24 15-38 22-45 (84)
435 2djn_A Homeobox protein DLX-5; 32.8 43 0.0015 17.5 2.8 35 6-40 18-58 (70)
436 2o71_A Death domain-containing 32.7 46 0.0016 19.7 3.2 22 17-38 36-57 (115)
437 1vg5_A RSGI RUH-014, rhomboid 32.7 25 0.00086 19.4 1.8 27 20-47 34-60 (73)
438 2g7u_A Transcriptional regulat 32.6 56 0.0019 21.3 3.9 43 6-48 19-64 (257)
439 3kkd_A Transcriptional regulat 32.6 46 0.0016 20.5 3.4 28 3-30 37-69 (237)
440 1wgr_A Growth factor receptor- 32.5 25 0.00087 20.6 1.9 21 40-60 77-97 (100)
441 1r8d_A Transcription activator 32.4 51 0.0018 18.8 3.3 25 17-42 3-27 (109)
442 1o5l_A Transcriptional regulat 32.3 9.5 0.00032 23.7 0.0 28 16-43 164-194 (213)
443 3pco_B Phenylalanyl-tRNA synth 32.3 1.1E+02 0.0036 24.1 5.8 31 16-46 407-439 (795)
444 1kon_A Protein YEBC, YEBC; alp 32.3 29 0.001 23.6 2.5 44 32-80 184-227 (249)
445 2vz4_A Tipal, HTH-type transcr 32.3 56 0.0019 18.6 3.5 23 17-39 2-24 (108)
446 2k9q_A Uncharacterized protein 32.2 46 0.0016 17.2 2.9 23 15-37 14-36 (77)
447 1wxp_A THO complex subunit 1; 32.2 57 0.0019 18.8 3.5 21 17-37 30-50 (110)
448 2cqx_A LAG1 longevity assuranc 32.2 47 0.0016 17.8 2.9 22 19-40 39-60 (72)
449 2a6c_A Helix-turn-helix motif; 32.1 56 0.0019 17.3 3.3 25 14-38 29-53 (83)
450 3g1o_A Transcriptional regulat 32.0 28 0.00095 21.9 2.2 22 9-30 56-77 (255)
451 2gf5_A FADD protein; death dom 31.9 81 0.0028 19.9 4.5 34 5-39 99-132 (191)
452 2rn7_A IS629 ORFA; helix, all 31.9 69 0.0024 17.8 4.8 38 2-39 11-53 (108)
453 3lwf_A LIN1550 protein, putati 31.8 92 0.0032 19.2 8.2 52 5-56 31-90 (159)
454 2dmu_A Homeobox protein goosec 31.6 49 0.0017 17.3 2.9 22 19-40 37-58 (70)
455 3hrs_A Metalloregulator SCAR; 31.6 41 0.0014 21.6 3.0 33 13-45 17-52 (214)
456 2k40_A Homeobox expressed in E 31.5 49 0.0017 17.1 2.9 34 7-40 13-52 (67)
457 1bw5_A ISL-1HD, insulin gene e 31.4 49 0.0017 17.0 2.8 22 19-40 33-54 (66)
458 2da2_A Alpha-fetoprotein enhan 31.3 49 0.0017 17.2 2.9 22 19-40 37-58 (70)
459 2e1o_A Homeobox protein PRH; D 31.3 50 0.0017 17.3 2.9 22 19-40 37-58 (70)
460 1zq3_P PRD-4, homeotic bicoid 31.3 49 0.0017 17.2 2.8 33 7-39 14-52 (68)
461 2da5_A Zinc fingers and homeob 31.2 50 0.0017 17.6 2.9 22 19-40 37-58 (75)
462 2vpr_A Tetracycline resistance 31.1 57 0.002 20.3 3.6 22 9-30 17-38 (207)
463 3k69_A Putative transcription 31.0 94 0.0032 19.1 5.4 40 5-44 16-59 (162)
464 2qlz_A Transcription factor PF 30.9 23 0.0008 23.5 1.8 42 2-45 13-57 (232)
465 2xsg_A Ccman5; hydrolase, mann 30.9 23 0.0008 27.9 2.0 50 6-56 455-517 (774)
466 1ftt_A TTF-1 HD, thyroid trans 30.9 50 0.0017 17.2 2.8 22 19-40 32-53 (68)
467 2ek5_A Predicted transcription 30.9 73 0.0025 18.8 3.9 31 15-45 26-60 (129)
468 3i9v_2 NADH-quinone oxidoreduc 30.9 71 0.0024 20.3 4.0 33 6-38 30-65 (181)
469 3c07_A Putative TETR-family tr 30.9 43 0.0015 21.7 3.1 22 9-30 54-75 (273)
470 2ict_A Antitoxin HIGA; helix-t 30.8 62 0.0021 17.3 3.4 24 15-38 20-43 (94)
471 2kpj_A SOS-response transcript 30.7 54 0.0018 17.7 3.1 22 15-36 21-42 (94)
472 2dn0_A Zinc fingers and homeob 30.7 51 0.0017 17.6 2.9 25 19-43 38-64 (76)
473 3oep_A Putative uncharacterize 30.6 50 0.0017 24.6 3.6 32 14-45 84-115 (494)
474 2of5_A Death domain-containing 30.6 47 0.0016 19.6 3.0 22 17-38 36-57 (114)
475 3ni7_A Bacterial regulatory pr 30.4 43 0.0015 20.8 2.9 22 9-30 20-41 (213)
476 2hi3_A Homeodomain-only protei 30.4 50 0.0017 17.4 2.8 35 6-40 13-54 (73)
477 3kp1_E D-ornithine aminomutase 30.3 61 0.0021 19.8 3.4 25 9-33 39-64 (121)
478 2p7v_B Sigma-70, RNA polymeras 30.3 59 0.002 16.5 5.0 23 15-37 24-46 (68)
479 2dmt_A Homeobox protein BARH-l 30.3 52 0.0018 17.7 2.9 22 19-40 47-68 (80)
480 1mnm_C Protein (MAT alpha-2 tr 30.2 65 0.0022 17.6 3.4 21 19-39 60-80 (87)
481 2da3_A Alpha-fetoprotein enhan 30.0 51 0.0017 17.6 2.8 21 19-39 47-67 (80)
482 3k32_A Uncharacterized protein 30.0 27 0.00093 22.1 1.9 27 23-49 136-163 (203)
483 3f6w_A XRE-family like protein 29.9 49 0.0017 17.2 2.8 24 15-38 26-49 (83)
484 3s8q_A R-M controller protein; 29.9 51 0.0017 17.1 2.8 24 15-38 23-46 (82)
485 2l8n_A Transcriptional repress 29.4 34 0.0012 18.1 2.0 19 15-33 8-26 (67)
486 1x3u_A Transcriptional regulat 29.4 64 0.0022 16.6 4.7 23 14-36 29-51 (79)
487 2dt5_A AT-rich DNA-binding pro 29.3 74 0.0025 20.6 4.0 32 9-40 21-52 (211)
488 1u78_A TC3 transposase, transp 29.2 83 0.0028 17.8 4.9 30 13-42 74-105 (141)
489 2v6u_A Pterin-4A-carbinolamine 29.2 22 0.00076 20.7 1.3 20 28-47 9-29 (104)
490 2hxo_A Putative TETR-family tr 29.1 51 0.0017 21.0 3.2 22 9-30 29-50 (237)
491 1ahd_P Antennapedia protein mu 28.9 58 0.002 17.0 2.9 22 19-40 32-53 (68)
492 4b4t_M 26S protease regulatory 28.8 1E+02 0.0035 22.3 5.0 37 3-39 357-397 (434)
493 2wus_R RODZ, putative uncharac 28.8 39 0.0013 19.6 2.4 20 19-38 58-77 (112)
494 2l9r_A Homeobox protein NKX-3. 28.7 59 0.002 17.4 2.9 22 19-40 34-55 (69)
495 1lfp_A Hypothetical protein AQ 28.6 50 0.0017 22.4 3.1 46 32-81 182-227 (249)
496 1jmx_G Amine dehydrogenase; ox 28.6 13 0.00046 21.0 0.2 12 39-50 12-23 (79)
497 2f2e_A PA1607; transcription f 28.5 97 0.0033 18.5 4.7 39 4-44 27-68 (146)
498 2vt3_A REX, redox-sensing tran 28.5 80 0.0028 20.5 4.1 34 9-42 26-59 (215)
499 1x57_A Endothelial differentia 28.5 67 0.0023 17.1 3.2 22 15-36 25-46 (91)
500 1yz8_P Pituitary homeobox 2; D 28.5 47 0.0016 17.2 2.5 34 7-40 15-54 (68)
No 1
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=99.69 E-value=2e-17 Score=113.22 Aligned_cols=80 Identities=18% Similarity=0.305 Sum_probs=64.4
Q ss_pred ChHHHHHHHHHHhcccccHHHHHHHhC-CCHHHHHHHHHhcCCeEeCCCceEeecCCCCcccCCC--ChhHHHHHHhHH-
Q 036949 1 LYTKRMFQLLMSAYSTISTQDTALFLG-MNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKL--DPSKMQCLTEYV- 76 (81)
Q Consensus 1 ~~R~~~~~li~~AY~sIs~~~~a~~Lg-ls~~e~~~~~~~~GW~~d~~~~~~~p~~~~~~~~~~~--~~~~l~~Lt~~v- 76 (81)
++|.+|+.|+++||++|+++.+++||| ++++++.+|++++||++|++|.+ +|.++++..++.. +...++.++.++
T Consensus 137 sIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~GW~vd~~g~I-~~~n~e~~~k~~~~~E~i~~~~~~~~~~ 215 (226)
T 1rz4_A 137 SVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESGQI-FICSQEESIKPKNIVEKIDFDSVSSIMA 215 (226)
T ss_dssp HHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHHTCEECC--CE-ECCCHHHHTSCCCSSCCCCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHCCCEECCCccE-EeCCCcccccceeeeecccHHHHHHHHH
Confidence 379999999999999999999999996 69999999999999999878776 6666666666555 999999999998
Q ss_pred -HhhcC
Q 036949 77 -FHLEH 81 (81)
Q Consensus 77 -~~LE~ 81 (81)
++|||
T Consensus 216 ~~~~~~ 221 (226)
T 1rz4_A 216 SSQLEH 221 (226)
T ss_dssp C-----
T ss_pred HHHHhh
Confidence 56664
No 2
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=99.44 E-value=1.4e-13 Score=93.71 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=49.2
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCC-CHHHHHHHHHhcCCeEeCCCceEeec
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGM-NEDDAAYYVQQQGWTLDPASRMLTVK 54 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgl-s~~e~~~~~~~~GW~~d~~~~~~~p~ 54 (81)
+|.+++.||++||.+|++++++.+||| |++|+.+|++++||+++ ||.++||+
T Consensus 176 vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~-dg~i~F~~ 228 (229)
T 4b0z_A 176 VRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIR-DGVIYFPK 228 (229)
T ss_dssp HHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEE-TTEEECC-
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEe-CCEEecCC
Confidence 799999999999999999999999999 89999999999999998 88899886
No 3
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.32 E-value=1.7e-12 Score=90.70 Aligned_cols=55 Identities=11% Similarity=0.239 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCC-CHHHHHHHHHhcCCeEeCCCceEeecCCC
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGM-NEDDAAYYVQQQGWTLDPASRMLTVKKQP 57 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgl-s~~e~~~~~~~~GW~~d~~~~~~~p~~~~ 57 (81)
+|.+++.||++||.+|+++.++++||| |++|+.+|++++||+++ +|.++||....
T Consensus 185 iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~~gW~~~-~~~v~F~~~~~ 240 (274)
T 4b4t_T 185 IRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIV-NSKVYFNNQSK 240 (274)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHHTTCCCC-SSCCCC-----
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHHcCCEEe-CCEeEECCccc
Confidence 799999999999999999999999999 89999999999999998 45666766543
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=98.18 E-value=3.4e-06 Score=59.91 Aligned_cols=47 Identities=9% Similarity=-0.004 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHhcc----cccHHHHHHHhCC-CHHHHHHHHHhcCCeEeCCC
Q 036949 2 YTKRMFQLLMSAYS----TISTQDTALFLGM-NEDDAAYYVQQQGWTLDPAS 48 (81)
Q Consensus 2 ~R~~~~~li~~AY~----sIs~~~~a~~Lgl-s~~e~~~~~~~~GW~~d~~~ 48 (81)
+|.+++.+|.+||. .++++.++.+||| +.+|+.+||...||+++.++
T Consensus 206 vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~~~gl~~~~~~ 257 (316)
T 3t5v_A 206 IRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIEIINGD 257 (316)
T ss_dssp HHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHHHTTCCEETTT
T ss_pred HHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHHHCCCeEeCCC
Confidence 79999999999995 8999999999999 79999999999999998644
No 5
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=97.50 E-value=0.00018 Score=42.04 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHhc------CCeEeCCCceEeec
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQ------GWTLDPASRMLTVK 54 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~~------GW~~d~~~~~~~p~ 54 (81)
+.+.-++.+++-|++|+++.+|.+||++++++..++.+. -=++|.-..++...
T Consensus 16 v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~ 74 (84)
T 1ufm_A 16 VIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE 74 (84)
T ss_dssp HHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEEC
T ss_pred HHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeC
Confidence 456667789999999999999999999999988775542 22566644454443
No 6
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.82 E-value=0.0032 Score=45.71 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh-------cCCeEeCCCceEeecCCCCcccCCC-ChhHHHHHH
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ-------QGWTLDPASRMLTVKKQPLVTEQKL-DPSKMQCLT 73 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~-------~GW~~d~~~~~~~p~~~~~~~~~~~-~~~~l~~Lt 73 (81)
+|.+.+.-+.+.|++|+++++|..||++++++...+.+ .| ++|...+++.-..++.....-. ..+.++.++
T Consensus 302 Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a-~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls 380 (394)
T 3txn_A 302 MLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSG-ILDQGEGVLIVFEETPVDKTYERVLETIQSMG 380 (394)
T ss_dssp HHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCE-EEETTTTEEEECCC------------------
T ss_pred HHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeE-EEcCCCCEEEECCCcchhhHHHHHHHHHHHHH
Confidence 57777888899999999999999999999988777543 24 7888666666554432221111 455666666
Q ss_pred hHHH
Q 036949 74 EYVF 77 (81)
Q Consensus 74 ~~v~ 77 (81)
..|-
T Consensus 381 ~vVd 384 (394)
T 3txn_A 381 KVVD 384 (394)
T ss_dssp ----
T ss_pred HHHH
Confidence 6663
No 7
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.01 Score=43.14 Aligned_cols=52 Identities=15% Similarity=0.226 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh-----c--CCeEeC-CCceEeec
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ-----Q--GWTLDP-ASRMLTVK 54 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~-----~--GW~~d~-~~~~~~p~ 54 (81)
+++.-+.-+++-|++|+++++|..||++++++..++.+ + | ++|. +|.+.|-.
T Consensus 345 v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~a-kIDq~~giV~F~~ 404 (445)
T 4b4t_P 345 VIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYA-KVNRPAKIVNFEK 404 (445)
T ss_dssp HHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCC-EEETTTTEEEC--
T ss_pred HHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEE-EEcCCCCEEEECC
Confidence 45666778999999999999999999999999888653 2 4 5665 45444433
No 8
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.012 Score=42.45 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh-----c-CCeEeCCCceEeecCCCCc
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ-----Q-GWTLDPASRMLTVKKQPLV 59 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~-----~-GW~~d~~~~~~~p~~~~~~ 59 (81)
+|.+.+.-+.+.|++|+++.+|..||+|++++.+.+.+ + .=++|.-.+++.-..|+..
T Consensus 333 ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~ 396 (429)
T 4b4t_R 333 MRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNK 396 (429)
T ss_dssp HHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC----
T ss_pred HHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCch
Confidence 78999999999999999999999999999887665432 2 4467876677766655443
No 9
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.041 Score=37.55 Aligned_cols=75 Identities=8% Similarity=0.051 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHhc------CCeEeCC-CceEeecCCCCcccCCC-ChhHHHHHH
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQ------GWTLDPA-SRMLTVKKQPLVTEQKL-DPSKMQCLT 73 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~~------GW~~d~~-~~~~~p~~~~~~~~~~~-~~~~l~~Lt 73 (81)
+|...+.-+.+.|++|+++++|..||++++++...+.+. -=++|.. |.+.+-.++.... .-. .-+.+++|+
T Consensus 342 ~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~-~~~~~l~~~~~l~ 420 (434)
T 4b4t_Q 342 LLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDA-TYDSALELVGQLN 420 (434)
T ss_dssp HHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC---------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcchhH-HHHHHHHHHHHHH
Confidence 466777889999999999999999999999887765431 1234543 3333322222211 111 445566677
Q ss_pred hHHH
Q 036949 74 EYVF 77 (81)
Q Consensus 74 ~~v~ 77 (81)
++|.
T Consensus 421 ~~vd 424 (434)
T 4b4t_Q 421 KVVD 424 (434)
T ss_dssp ----
T ss_pred HHHH
Confidence 6664
No 10
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=95.08 E-value=0.12 Score=28.12 Aligned_cols=43 Identities=5% Similarity=0.026 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.|++|+.++...=..++..++|..||+|...+...+. +.|+..
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 4788999998754569999999999999888766655 468854
No 11
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=93.78 E-value=0.14 Score=28.58 Aligned_cols=39 Identities=10% Similarity=0.384 Sum_probs=31.3
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHh---cCCeEeCCCceEeec
Q 036949 16 TISTQDTALFLGMNEDDAAYYVQQ---QGWTLDPASRMLTVK 54 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~~~~~---~GW~~d~~~~~~~p~ 54 (81)
.++++++|.|||++.+-+.+++.+ ..|.+--++.+.+++
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~~~~~~~~~~iG~~~lI~r 57 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEENKNANWLIMNGNRIQIKR 57 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHHCTTCSSEEEETTEEEEES
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHcCCCCCcEEEeCCEEEEEH
Confidence 467899999999999999999987 378764456666665
No 12
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=92.51 E-value=0.28 Score=27.14 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~ 44 (81)
+|++|+.++... ..++..++|..||+|..-+.... .+.|+-.
T Consensus 1 ~r~~Il~~L~~~-~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 1 MKNEILEFLNRH-NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp CHHHHHHHHHHS-CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred CHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 478899998764 67999999999999987765554 4569876
No 13
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=91.71 E-value=0.13 Score=31.25 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=17.2
Q ss_pred hCC-CHHHHHHHHHhcCCeEe
Q 036949 26 LGM-NEDDAAYYVQQQGWTLD 45 (81)
Q Consensus 26 Lgl-s~~e~~~~~~~~GW~~d 45 (81)
|.| |.+++++||++.||.+.
T Consensus 64 L~F~skE~AiayAek~G~~y~ 84 (108)
T 2lju_A 64 LSFTTRELAIAYAVAHKIDYT 84 (108)
T ss_dssp EEESSHHHHHHHHHHTTCEEE
T ss_pred EecCCHHHHHHHHHHcCCEEE
Confidence 344 89999999999999983
No 14
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=89.85 E-value=0.65 Score=26.47 Aligned_cols=42 Identities=7% Similarity=0.136 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhcc--cccHHHHHHHhCCCHHHHHHHHHhc-CCe
Q 036949 2 YTKRMFQLLMSAYS--TISTQDTALFLGMNEDDAAYYVQQQ-GWT 43 (81)
Q Consensus 2 ~R~~~~~li~~AY~--sIs~~~~a~~Lgls~~e~~~~~~~~-GW~ 43 (81)
+-+++...|..-|. .++++++|..+|+|+..+.....+. |=+
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s 47 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIP 47 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 34678888999986 6999999999999999887777655 544
No 15
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=89.75 E-value=0.14 Score=31.09 Aligned_cols=20 Identities=25% Similarity=0.476 Sum_probs=17.2
Q ss_pred hCC-CHHHHHHHHHhcCCeEe
Q 036949 26 LGM-NEDDAAYYVQQQGWTLD 45 (81)
Q Consensus 26 Lgl-s~~e~~~~~~~~GW~~d 45 (81)
|.| |.+++++||++.||.+.
T Consensus 56 L~F~skE~AiayAek~G~~y~ 76 (106)
T 2jya_A 56 LTFETQEQAEAYAQRKGIEYR 76 (106)
T ss_dssp EEESSHHHHHHHHHHHTCEEE
T ss_pred EecCCHHHHHHHHHHcCCEEE
Confidence 444 89999999999999984
No 16
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=89.33 E-value=0.99 Score=25.41 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHh------cccccHHHHHHHhCCCHHHHHHHHH---hcCCe
Q 036949 2 YTKRMFQLLMSA------YSTISTQDTALFLGMNEDDAAYYVQ---QQGWT 43 (81)
Q Consensus 2 ~R~~~~~li~~A------Y~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~ 43 (81)
.+++|+++|... | .+++.++|..||+|..-+..... ++|.-
T Consensus 5 r~~~IL~~I~~~i~~~~g~-~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I 54 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGA-PVKTRDIADAAGLSIYQVRLYLEQLHDVGVL 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTS-CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHhhccCC-CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 467888888877 5 49999999999999876655543 45665
No 17
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=89.29 E-value=0.83 Score=26.23 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcc--cccHHHHHHHhCCCHHHHHHHHHhc-CCe
Q 036949 4 KRMFQLLMSAYS--TISTQDTALFLGMNEDDAAYYVQQQ-GWT 43 (81)
Q Consensus 4 ~~~~~li~~AY~--sIs~~~~a~~Lgls~~e~~~~~~~~-GW~ 43 (81)
.++.+.|..-|. .++++++|..+|+|...+.....+. |=+
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s 48 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGIS 48 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcC
Confidence 467788888885 8999999999999999888777754 644
No 18
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.47 E-value=0.054 Score=40.82 Aligned_cols=36 Identities=28% Similarity=0.443 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCC-CHHHHHHHHH
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGM-NEDDAAYYVQ 38 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgl-s~~e~~~~~~ 38 (81)
.+.-++-|+++|++||+.++|..||+ |++++.-++.
T Consensus 388 ir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVA 424 (523)
T 4b4t_S 388 IKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVS 424 (523)
T ss_dssp HHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHH
Confidence 44567788999999999999999999 4555655444
No 19
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=87.79 E-value=0.43 Score=23.84 Aligned_cols=27 Identities=7% Similarity=0.003 Sum_probs=23.8
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHhcCC
Q 036949 16 TISTQDTALFLGMNEDDAAYYVQQQGW 42 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~~~~~~GW 42 (81)
.+.+.++|.-||++.+++.++..+.|=
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADAGI 28 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHHTS
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHcCC
Confidence 467889999999999999999998773
No 20
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=87.24 E-value=1.4 Score=25.18 Aligned_cols=37 Identities=8% Similarity=0.202 Sum_probs=29.6
Q ss_pred HHHHHHHHHhc-ccccHHHHHHHhCCCHHHHHHHHHhc
Q 036949 4 KRMFQLLMSAY-STISTQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 4 ~~~~~li~~AY-~sIs~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
+++...|..-| ..++++++|..+|+|+..+.....+.
T Consensus 5 ~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 5 RQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 45667777776 56999999999999999887777654
No 21
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=87.16 E-value=0.11 Score=26.81 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=24.6
Q ss_pred HHHHHHHhCCC-HHHHHHHHHhcCCeEeCC
Q 036949 19 TQDTALFLGMN-EDDAAYYVQQQGWTLDPA 47 (81)
Q Consensus 19 ~~~~a~~Lgls-~~e~~~~~~~~GW~~d~~ 47 (81)
+.+++.+.|.+ ++++..|...-+|-++..
T Consensus 9 ia~F~~iTG~~d~~~A~~~Lea~nWDLe~A 38 (45)
T 3e21_A 9 LADFQACTGIENIDEAITLLEQNNWDLVAA 38 (45)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHcCCcHHHH
Confidence 45688999997 599999999999998754
No 22
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=86.66 E-value=1.5 Score=25.07 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcc-cccHHHHHHHhCCCHHHHHHHHHhc-CCe
Q 036949 4 KRMFQLLMSAYS-TISTQDTALFLGMNEDDAAYYVQQQ-GWT 43 (81)
Q Consensus 4 ~~~~~li~~AY~-sIs~~~~a~~Lgls~~e~~~~~~~~-GW~ 43 (81)
.++...|..-|. .++++++|..+|+|+..+.....+. |=+
T Consensus 8 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s 49 (108)
T 3oou_A 8 QNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEH 49 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 466777777775 6999999999999999887777654 544
No 23
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=86.57 E-value=1.2 Score=25.70 Aligned_cols=40 Identities=20% Similarity=0.334 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcc-cccHHHHHHHhCCCHHHHHHHHHhc-CCe
Q 036949 4 KRMFQLLMSAYS-TISTQDTALFLGMNEDDAAYYVQQQ-GWT 43 (81)
Q Consensus 4 ~~~~~li~~AY~-sIs~~~~a~~Lgls~~e~~~~~~~~-GW~ 43 (81)
.++...|..-|. .++++++|..+|+|+..+...+.+. |=+
T Consensus 10 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s 51 (113)
T 3oio_A 10 TEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTV 51 (113)
T ss_dssp HHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 356777777764 5999999999999999988877765 644
No 24
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=86.00 E-value=0.99 Score=25.61 Aligned_cols=37 Identities=8% Similarity=0.136 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhc---ccccHHHHHHHh-CCCHHHHHHHHHh
Q 036949 3 TKRMFQLLMSAY---STISTQDTALFL-GMNEDDAAYYVQQ 39 (81)
Q Consensus 3 R~~~~~li~~AY---~sIs~~~~a~~L-gls~~e~~~~~~~ 39 (81)
|.+|++...+-. ..+.++.+|... |+|+.|+...|.+
T Consensus 16 R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~e 56 (86)
T 2krk_A 16 RLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 56 (86)
T ss_dssp HHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 778888777655 368888999888 9999999888774
No 25
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=85.61 E-value=0.33 Score=26.61 Aligned_cols=23 Identities=17% Similarity=0.531 Sum_probs=17.1
Q ss_pred HHHHhCC-CHHHHHHHHHhcCCeE
Q 036949 22 TALFLGM-NEDDAAYYVQQQGWTL 44 (81)
Q Consensus 22 ~a~~Lgl-s~~e~~~~~~~~GW~~ 44 (81)
++.+|-= ..+++++||+++||.+
T Consensus 22 I~DLLksvds~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 22 INDLLQAVDSQEVRDYCEKKGWIV 45 (60)
T ss_dssp THHHHHHHCCHHHHHHHHHHTCCC
T ss_pred HHHHHHcCCCHHHHHHHHHCCcee
Confidence 3444433 4488999999999997
No 26
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=85.60 E-value=2.2 Score=24.92 Aligned_cols=41 Identities=10% Similarity=0.003 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhc-ccccHHHHHHHhCCCHHHHHHHHHhcCCe
Q 036949 3 TKRMFQLLMSAY-STISTQDTALFLGMNEDDAAYYVQQQGWT 43 (81)
Q Consensus 3 R~~~~~li~~AY-~sIs~~~~a~~Lgls~~e~~~~~~~~GW~ 43 (81)
-+++...|..-| ..++++++|..+|+|+.-+.....+.|=+
T Consensus 9 ~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~G~s 50 (120)
T 3mkl_A 9 RTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEETS 50 (120)
T ss_dssp HHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHcCCC
Confidence 456777787776 47899999999999999998887765543
No 27
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=85.46 E-value=3.2 Score=27.94 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=36.8
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHhc-CCeEeCCCceEe
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQ-GWTLDPASRMLT 52 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~~-GW~~d~~~~~~~ 52 (81)
-+++++. -=+-++++++|.-+|.+.+++.+...+. +..+|.+|+++-
T Consensus 26 ~llr~la-~Grpv~~~~LA~~~g~~~~~v~~~L~~l~~~~~D~~G~Ivg 73 (220)
T 3f2g_A 26 PLLRELA-KGRPVSRTTLAGILDWPAERVAAVLEQATSTEYDKDGNIIG 73 (220)
T ss_dssp HHHHHHT-TTSCBCHHHHHHHHTCCHHHHHHHHHHCTTCEECTTSCEEE
T ss_pred HHHHHHh-cCCCCCHHHHHHHhCcCHHHHHHHHHhCCcEEECCCCCEEE
Confidence 3444444 3356789999999999999999999877 899999887643
No 28
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=85.21 E-value=1.8 Score=30.17 Aligned_cols=52 Identities=10% Similarity=0.088 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHhcCCeEeCCCceEeec
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVK 54 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d~~~~~~~p~ 54 (81)
+..++..+...-..|++++++...|+..+|+..-.+..|+..--.|+.++-.
T Consensus 195 ~~~i~~~L~~~~~~isi~~is~~Tgi~~~Dii~tL~~l~~l~~~kg~~~i~~ 246 (276)
T 3to7_A 195 SDTLITLLVEHQKEITIDEISSMTSMTTTDILHTAKTLNILRYYKGQHIIFL 246 (276)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHCBCHHHHHHHHHHTTCEEEETTEEEEEC
T ss_pred HHHHHHHHHhcCCceeHHHHHHHhCCCHHHHHHHHHHCCCEEEeCCcEEEEE
Confidence 4567777776667899999999999999999999999999865566665544
No 29
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=84.91 E-value=1.8 Score=28.39 Aligned_cols=40 Identities=15% Similarity=0.014 Sum_probs=33.3
Q ss_pred HHHHHHHHHhccc-ccHHHHHHHhCCCHHHHHHHHHhcCCe
Q 036949 4 KRMFQLLMSAYST-ISTQDTALFLGMNEDDAAYYVQQQGWT 43 (81)
Q Consensus 4 ~~~~~li~~AY~s-Is~~~~a~~Lgls~~e~~~~~~~~GW~ 43 (81)
.++.+.|..-|.. ++++++|..+|+|+.-+...+++.|=+
T Consensus 172 ~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~G~t 212 (276)
T 3gbg_A 172 EKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVK 212 (276)
T ss_dssp HHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHHHcCCC
Confidence 4677888888876 999999999999999998888655544
No 30
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=83.96 E-value=4.1 Score=25.41 Aligned_cols=54 Identities=13% Similarity=0.177 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcc-----------cccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceEeecC
Q 036949 2 YTKRMFQLLMSAYS-----------TISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRMLTVKK 55 (81)
Q Consensus 2 ~R~~~~~li~~AY~-----------sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~~p~~ 55 (81)
.++|++..+-.-+. .++..++|.|||++.+-+-.. ..+.||---..+.+.+...
T Consensus 153 ~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~d~ 220 (227)
T 3dkw_A 153 ATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDGREISILDR 220 (227)
T ss_dssp HHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESSSCEEESCS
T ss_pred HHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecCCEEEEeCH
Confidence 35777776544332 356789999999988765444 4467996444556655543
No 31
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=83.90 E-value=4.6 Score=25.04 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhcc-------cccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceEe
Q 036949 2 YTKRMFQLLMSAYS-------TISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRMLT 52 (81)
Q Consensus 2 ~R~~~~~li~~AY~-------sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~~ 52 (81)
.++|++..+-.-.. .++..++|.|||++.+-+-.. ..+.|+---..+.+.+
T Consensus 148 ~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 208 (220)
T 3dv8_A 148 LDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVKLSRGKITI 208 (220)
T ss_dssp HHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 45677666654332 678899999999988776444 4467886433444433
No 32
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.53 E-value=1.7 Score=30.94 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=29.9
Q ss_pred HhcccccHHHHHHHhCCCHHHHHHHHHh---cCC---eEeCCCceEee
Q 036949 12 SAYSTISTQDTALFLGMNEDDAAYYVQQ---QGW---TLDPASRMLTV 53 (81)
Q Consensus 12 ~AY~sIs~~~~a~~Lgls~~e~~~~~~~---~GW---~~d~~~~~~~p 53 (81)
+.|++|+.+.+|..||++.+++..++.+ .|- ++|.-.+++..
T Consensus 303 ~~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v 350 (393)
T 4b4t_O 303 KNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTI 350 (393)
T ss_dssp SSCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC
T ss_pred CCCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEE
Confidence 3478899999999999999998877654 122 45654444433
No 33
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=83.41 E-value=0.51 Score=28.53 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCC---CHHH
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGM---NEDD 32 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgl---s~~e 32 (81)
+|++|+.++.. .-++..+++..||+ ++.+
T Consensus 12 ~Re~Ii~lL~~--~plta~ei~~~l~i~~~~~ke 43 (105)
T 2gmg_A 12 RREKIIELLLE--GDYSPSELARILDMRGKGSKK 43 (105)
T ss_dssp HHHHHHHHTTT--SCBCTTHHHHSSCCCSSCCHH
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHhCCCCCChHH
Confidence 69999999984 88899999999999 6677
No 34
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=83.03 E-value=1.7 Score=25.81 Aligned_cols=37 Identities=5% Similarity=0.096 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcc-cccHHHHHHHhCCCHHHHHHHHHhc
Q 036949 4 KRMFQLLMSAYS-TISTQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 4 ~~~~~li~~AY~-sIs~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
.++...|..-|. .++++++|..+|+|...+.....+.
T Consensus 14 ~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 14 HSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456777777765 6999999999999998887776654
No 35
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=82.49 E-value=1.9 Score=23.72 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhc---ccccHHHHHHHh-CCCHHHHHHHHHh
Q 036949 3 TKRMFQLLMSAY---STISTQDTALFL-GMNEDDAAYYVQQ 39 (81)
Q Consensus 3 R~~~~~li~~AY---~sIs~~~~a~~L-gls~~e~~~~~~~ 39 (81)
|.+|++...+-+ ..+.++.+|... |+|+.|+...|.+
T Consensus 6 R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~e 46 (83)
T 3aji_B 6 KRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQE 46 (83)
T ss_dssp HHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 778888777655 367888888888 9999999998875
No 36
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=81.09 E-value=1.8 Score=24.85 Aligned_cols=43 Identities=5% Similarity=-0.002 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh---cCCeEeC
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ---QGWTLDP 46 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~---~GW~~d~ 46 (81)
++++|+.++.+ -. ++..++|+-||+|...+..+..+ .|-....
T Consensus 18 ~~~~IL~lL~~-~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 18 IVCEAIKTIGI-EG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHHHHHSS-ST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHHHHHH-cC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 57889988884 44 99999999999999998888664 3776643
No 37
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=80.08 E-value=1.5 Score=20.97 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=21.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCeEe
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQGWTLD 45 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~GW~~d 45 (81)
+..+..| |++.+++.......+|-++
T Consensus 8 i~~L~~m-Gf~~~~a~~AL~~~~~n~e 33 (40)
T 1z96_A 8 IAQLVSM-GFDPLEAAQALDAANGDLD 33 (40)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHTTTCHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHcCCCHH
Confidence 5678887 9999999888888888654
No 38
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=79.97 E-value=1.4 Score=30.73 Aligned_cols=52 Identities=12% Similarity=0.061 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHhcCCeEeCCCceEeec
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVK 54 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d~~~~~~~p~ 54 (81)
+..++..+.+.-..|++++++...|+..+|+..-.+..|+...-.|..++..
T Consensus 195 ~~~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l~~l~~~kg~~~i~~ 246 (278)
T 2pq8_A 195 SWVLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSLNMVKYWKGQHVICV 246 (278)
T ss_dssp HHHHHHHTC-------CHHHHHHHCBCHHHHHHHHHHTTCEEC----CEECC
T ss_pred HHHHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHCCCEEEeCCcEEEEE
Confidence 4567777766567899999999999999999999999999865556555543
No 39
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=79.89 E-value=3.7 Score=24.18 Aligned_cols=40 Identities=3% Similarity=0.140 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcc---cccHHHHHHHhCCCHHHHHHHHHhcCCe
Q 036949 4 KRMFQLLMSAYS---TISTQDTALFLGMNEDDAAYYVQQQGWT 43 (81)
Q Consensus 4 ~~~~~li~~AY~---sIs~~~~a~~Lgls~~e~~~~~~~~GW~ 43 (81)
.+|++.|-.-+. ..++.++|.-.|.|+.-+..||++.|..
T Consensus 24 ~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kklG~~ 66 (111)
T 2o3f_A 24 RKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLK 66 (111)
T ss_dssp HHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHHcCCC
Confidence 355665555443 5788999999999999999999998865
No 40
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=79.53 E-value=5 Score=22.71 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.|.+|+.++ ....++..++|..||++..-+-.... +.||..
T Consensus 22 ~r~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~ 65 (114)
T 2oqg_A 22 TRWEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQACGLVE 65 (114)
T ss_dssp HHHHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCee
Confidence 467888888 34679999999999998877765544 579975
No 41
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=79.25 E-value=12 Score=26.01 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHh-cccccHHHHHHHhCCCHHHHHHHHH---hcCCeEeC
Q 036949 2 YTKRMFQLLMSA-YSTISTQDTALFLGMNEDDAAYYVQ---QQGWTLDP 46 (81)
Q Consensus 2 ~R~~~~~li~~A-Y~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~d~ 46 (81)
.|++|++++.++ -..+|-+++|..||+|...+-+.++ +.|..+.+
T Consensus 4 ~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~ 52 (323)
T 3rkx_A 4 YSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDS 52 (323)
T ss_dssp HHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEE
Confidence 588999999765 4579999999999999888776655 56998764
No 42
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=79.07 E-value=2.8 Score=29.32 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcc------cccHHHHHHHhCCCHHHHHHHHHhcCCeEeCCCceEeec
Q 036949 3 TKRMFQLLMSAYS------TISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVK 54 (81)
Q Consensus 3 R~~~~~li~~AY~------sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d~~~~~~~p~ 54 (81)
+..++..+...-. .|++++++...|+..+|+..-.+..|...--.|+.++..
T Consensus 193 ~~~i~~~L~~~~~~~~~~~~isi~~is~~T~i~~~Dii~tL~~l~~l~~~kg~~~i~~ 250 (280)
T 2ou2_A 193 SQTILEILMGLKSESGERPQITINEISEITSIKKEDVISTLQYLNLINYYKGQYILTL 250 (280)
T ss_dssp HHHHHHHC-----------CCBHHHHHHHHCBCHHHHHHHHHHTTCCCBCSSSBBC--
T ss_pred HHHHHHHHHhcccccCCCCceeHHHHHHHhCCCHHHHHHHHHHCCcEEEECCeEEEEE
Confidence 3556665554444 799999999999999999999998888754455555543
No 43
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=78.98 E-value=2.1 Score=25.48 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=26.7
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
++..+|.. ...++++++|..+|+|+.-+....++
T Consensus 83 ~a~~~i~~-~~~~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 83 HACRLLEQ-ETPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp HHHHHTCS-SSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34455555 67899999999999998888777664
No 44
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=78.54 E-value=6.4 Score=21.66 Aligned_cols=40 Identities=8% Similarity=0.172 Sum_probs=29.4
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~ 44 (81)
+++..+......++..++|..+|++..-+-... .+.||..
T Consensus 25 ~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 25 AVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 344444455678999999999999887765554 4569985
No 45
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=78.23 E-value=3.4 Score=23.85 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.|.+|+.++.. ..++..++|..||++..-+-.... +.|+..
T Consensus 26 ~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~ 69 (108)
T 2kko_A 26 RRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGGLVE 69 (108)
T ss_dssp TTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 47788888864 789999999999999877765544 568874
No 46
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=78.14 E-value=5.8 Score=23.19 Aligned_cols=40 Identities=10% Similarity=0.112 Sum_probs=30.8
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
+++..+......++..++|..||++..-+-.. ..++||..
T Consensus 39 ~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~ 81 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIV 81 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEe
Confidence 46667766577899999999999987766444 45679985
No 47
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=78.02 E-value=5.7 Score=21.77 Aligned_cols=42 Identities=10% Similarity=0.107 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.|.+|+.++.. -..++..++|..||++..-+-.... +.||..
T Consensus 25 ~~~~il~~l~~-~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~ 69 (99)
T 3cuo_A 25 KRLLILCMLSG-SPGTSAGELTRITGLSASATSQHLARMRDEGLID 69 (99)
T ss_dssp HHHHHHHHHTT-CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHh-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 36677777754 4479999999999998877655544 568875
No 48
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=77.85 E-value=7.1 Score=23.03 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=29.4
Q ss_pred cccccHHHHHHHhCCCHH---HHHHHHHhcCCeEeC
Q 036949 14 YSTISTQDTALFLGMNED---DAAYYVQQQGWTLDP 46 (81)
Q Consensus 14 Y~sIs~~~~a~~Lgls~~---e~~~~~~~~GW~~d~ 46 (81)
-..|++.++-.+||+|-. .+.+|....|+|.--
T Consensus 78 ~~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~ 113 (121)
T 2pjp_A 78 CGSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRR 113 (121)
T ss_dssp HSSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEee
Confidence 488999999999999999 888889999999753
No 49
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=77.79 E-value=3.5 Score=26.17 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=33.5
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHhc---CCeEeCCCceEeecCCC
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQQQ---GWTLDPASRMLTVKKQP 57 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~~~---GW~~d~~~~~~~p~~~~ 57 (81)
.-+++.++|.+||++..-+.+.+.+. +++.+ +...+|..--
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~G~L~AVr~G--r~~rVP~~f~ 73 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRA--GGVVIPQVFF 73 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHTTSCCCEEET--TEEEEEGGGB
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHCCCceEEEEC--CEEEecHHHh
Confidence 35789999999999999999999864 88884 6777888653
No 50
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=77.77 E-value=9.6 Score=23.26 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=25.5
Q ss_pred cccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceEee
Q 036949 16 TISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRMLTV 53 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~~p 53 (81)
.++..++|.|||++.+-+-.. ..+.||---..+.+.+.
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i~ 204 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVF 204 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEEE
Confidence 478889999999988765444 45679953224445443
No 51
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=77.74 E-value=1.5 Score=26.52 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=17.9
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHhcCC
Q 036949 17 ISTQDTALFLGMNEDDAAYYVQQQGW 42 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~~~~GW 42 (81)
.=+.++|.+||++++++.+ +||
T Consensus 93 vvvhEiahh~G~~~e~l~~----~g~ 114 (114)
T 3e11_A 93 TVVHEIAHHFGIDDERLHE----LGY 114 (114)
T ss_dssp HHHHHHHHHTTCCHHHHHT----TTC
T ss_pred HHHHHHHHHcCCCHHHHHH----ccC
Confidence 3466799999999999864 787
No 52
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=77.22 E-value=11 Score=23.48 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcc-------------cccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceEee
Q 036949 2 YTKRMFQLLMSAYS-------------TISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRMLTV 53 (81)
Q Consensus 2 ~R~~~~~li~~AY~-------------sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~~p 53 (81)
.++|++..+-.-.. .++..++|.|||++.+-+-.. ..+.|+---..+.+.+.
T Consensus 160 ~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 227 (230)
T 3iwz_A 160 VTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHARGKTVVLY 227 (230)
T ss_dssp HHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEECCCEEEEe
Confidence 46677776554221 267899999999988765444 45679954334455443
No 53
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=76.85 E-value=6.9 Score=21.83 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCe
Q 036949 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWT 43 (81)
Q Consensus 4 ~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~ 43 (81)
++|.+.| +....++++++|..||+|+.-+..-. .++|--
T Consensus 5 ~~Il~~L-~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 5 IQVRDLL-ALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHH-HHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHH-HHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 3566666 45789999999999999987764443 345654
No 54
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=76.83 E-value=3.7 Score=22.92 Aligned_cols=41 Identities=10% Similarity=0.169 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.|.+|+.++.. ...+..++|..||+|..-+-.... +.|+..
T Consensus 24 ~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~ 67 (98)
T 3jth_A 24 RRLQILCMLHN--QELSVGELCAKLQLSQSALSQHLAWLRRDGLVT 67 (98)
T ss_dssp HHHHHHHHTTT--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 36788888876 789999999999999887765554 568874
No 55
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=76.48 E-value=6.1 Score=22.02 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeEe
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTLD 45 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~d 45 (81)
.|.+|+.++ -..++..++|..||+|..-+.... .+.|+...
T Consensus 32 ~r~~Il~~L---~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 32 VRRKILRML---DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp HHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 467888888 356999999999999887765554 45698764
No 56
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=75.71 E-value=7.8 Score=21.22 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeE
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~ 44 (81)
+-+++.++.. ...++..++|..+|++..-+-..+ .+.||..
T Consensus 22 ~~~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 22 DVRIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4567777754 577999999999999887765554 4679975
No 57
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=75.46 E-value=6.4 Score=23.74 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.+.+|+.++..- ..++..++|..||+|...+..... +.|+-.
T Consensus 9 ~d~~il~~L~~~-~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 53 (152)
T 2cg4_A 9 LDRGILEALMGN-ARTAYAELAKQFGVSPETIHVRVEKMKQAGIIT 53 (152)
T ss_dssp HHHHHHHHHHHC-TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcc
Confidence 356788877653 789999999999999988766654 457764
No 58
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=75.32 E-value=7.5 Score=21.80 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcc---cccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 3 TKRMFQLLMSAYS---TISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~AY~---sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.++|+.++. ... .++..++|..||+|...+..... +.|+..
T Consensus 12 ~~~IL~~L~-~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~ 58 (81)
T 1qbj_A 12 EQRILKFLE-ELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHH-HHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHH-HcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 466777777 445 89999999999999887776654 458875
No 59
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=74.84 E-value=2.1 Score=22.85 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.0
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHh
Q 036949 17 ISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~~~ 39 (81)
++..++|.+||+|..-+..+..+
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHC
Confidence 67889999999999999887754
No 60
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=74.78 E-value=7.2 Score=22.37 Aligned_cols=39 Identities=8% Similarity=0.045 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCe
Q 036949 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWT 43 (81)
Q Consensus 4 ~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~ 43 (81)
++|.+.| +....++++++|..||+|+.-+..-. .++|--
T Consensus 5 ~~Il~~L-~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l 46 (87)
T 2k02_A 5 MEVRDML-ALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKV 46 (87)
T ss_dssp HHHHHHH-HHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHH-HHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 3566666 45789999999999999987765443 345643
No 61
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=74.73 E-value=11 Score=23.49 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=22.4
Q ss_pred cccHHHHHHHhCCCHHHHHHH---HHhcCCeEe
Q 036949 16 TISTQDTALFLGMNEDDAAYY---VQQQGWTLD 45 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d 45 (81)
.++..++|.|||++.+-+-.. ..+.||---
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 578899999999988765444 456799654
No 62
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=74.57 E-value=5.4 Score=23.43 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=29.4
Q ss_pred HHHHHHHHhc---ccccHHHHHHHhCCCHHHHHHHHHhcCCe
Q 036949 5 RMFQLLMSAY---STISTQDTALFLGMNEDDAAYYVQQQGWT 43 (81)
Q Consensus 5 ~~~~li~~AY---~sIs~~~~a~~Lgls~~e~~~~~~~~GW~ 43 (81)
+|++.|-.-+ ...++.++|.-.|.|+.-+..||++.|..
T Consensus 21 ~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~ 62 (107)
T 3iwf_A 21 KIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPG 62 (107)
T ss_dssp HHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCC
Confidence 4555554444 35788899999999999999999988753
No 63
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=74.56 E-value=13 Score=23.68 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=26.9
Q ss_pred cccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceEeec
Q 036949 16 TISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRMLTVK 54 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~~p~ 54 (81)
.++..++|.|||++.+-+-.. ..+.|+---..+.+.+..
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~I~d 234 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIHKKKITVHK 234 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEECC
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEcCCEEEECC
Confidence 467889999999987765444 456798654455555544
No 64
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=74.50 E-value=7.9 Score=21.97 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.|-+|+.++. -..+++.++|..||++..-+-.... +.||..
T Consensus 27 ~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~ 70 (106)
T 1r1u_A 27 NRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVK 70 (106)
T ss_dssp HHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 4778888887 4678999999999999877655544 568875
No 65
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=74.22 E-value=7.9 Score=22.21 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
|-+|+.++.. ..+++.++|..||++..-+-.... +.|+..
T Consensus 34 ~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~ 76 (119)
T 2lkp_A 34 RLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVV 76 (119)
T ss_dssp HHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 5577888876 679999999999998877655544 469975
No 66
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=74.10 E-value=7.4 Score=23.37 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
+.+|+.++.. ...++..++|..||+|...+..... +.|+-.
T Consensus 11 d~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 11 DMQLVKILSE-NSRLTYRELADILNTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4577887765 4789999999999999888766554 468874
No 67
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=74.00 E-value=8.8 Score=20.97 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=17.9
Q ss_pred cccccHHHHHHHhCCCHHHHHHH
Q 036949 14 YSTISTQDTALFLGMNEDDAAYY 36 (81)
Q Consensus 14 Y~sIs~~~~a~~Lgls~~e~~~~ 36 (81)
+.-.+..++|..||+|..-+...
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~ 56 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVH 56 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 67788999999999988665443
No 68
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=73.83 E-value=7.8 Score=23.21 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
++.+|+.++.. ...++..++|..||+|...+..... +.|+--
T Consensus 6 ~d~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 50 (144)
T 2cfx_A 6 IDLNIIEELKK-DSRLSMRELGRKIKLSPPSVTERVRQLESFGIIK 50 (144)
T ss_dssp HHHHHHHHHHH-CSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 35578887754 4789999999999999888766655 458874
No 69
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=73.81 E-value=7.7 Score=20.24 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHhcC
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQG 41 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~~G 41 (81)
|+-|...+.++ . +...+|..||+|..-+-.-..+.|
T Consensus 23 r~~I~~aL~~~-g--n~~~aA~~LGIsr~tL~rklkk~g 58 (61)
T 1g2h_A 23 AQVLKLFYAEY-P--STRKLAQRLGVSHTAIANKLKQYG 58 (61)
T ss_dssp HHHHHHHHHHS-C--SHHHHHHHTTSCTHHHHHHHHTTT
T ss_pred HHHHHHHHHHh-C--CHHHHHHHhCCCHHHHHHHHHHhC
Confidence 34455566665 3 567899999999888876666544
No 70
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=73.57 E-value=5.1 Score=19.09 Aligned_cols=35 Identities=17% Similarity=0.272 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHhcC
Q 036949 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQG 41 (81)
Q Consensus 4 ~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~~G 41 (81)
..+..++.. .++..++|..||+|..-+-.+....|
T Consensus 12 ~~i~~l~~~---g~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 12 EQISRLLEK---GHPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp HHHHHHHHT---TCCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred HHHHHHHHc---CCCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 445555432 38899999999999988877766544
No 71
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=73.39 E-value=8.4 Score=22.29 Aligned_cols=41 Identities=15% Similarity=0.129 Sum_probs=31.2
Q ss_pred HHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeE
Q 036949 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTL 44 (81)
Q Consensus 4 ~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~ 44 (81)
-.++..+......++..++|..+|++..-+-..+ .++||..
T Consensus 40 ~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 40 WLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVR 83 (146)
T ss_dssp HHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCee
Confidence 3566677556788999999999999877665554 4679985
No 72
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=73.36 E-value=7.3 Score=22.65 Aligned_cols=38 Identities=5% Similarity=-0.052 Sum_probs=29.5
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+. ...++..++|..||++..-+-.. ..++||..
T Consensus 41 ~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 41 LVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVV 81 (146)
T ss_dssp HHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEE
Confidence 4566666 78899999999999987665544 44679985
No 73
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=73.11 E-value=8.1 Score=23.29 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCe
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWT 43 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~ 43 (81)
.+.+|+.++.+ ...++..++|..||+|...+..... +.|+-
T Consensus 8 ~~~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i 51 (151)
T 2cyy_A 8 IDKKIIKILQN-DGKAPLREISKITGLAESTIHERIRKLRESGVI 51 (151)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 35678887765 3689999999999999988766544 45765
No 74
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=72.90 E-value=5.7 Score=25.91 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=32.6
Q ss_pred HHHHHhcccccHHHHHHHhCCCHHHHHHHHHhcCCeEe
Q 036949 8 QLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLD 45 (81)
Q Consensus 8 ~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d 45 (81)
+.|...|-..|.+++. .-|+++.+++++++++|=..+
T Consensus 46 ~imr~~yPn~S~~~l~-~~~~t~~e~iky~~s~g~~~~ 82 (174)
T 1cv8_A 46 AVMRFLHPNLQGQQFQ-FTGLTPREMIYFGQTQGRSPQ 82 (174)
T ss_dssp HHHHHHCSSCCHHHHH-HCCCCHHHHHHHHHHTTCCCE
T ss_pred HHHHHHCCCCCHHHHh-hcCCCHHHHHHHHHHcCCChh
Confidence 4678899999999999 999999999999999876654
No 75
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=72.88 E-value=9.4 Score=20.80 Aligned_cols=41 Identities=7% Similarity=0.133 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
|-+|+.++.. ...++..++|..||++..-+-.... +.||..
T Consensus 18 ~~~iL~~L~~-~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~ 61 (100)
T 1ub9_A 18 RLGIMIFLLP-RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVK 61 (100)
T ss_dssp HHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHh-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 5667777753 4679999999999998877655544 569986
No 76
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=72.03 E-value=4.4 Score=19.91 Aligned_cols=28 Identities=25% Similarity=0.617 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCeEeC
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQGWTLDP 46 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~GW~~d~ 46 (81)
+..+....|.+++.+..+...-+|.++.
T Consensus 9 i~~F~~iTg~~~~~A~~~L~~~~wdle~ 36 (46)
T 1v92_A 9 LREFVAVTGAEEDRARFFLESAGWDLQI 36 (46)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTSCSHH
T ss_pred HHHHHHHhCcCHHHHHHHHHHcCCCHHH
Confidence 5678888999999999999999998753
No 77
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=71.81 E-value=9.5 Score=22.90 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.+.+|+.++.. ...++..++|..+|+|...+..... +.|+-.
T Consensus 8 ~~~~iL~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 52 (150)
T 2w25_A 8 IDRILVRELAA-DGRATLSELATRAGLSVSAVQSRVRRLESRGVVQ 52 (150)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 35678888853 5789999999999999888766554 568873
No 78
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=71.63 E-value=13 Score=23.45 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhc--------ccccHHHHHHHhCCCHHHHH---HHHHhcCCeEeCCCceEee
Q 036949 2 YTKRMFQLLMSAY--------STISTQDTALFLGMNEDDAA---YYVQQQGWTLDPASRMLTV 53 (81)
Q Consensus 2 ~R~~~~~li~~AY--------~sIs~~~~a~~Lgls~~e~~---~~~~~~GW~~d~~~~~~~p 53 (81)
.++|++..+-.-. -.++..++|.|||++.+-+- .-..+.|+---..+.+.+.
T Consensus 164 ~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~~~~~i~I~ 226 (232)
T 1zyb_A 164 LKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIELHRKEILIP 226 (232)
T ss_dssp HHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEEETTEEEES
T ss_pred HHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEecCCEEEEe
Confidence 5678887765532 24788999999999876654 3445679853224455443
No 79
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=71.52 E-value=8.3 Score=23.48 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=31.0
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+......++..++|..||++..-+-.. ..++||..
T Consensus 57 ~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 57 VTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp HHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 46667766667799999999999987666554 45679986
No 80
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=71.32 E-value=11 Score=21.79 Aligned_cols=41 Identities=10% Similarity=0.237 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 4 ~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.+++.++..+-..++..++|..+|++..-+-.. ..++||..
T Consensus 29 ~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 29 GAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 456666754557899999999999987766554 44679985
No 81
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=71.30 E-value=10 Score=22.09 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=29.4
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+... ..++..++|..+|++..-+-.. ..++||..
T Consensus 41 ~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 82 (143)
T 3oop_A 41 SVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRKELIV 82 (143)
T ss_dssp HHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCee
Confidence 455566554 8899999999999987766555 45679985
No 82
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=71.25 E-value=10 Score=22.16 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.|-+|+.++.. ...++..++|..||++..-+-.... +.||..
T Consensus 43 ~rl~IL~~L~~-~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~ 87 (122)
T 1u2w_A 43 NRAKITYALCQ-DEELCVCDIANILGVTIANASHHLRTLYKQGVVN 87 (122)
T ss_dssp HHHHHHHHHHH-SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 36678888864 4679999999999999888766655 468875
No 83
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=70.64 E-value=1.5 Score=24.27 Aligned_cols=37 Identities=11% Similarity=0.098 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhc---ccccHHHHHHHh-CCCHHHHHHHHHh
Q 036949 3 TKRMFQLLMSAY---STISTQDTALFL-GMNEDDAAYYVQQ 39 (81)
Q Consensus 3 R~~~~~li~~AY---~sIs~~~~a~~L-gls~~e~~~~~~~ 39 (81)
|.+|++...+-. ..+.++.+|... |+|+.|+...|.+
T Consensus 3 R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~e 43 (82)
T 2dzn_B 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQE 43 (82)
T ss_dssp -----------CEECTTCCSTTTTTSSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 566666555544 367788888777 9999999888764
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=70.55 E-value=6.8 Score=18.21 Aligned_cols=33 Identities=6% Similarity=0.086 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
|..++.+. ..-.+..++|..||+|..-+..+..
T Consensus 11 ~~~i~~~~---~~g~s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 11 RAQLDVMK---LLNVSLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp HHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34455544 3457899999999999988887765
No 85
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=70.02 E-value=16 Score=22.33 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhc-------------ccccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceEe
Q 036949 2 YTKRMFQLLMSAY-------------STISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRMLT 52 (81)
Q Consensus 2 ~R~~~~~li~~AY-------------~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~~ 52 (81)
.++|++.++-.-. -.++..++|.|||++.+-+-.. ..+.||---..+.+.+
T Consensus 119 ~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 185 (202)
T 2zcw_A 119 LKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQL 185 (202)
T ss_dssp HHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 4667777665432 2367889999999988765444 4567986433444444
No 86
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=69.90 E-value=9.6 Score=22.48 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.|-+|+.++.. ...+..++|..||++..-+-.... +.||..
T Consensus 47 ~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~ 90 (122)
T 1r1t_A 47 NRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVS 90 (122)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 36678888864 578999999999999877765544 569876
No 87
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=69.85 E-value=9.9 Score=19.81 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=22.1
Q ss_pred cHHHHHHHhCCCHHHHHHHHHhcCCeE
Q 036949 18 STQDTALFLGMNEDDAAYYVQQQGWTL 44 (81)
Q Consensus 18 s~~~~a~~Lgls~~e~~~~~~~~GW~~ 44 (81)
+...+|..||+|..-+-.-..+.|...
T Consensus 34 n~~~aA~~LGisr~tL~rklkk~gi~~ 60 (63)
T 3e7l_A 34 DLKRTAEEIGIDLSNLYRKIKSLNIRV 60 (63)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHhCCCC
Confidence 467899999999999888888777653
No 88
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=69.82 E-value=4.6 Score=22.88 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH
Q 036949 1 LYTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 1 ~~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
++|+++..|+. --.-..+|.-||++..++..|..
T Consensus 10 ~~r~~l~~lL~----g~dW~~LA~~Lg~~~~~I~~~~~ 43 (85)
T 1ngr_A 10 TKREEVEKLLN----GDTWRHLAGELGYQPEHIDSFTH 43 (85)
T ss_dssp TTTHHHHHHSC----TTHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhC----cCCHHHHHHHcCCCHHHHHHHHc
Confidence 35778887777 55667899999999988888765
No 89
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=69.46 E-value=7.7 Score=22.51 Aligned_cols=41 Identities=12% Similarity=0.175 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.|-+|+.++.. ...+..++|..||+|..-+-.... +.|+..
T Consensus 19 ~R~~Il~~L~~--~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~ 62 (118)
T 3f6o_A 19 TRRAVLGRLSR--GPATVSELAKPFDMALPSFMKHIHFLEDSGWIR 62 (118)
T ss_dssp HHHHHHHHHHT--CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeE
Confidence 47889998873 788999999999999877765544 568874
No 90
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A {Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A* 2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Probab=69.46 E-value=6.7 Score=30.66 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH-hcCCe--EeCCCceEeecCCC
Q 036949 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ-QQGWT--LDPASRMLTVKKQP 57 (81)
Q Consensus 4 ~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~-~~GW~--~d~~~~~~~p~~~~ 57 (81)
+-+.+-++-||.-=.+.++|+-||=..++...|.+ +++|+ +|++..++.|+...
T Consensus 440 ~svS~TLEYay~D~~iaq~Ak~LGk~~~d~~~y~~Rs~nyrnlfd~~tgf~rpr~~d 496 (744)
T 2wvx_A 440 ENAARTLEYAYDDWCIYRLAKELKRPKKEISLFAKRAMNYKNLFDKESKLMRGRNED 496 (744)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTGGGGGEETTTTEECCBCTT
T ss_pred CchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCCccCcccccCCC
Confidence 45677889999999999999999964777888877 56998 89988888888554
No 91
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=69.30 E-value=17 Score=22.64 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=26.0
Q ss_pred cccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceEee
Q 036949 16 TISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRMLTV 53 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~~p 53 (81)
.++..++|.|||++.+-+-.. ..+.||---..+.+.+.
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 215 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSPRSVTLL 215 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSCEEES
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecCCEEEEe
Confidence 467899999999988776444 44678875434455443
No 92
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=68.20 E-value=12 Score=21.61 Aligned_cols=34 Identities=9% Similarity=0.079 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
+.+|+.++.... +++.++|..+|+|..-+.....
T Consensus 9 ~~~I~~~l~~~~--~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 9 TIKIGKYIVETK--KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHcC--CCHHHHHHHHCCCHHHHHHHHc
Confidence 456777777665 8999999999999877766554
No 93
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=68.19 E-value=11 Score=23.46 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
++.+|+.++.+ -..++..++|..||+|...+..... +.|+-.
T Consensus 18 ~d~~IL~~L~~-~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~ 62 (171)
T 2ia0_A 18 LDRNILRLLKK-DARLTISELSEQLKKPESTIHFRIKKLQERGVIE 62 (171)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 35678888865 4679999999999999988766655 568864
No 94
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=67.97 E-value=13 Score=22.02 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=28.3
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
+..-.-.--+..+|+.++|+..|||++++..+...
T Consensus 39 K~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~ 73 (101)
T 2oa4_A 39 KIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSA 73 (101)
T ss_dssp HHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 44445556678999999999999999999988764
No 95
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=67.75 E-value=10 Score=22.62 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.+.+|+.++.. -..++..++|..||+|...+..... +.|+--
T Consensus 4 ~~~~il~~L~~-~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 4 IDLRILKILQY-NAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp HHHHHHHHHTT-CTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 46778888764 4579999999999999888766544 567753
No 96
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding, nucleotide- binding, protein kinase inhibitor, sporulation; 3.01A {Bacillus subtilis}
Probab=67.66 E-value=5.4 Score=25.06 Aligned_cols=31 Identities=3% Similarity=-0.006 Sum_probs=26.9
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHhcCCeEeC
Q 036949 16 TISTQDTALFLGMNEDDAAYYVQQQGWTLDP 46 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d~ 46 (81)
--.++.+|+..|||.+|+++.-.+.-|.+-.
T Consensus 14 g~DL~~vA~~~gls~~evi~~h~~~~y~V~~ 44 (141)
T 2zp2_A 14 GPDLEEVAKINQLSPEEVIDIHTNGEYVVYM 44 (141)
T ss_dssp CTTHHHHHHHTTCCHHHHHHHHTTCCEEEEC
T ss_pred CCCHHHHHHHhCcCHHHHHHHHhCCCeEEEE
Confidence 3578899999999999999999988888743
No 97
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=67.60 E-value=13 Score=22.57 Aligned_cols=41 Identities=7% Similarity=0.156 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
+.+|+.++.+ ...++..++|..||+|...+..... +.|+-.
T Consensus 12 ~~~il~~L~~-~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 55 (162)
T 2p5v_A 12 DIKILQVLQE-NGRLTNVELSERVALSPSPCLRRLKQLEDAGIVR 55 (162)
T ss_dssp HHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 5677887754 4579999999999999887766544 568764
No 98
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=67.37 E-value=18 Score=21.98 Aligned_cols=37 Identities=11% Similarity=0.246 Sum_probs=25.1
Q ss_pred cccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceEe
Q 036949 16 TISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRMLT 52 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~~ 52 (81)
.++..++|.|||++.+-+-.. ..+.||---..+.+.+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 206 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVV 206 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCCCEEEE
Confidence 577899999999987765444 4467986433444443
No 99
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=67.23 E-value=8.7 Score=21.48 Aligned_cols=41 Identities=10% Similarity=0.117 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.|-+|+..+.. ...+..++|..||++..-+-.... +.||..
T Consensus 24 ~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~ 67 (102)
T 3pqk_A 24 VRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVE 67 (102)
T ss_dssp HHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 47788888865 679999999999998776655544 568874
No 100
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=67.04 E-value=14 Score=22.63 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=32.5
Q ss_pred hHHHHHHHHHH----h---cccccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceEe
Q 036949 2 YTKRMFQLLMS----A---YSTISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRMLT 52 (81)
Q Consensus 2 ~R~~~~~li~~----A---Y~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~~ 52 (81)
.++|++.++-. . --.++..++|.|||++.+-+-.. ..+.|+---..+.+.+
T Consensus 142 ~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 202 (216)
T 4ev0_A 142 ARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGPGTVEV 202 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 35667766642 1 24578899999999988766444 4467887433444433
No 101
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=66.95 E-value=10 Score=24.27 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.|.+|+.++.. ..++..++|..+|+|..-+..... +.|+-.
T Consensus 21 ~~~~IL~~L~~--~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~ 64 (192)
T 1uly_A 21 TRRKILKLLRN--KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVE 64 (192)
T ss_dssp HHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 46788999974 689999999999999887765544 568875
No 102
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=66.62 E-value=12 Score=23.49 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV 37 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~ 37 (81)
+.+|+.++.+.-..++..++|..||+|..-+....
T Consensus 23 ~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi 57 (187)
T 1j5y_A 23 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDI 57 (187)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 45677888765456999999999999986654443
No 103
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=66.43 E-value=17 Score=21.23 Aligned_cols=41 Identities=15% Similarity=0.072 Sum_probs=30.7
Q ss_pred HHHHHHHHhc--ccccHHHHHHHhCCCHHHHHHHHH---hcCCeEe
Q 036949 5 RMFQLLMSAY--STISTQDTALFLGMNEDDAAYYVQ---QQGWTLD 45 (81)
Q Consensus 5 ~~~~li~~AY--~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~d 45 (81)
+++..+...+ ..++..++|..+|+|..-+.+... +.||...
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~ 58 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKS 58 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEe
Confidence 4566677665 569999999999999877766544 5699653
No 104
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=66.40 E-value=13 Score=20.61 Aligned_cols=29 Identities=7% Similarity=-0.159 Sum_probs=22.9
Q ss_pred ccHHHHHHHhCCCHHHHHHH---HHhcCCeEe
Q 036949 17 ISTQDTALFLGMNEDDAAYY---VQQQGWTLD 45 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~---~~~~GW~~d 45 (81)
++..++|..+|++..-+-.. ..++||..+
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~ 62 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVEC 62 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccC
Confidence 99999999999987665544 456799844
No 105
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=66.09 E-value=13 Score=23.18 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCe
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWT 43 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~ 43 (81)
.+.+|+.++.+ ...++..++|..||+|+..+..... +.|+-
T Consensus 28 ~d~~IL~~L~~-~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 28 IDKKIIKILQN-DGKAPLREISKITGLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 35677887765 4689999999999999988766544 45765
No 106
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=65.93 E-value=15 Score=21.71 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=29.1
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..||++..-+-.. ..++||..
T Consensus 53 ~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~ 94 (162)
T 2fa5_A 53 RVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIR 94 (162)
T ss_dssp HHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 45556654 67899999999999987665444 45679986
No 107
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=65.86 E-value=15 Score=20.54 Aligned_cols=37 Identities=5% Similarity=0.100 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
.|-+|+.++.. ....+..++|..||++..-+-.....
T Consensus 28 ~Rl~IL~~l~~-~~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 28 MRLKIVNELYK-HKALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp HHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 47778854433 36799999999999999888777764
No 108
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=65.60 E-value=22 Score=22.13 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=31.6
Q ss_pred hHHHHHHHHHH---hc----------ccccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceE
Q 036949 2 YTKRMFQLLMS---AY----------STISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRML 51 (81)
Q Consensus 2 ~R~~~~~li~~---AY----------~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~ 51 (81)
.++|++..+-. .| -.++..++|.|||++.+-+-.. ..+.|+---..+.+.
T Consensus 153 ~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~ 218 (232)
T 2gau_A 153 VRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIK 218 (232)
T ss_dssp HHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeCCCEEE
Confidence 46777776632 33 2478889999999988765444 456788533233443
No 109
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=65.59 E-value=12 Score=22.01 Aligned_cols=40 Identities=10% Similarity=0.254 Sum_probs=29.2
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+...-..++..++|..+|++..-+-.. ..++||..
T Consensus 43 ~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 85 (150)
T 3fm5_A 43 SVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVV 85 (150)
T ss_dssp HHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 45555655445689999999999987766555 44679985
No 110
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=65.44 E-value=12 Score=19.26 Aligned_cols=23 Identities=17% Similarity=0.049 Sum_probs=17.2
Q ss_pred cccccHHHHHHHhCCCHHHHHHH
Q 036949 14 YSTISTQDTALFLGMNEDDAAYY 36 (81)
Q Consensus 14 Y~sIs~~~~a~~Lgls~~e~~~~ 36 (81)
+.-.+..++|..||+|..-+...
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~ 46 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNH 46 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHH
Confidence 55668889999999988665444
No 111
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=65.29 E-value=7.2 Score=20.58 Aligned_cols=24 Identities=4% Similarity=-0.106 Sum_probs=20.9
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHh
Q 036949 16 TISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
-|++.++|.+||+|..-+-.++.+
T Consensus 10 ~l~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 10 LVDLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp EECHHHHHHHHSSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHCcCHHHHHHHHHC
Confidence 478899999999999998888774
No 112
>2kzc_A Uncharacterized protein; DUF1476, JCSG, structutral genomics, PSI-biology, protein ST initiative, structural genomics; NMR {Jannaschia SP}
Probab=64.76 E-value=5.6 Score=22.99 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=16.7
Q ss_pred HHHHhCCCHHHHHHHHHh
Q 036949 22 TALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 22 ~a~~Lgls~~e~~~~~~~ 39 (81)
+|..||++++++..|+..
T Consensus 18 AAe~lGltg~~aeaYa~~ 35 (85)
T 2kzc_A 18 VAEVLGKSGDEANAYAAE 35 (85)
T ss_dssp HHHHHTCCHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHH
Confidence 789999999999999986
No 113
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=64.70 E-value=15 Score=20.07 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhc--ccccHHHHHHHhCCCHHHHHHHHH---hcCCeEe
Q 036949 3 TKRMFQLLMSAY--STISTQDTALFLGMNEDDAAYYVQ---QQGWTLD 45 (81)
Q Consensus 3 R~~~~~li~~AY--~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~d 45 (81)
.++|+.++...= ..++..++|..||++...+..... +.|+...
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~ 63 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQK 63 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 356776666555 379999999999999888777655 4588754
No 114
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=64.68 E-value=12 Score=20.83 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=27.9
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHHhcCCeEe
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQQQGWTLD 45 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d 45 (81)
...++.++|..=|++.+++.+..++.|.++-
T Consensus 48 ~~~TL~~aa~~~gid~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 48 RKVSLKQGSKLAGTPMDKIVRTLEANGYEVI 78 (81)
T ss_dssp HHCBHHHHHHHHTCCHHHHHHHHHHTTCEEE
T ss_pred ccCcHHHHHHHcCCCHHHHHHHHHHcCCEee
Confidence 3578999999999999999999999999874
No 115
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=64.53 E-value=17 Score=21.30 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.+.+|+.++.. -..++..++|..+|+|..-+..... +.|+-.
T Consensus 5 ~~~~il~~L~~-~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 5 RDKIILEILEK-DARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHHHHH-CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 35677877753 4678999999999999887765544 457763
No 116
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=64.49 E-value=12 Score=18.98 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=28.9
Q ss_pred cHHHHHHHhCCCHHHHHHHHHh-cCCeE--eCCCceEeec
Q 036949 18 STQDTALFLGMNEDDAAYYVQQ-QGWTL--DPASRMLTVK 54 (81)
Q Consensus 18 s~~~~a~~Lgls~~e~~~~~~~-~GW~~--d~~~~~~~p~ 54 (81)
+..++|..||++..-+-.+... ++=.+ .+.|..+.+.
T Consensus 15 s~~~~A~~lgis~~~vs~~~~~~~~~~l~~t~~G~~~~~~ 54 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRAGRSIEITLYEDGRVEANE 54 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTTCCEEEEECTTSCEEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCCCCCeEEccCceEehHh
Confidence 8899999999999999888863 46666 6666666654
No 117
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=64.40 E-value=12 Score=22.13 Aligned_cols=40 Identities=10% Similarity=0.036 Sum_probs=30.9
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCC---HHHHHHHHHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMN---EDDAAYYVQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls---~~e~~~~~~~~GW~~ 44 (81)
.++..+......++..++|..||++ ...+.+-..++||..
T Consensus 51 ~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~ 93 (160)
T 3boq_A 51 DAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVV 93 (160)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 5666776667789999999999995 455566666789986
No 118
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=64.38 E-value=7 Score=21.45 Aligned_cols=22 Identities=5% Similarity=0.120 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|..+||+..++..+...+
T Consensus 34 r~eLA~~tgLt~~qVkvWFqNR 55 (66)
T 3nau_A 34 VYRLIEVTGLARSEIKKWFSDH 55 (66)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHhhHhcccc
Confidence 4569999999999999988765
No 119
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=64.36 E-value=23 Score=22.06 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhcc----------cccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceEe
Q 036949 2 YTKRMFQLLMSAYS----------TISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRMLT 52 (81)
Q Consensus 2 ~R~~~~~li~~AY~----------sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~~ 52 (81)
.++|++..+-.-.. .++..++|.|||++.+-+-.. ..+.|+..+ .+.+.+
T Consensus 154 ~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi~~~-~~~i~I 216 (237)
T 3fx3_A 154 GAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGVTVK-RNHAEI 216 (237)
T ss_dssp HHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTEECC-TTEEEE
T ss_pred HHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEee-CCEEEE
Confidence 46777777766432 234678999999988766444 456787543 344433
No 120
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=64.16 E-value=17 Score=20.90 Aligned_cols=39 Identities=10% Similarity=0.242 Sum_probs=28.9
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
+++..+.. ...++..++|..+|++..-+-.. ..++||..
T Consensus 37 ~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~ 78 (145)
T 2a61_A 37 DILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLT 78 (145)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 45555654 56799999999999987766544 44679985
No 121
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=63.93 E-value=18 Score=20.66 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=29.2
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..+|++..-+-.. ..++||..
T Consensus 33 ~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~ 74 (138)
T 3bpv_A 33 ACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLEESGFIE 74 (138)
T ss_dssp HHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45556655 47899999999999987766544 44679986
No 122
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=63.80 E-value=11 Score=22.25 Aligned_cols=38 Identities=8% Similarity=0.128 Sum_probs=29.5
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHH---HHHHHHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDD---AAYYVQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~ 44 (81)
.++.++ ....++..++|..+|++..- +.+-..++||..
T Consensus 42 ~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 42 HVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEE
T ss_pred HHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 466677 77899999999999996544 455556789987
No 123
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=63.40 E-value=15 Score=21.52 Aligned_cols=39 Identities=8% Similarity=0.093 Sum_probs=28.8
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~ 44 (81)
+++..|.. +..++..++|..||++..-+-..+ .++||..
T Consensus 41 ~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 82 (155)
T 1s3j_A 41 FVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIA 82 (155)
T ss_dssp HHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 45556644 568999999999999877665554 4679985
No 124
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=63.37 E-value=24 Score=21.85 Aligned_cols=37 Identities=14% Similarity=0.353 Sum_probs=24.5
Q ss_pred cccHHHHHHHhCCCHHHHHH---HHHhcCCeEeCCCceEe
Q 036949 16 TISTQDTALFLGMNEDDAAY---YVQQQGWTLDPASRMLT 52 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~---~~~~~GW~~d~~~~~~~ 52 (81)
.++..++|.|||++.+-+-. -..+.||---..+.+.+
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~~~i~i 216 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRLEGKSVLI 216 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 36889999999998876544 34567885332344443
No 125
>3mml_B Allophanate hydrolase subunit 1; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=63.21 E-value=7.7 Score=26.07 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=28.5
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHhcCCeEe
Q 036949 13 AYSTISTQDTALFLGMNEDDAAYYVQQQGWTLD 45 (81)
Q Consensus 13 AY~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d 45 (81)
.|.--.++.+|+..|||.+|+++.-.+.-|.+-
T Consensus 110 ~Y~gpDL~~vA~~~GLs~~eVi~~Hs~~~y~V~ 142 (228)
T 3mml_B 110 VYDGADLHEVASLTGMTPAQVIAAHTGTPWRVG 142 (228)
T ss_dssp ECCCTTHHHHHHHHTSCHHHHHHHHHHSCEEEE
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHhCCCEEEE
Confidence 355567899999999999999999999889873
No 126
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=63.06 E-value=16 Score=21.66 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=28.8
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..+|++..-+-.. ..++||..
T Consensus 54 ~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 95 (159)
T 3s2w_A 54 PFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVF 95 (159)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34555544 47899999999999987766555 45679985
No 127
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=62.99 E-value=19 Score=20.58 Aligned_cols=39 Identities=10% Similarity=0.230 Sum_probs=29.0
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
+++..+.. ...++..++|..+|++..-+... ..++||..
T Consensus 35 ~iL~~l~~-~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 35 SILQTLLK-DAPLHQLALQERLQIDRAAVTRHLKLLEESGYII 76 (142)
T ss_dssp HHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45666654 46799999999999987766544 44679985
No 128
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=62.91 E-value=17 Score=20.55 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
|-+|+.++...=..++..++|..||+|..-+..... +.||..
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~ 64 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVS 64 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 557777775554469999999999998877655544 569964
No 129
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=62.90 E-value=9.2 Score=21.49 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHH-HHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNED-DAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~-e~~~~~~---~~GW~~ 44 (81)
.+++|+.++.+. ...+..++|..||++.. .+..... +.|...
T Consensus 12 ~~~~IL~~Lk~~-g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 12 IKEKICDYLFNV-SDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHHHT-CCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc-CCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 578888877655 57889999999999888 8877755 347765
No 130
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=62.53 E-value=15 Score=21.63 Aligned_cols=39 Identities=13% Similarity=0.242 Sum_probs=29.0
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..+|++..-+-.. ..++||..
T Consensus 45 ~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 86 (149)
T 4hbl_A 45 LVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVK 86 (149)
T ss_dssp HHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 45555654 38899999999999987766555 44679986
No 131
>1smz_A Transportan in bicellar solution with [DMPC]/[DHPC]=0.33; transport protein; NMR {Synthetic} SCOP: j.6.1.1
Probab=62.41 E-value=0.29 Score=22.43 Aligned_cols=14 Identities=43% Similarity=0.781 Sum_probs=11.1
Q ss_pred CCeEeCCCceEeec
Q 036949 41 GWTLDPASRMLTVK 54 (81)
Q Consensus 41 GW~~d~~~~~~~p~ 54 (81)
||++++.|..+-|.
T Consensus 1 GWTLNSAGYLLGp~ 14 (27)
T 1smz_A 1 GWTLNSAGYLLGKI 14 (27)
T ss_dssp CCSHHHHTTTTTTT
T ss_pred Cccccccceeeccc
Confidence 89999888877664
No 132
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=61.92 E-value=24 Score=21.42 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHh---cc----------cccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceEe
Q 036949 2 YTKRMFQLLMSA---YS----------TISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRMLT 52 (81)
Q Consensus 2 ~R~~~~~li~~A---Y~----------sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~~ 52 (81)
.++|++..+-.- |. .++..++|.|||++.+-+-.. ..+.||---..+.+.+
T Consensus 112 ~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~~~i~i 178 (195)
T 3b02_A 112 LRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIATAYRRVYL 178 (195)
T ss_dssp HHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecCCEEEE
Confidence 467777766542 22 367889999999988776544 4456985432344433
No 133
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=61.81 E-value=20 Score=20.80 Aligned_cols=39 Identities=8% Similarity=0.112 Sum_probs=29.0
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
+++..+.. ...++..++|..||++..-+-.. ..++||..
T Consensus 46 ~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 87 (150)
T 2rdp_A 46 VALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVA 87 (150)
T ss_dssp HHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 45556655 46899999999999987666554 44679985
No 134
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=61.29 E-value=17 Score=20.39 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=16.2
Q ss_pred cccccHHHHHHHhCCCHHHHHHH
Q 036949 14 YSTISTQDTALFLGMNEDDAAYY 36 (81)
Q Consensus 14 Y~sIs~~~~a~~Lgls~~e~~~~ 36 (81)
+.-.+..++|..||+|..-+..+
T Consensus 42 ~~G~s~~eIA~~L~iS~~TV~~~ 64 (90)
T 3ulq_B 42 EKGFTNQEIADALHLSKRSIEYS 64 (90)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 35567888888888887665444
No 135
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=61.21 E-value=19 Score=21.60 Aligned_cols=40 Identities=10% Similarity=0.063 Sum_probs=29.4
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.+.-..++..++|..+|++..-+-.. ..++||..
T Consensus 35 ~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~ 77 (151)
T 4aik_A 35 VTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLIT 77 (151)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeE
Confidence 35556666666788899999999987665444 45679985
No 136
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=61.11 E-value=16 Score=22.73 Aligned_cols=33 Identities=9% Similarity=0.261 Sum_probs=23.0
Q ss_pred ccHHHHHHHhCCCHHHHHH---HHHhcCCeEeCCCc
Q 036949 17 ISTQDTALFLGMNEDDAAY---YVQQQGWTLDPASR 49 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~---~~~~~GW~~d~~~~ 49 (81)
++..++|.|||++.+-+-. -..+.||---..+.
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 7889999999998866544 44567995333344
No 137
>1g4d_A Repressor protein C; protein/DNA complex, helix-turn-helix, winged-helix, bacteriophage MU; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1qpm_A
Probab=60.75 E-value=6.9 Score=21.52 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=22.7
Q ss_pred ccHHHHHHHhCC--CHHHHHHHHHhcCCeE
Q 036949 17 ISTQDTALFLGM--NEDDAAYYVQQQGWTL 44 (81)
Q Consensus 17 Is~~~~a~~Lgl--s~~e~~~~~~~~GW~~ 44 (81)
.+..++|.+-|| +..-+...+...||..
T Consensus 5 ~ta~ELa~l~glP~s~~gi~~~A~re~W~~ 34 (69)
T 1g4d_A 5 CSPQEIMAADGMPGSVAGVHYRANVQGWTK 34 (69)
T ss_dssp BCHHHHHTSTTSCSSHHHHHHHHHHHTCCE
T ss_pred CcHHHHhcCCCCCCCHHHHHHHHHHCCCCe
Confidence 466788888776 6888999999999974
No 138
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=60.50 E-value=16 Score=21.57 Aligned_cols=43 Identities=5% Similarity=0.088 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHh--CCCHHHHHHHHH---hcCCeEe
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFL--GMNEDDAAYYVQ---QQGWTLD 45 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~L--gls~~e~~~~~~---~~GW~~d 45 (81)
.+++|+.++.+ ...+++.++|..+ |+|...+.+.+. +.|..-.
T Consensus 14 ~d~~IL~~L~~-~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~ 61 (111)
T 3b73_A 14 WDDRILEIIHE-EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQP 61 (111)
T ss_dssp HHHHHHHHHHH-HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHH-cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEe
Confidence 46788888865 3589999999999 999988877766 4577653
No 139
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=60.18 E-value=15 Score=21.27 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.|.+|+.++.. ...+..++|..||+|..-+-.... +.|+..
T Consensus 22 ~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~ 65 (118)
T 2jsc_A 22 TRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVV 65 (118)
T ss_dssp HHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEE
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 47788888864 568899999999999888776655 468875
No 140
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=60.09 E-value=21 Score=20.41 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=28.2
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..+|++..-+-.. ..++||..
T Consensus 40 ~iL~~l~~-~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~ 81 (142)
T 2fbi_A 40 RVIRILRQ-QGEMESYQLANQACILRPSMTGVLARLERDGIVR 81 (142)
T ss_dssp HHHHHHHH-HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 34555544 45799999999999987766544 44679985
No 141
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=59.53 E-value=14 Score=20.88 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=21.9
Q ss_pred HHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH
Q 036949 6 MFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 6 ~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
.+..|+.--. -....+|+.|||+..++..+-.
T Consensus 16 ~~~~ia~~lg-~~Wk~Lar~Lg~~~~~I~~I~~ 47 (99)
T 1fad_A 16 AFDIVCDNVG-RDWKRLARELKVSEAKMDGIEE 47 (99)
T ss_dssp HHHHHHHHHH-HHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHh-hhHHHHHHHcCCCHHHHHHHHH
Confidence 3444443332 4567899999999999877654
No 142
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=59.48 E-value=18 Score=25.26 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=30.0
Q ss_pred HHHHHHHHHH-hcccccHHHHHHHhCCCHHHHHHHHHhcCCeE
Q 036949 3 TKRMFQLLMS-AYSTISTQDTALFLGMNEDDAAYYVQQQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~-AY~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~ 44 (81)
+..++..+.. .-..|++++++...|+..+|+..-.+..|...
T Consensus 200 ~~~il~~L~~~~~~~isi~~is~~T~i~~~DIi~tL~~l~~l~ 242 (284)
T 2ozu_A 200 KSVILECLYHQNDKQISIKKLSKLTGICPQDITSTLHHLRMLD 242 (284)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHCBCHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHhcCCCcEeHHHHHHHhCCCHHHHHHHHHHCCCEE
Confidence 4566766554 45689999999999999999999888887763
No 143
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=59.46 E-value=11 Score=23.30 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
.|.+|+.++. -...++.++|..||++..-+-.... +.||..
T Consensus 59 ~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~ 102 (151)
T 3f6v_A 59 TRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVT 102 (151)
T ss_dssp HHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4788999987 4779999999999999887765544 568875
No 144
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=59.37 E-value=19 Score=21.65 Aligned_cols=39 Identities=15% Similarity=0.165 Sum_probs=28.7
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..||++..-+-.. ..++||..
T Consensus 49 ~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~ 90 (168)
T 2nyx_A 49 RTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVGAELID 90 (168)
T ss_dssp HHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 45555654 46899999999999987665444 45679985
No 145
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=59.32 E-value=22 Score=22.07 Aligned_cols=40 Identities=8% Similarity=0.160 Sum_probs=29.2
Q ss_pred HHHHHHHHh-cccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSA-YSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~A-Y~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..|... ...++..++|..+|++..-+-.. ..++||..
T Consensus 45 ~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~ 88 (189)
T 3nqo_A 45 MTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVD 88 (189)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345555542 56899999999999987666544 45679985
No 146
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=58.98 E-value=17 Score=22.21 Aligned_cols=41 Identities=20% Similarity=0.325 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCe
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWT 43 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~ 43 (81)
+..+|+.++.+ -..++..++|..||+|+..+..... +.|.-
T Consensus 4 ~d~~il~~L~~-~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i 47 (162)
T 3i4p_A 4 LDRKILRILQE-DSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVI 47 (162)
T ss_dssp HHHHHHHHHTT-CSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHH-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCe
Confidence 34677777764 3578999999999999988876655 34654
No 147
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=58.95 E-value=7.7 Score=22.70 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=33.4
Q ss_pred cccccHHH--HHHHhCCCHHHHHHHHHhcCCeEeCCCceEeecCCCCcccCCCChhHHHHHHhHHH
Q 036949 14 YSTISTQD--TALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPSKMQCLTEYVF 77 (81)
Q Consensus 14 Y~sIs~~~--~a~~Lgls~~e~~~~~~~~GW~~d~~~~~~~p~~~~~~~~~~~~~~~l~~Lt~~v~ 77 (81)
|++|.++. +.+-++ +.+...++....||+.+.+ .+++|... +..+|+++-+.+.
T Consensus 41 yR~Ir~~N~~f~~~v~-~~~G~~e~L~a~GF~~~~~-~l~lp~~~--------~~~~l~~~~d~l~ 96 (99)
T 2ccq_A 41 YRSIRIGNTAFSTRLL-PVRGAVECLFEMGFEEGET-HLIFPKKA--------SVEQLQKIRDLIA 96 (99)
T ss_dssp GGEEETTCHHHHHHTT-TSTTHHHHHHHHTCEECSS-EEECCTTS--------CHHHHHHHHHHHH
T ss_pred cceeecCCHHHHHHhc-CCccHHHHHHHccceeCCC-eeecCCCC--------CHHHHHHHHHHHH
Confidence 67777665 333332 2334577888899998855 47776532 4567777766653
No 148
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=58.52 E-value=22 Score=20.76 Aligned_cols=40 Identities=23% Similarity=0.208 Sum_probs=29.3
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeEe
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTLD 45 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d 45 (81)
.++..+.. ...++..++|..+|++..-+-.. ..++||..-
T Consensus 45 ~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 45 AMINVIYS-TPGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 45556654 36799999999999987766554 446799864
No 149
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=58.18 E-value=32 Score=21.71 Aligned_cols=38 Identities=5% Similarity=0.144 Sum_probs=27.0
Q ss_pred cccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceEee
Q 036949 16 TISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRMLTV 53 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~~p 53 (81)
.++..++|.|||++.+-+-.. ..+.||---..+.+.+.
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~i~i~ 217 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVY 217 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEES
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCCEEEEe
Confidence 568899999999988765444 44679975445555554
No 150
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=58.15 E-value=34 Score=21.94 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=24.6
Q ss_pred cccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCCceE
Q 036949 16 TISTQDTALFLGMNEDDAAYY---VQQQGWTLDPASRML 51 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~~~~ 51 (81)
.++..++|.|||++.+-+-.. ..+.|+---..+.+.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~~i~ 255 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIV 255 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 567899999999988765444 446798654344443
No 151
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=58.13 E-value=20 Score=19.19 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=29.0
Q ss_pred cHHHHHHHhCCCHHHHHHHHHh-cCCeEe--CCCceEeec
Q 036949 18 STQDTALFLGMNEDDAAYYVQQ-QGWTLD--PASRMLTVK 54 (81)
Q Consensus 18 s~~~~a~~Lgls~~e~~~~~~~-~GW~~d--~~~~~~~p~ 54 (81)
+...+|.-||++..-+-.++.. +|-.+. .+|..+.+.
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir~~r~v~Lt~~~~G~~~~~~ 54 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIHAGRKIFLTINADGSVYAEE 54 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHTCEEEEEECTTSCEEEEE
T ss_pred CHHHHHHHhCCCHHHHHHHHHhCCCceeEecCCcceeHHh
Confidence 8899999999999999888774 456665 677776654
No 152
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=57.87 E-value=12 Score=20.49 Aligned_cols=27 Identities=7% Similarity=0.055 Sum_probs=22.9
Q ss_pred HHhcccccHHHHHHHhCCCHHHHHHHH
Q 036949 11 MSAYSTISTQDTALFLGMNEDDAAYYV 37 (81)
Q Consensus 11 ~~AY~sIs~~~~a~~Lgls~~e~~~~~ 37 (81)
..-|=+.+++++|..||++.+++.+..
T Consensus 43 ~~GYL~~~l~eia~~l~~~~~eve~vL 69 (76)
T 2k9l_A 43 EKGFLSKSVEEISDVLRCSVEELEKVR 69 (76)
T ss_dssp TSSTTCCCHHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCCCHHHHHHHH
Confidence 456889999999999999998887654
No 153
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=57.87 E-value=12 Score=22.07 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=19.8
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+..+-|..++++++|+-.|+|.
T Consensus 21 ~~~~G~~~~ti~~Ia~~agvs~ 42 (194)
T 2g7s_A 21 IIRGGYNSFSYADISQVVGIRN 42 (194)
T ss_dssp HHHHCGGGCCHHHHHHHHCCCH
T ss_pred HHHcCcccCCHHHHHHHhCCCc
Confidence 5678899999999999999987
No 154
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=57.79 E-value=24 Score=20.18 Aligned_cols=40 Identities=10% Similarity=0.120 Sum_probs=28.6
Q ss_pred HHHHHHHHhc-ccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAY-STISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY-~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+...= ..++..++|..+|++..-+-.. ..++||..
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 78 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIY 78 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 3455554432 4899999999999987766555 44679985
No 155
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=57.78 E-value=20 Score=19.16 Aligned_cols=37 Identities=8% Similarity=0.146 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcc---cccHHHHHHHh-CCCHHHHHHHHHh
Q 036949 3 TKRMFQLLMSAYS---TISTQDTALFL-GMNEDDAAYYVQQ 39 (81)
Q Consensus 3 R~~~~~li~~AY~---sIs~~~~a~~L-gls~~e~~~~~~~ 39 (81)
|.+|++...+-+. .+.++.+|... |+|+.|+...|.+
T Consensus 8 R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~e 48 (78)
T 3kw6_A 8 RLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTE 48 (78)
T ss_dssp HHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHH
Confidence 7788887777663 67788877755 6899999888764
No 156
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=57.67 E-value=14 Score=19.68 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=16.1
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHh
Q 036949 17 ISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~~~ 39 (81)
+++.++|..+|+|..-+-.+...
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 35677888888887776666653
No 157
>2ww2_A Mannosidase, alpha-1,2-mannosidase; hydrolase, glycoside hydrolase family 92, BT2199; HET: SWA; 1.90A {Bacteroides thetaiotaomicron} PDB: 2wvy_A*
Probab=57.65 E-value=13 Score=29.05 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH-hcCCe--EeCCCceEeecCCC
Q 036949 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ-QQGWT--LDPASRMLTVKKQP 57 (81)
Q Consensus 4 ~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~-~~GW~--~d~~~~~~~p~~~~ 57 (81)
+-+.+-++-||.-=.+.++|+.||= .++...|.+ +++|+ +|++..++.|+...
T Consensus 443 ~svS~TLEYay~D~~iaq~Ak~LGk-~~d~~~y~~Rs~ny~n~fd~~tgf~rpr~~d 498 (737)
T 2ww2_A 443 EATAKTLEYAYADWCIARFAESLGK-QDIADQYYQKAPNYRNLYYPEHGFMWTKDAK 498 (737)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHTTGGGGGGGEETTTTEECCBCTT
T ss_pred CchhHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhHHHhCCCccCcccccCCC
Confidence 4567788999999999999999994 566777777 56995 89998888888553
No 158
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=57.45 E-value=26 Score=22.15 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcc------cccHHHHHHHhCCCHHHHHHHHH
Q 036949 3 TKRMFQLLMSAYS------TISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 3 R~~~~~li~~AY~------sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
+..+..++.+-|. .+++.++|..||+|..-+-.+..
T Consensus 29 K~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 29 IQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp HHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3444445556655 58999999999999877766544
No 159
>2ns0_A Hypothetical protein; rhodococcus structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} SCOP: a.4.5.76
Probab=57.45 E-value=12 Score=21.56 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHhc--ccccHHHHHHHhC
Q 036949 2 YTKRMFQLLMSAY--STISTQDTALFLG 27 (81)
Q Consensus 2 ~R~~~~~li~~AY--~sIs~~~~a~~Lg 27 (81)
+++-|+.++++.= .||+.+++|+.||
T Consensus 8 le~~Il~ll~~R~~~kTicPSEvARal~ 35 (85)
T 2ns0_A 8 LEECIRALLDARADSASICPSDVARAVA 35 (85)
T ss_dssp HHHHHHHHHHHSCTTCCBCHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHhC
Confidence 5677888888764 4999999999997
No 160
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=57.33 E-value=24 Score=20.03 Aligned_cols=39 Identities=10% Similarity=0.056 Sum_probs=28.7
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~ 44 (81)
+++..+.. ...++..++|..+|++..-+-..+ .++||..
T Consensus 42 ~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~ 83 (140)
T 2nnn_A 42 AALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQ 83 (140)
T ss_dssp HHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45566643 358999999999999877665554 4679985
No 161
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=57.26 E-value=24 Score=20.17 Aligned_cols=20 Identities=10% Similarity=-0.072 Sum_probs=14.1
Q ss_pred cccccHHHHHHHhCCCHHHH
Q 036949 14 YSTISTQDTALFLGMNEDDA 33 (81)
Q Consensus 14 Y~sIs~~~~a~~Lgls~~e~ 33 (81)
+.-.+..++|..||+|..-+
T Consensus 47 ~~G~s~~EIA~~L~iS~~TV 66 (99)
T 1p4w_A 47 AEGFLVTEIAKKLNRSIKTI 66 (99)
T ss_dssp HHTCCHHHHHHHHTSCHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHH
Confidence 45667788888888876443
No 162
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=57.21 E-value=11 Score=22.39 Aligned_cols=22 Identities=9% Similarity=0.250 Sum_probs=19.6
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 15 ~~~~G~~~~ti~~Ia~~agvs~ 36 (194)
T 3bqz_B 15 FIKNGYNATTTGEIVKLSESSK 36 (194)
T ss_dssp HHHHTTTTCCHHHHHHHTTCCH
T ss_pred HHHcCCccCCHHHHHHHhCCCc
Confidence 4468899999999999999987
No 163
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=57.10 E-value=11 Score=24.62 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHHHhc-ccccHHHHHHHhCCCHHHHHHHHHhc-CCeE
Q 036949 4 KRMFQLLMSAY-STISTQDTALFLGMNEDDAAYYVQQQ-GWTL 44 (81)
Q Consensus 4 ~~~~~li~~AY-~sIs~~~~a~~Lgls~~e~~~~~~~~-GW~~ 44 (81)
+++.+.|..-| ..++++++|+.+|+|..-+.....+. |-++
T Consensus 6 ~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~g~s~ 48 (292)
T 1d5y_A 6 RDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAI 48 (292)
T ss_dssp HHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 45677777776 56999999999999998887776654 6443
No 164
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=56.91 E-value=11 Score=22.35 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=19.3
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 22 ~~~~G~~~~tv~~Ia~~agvs~ 43 (195)
T 3ppb_A 22 FVSQGFHGTSTATIAREAGVAT 43 (195)
T ss_dssp HHHTCSTTSCHHHHHHHHTCCH
T ss_pred HHhcCcccCCHHHHHHHhCCCh
Confidence 4566899999999999999977
No 165
>2phc_B Uncharacterized protein PH0987; structural genomics, southeas collaboratory for structural genomics, secsg, PSI, protein initiative; 2.29A {Pyrococcus horikoshii} SCOP: b.62.1.4 d.74.5.1
Probab=56.86 E-value=11 Score=25.21 Aligned_cols=28 Identities=14% Similarity=0.144 Sum_probs=25.6
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHhcCCeE
Q 036949 17 ISTQDTALFLGMNEDDAAYYVQQQGWTL 44 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~~~~GW~~ 44 (81)
-.++.+|+..|||.+|+++.-.+.-|.+
T Consensus 98 pDL~~vA~~~gLs~~evi~~H~~~~y~V 125 (225)
T 2phc_B 98 PDIEFVAQYNGLSVDDVIEIHSKPLYRV 125 (225)
T ss_dssp TTHHHHHHHHTCCHHHHHHHHHSSCEEE
T ss_pred CCHHHHHHHhCcCHHHHHHHhhCCCeEE
Confidence 4788999999999999999999988887
No 166
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=56.79 E-value=12 Score=24.29 Aligned_cols=27 Identities=11% Similarity=0.129 Sum_probs=21.6
Q ss_pred hcccccHHHHHHHhCC------CHHHHHHHHHh
Q 036949 13 AYSTISTQDTALFLGM------NEDDAAYYVQQ 39 (81)
Q Consensus 13 AY~sIs~~~~a~~Lgl------s~~e~~~~~~~ 39 (81)
.|++|++++++..|.+ +.+|++-.+.+
T Consensus 138 ~~~rI~l~~i~~~l~~~~~~~~~~~evE~ila~ 170 (203)
T 3t5x_A 138 KTHQLSLDAFLVALKFMQVEDVDIDEVQCILAN 170 (203)
T ss_dssp CCSEEEHHHHHHHHHHTTCTTCCHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 6999999999999964 77887666553
No 167
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=56.75 E-value=12 Score=22.37 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=31.3
Q ss_pred HHHHHHHHHhccc---ccHHHHHHHhCCCHHHHHHHHHhcCCeEeCC
Q 036949 4 KRMFQLLMSAYST---ISTQDTALFLGMNEDDAAYYVQQQGWTLDPA 47 (81)
Q Consensus 4 ~~~~~li~~AY~s---Is~~~~a~~Lgls~~e~~~~~~~~GW~~d~~ 47 (81)
-|+++.|...=.. =.+..++.|.|+++++++....+.+|-+..+
T Consensus 25 ~rLAq~i~~~~d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~A 71 (104)
T 1wj7_A 25 IRLAQMISDHNDADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRA 71 (104)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCCcccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHH
Confidence 3566666544220 1356689999999999999999999987543
No 168
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=56.54 E-value=9.3 Score=21.90 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcccc--cHHHHHHHhCCCHHHHHHHHH
Q 036949 3 TKRMFQLLMSAYSTI--STQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 3 R~~~~~li~~AY~sI--s~~~~a~~Lgls~~e~~~~~~ 38 (81)
|+++.+++. + ..+ .-..+|+-|||+..++..|..
T Consensus 5 r~~v~~ll~-~-~~~G~dW~~LA~~Lg~~~~~I~~i~~ 40 (91)
T 2ib1_A 5 QEEVQRLLM-M-GEPAKGWQELAGHLGYQAEAVETMAC 40 (91)
T ss_dssp HHTTHHHHT-T-TCCSSTHHHHHHHHTCCHHHHHHHTT
T ss_pred HHHHHHHhc-C-CCCCccHHHHHHHcCCCHHHHHHHHh
Confidence 677777777 4 332 458899999999999987744
No 169
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=56.25 E-value=21 Score=19.01 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhc-ccccHHHHHHHh-----CCCHHHH---HHHHHhcCCeE
Q 036949 3 TKRMFQLLMSAY-STISTQDTALFL-----GMNEDDA---AYYVQQQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~AY-~sIs~~~~a~~L-----gls~~e~---~~~~~~~GW~~ 44 (81)
|..|+.++...- ..++..+++..| ++|..-+ .+...+.|+-.
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 678889888765 689999999999 8987664 44455678864
No 170
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=55.62 E-value=24 Score=20.92 Aligned_cols=39 Identities=15% Similarity=0.269 Sum_probs=28.5
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..+|++..-+-.. ..++||..
T Consensus 57 ~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 98 (161)
T 3e6m_A 57 RLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAA 98 (161)
T ss_dssp HHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34555544 36899999999999987665544 45679986
No 171
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=55.54 E-value=25 Score=20.26 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 4 ~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
-+++.++.. .. ++..++|..+|++..-+-.. ..++||..
T Consensus 41 ~~iL~~l~~-~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~ 82 (146)
T 3tgn_A 41 EHILMLLSE-ES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLE 82 (146)
T ss_dssp HHHHHHHTT-CC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHh-CC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeE
Confidence 456666654 35 99999999999987665554 45679985
No 172
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=55.41 E-value=25 Score=22.54 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcccccHHHHHHHhCCCHHHH
Q 036949 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDA 33 (81)
Q Consensus 4 ~~~~~li~~AY~sIs~~~~a~~Lgls~~e~ 33 (81)
+.|+.++.+ ...++.+++|..||.|+.-+
T Consensus 15 ~~i~~~l~~-~~~~~~~~la~~~~vs~~Ti 43 (190)
T 4a0z_A 15 EAIRQQIDS-NPFITDHELSDLFQVSIQTI 43 (190)
T ss_dssp HHHHHHHHH-CTTCCHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHH-CCCEeHHHHHHHHCCCHHHH
Confidence 455555544 78999999999999998654
No 173
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=54.82 E-value=5.1 Score=19.92 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=15.1
Q ss_pred ChhHHHHHHhHHHhhcC
Q 036949 65 DPSKMQCLTEYVFHLEH 81 (81)
Q Consensus 65 ~~~~l~~Lt~~v~~LE~ 81 (81)
+.++++.|++=|.+|||
T Consensus 5 s~eeF~~L~rRVlqlE~ 21 (39)
T 3te3_A 5 SGEEFYMLTRRVLQLET 21 (39)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 67899999999999985
No 174
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=54.80 E-value=15 Score=21.15 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=16.3
Q ss_pred CCHHHHHHHHHhc-CCeEeCC
Q 036949 28 MNEDDAAYYVQQQ-GWTLDPA 47 (81)
Q Consensus 28 ls~~e~~~~~~~~-GW~~d~~ 47 (81)
|+++|+.+...+. ||+++.+
T Consensus 6 Ls~~ei~~~L~~l~gW~~~~~ 26 (97)
T 3jst_A 6 LTESEMNEALRALDGWQKVDG 26 (97)
T ss_dssp CCHHHHHHHHHTSTTCEECTT
T ss_pred CCHHHHHHHhhcCCCCeEeCC
Confidence 5888998888876 9999744
No 175
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=54.64 E-value=22 Score=21.18 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=23.1
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|..++++++|+-.|+|.
T Consensus 5 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk 37 (190)
T 3vpr_A 5 RDRILEEAAKLFTEKGYEATSVQDLAQALGLSK 37 (190)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCH
Confidence 555555 5678899999999999999976
No 176
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=54.61 E-value=26 Score=19.57 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=18.8
Q ss_pred cHHHHHHHhCCCHHHHHHHHHhcC
Q 036949 18 STQDTALFLGMNEDDAAYYVQQQG 41 (81)
Q Consensus 18 s~~~~a~~Lgls~~e~~~~~~~~G 41 (81)
+...+|+.||++..-+-.-.++.|
T Consensus 56 N~s~AA~~LGISR~TLyrKLkk~g 79 (81)
T 1umq_A 56 NVSETARRLNMHRRTLQRILAKRS 79 (81)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTSS
T ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Confidence 467899999999988876666544
No 177
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=54.56 E-value=15 Score=21.66 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.1
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+..+-|..++++++|+-.|+|.
T Consensus 23 ~~~~G~~~~ti~~Ia~~agvs~ 44 (196)
T 3col_A 23 ILAEGPAGVSTTKVAKRVGIAQ 44 (196)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCH
T ss_pred HHhcCcccCCHHHHHHHhCCcH
Confidence 4567899999999999999876
No 178
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=54.52 E-value=28 Score=19.82 Aligned_cols=39 Identities=10% Similarity=0.211 Sum_probs=28.4
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..+|++..-+-.. ..++||..
T Consensus 38 ~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~ 79 (138)
T 1jgs_A 38 KVLCSIRC-AACITPVELKKVLSVDLGALTRMLDRLVCKGWVE 79 (138)
T ss_dssp HHHHHHHH-HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh-cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 34555543 46789999999999987776555 44679985
No 179
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=54.42 E-value=14 Score=21.46 Aligned_cols=38 Identities=0% Similarity=0.086 Sum_probs=27.5
Q ss_pred HHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 6 MFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 6 ~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
++..+.. ...++..++|..+|++..-+-.. ..++||..
T Consensus 41 vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 81 (140)
T 3hsr_A 41 VLMAIEN-DEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVV 81 (140)
T ss_dssp HHHHSCT-TCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeE
Confidence 3444433 56899999999999987766554 45679985
No 180
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=54.28 E-value=16 Score=21.57 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..++++++|+-.|+|.
T Consensus 20 ~~~~G~~~~t~~~IA~~agvs~ 41 (186)
T 2jj7_A 20 FGERGYEGTSIQEIAKEAKVNV 41 (186)
T ss_dssp HHHHHHHHCCHHHHHHHHTSCH
T ss_pred HHHcCCccCCHHHHHHHhCCCh
Confidence 4567899999999999999976
No 181
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=54.13 E-value=30 Score=20.15 Aligned_cols=42 Identities=7% Similarity=0.078 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhccc-ccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 3 TKRMFQLLMSAYST-ISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~AY~s-Is~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
+.+++.++...-.. ++..++|..||++..-+-.. ..++|+..
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 55678888776555 99999999999987776444 45679975
No 182
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=53.77 E-value=15 Score=21.90 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+..+-|..++++++|+-.|+|.
T Consensus 30 f~~~G~~~~ti~~Ia~~agvs~ 51 (208)
T 3cwr_A 30 LSSGGAAAMTMEGVASEAGIAK 51 (208)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH
T ss_pred HHHcCHHhccHHHHHHHhCCCH
Confidence 4467899999999999999987
No 183
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=53.73 E-value=16 Score=19.93 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=18.1
Q ss_pred cHHHHHHHhCCCHHHHHHHHH
Q 036949 18 STQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 18 s~~~~a~~Lgls~~e~~~~~~ 38 (81)
+.+.+|.+||+|..-+-++..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHh
Confidence 388999999999999988765
No 184
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=53.58 E-value=22 Score=21.22 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.6
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
...+-|..++++++|+-.|+|.
T Consensus 29 f~~~G~~~~t~~~Ia~~agvs~ 50 (213)
T 2qtq_A 29 MREGDVVDISLSELSLRSGLNS 50 (213)
T ss_dssp HHHHTSSCCCHHHHHHHHCCCH
T ss_pred HHHcCcccccHHHHHHHhCCCh
Confidence 4567899999999999999987
No 185
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=53.02 E-value=15 Score=21.98 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=22.8
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|...+++++|+-.|+|.
T Consensus 9 Re~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~ 41 (178)
T 4hku_A 9 QEIILNMAEKIIYEKGMEKTTLYDIASNLNVTH 41 (178)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHHHHhCcccccHHHHHHHhCcCH
Confidence 666665 5577899999999999999865
No 186
>3njc_A YSLB protein; NESG, PSI, structural genomics, protein structure initiative northeast structural genomics consortium, unknown function; 1.69A {Bacillus subtilis subsp}
Probab=52.79 E-value=7.5 Score=24.95 Aligned_cols=42 Identities=14% Similarity=0.342 Sum_probs=32.5
Q ss_pred hHHHHH-HHHHHhcccccH---HHHHHHhCC-CHHHHHHHHHhcCCe
Q 036949 2 YTKRMF-QLLMSAYSTIST---QDTALFLGM-NEDDAAYYVQQQGWT 43 (81)
Q Consensus 2 ~R~~~~-~li~~AY~sIs~---~~~a~~Lgl-s~~e~~~~~~~~GW~ 43 (81)
+|+.++ .++++-+..|-- .++|+-+.+ +.+|+..|+.+-||-
T Consensus 35 lRd~lLp~iLG~d~~~ILYWAGK~LARk~pl~s~edli~FF~~agwG 81 (158)
T 3njc_A 35 IREIVLPDMLGQDYSSMMYWAGKHLARKFPLESWEEFPAFFEEAGWG 81 (158)
T ss_dssp HHTTHHHHHHGGGHHHHHHHHHHHHHHHSCCSSGGGHHHHHHHTTSC
T ss_pred HHHhhHHHHhCCCCcceeeeccHHHHHhCCCCCHHHHHHHHHHhCCc
Confidence 455445 566666666654 469999999 899999999999995
No 187
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=52.67 E-value=28 Score=20.61 Aligned_cols=30 Identities=7% Similarity=0.057 Sum_probs=23.5
Q ss_pred ccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 15 STISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
..++..++|..||++..-+-.. ..++||..
T Consensus 50 ~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~ 82 (147)
T 4b8x_A 50 GELPMSKIGERLMVHPTSVTNTVDRLVRSGLVA 82 (147)
T ss_dssp GEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEE
Confidence 4599999999999987665444 45689985
No 188
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=52.65 E-value=12 Score=18.76 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=14.2
Q ss_pred cccccHHHHHHHhCCCHHHHH
Q 036949 14 YSTISTQDTALFLGMNEDDAA 34 (81)
Q Consensus 14 Y~sIs~~~~a~~Lgls~~e~~ 34 (81)
+.-.+..++|..||+|..-+.
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~ 31 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVE 31 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHH
Confidence 445577788888888775443
No 189
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.59 E-value=13 Score=20.16 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=24.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCeEeCC
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQGWTLDPA 47 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~GW~~d~~ 47 (81)
+..++...|.+++.+..|...-+|.++..
T Consensus 21 i~qF~~iTg~~~~~A~~~Le~~~WdLe~A 49 (66)
T 2dzl_A 21 INQFVLAAGCAADQAKQLLQAAHWQFETA 49 (66)
T ss_dssp HHHHHHHHCCCHHHHHHHHHTTTTCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCHHHH
Confidence 56788889999999999999999998754
No 190
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=52.54 E-value=35 Score=20.45 Aligned_cols=49 Identities=12% Similarity=-0.005 Sum_probs=33.7
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeEeC--CCceEeec
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTLDP--ASRMLTVK 54 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~d~--~~~~~~p~ 54 (81)
+++..++..+.. +..++|..+|+|+.-+.+... +.|+.... .|.+..-+
T Consensus 13 ~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG~GGy~Lar 66 (145)
T 1xd7_A 13 HILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVPGASLKK 66 (145)
T ss_dssp HHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSSSSSCEESS
T ss_pred HHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecCCCCceecC
Confidence 455566666666 999999999999988777655 45886532 34454333
No 191
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=52.30 E-value=17 Score=21.42 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=19.7
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 23 ~~~~G~~~~t~~~IA~~agvs~ 44 (191)
T 3on4_A 23 IQKDGYNAFSFKDIATAINIKT 44 (191)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH
T ss_pred HHHhCcccCCHHHHHHHhCCCc
Confidence 4578999999999999999987
No 192
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=52.07 E-value=16 Score=21.54 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=18.3
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 19 ~~~~G~~~~t~~~Ia~~agvs~ 40 (191)
T 1sgm_A 19 SQLQGYHATGLNQIVKESGAPK 40 (191)
T ss_dssp HHHHCTTTCCHHHHHHHHCCCS
T ss_pred HHHcCccccCHHHHHHHHCCCc
Confidence 4567899999999999888743
No 193
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=51.99 E-value=34 Score=20.11 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=28.6
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++.++.. ...++..++|..||++..-+-.. ..++||..
T Consensus 56 ~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 97 (162)
T 3cjn_A 56 RALAILSA-KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVR 97 (162)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 45555654 46799999999999987665544 44679985
No 194
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=51.97 E-value=24 Score=19.62 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=16.4
Q ss_pred cHHHHHHHhCCCHHHHHHHHHh
Q 036949 18 STQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 18 s~~~~a~~Lgls~~e~~~~~~~ 39 (81)
+...+|+.||++..-+-....+
T Consensus 66 n~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 66 HKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp CTTHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4567999999998877655544
No 195
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=51.94 E-value=24 Score=21.46 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|..++++++|+-.|+|.
T Consensus 10 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~ 42 (202)
T 2d6y_A 10 KARIFEAAVAEFARHGIAGARIDRIAAEARANK 42 (202)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCH
Confidence 455554 4568899999999999999977
No 196
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.94 E-value=14 Score=19.63 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=24.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCeEeCC
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQGWTLDPA 47 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~GW~~d~~ 47 (81)
+..+....|.+++.+..|...-+|.++..
T Consensus 19 i~qF~~iTg~~~~~A~~~Le~~~WnLe~A 47 (62)
T 2dal_A 19 IQQFTTITGASESVGKHMLEACNNNLEMA 47 (62)
T ss_dssp HHHHHHHTCCCHHHHHHHHHTTTSCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCCHHHH
Confidence 56788888999999999999899998643
No 197
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=51.74 E-value=33 Score=19.94 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=29.1
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..||++..-+... ..++||..
T Consensus 51 ~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 51 LVMLVLWE-TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh-CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 45556654 57899999999999987665544 45679986
No 198
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=51.47 E-value=33 Score=19.73 Aligned_cols=37 Identities=8% Similarity=0.125 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
+.++.-..+--...+++.++|+-.|++.+++..+...
T Consensus 36 ~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~ 72 (95)
T 2jrt_A 36 SRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSA 72 (95)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 3455556667778999999999999999999988764
No 199
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=51.33 E-value=33 Score=19.82 Aligned_cols=39 Identities=15% Similarity=0.097 Sum_probs=28.4
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
+++..+.. ...++..++|..+|++..-+-.. ..++||..
T Consensus 44 ~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~ 85 (152)
T 3bj6_A 44 AILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQRAGLIE 85 (152)
T ss_dssp HHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCee
Confidence 45555543 46899999999999987665544 44679985
No 200
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=51.29 E-value=19 Score=21.35 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=22.9
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ +.++-|..++++++|+-.|+|.
T Consensus 10 r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~ 42 (206)
T 3dew_A 10 RSRLMEVATELFAQKGFYGVSIRELAQAAGASI 42 (206)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCH
Confidence 455554 4678899999999999999987
No 201
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=51.24 E-value=32 Score=22.42 Aligned_cols=41 Identities=17% Similarity=0.391 Sum_probs=30.7
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeEe
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTLD 45 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~d 45 (81)
+|+.++...-..+++.++|+.+|++..-+-.+. .+.||-.-
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~ 55 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLR 55 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 466677665446999999999999887765554 46799864
No 202
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=51.22 E-value=16 Score=21.91 Aligned_cols=22 Identities=9% Similarity=0.169 Sum_probs=19.7
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 31 ~~~~G~~~~s~~~Ia~~agvs~ 52 (212)
T 1pb6_A 31 FSQFGFHGTRLEQIAELAGVSK 52 (212)
T ss_dssp HHHHCTTTCCHHHHHHHTTSCH
T ss_pred HHHcCcchhhHHHHHHHHCCCh
Confidence 5677899999999999999976
No 203
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=51.22 E-value=13 Score=22.15 Aligned_cols=22 Identities=9% Similarity=-0.037 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..+++.++|+-.|+|.
T Consensus 30 ~~~~G~~~~s~~~Ia~~agvs~ 51 (206)
T 3kz9_A 30 FARRGIGRGGHADIAEIAQVSV 51 (206)
T ss_dssp HHHSCCSSCCHHHHHHHHTSCH
T ss_pred HHhcCcccccHHHHHHHhCCCH
Confidence 4567899999999999999977
No 204
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=51.08 E-value=17 Score=21.82 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=19.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
...+-|..++++++|+-.|+|.
T Consensus 25 f~e~G~~~~t~~~IA~~agvsk 46 (192)
T 2fq4_A 25 LLESGFKAVTVDKIAERAKVSK 46 (192)
T ss_dssp HHHHCTTTCCHHHHHHHHTCCH
T ss_pred HHHcCcccccHHHHHHHcCCCH
Confidence 4668999999999999999876
No 205
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=50.75 E-value=32 Score=19.48 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHH---HHHHHHhcCC
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDD---AAYYVQQQGW 42 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e---~~~~~~~~GW 42 (81)
+.+.+++...+.-..+..+++-.+..+..+. +-+|..+.||
T Consensus 44 ~K~~Li~E~~k~g~~lkk~da~~~~kiD~~K~~~iydf~~~~Gw 87 (88)
T 2elj_A 44 LKEVMFRELLKTGGNLSKSACRELLNIDPIKANRIYDFFQSQNW 87 (88)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHcccHHHHHHHHHHHHHcCC
Confidence 3456666555554558899999999997654 5677888999
No 206
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=50.73 E-value=17 Score=21.74 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=26.0
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCHHHHHHH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNEDDAAYY 36 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~~e~~~~ 36 (81)
|++|++ +.++-|..++++++|+-.|+|..-+-.+
T Consensus 9 r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 47 (195)
T 2dg7_A 9 EQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRY 47 (195)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHH
Confidence 455554 4567899999999999999998666444
No 207
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=50.59 E-value=33 Score=19.52 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
..++|++.+..|=.=++..++|..+|++..++.+...+
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~ 57 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYR 57 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 36789999999999999999999999999888777653
No 208
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=50.54 E-value=29 Score=18.94 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
++.+++.++. ...++.++|..+|++..-+..+..+
T Consensus 27 ~k~~~v~~~~---~g~s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 27 DKIHAIQRIH---DGESKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp HHHHHHHHHH---HTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHH---CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3455565553 3578999999999999888777653
No 209
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=50.47 E-value=21 Score=21.12 Aligned_cols=28 Identities=11% Similarity=0.311 Sum_probs=22.9
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|...|++++|+-.|+|.
T Consensus 4 r~~Il~aA~~lf~~~Gy~~~s~~~Ia~~agvsk 36 (179)
T 2eh3_A 4 KERILEVSKELFFEKGYQGTSVEEIVKRANLSK 36 (179)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHcCCccCCHHHHHHHhCCCc
Confidence 555554 4678899999999999999976
No 210
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=50.39 E-value=32 Score=22.47 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=18.2
Q ss_pred cccccHHHHHHHhCCCHHHHHH
Q 036949 14 YSTISTQDTALFLGMNEDDAAY 35 (81)
Q Consensus 14 Y~sIs~~~~a~~Lgls~~e~~~ 35 (81)
|.-.+..++|..||+|..-+..
T Consensus 210 ~~G~s~~EIA~~L~iS~~TVk~ 231 (258)
T 3clo_A 210 RKGLSSKEIAATLYISVNTVNR 231 (258)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHH
Confidence 7889999999999998865533
No 211
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=50.34 E-value=30 Score=20.07 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=24.0
Q ss_pred HHHHHHHHhc-ccccHHHHHHHhCCCHHH---HHHHHHhcCCeE
Q 036949 5 RMFQLLMSAY-STISTQDTALFLGMNEDD---AAYYVQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY-~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~ 44 (81)
.++..+...- ..++..++|..+|++..- +.+-..++||..
T Consensus 45 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 88 (148)
T 3jw4_A 45 RMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIE 88 (148)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 4555565532 689999999999996544 455566789985
No 212
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=50.32 E-value=17 Score=21.79 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=19.6
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..+++.++|+-.|+|.
T Consensus 27 ~~~~G~~~~ti~~Ia~~agvs~ 48 (220)
T 3lhq_A 27 FSQQGVSATSLAEIANAAGVTR 48 (220)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHcCcccCCHHHHHHHhCCCc
Confidence 4578999999999999999987
No 213
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=50.26 E-value=26 Score=21.23 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=19.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
...+-|..++++++|+-.|+|.
T Consensus 28 f~~~G~~~~s~~~IA~~agvs~ 49 (221)
T 3c2b_A 28 LVEGGEKALTTSGLARAANCSK 49 (221)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH
T ss_pred HHhCCcccCCHHHHHHHhCCCH
Confidence 4567899999999999999977
No 214
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=50.18 E-value=21 Score=21.36 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=19.6
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 21 ~~~~G~~~~t~~~IA~~agvs~ 42 (195)
T 3frq_A 21 LKRCGPIEFTLSGVAKEVGLSR 42 (195)
T ss_dssp HHHHHHHHCCHHHHHHHHTCCH
T ss_pred HHhhCcccCCHHHHHHHhCCCH
Confidence 4577899999999999999977
No 215
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=50.08 E-value=34 Score=19.57 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=28.8
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..||++..-+-.. ..++||..
T Consensus 33 ~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~ 74 (144)
T 1lj9_A 33 LYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIY 74 (144)
T ss_dssp HHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 45555654 36799999999999987766554 44679985
No 216
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=49.99 E-value=16 Score=18.44 Aligned_cols=26 Identities=4% Similarity=0.005 Sum_probs=19.1
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCeEeC
Q 036949 20 QDTALFLGMNEDDAAYYVQQQGWTLDP 46 (81)
Q Consensus 20 ~~~a~~Lgls~~e~~~~~~~~GW~~d~ 46 (81)
..+..| |++.+++......-||-++.
T Consensus 13 ~~L~~M-GF~~~~a~~AL~~~~~n~e~ 38 (49)
T 1ify_A 13 TEIMSM-GYERERVVAALRASYNNPHR 38 (49)
T ss_dssp HHHHHT-TCCHHHHHHHHHTTTSCSHH
T ss_pred HHHHHc-CCCHHHHHHHHHHhCCCHHH
Confidence 445444 88999999888888886653
No 217
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=49.97 E-value=31 Score=23.79 Aligned_cols=36 Identities=6% Similarity=0.139 Sum_probs=28.6
Q ss_pred HHHHHHHHhc-ccccHHHHHHHhCCCHHHHHHHHHhc
Q 036949 5 RMFQLLMSAY-STISTQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 5 ~~~~li~~AY-~sIs~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
++.+.|..-| ..++++++|..+|+|..-+...+++.
T Consensus 309 ~~~~~i~~~~~~~~~~~~~a~~~~~s~~~l~r~f~~~ 345 (412)
T 4fe7_A 309 QAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEE 345 (412)
T ss_dssp HHHHHHHHHGGGTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4556666665 57999999999999998887777654
No 218
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=49.87 E-value=31 Score=19.03 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhc---ccccHHHHHHH-hCCCHHHHHHHHHh
Q 036949 3 TKRMFQLLMSAY---STISTQDTALF-LGMNEDDAAYYVQQ 39 (81)
Q Consensus 3 R~~~~~li~~AY---~sIs~~~~a~~-Lgls~~e~~~~~~~ 39 (81)
|.+|++...+-. ..+.++.+|.. =|+|+.|+...|.+
T Consensus 6 R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~e 46 (88)
T 3vlf_B 6 RANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTE 46 (88)
T ss_dssp HHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHH
Confidence 778888766544 35778888887 57899999888775
No 219
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=49.80 E-value=32 Score=19.15 Aligned_cols=35 Identities=6% Similarity=0.039 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
+|.+++.++. ...+..++|..||+|..-+..+...
T Consensus 22 ~r~~i~~~~~---~g~s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 22 IRLKIVEMAA---DGIRPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp HHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4667777764 4578899999999998888777653
No 220
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=49.76 E-value=19 Score=21.78 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=22.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHhcCCe
Q 036949 17 ISTQDTALFLGMNEDDAAYYVQQQGWT 43 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~~~~GW~ 43 (81)
-|..+||++||++..-+...|..-.|.
T Consensus 84 ~S~~eAar~lg~s~~ti~~~~~~~k~~ 110 (116)
T 1i3j_A 84 DCAADAARHFKISSGLVTYRVKSDKWN 110 (116)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHCTTCC
T ss_pred cCHHHHHHHHCCCchhHHHHHhcCCCC
Confidence 367899999999999999999865554
No 221
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=49.70 E-value=22 Score=21.03 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=19.9
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+..+-|..++++++|+-.|+|.
T Consensus 27 ~~~~G~~~~t~~~IA~~agvs~ 48 (191)
T 4aci_A 27 FAEHGYEGATVRRLEEATGKSR 48 (191)
T ss_dssp HHHHHHHHCCHHHHHHHHTCCH
T ss_pred HHHhCcccCCHHHHHHHHCCCc
Confidence 5678999999999999999987
No 222
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=49.57 E-value=36 Score=19.65 Aligned_cols=33 Identities=9% Similarity=-0.002 Sum_probs=24.8
Q ss_pred hcccccHHHHHHHhCCCHHHHHHH---HHhcCCeEe
Q 036949 13 AYSTISTQDTALFLGMNEDDAAYY---VQQQGWTLD 45 (81)
Q Consensus 13 AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d 45 (81)
.-..++..++|..||++..-+... ..+.||-.-
T Consensus 28 ~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 28 SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEe
Confidence 346789999999999987665444 446799753
No 223
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=49.52 E-value=28 Score=24.51 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeEe
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTLD 45 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~d 45 (81)
|.+|+++|-+ ...+|..++|+.+|||..-+...+ .+.|+-..
T Consensus 41 ~~~il~~l~~-~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 41 AGRVYKLIDQ-KGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHH-cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 3467888765 578999999999999886655544 35688654
No 224
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=49.13 E-value=15 Score=21.61 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..++++++|+-.|+|.
T Consensus 21 ~~~~G~~~~t~~~Ia~~agvs~ 42 (195)
T 3pas_A 21 VADHGFSATSVGKIAKAAGLSP 42 (195)
T ss_dssp HHHHHHHHCCHHHHHHHHTSCH
T ss_pred HHHcChHhcCHHHHHHHhCCCc
Confidence 4567899999999999999977
No 225
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=49.13 E-value=16 Score=22.07 Aligned_cols=22 Identities=5% Similarity=0.075 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+..+.|..+++.++|+-.|+|.
T Consensus 25 ~~~~G~~~~ti~~Ia~~agvs~ 46 (189)
T 3vp5_A 25 FQTHSFHEAKIMHIVKALDIPR 46 (189)
T ss_dssp HHHSCTTTCCHHHHHHHHTCCH
T ss_pred HHHCCcccccHHHHHHHhCCCh
Confidence 4567899999999999999986
No 226
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=49.05 E-value=33 Score=20.35 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=28.1
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHH---HHHHHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 44 (81)
.++..|.. ...++..++|..+|++..-+ .+-..++||..
T Consensus 50 ~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 91 (162)
T 3k0l_A 50 TALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLLANGWIE 91 (162)
T ss_dssp HHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeE
Confidence 34555544 46899999999999966544 45556789985
No 227
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=48.98 E-value=18 Score=21.52 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=19.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 27 ~~~~G~~~~ti~~Ia~~agvs~ 48 (203)
T 3f1b_A 27 FSDRGFHETSMDAIAAKAEISK 48 (203)
T ss_dssp HHHHCTTTCCHHHHHHHTTSCH
T ss_pred HHHcCcccccHHHHHHHhCCch
Confidence 5567899999999999999977
No 228
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=48.78 E-value=20 Score=21.79 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.6
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 36 f~~~G~~~~t~~~IA~~agvs~ 57 (214)
T 2zb9_A 36 LLTEGTAQLTFERVARVSGVSK 57 (214)
T ss_dssp HHHHCGGGCCHHHHHHHHCCCH
T ss_pred HHHhCcccCCHHHHHHHHCCCH
Confidence 5568899999999999999976
No 229
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=48.74 E-value=18 Score=19.57 Aligned_cols=52 Identities=8% Similarity=0.151 Sum_probs=32.8
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHhcCCeEeCCCceEeecCCCCcccCCC-ChhHHHHHHhHHH
Q 036949 17 ISTQDTALFLGMNEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKL-DPSKMQCLTEYVF 77 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~~~~GW~~d~~~~~~~p~~~~~~~~~~~-~~~~l~~Lt~~v~ 77 (81)
.++.++|.++|+|..-+.-|-..-| ++.|.... ...-.. +.+++..|-.+..
T Consensus 6 ~~i~e~A~~~gvs~~tlR~ye~~~g--------l~~p~r~~-~~g~R~Y~~~dl~~l~~I~~ 58 (81)
T 2jml_A 6 LRIRTIARMTGIREATLRAWERRYG--------FPRPLRSE-GNNYRVYSREEVEAVRRVAR 58 (81)
T ss_dssp EEHHHHHHTTSTTHHHHHHHHHHTC--------CSCCBSSS-CSSSCEECHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHhCC--------CCCCcCCC-CCCeeecCHHHHHHHHHHHH
Confidence 6789999999999999998755422 33343211 021222 7788887765543
No 230
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=48.72 E-value=33 Score=19.04 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=21.6
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY 36 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~ 36 (81)
+++.++ +.-.+..++|..||+|..-+...
T Consensus 34 ~vl~l~---~~g~s~~eIA~~l~is~~tV~~~ 62 (95)
T 3c57_A 34 TLLGLL---SEGLTNKQIADRMFLAEKTVKNY 62 (95)
T ss_dssp HHHHHH---HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHH---HcCCCHHHHHHHHCcCHHHHHHH
Confidence 344443 77788999999999998776544
No 231
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=48.64 E-value=19 Score=21.52 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=19.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..++++++|+-.|+|.
T Consensus 25 ~~~~G~~~~t~~~Ia~~agvs~ 46 (202)
T 3lwj_A 25 FIEKGYYNTSIRDIIALSEVGT 46 (202)
T ss_dssp HHHHCTTTCCHHHHHHHHCSCH
T ss_pred HHHcCcccCCHHHHHHHhCCCc
Confidence 4567899999999999999987
No 232
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=48.61 E-value=16 Score=21.91 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=19.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 27 ~~~~G~~~~t~~~Ia~~agvs~ 48 (215)
T 3e7q_A 27 LKRHGFQGASVRKICAEAGVSV 48 (215)
T ss_dssp HHHHHHHHCCHHHHHHHHTCCH
T ss_pred HHHcCcccCCHHHHHHHhCCCH
Confidence 4567899999999999999987
No 233
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=48.44 E-value=37 Score=21.27 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=20.6
Q ss_pred cccHHHHHHHhCCCH-HHHHHH---HHhcCCe
Q 036949 16 TISTQDTALFLGMNE-DDAAYY---VQQQGWT 43 (81)
Q Consensus 16 sIs~~~~a~~Lgls~-~e~~~~---~~~~GW~ 43 (81)
.++..++|.|||++. +-+-.. ..+.||-
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI 200 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVI 200 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCE
Confidence 577889999999987 555433 4567984
No 234
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=48.38 E-value=18 Score=19.42 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=25.2
Q ss_pred HHHHHHhccc----cc---HHHHHHHhCCCHHHHHHHHHhc
Q 036949 7 FQLLMSAYST----IS---TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 7 ~~li~~AY~s----Is---~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+++.|.. ++ ...+|.-|||++.++.-+...|
T Consensus 12 ~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNR 52 (64)
T 1x2m_A 12 NAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQR 52 (64)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3456777722 22 5679999999999999988765
No 235
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=48.34 E-value=32 Score=20.10 Aligned_cols=39 Identities=13% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..+|++..-+-.. ..++||..
T Consensus 47 ~iL~~l~~-~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~ 88 (155)
T 3cdh_A 47 RVLACLVD-NDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVT 88 (155)
T ss_dssp HHHHHHSS-CSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34455543 46799999999999987665544 44679986
No 236
>3boe_A Cadmium-specific carbonic anhydrase; marine diatom, cadmium-bound, acetate LI lyase; 1.40A {Thalassiosira weissflogii} SCOP: c.154.1.1 PDB: 3boc_A 3bob_A 3boj_A 3boh_A
Probab=48.30 E-value=12 Score=24.69 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHhcCCeE
Q 036949 28 MNEDDAAYYVQQQGWTL 44 (81)
Q Consensus 28 ls~~e~~~~~~~~GW~~ 44 (81)
|++.++....+.|||+-
T Consensus 2 ~tp~di~~aLq~RGW~A 18 (210)
T 3boe_A 2 ISPAQIAEALQGRGWDA 18 (210)
T ss_dssp CCHHHHHHHHHTTTCEE
T ss_pred CCHHHHHHHHHcCCCce
Confidence 68899999999999984
No 237
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=48.23 E-value=34 Score=19.81 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=23.8
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
..+..|+.--. -....+|+.|||+..++..+-.+
T Consensus 19 ~~~~~ia~~lg-~~Wk~LAr~Lg~s~~~I~~I~~~ 52 (111)
T 2yqf_A 19 MKMAVISEHLG-LSWAELARELQFSVEDINRIRVE 52 (111)
T ss_dssp HHHHHHHHHHT-TTHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hhHHHHHHHcCCCHHHHHHHHHH
Confidence 34455554433 47789999999999998776543
No 238
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=48.09 E-value=27 Score=24.23 Aligned_cols=42 Identities=10% Similarity=0.148 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeEe
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTLD 45 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~d 45 (81)
|.+|+++|-+ ...+|..++|+.+|||..-+...+ .+.||-..
T Consensus 18 ~~~il~~l~~-~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 18 AGAVYRLIDQ-LGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHHS-SCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHH-cCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 3467787765 578999999999999876655544 45688765
No 239
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=47.97 E-value=19 Score=20.94 Aligned_cols=21 Identities=19% Similarity=0.612 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHhc-CCeEeCCC
Q 036949 28 MNEDDAAYYVQQQ-GWTLDPAS 48 (81)
Q Consensus 28 ls~~e~~~~~~~~-GW~~d~~~ 48 (81)
|+++|+.+...+. ||++..+.
T Consensus 3 Ls~~ei~~~L~~l~gW~~~~~~ 24 (101)
T 2ebb_A 3 LTEEEVQALLEKADGWKLADER 24 (101)
T ss_dssp CCHHHHHHHHHTSTTCEEETTT
T ss_pred CCHHHHHHHhhcCCCCeECCCC
Confidence 5788888888776 99997553
No 240
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=47.97 E-value=15 Score=24.12 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=31.2
Q ss_pred HHHHHhcccccHHHHHHHhCCCHHHHHHHHHhcCCeEe
Q 036949 8 QLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLD 45 (81)
Q Consensus 8 ~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d 45 (81)
+.|..-|-..|-+++.. .|+++++++++++++|=..+
T Consensus 55 ~iMr~~yPN~s~~~l~~-t~~~~~q~Iky~~s~G~~~~ 91 (183)
T 1pxv_A 55 DIMRTLYPEVSEQDLPN-CATFPNQMIEYGKSQGRDIH 91 (183)
T ss_dssp HHHHHHSTTSCTTTGGG-CCBCHHHHHHHHHHTTCCCE
T ss_pred HHHHHHCCCCChhHHhh-cCCCHHHHHHHHHHcCcChh
Confidence 35667788999888888 89999999999999887754
No 241
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=47.90 E-value=26 Score=17.54 Aligned_cols=41 Identities=2% Similarity=0.058 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcccccHHHHHHHh-----CCCHHHHHHHHHhcCCe
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFL-----GMNEDDAAYYVQQQGWT 43 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~L-----gls~~e~~~~~~~~GW~ 43 (81)
|..++..+-..-..++.++++..| ++|..-+-....+.|..
T Consensus 6 R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 6 RHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLV 51 (64)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCCE
Confidence 444444333556789999999999 99998887777766754
No 242
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=47.76 E-value=11 Score=18.22 Aligned_cols=26 Identities=19% Similarity=0.542 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCeEe
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQGWTLD 45 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~GW~~d 45 (81)
+..+.. +||+.+++.......+|.++
T Consensus 8 i~~L~~-MGF~~~~a~~AL~~~~~n~e 33 (43)
T 2g3q_A 8 VEELSG-MGFTEEEAHNALEKCNWDLE 33 (43)
T ss_dssp HHHHHT-TTSCHHHHHHHHHHHTSCHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCcCHH
Confidence 344555 38888888777776677654
No 243
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=47.76 E-value=18 Score=21.30 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=19.9
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ +.++-|..++++++|+-.|+|.
T Consensus 14 r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~ 46 (199)
T 3on2_A 14 RRVLLARAESTLEKDGVDGLSLRQLAREAGVSH 46 (199)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHhcChhhhhHHHHHHHhCCCh
Confidence 455554 4467899999999999999866
No 244
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=47.74 E-value=38 Score=19.47 Aligned_cols=39 Identities=8% Similarity=0.040 Sum_probs=28.2
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..+|++..-+-.. ..++||..
T Consensus 35 ~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 76 (145)
T 3g3z_A 35 AVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIE 76 (145)
T ss_dssp HHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 34555543 34699999999999987666554 45679986
No 245
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=47.72 E-value=37 Score=19.28 Aligned_cols=40 Identities=8% Similarity=0.111 Sum_probs=28.4
Q ss_pred HHHHHHHHhcc-cccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYS-TISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~-sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+...-. .++..++|..+|++..-+... ..++||..
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEE
Confidence 45555555422 699999999999987665444 45679985
No 246
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=47.62 E-value=17 Score=21.88 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.6
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 26 f~~~G~~~~tv~~Ia~~agvs~ 47 (195)
T 2iu5_A 26 MQSNAYHQISVSDIMQTAKIRR 47 (195)
T ss_dssp HHHSCGGGCCHHHHHHHHTSCG
T ss_pred HHhCCCCeeCHHHHHHHhCCCH
Confidence 3467899999999999999865
No 247
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=47.60 E-value=21 Score=21.47 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 39 ~~~~G~~~~t~~~Ia~~agvs~ 60 (217)
T 3mvp_A 39 FSDKTYFNVTTNEIAKKADVSV 60 (217)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCH
T ss_pred HHHcCccccCHHHHHHHhCCCh
Confidence 4567899999999999999876
No 248
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=47.56 E-value=20 Score=21.51 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=19.6
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 27 ~~~~G~~~~ti~~IA~~agvs~ 48 (212)
T 3knw_A 27 VLRKGFVGVGLQEILKTSGVPK 48 (212)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHcCCccCCHHHHHHHhCCCh
Confidence 4578899999999999999987
No 249
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=47.51 E-value=22 Score=21.63 Aligned_cols=22 Identities=5% Similarity=0.034 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+|+.++|+-.|+|.
T Consensus 25 ~~e~G~~~~s~~~IA~~agvs~ 46 (198)
T 3cjd_A 25 IEAEGLASLRARELARQADCAV 46 (198)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCH
T ss_pred HHhCChhhcCHHHHHHHhCCCc
Confidence 4567899999999999999976
No 250
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=47.27 E-value=28 Score=20.64 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+..+-|..+++.++|+-.|+|.
T Consensus 24 f~~~G~~~~s~~~Ia~~agvs~ 45 (203)
T 3b81_A 24 FIANGYENTTLAFIINKLGISK 45 (203)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHcCcccCcHHHHHHHhCCCc
Confidence 5578899999999999999977
No 251
>1tns_A MU-transposase; DNA-binding protein; NMR {Enterobacteria phage MU} SCOP: a.6.1.7 PDB: 1tnt_A
Probab=47.14 E-value=13 Score=20.82 Aligned_cols=28 Identities=25% Similarity=0.559 Sum_probs=22.0
Q ss_pred ccHHHHHHHhCC--CHHHHHHHHHhcCCeE
Q 036949 17 ISTQDTALFLGM--NEDDAAYYVQQQGWTL 44 (81)
Q Consensus 17 Is~~~~a~~Lgl--s~~e~~~~~~~~GW~~ 44 (81)
.+..++|.+-|| +..-+...+.+.||..
T Consensus 5 ~ta~ELa~l~gLP~s~~gi~~~A~re~W~~ 34 (76)
T 1tns_A 5 VSPKELANLPGLPKTSAGVIYVAKKQGWQN 34 (76)
T ss_dssp ECHHHHTTCSSSCSSHHHHHHHHHTTCCCC
T ss_pred CcHHHHhcCCCCCCCHHHHHHHHHHcCCcc
Confidence 456778877555 7888999999999974
No 252
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=47.03 E-value=32 Score=22.37 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=30.1
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeEe
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTLD 45 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~d 45 (81)
+|+.++...=..+++.++|+.+|++..-+-.+. .+.||-.-
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~ 53 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEA 53 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 355666554446999999999999887765554 46799863
No 253
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=46.92 E-value=30 Score=19.97 Aligned_cols=39 Identities=8% Similarity=0.072 Sum_probs=27.7
Q ss_pred HHHHHHHHhc--ccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAY--STISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY--~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. . ..++..++|..||++..-+-.. ..++||..
T Consensus 41 ~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 84 (127)
T 2frh_A 41 AVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFD 84 (127)
T ss_dssp HHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34555544 3 5799999999999976665444 55679985
No 254
>2l48_A N-acetylmuramoyl-L-alanine amidase; bacillus anthracis gamma- phage endolysin, PLYG, cell WALL B domain, homodimer, ACT-type domain; NMR {Bacillus phage gamma}
Probab=46.86 E-value=40 Score=19.39 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=27.1
Q ss_pred CHHHHHHHHHhcCCeE----eCCCceEeecCCCCcccCCCChhHHHHHHhHHH
Q 036949 29 NEDDAAYYVQQQGWTL----DPASRMLTVKKQPLVTEQKLDPSKMQCLTEYVF 77 (81)
Q Consensus 29 s~~e~~~~~~~~GW~~----d~~~~~~~p~~~~~~~~~~~~~~~l~~Lt~~v~ 77 (81)
-..|+.....++||+= +++|...+-. .+.++.||+++|.++-
T Consensus 31 ~v~ev~~am~~~g~~gkii~~~dGl~y~~T-------~~~s~~eLdk~t~wLD 76 (85)
T 2l48_A 31 ETPDVMGALTSLKMTADFILQSDGLTYFIS-------KPTSDAQLKAMKEYLD 76 (85)
T ss_dssp THHHHHHHHHHTTCCEEEEECTTSCEEEEE-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCceEEEEECCCceEEEEe-------CCCCHHHHHHHHHHHh
Confidence 3578888889999982 3333332211 2227899999998763
No 255
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=46.78 E-value=23 Score=21.21 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=21.2
Q ss_pred HHHHhcccccHHHHHHHhCCCHHHH
Q 036949 9 LLMSAYSTISTQDTALFLGMNEDDA 33 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~~e~ 33 (81)
+.++-|..++++++|+-.|+|..-+
T Consensus 30 ~~~~G~~~~ti~~Ia~~agvs~~t~ 54 (207)
T 2rae_A 30 FTEQGFDATSVDEVAEASGIARRTL 54 (207)
T ss_dssp HHHHCTTTSCHHHHHHHTTSCHHHH
T ss_pred HHHcCcccCCHHHHHHHhCCCcchH
Confidence 4567899999999999999988544
No 256
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=46.72 E-value=22 Score=24.08 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCeEeCCCceEeecCCCCcccCCCChhHHHHHHhHHHhhcC
Q 036949 32 DAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPSKMQCLTEYVFHLEH 81 (81)
Q Consensus 32 e~~~~~~~~GW~~d~~~~~~~p~~~~~~~~~~~~~~~l~~Lt~~v~~LE~ 81 (81)
.+.+...+.|+++.......+|.++.. +++++.+++-+++--||.
T Consensus 184 ~V~~aL~~~g~~~~~aei~~~P~~~v~-----l~~e~~~~~~klid~Led 228 (240)
T 1mw7_A 184 LLNEGFESLKLPILKASLQRIATTPIE-----LNDEQMELTEKLLDRIED 228 (240)
T ss_dssp HHHHHHHHTTCCCSEEEEEEEESSCBC-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCeeeeeeEeCCCCCcc-----cCHHHHHHHHHHHHHHhc
Confidence 345555667888776666666665432 267889999999988874
No 257
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=46.70 E-value=38 Score=19.12 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=28.3
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCH---HHHHHHHHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNE---DDAAYYVQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~---~e~~~~~~~~GW~~ 44 (81)
+++..+.. ...++..++|..+|++. ..+.+-..++||..
T Consensus 37 ~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 78 (139)
T 3bja_A 37 GVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVM 78 (139)
T ss_dssp HHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCee
Confidence 45556643 56799999999999955 44555566789985
No 258
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=46.58 E-value=40 Score=19.33 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=18.7
Q ss_pred cHHHHHHHhCCCHHHHHHHHHhcC
Q 036949 18 STQDTALFLGMNEDDAAYYVQQQG 41 (81)
Q Consensus 18 s~~~~a~~Lgls~~e~~~~~~~~G 41 (81)
+...+|+.||++..-+..-..+.|
T Consensus 73 n~~~AA~~LGIsR~TL~rkLkk~g 96 (98)
T 1eto_A 73 NQTRAALMMGINRGTLRKKLKKYG 96 (98)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Confidence 567899999999888876666554
No 259
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=46.33 E-value=23 Score=21.59 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=22.5
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|..++++++|+-.|+|.
T Consensus 10 r~~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~ 42 (206)
T 1vi0_A 10 YMQIIDAAVEVIAENGYHQSQVSKIAKQAGVAD 42 (206)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCh
Confidence 455554 4568899999999999999976
No 260
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=46.26 E-value=35 Score=20.69 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=18.7
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|. ++++++|+-.|+|.
T Consensus 25 f~~~G~~-~s~~~IA~~agvs~ 45 (224)
T 1t33_A 25 FGEYGLH-ATTRDIAALAGQNI 45 (224)
T ss_dssp HHHHGGG-SCHHHHHHHHTSCH
T ss_pred HHHhCcc-ccHHHHHHHhCCCH
Confidence 4568999 99999999999977
No 261
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=46.16 E-value=24 Score=21.29 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=19.0
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..++++++|+-.|+|.
T Consensus 24 f~~~G~~~~s~~~IA~~agvs~ 45 (212)
T 2ras_A 24 VEERGGAGLTLSELAARAGISQ 45 (212)
T ss_dssp HHHHTSSCCCHHHHHHHHTSCH
T ss_pred HHHhCcccCcHHHHHHHhCCCH
Confidence 3467899999999999999876
No 262
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=46.13 E-value=30 Score=20.99 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|...+++++|+-.|+|.
T Consensus 25 f~~~G~~~ts~~~IA~~aGvsk 46 (211)
T 3bhq_A 25 FISKGYDGTSMEEIATKAGASK 46 (211)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHhCcccCCHHHHHHHhCCCH
Confidence 4567899999999999999976
No 263
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=46.06 E-value=20 Score=21.25 Aligned_cols=22 Identities=14% Similarity=0.222 Sum_probs=19.3
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 16 ~~~~G~~~~ti~~IA~~agvs~ 37 (189)
T 3geu_A 16 FSEKGYDGTTLDDIAKSVNIKK 37 (189)
T ss_dssp HHHHHHHHCCHHHHHHHTTCCH
T ss_pred HHHcCcccCCHHHHHHHhCCCH
Confidence 4467899999999999999976
No 264
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=46.05 E-value=28 Score=17.64 Aligned_cols=21 Identities=5% Similarity=0.026 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHh
Q 036949 19 TQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~ 39 (81)
...+|..+||++..+..+...
T Consensus 31 r~~La~~~gl~~~qV~~WFqN 51 (60)
T 1k61_A 31 LENLMKNTSLSRIQIKNWVSN 51 (60)
T ss_dssp HHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 557899999999998887654
No 265
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=45.99 E-value=34 Score=18.65 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=28.3
Q ss_pred HHHHHHHHhcccccHHHH----HHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDT----ALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~----a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++ |..+|++..-+-.. ..++||..
T Consensus 12 ~iL~~l~~-~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~ 57 (99)
T 1tbx_A 12 IVLAYLYD-NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVK 57 (99)
T ss_dssp HHHHHHTT-CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEE
Confidence 45666654 467999999 99999987766544 44679985
No 266
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=45.99 E-value=31 Score=21.29 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=19.6
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 53 f~~~G~~~~t~~~IA~~Agvs~ 74 (225)
T 2id3_A 53 LAADGFDALDLGEIARRAGVGK 74 (225)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH
T ss_pred HHHhCcccCCHHHHHHHHCCCH
Confidence 5567899999999999999977
No 267
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=45.99 E-value=29 Score=17.49 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHhcc-cccHHHHHHHhCCCHHHHHHHHH
Q 036949 2 YTKRMFQLLMSAYS-TISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 2 ~R~~~~~li~~AY~-sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
++.++..++...++ .=++.++|.-+|++..-+..+..
T Consensus 10 fK~~~~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 10 FKLQVLESYRNDNDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp HHHHHHHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 34455444443321 11288999999999888877654
No 268
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=45.91 E-value=31 Score=18.26 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=25.9
Q ss_pred HHHHHHHHhcccc-------cHHHHHHHhCCCHHHHHHHHHhc
Q 036949 5 RMFQLLMSAYSTI-------STQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 5 ~~~~li~~AY~sI-------s~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
.-...+++.|..+ ....+|..|||++..+.-+...+
T Consensus 11 ~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNR 53 (72)
T 1uhs_A 11 DQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQR 53 (72)
T ss_dssp HHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHH
Confidence 3455666777641 25679999999999998887644
No 269
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=45.86 E-value=29 Score=20.71 Aligned_cols=40 Identities=23% Similarity=0.157 Sum_probs=26.0
Q ss_pred HHHHHHHHh-cccccHHHHHHHhCCCHHH---HHHHHHhcCCeE
Q 036949 5 RMFQLLMSA-YSTISTQDTALFLGMNEDD---AAYYVQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~A-Y~sIs~~~~a~~Lgls~~e---~~~~~~~~GW~~ 44 (81)
.++..|... -..++..++|..||++..- +.+-..++||..
T Consensus 50 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 93 (168)
T 3u2r_A 50 NTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVL 93 (168)
T ss_dssp HHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEe
Confidence 355556554 3589999999999996544 455556789986
No 270
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=45.74 E-value=31 Score=20.27 Aligned_cols=22 Identities=9% Similarity=0.255 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
...+-|..++++++|+-.|+|.
T Consensus 23 f~~~G~~~~t~~~IA~~agvs~ 44 (197)
T 3rd3_A 23 MAVKGFSGVGLNEILQSAGVPK 44 (197)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHCCcccCCHHHHHHHhCCCh
Confidence 4578899999999999999976
No 271
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=45.67 E-value=43 Score=19.42 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=25.1
Q ss_pred hcccccHHHHHHHhCCCHHHHHHH---HHhcCCeEe
Q 036949 13 AYSTISTQDTALFLGMNEDDAAYY---VQQQGWTLD 45 (81)
Q Consensus 13 AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d 45 (81)
....++..++|..||++..-+... ..+.||..-
T Consensus 19 ~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r 54 (142)
T 1on2_A 19 EKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIY 54 (142)
T ss_dssp HHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred hcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 346799999999999987665444 446799853
No 272
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=45.65 E-value=20 Score=21.02 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+..+-|..+++.++|+-.|+|.
T Consensus 21 ~~~~G~~~~ti~~Ia~~agvs~ 42 (188)
T 3qkx_A 21 MAREGLNQLSMLKLAKEANVAA 42 (188)
T ss_dssp HHHSCSTTCCHHHHHHHHTCCH
T ss_pred HHhcCcccCCHHHHHHHhCCCc
Confidence 4567899999999999999977
No 273
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=45.65 E-value=19 Score=21.45 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=19.7
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 33 ~~~~G~~~~t~~~Ia~~agvs~ 54 (203)
T 3mnl_A 33 ASKGGYEAVQMRAVADRADVAV 54 (203)
T ss_dssp HHHHHHHHCCHHHHHHHHTCCH
T ss_pred HHHcCCccCCHHHHHHHcCCCh
Confidence 5678899999999999999976
No 274
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=45.60 E-value=21 Score=22.16 Aligned_cols=22 Identities=27% Similarity=0.232 Sum_probs=19.7
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 56 ~~~~G~~~~tv~~IA~~AGvs~ 77 (229)
T 3bni_A 56 LDEVGYDALSTRAVALRADVPI 77 (229)
T ss_dssp HHHHCTTTCCHHHHHHHHTCCH
T ss_pred HHhcChhhccHHHHHHHHCCCc
Confidence 5577899999999999999977
No 275
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=45.28 E-value=13 Score=21.71 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=18.6
Q ss_pred HHHhcccccHHHHHHHhCCCH
Q 036949 10 LMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 10 i~~AY~sIs~~~~a~~Lgls~ 30 (81)
.++-|..++++++|+-.|+|.
T Consensus 18 ~~~G~~~~t~~~Ia~~agvs~ 38 (170)
T 3egq_A 18 MKKPPHEVSIEEIAREAKVSK 38 (170)
T ss_dssp TTSCGGGCCHHHHHHHHTSCH
T ss_pred HhcCCccCcHHHHHHHhCCCc
Confidence 367899999999999999977
No 276
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.24 E-value=36 Score=18.38 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=26.7
Q ss_pred HHHHHHHHhcccc----------cHHHHHHHhCCCHHHHHHHHHhc
Q 036949 5 RMFQLLMSAYSTI----------STQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 5 ~~~~li~~AY~sI----------s~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
.-...+++.|..- ....+|.-|||++..+.-+...+
T Consensus 18 ~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNr 63 (80)
T 2da4_A 18 RDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNR 63 (80)
T ss_dssp HHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHH
Confidence 4455667777665 34578999999999998887654
No 277
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=45.17 E-value=21 Score=21.22 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..++++++|+-.|+|.
T Consensus 24 f~~~G~~~~ti~~IA~~agvs~ 45 (204)
T 3eup_A 24 FNVKGLAGTSLTDLTEATNLTK 45 (204)
T ss_dssp HHHHHHHHCCHHHHHHHHTCCH
T ss_pred HHHcCcccCCHHHHHHHhCCCc
Confidence 4468999999999999999976
No 278
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=45.15 E-value=23 Score=21.17 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 22 ~~~~G~~~~ti~~IA~~agvs~ 43 (193)
T 2dg8_A 22 IAEEGIARVSHRRIAQRAGVPL 43 (193)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCT
T ss_pred HHHhChhhccHHHHHHHhCCCc
Confidence 4578899999999999999976
No 279
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=45.08 E-value=21 Score=21.50 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=19.7
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 23 ~~~~G~~~~ti~~Ia~~agvs~ 44 (216)
T 3s5r_A 23 FAEQGIAATTMAEIAASVGVNP 44 (216)
T ss_dssp HHHHCTTTCCHHHHHHTTTCCH
T ss_pred HHHcCcccCCHHHHHHHHCCCH
Confidence 5678899999999999999976
No 280
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=45.05 E-value=34 Score=20.06 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=19.2
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 21 ~~~~G~~~~t~~~Ia~~agvs~ 42 (183)
T 1zk8_A 21 ADANGVQEVTLASLAQTLGVRS 42 (183)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCH
T ss_pred HHhcCccccCHHHHHHHcCCCc
Confidence 4567899999999999999876
No 281
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=45.01 E-value=8.9 Score=19.61 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=15.0
Q ss_pred ChhHHHHHHhHHHhhcC
Q 036949 65 DPSKMQCLTEYVFHLEH 81 (81)
Q Consensus 65 ~~~~l~~Lt~~v~~LE~ 81 (81)
+.++++.|++=|..|||
T Consensus 5 s~eeF~~L~rRVlqlE~ 21 (45)
T 4gif_A 5 SGEEFYMLTRRVLQLET 21 (45)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 67899999999999885
No 282
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=44.91 E-value=23 Score=21.00 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=22.7
Q ss_pred ccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 17 ISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
++.+++|..+|++..++..... ++|+--
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~ 82 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIA 82 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 8999999999999888766554 568864
No 283
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=44.84 E-value=20 Score=21.57 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=22.6
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|..++++++|+-.|+|.
T Consensus 16 r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~ 48 (203)
T 3ccy_A 16 RDTIIERAAAMFARQGYSETSIGDIARACECSK 48 (203)
T ss_dssp HHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCc
Confidence 556665 4567899999999999999865
No 284
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=44.84 E-value=21 Score=21.49 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=19.0
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 21 f~~~G~~~~t~~~IA~~agvs~ 42 (199)
T 2o7t_A 21 YRTHHHDSLTMENIAEQAGVGV 42 (199)
T ss_dssp HHHSCGGGCCHHHHHHHHTCCH
T ss_pred HHHCCCccCCHHHHHHHhCCCH
Confidence 4456799999999999999976
No 285
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=44.82 E-value=10 Score=26.33 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=30.6
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeEe
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTLD 45 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~d 45 (81)
+|++++. ...+|..++|+.+|||..-+...+. +.||...
T Consensus 24 ~il~~l~--~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 24 RILKRIM--KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp CSHHHHH--HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 4778887 7899999999999998866655544 5688754
No 286
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=44.67 E-value=23 Score=21.04 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=18.3
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 29 ~~~~G~~~~t~~~Ia~~agvs~ 50 (211)
T 3him_A 29 FAAKGYGATTTREIAASLDMSP 50 (211)
T ss_dssp HHHHCSTTCCHHHHHHHTTCCT
T ss_pred HHHcCCCcCCHHHHHHHhCCCc
Confidence 4467999999999999888754
No 287
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=44.50 E-value=20 Score=21.49 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=19.6
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 17 ~~~~G~~~~t~~~Ia~~agvs~ 38 (185)
T 2yve_A 17 IGEYSLETLSYDSLAEATGLSK 38 (185)
T ss_dssp HHHSCSTTCCHHHHHHHHCCCH
T ss_pred HHHcChhhccHHHHHHHhCCCh
Confidence 4577899999999999999987
No 288
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=44.39 E-value=24 Score=17.33 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=18.8
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|+|..-+..+..
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 457888999999998887766544
No 289
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=44.33 E-value=33 Score=22.05 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=19.3
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+-++-|..+++.++|+-+|++.
T Consensus 19 ~~~~G~~~~S~r~IA~~aGvs~ 40 (234)
T 2opt_A 19 LDAEGLDALSMRRLAQELKTGH 40 (234)
T ss_dssp HHHHCGGGCCHHHHHHHHTCCH
T ss_pred HHhCCccccCHHHHHHHHCCCh
Confidence 4467899999999999999977
No 290
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=44.30 E-value=46 Score=19.41 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=28.6
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
+++..+.. ...++..++|..||++..-+-.. ..++||..
T Consensus 48 ~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 89 (154)
T 2eth_A 48 YAFLYVAL-FGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVV 89 (154)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45566654 34799999999999987665544 45679985
No 291
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=44.26 E-value=39 Score=19.43 Aligned_cols=39 Identities=8% Similarity=0.041 Sum_probs=25.5
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHH---HHHHHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDA---AYYVQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~ 44 (81)
.++..+.. ...++..++|..+|++..-+ .+-..++||..
T Consensus 41 ~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 82 (142)
T 3ech_A 41 HVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVR 82 (142)
T ss_dssp HHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 34555544 35799999999999976554 44455789986
No 292
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=44.19 E-value=27 Score=21.05 Aligned_cols=22 Identities=5% Similarity=0.078 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..++++++|+-.|+|.
T Consensus 22 f~~~G~~~~t~~~Ia~~Agvs~ 43 (204)
T 3anp_C 22 FRNRGFQETTATEIAKAAHVSR 43 (204)
T ss_dssp HHHHCTTTCCHHHHHHHHTSCH
T ss_pred HHHcCcccccHHHHHHHcCCch
Confidence 4567899999999999999977
No 293
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=44.09 E-value=37 Score=18.50 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=20.9
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY 36 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~ 36 (81)
+++.++ +.-.+..++|..||+|..-+...
T Consensus 36 ~vl~l~---~~g~s~~eIA~~l~is~~tV~~~ 64 (91)
T 2rnj_A 36 EILLLI---AKGYSNQEIASASHITIKTVKTH 64 (91)
T ss_dssp HHHHHH---HTTCCTTHHHHHHTCCHHHHHHH
T ss_pred HHHHHH---HcCCCHHHHHHHHCcCHHHHHHH
Confidence 444443 67788899999999988666544
No 294
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=44.07 E-value=24 Score=21.23 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.8
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 24 f~~~G~~~~ti~~Ia~~agvs~ 45 (216)
T 3f0c_A 24 FAHYGLCKTTMNEIASDVGMGK 45 (216)
T ss_dssp HHHHCSSSCCHHHHHHHHTCCH
T ss_pred HHHcCCCcCCHHHHHHHhCCCH
Confidence 5678899999999999999977
No 295
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=44.05 E-value=25 Score=21.25 Aligned_cols=22 Identities=9% Similarity=0.155 Sum_probs=19.1
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|...+++++|+-.|+|.
T Consensus 25 f~~~Gy~~ts~~~IA~~agvs~ 46 (205)
T 1rkt_A 25 FKRKGFELTTMKDVVEESGFSR 46 (205)
T ss_dssp HHHHCSTTCCHHHHHHHHTSCH
T ss_pred HHHcCcccCCHHHHHHHHCCCc
Confidence 4567899999999999999876
No 296
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=43.96 E-value=27 Score=21.15 Aligned_cols=28 Identities=25% Similarity=0.310 Sum_probs=22.2
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ...+-|..++++++|+-.|+|.
T Consensus 16 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvsk 48 (199)
T 3crj_A 16 TEEIMQATYRALREHGYADLTIQRIADEYGKST 48 (199)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCh
Confidence 455554 4567899999999999999876
No 297
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=43.95 E-value=45 Score=19.14 Aligned_cols=38 Identities=8% Similarity=-0.022 Sum_probs=26.9
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+... .. +..++|..+|++..-+-.. ..++||..
T Consensus 41 ~iL~~l~~~-~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~ 81 (144)
T 3f3x_A 41 SILKATSEE-PR-SMVYLANRYFVTQSAITAAVDKLEAKGLVR 81 (144)
T ss_dssp HHHHHHHHS-CE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHC-CC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 455556543 33 9999999999987766555 44679985
No 298
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=43.90 E-value=28 Score=20.77 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=18.1
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-| .++++++|+-.|+|.
T Consensus 29 f~~~G~-~~s~~~Ia~~agvs~ 49 (199)
T 2rek_A 29 VARHGA-DASLEEIARRAGVGS 49 (199)
T ss_dssp HHHHGG-GCCHHHHHHHHTCCH
T ss_pred HHhcCC-CCCHHHHHHHhCCch
Confidence 345789 999999999999976
No 299
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=43.87 E-value=34 Score=20.09 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.6
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 20 ~~~~G~~~~t~~~IA~~agvs~ 41 (199)
T 3qbm_A 20 FNVSGYAGTAISDIMAATGLEK 41 (199)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCH
T ss_pred HHHhCcCcCCHHHHHHHhCCCc
Confidence 5678899999999999999977
No 300
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=43.83 E-value=20 Score=22.22 Aligned_cols=22 Identities=5% Similarity=-0.077 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 43 f~~~G~~~~s~~~IA~~aGvs~ 64 (226)
T 2pz9_A 43 FARHGIAGARVDRIAKQARTSK 64 (226)
T ss_dssp HHHHHHHHCCHHHHHHHTTSCH
T ss_pred HHHhCcccCcHHHHHHHHCCCh
Confidence 4567899999999999999976
No 301
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=43.55 E-value=24 Score=21.37 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=23.1
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|..++++++|.-.|+|.
T Consensus 12 R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~ 44 (210)
T 3vib_A 12 KEHLMLAALETFYRKGIARTSLNEIAQAAGVTR 44 (210)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCH
Confidence 556655 4678999999999999999976
No 302
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=43.49 E-value=21 Score=21.66 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=19.3
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|.-.|+|.
T Consensus 43 ~~~~G~~~~t~~~IA~~aGvs~ 64 (222)
T 3bru_A 43 LTEKGYSSVGVDEILKAARVPK 64 (222)
T ss_dssp HHHSCTTTCCHHHHHHHHTCCH
T ss_pred HHHcCCCcCcHHHHHHHhCCCc
Confidence 4557899999999999999977
No 303
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=43.11 E-value=47 Score=19.11 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=28.3
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..+|++..-+-.. ..++||..
T Consensus 44 ~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 85 (148)
T 3nrv_A 44 RIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
T ss_dssp HHHHHHHH-SSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34555543 45899999999999987766555 45679986
No 304
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=43.09 E-value=42 Score=20.11 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=18.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHh
Q 036949 17 ISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~~~ 39 (81)
-....+|+-|||+..++..+-.+
T Consensus 18 ~~Wk~LAR~LGlse~dId~Ie~~ 40 (122)
T 3ezq_B 18 KDWRRLARQLKVSDTKIDSIEDR 40 (122)
T ss_dssp TTHHHHHHHTTCCHHHHHHHHHH
T ss_pred hhHHHHHHHhCCCHHHHHHHHHH
Confidence 46778999999999998876543
No 305
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=43.05 E-value=35 Score=20.06 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.3
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+..+-|..++++++|+-.|+|.
T Consensus 24 f~~~G~~~~tv~~Ia~~agvs~ 45 (196)
T 3he0_A 24 IAESGFQGLSMQKLANEAGVAA 45 (196)
T ss_dssp HHHHCTTTCCHHHHHHHHTSCH
T ss_pred HHHhCcccCCHHHHHHHhCCCc
Confidence 5677899999999999999876
No 306
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=42.84 E-value=46 Score=19.04 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=28.2
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
.++..+.. ...++..++|..+|++..-+... ..++||..
T Consensus 44 ~iL~~l~~-~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~ 85 (147)
T 1z91_A 44 LALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLIT 85 (147)
T ss_dssp HHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHH-CCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEE
Confidence 45555554 35799999999999987665544 44679986
No 307
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=42.80 E-value=25 Score=20.78 Aligned_cols=27 Identities=11% Similarity=0.239 Sum_probs=21.5
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ +.++-|. ++++++|+-.|+|.
T Consensus 11 r~~Il~aA~~lf~~~G~~-~t~~~IA~~aGvs~ 42 (190)
T 3jsj_A 11 RERLLEAAAALTYRDGVG-IGVEALCKAAGVSK 42 (190)
T ss_dssp HHHHHHHHHHHHHHHCTT-CCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHhCcc-ccHHHHHHHhCCCH
Confidence 555554 4568899 99999999999876
No 308
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=42.79 E-value=26 Score=17.42 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=19.2
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|++..-+..+-.
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 467889999999999888776543
No 309
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=42.79 E-value=30 Score=21.75 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=22.6
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|..+++.++|+-.|+|.
T Consensus 20 r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~ 52 (251)
T 3npi_A 20 TDTVLDIALSLFSELGFSDAKLEAIAKKSGMSK 52 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHHHHCCCH
Confidence 455554 5667899999999999999977
No 310
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=42.73 E-value=25 Score=19.53 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=17.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHh
Q 036949 19 TQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~ 39 (81)
...+|..+||++.++..+...
T Consensus 33 r~~LA~~tgLte~qIkvWFqN 53 (76)
T 2ecc_A 33 YQKLEQITGLPRPEIIQWFGD 53 (76)
T ss_dssp HHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHhhHHhHh
Confidence 456999999999999887654
No 311
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=42.70 E-value=44 Score=18.76 Aligned_cols=40 Identities=8% Similarity=0.076 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhcccccHHHHHHHh-CCCHHHHHHH---HHhcCCeE
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFL-GMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~L-gls~~e~~~~---~~~~GW~~ 44 (81)
|-.|+..+. ...++..+++..+ |++..-+-.. ..+.||.-
T Consensus 16 ~~~IL~~L~--~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~ 59 (107)
T 2hzt_A 16 KXVILXHLT--HGKKRTSELKRLMPNITQKMLTQQLRELEADGVIN 59 (107)
T ss_dssp HHHHHHHHT--TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHH--hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEE
Confidence 345666664 5789999999999 9988766554 45679985
No 312
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=42.67 E-value=25 Score=20.99 Aligned_cols=21 Identities=10% Similarity=0.026 Sum_probs=18.1
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|. ++++++|+-.|+|.
T Consensus 28 f~~~G~~-~s~~~IA~~agvs~ 48 (194)
T 2q24_A 28 FSEEGLD-AHLERIAREAGVGS 48 (194)
T ss_dssp HHHHCTT-CCHHHHHHHTTCCH
T ss_pred HHhcCcC-CCHHHHHHHhCCCh
Confidence 4457798 99999999999987
No 313
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=42.65 E-value=22 Score=21.20 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=22.6
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|...+++++|+-.|+|.
T Consensus 20 R~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~ 52 (212)
T 3loc_A 20 KKAILSAALDTFSQFGFHGTRLEQIAELAGVSK 52 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHHCcCH
Confidence 455554 4578899999999999999976
No 314
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=42.61 E-value=15 Score=24.32 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=30.3
Q ss_pred HHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeEe
Q 036949 6 MFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTLD 45 (81)
Q Consensus 6 ~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~d 45 (81)
|+.++...-..+++.++|+.+|++..-+-.+.. +.||-.-
T Consensus 11 IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~ 53 (260)
T 3r4k_A 11 LLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQ 53 (260)
T ss_dssp HHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 455666655679999999999998877655544 6799863
No 315
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=42.48 E-value=28 Score=21.03 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=19.1
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..++++++|+-.|+|.
T Consensus 27 f~~~G~~~~s~~~IA~~agvs~ 48 (204)
T 2ibd_A 27 FAERGLRATTVRDIADAAGILS 48 (204)
T ss_dssp HHHHCSTTCCHHHHHHHTTSCH
T ss_pred HHHcCchhcCHHHHHHHhCCCc
Confidence 4467899999999999999976
No 316
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=42.25 E-value=26 Score=19.53 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHHHHHhcccc-------cHHHHHHHhCCCHHHHHHHHHhcCCeE
Q 036949 5 RMFQLLMSAYSTI-------STQDTALFLGMNEDDAAYYVQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sI-------s~~~~a~~Lgls~~e~~~~~~~~GW~~ 44 (81)
+-+..+..+|..+ -...+|..|||++..+..|.+.+-.-+
T Consensus 17 eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 17 EALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp HHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 3445566666662 356799999999999999988764433
No 317
>2ll0_A Uncharacterized protein; structural genomics, joint center for structural genomics, J unknown function; NMR {Paracoccus denitrificans}
Probab=42.11 E-value=10 Score=22.66 Aligned_cols=18 Identities=39% Similarity=0.460 Sum_probs=16.5
Q ss_pred HHHHhCCCHHHHHHHHHh
Q 036949 22 TALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 22 ~a~~Lgls~~e~~~~~~~ 39 (81)
+|..||++++++..|+..
T Consensus 37 AAe~lGltg~~a~aYa~~ 54 (104)
T 2ll0_A 37 AAGLLGKTGDDARAYALT 54 (104)
T ss_dssp HHHHHTCCTTHHHHHHTT
T ss_pred HHHHcCCCHHHHHHHHHH
Confidence 789999999999999985
No 318
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=42.03 E-value=33 Score=21.21 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 52 f~e~G~~~~tv~~IA~~AGvs~ 73 (214)
T 2guh_A 52 FATRPYREITLKDIAEDAGVSA 73 (214)
T ss_dssp HHHSCGGGCCHHHHHHHHTSCH
T ss_pred HHHcChhhcCHHHHHHHhCCCH
Confidence 4567899999999999999977
No 319
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=42.01 E-value=28 Score=17.84 Aligned_cols=24 Identities=8% Similarity=-0.035 Sum_probs=18.5
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|++..-+-.+..
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 357888899999998887776654
No 320
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=41.73 E-value=28 Score=21.19 Aligned_cols=28 Identities=4% Similarity=0.044 Sum_probs=22.5
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|...+++++|+-.|+|.
T Consensus 13 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk 45 (219)
T 2w53_A 13 REGILDAAEACFHEHGVARTTLEMIGARAGYTR 45 (219)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCc
Confidence 555554 4568899999999999999876
No 321
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=41.69 E-value=27 Score=20.99 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=19.2
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|...|++++|+-.|+|.
T Consensus 25 f~~~G~~~~s~~~IA~~aGvs~ 46 (197)
T 2hyt_A 25 FSERGYADTSMDDLTAQASLTR 46 (197)
T ss_dssp HHHHCTTTCCHHHHHHHHTCCT
T ss_pred HHHhCcccCCHHHHHHHhCCCH
Confidence 4568899999999999999976
No 322
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=41.67 E-value=29 Score=17.45 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|..|||++..+.-+...+
T Consensus 27 r~~LA~~l~l~~~qV~~WFqNR 48 (56)
T 3a03_A 27 RAALAKALRMTDAQVKTWFQNR 48 (56)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHhhHhhHHh
Confidence 4568999999999988776543
No 323
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=41.62 E-value=29 Score=21.30 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=22.8
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|..++++++|+-.|+|.
T Consensus 7 r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~ 39 (228)
T 3nnr_A 7 RDKILLSSLELFNDKGERNITTNHIAAHLAISP 39 (228)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHhChhhcCHHHHHHHhCCCC
Confidence 555554 5578899999999999999976
No 324
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=41.56 E-value=47 Score=18.69 Aligned_cols=41 Identities=2% Similarity=-0.074 Sum_probs=29.0
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeEeCCC
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTLDPAS 48 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~d~~~ 48 (81)
.|+..+. +. +....+|..+|+++.-+..+ ..++|..--.++
T Consensus 12 ~IL~~i~--~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~~ 55 (95)
T 1r7j_A 12 AILEACK--SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGK 55 (95)
T ss_dssp HHHHHHT--TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHH--cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEECC
Confidence 3455554 34 99999999999988776555 557899864333
No 325
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=41.52 E-value=25 Score=20.55 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.7
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 27 f~~~G~~~~ti~~Ia~~agvs~ 48 (156)
T 3ljl_A 27 LLRLGYDKMSYTTLSQQTGVSR 48 (156)
T ss_dssp HHHTHHHHCCHHHHHHHHTCCH
T ss_pred HHHhChhhcCHHHHHHHHCCCH
Confidence 5578899999999999999987
No 326
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=41.51 E-value=68 Score=22.50 Aligned_cols=31 Identities=6% Similarity=0.193 Sum_probs=27.4
Q ss_pred cccHHHHHHHhCC--CHHHHHHHHHhcCCeEeC
Q 036949 16 TISTQDTALFLGM--NEDDAAYYVQQQGWTLDP 46 (81)
Q Consensus 16 sIs~~~~a~~Lgl--s~~e~~~~~~~~GW~~d~ 46 (81)
.++.+.+.++||+ +.+++.+..+..|-++..
T Consensus 284 ~~~~~~i~~~lG~~l~~~~i~~iL~~lg~~~~~ 316 (348)
T 2cxi_A 284 EVELDYIRKLSGLELNDGEIKELLEKMMYEVEI 316 (348)
T ss_dssp EEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEE
T ss_pred EecHHHHHHHhCCCCCHHHHHHHHHHcCCeEEe
Confidence 4678889999998 899999999999999853
No 327
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=41.25 E-value=28 Score=21.92 Aligned_cols=22 Identities=0% Similarity=-0.009 Sum_probs=18.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 59 f~~~G~~~~t~~~IA~~aGvs~ 80 (245)
T 3aqt_A 59 MAERGVDNVGIAEITEGANIGT 80 (245)
T ss_dssp HHHHCGGGCCHHHHHHHTTSCG
T ss_pred HHhcCcccCcHHHHHHHhCCCh
Confidence 4456899999999999999865
No 328
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=41.25 E-value=32 Score=20.99 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=22.5
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ...+-|..++++++|+-.|+|.
T Consensus 5 r~~Il~aA~~lf~~~G~~~~s~~~IA~~AGvsk 37 (208)
T 2g3b_A 5 RDAILKASATAIAQRGIRGLRVNDVAEVAGVSP 37 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCH
Confidence 455554 4568899999999999999976
No 329
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=41.21 E-value=57 Score=19.58 Aligned_cols=50 Identities=12% Similarity=-0.041 Sum_probs=34.0
Q ss_pred HHHHHHHHhcc--cccHHHHHHHhCCCHHHHHHHHH---hcCCeEeC---CCceEeec
Q 036949 5 RMFQLLMSAYS--TISTQDTALFLGMNEDDAAYYVQ---QQGWTLDP---ASRMLTVK 54 (81)
Q Consensus 5 ~~~~li~~AY~--sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~d~---~~~~~~p~ 54 (81)
+++..++.... .++..++|..+|+|+.-+.+... +.|+.... +|.+..-+
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 72 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRV 72 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESS
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecC
Confidence 45556665543 59999999999999988777655 45996533 34454433
No 330
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=41.14 E-value=29 Score=21.72 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.1
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+-++-|..+++.++|+-+|++.
T Consensus 15 ~~~~G~~~~s~~~IA~~aGvs~ 36 (209)
T 3bqy_A 15 LNESGLDTLTMRRLAQAMDVQA 36 (209)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCH
T ss_pred HHhCCcccCCHHHHHHHhCCCc
Confidence 3467899999999999999976
No 331
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=41.11 E-value=26 Score=21.02 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 44 ~~~~G~~~~tv~~Ia~~agvs~ 65 (218)
T 3dcf_A 44 FREKGYYATSLDDIADRIGFTK 65 (218)
T ss_dssp HHHTCTTTCCHHHHHHHHTCCH
T ss_pred HHHcCcccCcHHHHHHHhCCCH
Confidence 5567899999999999999976
No 332
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=40.96 E-value=32 Score=21.16 Aligned_cols=22 Identities=9% Similarity=-0.049 Sum_probs=19.6
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 41 f~~~G~~~~t~~~IA~~aGvs~ 62 (217)
T 3hta_A 41 VGQKGIAGLSHRTVAAEADVPL 62 (217)
T ss_dssp HHHHTGGGCCHHHHHHHHTCCH
T ss_pred HHHcCcccCCHHHHHHHcCCCc
Confidence 4578999999999999999976
No 333
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=40.75 E-value=23 Score=18.79 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHhcCCeEe
Q 036949 28 MNEDDAAYYVQQQGWTLD 45 (81)
Q Consensus 28 ls~~e~~~~~~~~GW~~d 45 (81)
++..|+++...+.||.+.
T Consensus 5 ~~~~elik~L~~~G~~~~ 22 (70)
T 1whz_A 5 PRPEEVARKLRRLGFVER 22 (70)
T ss_dssp CCHHHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHHHCCCEEe
Confidence 578999999999999974
No 334
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=40.68 E-value=30 Score=20.46 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 21 ~~~~G~~~~t~~~IA~~Agvs~ 42 (194)
T 3dpj_A 21 FYRQGFAQTSFVDISAAVGISR 42 (194)
T ss_dssp HHHHCTTTCCHHHHHHHHTCCH
T ss_pred HHHcCcccCCHHHHHHHHCCCh
Confidence 4578899999999999999976
No 335
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=40.66 E-value=25 Score=21.39 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=22.2
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|...|++++|+-.|+|.
T Consensus 13 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk 45 (210)
T 2wui_A 13 RDGILDAAERVFLEKGVGTTAMADLADAAGVSR 45 (210)
T ss_dssp HHHHHHHHHHHHHHSCTTTCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHcCccccCHHHHHHHhCCCH
Confidence 455554 4567899999999999999876
No 336
>1ru0_A DCOH-like protein dcohm; alpha and beta structure, lyase; 1.60A {Mus musculus} SCOP: d.74.1.1
Probab=40.57 E-value=30 Score=20.19 Aligned_cols=20 Identities=10% Similarity=0.373 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHhc---CCeEeCC
Q 036949 28 MNEDDAAYYVQQQ---GWTLDPA 47 (81)
Q Consensus 28 ls~~e~~~~~~~~---GW~~d~~ 47 (81)
|+.+|+.+...+. ||++..+
T Consensus 10 Ls~~ei~~~L~~l~~~gW~~~~~ 32 (105)
T 1ru0_A 10 LTAEERDQLIPGLKAAGWSELSE 32 (105)
T ss_dssp CCHHHHHHHHHHHHHTTCEECSS
T ss_pred CCHHHHHHHHHhCCCCCCeEECC
Confidence 5788888888775 9998644
No 337
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=40.51 E-value=48 Score=22.65 Aligned_cols=41 Identities=20% Similarity=0.173 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeE
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~ 44 (81)
+.+|+.++. .-..++.+++|..||+|..-+..... +.|-.+
T Consensus 7 ~~~Il~~L~-~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 7 PLKLIALLA-NGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHHT-TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHH-cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 567888884 55679999999999999987755544 456654
No 338
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=40.41 E-value=50 Score=18.69 Aligned_cols=40 Identities=13% Similarity=0.162 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcccccHHHHHHHh-CCCHHHHHHHH---HhcCCeE
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFL-GMNEDDAAYYV---QQQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~L-gls~~e~~~~~---~~~GW~~ 44 (81)
+-.|+..+.. ..++..+++..| |++..-+-... .+.||.-
T Consensus 24 ~~~IL~~L~~--~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~ 67 (112)
T 1z7u_A 24 KLSLMDELFQ--GTKRNGELMRALDGITQRVLTDRLREMEKDGLVH 67 (112)
T ss_dssp HHHHHHHHHH--SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHh--CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEE
Confidence 3456677763 789999999999 99887665554 4679985
No 339
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=40.32 E-value=31 Score=20.82 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=19.0
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|...+++++|+-.|+|.
T Consensus 22 f~~~G~~~~s~~~IA~~aGvsk 43 (203)
T 3cdl_A 22 FGDRGFEITSMDRIAARAEVSK 43 (203)
T ss_dssp HHHHCTTTCCHHHHHHHTTSCH
T ss_pred HHHcCchhcCHHHHHHHhCCCH
Confidence 4567899999999999999876
No 340
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=40.25 E-value=24 Score=18.69 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=15.6
Q ss_pred HHHHHhCCCHHHHHHHHHh
Q 036949 21 DTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 21 ~~a~~Lgls~~e~~~~~~~ 39 (81)
.-|.-+||+.+|+.+|..-
T Consensus 20 ~~Ak~lGlsleEIrefL~l 38 (57)
T 1b0n_B 20 VEAKEANISPEEIRKYLLL 38 (57)
T ss_dssp HHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 3467789999999999873
No 341
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=40.17 E-value=28 Score=22.18 Aligned_cols=25 Identities=8% Similarity=0.119 Sum_probs=21.2
Q ss_pred HHHHhcccccHHHHHHHhCCCHHHH
Q 036949 9 LLMSAYSTISTQDTALFLGMNEDDA 33 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~~e~ 33 (81)
+.++-|..++++++|+-.|+|..-+
T Consensus 61 f~e~G~~~~Ti~~IA~~AGvs~~t~ 85 (260)
T 2of7_A 61 IRQQGYEATTVEQIAERAEVSPSTV 85 (260)
T ss_dssp HHHHCSTTCCHHHHHHHHTSCHHHH
T ss_pred HHHhCcccccHHHHHHHhCCChHHH
Confidence 5567899999999999999987444
No 342
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=40.16 E-value=25 Score=21.84 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=19.1
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 26 ~~~~G~~~~tv~~IA~~agvs~ 47 (231)
T 2qib_A 26 FSRRSPDEVSIDEIASAAGISR 47 (231)
T ss_dssp HHHSCGGGCCHHHHHHHHTSCH
T ss_pred HHHcCchhcCHHHHHHHhCCCH
Confidence 4467899999999999999976
No 343
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=40.07 E-value=56 Score=19.15 Aligned_cols=35 Identities=11% Similarity=0.138 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
+|.+|+.++. .-.+..++|..||+|..-+..+...
T Consensus 37 ~r~~iv~~~~---~G~s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 37 VRQRIVELAH---QGVRPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp HHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4677777774 3578899999999999888777653
No 344
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=40.03 E-value=30 Score=20.94 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=19.1
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..++++++|+-.|+|.
T Consensus 24 f~~~G~~~~s~~~IA~~aGvsk 45 (210)
T 2xdn_A 24 FYKRGVARTTLADIAELAGVTR 45 (210)
T ss_dssp HHHHCSTTCCHHHHHHHHTCCT
T ss_pred HHHcCcccCcHHHHHHHHCCCh
Confidence 4567899999999999999865
No 345
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=39.94 E-value=36 Score=20.91 Aligned_cols=28 Identities=7% Similarity=0.207 Sum_probs=22.5
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ...+-|...+++++|.-.|+|.
T Consensus 11 r~~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvsk 43 (215)
T 1ui5_A 11 RATIIGAAADLFDRRGYESTTLSEIVAHAGVTK 43 (215)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCc
Confidence 555554 4567899999999999999976
No 346
>3hxa_A Pterin-4-alpha-carbinolamine dehydratase; alpha and beta structure, lyase, nucleus, tetrahydrobiopteri biosynthesis; 1.80A {Rattus norvegicus} SCOP: d.74.1.1 PDB: 1dco_A 1dch_A 1dcp_A* 1f93_A
Probab=39.93 E-value=22 Score=20.80 Aligned_cols=20 Identities=10% Similarity=0.363 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHhc---CCeEeCC
Q 036949 28 MNEDDAAYYVQQQ---GWTLDPA 47 (81)
Q Consensus 28 ls~~e~~~~~~~~---GW~~d~~ 47 (81)
|+.+|+.+...+. ||++..+
T Consensus 8 Ls~~ei~~~L~~L~~~gW~~~~~ 30 (104)
T 3hxa_A 8 LSAEERDQLLPNLRAVGWNELEG 30 (104)
T ss_dssp CCHHHHHHHSHHHHTTTCEECSS
T ss_pred CCHHHHHHHHhhCCCCCCEEecC
Confidence 5888888887776 9999543
No 347
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=39.79 E-value=25 Score=21.39 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=24.0
Q ss_pred HHHHhcccccHHHHHHHhCCCH----------HHHHHHHHhc
Q 036949 9 LLMSAYSTISTQDTALFLGMNE----------DDAAYYVQQQ 40 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~----------~e~~~~~~~~ 40 (81)
+.++-|..++++++|+-.|+|. +++...+...
T Consensus 41 f~~~G~~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~~ 82 (215)
T 2qko_A 41 LAREGARGLTFRAVDVEANVPKGTASNYFPSRDDLFDQVGKR 82 (215)
T ss_dssp HHHTCTTTCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHHHH
T ss_pred HHHhChhhccHHHHHHHcCCCcchHHHhCCCHHHHHHHHHHH
Confidence 4467899999999999999865 5665555543
No 348
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=39.77 E-value=37 Score=20.46 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=22.5
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|..++++++|+-.|+|.
T Consensus 5 r~~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~ 37 (212)
T 3rh2_A 5 RDKIIQASLELFNEHGERTITTNHIAAHLDISP 37 (212)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCH
Confidence 455554 4578899999999999999976
No 349
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=39.75 E-value=31 Score=17.23 Aligned_cols=24 Identities=8% Similarity=0.117 Sum_probs=19.2
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|+|..-+..+-.
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 467889999999999887776543
No 350
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=39.73 E-value=36 Score=20.61 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
...+-|...|++++|+-.|+|.
T Consensus 24 F~~~Gy~~ts~~~IA~~aGvsk 45 (202)
T 2i10_A 24 FWRQGYEGTSITDLTKALGINP 45 (202)
T ss_dssp HHHHTTTTCCHHHHHHHHTCCH
T ss_pred HHHhCcccCCHHHHHHHhCCCh
Confidence 4568899999999999999977
No 351
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=39.55 E-value=33 Score=16.87 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=18.5
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|+|..-+..+-.
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHc
Confidence 467888999999998877766543
No 352
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=39.49 E-value=35 Score=20.54 Aligned_cols=22 Identities=5% Similarity=-0.136 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|...+++++|+-.|+|.
T Consensus 20 f~~~G~~~ts~~~IA~~aGvs~ 41 (197)
T 2gen_A 20 FSEHGVDATTIEMIRDRSGASI 41 (197)
T ss_dssp HHHHCTTTCCHHHHHHHHCCCH
T ss_pred HHHcCcccCCHHHHHHHHCCCh
Confidence 4567899999999999999977
No 353
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=39.47 E-value=25 Score=21.21 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.2
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..++++++|+-.|+|.
T Consensus 30 ~~~~G~~~~t~~~IA~~agvs~ 51 (218)
T 3gzi_A 30 FIERPYAQVSIREIASLAGTDP 51 (218)
T ss_dssp HHTSCCSCCCHHHHHHHHTSCT
T ss_pred HHHCCCCcCCHHHHHHHhCCCH
Confidence 4567899999999999999976
No 354
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=39.44 E-value=15 Score=21.52 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=18.3
Q ss_pred HHHhcccccHHHHHHHhCCCH
Q 036949 10 LMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 10 i~~AY~sIs~~~~a~~Lgls~ 30 (81)
.++-|..+++.++|+-.|+|.
T Consensus 26 ~~~G~~~~tv~~Ia~~agvs~ 46 (177)
T 3kkc_A 26 QENDYSKITVQDVIGLANVGR 46 (177)
T ss_dssp TTSCTTTCCHHHHHHHHCCCH
T ss_pred HhCChhHhhHHHHHHHhCCcH
Confidence 356799999999999999976
No 355
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=39.38 E-value=35 Score=20.00 Aligned_cols=22 Identities=18% Similarity=0.058 Sum_probs=19.1
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..++++++|+-.|+|.
T Consensus 20 ~~~~G~~~~s~~~IA~~agvs~ 41 (180)
T 2fd5_A 20 LLERGAVEPSVGEVMGAAGLTV 41 (180)
T ss_dssp HHHHTTTSCCHHHHHHHTTCCG
T ss_pred HHHhCcccCCHHHHHHHhCCCc
Confidence 4568899999999999999965
No 356
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=39.12 E-value=25 Score=21.95 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.1
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+-++-|..+++.++|+-+|++.
T Consensus 16 ~~~~G~~~~s~~~IA~~~Gvs~ 37 (207)
T 2xpw_A 16 LNETGIDGLTTRKLAQKLGIEQ 37 (207)
T ss_dssp HHHHHHHHCCHHHHHHHHTCCH
T ss_pred HHhcCcccCCHHHHHHHhCCCc
Confidence 3467899999999999999976
No 357
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=39.10 E-value=34 Score=20.71 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=28.1
Q ss_pred HHhcccccHHHHHHHhCCCHHHHHHHHHhcCCeEeCCC
Q 036949 11 MSAYSTISTQDTALFLGMNEDDAAYYVQQQGWTLDPAS 48 (81)
Q Consensus 11 ~~AY~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d~~~ 48 (81)
..-|=+.+++++|..||++.+++.+..... .++||.|
T Consensus 34 ~~GYL~~~l~eia~~l~~~~~eve~vL~~i-Q~~dP~G 70 (130)
T 2k9m_A 34 EKGFLSKSVEEISDVLRCSVEELEKVRQKV-LRLEPLG 70 (130)
T ss_dssp TTSSBSSCHHHHHHHTTCCHHHHHHHHHHH-HTSSSCC
T ss_pred CCCCCCCCHHHHHHHcCCCHHHHHHHHHHH-hcCCCCc
Confidence 356889999999999999999987765432 2467665
No 358
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=39.01 E-value=42 Score=17.47 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=23.0
Q ss_pred HHHHHHhcc------cccHHHHHHHhCCCHHHHHHHHHh
Q 036949 7 FQLLMSAYS------TISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 7 ~~li~~AY~------sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
...++..|. .-....+|..|||++..+.-+...
T Consensus 19 ~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqN 57 (70)
T 2da1_A 19 LRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRN 57 (70)
T ss_dssp HHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhh
Confidence 445555552 223567999999999999888764
No 359
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=38.89 E-value=59 Score=20.49 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=28.3
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHH---HHHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAY---YVQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~---~~~~~GW~~ 44 (81)
.++..+.. ...++..++|..+|++..-+-. -..++||..
T Consensus 52 ~iL~~L~~-~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~ 93 (207)
T 2fxa_A 52 HILWIAYQ-LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLR 93 (207)
T ss_dssp HHHHHHHH-HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34555544 3679999999999998766644 455679985
No 360
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=38.72 E-value=31 Score=21.69 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.3
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..++++++|+-.|+|.
T Consensus 36 f~~~G~~~~s~~~IA~~agvs~ 57 (231)
T 2zcx_A 36 GTERGIREITLTDIAATVGMHK 57 (231)
T ss_dssp HHHHCSTTCCHHHHHHHHTSCH
T ss_pred HHhCCcccCCHHHHHHHhCCCH
Confidence 4567899999999999999976
No 361
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=38.72 E-value=47 Score=20.00 Aligned_cols=28 Identities=18% Similarity=0.113 Sum_probs=22.2
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|...+++++|+-.|+|.
T Consensus 14 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvsk 46 (200)
T 2hyj_A 14 RGRILGRAAEIASEEGLDGITIGRLAEELEMSK 46 (200)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCh
Confidence 455554 4567899999999999999976
No 362
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=38.63 E-value=48 Score=17.99 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=23.1
Q ss_pred cccHHHHHHHhCCCHHH-H---HHHHHhcCCeE
Q 036949 16 TISTQDTALFLGMNEDD-A---AYYVQQQGWTL 44 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e-~---~~~~~~~GW~~ 44 (81)
.++..++|..+|++..- + .+-..++||..
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 69999999999998877 5 44445679885
No 363
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=38.53 E-value=42 Score=17.86 Aligned_cols=26 Identities=12% Similarity=0.010 Sum_probs=22.3
Q ss_pred cHHHHHHHhCCCHHHHHHHHHhcCCe
Q 036949 18 STQDTALFLGMNEDDAAYYVQQQGWT 43 (81)
Q Consensus 18 s~~~~a~~Lgls~~e~~~~~~~~GW~ 43 (81)
+...+|.-||++..-+-+++....|.
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~~~r~i 40 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLKRGLPV 40 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHHTTCCC
T ss_pred CHHHHHHHhCCCHHHHHHHHHhcCCc
Confidence 88999999999999999988765544
No 364
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=38.50 E-value=28 Score=21.61 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=19.1
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 57 f~e~G~~~~t~~~IA~~aGvs~ 78 (236)
T 3q0w_A 57 LEDRPLADISVDDLAKGAGISR 78 (236)
T ss_dssp HHHSCGGGCCHHHHHHHHTCCH
T ss_pred HHHcCcccCCHHHHHHHhCCcH
Confidence 4466899999999999999977
No 365
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=38.38 E-value=50 Score=18.06 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=21.2
Q ss_pred cccHHHHHHHhCCCHHHHHHHHHh
Q 036949 16 TISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
..++.++|..+|+|..-+-.+...
T Consensus 23 g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 23 GASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHCcCHHHHHHHHHH
Confidence 579999999999999988888764
No 366
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=38.34 E-value=35 Score=17.08 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=16.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHh
Q 036949 19 TQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~ 39 (81)
...+|.-|||++..+.-+...
T Consensus 30 r~~La~~l~l~~~qV~~WFqN 50 (58)
T 1ig7_A 30 RAEFSSSLSLTETQVKIWFQN 50 (58)
T ss_dssp HHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHhhhhhhH
Confidence 456899999999988877654
No 367
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=38.27 E-value=35 Score=16.91 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHh
Q 036949 19 TQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~ 39 (81)
...+|.-|||++..+.-+...
T Consensus 32 r~~La~~l~l~~~qV~~WFqN 52 (58)
T 3rkq_A 32 RDQLASVLKLTSTQVKIWFQN 52 (58)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHhhHH
Confidence 456899999999988877664
No 368
>4f3q_A Transcriptional regulatory protein CBU_1566; YEBC family; 2.15A {Coxiella burnetii}
Probab=38.10 E-value=27 Score=23.70 Aligned_cols=44 Identities=11% Similarity=0.025 Sum_probs=28.4
Q ss_pred HHHHHHhcCCeEeCCCceEeecCCCCcccCCCChhHHHHHHhHHHhhcC
Q 036949 33 AAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPSKMQCLTEYVFHLEH 81 (81)
Q Consensus 33 ~~~~~~~~GW~~d~~~~~~~p~~~~~~~~~~~~~~~l~~Lt~~v~~LE~ 81 (81)
+.+...+.|+++.......+|.++.. +++++.+++-+++--||.
T Consensus 186 V~~aL~~~g~~~~~aei~~~P~~~v~-----l~~e~~~~~~klid~Led 229 (247)
T 4f3q_A 186 IRNAMKAADLNPSHAEVTVLASTEVG-----LDKDSAEQMLRLTEMLED 229 (247)
T ss_dssp HHHHHHHTTCCCSEEEEEEEESSCEE-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCeeEEEEEEecCCccc-----cCHHHHHHHHHHHHHhhc
Confidence 34445566887765555556653221 267888999999888874
No 369
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=38.04 E-value=32 Score=21.18 Aligned_cols=28 Identities=7% Similarity=0.075 Sum_probs=23.2
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ +.++-|..+++.++|.-.|+|.
T Consensus 16 R~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~ 48 (208)
T 3v6g_A 16 RQAIVEAAERVIARQGLGGLSHRRVAAEANVPV 48 (208)
T ss_dssp HHHHHHHHHHHHHHHCTTCCCHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCc
Confidence 555655 5678899999999999999976
No 370
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=38.02 E-value=34 Score=20.51 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=22.5
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|...|++++|+-.|+|.
T Consensus 12 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~ 44 (194)
T 2nx4_A 12 RRSITAAAWRLIAARGIEAANMRDIATEAGYTN 44 (194)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCc
Confidence 445554 5577899999999999999976
No 371
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.88 E-value=33 Score=17.98 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHhcCCeEeCCCceE
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQGWTLDPASRML 51 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~GW~~d~~~~~~ 51 (81)
+..+..| ||+.+++.......+|.++..-.++
T Consensus 13 v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L 44 (63)
T 2dak_A 13 VTTIVSM-GFSRDQALKALRATNNSLERAVDWI 44 (63)
T ss_dssp HHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3445554 8888888887777788665443333
No 372
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=37.88 E-value=38 Score=20.33 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
...+-|..++++++|+-.|+|.
T Consensus 23 f~~~G~~~~s~~~Ia~~Agvsk 44 (197)
T 2f07_A 23 ISEKGLDKASISDIVKKAGTAQ 44 (197)
T ss_dssp HHHHCTTTCCHHHHHHHHTSCH
T ss_pred HHHhCcccCCHHHHHHHhCCCc
Confidence 4567899999999999999987
No 373
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=37.72 E-value=34 Score=17.30 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=16.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHh
Q 036949 19 TQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~ 39 (81)
...+|..|||++..+.-+...
T Consensus 35 r~~La~~~~l~~~qV~~WFqN 55 (61)
T 1akh_A 35 KEEVAKKCGITPLQVRVWFIN 55 (61)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 456899999999988877654
No 374
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=37.66 E-value=53 Score=20.53 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcc----cccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 3 TKRMFQLLMSAYS----TISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 3 R~~~~~li~~AY~----sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
+.+++..|..... ..+..++|..||++..-+... ..+.|+-.
T Consensus 7 q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~ 55 (196)
T 3k2z_A 7 QRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIE 55 (196)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEE
Confidence 3456666654432 489999999999987655444 34568865
No 375
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=37.62 E-value=49 Score=17.74 Aligned_cols=35 Identities=3% Similarity=0.242 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH
Q 036949 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 4 ~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
+++++-|-..=.-|.++.+++.+|++.+++.....
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~Lr 47 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLE 47 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHH
Confidence 45677777777889999999999999999876654
No 376
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=37.61 E-value=37 Score=20.52 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=22.4
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|...+++++|+-.|+|.
T Consensus 11 r~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~ 43 (203)
T 2np5_A 11 PERLAAALFDVAAESGLEGASVREVAKRAGVSI 43 (203)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHhChhhccHHHHHHHhCCCH
Confidence 455554 4567899999999999999876
No 377
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=37.58 E-value=47 Score=20.56 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=19.4
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 29 ~~~~G~~~~s~~~IA~~agvs~ 50 (216)
T 2oi8_A 29 IATAGASALSLNAIAKRMGMSG 50 (216)
T ss_dssp HHHHCTTSCCHHHHHHHTTCCH
T ss_pred HHhcCcccCCHHHHHHHhCCCH
Confidence 4467899999999999999987
No 378
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=37.47 E-value=35 Score=17.29 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|..|||++..+.-+...+
T Consensus 29 r~~La~~l~l~~~qV~~WFqNr 50 (60)
T 3a02_A 29 REELAMKIGLTEARIQVWFQNR 50 (60)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHhhhh
Confidence 5578999999999998877643
No 379
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.42 E-value=26 Score=18.86 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=23.9
Q ss_pred HHHHHHHhC-CCHHHHHHHHHhcCCeEeCC
Q 036949 19 TQDTALFLG-MNEDDAAYYVQQQGWTLDPA 47 (81)
Q Consensus 19 ~~~~a~~Lg-ls~~e~~~~~~~~GW~~d~~ 47 (81)
+..++...| -+.+.+..|...-+|.++..
T Consensus 22 i~qF~~ITg~~d~~~A~~~Le~~~WnLe~A 51 (67)
T 2dam_A 22 LLQFQDLTGIESMDQCRHTLEQHNWNIEAA 51 (67)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHcCCCHHHH
Confidence 667888999 48888888888889998754
No 380
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=37.42 E-value=30 Score=20.73 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=18.6
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+..+-|..+++.++|+-.|+|.
T Consensus 32 f~~~G~~~~t~~~IA~~agvs~ 53 (216)
T 3qqa_A 32 FLTKGYQETSLSDIIKLSGGSY 53 (216)
T ss_dssp HHHTCTTTCCHHHHHHHHTTSC
T ss_pred HHHcChhhCCHHHHHHHhCCCH
Confidence 3467899999999999999865
No 381
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=37.17 E-value=79 Score=20.91 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeEe
Q 036949 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTLD 45 (81)
Q Consensus 4 ~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~d 45 (81)
-+++.++.. ...++..++|..||++..-+-..+ .+.||-.-
T Consensus 155 ~~IL~~L~~-~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r 198 (244)
T 2wte_A 155 MKLLNVLYE-TKGTGITELAKMLDKSEKTLINKIAELKKFGILTQ 198 (244)
T ss_dssp HHHHHHHHH-HTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 456666653 468999999999999887765554 46699863
No 382
>2lc0_A Putative uncharacterized protein TB39.8; FHAA, kinase substrate, protein binding; NMR {Mycobacterium tuberculosis}
Probab=37.13 E-value=47 Score=20.25 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=23.4
Q ss_pred cccHHHHHHHhCCCH-------HHHHHHHHhcCCeEeCCCceEe
Q 036949 16 TISTQDTALFLGMNE-------DDAAYYVQQQGWTLDPASRMLT 52 (81)
Q Consensus 16 sIs~~~~a~~Lgls~-------~e~~~~~~~~GW~~d~~~~~~~ 52 (81)
.++.++...+-.... +.+.+++.++||++...-.+.+
T Consensus 65 ~Ls~~D~~~l~~~~~~l~~el~~~l~~~a~~qgy~~~G~v~V~f 108 (132)
T 2lc0_A 65 TLGVHDFEKLGADPELKSTGFARDLADYIQEQGWQTYGDVVVRF 108 (132)
T ss_dssp EEEHHHHHHHCSCSHHHHHHHHHHHHHHHHHHTCBCSSCCEEEE
T ss_pred EeCHHHHHHHHhhhHHHHHHHHHHHHHHHHHCCCeecCCeEEEE
Confidence 356666666666633 4457788899999964433333
No 383
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=37.04 E-value=24 Score=21.45 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=32.0
Q ss_pred cccccHHHHHHHhCC-CHHHHHHHHHhcCCeEeCCCceEeecCCCCcccCCCChhHHHHHHhHH
Q 036949 14 YSTISTQDTALFLGM-NEDDAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPSKMQCLTEYV 76 (81)
Q Consensus 14 Y~sIs~~~~a~~Lgl-s~~e~~~~~~~~GW~~d~~~~~~~p~~~~~~~~~~~~~~~l~~Lt~~v 76 (81)
|++|.++..+=.--+ +.+...++....||+.+.+ .+++|... ...+|+++-+++
T Consensus 56 yRkIRl~N~~f~~~V~~~~Ga~e~L~a~GF~~~~~-~lvlp~~~--------~~~~l~~~~d~L 110 (124)
T 2d5u_A 56 YRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGET-HLIFPKKA--------SVEQLQKIRDLI 110 (124)
T ss_dssp GSEEECCCHHHHHTTSSSTTHHHHHHHHTCBCCSS-EEECCTTS--------CHHHHHHHHHHH
T ss_pred ceeeecCCHHHHHHhcCCccHHHHHHHcccccCCC-eeecCCCC--------CHHHHHHHHHHH
Confidence 667766653322222 3445577888899998754 47776421 345666666554
No 384
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=37.02 E-value=32 Score=21.02 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=18.9
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..++++++|+-.|+|.
T Consensus 35 f~e~G~~~~s~~~IA~~AGVsk 56 (207)
T 3bjb_A 35 ATEKELARVQMHEVAKRAGVAI 56 (207)
T ss_dssp HHHSCGGGCCHHHHHHHHTCCH
T ss_pred HHHcCcccCCHHHHHHHhCCCH
Confidence 4457899999999999999876
No 385
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=36.99 E-value=37 Score=17.26 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=16.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHh
Q 036949 19 TQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~ 39 (81)
...+|..|||++..+.-+...
T Consensus 33 r~~La~~l~l~~~qV~~WFqN 53 (61)
T 2hdd_A 33 RQQLSSELGLNEAQIKIWFKN 53 (61)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHhhh
Confidence 456899999999998877654
No 386
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=36.97 E-value=34 Score=20.59 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.2
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
...+-|..+|++++|+-.|+|.
T Consensus 18 f~~~Gy~~~s~~~IA~~Agvsk 39 (202)
T 2id6_A 18 FGKKGYDRATTDEIAEKAGVAK 39 (202)
T ss_dssp HHHHHHHHCCHHHHHHHHTCCT
T ss_pred HHHcCcccCCHHHHHHHhCCCH
Confidence 4568899999999999999975
No 387
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=36.91 E-value=39 Score=17.13 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=18.0
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|++..-+..+-.
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 457888899999988877765543
No 388
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=36.87 E-value=32 Score=21.49 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=18.6
Q ss_pred HHHH-hcccccHHHHHHHhCCCH
Q 036949 9 LLMS-AYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~-AY~sIs~~~~a~~Lgls~ 30 (81)
+.++ -|..+++.++|+-+|+|.
T Consensus 18 ~~~~~G~~~~s~~~IA~~aGvs~ 40 (220)
T 1z0x_A 18 LEKSPTLEQLSMRKVAKQLGVQA 40 (220)
T ss_dssp HHHSCCGGGCCHHHHHHHHTSCH
T ss_pred HHhcCCcccCCHHHHHHHcCCCH
Confidence 3456 899999999999999976
No 389
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=36.77 E-value=14 Score=22.68 Aligned_cols=33 Identities=9% Similarity=0.119 Sum_probs=22.4
Q ss_pred hcccccHHHHHHHhCC--CHHHHHHHHHhcCCeEe
Q 036949 13 AYSTISTQDTALFLGM--NEDDAAYYVQQQGWTLD 45 (81)
Q Consensus 13 AY~sIs~~~~a~~Lgl--s~~e~~~~~~~~GW~~d 45 (81)
.|.++|.++=..-.++ ..+.+.++|.+.||++.
T Consensus 9 ~Y~RvSt~~q~~~~sl~~Q~~~l~~~a~~~g~~i~ 43 (167)
T 3guv_A 9 LYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIV 43 (167)
T ss_dssp EEEECSSCHHHHGGGHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCcccccCCCHHHHHHHHHHHHHhCCCEEE
Confidence 4777776654443333 34678899999999973
No 390
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=36.75 E-value=32 Score=20.62 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=19.0
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..+++.++|+-.|+|.
T Consensus 26 f~~~G~~~~t~~~IA~~agvs~ 47 (217)
T 3nrg_A 26 FAQNDYDSVSINRITERAGIAK 47 (217)
T ss_dssp HHHSCGGGCCHHHHHHHHTCCT
T ss_pred HHhcCcccCCHHHHHHHhCCcH
Confidence 4578899999999999999865
No 391
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.65 E-value=37 Score=17.81 Aligned_cols=35 Identities=14% Similarity=0.164 Sum_probs=24.4
Q ss_pred HHHHHHHhcccc------cHHHHHHHhCCCHHHHHHHHHhc
Q 036949 6 MFQLLMSAYSTI------STQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 6 ~~~li~~AY~sI------s~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
-...+++.|..- ....+|..|||++..+.-+...+
T Consensus 14 Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNR 54 (64)
T 2e19_A 14 LLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKM 54 (64)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcc
Confidence 345566666542 34568999999999998877643
No 392
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=36.50 E-value=60 Score=18.51 Aligned_cols=31 Identities=13% Similarity=-0.032 Sum_probs=22.9
Q ss_pred ccc-cHHHHHHHhCCCHHH---HHHHHHhcCCeEe
Q 036949 15 STI-STQDTALFLGMNEDD---AAYYVQQQGWTLD 45 (81)
Q Consensus 15 ~sI-s~~~~a~~Lgls~~e---~~~~~~~~GW~~d 45 (81)
+.+ +..++|..+|+|..- +.....+.|+-.-
T Consensus 31 ~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~ 65 (113)
T 3tqn_A 31 EMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEK 65 (113)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 456 788999999998654 4455667899753
No 393
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=36.48 E-value=37 Score=17.19 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=16.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHh
Q 036949 19 TQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~ 39 (81)
...+|.-|||++..+.-+...
T Consensus 31 r~~La~~l~l~~~qV~~WFqN 51 (60)
T 1jgg_A 31 RCELAAQLNLPESTIKVWFQN 51 (60)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHhhHH
Confidence 456899999999988877654
No 394
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=36.33 E-value=38 Score=17.69 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=18.9
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|++..-+-.+-.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHc
Confidence 457888999999998887776654
No 395
>1msk_A Cobalamin-dependent methionine synthase; methyltransferase, transferase, methionine biosynthesis, vitamin B12; HET: SAM; 1.80A {Escherichia coli K12} SCOP: d.173.1.1
Probab=36.27 E-value=8.6 Score=27.30 Aligned_cols=29 Identities=14% Similarity=0.404 Sum_probs=22.5
Q ss_pred HHHHhCC---CHHHHHHHHHhcCCeEeCCCce
Q 036949 22 TALFLGM---NEDDAAYYVQQQGWTLDPASRM 50 (81)
Q Consensus 22 ~a~~Lgl---s~~e~~~~~~~~GW~~d~~~~~ 50 (81)
-|+|+++ +.+++.+|+..+||.+...-+.
T Consensus 290 ea~YF~vg~i~~dq~~dya~rkg~~~~~~~~~ 321 (331)
T 1msk_A 290 DSKYYAVAQIQRDQVEDYARRKGMSVTEVERW 321 (331)
T ss_dssp TCCCCCCCCBCHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCeeCCCccCHHHHHHHHHHcCCCHHHHHHH
Confidence 4677777 7899999999999998643333
No 396
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=36.11 E-value=37 Score=17.38 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|..|||++..+..+...+
T Consensus 36 r~~La~~~~L~~~qV~~WFqNr 57 (64)
T 1du6_A 36 KEELAKKCGITVSQVSNWFGNK 57 (64)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHH
Confidence 4568999999999998887643
No 397
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=36.06 E-value=40 Score=20.39 Aligned_cols=31 Identities=6% Similarity=0.110 Sum_probs=23.8
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHH---hcCCe
Q 036949 13 AYSTISTQDTALFLGMNEDDAAYYVQ---QQGWT 43 (81)
Q Consensus 13 AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~ 43 (81)
...-++++.+|..+|+++.++..... ++|.-
T Consensus 48 g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI 81 (135)
T 2v79_A 48 GSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFL 81 (135)
T ss_dssp TCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 34668899999999999988876655 45765
No 398
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=35.92 E-value=9.5 Score=26.91 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCHHHHHHHH-HhcCCeEeCC
Q 036949 28 MNEDDAAYYV-QQQGWTLDPA 47 (81)
Q Consensus 28 ls~~e~~~~~-~~~GW~~d~~ 47 (81)
++++|+.+.+ +++||++-+|
T Consensus 138 y~~~ea~~~~~~~~~~~~~ed 158 (317)
T 3kzf_A 138 YTEQEAKDLMAANPGKILRED 158 (317)
T ss_dssp ---------------------
T ss_pred CCHHHHHHHHHhccCCeEeec
Confidence 4788999888 8889998555
No 399
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=35.86 E-value=18 Score=16.77 Aligned_cols=11 Identities=27% Similarity=0.298 Sum_probs=8.7
Q ss_pred HHHHHhHHHhh
Q 036949 69 MQCLTEYVFHL 79 (81)
Q Consensus 69 l~~Lt~~v~~L 79 (81)
=+.||++++|+
T Consensus 7 nqmltdilsfm 17 (33)
T 3c0t_B 7 NQMLTDILSFM 17 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35699999886
No 400
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=35.81 E-value=36 Score=17.29 Aligned_cols=24 Identities=13% Similarity=0.153 Sum_probs=19.0
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|++..-+..+-.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHC
Confidence 457889999999999887776544
No 401
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=35.54 E-value=40 Score=16.91 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=18.7
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|++..-+..+-.
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 467888999999998877766543
No 402
>2o2k_A Methionine synthase; C-shaped, twisted anti-parallel beta sheet, beta-meander region, transferase; 1.60A {Homo sapiens}
Probab=35.46 E-value=9 Score=27.50 Aligned_cols=33 Identities=9% Similarity=0.251 Sum_probs=25.3
Q ss_pred HHHHhCC---CHHHHHHHHHhcCCeEeCCCceEeec
Q 036949 22 TALFLGM---NEDDAAYYVQQQGWTLDPASRMLTVK 54 (81)
Q Consensus 22 ~a~~Lgl---s~~e~~~~~~~~GW~~d~~~~~~~p~ 54 (81)
-|+|+++ +.+++.+|+..+||.++..-+.+-|.
T Consensus 301 ea~YF~vgki~~dQ~~dya~rkg~~~~~~~~wl~~~ 336 (355)
T 2o2k_A 301 KSKYFAVGKISKDQVEDYALRKNISVAEVEKWLGPI 336 (355)
T ss_dssp TCCCCCCCCBCHHHHHHHHHHHTCCHHHHHHHTGGG
T ss_pred CCCeeCCCcccHHHHHHHHHHcCCCHHHHHHHhhhh
Confidence 4678777 78999999999999987554554444
No 403
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=35.24 E-value=27 Score=22.99 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=28.2
Q ss_pred HHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeEe
Q 036949 6 MFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTLD 45 (81)
Q Consensus 6 ~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~d 45 (81)
|+.++...-..+++.++|+.+|++..-+-.+. .+.||-.-
T Consensus 28 iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~ 70 (260)
T 2o0y_A 28 LLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTS 70 (260)
T ss_dssp HHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 33344433457999999999999887765554 46799853
No 404
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=35.23 E-value=39 Score=20.70 Aligned_cols=22 Identities=0% Similarity=0.022 Sum_probs=19.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..+++.++|+-.|+|.
T Consensus 48 f~~~G~~~~t~~~IA~~AGvs~ 69 (221)
T 3g7r_A 48 FYAEGIHSVGIDRITAEAQVTR 69 (221)
T ss_dssp HHHHCSTTSCHHHHHHHHTCCH
T ss_pred HHHhCcccCCHHHHHHHhCCCH
Confidence 5677899999999999999976
No 405
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=34.87 E-value=46 Score=19.74 Aligned_cols=29 Identities=10% Similarity=0.248 Sum_probs=20.2
Q ss_pred ccccHHHHHHHhCCCHHHHHHH---HHhcCCe
Q 036949 15 STISTQDTALFLGMNEDDAAYY---VQQQGWT 43 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~ 43 (81)
..++..++|..+|++..-+-.. ..++||.
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glV 82 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLV 82 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSB
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCE
Confidence 4589999999999987665444 4567985
No 406
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=34.74 E-value=45 Score=21.96 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=30.8
Q ss_pred HHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeEeCCCce
Q 036949 6 MFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTLDPASRM 50 (81)
Q Consensus 6 ~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~d~~~~~ 50 (81)
|+.++...-..+++.++|+.+|++..-+-.+. .+.||-.-.++.|
T Consensus 26 iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~~~Y 73 (265)
T 2ia2_A 26 VIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVATDGSAF 73 (265)
T ss_dssp HHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESSSEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCEE
Confidence 44444443457999999999999888765554 4679986534333
No 407
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=34.73 E-value=47 Score=20.23 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=22.3
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ...+-|...|++++|+-.|+|.
T Consensus 11 r~~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~ 43 (209)
T 2gfn_A 11 RRALADAVLALIAREGISAVTTRAVAEESGWST 43 (209)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCc
Confidence 455554 4567899999999999999876
No 408
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=34.65 E-value=75 Score=20.34 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeE
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTL 44 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~ 44 (81)
.|-+|+.++. ....+..+++..||+|..-+-... .+.||..
T Consensus 16 ~rl~IL~~L~--~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~ 59 (202)
T 2p4w_A 16 TRRRILFLLT--KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIE 59 (202)
T ss_dssp HHHHHHHHHH--HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceE
Confidence 4677888884 578999999999999887765554 4569875
No 409
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=34.59 E-value=38 Score=17.82 Aligned_cols=24 Identities=13% Similarity=-0.003 Sum_probs=18.5
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|+|..-+..+-.
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~ 45 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIER 45 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 457888899999998887776543
No 410
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=34.56 E-value=37 Score=17.30 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=19.1
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|+|..-+..+..
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 457889999999999887776654
No 411
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=34.56 E-value=65 Score=18.30 Aligned_cols=39 Identities=10% Similarity=0.107 Sum_probs=27.7
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCH---HHHHHHHHhcCCeE
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNE---DDAAYYVQQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~---~e~~~~~~~~GW~~ 44 (81)
.++..+.. ...++..++|..+|++. ..+.+-..++||..
T Consensus 41 ~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 82 (142)
T 2bv6_A 41 LVLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIK 82 (142)
T ss_dssp HHHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 34555543 35799999999999965 44555566789985
No 412
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
Probab=34.47 E-value=1.3e+02 Score=23.55 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=28.0
Q ss_pred cccHHHHHHHhCC--CHHHHHHHHHhcCCeEeCC
Q 036949 16 TISTQDTALFLGM--NEDDAAYYVQQQGWTLDPA 47 (81)
Q Consensus 16 sIs~~~~a~~Lgl--s~~e~~~~~~~~GW~~d~~ 47 (81)
.++.+.+.++||+ +.+++.+..+..|-++..+
T Consensus 405 ~l~~~~i~~~lG~~i~~~~i~~iL~~Lg~~v~~~ 438 (785)
T 1b7y_B 405 PFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGE 438 (785)
T ss_dssp EECHHHHHHHHTCCCCHHHHHHHHHHTTCEEESS
T ss_pred EecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEeC
Confidence 4678889999998 8999999999999999644
No 413
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=34.29 E-value=22 Score=19.31 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=20.0
Q ss_pred cHHHHHHHhCCCHHHHHHHHH---hcCCe
Q 036949 18 STQDTALFLGMNEDDAAYYVQ---QQGWT 43 (81)
Q Consensus 18 s~~~~a~~Lgls~~e~~~~~~---~~GW~ 43 (81)
+.+++....|+|++.+.+... +-||-
T Consensus 38 ~~~eL~~i~gise~kA~~ii~aAr~~~w~ 66 (70)
T 1wcn_A 38 GIDDLADIEGLTDEKAGALIMAARNICWF 66 (70)
T ss_dssp CHHHHHTSSSCCHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHccCCCHHHHHHHHHHHHHccCc
Confidence 788899999999888766644 23786
No 414
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=34.05 E-value=40 Score=19.12 Aligned_cols=26 Identities=4% Similarity=0.037 Sum_probs=21.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc--CCeE
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ--GWTL 44 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~--GW~~ 44 (81)
...+|..|||++.++.-+.+.+ .|.-
T Consensus 41 r~~LA~~lgLte~qVkvWFqNRR~k~rk 68 (89)
T 2ecb_A 41 LNRLRAQTKLTRREIDAWFTEKKKSKAL 68 (89)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCcChHHCeecccccchHHHH
Confidence 4458999999999999998865 5754
No 415
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=33.97 E-value=42 Score=20.91 Aligned_cols=32 Identities=25% Similarity=0.193 Sum_probs=24.0
Q ss_pred HHHHhcccccHHHHHHHhCCCH----------HHHHHHHHhc
Q 036949 9 LLMSAYSTISTQDTALFLGMNE----------DDAAYYVQQQ 40 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~----------~e~~~~~~~~ 40 (81)
+.++-|..+++.++|+-+|++. +++...+..+
T Consensus 38 ~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~~K~~L~~a~~~~ 79 (211)
T 3fiw_A 38 LDEVGLDGVSTRRLAKRLGVEQPSLYWYFRTKRDLLTAMAQA 79 (211)
T ss_dssp HHHHCGGGCCHHHHHHHHTSCTHHHHTTCSSHHHHHHHHHHH
T ss_pred HHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHH
Confidence 4457899999999999999865 5555555544
No 416
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=33.90 E-value=40 Score=20.62 Aligned_cols=21 Identities=24% Similarity=0.099 Sum_probs=16.6
Q ss_pred ccHHHHHHHhCCCHHHHHHHH
Q 036949 17 ISTQDTALFLGMNEDDAAYYV 37 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~ 37 (81)
=+++++|..+|++++.+.+-+
T Consensus 96 dTleeLA~~~gid~~~L~~TV 116 (160)
T 2lfc_A 96 GSLESAAEQAGIVVDELVQTV 116 (160)
T ss_dssp SSHHHHHHHHTCCHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 368999999999987765443
No 417
>2es9_A Putative cytoplasmic protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.00A {Salmonella typhimurium} SCOP: a.247.1.1 PDB: 2jn8_A
Probab=33.82 E-value=30 Score=20.54 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=16.1
Q ss_pred hCC--CHHHHHHHHHhcCCeE
Q 036949 26 LGM--NEDDAAYYVQQQGWTL 44 (81)
Q Consensus 26 Lgl--s~~e~~~~~~~~GW~~ 44 (81)
||. +.+++..-+.+.||.-
T Consensus 48 lGvPas~~dv~aRg~qegWn~ 68 (115)
T 2es9_A 48 LGVPVSPEVVVARGEQEGWNP 68 (115)
T ss_dssp TTCCCCHHHHHHHHHHTTCCH
T ss_pred cCCCCCHHHHHHhcccccCCh
Confidence 687 7899999999999963
No 418
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=33.82 E-value=55 Score=17.21 Aligned_cols=21 Identities=10% Similarity=0.184 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHh
Q 036949 19 TQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~ 39 (81)
...+|..+||++..+..+...
T Consensus 34 r~~La~~~~L~~~qV~~WFqN 54 (73)
T 1puf_B 34 KEELAKKCGITVSQVSNWFGN 54 (73)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 456899999999999888664
No 419
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=33.81 E-value=48 Score=19.56 Aligned_cols=22 Identities=9% Similarity=0.202 Sum_probs=19.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..++++++|+-.|+|.
T Consensus 20 f~~~G~~~~t~~~IA~~agvs~ 41 (192)
T 2zcm_A 20 FSEKGYDGTTLDDISKSVNIKK 41 (192)
T ss_dssp HHHHCTTTCCHHHHHHHTTCCH
T ss_pred HHHcCcccCCHHHHHHHhCCCh
Confidence 4567899999999999999976
No 420
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=33.73 E-value=47 Score=17.37 Aligned_cols=22 Identities=9% Similarity=0.247 Sum_probs=16.4
Q ss_pred ccccHHHHHHHhCCCHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYY 36 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~ 36 (81)
..++..++|..+|++..-+..+
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~ 45 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNF 45 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHH
Confidence 4578889999999887655444
No 421
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=33.66 E-value=22 Score=20.41 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=22.6
Q ss_pred ccc-cHHHHHHHhCCCHHHHH---HHHHhcCCeE
Q 036949 15 STI-STQDTALFLGMNEDDAA---YYVQQQGWTL 44 (81)
Q Consensus 15 ~sI-s~~~~a~~Lgls~~e~~---~~~~~~GW~~ 44 (81)
..+ +..++|..||+|..-+. ....+.|+..
T Consensus 41 ~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~ 74 (102)
T 2b0l_A 41 EGLLVASKIADRVGITRSVIVNALRKLESAGVIE 74 (102)
T ss_dssp EEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 456 99999999999876554 4455679975
No 422
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=33.66 E-value=44 Score=16.98 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|..|||++..+.-+...+
T Consensus 33 r~~LA~~l~l~~~qV~~WFqNr 54 (62)
T 2vi6_A 33 MQELSSILNLSYKQVKTWFQNQ 54 (62)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHhhHHhHHh
Confidence 4568999999999988877643
No 423
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=33.53 E-value=58 Score=19.40 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
+|.+|+.++. .-.+..++|..||+|..-+..+...
T Consensus 30 ~r~~ii~l~~---~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 30 VRQRIVDLAH---QGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp HHHHHHHHHH---HTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred HHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4667777774 3578999999999999888888764
No 424
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=33.49 E-value=38 Score=20.31 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=17.5
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-| .++++++|+-.|+|.
T Consensus 26 f~~~G~-~~t~~~IA~~agvs~ 46 (196)
T 2qwt_A 26 FAAEGL-GVPMDEIARRAGVGA 46 (196)
T ss_dssp HHHTCT-TSCHHHHHHHTTSCH
T ss_pred HHhcCC-CCCHHHHHHHhCCCH
Confidence 345569 899999999999977
No 425
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=33.47 E-value=56 Score=20.96 Aligned_cols=32 Identities=9% Similarity=0.040 Sum_probs=24.8
Q ss_pred HHHHhcccccHHHHHHHhCCCH----------HHHHHHHHhc
Q 036949 9 LLMSAYSTISTQDTALFLGMNE----------DDAAYYVQQQ 40 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~----------~e~~~~~~~~ 40 (81)
+.++-|..+++.++|+-+|++. +++...+..+
T Consensus 32 ~~e~G~~~~S~~~IA~~aGvs~~tlY~hF~sK~~Ll~av~~~ 73 (243)
T 2g7l_A 32 MRAEGLEKVTMRRLAQELDTGPASLYVYVANTAELHAAVLDA 73 (243)
T ss_dssp HHHHCSSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHHHHH
T ss_pred HHhcCchhcCHHHHHHHHCCChhHHHHHcCCHHHHHHHHHHH
Confidence 4467899999999999999876 5565555544
No 426
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=33.33 E-value=45 Score=17.05 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|.-|||++..+.-+...+
T Consensus 33 r~~LA~~l~l~~~qV~~WFqNr 54 (63)
T 2h1k_A 33 RVELAVMLNLTERHIKIWFQNR 54 (63)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHhhHHHHhh
Confidence 4568999999999988776643
No 427
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=33.30 E-value=45 Score=17.45 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|..|||++..+.-+...+
T Consensus 37 r~~LA~~l~l~~~qV~~WFqNR 58 (70)
T 2cra_A 37 RRKISAATSLSERQITIWFQNR 58 (70)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHhhHhhHhH
Confidence 4568999999999998887754
No 428
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=33.26 E-value=66 Score=17.99 Aligned_cols=40 Identities=5% Similarity=0.021 Sum_probs=29.8
Q ss_pred HHHHHHHHHhcccccHHHHHHHhC----CCHHHHH---HHHHhcCCeE
Q 036949 4 KRMFQLLMSAYSTISTQDTALFLG----MNEDDAA---YYVQQQGWTL 44 (81)
Q Consensus 4 ~~~~~li~~AY~sIs~~~~a~~Lg----ls~~e~~---~~~~~~GW~~ 44 (81)
-.++..+.. ...++..++|..+| ++..-+- +-..++||..
T Consensus 13 ~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~ 59 (123)
T 1okr_A 13 WEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFID 59 (123)
T ss_dssp HHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeE
Confidence 456777766 67899999999999 6665554 4455779985
No 429
>2j0p_A HEMS, hemin transport protein HEMS; conformational changes, HAEM, iron, trans ION transport, proteobacteria, iron transport; HET: HEM 12P; 1.7A {Yersinia enterocolitica} SCOP: e.62.1.1 PDB: 2j0r_A*
Probab=33.23 E-value=80 Score=22.37 Aligned_cols=38 Identities=13% Similarity=0.139 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHhcC
Q 036949 3 TKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQQG 41 (81)
Q Consensus 3 R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~~G 41 (81)
++++.++.. .--.....++|..||+|+.|+....-..+
T Consensus 6 ~~~~~~~~~-~~P~~~~rd~A~~lgvSEaelv~a~~g~~ 43 (345)
T 2j0p_A 6 YEQYLQAKA-DNPGKYARDLATLMGISEAELTHSRVSHD 43 (345)
T ss_dssp HHHHHHHHH-TCTTCCHHHHHHHTTSCHHHHHHHHBTTT
T ss_pred HHHHHHHHH-hCcCCcHHHHHHHcCCCHHHHHHhCCCCc
Confidence 444444443 45578899999999999999887655443
No 430
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=33.13 E-value=55 Score=17.82 Aligned_cols=22 Identities=5% Similarity=0.028 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|..+||+...+..+...+
T Consensus 35 r~~La~~~gLt~~qV~~WFqNr 56 (83)
T 1le8_B 35 LENLMKNTSLSRIQIKNWVAAR 56 (83)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHcccccHHH
Confidence 4568999999999999887643
No 431
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=33.01 E-value=35 Score=20.82 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=18.1
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|...+++++|+-.|+|.
T Consensus 26 r~~Il~aA~~lf~e~G~~~~s~~~IA~~aGvsk 58 (214)
T 2oer_A 26 VASILEAAVQVLASEGAQRFTTARVAERAGVSI 58 (214)
T ss_dssp HHHHHHHHHHC------CCCCHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHhhCcccccHHHHHHHhCCCC
Confidence 455555 4567899999999999999976
No 432
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=32.92 E-value=76 Score=18.58 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=22.3
Q ss_pred HHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH
Q 036949 6 MFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 6 ~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
-+..|+.--.. ....+|+.|||+..++..+-.
T Consensus 15 ~l~~ia~~lg~-dWk~LAr~Lg~s~~~I~~I~~ 46 (118)
T 2of5_H 15 NLLSVAGRLGL-DWPAVALHLGVSYREVQRIRH 46 (118)
T ss_dssp HHHHHHHTCCT-THHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHhh-HHHHHHHHcCCCHHHHHHHHH
Confidence 34444443333 678899999999999877654
No 433
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=32.87 E-value=66 Score=17.85 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=33.1
Q ss_pred hcccccHHHHHHHhCCCHHHHHHHHHh---cCCe---EeCCCceEeecCCC
Q 036949 13 AYSTISTQDTALFLGMNEDDAAYYVQQ---QGWT---LDPASRMLTVKKQP 57 (81)
Q Consensus 13 AY~sIs~~~~a~~Lgls~~e~~~~~~~---~GW~---~d~~~~~~~p~~~~ 57 (81)
.-.-++++++|.-+||+.+++++-+++ .|.- +|-.|.|++-.+.+
T Consensus 18 ~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE 68 (72)
T 1wi9_A 18 KSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSG 68 (72)
T ss_dssp HCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSS
T ss_pred HcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHH
Confidence 345678999999999998888766553 4553 67678888766543
No 434
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=32.81 E-value=43 Score=17.33 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=18.5
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|++..-+..+-.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 367888999999998877766544
No 435
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.79 E-value=43 Score=17.53 Aligned_cols=35 Identities=14% Similarity=0.295 Sum_probs=24.6
Q ss_pred HHHHHHHhcccc------cHHHHHHHhCCCHHHHHHHHHhc
Q 036949 6 MFQLLMSAYSTI------STQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 6 ~~~li~~AY~sI------s~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
-...++..|..- ....+|..|||++..+.-+...+
T Consensus 18 Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 58 (70)
T 2djn_A 18 QLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNK 58 (70)
T ss_dssp HHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344555666442 24578999999999998887654
No 436
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=32.71 E-value=46 Score=19.69 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=17.8
Q ss_pred ccHHHHHHHhCCCHHHHHHHHH
Q 036949 17 ISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~~ 38 (81)
-....+|+.|||+..++..+-.
T Consensus 36 ~~Wk~LAR~LGlse~dId~I~~ 57 (115)
T 2o71_A 36 PEWEPMVLSLGLSQTDIYRCKA 57 (115)
T ss_dssp TTHHHHHHHTTCCHHHHHHHHH
T ss_pred hhHHHHHHHcCCCHHHHHHHHH
Confidence 3567899999999999877654
No 437
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=32.66 E-value=25 Score=19.42 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=18.8
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCeEeCC
Q 036949 20 QDTALFLGMNEDDAAYYVQQQGWTLDPA 47 (81)
Q Consensus 20 ~~~a~~Lgls~~e~~~~~~~~GW~~d~~ 47 (81)
..+.. +||+.++++......+|-++..
T Consensus 34 ~~L~e-MGF~r~~a~~AL~~~~~nve~A 60 (73)
T 1vg5_A 34 QKLVA-MGFDRTQVEVALAAADDDLTVA 60 (73)
T ss_dssp HHHHT-TTCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHhCCCHHHH
Confidence 33444 3779999988888888876543
No 438
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=32.63 E-value=56 Score=21.34 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=29.8
Q ss_pred HHHHHHHhcccccHHHHHHHhCCCHHHHHHHH---HhcCCeEeCCC
Q 036949 6 MFQLLMSAYSTISTQDTALFLGMNEDDAAYYV---QQQGWTLDPAS 48 (81)
Q Consensus 6 ~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~d~~~ 48 (81)
|+.++...=..+++.++|+.+|++..-+-.+. .+.||-.-.++
T Consensus 19 iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~~ 64 (257)
T 2g7u_A 19 VLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSGG 64 (257)
T ss_dssp HHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCC
Confidence 44444444456999999999999887765554 46799864333
No 439
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=32.63 E-value=46 Score=20.50 Aligned_cols=28 Identities=4% Similarity=0.075 Sum_probs=22.1
Q ss_pred HHHHHH-----HHHHhcccccHHHHHHHhCCCH
Q 036949 3 TKRMFQ-----LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 3 R~~~~~-----li~~AY~sIs~~~~a~~Lgls~ 30 (81)
|++|++ ..++-|..++++++|+-.|+|.
T Consensus 37 r~~Il~AA~~lf~~~G~~~~s~~~IA~~AGvs~ 69 (237)
T 3kkd_A 37 RQAILDAAMRLIVRDGVRAVRHRAVAAEAQVPL 69 (237)
T ss_dssp HHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHhcChhhcCHHHHHHHhCCCh
Confidence 455554 4578899999999999999865
No 440
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=32.48 E-value=25 Score=20.63 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=18.0
Q ss_pred cCCeEeCCCceEeecCCCCcc
Q 036949 40 QGWTLDPASRMLTVKKQPLVT 60 (81)
Q Consensus 40 ~GW~~d~~~~~~~p~~~~~~~ 60 (81)
..|+.+++.+++|.++..+-.
T Consensus 77 ~~W~~~s~nr~~F~kr~~Ky~ 97 (100)
T 1wgr_A 77 AAWPVGGDSRFVFRKNFASGP 97 (100)
T ss_dssp TTSCSSSCCEEEECSCCSSSC
T ss_pred hhCccCCCcEEEEecchhccC
Confidence 589999999999999887644
No 441
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=32.36 E-value=51 Score=18.75 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=20.5
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHhcCC
Q 036949 17 ISTQDTALFLGMNEDDAAYYVQQQGW 42 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~~~~GW 42 (81)
.++.++|.++|+|..-+.-|-. .|.
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~-~Gl 27 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDN-IEL 27 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHH-TTS
T ss_pred ccHHHHHHHHCcCHHHHHHHHH-CCC
Confidence 5789999999999999988755 344
No 442
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=32.34 E-value=9.5 Score=23.74 Aligned_cols=28 Identities=7% Similarity=0.335 Sum_probs=0.0
Q ss_pred cccHHHHHHHhCCCHHHHHHH---HHhcCCe
Q 036949 16 TISTQDTALFLGMNEDDAAYY---VQQQGWT 43 (81)
Q Consensus 16 sIs~~~~a~~Lgls~~e~~~~---~~~~GW~ 43 (81)
.++..++|.|||++.+-+-.. ..+.||-
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I 194 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELEREGYI 194 (213)
T ss_dssp -------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCeE
Confidence 577889999999987665443 4456774
No 443
>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=32.34 E-value=1.1e+02 Score=24.08 Aligned_cols=31 Identities=10% Similarity=0.271 Sum_probs=27.4
Q ss_pred cccHHHHHHHhCC--CHHHHHHHHHhcCCeEeC
Q 036949 16 TISTQDTALFLGM--NEDDAAYYVQQQGWTLDP 46 (81)
Q Consensus 16 sIs~~~~a~~Lgl--s~~e~~~~~~~~GW~~d~ 46 (81)
.++.+.+.++||+ +.+++.+..+..|.++..
T Consensus 407 ~l~~~~i~~~lG~~i~~~~i~~iL~~Lgf~v~~ 439 (795)
T 3pco_B 407 TLRRSKLDRLIGHHIADEQVTDILRRLGCEVTE 439 (795)
T ss_dssp EEEHHHHHHHHSSCCCHHHHHHHHHHHTCEEEE
T ss_pred EecHHHHHHHhCCCCCHHHHHHHHHHCCCeEEe
Confidence 4678889999998 899999999999999864
No 444
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=32.34 E-value=29 Score=23.61 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCeEeCCCceEeecCCCCcccCCCChhHHHHHHhHHHhhc
Q 036949 32 DAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPSKMQCLTEYVFHLE 80 (81)
Q Consensus 32 e~~~~~~~~GW~~d~~~~~~~p~~~~~~~~~~~~~~~l~~Lt~~v~~LE 80 (81)
.+.+...+.|+++.......+|.++..- +.++.+++-+++--||
T Consensus 184 ~V~~aL~~~g~~~~~aei~~~P~~~v~l-----~~e~~~~~~klid~Le 227 (249)
T 1kon_A 184 KVRDALEAAGLKADSAEVSMIPSTKADM-----DAETAPKLMRLIDMLE 227 (249)
T ss_dssp HHHHHHHHTTCCCSEEEEEEEESSCCCC-----CTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeeeeeeEECCCCceec-----CHHHHHHHHHHHHHHh
Confidence 3455566678888766666677654322 5566777777777665
No 445
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=32.33 E-value=56 Score=18.57 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=19.4
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHh
Q 036949 17 ISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~~~ 39 (81)
.++.++|.++|+|..-+.-|-..
T Consensus 2 ~~i~e~A~~~gvs~~tLR~ye~~ 24 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHYDDI 24 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHC
Confidence 47889999999999999877553
No 446
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=32.22 E-value=46 Score=17.17 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=16.6
Q ss_pred ccccHHHHHHHhCCCHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYV 37 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~ 37 (81)
..++..++|..+|++..-+..+-
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e 36 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIE 36 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHH
Confidence 46788888888888876665543
No 447
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=32.19 E-value=57 Score=18.84 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=17.3
Q ss_pred ccHHHHHHHhCCCHHHHHHHH
Q 036949 17 ISTQDTALFLGMNEDDAAYYV 37 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~ 37 (81)
-....+|+.|||+..++..+-
T Consensus 30 ~~Wk~LAr~Lg~~~~~I~~ie 50 (110)
T 1wxp_A 30 EQWKILAPYLEMKDSEIRQIE 50 (110)
T ss_dssp TTHHHHTTTTTCCHHHHHHHH
T ss_pred hhHHHHHHHhCCCHHHHHHHH
Confidence 367889999999999987654
No 448
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=32.19 E-value=47 Score=17.77 Aligned_cols=22 Identities=5% Similarity=0.072 Sum_probs=18.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|..|||++..+.-+...+
T Consensus 39 r~~LA~~l~l~e~qVqvWFqNR 60 (72)
T 2cqx_A 39 LKGLSKQLDWSVRKIQCWFRHR 60 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCChhhcchhhhhc
Confidence 5679999999999998887654
No 449
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=32.10 E-value=56 Score=17.27 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=18.8
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHH
Q 036949 14 YSTISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 14 Y~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
...++..++|..+|++..-+..+-.
T Consensus 29 ~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3467888899999998877766544
No 450
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=32.01 E-value=28 Score=21.95 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=18.9
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|++.
T Consensus 56 f~~~G~~~~t~~~IA~~aGvs~ 77 (255)
T 3g1o_A 56 LEDRPLADISVDDLAKGAGISR 77 (255)
T ss_dssp HTTSCGGGCCHHHHHHHHTCCH
T ss_pred HHHcCCccCcHHHHHHHhCCCH
Confidence 3456899999999999999977
No 451
>2gf5_A FADD protein; death domain, death effector domain, apoptosis, death- inducing signaling complex; NMR {Homo sapiens} SCOP: a.77.1.2 a.77.1.4
Probab=31.92 E-value=81 Score=19.95 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=23.9
Q ss_pred HHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHHh
Q 036949 5 RMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 5 ~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~ 39 (81)
..+..|+.--. -....+|+.||++..++..+-.+
T Consensus 99 ~~~~~ia~~lg-~~Wk~Lar~Lgl~~~~I~~I~~~ 132 (191)
T 2gf5_A 99 AAFNVICDNVG-KDWRRLARQLKVSDTKIDSIEDR 132 (191)
T ss_dssp HHHHHHHHSCC-TTHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHccc-hhHHHHHHHcCCCHHHHHHHHHh
Confidence 34455554333 46788999999999998876554
No 452
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=31.87 E-value=69 Score=17.77 Aligned_cols=38 Identities=16% Similarity=0.341 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHh---ccc--ccHHHHHHHhCCCHHHHHHHHHh
Q 036949 2 YTKRMFQLLMSA---YST--ISTQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 2 ~R~~~~~li~~A---Y~s--Is~~~~a~~Lgls~~e~~~~~~~ 39 (81)
++.+++.++-.. |.+ .++..+|.-+|+++.-+..+..+
T Consensus 11 ~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 11 VRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 345555554321 222 68899999999999998888765
No 453
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=31.77 E-value=92 Score=19.20 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=35.0
Q ss_pred HHHHHHHHhcc--cccHHHHHHHhCCCHHHHHHHHH---hcCCeEeC---CCceEeecCC
Q 036949 5 RMFQLLMSAYS--TISTQDTALFLGMNEDDAAYYVQ---QQGWTLDP---ASRMLTVKKQ 56 (81)
Q Consensus 5 ~~~~li~~AY~--sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~d~---~~~~~~p~~~ 56 (81)
+++..++..+. .++..++|..+|+|+.-+.+... +.|+.... .|.+..-++|
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 90 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence 44555665543 58999999999999988777755 45997533 3455444443
No 454
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.58 E-value=49 Score=17.26 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|.-|||++..+.-+...+
T Consensus 37 r~~LA~~l~l~~~qV~~WFqNr 58 (70)
T 2dmu_A 37 REQLARKVHLREEKVEVWFKNR 58 (70)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHeehccccc
Confidence 4568999999999998876643
No 455
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=31.56 E-value=41 Score=21.55 Aligned_cols=33 Identities=6% Similarity=0.111 Sum_probs=24.9
Q ss_pred hcccccHHHHHHHhCCCHHHH---HHHHHhcCCeEe
Q 036949 13 AYSTISTQDTALFLGMNEDDA---AYYVQQQGWTLD 45 (81)
Q Consensus 13 AY~sIs~~~~a~~Lgls~~e~---~~~~~~~GW~~d 45 (81)
.-..++..++|..||++..-+ .+-..++||..-
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r 52 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIK 52 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEE
Confidence 456799999999999976555 444556799864
No 456
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=31.53 E-value=49 Score=17.07 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=23.5
Q ss_pred HHHHHHhcccc------cHHHHHHHhCCCHHHHHHHHHhc
Q 036949 7 FQLLMSAYSTI------STQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 7 ~~li~~AY~sI------s~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...++..|..- ....+|.-|||++..+.-+...+
T Consensus 13 ~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 52 (67)
T 2k40_A 13 IEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNR 52 (67)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhH
Confidence 44555565432 24568999999999998887643
No 457
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=31.38 E-value=49 Score=17.04 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=17.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|.-|||++..+.-+...+
T Consensus 33 r~~La~~l~l~~~qV~~WFqNr 54 (66)
T 1bw5_A 33 KEQLVEMTGLSPRVIRVWFQNK 54 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHhHHH
Confidence 4568999999999998887643
No 458
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=31.28 E-value=49 Score=17.22 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|..|||++..+.-+...+
T Consensus 37 r~~LA~~l~l~~~qV~~WFqNr 58 (70)
T 2da2_A 37 FEQLSNLLNLPTRVIVVWFQNA 58 (70)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHhHHhhHhh
Confidence 4568999999999998877643
No 459
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=31.27 E-value=50 Score=17.25 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|.-|||++..+..+...+
T Consensus 37 r~~La~~l~l~~~qV~~WFqNr 58 (70)
T 2e1o_A 37 RKRLAKMLQLSERQVKTWFQNR 58 (70)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHhhHhhHhh
Confidence 4568999999999988877643
No 460
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=31.26 E-value=49 Score=17.24 Aligned_cols=33 Identities=9% Similarity=0.101 Sum_probs=22.4
Q ss_pred HHHHHHhcccc------cHHHHHHHhCCCHHHHHHHHHh
Q 036949 7 FQLLMSAYSTI------STQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 7 ~~li~~AY~sI------s~~~~a~~Lgls~~e~~~~~~~ 39 (81)
...++..|..- ....+|.-|||++..+.-+...
T Consensus 14 ~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqN 52 (68)
T 1zq3_P 14 IAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKN 52 (68)
T ss_dssp HHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHH
Confidence 44555555442 2456899999999998877654
No 461
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.21 E-value=50 Score=17.64 Aligned_cols=22 Identities=5% Similarity=0.021 Sum_probs=18.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|..|||++..+.-+...+
T Consensus 37 r~~LA~~l~l~~~qV~~WFqNR 58 (75)
T 2da5_A 37 LDRLRSETKMTRREIDSWFSER 58 (75)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHhhHhhHHH
Confidence 4568999999999999887654
No 462
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=31.07 E-value=57 Score=20.30 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=18.9
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+-++-|..+++.++|+-+|++.
T Consensus 17 ~~~~G~~~~s~~~IA~~agvs~ 38 (207)
T 2vpr_A 17 LNEVGIEGLTTRKLAQKIGVEQ 38 (207)
T ss_dssp HHHHHHHHCCHHHHHHHHTCCH
T ss_pred HHhcCcccCCHHHHHHHhCCCh
Confidence 3457899999999999999976
No 463
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=31.03 E-value=94 Score=19.09 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=27.7
Q ss_pred HHHHHHHHhc-ccccHHHHHHHhCCCHHHHHHHH---HhcCCeE
Q 036949 5 RMFQLLMSAY-STISTQDTALFLGMNEDDAAYYV---QQQGWTL 44 (81)
Q Consensus 5 ~~~~li~~AY-~sIs~~~~a~~Lgls~~e~~~~~---~~~GW~~ 44 (81)
+++..++... ..++..++|..+|+|+.-+.+.. .+.|+.-
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~ 59 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLT 59 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSE
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3444555433 35899999999999987666554 4569964
No 464
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=30.93 E-value=23 Score=23.50 Aligned_cols=42 Identities=7% Similarity=0.022 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH---hcCCeEe
Q 036949 2 YTKRMFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ---QQGWTLD 45 (81)
Q Consensus 2 ~R~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~---~~GW~~d 45 (81)
.|.+|+.++.. ..++..++|..+|+|..-+-.... +.|+...
T Consensus 13 ~R~~IL~~L~~--g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 13 VRRDLLSHLTC--MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHHHHTT--TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 47789998874 689999999999999877766544 5688764
No 465
>2xsg_A Ccman5; hydrolase, mannosidase; HET: B3P; 2.00A {Cellulosimicrobium cellulans}
Probab=30.92 E-value=23 Score=27.88 Aligned_cols=50 Identities=16% Similarity=0.112 Sum_probs=37.4
Q ss_pred HHHHHHHhcccccHHHHHHHhCCCHHHHHHHHH-h-cCCe--EeCC---------CceEeecCC
Q 036949 6 MFQLLMSAYSTISTQDTALFLGMNEDDAAYYVQ-Q-QGWT--LDPA---------SRMLTVKKQ 56 (81)
Q Consensus 6 ~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~~~-~-~GW~--~d~~---------~~~~~p~~~ 56 (81)
+.+-++-||.-=.+..+|+.||- .++...|.+ . ++|+ +|++ ..++.|+..
T Consensus 455 vS~TLEYaydD~~iaq~Ak~LGk-~~d~~~y~~Rs~~ny~nlfd~~~~~~~~~~~tgf~~pr~~ 517 (774)
T 2xsg_A 455 PGASVQRGYDQYGLSVIADELGL-TEEAETLREQASWPIEKLTKPGAWTAADGTQVGLLTPRAA 517 (774)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHEEEEEEECTTCCEEEEECCBCT
T ss_pred hhHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhHHHhCCchhccccccCccceeeecCC
Confidence 45678889999999999999994 555676766 4 6787 6666 667777644
No 466
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=30.91 E-value=50 Score=17.20 Aligned_cols=22 Identities=9% Similarity=0.235 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|.-|||++..+.-+...+
T Consensus 32 r~~LA~~l~l~~~qV~~WFqNR 53 (68)
T 1ftt_A 32 REHLASMIHLTPTQVKIWFQNH 53 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHhHHHhHHH
Confidence 4568999999999988876643
No 467
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=30.91 E-value=73 Score=18.79 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=22.8
Q ss_pred ccc-cHHHHHHHhCCCHHH---HHHHHHhcCCeEe
Q 036949 15 STI-STQDTALFLGMNEDD---AAYYVQQQGWTLD 45 (81)
Q Consensus 15 ~sI-s~~~~a~~Lgls~~e---~~~~~~~~GW~~d 45 (81)
..+ +..++|..||+|..- +.......|+..-
T Consensus 26 ~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~ 60 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINPATARNGLTLLVEAGILYK 60 (129)
T ss_dssp SCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 456 789999999998654 4445567799753
No 468
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=30.90 E-value=71 Score=20.35 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=24.9
Q ss_pred HHHHHHHhcccccHHH---HHHHhCCCHHHHHHHHH
Q 036949 6 MFQLLMSAYSTISTQD---TALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 6 ~~~li~~AY~sIs~~~---~a~~Lgls~~e~~~~~~ 38 (81)
++..+-..|.-|+.+. +|..||++..++-..++
T Consensus 30 ~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~~Vat 65 (181)
T 3i9v_2 30 LLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVAS 65 (181)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHHHHHh
Confidence 5566777788887655 89999999988765544
No 469
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=30.86 E-value=43 Score=21.72 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=19.0
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+.++-|..+++.++|+-.|+|.
T Consensus 54 f~e~G~~~~S~~~IA~~AGVs~ 75 (273)
T 3c07_A 54 FQERGYDRTTMRAIAQEAGVSV 75 (273)
T ss_dssp HHHTCSTTCCHHHHHHHHTSCH
T ss_pred HHhCCccccCHHHHHHHHCCCH
Confidence 3457899999999999999977
No 470
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=30.85 E-value=62 Score=17.34 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=18.8
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|++..-+-.+..
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 357888999999998877766654
No 471
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=30.67 E-value=54 Score=17.69 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=16.8
Q ss_pred ccccHHHHHHHhCCCHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYY 36 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~ 36 (81)
..++..++|..+|++..-+..+
T Consensus 21 ~glsq~~lA~~~gis~~~is~~ 42 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSPQTFNTW 42 (94)
T ss_dssp SSSCHHHHHHHHTCCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 4578889999999987666554
No 472
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.67 E-value=51 Score=17.55 Aligned_cols=25 Identities=4% Similarity=0.166 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc--CCe
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ--GWT 43 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~--GW~ 43 (81)
...+|..|||++..+.-+...+ .|.
T Consensus 38 r~~La~~~~l~~~qV~~WFqNrR~k~k 64 (76)
T 2dn0_A 38 VEHLTKVTGLSTREVRKWFSDRRYHCR 64 (76)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCCChHHhhHHhHHHhHHHH
Confidence 4578999999999999887754 454
No 473
>3oep_A Putative uncharacterized protein TTHA0988; KIPI, KIPA, cyclophilin, allophanate hydrolase, structural G unknown function, NPPSFA; 1.75A {Thermus thermophilus} PDB: 3opf_A 3ore_A
Probab=30.63 E-value=50 Score=24.62 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=27.4
Q ss_pred cccccHHHHHHHhCCCHHHHHHHHHhcCCeEe
Q 036949 14 YSTISTQDTALFLGMNEDDAAYYVQQQGWTLD 45 (81)
Q Consensus 14 Y~sIs~~~~a~~Lgls~~e~~~~~~~~GW~~d 45 (81)
|.-=.++++|++.|||.+|+++.-.+.-|.+-
T Consensus 84 Y~g~DL~~vA~~~GLs~~eVI~~Hs~~~y~V~ 115 (494)
T 3oep_A 84 YDGEDLPEVASRLGLSLEAVKALHQKPLYRVY 115 (494)
T ss_dssp CCCTTHHHHHHHHTCCHHHHHHHHHSSCEEEE
T ss_pred cChHHHHHHHHHHCcCHHHHHHHHhCCCeEEE
Confidence 44447889999999999999999999999873
No 474
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=30.60 E-value=47 Score=19.61 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=17.8
Q ss_pred ccHHHHHHHhCCCHHHHHHHHH
Q 036949 17 ISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 17 Is~~~~a~~Lgls~~e~~~~~~ 38 (81)
-....+|+.|||+..++..+-.
T Consensus 36 ~~Wk~LAR~LGlse~dId~I~~ 57 (114)
T 2of5_A 36 PEWEPMVLSLGLSQTDIYRCKA 57 (114)
T ss_dssp STHHHHHHTTTCCHHHHHHHHH
T ss_pred hhHHHHHHHcCCCHHHHHHHHH
Confidence 3567899999999999877654
No 475
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=30.39 E-value=43 Score=20.79 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=19.1
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
..++-|..+++.++|+-.|++.
T Consensus 20 ~~~~G~~~~tv~~Ia~~agvs~ 41 (213)
T 3ni7_A 20 AAHTSWEAVRLYDIAARLAVSL 41 (213)
T ss_dssp HHHSCSTTCCHHHHHHHTTSCH
T ss_pred HHHcCccccCHHHHHHHhCCCH
Confidence 4467899999999999999976
No 476
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=30.37 E-value=50 Score=17.43 Aligned_cols=35 Identities=14% Similarity=0.207 Sum_probs=24.7
Q ss_pred HHHHHHHhccc------c-cHHHHHHHhCCCHHHHHHHHHhc
Q 036949 6 MFQLLMSAYST------I-STQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 6 ~~~li~~AY~s------I-s~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
-...++++|.. . ....+|..|||++..+.-+...+
T Consensus 13 Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNR 54 (73)
T 2hi3_A 13 QVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQR 54 (73)
T ss_dssp HHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34556666653 1 25679999999999998887644
No 477
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=30.34 E-value=61 Score=19.78 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=18.8
Q ss_pred HHHHhcccccHHH-HHHHhCCCHHHH
Q 036949 9 LLMSAYSTISTQD-TALFLGMNEDDA 33 (81)
Q Consensus 9 li~~AY~sIs~~~-~a~~Lgls~~e~ 33 (81)
-+.+.|++.|++. +...+|++.-+.
T Consensus 39 el~~~hTTvSVERtVlr~mGidgvda 64 (121)
T 3kp1_E 39 DLGKKNTTPSIERSVLLRMGFSSLEA 64 (121)
T ss_dssp HHHHHEECHHHHHHHHHHTTCCHHHH
T ss_pred HHHHcCCccHHHHHHHHHhCCCccch
Confidence 3567889999887 788999965443
No 478
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=30.31 E-value=59 Score=16.51 Aligned_cols=23 Identities=0% Similarity=0.039 Sum_probs=19.9
Q ss_pred ccccHHHHHHHhCCCHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYV 37 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~ 37 (81)
.-.+..++|..||+|..-+....
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~ 46 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIE 46 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHH
Confidence 78999999999999998876653
No 479
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.28 E-value=52 Score=17.72 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|..|||++..+.-+...+
T Consensus 47 r~~LA~~l~L~~~qV~vWFqNR 68 (80)
T 2dmt_A 47 RIDLAESLGLSQLQVKTWYQNR 68 (80)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHeeeccHHH
Confidence 4568999999999998887654
No 480
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=30.22 E-value=65 Score=17.60 Aligned_cols=21 Identities=5% Similarity=0.026 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHh
Q 036949 19 TQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~ 39 (81)
...+|..+||++..+..+...
T Consensus 60 r~~La~~~gL~~~qV~~WFqN 80 (87)
T 1mnm_C 60 LENLMKNTSLSRIQIKNWVSN 80 (87)
T ss_dssp HHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 456899999999999887654
No 481
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=29.98 E-value=51 Score=17.56 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=17.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHh
Q 036949 19 TQDTALFLGMNEDDAAYYVQQ 39 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~ 39 (81)
...+|..|||++..+.-+...
T Consensus 47 r~~La~~l~l~~~qV~~WFqN 67 (80)
T 2da3_A 47 LDHIAHEVGLKKRVVQVWFQN 67 (80)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHhHHHhHH
Confidence 457899999999999888764
No 482
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=29.97 E-value=27 Score=22.15 Aligned_cols=27 Identities=4% Similarity=-0.075 Sum_probs=21.1
Q ss_pred HHHhCCCHHHHHHHHHhc-CCeEeCCCc
Q 036949 23 ALFLGMNEDDAAYYVQQQ-GWTLDPASR 49 (81)
Q Consensus 23 a~~Lgls~~e~~~~~~~~-GW~~d~~~~ 49 (81)
.-++|++.+|+.+++.+. .|.-|+++.
T Consensus 136 rPLl~~~k~eI~~~a~~~l~~~~~~sn~ 163 (203)
T 3k32_A 136 TPLMGFGYKTLRHLASEFFILEEIKSGT 163 (203)
T ss_dssp CGGGGCCHHHHHHHHHHHEEEEEECC--
T ss_pred eccCCCCHHHHHHHHHHhCCcccCCCCC
Confidence 346899999999999986 898887653
No 483
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=29.90 E-value=49 Score=17.16 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=17.7
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|++..-+..+-.
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHC
Confidence 457888889999988877666543
No 484
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=29.88 E-value=51 Score=17.11 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=18.9
Q ss_pred ccccHHHHHHHhCCCHHHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~~~ 38 (81)
..++..++|..+|++..-+..+-.
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHC
Confidence 467888999999998887776543
No 485
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=29.42 E-value=34 Score=18.13 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=13.6
Q ss_pred ccccHHHHHHHhCCCHHHH
Q 036949 15 STISTQDTALFLGMNEDDA 33 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~ 33 (81)
..+++.++|..+|+|..-+
T Consensus 8 ~~~t~~diA~~aGVS~sTV 26 (67)
T 2l8n_A 8 TAATMKDVALKAKVSTATV 26 (67)
T ss_dssp -CCCHHHHHHHTTCCHHHH
T ss_pred CCCCHHHHHHHHCCCHHHH
Confidence 3578888888888877444
No 486
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=29.38 E-value=64 Score=16.61 Aligned_cols=23 Identities=9% Similarity=0.080 Sum_probs=18.2
Q ss_pred cccccHHHHHHHhCCCHHHHHHH
Q 036949 14 YSTISTQDTALFLGMNEDDAAYY 36 (81)
Q Consensus 14 Y~sIs~~~~a~~Lgls~~e~~~~ 36 (81)
+.-.+..++|..||+|..-+...
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~ 51 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVH 51 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHH
Confidence 77788999999999988665443
No 487
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=29.34 E-value=74 Score=20.58 Aligned_cols=32 Identities=6% Similarity=-0.093 Sum_probs=25.0
Q ss_pred HHHHhcccccHHHHHHHhCCCHHHHHHHHHhc
Q 036949 9 LLMSAYSTISTQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
+..+--.+||-.++|..+|+++.++.+-..--
T Consensus 21 l~~~g~~~iss~~l~~~~~~~~~~iRkdls~~ 52 (211)
T 2dt5_A 21 LEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYF 52 (211)
T ss_dssp HHHTTCCEECHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHcCCcEECHHHHHHHhCCCHHHeechHHHH
Confidence 34445788999999999999998887665543
No 488
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=29.21 E-value=83 Score=17.85 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=24.5
Q ss_pred hcccccHHHHHHHhC--CCHHHHHHHHHhcCC
Q 036949 13 AYSTISTQDTALFLG--MNEDDAAYYVQQQGW 42 (81)
Q Consensus 13 AY~sIs~~~~a~~Lg--ls~~e~~~~~~~~GW 42 (81)
.....+..+++..|| +|..-+..+....||
T Consensus 74 ~~~~~s~~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 74 SNSCKTARDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp HHCCCCHHHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred hCCCCCHHHHHHHHCCCccHHHHHHHHHHCCC
Confidence 345678899999999 588999999998898
No 489
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=29.20 E-value=22 Score=20.72 Aligned_cols=20 Identities=15% Similarity=0.223 Sum_probs=15.3
Q ss_pred CCHHHHHHHHHhc-CCeEeCC
Q 036949 28 MNEDDAAYYVQQQ-GWTLDPA 47 (81)
Q Consensus 28 ls~~e~~~~~~~~-GW~~d~~ 47 (81)
|+++|+.+...+. ||+++.+
T Consensus 9 Ls~~ei~~~L~~l~gW~~~~~ 29 (104)
T 2v6u_A 9 ANSARLLQLHKTVPQWHLTDG 29 (104)
T ss_dssp TTCHHHHHHHTTSTTSEECGG
T ss_pred CCHHHHHHHhhcCCCCeEeCC
Confidence 5778888887775 9999744
No 490
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=29.08 E-value=51 Score=20.97 Aligned_cols=22 Identities=14% Similarity=-0.041 Sum_probs=18.8
Q ss_pred HHHHhcccccHHHHHHHhCCCH
Q 036949 9 LLMSAYSTISTQDTALFLGMNE 30 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~ 30 (81)
+-++-|..+++.++|+-+|++.
T Consensus 29 ~~~~G~~~~s~~~IA~~aGvs~ 50 (237)
T 2hxo_A 29 LDTVGERGLTFRALAERLATGP 50 (237)
T ss_dssp HHHTTTTTCCHHHHHHHHTSCG
T ss_pred HHhcCcccCCHHHHHHHHCCCh
Confidence 4457899999999999999865
No 491
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=28.93 E-value=58 Score=16.96 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=17.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|..|||++..+.-+...+
T Consensus 32 r~~La~~l~l~~~qV~vWFqNR 53 (68)
T 1ahd_P 32 RIEIAHALSLTERQIKIWFQNR 53 (68)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHhhhhHHhHHH
Confidence 4568999999999998876643
No 492
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.81 E-value=1e+02 Score=22.26 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhc---ccccHHHHHHHh-CCCHHHHHHHHHh
Q 036949 3 TKRMFQLLMSAY---STISTQDTALFL-GMNEDDAAYYVQQ 39 (81)
Q Consensus 3 R~~~~~li~~AY---~sIs~~~~a~~L-gls~~e~~~~~~~ 39 (81)
|.+|++...+-+ ..+.++.+|... |+|+.|+...|.+
T Consensus 357 R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~e 397 (434)
T 4b4t_M 357 RAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVE 397 (434)
T ss_dssp HHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 778888766654 457788888876 8999999888775
No 493
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=28.77 E-value=39 Score=19.59 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=16.0
Q ss_pred HHHHHHHhCCCHHHHHHHHH
Q 036949 19 TQDTALFLGMNEDDAAYYVQ 38 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~ 38 (81)
+..+|.+||++.+++.....
T Consensus 58 l~~iA~~Lgv~~~~L~~~~~ 77 (112)
T 2wus_R 58 IKRYSEFLELSPDEMLKLYE 77 (112)
T ss_dssp HHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHH
Confidence 55789999999998876554
No 494
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=28.68 E-value=59 Score=17.39 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=18.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHhc
Q 036949 19 TQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 19 ~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...+|.-|||++..+.-+...+
T Consensus 34 r~~LA~~l~Lte~qVqvWFqNR 55 (69)
T 2l9r_A 34 RAHLAKNLKLTETQVKIWFQNR 55 (69)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCChhheeecchhh
Confidence 4568999999999998887754
No 495
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=28.64 E-value=50 Score=22.43 Aligned_cols=46 Identities=13% Similarity=0.108 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCeEeCCCceEeecCCCCcccCCCChhHHHHHHhHHHhhcC
Q 036949 32 DAAYYVQQQGWTLDPASRMLTVKKQPLVTEQKLDPSKMQCLTEYVFHLEH 81 (81)
Q Consensus 32 e~~~~~~~~GW~~d~~~~~~~p~~~~~~~~~~~~~~~l~~Lt~~v~~LE~ 81 (81)
.+.+...+.|+++.......+|.++..- .+.++.+++-+++--||.
T Consensus 182 ~V~~aL~~~g~~~~~aei~~~P~~~v~l----~~~e~~~~~~klid~Led 227 (249)
T 1lfp_A 182 EVKENLEKLGVPIEKAQITWKPISTVQI----NDEETAQKVIKLLNALEE 227 (249)
T ss_dssp HHHHHHHTTTCCCSEEEEEEEESSCEEC----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCeeeeeeEECCCCceec----CCHHHHHHHHHHHHHHhc
Confidence 3445556678887766666666654321 157888899888888874
No 496
>1jmx_G Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.137.9.1 PDB: 1jmz_G*
Probab=28.64 E-value=13 Score=20.97 Aligned_cols=12 Identities=25% Similarity=0.747 Sum_probs=9.1
Q ss_pred hcCCeEeCCCce
Q 036949 39 QQGWTLDPASRM 50 (81)
Q Consensus 39 ~~GW~~d~~~~~ 50 (81)
.-||++|+-|.+
T Consensus 12 dPGWEvDafGgv 23 (79)
T 1jmx_G 12 DPGWEVDAFGGV 23 (79)
T ss_dssp SSCSSSCTTSSS
T ss_pred CCCceecCCccH
Confidence 349999987655
No 497
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=28.55 E-value=97 Score=18.46 Aligned_cols=39 Identities=10% Similarity=0.028 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcccccHHHHHHHhCCCHHHHHHH---HHhcCCeE
Q 036949 4 KRMFQLLMSAYSTISTQDTALFLGMNEDDAAYY---VQQQGWTL 44 (81)
Q Consensus 4 ~~~~~li~~AY~sIs~~~~a~~Lgls~~e~~~~---~~~~GW~~ 44 (81)
-.|+..+. ...++.+++++.||++..-+... ..+.|+--
T Consensus 27 l~IL~~L~--~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~ 68 (146)
T 2f2e_A 27 MLIVRDAF--EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMV 68 (146)
T ss_dssp HHHHHHHH--TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHH--hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 34566663 67899999999999988766555 44678875
No 498
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=28.54 E-value=80 Score=20.50 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=26.0
Q ss_pred HHHHhcccccHHHHHHHhCCCHHHHHHHHHhcCC
Q 036949 9 LLMSAYSTISTQDTALFLGMNEDDAAYYVQQQGW 42 (81)
Q Consensus 9 li~~AY~sIs~~~~a~~Lgls~~e~~~~~~~~GW 42 (81)
+..+--.+||-.++|..+|+++.++.+-..--|.
T Consensus 26 l~~~g~~~iss~~l~~~~~~~~~~iRkdls~fg~ 59 (215)
T 2vt3_A 26 LHASGKQRVSSAELSDAVKVDSATIRRDFSYFGA 59 (215)
T ss_dssp HHHTTCCEECHHHHHHHHCCCHHHHHHHHHHTTC
T ss_pred HHHcCCcEECHHHHHHHhCCCHHHeechHHHHHH
Confidence 3444578899999999999999988776554443
No 499
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=28.54 E-value=67 Score=17.08 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=15.9
Q ss_pred ccccHHHHHHHhCCCHHHHHHH
Q 036949 15 STISTQDTALFLGMNEDDAAYY 36 (81)
Q Consensus 15 ~sIs~~~~a~~Lgls~~e~~~~ 36 (81)
..++..++|..+|++..-+..+
T Consensus 25 ~glsq~~lA~~~gis~~~is~~ 46 (91)
T 1x57_A 25 KGLTQKDLATKINEKPQVIADY 46 (91)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHH
Confidence 4678888999998877555433
No 500
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=28.51 E-value=47 Score=17.24 Aligned_cols=34 Identities=12% Similarity=0.332 Sum_probs=23.6
Q ss_pred HHHHHHhcccc------cHHHHHHHhCCCHHHHHHHHHhc
Q 036949 7 FQLLMSAYSTI------STQDTALFLGMNEDDAAYYVQQQ 40 (81)
Q Consensus 7 ~~li~~AY~sI------s~~~~a~~Lgls~~e~~~~~~~~ 40 (81)
...++..|..- ....+|..|||++..+.-+...+
T Consensus 15 ~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNr 54 (68)
T 1yz8_P 15 LQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNR 54 (68)
T ss_dssp HHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 44555555432 34579999999999998887643
Done!