Query 036950
Match_columns 469
No_of_seqs 406 out of 3869
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036950.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036950hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0543 FKBP-type peptidyl-pro 100.0 5.7E-60 1.2E-64 454.9 33.2 330 59-429 1-365 (397)
2 KOG0545 Aryl-hydrocarbon recep 100.0 1.3E-29 2.8E-34 227.7 13.6 246 167-418 9-328 (329)
3 KOG0549 FKBP-type peptidyl-pro 100.0 9.4E-28 2E-32 206.8 13.1 170 95-277 1-180 (188)
4 KOG0549 FKBP-type peptidyl-pro 99.9 2.4E-25 5.2E-30 191.9 15.7 151 1-160 19-177 (188)
5 KOG0543 FKBP-type peptidyl-pro 99.9 1E-24 2.2E-29 211.1 20.9 295 18-421 61-361 (397)
6 KOG0544 FKBP-type peptidyl-pro 99.9 2.3E-23 5E-28 158.3 11.4 102 52-158 2-107 (108)
7 KOG0544 FKBP-type peptidyl-pro 99.9 2.6E-23 5.6E-28 158.1 8.6 100 169-272 2-107 (108)
8 COG0545 FkpA FKBP-type peptidy 99.9 3.8E-22 8.3E-27 176.3 11.9 102 49-158 99-204 (205)
9 COG0545 FkpA FKBP-type peptidy 99.9 1.3E-21 2.9E-26 172.8 8.6 101 166-272 99-204 (205)
10 KOG4234 TPR repeat-containing 99.8 5.7E-19 1.2E-23 155.0 13.8 150 286-453 91-264 (271)
11 TIGR03516 ppisom_GldI peptidyl 99.8 5.8E-19 1.2E-23 157.8 13.5 106 48-159 66-176 (177)
12 KOG0552 FKBP-type peptidyl-pro 99.8 7.2E-19 1.6E-23 159.6 11.9 105 47-158 116-225 (226)
13 PRK11570 peptidyl-prolyl cis-t 99.8 1.3E-18 2.8E-23 159.4 13.5 102 49-158 100-205 (206)
14 PRK10902 FKBP-type peptidyl-pr 99.7 5.4E-17 1.2E-21 154.1 13.4 104 49-161 144-251 (269)
15 PRK11570 peptidyl-prolyl cis-t 99.7 3.5E-17 7.5E-22 150.0 10.1 100 166-272 100-205 (206)
16 PF00254 FKBP_C: FKBP-type pep 99.7 1.7E-16 3.6E-21 128.1 11.8 88 65-156 3-94 (94)
17 KOG0553 TPR repeat-containing 99.7 8.1E-17 1.8E-21 150.6 10.8 105 282-406 73-200 (304)
18 KOG0552 FKBP-type peptidyl-pro 99.7 1.2E-16 2.5E-21 145.3 8.4 101 166-272 118-225 (226)
19 TIGR03516 ppisom_GldI peptidyl 99.6 6E-16 1.3E-20 138.4 9.6 102 166-273 67-176 (177)
20 PF00254 FKBP_C: FKBP-type pep 99.6 5.8E-15 1.3E-19 119.1 11.6 82 186-270 12-94 (94)
21 PRK10902 FKBP-type peptidyl-pr 99.6 4.3E-15 9.3E-20 141.2 10.4 102 166-275 144-251 (269)
22 KOG0550 Molecular chaperone (D 99.6 1.2E-14 2.6E-19 140.6 9.5 162 285-467 244-430 (486)
23 KOG0624 dsRNA-activated protei 99.5 1.1E-14 2.5E-19 137.5 7.0 164 285-467 264-453 (504)
24 KOG4648 Uncharacterized conser 99.5 7.2E-14 1.6E-18 132.1 8.6 97 284-400 91-210 (536)
25 KOG0548 Molecular co-chaperone 99.4 1.2E-12 2.6E-17 130.8 10.9 94 289-402 357-473 (539)
26 KOG0551 Hsp90 co-chaperone CNS 99.4 3.3E-12 7.1E-17 120.8 12.7 71 288-369 79-149 (390)
27 PRK15095 FKBP-type peptidyl-pr 99.4 6E-13 1.3E-17 116.8 6.5 70 66-135 4-77 (156)
28 KOG0547 Translocase of outer m 99.4 4.5E-12 9.7E-17 125.2 13.0 77 278-369 103-179 (606)
29 COG1047 SlpA FKBP-type peptidy 99.4 1.2E-12 2.5E-17 114.3 7.0 72 66-137 2-77 (174)
30 PRK10737 FKBP-type peptidyl-pr 99.3 1.3E-12 2.7E-17 117.8 6.4 71 66-136 2-75 (196)
31 PRK15095 FKBP-type peptidyl-pr 99.3 1.4E-11 3.1E-16 108.1 8.9 63 186-249 12-75 (156)
32 TIGR00990 3a0801s09 mitochondr 99.1 1.6E-09 3.4E-14 117.2 14.6 97 256-369 94-190 (615)
33 KOG4642 Chaperone-dependent E3 99.1 2.4E-10 5.2E-15 103.7 6.9 100 288-402 8-130 (284)
34 COG1047 SlpA FKBP-type peptidy 99.0 1.7E-09 3.7E-14 94.6 9.0 60 189-249 14-73 (174)
35 KOG0546 HSP90 co-chaperone CPR 99.0 3.4E-10 7.3E-15 108.5 4.6 136 278-418 209-372 (372)
36 PLN03088 SGT1, suppressor of 99.0 5.1E-09 1.1E-13 105.2 12.3 96 290-405 2-120 (356)
37 PRK10737 FKBP-type peptidyl-pr 98.9 3.1E-09 6.8E-14 95.9 8.7 60 189-250 14-73 (196)
38 PF13414 TPR_11: TPR repeat; P 98.9 2E-09 4.3E-14 81.2 6.1 65 290-369 3-68 (69)
39 KOG0548 Molecular co-chaperone 98.9 6E-09 1.3E-13 104.7 9.1 90 290-399 2-114 (539)
40 TIGR00115 tig trigger factor. 98.8 1.5E-08 3.3E-13 103.9 10.5 98 66-174 146-245 (408)
41 KOG0376 Serine-threonine phosp 98.8 6.1E-09 1.3E-13 103.8 6.9 98 289-406 3-123 (476)
42 COG0544 Tig FKBP-type peptidyl 98.8 1.8E-08 4E-13 102.7 8.4 97 67-174 158-256 (441)
43 PRK01490 tig trigger factor; P 98.7 4.9E-08 1.1E-12 101.0 10.7 97 66-173 157-255 (435)
44 KOG0550 Molecular chaperone (D 98.6 1.4E-07 2.9E-12 92.2 7.1 72 283-369 42-113 (486)
45 PRK15359 type III secretion sy 98.5 1.1E-06 2.3E-11 76.6 12.1 90 294-403 28-140 (144)
46 KOG0545 Aryl-hydrocarbon recep 98.5 1E-06 2.2E-11 80.7 10.4 236 50-369 9-294 (329)
47 TIGR02552 LcrH_SycD type III s 98.4 3.6E-06 7.8E-11 72.0 11.9 92 291-402 18-132 (135)
48 PF13424 TPR_12: Tetratricopep 98.4 2.1E-06 4.7E-11 66.1 8.3 73 288-368 3-75 (78)
49 KOG1308 Hsp70-interacting prot 98.3 5.4E-07 1.2E-11 86.3 3.6 87 282-383 106-215 (377)
50 KOG4626 O-linked N-acetylgluco 98.2 9.3E-06 2E-10 83.2 11.5 63 292-369 356-418 (966)
51 PRK15363 pathogenicity island 98.2 2.8E-05 6.1E-10 67.6 12.4 65 290-369 35-99 (157)
52 PF14559 TPR_19: Tetratricopep 98.2 4.4E-06 9.5E-11 62.4 6.3 52 300-366 1-52 (68)
53 PF13432 TPR_16: Tetratricopep 98.1 6.7E-06 1.4E-10 60.9 6.4 58 295-367 2-59 (65)
54 PF13371 TPR_9: Tetratricopept 98.1 1.4E-05 3E-10 60.6 8.0 62 297-384 2-63 (73)
55 KOG4555 TPR repeat-containing 98.1 8.5E-05 1.8E-09 61.8 12.5 71 284-369 37-107 (175)
56 KOG0624 dsRNA-activated protei 98.1 1.9E-05 4.1E-10 75.8 9.8 81 289-384 37-140 (504)
57 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 2.6E-05 5.6E-10 78.5 11.1 70 288-369 73-142 (453)
58 TIGR00115 tig trigger factor. 98.1 0.00028 6.1E-09 72.5 18.9 75 189-275 158-232 (408)
59 PRK11189 lipoprotein NlpI; Pro 97.9 6.4E-05 1.4E-09 73.8 10.5 80 290-384 64-166 (296)
60 PRK02603 photosystem I assembl 97.9 7.1E-05 1.5E-09 67.2 9.8 73 285-369 30-102 (172)
61 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00012 2.6E-09 60.6 10.4 65 292-368 4-68 (119)
62 PRK15359 type III secretion sy 97.9 3.6E-05 7.8E-10 67.0 7.2 65 290-369 58-122 (144)
63 PRK01490 tig trigger factor; P 97.9 0.0015 3.2E-08 67.8 19.8 75 189-275 169-243 (435)
64 KOG4626 O-linked N-acetylgluco 97.8 6.9E-05 1.5E-09 77.0 9.3 100 288-407 114-270 (966)
65 TIGR00990 3a0801s09 mitochondr 97.8 0.00018 3.8E-09 78.1 13.0 64 291-369 332-395 (615)
66 CHL00033 ycf3 photosystem I as 97.8 0.00017 3.7E-09 64.4 10.1 72 286-369 31-102 (168)
67 PRK10866 outer membrane biogen 97.7 0.00087 1.9E-08 63.7 14.6 66 292-369 34-99 (243)
68 COG3063 PilF Tfp pilus assembl 97.7 0.00049 1.1E-08 63.1 12.0 100 286-405 31-189 (250)
69 cd00189 TPR Tetratricopeptide 97.7 0.00027 5.9E-09 54.4 8.8 81 293-404 3-83 (100)
70 PRK10370 formate-dependent nit 97.6 0.00079 1.7E-08 61.9 12.2 80 290-384 73-178 (198)
71 PF00515 TPR_1: Tetratricopept 97.6 0.00012 2.7E-09 46.4 4.3 30 340-369 2-31 (34)
72 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.0003 6.5E-09 49.6 6.4 48 341-404 3-50 (53)
73 TIGR03302 OM_YfiO outer membra 97.5 0.0024 5.3E-08 60.0 14.3 68 290-369 33-100 (235)
74 PRK10370 formate-dependent nit 97.5 0.0011 2.5E-08 60.8 11.6 100 302-422 51-176 (198)
75 PF13525 YfiO: Outer membrane 97.5 0.0023 5.1E-08 59.0 13.7 103 290-406 5-144 (203)
76 PRK09782 bacteriophage N4 rece 97.5 0.0012 2.7E-08 74.5 14.0 88 294-401 613-723 (987)
77 PRK15363 pathogenicity island 97.5 0.00031 6.7E-09 61.2 6.9 63 290-367 69-131 (157)
78 TIGR02521 type_IV_pilW type IV 97.5 0.0015 3.3E-08 60.1 12.1 89 294-402 69-182 (234)
79 KOG1126 DNA-binding cell divis 97.5 0.00022 4.7E-09 74.1 6.6 111 290-405 421-573 (638)
80 PLN03088 SGT1, suppressor of 97.4 0.0008 1.7E-08 67.8 9.9 63 292-369 38-100 (356)
81 TIGR02552 LcrH_SycD type III s 97.4 0.00089 1.9E-08 57.0 8.3 63 292-369 53-115 (135)
82 PRK12370 invasion protein regu 97.3 0.0018 4E-08 69.2 12.2 61 294-369 342-402 (553)
83 PRK11189 lipoprotein NlpI; Pro 97.3 0.0017 3.6E-08 63.7 10.2 64 291-369 99-162 (296)
84 KOG1310 WD40 repeat protein [G 97.3 0.00046 1E-08 69.9 6.0 71 284-369 368-441 (758)
85 KOG1840 Kinesin light chain [C 97.2 0.0028 6.1E-08 66.0 11.7 77 286-369 237-313 (508)
86 KOG1173 Anaphase-promoting com 97.2 0.0028 6.1E-08 64.9 11.4 58 339-401 455-535 (611)
87 PF13414 TPR_11: TPR repeat; P 97.2 0.00076 1.6E-08 50.3 5.5 49 339-403 3-51 (69)
88 TIGR02521 type_IV_pilW type IV 97.2 0.0059 1.3E-07 56.1 12.7 79 293-384 102-203 (234)
89 COG5010 TadD Flp pilus assembl 97.2 0.003 6.6E-08 59.0 10.4 93 294-406 104-219 (257)
90 PRK09782 bacteriophage N4 rece 97.2 0.0031 6.8E-08 71.3 12.5 73 339-417 609-704 (987)
91 COG0544 Tig FKBP-type peptidyl 97.2 0.016 3.4E-07 59.7 16.4 73 189-275 169-243 (441)
92 PRK11447 cellulose synthase su 97.2 0.0035 7.7E-08 73.0 13.0 28 296-323 275-302 (1157)
93 PRK15331 chaperone protein Sic 97.2 0.0071 1.5E-07 53.1 11.6 64 291-369 38-101 (165)
94 PF12895 Apc3: Anaphase-promot 97.2 0.00094 2E-08 52.1 5.7 58 292-365 27-84 (84)
95 KOG2003 TPR repeat-containing 97.1 0.00048 1E-08 68.5 4.6 65 295-369 242-306 (840)
96 PF13512 TPR_18: Tetratricopep 97.1 0.007 1.5E-07 51.9 10.5 66 292-369 12-77 (142)
97 PRK15174 Vi polysaccharide exp 97.0 0.0048 1E-07 67.4 11.8 86 296-401 218-330 (656)
98 KOG1155 Anaphase-promoting com 97.0 0.0039 8.4E-08 62.6 9.9 94 296-409 336-452 (559)
99 PF14938 SNAP: Soluble NSF att 97.0 0.004 8.8E-08 60.6 10.0 73 288-369 112-185 (282)
100 COG4105 ComL DNA uptake lipopr 97.0 0.023 4.9E-07 53.4 14.3 104 290-407 34-171 (254)
101 KOG0553 TPR repeat-containing 97.0 0.002 4.3E-08 61.4 7.1 68 294-376 119-192 (304)
102 PLN02789 farnesyltranstransfer 97.0 0.0092 2E-07 59.0 11.9 85 300-404 47-157 (320)
103 PRK10803 tol-pal system protei 97.0 0.01 2.2E-07 57.0 11.9 63 294-368 146-209 (263)
104 PRK11447 cellulose synthase su 96.9 0.008 1.7E-07 70.1 12.9 61 294-369 355-415 (1157)
105 PF12895 Apc3: Anaphase-promot 96.9 0.0018 3.9E-08 50.5 5.3 49 303-364 2-50 (84)
106 PF07719 TPR_2: Tetratricopept 96.9 0.0021 4.5E-08 40.5 4.3 29 340-368 2-30 (34)
107 KOG1129 TPR repeat-containing 96.9 0.0038 8.2E-08 60.1 7.8 90 296-405 330-445 (478)
108 PRK15179 Vi polysaccharide bio 96.9 0.013 2.8E-07 63.9 12.9 98 290-407 86-206 (694)
109 PRK11788 tetratricopeptide rep 96.9 0.019 4.1E-07 58.2 13.6 77 293-384 183-283 (389)
110 KOG4151 Myosin assembly protei 96.8 0.0028 6.1E-08 67.5 7.2 92 282-384 45-161 (748)
111 KOG1125 TPR repeat-containing 96.8 0.0021 4.5E-08 66.1 5.7 77 293-369 433-528 (579)
112 PRK11788 tetratricopeptide rep 96.8 0.017 3.7E-07 58.5 12.4 30 340-369 181-210 (389)
113 TIGR02795 tol_pal_ybgF tol-pal 96.7 0.008 1.7E-07 49.4 8.2 70 292-384 41-110 (119)
114 PRK15174 Vi polysaccharide exp 96.7 0.015 3.3E-07 63.5 12.6 76 294-384 250-352 (656)
115 KOG1126 DNA-binding cell divis 96.7 0.0031 6.7E-08 65.8 6.6 107 296-407 461-609 (638)
116 PRK12370 invasion protein regu 96.7 0.014 3.1E-07 62.4 12.1 68 302-384 316-406 (553)
117 PRK15179 Vi polysaccharide bio 96.7 0.016 3.4E-07 63.3 11.8 97 290-406 120-240 (694)
118 TIGR02917 PEP_TPR_lipo putativ 96.7 0.014 3.1E-07 65.1 12.1 80 290-384 125-227 (899)
119 KOG1130 Predicted G-alpha GTPa 96.7 0.0025 5.4E-08 63.0 5.0 76 285-369 190-265 (639)
120 PF06552 TOM20_plant: Plant sp 96.6 0.014 3.1E-07 51.8 9.2 83 305-411 50-136 (186)
121 KOG4234 TPR repeat-containing 96.6 0.028 6.1E-07 50.6 11.1 78 289-381 133-213 (271)
122 KOG0547 Translocase of outer m 96.6 0.027 5.8E-07 57.1 12.0 68 287-369 323-390 (606)
123 KOG1173 Anaphase-promoting com 96.6 0.0078 1.7E-07 61.8 8.3 72 293-379 458-535 (611)
124 PF13431 TPR_17: Tetratricopep 96.5 0.0024 5.2E-08 40.6 2.8 33 312-359 1-33 (34)
125 cd00189 TPR Tetratricopeptide 96.5 0.008 1.7E-07 45.9 6.5 62 292-368 36-97 (100)
126 PRK10049 pgaA outer membrane p 96.5 0.02 4.4E-07 63.7 12.0 87 293-399 52-160 (765)
127 PF13176 TPR_7: Tetratricopept 96.5 0.0039 8.4E-08 40.2 3.8 28 341-368 1-28 (36)
128 PF03704 BTAD: Bacterial trans 96.5 0.1 2.2E-06 45.0 13.7 97 292-404 8-111 (146)
129 KOG2003 TPR repeat-containing 96.5 0.0047 1E-07 61.7 5.6 92 291-402 491-605 (840)
130 PRK02603 photosystem I assembl 96.4 0.022 4.8E-07 50.9 9.5 80 290-384 72-154 (172)
131 TIGR02917 PEP_TPR_lipo putativ 96.4 0.027 5.9E-07 62.9 12.3 87 293-399 739-847 (899)
132 KOG1155 Anaphase-promoting com 96.4 0.04 8.7E-07 55.5 11.7 29 295-323 369-397 (559)
133 KOG2002 TPR-containing nuclear 96.4 0.011 2.4E-07 64.2 8.4 100 300-404 622-765 (1018)
134 KOG1174 Anaphase-promoting com 96.4 0.048 1.1E-06 54.2 12.0 79 291-384 335-438 (564)
135 TIGR03302 OM_YfiO outer membra 96.4 0.054 1.2E-06 50.8 12.4 65 293-369 73-145 (235)
136 KOG4814 Uncharacterized conser 96.4 0.025 5.4E-07 58.9 10.3 68 293-369 357-424 (872)
137 KOG2076 RNA polymerase III tra 96.4 0.059 1.3E-06 58.4 13.4 34 290-323 139-172 (895)
138 PF13424 TPR_12: Tetratricopep 96.3 0.011 2.5E-07 45.0 6.0 32 337-368 3-34 (78)
139 COG3063 PilF Tfp pilus assembl 96.3 0.035 7.6E-07 51.2 9.7 64 293-369 106-169 (250)
140 KOG4648 Uncharacterized conser 96.3 0.00039 8.4E-09 67.0 -3.1 98 285-403 229-349 (536)
141 KOG2002 TPR-containing nuclear 96.2 0.053 1.1E-06 59.2 12.4 91 295-402 275-389 (1018)
142 PLN02789 farnesyltranstransfer 96.2 0.078 1.7E-06 52.5 12.9 86 293-398 74-185 (320)
143 KOG2076 RNA polymerase III tra 96.2 0.021 4.5E-07 61.7 8.8 68 288-369 412-479 (895)
144 PRK10049 pgaA outer membrane p 96.1 0.037 8.1E-07 61.6 11.3 61 294-369 363-423 (765)
145 PF13429 TPR_15: Tetratricopep 96.1 0.026 5.6E-07 54.7 8.9 97 292-404 148-263 (280)
146 KOG1840 Kinesin light chain [C 96.0 0.087 1.9E-06 55.1 12.6 75 288-369 323-397 (508)
147 PF07719 TPR_2: Tetratricopept 96.0 0.014 3.1E-07 36.5 4.3 32 291-322 2-33 (34)
148 CHL00033 ycf3 photosystem I as 96.0 0.034 7.4E-07 49.4 8.3 82 291-384 73-154 (168)
149 PF13181 TPR_8: Tetratricopept 96.0 0.012 2.6E-07 36.9 3.9 29 340-368 2-30 (34)
150 PRK14574 hmsH outer membrane p 96.0 0.052 1.1E-06 60.4 11.3 90 293-402 105-216 (822)
151 PF13428 TPR_14: Tetratricopep 95.9 0.017 3.6E-07 38.9 4.5 41 341-397 3-43 (44)
152 PRK14720 transcript cleavage f 95.9 0.059 1.3E-06 59.8 10.9 62 292-369 118-179 (906)
153 PF00515 TPR_1: Tetratricopept 95.8 0.018 3.8E-07 36.2 4.2 33 290-322 1-33 (34)
154 PF12968 DUF3856: Domain of Un 95.8 0.32 7E-06 40.2 12.2 71 294-367 13-83 (144)
155 PRK10803 tol-pal system protei 95.8 0.043 9.2E-07 52.7 8.5 79 292-398 182-260 (263)
156 PF15015 NYD-SP12_N: Spermatog 95.8 0.092 2E-06 52.4 10.7 76 294-369 180-258 (569)
157 PF13432 TPR_16: Tetratricopep 95.6 0.024 5.1E-07 41.5 4.7 59 343-418 1-59 (65)
158 PF13374 TPR_10: Tetratricopep 95.6 0.023 4.9E-07 37.3 4.1 30 339-368 2-31 (42)
159 KOG1125 TPR repeat-containing 95.6 0.033 7.2E-07 57.5 7.0 88 305-410 409-519 (579)
160 COG4783 Putative Zn-dependent 95.5 0.14 3E-06 52.1 11.0 83 296-409 346-428 (484)
161 PF09976 TPR_21: Tetratricopep 95.4 0.1 2.2E-06 45.2 8.8 61 292-364 50-110 (145)
162 KOG4340 Uncharacterized conser 95.4 0.024 5.1E-07 54.1 5.0 64 290-368 144-207 (459)
163 PRK14574 hmsH outer membrane p 95.4 0.11 2.4E-06 57.9 11.0 124 291-421 35-200 (822)
164 PF10952 DUF2753: Protein of u 95.3 0.27 5.9E-06 40.7 10.3 75 292-366 3-77 (140)
165 smart00028 TPR Tetratricopepti 95.2 0.031 6.7E-07 33.4 3.8 29 340-368 2-30 (34)
166 COG4785 NlpI Lipoprotein NlpI, 95.0 0.31 6.7E-06 44.7 10.7 87 280-384 58-167 (297)
167 COG1729 Uncharacterized protei 95.0 0.25 5.3E-06 46.9 10.6 64 292-367 143-206 (262)
168 PF10579 Rapsyn_N: Rapsyn N-te 95.0 0.24 5.3E-06 37.7 8.3 67 289-367 5-71 (80)
169 PRK15331 chaperone protein Sic 94.9 0.16 3.5E-06 44.7 8.4 60 293-367 74-133 (165)
170 PF12862 Apc5: Anaphase-promot 94.9 0.18 3.8E-06 40.2 8.0 65 299-369 7-71 (94)
171 PF09295 ChAPs: ChAPs (Chs5p-A 94.7 0.076 1.7E-06 53.9 6.9 62 290-366 234-295 (395)
172 PF12688 TPR_5: Tetratrico pep 94.6 0.21 4.4E-06 41.9 8.1 64 293-368 4-67 (120)
173 KOG1586 Protein required for f 94.6 0.94 2E-05 42.1 12.8 115 286-415 108-254 (288)
174 PF13176 TPR_7: Tetratricopept 94.6 0.063 1.4E-06 34.4 3.9 28 293-320 2-29 (36)
175 KOG1128 Uncharacterized conser 94.4 0.16 3.5E-06 54.0 8.5 78 295-403 490-567 (777)
176 COG2956 Predicted N-acetylgluc 94.4 0.54 1.2E-05 45.7 11.2 38 278-318 98-135 (389)
177 PF13174 TPR_6: Tetratricopept 94.3 0.059 1.3E-06 33.3 3.2 27 341-367 2-28 (33)
178 PF14938 SNAP: Soluble NSF att 94.0 1 2.2E-05 43.7 12.8 72 288-369 33-104 (282)
179 PF12688 TPR_5: Tetratrico pep 93.9 0.53 1.1E-05 39.4 9.2 76 292-379 40-115 (120)
180 PF13525 YfiO: Outer membrane 93.9 1.3 2.9E-05 40.6 12.7 65 293-369 45-120 (203)
181 TIGR00540 hemY_coli hemY prote 93.7 1.4 3E-05 45.3 13.8 101 286-406 80-204 (409)
182 KOG3060 Uncharacterized conser 93.7 2.1 4.5E-05 40.4 13.2 101 295-400 91-236 (289)
183 PRK10747 putative protoheme IX 93.6 1.1 2.5E-05 45.7 13.0 100 286-405 80-203 (398)
184 COG3947 Response regulator con 93.6 1.1 2.3E-05 43.0 11.4 62 308-369 242-309 (361)
185 KOG3785 Uncharacterized conser 93.5 0.27 5.9E-06 48.1 7.4 56 296-366 63-118 (557)
186 PF03704 BTAD: Bacterial trans 93.4 0.84 1.8E-05 39.2 10.0 88 278-384 48-137 (146)
187 PF13428 TPR_14: Tetratricopep 93.2 0.21 4.5E-06 33.5 4.6 31 293-323 4-34 (44)
188 cd05804 StaR_like StaR_like; a 93.2 0.25 5.3E-06 49.3 7.2 60 294-368 118-177 (355)
189 KOG3364 Membrane protein invol 93.1 0.25 5.3E-06 41.8 5.7 50 339-404 71-120 (149)
190 KOG1174 Anaphase-promoting com 93.1 0.39 8.4E-06 48.1 7.9 100 298-402 376-518 (564)
191 PF13429 TPR_15: Tetratricopep 92.9 0.6 1.3E-05 45.1 9.2 94 294-405 114-230 (280)
192 PRK10153 DNA-binding transcrip 92.9 3.7 8.1E-05 43.5 15.6 92 293-384 342-487 (517)
193 PF08631 SPO22: Meiosis protei 92.8 0.96 2.1E-05 43.8 10.5 87 280-368 25-112 (278)
194 PF06957 COPI_C: Coatomer (COP 92.7 0.82 1.8E-05 46.6 9.9 99 286-384 200-314 (422)
195 KOG2376 Signal recognition par 92.6 1.6 3.4E-05 45.7 11.9 114 295-419 115-253 (652)
196 COG4235 Cytochrome c biogenesi 92.5 1.6 3.5E-05 42.0 11.2 34 290-323 156-189 (287)
197 COG4235 Cytochrome c biogenesi 92.4 1.6 3.5E-05 42.0 11.0 99 305-424 137-261 (287)
198 cd02682 MIT_AAA_Arch MIT: doma 92.1 1.9 4.2E-05 32.7 8.9 60 339-411 6-65 (75)
199 COG4700 Uncharacterized protei 91.7 4.8 0.0001 36.3 12.2 62 293-369 92-154 (251)
200 cd05804 StaR_like StaR_like; a 91.6 0.55 1.2E-05 46.8 7.4 65 293-368 151-215 (355)
201 COG5010 TadD Flp pilus assembl 91.6 1.4 3.1E-05 41.4 9.4 77 293-384 137-219 (257)
202 cd02682 MIT_AAA_Arch MIT: doma 91.5 1 2.2E-05 34.2 6.9 62 288-349 4-66 (75)
203 KOG1156 N-terminal acetyltrans 91.5 0.91 2E-05 47.9 8.8 93 294-406 11-126 (700)
204 PF06552 TOM20_plant: Plant sp 91.5 4.5 9.8E-05 36.2 11.9 60 306-384 7-69 (186)
205 cd02677 MIT_SNX15 MIT: domain 91.4 0.85 1.8E-05 34.7 6.4 60 287-346 3-63 (75)
206 PF04733 Coatomer_E: Coatomer 91.3 0.59 1.3E-05 45.6 6.9 51 304-369 181-231 (290)
207 PF10602 RPN7: 26S proteasome 91.2 1.3 2.8E-05 39.8 8.6 66 290-367 36-101 (177)
208 PF12968 DUF3856: Domain of Un 91.2 1.2 2.6E-05 36.9 7.3 70 295-368 60-129 (144)
209 PRK10866 outer membrane biogen 91.1 5 0.00011 38.0 13.0 49 293-353 72-120 (243)
210 cd02684 MIT_2 MIT: domain cont 91.1 0.75 1.6E-05 35.0 5.9 36 287-322 3-38 (75)
211 cd02681 MIT_calpain7_1 MIT: do 91.1 0.93 2E-05 34.5 6.4 35 288-322 4-38 (76)
212 PF13181 TPR_8: Tetratricopept 91.1 0.49 1.1E-05 29.3 4.2 31 291-321 2-32 (34)
213 cd02683 MIT_1 MIT: domain cont 91.1 0.83 1.8E-05 34.9 6.1 60 288-347 4-64 (77)
214 COG1729 Uncharacterized protei 91.0 0.93 2E-05 43.1 7.7 77 294-398 182-258 (262)
215 PRK14720 transcript cleavage f 91.0 2.1 4.4E-05 48.0 11.4 30 340-369 117-146 (906)
216 KOG1130 Predicted G-alpha GTPa 90.7 0.61 1.3E-05 46.7 6.3 69 290-369 17-85 (639)
217 PRK10153 DNA-binding transcrip 90.5 0.8 1.7E-05 48.5 7.6 59 295-369 425-483 (517)
218 PLN03098 LPA1 LOW PSII ACCUMUL 90.4 0.73 1.6E-05 47.1 6.8 31 339-369 75-105 (453)
219 KOG1941 Acetylcholine receptor 90.2 0.66 1.4E-05 45.7 6.0 96 289-384 5-156 (518)
220 KOG1129 TPR repeat-containing 89.9 2.7 5.8E-05 41.1 9.6 99 295-398 228-367 (478)
221 KOG1128 Uncharacterized conser 89.6 1.5 3.2E-05 47.0 8.5 62 293-369 522-583 (777)
222 PF12569 NARP1: NMDA receptor- 89.6 2.3 5E-05 44.9 10.0 57 298-369 12-68 (517)
223 PF04212 MIT: MIT (microtubule 89.3 1.1 2.4E-05 33.3 5.5 35 287-321 2-36 (69)
224 PF13512 TPR_18: Tetratricopep 89.2 2.3 5.1E-05 36.5 8.0 76 294-384 51-133 (142)
225 cd02678 MIT_VPS4 MIT: domain c 89.1 1.5 3.2E-05 33.3 6.1 36 287-322 3-38 (75)
226 KOG4642 Chaperone-dependent E3 89.0 2.6 5.7E-05 39.3 8.6 63 292-369 46-108 (284)
227 KOG1156 N-terminal acetyltrans 89.0 4.8 0.0001 42.7 11.5 73 295-367 80-171 (700)
228 KOG2796 Uncharacterized conser 88.9 0.64 1.4E-05 43.9 4.6 63 292-369 254-316 (366)
229 PF11817 Foie-gras_1: Foie gra 88.7 1.9 4E-05 41.0 7.9 64 295-367 183-246 (247)
230 PF13374 TPR_10: Tetratricopep 88.6 0.9 1.9E-05 29.4 4.2 33 290-322 2-34 (42)
231 KOG4162 Predicted calmodulin-b 88.5 1.7 3.7E-05 46.8 7.9 87 300-406 660-771 (799)
232 PF10300 DUF3808: Protein of u 88.4 4.9 0.00011 42.1 11.5 66 293-369 270-335 (468)
233 cd02656 MIT MIT: domain contai 88.2 2.5 5.3E-05 32.0 6.8 36 287-322 3-38 (75)
234 PF12569 NARP1: NMDA receptor- 88.1 2.1 4.6E-05 45.2 8.5 66 339-409 194-282 (517)
235 PRK10941 hypothetical protein; 87.9 2.9 6.3E-05 40.3 8.6 50 335-384 177-249 (269)
236 COG2956 Predicted N-acetylgluc 87.5 8.7 0.00019 37.6 11.4 68 287-369 177-244 (389)
237 smart00028 TPR Tetratricopepti 87.5 0.79 1.7E-05 26.7 3.1 29 293-321 4-32 (34)
238 COG4783 Putative Zn-dependent 87.3 9.3 0.0002 39.3 12.0 31 295-325 379-409 (484)
239 PF13174 TPR_6: Tetratricopept 87.0 1 2.3E-05 27.4 3.5 30 293-322 3-32 (33)
240 cd02680 MIT_calpain7_2 MIT: do 86.3 3.4 7.4E-05 31.4 6.5 35 288-322 4-38 (75)
241 KOG1308 Hsp70-interacting prot 86.3 0.89 1.9E-05 44.5 4.1 80 290-384 148-229 (377)
242 cd02683 MIT_1 MIT: domain cont 86.3 11 0.00024 28.8 9.4 58 341-411 8-65 (77)
243 PF04184 ST7: ST7 protein; In 86.1 3.8 8.2E-05 42.3 8.6 58 294-364 263-320 (539)
244 KOG3785 Uncharacterized conser 85.8 3.7 8E-05 40.5 8.0 58 298-369 30-87 (557)
245 smart00745 MIT Microtubule Int 84.9 6.8 0.00015 29.6 7.8 36 287-322 5-40 (77)
246 KOG3060 Uncharacterized conser 84.6 17 0.00036 34.5 11.4 73 290-377 154-229 (289)
247 KOG1585 Protein required for f 84.6 14 0.0003 34.9 10.8 116 294-419 114-252 (308)
248 KOG0551 Hsp90 co-chaperone CNS 84.4 2.1 4.6E-05 41.8 5.6 88 294-401 123-213 (390)
249 PRK10747 putative protoheme IX 84.1 3.9 8.4E-05 41.8 8.0 59 294-368 332-390 (398)
250 cd02679 MIT_spastin MIT: domai 84.1 11 0.00023 29.0 8.3 65 288-352 6-76 (79)
251 PF10255 Paf67: RNA polymerase 83.7 5 0.00011 40.8 8.3 34 335-368 160-193 (404)
252 KOG0376 Serine-threonine phosp 83.1 1.4 2.9E-05 45.2 4.0 60 295-369 43-102 (476)
253 PF10516 SHNi-TPR: SHNi-TPR; 82.8 2.5 5.3E-05 27.5 3.7 29 341-369 3-31 (38)
254 KOG4162 Predicted calmodulin-b 82.8 9.5 0.00021 41.4 10.1 69 301-384 695-788 (799)
255 COG2976 Uncharacterized protei 82.6 12 0.00026 33.9 9.3 65 292-368 91-155 (207)
256 PF13371 TPR_9: Tetratricopept 82.3 6.7 0.00014 28.8 6.7 55 346-417 2-56 (73)
257 KOG0495 HAT repeat protein [RN 82.3 15 0.00032 39.5 11.0 104 298-422 659-785 (913)
258 PF09976 TPR_21: Tetratricopep 82.1 15 0.00032 31.5 9.7 73 285-369 6-78 (145)
259 PF14559 TPR_19: Tetratricopep 82.1 3 6.4E-05 30.3 4.6 45 349-409 1-45 (68)
260 smart00745 MIT Microtubule Int 82.0 16 0.00034 27.6 8.8 55 343-410 12-66 (77)
261 PF09295 ChAPs: ChAPs (Chs5p-A 81.0 11 0.00024 38.5 9.6 83 296-409 206-288 (395)
262 COG3118 Thioredoxin domain-con 80.9 17 0.00038 35.1 10.3 89 293-401 137-248 (304)
263 KOG4507 Uncharacterized conser 80.8 6.9 0.00015 41.2 8.0 82 300-400 617-721 (886)
264 PF07721 TPR_4: Tetratricopept 80.4 2.2 4.7E-05 24.9 2.7 23 341-363 3-25 (26)
265 KOG2376 Signal recognition par 79.9 7.4 0.00016 40.9 8.0 77 293-369 178-254 (652)
266 PF04212 MIT: MIT (microtubule 79.9 18 0.0004 26.6 8.3 39 342-384 8-46 (69)
267 TIGR00540 hemY_coli hemY prote 79.2 6.1 0.00013 40.5 7.4 57 295-367 340-398 (409)
268 TIGR03504 FimV_Cterm FimV C-te 79.0 3.1 6.8E-05 28.0 3.4 26 342-367 2-27 (44)
269 KOG4555 TPR repeat-containing 78.9 23 0.00051 30.1 9.1 70 289-369 76-145 (175)
270 KOG0739 AAA+-type ATPase [Post 78.7 2.8 6.2E-05 40.5 4.2 37 285-321 5-41 (439)
271 PF13431 TPR_17: Tetratricopep 77.6 2 4.4E-05 27.0 2.1 28 373-405 2-29 (34)
272 KOG4340 Uncharacterized conser 76.8 19 0.00041 34.9 9.1 56 299-369 19-74 (459)
273 KOG1586 Protein required for f 76.8 16 0.00035 34.2 8.3 74 286-369 29-103 (288)
274 KOG3081 Vesicle coat complex C 76.1 28 0.0006 33.3 9.9 52 303-369 186-237 (299)
275 cd02678 MIT_VPS4 MIT: domain c 76.0 31 0.00067 26.0 8.8 55 344-411 11-65 (75)
276 PF09986 DUF2225: Uncharacteri 75.1 37 0.0008 31.5 10.6 112 299-423 86-198 (214)
277 PLN03077 Protein ECB2; Provisi 74.0 21 0.00045 40.5 10.4 107 293-404 557-706 (857)
278 cd02656 MIT MIT: domain contai 73.6 36 0.00077 25.5 8.6 54 343-409 10-63 (75)
279 KOG2396 HAT (Half-A-TPR) repea 73.3 49 0.0011 34.5 11.5 90 308-417 89-202 (568)
280 COG4976 Predicted methyltransf 72.8 5.6 0.00012 37.0 4.4 56 299-369 4-59 (287)
281 KOG0292 Vesicle coat complex C 72.3 13 0.00027 41.1 7.4 57 286-342 987-1043(1202)
282 PRK10941 hypothetical protein; 71.7 18 0.00039 34.8 7.9 62 293-369 184-245 (269)
283 COG3071 HemY Uncharacterized e 71.5 74 0.0016 32.1 12.1 102 284-405 78-203 (400)
284 COG4785 NlpI Lipoprotein NlpI, 70.8 8.1 0.00018 35.7 4.9 65 290-369 99-163 (297)
285 KOG0686 COP9 signalosome, subu 70.7 43 0.00092 34.0 10.2 62 295-368 155-216 (466)
286 PRK04841 transcriptional regul 70.1 19 0.0004 41.0 9.0 30 339-368 531-560 (903)
287 KOG2561 Adaptor protein NUB1, 69.2 72 0.0016 32.7 11.5 126 287-412 160-359 (568)
288 KOG1585 Protein required for f 69.0 86 0.0019 29.8 11.2 31 295-325 36-66 (308)
289 KOG3824 Huntingtin interacting 68.3 25 0.00053 34.3 7.7 72 287-384 113-184 (472)
290 PF04184 ST7: ST7 protein; In 67.7 43 0.00092 34.9 9.8 90 280-369 181-289 (539)
291 COG5159 RPN6 26S proteasome re 67.6 97 0.0021 30.1 11.4 84 294-384 7-98 (421)
292 cd02677 MIT_SNX15 MIT: domain 67.3 52 0.0011 24.9 8.2 53 350-415 17-69 (75)
293 PRK11906 transcriptional regul 66.0 21 0.00046 36.8 7.3 64 306-384 320-406 (458)
294 KOG1941 Acetylcholine receptor 66.0 13 0.00029 36.9 5.6 28 296-323 128-155 (518)
295 PF00244 14-3-3: 14-3-3 protei 65.6 14 0.0003 34.8 5.7 54 306-367 142-197 (236)
296 COG0457 NrfG FOG: TPR repeat [ 65.4 27 0.00058 30.4 7.5 56 300-369 177-232 (291)
297 KOG1127 TPR repeat-containing 65.2 18 0.00038 40.7 6.9 60 295-369 567-626 (1238)
298 KOG1127 TPR repeat-containing 64.1 1E+02 0.0022 35.1 12.3 62 293-369 5-67 (1238)
299 cd02681 MIT_calpain7_1 MIT: do 62.8 66 0.0014 24.5 8.8 56 343-411 10-66 (76)
300 PF14561 TPR_20: Tetratricopep 62.4 74 0.0016 24.9 9.3 31 339-369 22-52 (90)
301 COG0484 DnaJ DnaJ-class molecu 61.7 1.5 3.2E-05 43.9 -1.8 56 411-468 4-61 (371)
302 PRK11906 transcriptional regul 61.5 30 0.00065 35.7 7.4 60 295-369 343-402 (458)
303 PRK04841 transcriptional regul 60.8 32 0.00069 39.1 8.5 67 294-369 695-761 (903)
304 PF10373 EST1_DNA_bind: Est1 D 60.7 26 0.00057 33.3 6.8 46 309-369 1-46 (278)
305 PF11207 DUF2989: Protein of u 60.6 23 0.0005 32.4 5.8 49 300-359 150-198 (203)
306 KOG0495 HAT repeat protein [RN 59.6 81 0.0018 34.2 10.2 104 295-403 690-865 (913)
307 PF10516 SHNi-TPR: SHNi-TPR; 59.5 17 0.00037 23.6 3.5 29 293-321 4-32 (38)
308 PF08631 SPO22: Meiosis protei 57.8 39 0.00084 32.6 7.4 62 300-368 3-65 (278)
309 KOG2114 Vacuolar assembly/sort 56.8 36 0.00079 37.5 7.4 34 289-322 367-400 (933)
310 PF07720 TPR_3: Tetratricopept 56.7 28 0.00061 22.2 4.2 28 293-320 4-33 (36)
311 KOG2053 Mitochondrial inherita 56.3 92 0.002 34.8 10.3 26 346-382 84-109 (932)
312 KOG2610 Uncharacterized conser 56.2 69 0.0015 31.8 8.5 84 286-369 98-205 (491)
313 PLN03081 pentatricopeptide (PP 55.3 53 0.0011 36.2 8.9 105 293-402 394-541 (697)
314 COG3071 HemY Uncharacterized e 55.2 39 0.00085 34.0 6.9 58 293-366 331-388 (400)
315 PF09986 DUF2225: Uncharacteri 55.1 39 0.00085 31.3 6.6 63 296-367 131-193 (214)
316 cd02684 MIT_2 MIT: domain cont 55.0 90 0.0019 23.6 8.7 52 345-409 12-63 (75)
317 KOG0276 Vesicle coat complex C 54.9 1.1E+02 0.0023 32.9 10.1 75 291-365 667-747 (794)
318 PF04781 DUF627: Protein of un 53.4 63 0.0014 26.5 6.7 28 296-323 2-29 (111)
319 PF01535 PPR: PPR repeat; Int 51.7 21 0.00047 20.8 3.0 27 341-367 2-28 (31)
320 PF14853 Fis1_TPR_C: Fis1 C-te 51.6 81 0.0018 22.1 6.2 29 295-323 6-34 (53)
321 PF15469 Sec5: Exocyst complex 49.3 78 0.0017 28.3 7.5 28 296-323 92-119 (182)
322 PLN03218 maturation of RBCL 1; 48.9 1.2E+02 0.0026 35.3 10.6 29 340-368 720-748 (1060)
323 PLN03218 maturation of RBCL 1; 48.8 1E+02 0.0022 36.0 9.9 74 295-368 547-643 (1060)
324 PF08969 USP8_dimer: USP8 dime 47.6 59 0.0013 26.7 5.9 46 277-322 25-70 (115)
325 PF04733 Coatomer_E: Coatomer 46.1 27 0.00059 34.0 4.2 67 293-384 204-270 (290)
326 KOG0985 Vesicle coat protein c 45.0 92 0.002 35.5 8.2 55 292-369 1196-1250(1666)
327 COG3629 DnrI DNA-binding trans 44.5 1.6E+02 0.0034 28.6 9.0 64 289-367 152-215 (280)
328 PF13812 PPR_3: Pentatricopept 44.2 45 0.00098 19.9 3.7 27 341-367 3-29 (34)
329 smart00101 14_3_3 14-3-3 homol 43.8 83 0.0018 29.8 6.9 54 306-367 144-199 (244)
330 PLN03081 pentatricopeptide (PP 43.4 38 0.00082 37.4 5.4 27 341-367 530-556 (697)
331 COG2909 MalT ATP-dependent tra 40.8 2.6E+02 0.0056 31.5 10.8 64 296-369 464-527 (894)
332 COG2912 Uncharacterized conser 39.8 2.2E+02 0.0048 27.3 9.1 50 335-384 177-249 (269)
333 PLN03077 Protein ECB2; Provisi 39.8 1.5E+02 0.0032 33.7 9.5 53 298-369 532-584 (857)
334 COG4105 ComL DNA uptake lipopr 39.0 3.5E+02 0.0076 25.8 12.4 93 294-402 75-214 (254)
335 PF09670 Cas_Cas02710: CRISPR- 39.0 1.4E+02 0.0031 30.2 8.3 66 290-368 131-198 (379)
336 COG0457 NrfG FOG: TPR repeat [ 38.8 1.4E+02 0.0031 25.5 7.6 24 295-318 64-87 (291)
337 TIGR00756 PPR pentatricopeptid 38.6 57 0.0012 19.2 3.5 27 341-367 2-28 (35)
338 KOG1915 Cell cycle control pro 37.5 1.9E+02 0.0041 30.2 8.6 68 302-384 85-175 (677)
339 KOG1915 Cell cycle control pro 36.8 2.7E+02 0.0058 29.2 9.5 87 302-404 378-486 (677)
340 cd02679 MIT_spastin MIT: domai 36.5 1.9E+02 0.0042 22.1 8.2 35 342-380 11-45 (79)
341 PF04010 DUF357: Protein of un 36.1 99 0.0022 23.4 5.0 40 282-321 27-66 (75)
342 PF10602 RPN7: 26S proteasome 34.5 3.3E+02 0.0072 24.2 10.4 64 335-404 32-105 (177)
343 PF09122 DUF1930: Domain of un 34.3 55 0.0012 23.7 3.1 24 219-242 34-57 (68)
344 PF02259 FAT: FAT domain; Int 34.2 3.2E+02 0.007 26.6 10.0 100 294-402 188-305 (352)
345 PF14863 Alkyl_sulf_dimr: Alky 33.7 1.4E+02 0.003 25.7 6.1 50 342-407 73-122 (141)
346 KOG0739 AAA+-type ATPase [Post 33.7 3.8E+02 0.0082 26.5 9.5 29 352-384 23-51 (439)
347 cd09240 BRO1_Alix Protein-inte 33.3 5E+02 0.011 25.9 11.6 62 306-367 215-283 (346)
348 KOG3617 WD40 and TPR repeat-co 32.9 4.1E+02 0.0089 29.9 10.6 84 296-384 918-1007(1416)
349 KOG4563 Cell cycle-regulated h 31.8 1.3E+02 0.0028 30.2 6.2 38 285-322 36-73 (400)
350 PRK13184 pknD serine/threonine 31.8 4.4E+02 0.0095 30.3 11.2 112 295-422 480-620 (932)
351 PF11817 Foie-gras_1: Foie gra 30.6 1.4E+02 0.0031 28.1 6.4 52 308-368 156-207 (247)
352 KOG4507 Uncharacterized conser 30.4 1.5E+02 0.0032 31.8 6.6 62 293-369 645-706 (886)
353 PHA02122 hypothetical protein 30.3 84 0.0018 22.1 3.4 20 68-88 39-58 (65)
354 PF02064 MAS20: MAS20 protein 30.3 1.2E+02 0.0027 25.3 5.1 40 283-322 56-95 (121)
355 KOG0713 Molecular chaperone (D 30.1 14 0.00029 36.4 -0.7 56 411-468 16-73 (336)
356 PF05843 Suf: Suppressor of fo 29.8 1.6E+02 0.0035 28.3 6.8 54 300-368 46-99 (280)
357 PF10938 YfdX: YfdX protein; 29.0 78 0.0017 27.7 4.0 70 290-367 75-145 (155)
358 KOG2709 Uncharacterized conser 29.0 2.4E+02 0.0053 28.8 7.6 28 341-368 24-51 (560)
359 COG3947 Response regulator con 28.7 2.5E+02 0.0054 27.5 7.4 75 275-364 262-338 (361)
360 COG4700 Uncharacterized protei 27.8 4.8E+02 0.01 23.9 12.3 94 294-405 128-226 (251)
361 COG2912 Uncharacterized conser 27.8 1.4E+02 0.0031 28.7 5.6 60 295-369 186-245 (269)
362 KOG3540 Beta amyloid precursor 27.0 7.5E+02 0.016 25.9 10.8 85 291-384 268-382 (615)
363 PF07079 DUF1347: Protein of u 26.8 6.8E+02 0.015 26.2 10.4 58 290-363 462-519 (549)
364 KOG1464 COP9 signalosome, subu 26.3 6.1E+02 0.013 24.6 10.3 55 302-367 39-93 (440)
365 PF13041 PPR_2: PPR repeat fam 25.0 1.4E+02 0.0031 19.9 4.0 31 339-369 3-33 (50)
366 PF10300 DUF3808: Protein of u 24.7 2E+02 0.0044 30.1 6.8 60 293-366 308-374 (468)
367 KOG2911 Uncharacterized conser 24.2 8E+02 0.017 25.3 11.6 107 288-418 254-366 (439)
368 PF14863 Alkyl_sulf_dimr: Alky 24.1 3E+02 0.0065 23.6 6.6 32 291-322 71-102 (141)
369 PRK00809 hypothetical protein; 24.0 2.5E+02 0.0054 24.2 6.1 26 217-242 23-48 (144)
370 PF12854 PPR_1: PPR repeat 23.9 1.5E+02 0.0032 18.2 3.5 26 339-364 7-32 (34)
371 PF07219 HemY_N: HemY protein 23.7 3E+02 0.0065 22.2 6.3 37 284-320 53-89 (108)
372 PRK14296 chaperone protein Dna 23.4 21 0.00045 36.2 -0.8 54 412-468 5-60 (372)
373 KOG3081 Vesicle coat complex C 23.1 5E+02 0.011 25.1 8.2 65 295-384 212-276 (299)
374 KOG2471 TPR repeat-containing 23.0 68 0.0015 33.4 2.7 95 299-398 242-378 (696)
375 TIGR02710 CRISPR-associated pr 22.4 3.7E+02 0.008 27.3 7.8 61 294-364 134-196 (380)
376 PF08424 NRDE-2: NRDE-2, neces 22.3 2.6E+02 0.0056 27.5 6.8 69 301-369 113-184 (321)
377 TIGR00985 3a0801s04tom mitocho 21.9 2.1E+02 0.0046 24.8 5.2 41 282-322 82-123 (148)
378 PF01272 GreA_GreB: Transcript 21.4 96 0.0021 23.3 2.7 23 103-125 43-65 (77)
379 KOG2300 Uncharacterized conser 21.3 9.9E+02 0.021 25.3 10.7 78 283-369 438-515 (629)
380 PHA02537 M terminase endonucle 21.0 6.7E+02 0.014 23.5 8.7 53 335-404 165-226 (230)
381 smart00386 HAT HAT (Half-A-TPR 20.9 1.2E+02 0.0026 17.4 2.7 20 304-323 1-20 (33)
382 KOG4014 Uncharacterized conser 20.6 5.6E+02 0.012 23.3 7.6 31 349-379 178-212 (248)
383 cd09034 BRO1_Alix_like Protein 20.4 8.3E+02 0.018 24.0 11.9 62 306-367 209-279 (345)
384 KOG1839 Uncharacterized protei 20.3 1.5E+02 0.0033 34.6 5.0 74 288-369 930-1003(1236)
No 1
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-60 Score=454.91 Aligned_cols=330 Identities=47% Similarity=0.770 Sum_probs=304.9
Q ss_pred ecCCccCCCCCCCEEEEEEEEEecCCcEEecc---ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCC
Q 036950 59 VEGKKWENPKDLDEVFVKYEVRLEDGTLISKS---DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRP 135 (469)
Q Consensus 59 ~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t---~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~ 135 (469)
.+|+|+..|..||.|.+||++++.||+.|+|| .|+.|.+|.|.++.||..++.+|+. |+.+.+
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~p 66 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSP 66 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCC
Confidence 37899899999999999999999999999999 5999999999999999999999998 444443
Q ss_pred CCCCCCCCCCCceEEEeEeeeeeccccccccchhhhhhhhhcCCC-CCCCc-----eEE-EEEecCCcEEEecCCCCCCc
Q 036950 136 ATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKILKEGDG-YENQM-----MVQ-WFKLHDGTVFVKKGHDEEPL 208 (469)
Q Consensus 136 ~~~~~~~ip~~~~l~~~v~l~~~~~~~dv~~d~~l~k~il~~G~g-~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p 208 (469)
+.||++++|.|+|+++ |++|+|+|+++|.| ..+|+ .|| .|.+.++ +|+++ .-.
T Consensus 67 -----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~----~~~ 126 (397)
T KOG0543|consen 67 -----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQR----ELR 126 (397)
T ss_pred -----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecc----ccc
Confidence 6799999999999997 78999999999999 67888 455 8999888 77765 455
Q ss_pred EEEEcCC-CccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEEEeeee-ecccccCCChHHH
Q 036950 209 FEFKIDE-EQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI-KEKESWDMNTQEK 286 (469)
Q Consensus 209 ~~~~lG~-~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~-~~~~~~~l~~~e~ 286 (469)
|.|.+|+ ..+|.||+.||++|++||++.|+|+|+|+||+.+... +.||||++|.|+|+|++|. +....|.|..+|+
T Consensus 127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~--p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~ 204 (397)
T KOG0543|consen 127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEP--PLIPPNATLLYEVELLDFELKEDESWKMFAEER 204 (397)
T ss_pred eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCC--CCCCCCceEEEEEEEEeeecCcccccccchHHH
Confidence 8999998 5999999999999999999999999999999655553 8999999999999999999 7889999999999
Q ss_pred HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL 366 (469)
Q Consensus 287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al 366 (469)
++.|.+.|+.||.+||.|+|..|...|.+|+.+++++...++++.+....++..||+|+|+||+|+++|..|+..|++||
T Consensus 205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 036950 367 ELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKL 423 (469)
Q Consensus 367 ~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~~ 423 (469)
+++ +.+|++|++++|+|+ +|+.+|.+|++++++++.+++++|++||+++...
T Consensus 285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk-----a~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK-----AARAELIKLKQKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 999 789999999999999 9999999999999999999999999999998876
Q ss_pred hhhhhh
Q 036950 424 EQAKSA 429 (469)
Q Consensus 424 ~~~~~~ 429 (469)
..+...
T Consensus 360 ~~k~~s 365 (397)
T KOG0543|consen 360 SAKTKS 365 (397)
T ss_pred cccccc
Confidence 554433
No 2
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.3e-29 Score=227.74 Aligned_cols=246 Identities=26% Similarity=0.360 Sum_probs=205.6
Q ss_pred chhhhhhhhhcCCCCCCCc-------eEE--EEEe-cCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEE
Q 036950 167 DKKVLKKILKEGDGYENQM-------MVQ--WFKL-HDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVAL 236 (469)
Q Consensus 167 d~~l~k~il~~G~g~~~p~-------~V~--~~~l-~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~ 236 (469)
-.++.|+|+..|+|. .|+ +.| +.+. +.++++|+| -..+.|+++.+|.-.-.|-||.+|.+|.++|.+.
T Consensus 9 ~~gv~Kril~~G~g~-l~e~~dGTrv~FHfrtl~~~e~~tviDDs-Rk~gkPmeiiiGkkFkL~VwE~il~tM~v~Evaq 86 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGE-LPEFIDGTRVIFHFRTLKCDEERTVIDDS-RKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQ 86 (329)
T ss_pred chhhhHhhccCCCcc-CccccCCceEEEEEEecccCcccccccch-hhcCCCeEEeeccccccHHHHHHHHHHhhhhHHH
Confidence 457999999999996 444 333 2222 246799988 4568999999999999999999999999999999
Q ss_pred EEEcCCC--------------ccCC--------------------CCCcccccCCCCCceEEEEEEEeeeee----cccc
Q 036950 237 VTIEPEY--------------AFGS--------------------CSSEKELAIVPANSTLFYEVELVSFIK----EKES 278 (469)
Q Consensus 237 ~~i~~~~--------------~yg~--------------------~~~~~~~~~ip~~~~l~f~vel~~~~~----~~~~ 278 (469)
|++.... +-|- .|...--......++|+|.|+|+.+.. ..+.
T Consensus 87 F~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~ 166 (329)
T KOG0545|consen 87 FWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRET 166 (329)
T ss_pred hhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcccc
Confidence 9986531 1111 000000000122368999999999984 5689
Q ss_pred cCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCH
Q 036950 279 WDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD---SSFSDEEKQQAKVLKITCNLNNAACKLKLKEY 355 (469)
Q Consensus 279 ~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~---~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~ 355 (469)
|.|+.+||+.....+.++||.+|+.|+|.+|..+|..||-++... ....+++|.++..+...+++|.|+|+++.++|
T Consensus 167 WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~ 246 (329)
T KOG0545|consen 167 WQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY 246 (329)
T ss_pred ccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999998765 23446899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 036950 356 KQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQF 412 (469)
Q Consensus 356 ~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~ 412 (469)
-+++++|+.+|..+ .+||+++|+++|.-.+ .+.++|..+..++++.++.++-.
T Consensus 247 yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas----vVsrElr~le~r~~ek~~edr~~ 322 (329)
T KOG0545|consen 247 YEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS----VVSRELRLLENRMAEKQEEDRLR 322 (329)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH----HHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999988 7899999999999886 89999999999999999999999
Q ss_pred HHHhhh
Q 036950 413 YGNIFA 418 (469)
Q Consensus 413 ~~~mf~ 418 (469)
|++||+
T Consensus 323 ~~kmfs 328 (329)
T KOG0545|consen 323 CRKMFS 328 (329)
T ss_pred HHHhcC
Confidence 999996
No 3
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.4e-28 Score=206.76 Aligned_cols=170 Identities=26% Similarity=0.441 Sum_probs=134.3
Q ss_pred EEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccc---cccccchhhh
Q 036950 95 FTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTV---SDITKDKKVL 171 (469)
Q Consensus 95 ~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~---~dv~~d~~l~ 171 (469)
|.+|.+.+++|++.+|.||+.|++..+.+||+++||..+.. .-..+++.+.++.+... ......+.+.
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 71 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG---------DLNILVITILLVLLFRASAAEKWNPDEELQ 71 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc---------cccceEEEeeeeehhhhhhhhhcCCCCcee
Confidence 35688899999999999999999999999999999954432 12245666666665432 1122334454
Q ss_pred hhhhhcCCCCCCCc----e--EE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCc
Q 036950 172 KKILKEGDGYENQM----M--VQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYA 244 (469)
Q Consensus 172 k~il~~G~g~~~p~----~--V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~ 244 (469)
-.++.+-....... + +| ++.+.||+.|||| |+++.|++|+||.++||+|||++|.+|++||+..++|||++|
T Consensus 72 I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS-~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~Lg 150 (188)
T KOG0549|consen 72 IGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSS-YSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLG 150 (188)
T ss_pred EEEEECCccccccccCCCEEEEEEEEEecCCCEEeee-ccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCcccc
Confidence 45554422211111 4 44 8999999999998 999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCCceEEEEEEEeeeeeccc
Q 036950 245 FGSCSSEKELAIVPANSTLFYEVELVSFIKEKE 277 (469)
Q Consensus 245 yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~~~ 277 (469)
||++|.+. .||++++|+|+|||+.+.+.+.
T Consensus 151 YG~~G~~~---~IP~~A~LiFdiELv~i~~~~~ 180 (188)
T KOG0549|consen 151 YGERGAPP---KIPGDAVLIFDIELVKIERGPP 180 (188)
T ss_pred CccCCCCC---CCCCCeeEEEEEEEEEeecCCC
Confidence 99999874 5999999999999999987643
No 4
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-25 Score=191.92 Aligned_cols=151 Identities=28% Similarity=0.440 Sum_probs=122.9
Q ss_pred CCCCcEEEEEeCCCCCCCCCCCCCCCCCCcceEEEEeecceeecc---ccccCCceEEEEEecCCcc-CCCCCCCEEEEE
Q 036950 1 MKKGENAVFTIPPELAYGESGSPPTIPPNAMLQFDVELLGWTSVK---DICKDGGIFKKILVEGKKW-ENPKDLDEVFVK 76 (469)
Q Consensus 1 m~~Ge~~~~~~~p~~~yg~~g~~~~ip~~~~l~f~v~l~~~~~~~---dv~~d~g~~~~i~~~G~g~-~~~~~gd~V~i~ 76 (469)
||.||++++.+||+++||..+-. .-..++|.+.++...... .-.....+...++..-... .+.+.||.|.+|
T Consensus 19 ~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~~p~~C~~kak~GD~l~~H 94 (188)
T KOG0549|consen 19 MCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLKKPEECPEKAKKGDTLHVH 94 (188)
T ss_pred hhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEECCccccccccCCCEEEEE
Confidence 89999999999999999954433 234566777665543321 1123455555555553322 577999999999
Q ss_pred EEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCCCCCceEEEe
Q 036950 77 YEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHIT 152 (469)
Q Consensus 77 y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~ 152 (469)
|++.+.||++|||| .|++|.+|.+++|+||+.+|.+|++||++.+.|||+++||++|.+ +.||++++|.|+
T Consensus 95 Y~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~-----~~IP~~A~LiFd 169 (188)
T KOG0549|consen 95 YTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGAP-----PKIPGDAVLIFD 169 (188)
T ss_pred EEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCCC-----CCCCCCeeEEEE
Confidence 99999999999998 699999999999999999999999999999999999999999975 559999999999
Q ss_pred Eeeeeecc
Q 036950 153 LEMVSWKT 160 (469)
Q Consensus 153 v~l~~~~~ 160 (469)
|+|+++..
T Consensus 170 iELv~i~~ 177 (188)
T KOG0549|consen 170 IELVKIER 177 (188)
T ss_pred EEEEEeec
Confidence 99999876
No 5
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-24 Score=211.13 Aligned_cols=295 Identities=28% Similarity=0.401 Sum_probs=210.5
Q ss_pred CCCCCCCCCCCCcceEEEEeecceeeccccccCCceEEEEEecCCc-cCCCCCCCEEEEEEEEEecCCcEEecc-ccEEE
Q 036950 18 GESGSPPTIPPNAMLQFDVELLGWTSVKDICKDGGIFKKILVEGKK-WENPKDLDEVFVKYEVRLEDGTLISKS-DGVEF 95 (469)
Q Consensus 18 g~~g~~~~ip~~~~l~f~v~l~~~~~~~dv~~d~g~~~~i~~~G~g-~~~~~~gd~V~i~y~~~~~~G~~~~~t-~~~~~ 95 (469)
|+.|+||.||++++|.|+|+++ |++|+++|+++|.| ..+|..|..|.+||++.+.++ +|+++ ..+.|
T Consensus 61 g~~~~pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~fe~ 129 (397)
T KOG0543|consen 61 GEAGSPPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELRFEF 129 (397)
T ss_pred cccCCCCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccceEE
Confidence 8999999999999999999998 79999999999999 679999999999999998666 78776 55777
Q ss_pred EECC-CccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccccccccchhhhhhh
Q 036950 96 TVGD-GYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTVSDITKDKKVLKKI 174 (469)
Q Consensus 96 ~ig~-~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~~dv~~d~~l~k~i 174 (469)
..|. ..++.||+.+|..|++||.+.|+|+|.++||+.+.. ++.|||+++|.|+|+|+++....+.+-..... .+
T Consensus 130 ~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~-e~ 204 (397)
T KOG0543|consen 130 GEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFELKEDESWKMFAE-ER 204 (397)
T ss_pred ecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeeecCcccccccchH-HH
Confidence 7777 469999999999999999999999999999954443 37899999999999999998434332111000 11
Q ss_pred hhcCCCCCCCceEEEEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccc
Q 036950 175 LKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKEL 254 (469)
Q Consensus 175 l~~G~g~~~p~~V~~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~ 254 (469)
+..++- .-+.|+.+.. -| . |..|. +..+++.-++..+..+
T Consensus 205 l~~A~~----------~ke~Gn~~fK------------~g--k----~~~A~---~~Yerav~~l~~~~~~--------- 244 (397)
T KOG0543|consen 205 LEAADR----------KKERGNVLFK------------EG--K----FKLAK---KRYERAVSFLEYRRSF--------- 244 (397)
T ss_pred HHHHHH----------HHHhhhHHHh------------hc--h----HHHHH---HHHHHHHHHhhccccC---------
Confidence 111110 0012222211 11 1 11111 1111111111111110
Q ss_pred cCCCCCceEEEEEEEeeeeecccccCCChHHHHHH---hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHH
Q 036950 255 AIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEA---AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEK 331 (469)
Q Consensus 255 ~~ip~~~~l~f~vel~~~~~~~~~~~l~~~e~~~~---a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~ 331 (469)
+. .+++... ...+.+.+-.+.|.++|..|+....++|.+-+..
T Consensus 245 -------------------------~~-ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N-------- 290 (397)
T KOG0543|consen 245 -------------------------DE-EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN-------- 290 (397)
T ss_pred -------------------------CH-HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--------
Confidence 00 1222222 2233478888999999999999999999987765
Q ss_pred HHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 036950 332 QQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQ 411 (469)
Q Consensus 332 ~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~ 411 (469)
.+.++-++.||+-+++|+.|+.++++|++++..+ ++.. . ++.+..++++....+.++.-++
T Consensus 291 -------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N--ka~~-----~-----el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 291 -------VKALYRRGQALLALGEYDLARDDFQKALKLEPSN--KAAR-----A-----ELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred -------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc--HHHH-----H-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999999333 2221 2 5667777777777778888889
Q ss_pred HHHHhhhhhh
Q 036950 412 FYGNIFAKIN 421 (469)
Q Consensus 412 ~~~~mf~~~~ 421 (469)
||.++-....
T Consensus 352 mF~k~~~~~~ 361 (397)
T KOG0543|consen 352 MFAKLAEESA 361 (397)
T ss_pred Hhhccccccc
Confidence 9999876533
No 6
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.3e-23 Score=158.31 Aligned_cols=102 Identities=32% Similarity=0.569 Sum_probs=97.3
Q ss_pred ceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCc
Q 036950 52 GIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQY 127 (469)
Q Consensus 52 g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ 127 (469)
|+.++++.+|+|...|+.|+.|++||++.+.||+.|||| .|+.|.+|.|++|+||++++..|.+|+++.+.|+|++
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~ 81 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY 81 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence 578899999999889999999999999999999999998 7999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950 128 AFGKNGRPATGDEDAVPSNANLHITLEMVSW 158 (469)
Q Consensus 128 ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 158 (469)
|||..+.+ ..||||++|+|+|+|+++
T Consensus 82 aYG~~G~p-----~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 82 AYGPRGHP-----GGIPPNATLVFDVELLKV 107 (108)
T ss_pred ccCCCCCC-----CccCCCcEEEEEEEEEec
Confidence 99999975 679999999999999976
No 7
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.6e-23 Score=158.07 Aligned_cols=100 Identities=37% Similarity=0.581 Sum_probs=91.8
Q ss_pred hhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCC
Q 036950 169 KVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPE 242 (469)
Q Consensus 169 ~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~ 242 (469)
++.+.+|+.|+|...|. +|| +|.|.||+.|||+ .+++.|+.|.+|.|.||.||++++..|.+||++.+.|+|+
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs-~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd 80 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSS-RDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPD 80 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecc-cccCCCeeEEecCcceeechhhcchhccccccceeeeccc
Confidence 35678899999977776 566 9999999999998 6889999999999999999999999999999999999999
Q ss_pred CccCCCCCcccccCCCCCceEEEEEEEeee
Q 036950 243 YAFGSCSSEKELAIVPANSTLFYEVELVSF 272 (469)
Q Consensus 243 ~~yg~~~~~~~~~~ip~~~~l~f~vel~~~ 272 (469)
||||..|.+ ..||||++|+|+|||+++
T Consensus 81 ~aYG~~G~p---~~IppNatL~FdVEll~v 107 (108)
T KOG0544|consen 81 YAYGPRGHP---GGIPPNATLVFDVELLKV 107 (108)
T ss_pred cccCCCCCC---CccCCCcEEEEEEEEEec
Confidence 999999966 589999999999999986
No 8
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=3.8e-22 Score=176.26 Aligned_cols=102 Identities=32% Similarity=0.523 Sum_probs=95.9
Q ss_pred cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950 49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK 124 (469)
Q Consensus 49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip 124 (469)
.++|+.|+++..|+| ..|..+|.|.+||+|++.||++|||| +|+.|.+| ++|+||.++|.+|++|++++++||
T Consensus 99 ~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP 175 (205)
T COG0545 99 LPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIP 175 (205)
T ss_pred CCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeC
Confidence 689999999999999 89999999999999999999999998 78888887 899999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950 125 PQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW 158 (469)
Q Consensus 125 ~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 158 (469)
|++|||..+.+ ..||||++|+|+|+|+++
T Consensus 176 ~~laYG~~g~~-----g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 176 PELAYGERGVP-----GVIPPNSTLVFEVELLDV 204 (205)
T ss_pred chhccCcCCCC-----CCCCCCCeEEEEEEEEec
Confidence 99999999864 449999999999999986
No 9
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.3e-21 Score=172.82 Aligned_cols=101 Identities=38% Similarity=0.521 Sum_probs=92.3
Q ss_pred cchhhhhhhhhcCCCCCCCc----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEc
Q 036950 166 KDKKVLKKILKEGDGYENQM----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIE 240 (469)
Q Consensus 166 ~d~~l~k~il~~G~g~~~p~----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~ 240 (469)
-++++.+++++.|+|..... +|| +|+|.||++|||+ +.++.|+.|.|| .||+||+.+|.+|++|++..++||
T Consensus 99 ~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS-~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~IP 175 (205)
T COG0545 99 LPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSS-YDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTIP 175 (205)
T ss_pred CCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCccccc-cccCCCceeecC--CeeehHHHHHhhCCCCceEEEEeC
Confidence 46789999999999975443 566 9999999999998 899999999999 999999999999999999999999
Q ss_pred CCCccCCCCCcccccCCCCCceEEEEEEEeee
Q 036950 241 PEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272 (469)
Q Consensus 241 ~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~ 272 (469)
|.+|||..+.+ ..||||++|+|+|+|+++
T Consensus 176 ~~laYG~~g~~---g~Ippns~LvFeVeLl~v 204 (205)
T COG0545 176 PELAYGERGVP---GVIPPNSTLVFEVELLDV 204 (205)
T ss_pred chhccCcCCCC---CCCCCCCeEEEEEEEEec
Confidence 99999999876 359999999999999986
No 10
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=5.7e-19 Score=154.97 Aligned_cols=150 Identities=31% Similarity=0.378 Sum_probs=136.3
Q ss_pred HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950 286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV 365 (469)
Q Consensus 286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a 365 (469)
.+..+.++|.+||.+|+.|+|..|...|+.||..++..+ .++++.||+|+|+|++|++.|+.||.+|.+|
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 378899999999999999999999999999999998653 4677999999999999999999999999999
Q ss_pred Hhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 036950 366 LELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINK 422 (469)
Q Consensus 366 l~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~ 422 (469)
|++. +.||++.++++|.+. ++++.+.++..++...+++-+. .|..++++
T Consensus 161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~-----ear~~i~rl~~~i~ernEkmKe---e~m~kLKd 232 (271)
T KOG4234|consen 161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR-----EAREAIARLPPKINERNEKMKE---EMMEKLKD 232 (271)
T ss_pred HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH-----HHHHHHHhcCHHHHHHHHHHHH---HHHHHHHH
Confidence 9998 789999999999999 9999999999998887777655 89999999
Q ss_pred chhhhhhccccccCCCccccccc-ccccchhh
Q 036950 423 LEQAKSASSMAKQEPAPMVLIAR-HDTSIKLS 453 (469)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 453 (469)
.++.-.....-..+.+.|+.+++ .+.||.+.
T Consensus 233 lGN~iL~pFGlStdnFqmvqd~nTGsySi~fk 264 (271)
T KOG4234|consen 233 LGNFILSPFGLSTDNFQMVQDPNTGSYSINFK 264 (271)
T ss_pred hhhhhcccccccccceeeeeCCCCCceeEEec
Confidence 99999988888899999999977 78888764
No 11
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.80 E-value=5.8e-19 Score=157.81 Aligned_cols=106 Identities=22% Similarity=0.342 Sum_probs=96.9
Q ss_pred ccCCceEEEEEec--CCccCCCCCCCEEEEEEEEEecCCcEEecc---ccEEEEECCCccchhHHHHHhcccCCcEEEEE
Q 036950 48 CKDGGIFKKILVE--GKKWENPKDLDEVFVKYEVRLEDGTLISKS---DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLT 122 (469)
Q Consensus 48 ~~d~g~~~~i~~~--G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t---~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ 122 (469)
.+++|+.|.++.. |+| ..|+.||.|.+||++++.+|++|+++ .|+.|.+|.+++++||+++|.+|++||+++|.
T Consensus 66 ~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~ 144 (177)
T TIGR03516 66 TSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFL 144 (177)
T ss_pred ECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEE
Confidence 3678999999976 555 68999999999999999999999988 68999999999999999999999999999999
Q ss_pred EcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeeec
Q 036950 123 VKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWK 159 (469)
Q Consensus 123 ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~ 159 (469)
|||++|||..+.+ ..||+|++|+|+|+|+++.
T Consensus 145 iP~~~AYG~~g~~-----~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 145 FPSHKAYGYYGDQ-----NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred ECHHHcCCCCCCC-----CCcCcCCcEEEEEEEEEec
Confidence 9999999998864 5699999999999999985
No 12
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.2e-19 Score=159.61 Aligned_cols=105 Identities=27% Similarity=0.445 Sum_probs=99.0
Q ss_pred cccCCceEEEEEecCCccCCCCCCCEEEEEEEEEec-CCcEEecc---ccEE-EEECCCccchhHHHHHhcccCCcEEEE
Q 036950 47 ICKDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLE-DGTLISKS---DGVE-FTVGDGYFCAALAKAVKTMKKGEKVLL 121 (469)
Q Consensus 47 v~~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~-~G~~~~~t---~~~~-~~ig~~~~~~gle~aL~gmk~Ge~~~~ 121 (469)
....+|+.|.-++-|+| ..+..|+.|.+||.+++. +|.+|+++ .|+. |.+|.+.+|+||+.++.||++|++++|
T Consensus 116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv 194 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV 194 (226)
T ss_pred eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence 34589999999999998 899999999999999997 99999988 7888 999999999999999999999999999
Q ss_pred EEcCCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950 122 TVKPQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW 158 (469)
Q Consensus 122 ~ip~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 158 (469)
+|||++|||..+.+ .||+|++|+|+|+|+.+
T Consensus 195 iIPp~lgYg~~g~~------~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 195 IIPPELGYGKKGVP------EIPPNSTLVFDVELLSV 225 (226)
T ss_pred EeCccccccccCcC------cCCCCCcEEEEEEEEec
Confidence 99999999999884 59999999999999976
No 13
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.79 E-value=1.3e-18 Score=159.41 Aligned_cols=102 Identities=27% Similarity=0.448 Sum_probs=95.3
Q ss_pred cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950 49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK 124 (469)
Q Consensus 49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip 124 (469)
+++|+.|+|+.+|+| ..|..||.|.+||++++.||++|+++ .|+.|.++ .+++||+++|.+|++|+++.|.||
T Consensus 100 t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~IP 176 (206)
T PRK11570 100 TESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTIP 176 (206)
T ss_pred CCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEEC
Confidence 689999999999999 78999999999999999999999987 68899885 699999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCCCCceEEEeEeeeee
Q 036950 125 PQYAFGKNGRPATGDEDAVPSNANLHITLEMVSW 158 (469)
Q Consensus 125 ~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~ 158 (469)
|++|||+.+.+ +.|||+++|+|+|+|++|
T Consensus 177 ~~lAYG~~g~~-----~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 177 HELAYGERGAG-----ASIPPFSTLVFEVELLEI 205 (206)
T ss_pred HHHcCCCCCCC-----CCcCCCCeEEEEEEEEEE
Confidence 99999998863 569999999999999986
No 14
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.72 E-value=5.4e-17 Score=154.13 Aligned_cols=104 Identities=32% Similarity=0.549 Sum_probs=94.5
Q ss_pred cCCceEEEEEecCCccCCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEc
Q 036950 49 KDGGIFKKILVEGKKWENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVK 124 (469)
Q Consensus 49 ~d~g~~~~i~~~G~g~~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip 124 (469)
+++|++|+|+.+|+| ..|..||.|.|||++++.||++|+++ .|+.|.+ +.+++||+++|.+|++|+++.|+||
T Consensus 144 t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~IP 220 (269)
T PRK10902 144 TSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIP 220 (269)
T ss_pred CCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEEEC
Confidence 689999999999999 78999999999999999999999987 4666655 5799999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCCCCceEEEeEeeeeeccc
Q 036950 125 PQYAFGKNGRPATGDEDAVPSNANLHITLEMVSWKTV 161 (469)
Q Consensus 125 ~~~ayg~~~~~~~~~~~~ip~~~~l~~~v~l~~~~~~ 161 (469)
++++||..+. +.||++++|+|+|+|+++...
T Consensus 221 ~~laYG~~g~------~gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 221 PELAYGKAGV------PGIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred chhhCCCCCC------CCCCCCCcEEEEEEEEEeccC
Confidence 9999999875 358999999999999998753
No 15
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.71 E-value=3.5e-17 Score=149.97 Aligned_cols=100 Identities=33% Similarity=0.413 Sum_probs=90.2
Q ss_pred cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEE
Q 036950 166 KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTI 239 (469)
Q Consensus 166 ~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i 239 (469)
.++++.++++++|+|.. |. .|| .+++.||++||++ |.++.|++|.+| .+++||+.+|.+|++|+++.|+|
T Consensus 100 t~sGl~y~vi~~G~G~~-p~~~d~V~v~Y~g~l~dG~vfdss-~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I 175 (206)
T PRK11570 100 TESGLQFRVLTQGEGAI-PARTDRVRVHYTGKLIDGTVFDSS-VARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI 175 (206)
T ss_pred CCCCcEEEEEeCCCCCC-CCCCCEEEEEEEEEECCCCEEEec-cCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence 36789999999999974 44 455 8999999999998 778899999997 79999999999999999999999
Q ss_pred cCCCccCCCCCcccccCCCCCceEEEEEEEeee
Q 036950 240 EPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272 (469)
Q Consensus 240 ~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~ 272 (469)
||++|||+.+.. +.|||+++|+|+|+|++|
T Consensus 176 P~~lAYG~~g~~---~~Ipp~s~Lif~veLl~i 205 (206)
T PRK11570 176 PHELAYGERGAG---ASIPPFSTLVFEVELLEI 205 (206)
T ss_pred CHHHcCCCCCCC---CCcCCCCeEEEEEEEEEE
Confidence 999999998864 479999999999999987
No 16
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.70 E-value=1.7e-16 Score=128.15 Aligned_cols=88 Identities=35% Similarity=0.610 Sum_probs=81.4
Q ss_pred CCCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCC
Q 036950 65 ENPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDE 140 (469)
Q Consensus 65 ~~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~ 140 (469)
.+|+.||.|.+||++++.+|++|+++ .|+.|.+|.+++++||+++|.+|++||++.|.||++++||..+...
T Consensus 3 ~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~---- 78 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP---- 78 (94)
T ss_dssp SSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT----
T ss_pred ccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC----
Confidence 46999999999999999899999987 7899999999999999999999999999999999999999987642
Q ss_pred CCCCCCceEEEeEeee
Q 036950 141 DAVPSNANLHITLEMV 156 (469)
Q Consensus 141 ~~ip~~~~l~~~v~l~ 156 (469)
..||++++|+|+|+|+
T Consensus 79 ~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 79 PKIPPNSTLVFEIELL 94 (94)
T ss_dssp TTBTTTSEEEEEEEEE
T ss_pred CCcCCCCeEEEEEEEC
Confidence 3499999999999985
No 17
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=8.1e-17 Score=150.58 Aligned_cols=105 Identities=34% Similarity=0.465 Sum_probs=98.1
Q ss_pred ChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHH
Q 036950 282 NTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKL 361 (469)
Q Consensus 282 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~ 361 (469)
+++|....|+++|++||.+.+.++|++|+.+|++||.+.|.+ ..+|+|||++|++||+|+.|+++
T Consensus 73 ~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---------------AVyycNRAAAy~~Lg~~~~AVkD 137 (304)
T KOG0553|consen 73 TPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---------------AVYYCNRAAAYSKLGEYEDAVKD 137 (304)
T ss_pred ChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---------------chHHHHHHHHHHHhcchHHHHHH
Confidence 344788999999999999999999999999999999999877 78999999999999999999999
Q ss_pred HHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950 362 CSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN 406 (469)
Q Consensus 362 ~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (469)
|..||.+| .+.|++||++||+|. ..++.|..+++++++..
T Consensus 138 ce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne-----~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 138 CESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE-----SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH-----HHHHHHHHHHHHhcCCC
Confidence 99999999 567999999999999 99999999999887766
No 18
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.2e-16 Score=145.28 Aligned_cols=101 Identities=33% Similarity=0.468 Sum_probs=88.4
Q ss_pred cchhhhhhhhhcCCCCCCCc----eEE-EEEec-CCcEEEecCCCCCCcEE-EEcCCCccchhHHHHHhccccCcEEEEE
Q 036950 166 KDKKVLKKILKEGDGYENQM----MVQ-WFKLH-DGTVFVKKGHDEEPLFE-FKIDEEQVIDGLDRAVKTMKKGEVALVT 238 (469)
Q Consensus 166 ~d~~l~k~il~~G~g~~~p~----~V~-~~~l~-~g~~~d~~~~~~~~p~~-~~lG~~~v~~gle~~L~~m~~Ge~~~~~ 238 (469)
-.++++++-++-|+|..... .|+ .|+|. +|++||++ + .+.|+. |.+|.+.||+||+.++.+|++|.+.+|+
T Consensus 118 l~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~-~-~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrvi 195 (226)
T KOG0552|consen 118 LPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSN-F-GGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRVI 195 (226)
T ss_pred cCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecc-c-CCCCccccccCCCCCCchHHHhhhhhccCCeeEEE
Confidence 35677777788899875444 344 89998 99999998 4 378888 9999999999999999999999999999
Q ss_pred EcCCCccCCCCCcccccCCCCCceEEEEEEEeee
Q 036950 239 IEPEYAFGSCSSEKELAIVPANSTLFYEVELVSF 272 (469)
Q Consensus 239 i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~ 272 (469)
|||.+|||..+.+ .||||++|+|+|+|+.+
T Consensus 196 IPp~lgYg~~g~~----~IppnstL~fdVEL~~v 225 (226)
T KOG0552|consen 196 IPPELGYGKKGVP----EIPPNSTLVFDVELLSV 225 (226)
T ss_pred eCccccccccCcC----cCCCCCcEEEEEEEEec
Confidence 9999999998876 59999999999999976
No 19
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.64 E-value=6e-16 Score=138.41 Aligned_cols=102 Identities=20% Similarity=0.314 Sum_probs=86.9
Q ss_pred cchhhhhhhhhc--CCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEE
Q 036950 166 KDKKVLKKILKE--GDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALV 237 (469)
Q Consensus 166 ~d~~l~k~il~~--G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~ 237 (469)
.++++.+.++.. |+|. .|. +++ .+++.||++|+++ +. ..|++|.+|.+.+++||+.+|.+|++||++.|
T Consensus 67 t~sGl~Y~v~~~~~g~g~-~p~~gd~V~v~Y~~~~~dG~v~~ss-~~-~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~ 143 (177)
T TIGR03516 67 SQNGFWYYYNQKDTGEGT-TPEFGDLVTFEYDIRALDGDVIYSE-EE-LGPQTYKVDQQDLFSGLRDGLKLMKEGETATF 143 (177)
T ss_pred CCCccEEEEEEecCCCCC-cCCCCCEEEEEEEEEeCCCCEEEeC-CC-CCCEEEEeCCcchhHHHHHHHcCCCCCCEEEE
Confidence 356777777765 5554 333 455 8999999999998 44 46999999999999999999999999999999
Q ss_pred EEcCCCccCCCCCcccccCCCCCceEEEEEEEeeee
Q 036950 238 TIEPEYAFGSCSSEKELAIVPANSTLFYEVELVSFI 273 (469)
Q Consensus 238 ~i~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~ 273 (469)
++||++|||..+.. ..||||++|+|+|+|+++.
T Consensus 144 ~iP~~~AYG~~g~~---~~Ippns~L~f~IeL~~i~ 176 (177)
T TIGR03516 144 LFPSHKAYGYYGDQ---NKIGPNLPIISTVTLLNIK 176 (177)
T ss_pred EECHHHcCCCCCCC---CCcCcCCcEEEEEEEEEec
Confidence 99999999998765 4799999999999999985
No 20
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.61 E-value=5.8e-15 Score=119.12 Aligned_cols=82 Identities=39% Similarity=0.591 Sum_probs=74.4
Q ss_pred eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEE
Q 036950 186 MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLF 264 (469)
Q Consensus 186 ~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~ 264 (469)
+++ .+++.+|+.|+++ +..+.|++|.+|.+.+++||+.+|.+|++||++.|++|+.++||+.+... ..||++++|+
T Consensus 12 ~i~y~~~~~~g~~~~~~-~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~--~~ip~~~~l~ 88 (94)
T PF00254_consen 12 TIHYTGRLEDGKVFDSS-YQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP--PKIPPNSTLV 88 (94)
T ss_dssp EEEEEEEETTSEEEEET-TTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT--TTBTTTSEEE
T ss_pred EEEEEEEECCCcEEEEe-eecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC--CCcCCCCeEE
Confidence 444 8888899999998 66789999999999999999999999999999999999999999988743 4599999999
Q ss_pred EEEEEe
Q 036950 265 YEVELV 270 (469)
Q Consensus 265 f~vel~ 270 (469)
|+|+|+
T Consensus 89 f~Iell 94 (94)
T PF00254_consen 89 FEIELL 94 (94)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 999986
No 21
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.59 E-value=4.3e-15 Score=141.17 Aligned_cols=102 Identities=33% Similarity=0.483 Sum_probs=90.6
Q ss_pred cchhhhhhhhhcCCCCCCCc-----eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEE
Q 036950 166 KDKKVLKKILKEGDGYENQM-----MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTI 239 (469)
Q Consensus 166 ~d~~l~k~il~~G~g~~~p~-----~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i 239 (469)
.++++.++|+++|+|. .|. .|+ .+++.||++||++ +.++.|++|.++ .++|||+.+|.+|++|+++.|+|
T Consensus 144 t~sGl~y~Vi~~G~G~-~p~~gD~V~V~Y~g~l~dG~vfdss-~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~I 219 (269)
T PRK10902 144 TSTGLLYKVEKEGTGE-APKDSDTVVVNYKGTLIDGKEFDNS-YTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI 219 (269)
T ss_pred CCCccEEEEEeCCCCC-CCCCCCEEEEEEEEEeCCCCEeecc-ccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEE
Confidence 3678999999999997 444 455 8898999999997 777899999997 69999999999999999999999
Q ss_pred cCCCccCCCCCcccccCCCCCceEEEEEEEeeeeec
Q 036950 240 EPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKE 275 (469)
Q Consensus 240 ~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~ 275 (469)
|++++||+.+.. .|||+++|+|+|+|+++...
T Consensus 220 P~~laYG~~g~~----gIppns~LvfeVeLl~V~~~ 251 (269)
T PRK10902 220 PPELAYGKAGVP----GIPANSTLVFDVELLDVKPA 251 (269)
T ss_pred CchhhCCCCCCC----CCCCCCcEEEEEEEEEeccC
Confidence 999999998753 59999999999999999753
No 22
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.2e-14 Score=140.60 Aligned_cols=162 Identities=21% Similarity=0.288 Sum_probs=141.0
Q ss_pred HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950 285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK 364 (469)
Q Consensus 285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~ 364 (469)
-..+..+.+|+.||.+||+|+|..|..+|+.||.+.|.. ....+.||.|||.++.++|+..+||.+|+.
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n-----------~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN-----------KKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc-----------cchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 355778889999999999999999999999999988765 334489999999999999999999999999
Q ss_pred HHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036950 365 VLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKIN 421 (469)
Q Consensus 365 al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~ 421 (469)
|+++| .+|+++|++++.+ . .+++.+.+++..+++.++++ |.++++...
T Consensus 313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~-----e~r~~l~~A~~aLkkSkRkd---~ykilGi~~ 383 (486)
T KOG0550|consen 313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-C-----EIRRTLREAQLALKKSKRKD---WYKILGISR 383 (486)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c-----chHHHHHHHHHHHHHhhhhh---HHHHhhhhh
Confidence 99999 6899999999888 6 79999999999988887666 899999999
Q ss_pred hchhhhhhccccccC--CCcccccccccccchhhhhheeccccccccc
Q 036950 422 KLEQAKSASSMAKQE--PAPMVLIARHDTSIKLSMIAIESTRTVLISP 467 (469)
Q Consensus 422 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (469)
...+.+++++.++.. +||+..-.+ +...+..|-++-.+-+.|-||
T Consensus 384 ~as~~eikkayrk~AL~~Hpd~~ags-q~eaE~kFkevgeAy~il~d~ 430 (486)
T KOG0550|consen 384 NASDDEIKKAYRKLALVHHPDKNAGS-QKEAEAKFKEVGEAYTILSDP 430 (486)
T ss_pred hcccchhhhHHHHHHHHhCCCcCcch-hHHHHHHHHHHHHHHHHhcCH
Confidence 999999999998877 778754443 666778888888888888776
No 23
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.53 E-value=1.1e-14 Score=137.55 Aligned_cols=164 Identities=18% Similarity=0.236 Sum_probs=141.6
Q ss_pred HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950 285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK 364 (469)
Q Consensus 285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~ 364 (469)
.+++...+..+...+....++|.+|+..|++.++.-|...... ...+--+|.||.+-+++-+||..|++
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir-----------~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR-----------YNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee-----------eeeeheeeecccccCCHHHHHHHHHH
Confidence 3567778888899999999999999999999998766532221 22333468899999999999999999
Q ss_pred HHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 036950 365 VLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKIN 421 (469)
Q Consensus 365 al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~ 421 (469)
+|+++ ++||++|++++++|. .++..++++++..++..+++ |.|+++...
T Consensus 333 vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~-----~~reGle~Akrlkkqs~kRD---YYKILGVkR 404 (504)
T KOG0624|consen 333 VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNT-----RAREGLERAKRLKKQSGKRD---YYKILGVKR 404 (504)
T ss_pred HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHHHHhccch---HHHHhhhcc
Confidence 99998 789999999999999 99999999999887776665 999999999
Q ss_pred hchhhhhhccccccC--CCcccccccc-cccchhhhhheeccccccccc
Q 036950 422 KLEQAKSASSMAKQE--PAPMVLIARH-DTSIKLSMIAIESTRTVLISP 467 (469)
Q Consensus 422 ~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 467 (469)
+..+.++.|+++|.. |||++++.+. ....+.+||.|+++++||.||
T Consensus 405 nAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~ 453 (504)
T KOG0624|consen 405 NASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDP 453 (504)
T ss_pred cccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCH
Confidence 999999999988754 9999999766 667899999999999999998
No 24
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.49 E-value=7.2e-14 Score=132.14 Aligned_cols=97 Identities=32% Similarity=0.490 Sum_probs=89.3
Q ss_pred HHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHH
Q 036950 284 QEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCS 363 (469)
Q Consensus 284 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~ 363 (469)
++.+..+..+|++||.|||+|+|.+||.||++++...++. ..+|.|||++|+|++.|..|..||+
T Consensus 91 ~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N---------------pV~~~NRA~AYlk~K~FA~AE~DC~ 155 (536)
T KOG4648|consen 91 QQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN---------------PVYHINRALAYLKQKSFAQAEEDCE 155 (536)
T ss_pred HHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCC---------------ccchhhHHHHHHHHHHHHHHHHhHH
Confidence 5678889999999999999999999999999999998876 5678999999999999999999999
Q ss_pred HHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 036950 364 KVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKE 400 (469)
Q Consensus 364 ~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~ 400 (469)
.||.+| .+|++.+|.++|++. ++++.++.+..
T Consensus 156 ~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~-----ELkK~~a~i~S 210 (536)
T KOG4648|consen 156 AAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNI-----ELKKSLARINS 210 (536)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccH-----HHHHHHHHhcc
Confidence 999999 679999999999999 88888777765
No 25
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.2e-12 Score=130.77 Aligned_cols=94 Identities=38% Similarity=0.492 Sum_probs=86.9
Q ss_pred HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
.+...|+.||++|+.|+|..|+++|++||...|.+ ..+|+|||+||+++++|..|+.||+++|++
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D---------------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED---------------ARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch---------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 47788899999999999999999999999988776 889999999999999999999999999999
Q ss_pred c-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950 369 D-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV 402 (469)
Q Consensus 369 d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 402 (469)
+ ++.|++++++||++. ++...+.++...+
T Consensus 422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~-----e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNA-----EAIDGYRRCVEAQ 473 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH-----HHHHHHHHHHHHh
Confidence 9 678999999999999 8888888887754
No 26
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.3e-12 Score=120.75 Aligned_cols=71 Identities=35% Similarity=0.479 Sum_probs=66.2
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
+.|+.+|+.||.+||.++|..|+.+|+++|..-..+++ +.+.||+|||+|++.+|+|..||.||.+|+.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----------lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~ 147 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----------LNAVLYTNRAAAQLYLGNYRSALNDCSAALK 147 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 38999999999999999999999999999998776654 4599999999999999999999999999999
Q ss_pred hc
Q 036950 368 LD 369 (469)
Q Consensus 368 ~d 369 (469)
++
T Consensus 148 ~~ 149 (390)
T KOG0551|consen 148 LK 149 (390)
T ss_pred cC
Confidence 99
No 27
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.38 E-value=6e-13 Score=116.82 Aligned_cols=70 Identities=24% Similarity=0.494 Sum_probs=65.6
Q ss_pred CCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCC
Q 036950 66 NPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRP 135 (469)
Q Consensus 66 ~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~ 135 (469)
.++.|+.|.+||++++.||++|++| .|+.|.+|.+++++||+++|.+|++|+++.|.|||+.|||+.+..
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d~~ 77 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPSPD 77 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5789999999999999999999987 689999999999999999999999999999999999999987653
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=4.5e-12 Score=125.16 Aligned_cols=77 Identities=31% Similarity=0.462 Sum_probs=72.0
Q ss_pred ccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHH
Q 036950 278 SWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQ 357 (469)
Q Consensus 278 ~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ 357 (469)
.-.|+.+++++.|..+|++||.+|+.|+|++||++|+.||.+++.. ...|+|||+||..+|+|++
T Consensus 103 ~~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~e---------------piFYsNraAcY~~lgd~~~ 167 (606)
T KOG0547|consen 103 KKAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDE---------------PIFYSNRAACYESLGDWEK 167 (606)
T ss_pred hhccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCC---------------chhhhhHHHHHHHHhhHHH
Confidence 3457889999999999999999999999999999999999999864 5689999999999999999
Q ss_pred HHHHHHHHHhhc
Q 036950 358 AEKLCSKVLELD 369 (469)
Q Consensus 358 ai~~~~~al~~d 369 (469)
++++|.+||+++
T Consensus 168 Vied~TkALEl~ 179 (606)
T KOG0547|consen 168 VIEDCTKALELN 179 (606)
T ss_pred HHHHHHHHhhcC
Confidence 999999999999
No 29
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.2e-12 Score=114.34 Aligned_cols=72 Identities=25% Similarity=0.456 Sum_probs=67.1
Q ss_pred CCCCCCEEEEEEEEEecCCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCC
Q 036950 66 NPKDLDEVFVKYEVRLEDGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPAT 137 (469)
Q Consensus 66 ~~~~gd~V~i~y~~~~~~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~ 137 (469)
.+.+||.|.++|++++.||++|++| .|+.|.+|.|++++||++||.||.+|++..|.|||+.|||++.+..+
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~~~lv 77 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYDPDLV 77 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCChHHe
Confidence 4688999999999999999999988 59999999999999999999999999999999999999999876543
No 30
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.35 E-value=1.3e-12 Score=117.81 Aligned_cols=71 Identities=25% Similarity=0.389 Sum_probs=66.6
Q ss_pred CCCCCCEEEEEEEEEecCCcEEecc---ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCC
Q 036950 66 NPKDLDEVFVKYEVRLEDGTLISKS---DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPA 136 (469)
Q Consensus 66 ~~~~gd~V~i~y~~~~~~G~~~~~t---~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~ 136 (469)
+++++++|+++|++++.+|++|++| .|+.|.+|.++++|+|+++|.+|++|++..|.|||+.|||++....
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~~l 75 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHH
Confidence 4678999999999999999999988 8999999999999999999999999999999999999999987643
No 31
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.27 E-value=1.4e-11 Score=108.14 Aligned_cols=63 Identities=27% Similarity=0.472 Sum_probs=57.7
Q ss_pred eEE-EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCC
Q 036950 186 MVQ-WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCS 249 (469)
Q Consensus 186 ~V~-~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~ 249 (469)
+++ ++++.||++||+| +.++.|+.|.+|.+++++||+.+|.+|++|+++.|.|||++|||+..
T Consensus 12 ~v~Y~~~~~dG~v~dst-~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 12 LVHFTLKLDDGSTAEST-RNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred EEEEEEEeCCCCEEEEC-CCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 455 8889999999998 66679999999999999999999999999999999999999999754
No 32
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.07 E-value=1.6e-09 Score=117.23 Aligned_cols=97 Identities=26% Similarity=0.339 Sum_probs=83.7
Q ss_pred CCCCCceEEEEEEEeeeeecccccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 036950 256 IVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAK 335 (469)
Q Consensus 256 ~ip~~~~l~f~vel~~~~~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~ 335 (469)
.+|++.++....++..+. ....|.|+.+++...|..+|+.||.+|+.|+|.+|+..|+++|.+.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~------------- 159 (615)
T TIGR00990 94 TAPKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD------------- 159 (615)
T ss_pred CCCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-------------
Confidence 356666666666665544 356799999999999999999999999999999999999999997652
Q ss_pred HHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 336 VLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 336 ~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
...|+|+|.||+++|+|++|+.+|++||+++
T Consensus 160 ---~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~ 190 (615)
T TIGR00990 160 ---PVYYSNRAACHNALGDWEKVVEDTTAALELD 190 (615)
T ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 2369999999999999999999999999998
No 33
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.4e-10 Score=103.71 Aligned_cols=100 Identities=27% Similarity=0.381 Sum_probs=79.9
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
..++++++.||.||..++|..|+.+|++||..-|.. ++.|.|+|+||+|+++|+.+..+|.+||+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~---------------~~Y~tnralchlk~~~~~~v~~dcrralq 72 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV---------------ASYYTNRALCHLKLKHWEPVEEDCRRALQ 72 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCc---------------chhhhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence 348899999999999999999999999999977654 77899999999999999999999999999
Q ss_pred hc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950 368 LD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV 402 (469)
Q Consensus 368 ~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 402 (469)
++ +..|++|+.+--+.......++-++|..++++.
T Consensus 73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~ 130 (284)
T KOG4642|consen 73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKR 130 (284)
T ss_pred cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCc
Confidence 99 566777755422111111226777777776643
No 34
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.7e-09 Score=94.63 Aligned_cols=60 Identities=32% Similarity=0.441 Sum_probs=55.3
Q ss_pred EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCC
Q 036950 189 WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCS 249 (469)
Q Consensus 189 ~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~ 249 (469)
++++.||++||+| .....|+.|.+|.+++++|||.||.+|.+|++..|.|||+.|||...
T Consensus 14 ~~~~~dg~v~Dtt-~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 14 TLKVEDGEVVDTT-DENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred EEEecCCcEEEcc-cccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 8899999999998 33467999999999999999999999999999999999999999753
No 35
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=3.4e-10 Score=108.46 Aligned_cols=136 Identities=27% Similarity=0.414 Sum_probs=117.9
Q ss_pred ccCC-ChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHH---H-HHHHHHHHHHhHhHHHHHHHHh
Q 036950 278 SWDM-NTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDE---E-KQQAKVLKITCNLNNAACKLKL 352 (469)
Q Consensus 278 ~~~l-~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e---~-~~~~~~l~~~~~~N~a~~~~kl 352 (469)
.|.+ +....++.++..|+.||..|++++|..|...|.++++++...+..... . +..+..++..++.|+|+|-+|+
T Consensus 209 ~~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~ 288 (372)
T KOG0546|consen 209 SWDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKV 288 (372)
T ss_pred cccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccc
Confidence 4444 445678889999999999999999999999999999999853222211 1 3457788899999999999999
Q ss_pred hCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950 353 KEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD 409 (469)
Q Consensus 353 ~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e 409 (469)
+.|..|+..|..+++.+ +++++.+....|++. ++.+++...+++.+++++++
T Consensus 289 ~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~-----~i~~~~~~~~~~~~~~~~~~ 363 (372)
T KOG0546|consen 289 KGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK-----AIEEELENVRQKKKQYNRKQ 363 (372)
T ss_pred cCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH-----HHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999977 788999999999999 99999999999999999999
Q ss_pred HHHHHHhhh
Q 036950 410 VQFYGNIFA 418 (469)
Q Consensus 410 ~~~~~~mf~ 418 (469)
++.+.+||+
T Consensus 364 ~~~~~k~~s 372 (372)
T KOG0546|consen 364 KKALSKMFS 372 (372)
T ss_pred HHHHHhhcC
Confidence 999999984
No 36
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.96 E-value=5.1e-09 Score=105.21 Aligned_cols=96 Identities=23% Similarity=0.296 Sum_probs=87.3
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+..++.+|+.+|..++|..|+..|.+||...+.+ ..+|.|+|.||+++|+|++|+.+|++||+++
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~ 66 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---------------AELYADRAQANIKLGNFTEAVADANKAIELD 66 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4467899999999999999999999999988765 6689999999999999999999999999998
Q ss_pred -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950 370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY 405 (469)
Q Consensus 370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~ 405 (469)
+..|+++++++|++. .+...+..+..+++..
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~-----~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDS-----RFTKLIKECDEKIAEE 120 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHHhh
Confidence 678999999999999 9999999988888544
No 37
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=98.94 E-value=3.1e-09 Score=95.93 Aligned_cols=60 Identities=17% Similarity=0.295 Sum_probs=54.5
Q ss_pred EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCC
Q 036950 189 WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSS 250 (469)
Q Consensus 189 ~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~ 250 (469)
+.++.+|++||+| +. ..|++|.+|.++++||||.+|.+|.+|++..|.|+|+.|||+...
T Consensus 14 ~l~~~dG~v~dst-~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d~ 73 (196)
T PRK10737 14 QVRTEDGVLVDES-PV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE 73 (196)
T ss_pred EEEeCCCCEEEec-CC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCCh
Confidence 6777899999998 33 689999999999999999999999999999999999999998543
No 38
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.93 E-value=2e-09 Score=81.16 Aligned_cols=65 Identities=28% Similarity=0.390 Sum_probs=59.4
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh-CHHHHHHHHHHHHhh
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK-EYKQAEKLCSKVLEL 368 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~-~~~~ai~~~~~al~~ 368 (469)
|..+...|+.++..|+|.+|+..|++|+++.+.. ..+|+|+|.||.+++ +|.+|+.++++||++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~---------------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN---------------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH---------------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 6678899999999999999999999999987754 779999999999999 799999999999976
Q ss_pred c
Q 036950 369 D 369 (469)
Q Consensus 369 d 369 (469)
+
T Consensus 68 ~ 68 (69)
T PF13414_consen 68 D 68 (69)
T ss_dssp S
T ss_pred C
Confidence 4
No 39
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=6e-09 Score=104.68 Aligned_cols=90 Identities=27% Similarity=0.330 Sum_probs=83.5
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
|..+|++||..|..|+|..|+.+|+.||.+.|.. +.+|+||++||.++++|.+|+.+..+.++++
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~n---------------hvlySnrsaa~a~~~~~~~al~da~k~~~l~ 66 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTN---------------HVLYSNRSAAYASLGSYEKALKDATKTRRLN 66 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCc---------------cchhcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 5678999999999999999999999999988764 8899999999999999999999999999998
Q ss_pred -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950 370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK 399 (469)
Q Consensus 370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~ 399 (469)
+..|.+.|+.+|+|+ .+...|..+.
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~-----~L~~gl~~a~ 114 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNK-----QLKTGLAQAY 114 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchH-----HHHHhHHHhh
Confidence 678999999999999 8888888887
No 40
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.83 E-value=1.5e-08 Score=103.89 Aligned_cols=98 Identities=16% Similarity=0.244 Sum_probs=81.9
Q ss_pred CCCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCC
Q 036950 66 NPKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAV 143 (469)
Q Consensus 66 ~~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~i 143 (469)
.+..||.|.++|+++. +|..++++ .++.|.+|.+.+++||+++|.||++|+++.|.+++...|+..+.
T Consensus 146 ~~~~gD~V~v~~~~~~-dg~~~~~~~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~--------- 215 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFI-DGEAFEGGKAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL--------- 215 (408)
T ss_pred ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC---------
Confidence 5789999999999986 89999876 88999999999999999999999999999999998878876443
Q ss_pred CCCceEEEeEeeeeeccccccccchhhhhhh
Q 036950 144 PSNANLHITLEMVSWKTVSDITKDKKVLKKI 174 (469)
Q Consensus 144 p~~~~l~~~v~l~~~~~~~dv~~d~~l~k~i 174 (469)
+|.++.|.|+|.++....-..-+..+.+.+
T Consensus 216 -~gk~~~f~v~i~~I~~~~~peldDefak~~ 245 (408)
T TIGR00115 216 -AGKEATFKVTVKEVKEKELPELDDEFAKEL 245 (408)
T ss_pred -CCCeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence 578999999999997743333345555553
No 41
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.82 E-value=6.1e-09 Score=103.82 Aligned_cols=98 Identities=23% Similarity=0.269 Sum_probs=90.4
Q ss_pred HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
.|+.+|+++|.+|+.+.|..|+..|++||++-++. +..+.|||++|+|.++|..|++||.+||++
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc---------------a~~~anRa~a~lK~e~~~~Al~Da~kaie~ 67 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNC---------------AIYFANRALAHLKVESFGGALHDALKAIEL 67 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc---------------eeeechhhhhheeechhhhHHHHHHhhhhc
Confidence 47788999999999999999999999999988766 778899999999999999999999999999
Q ss_pred c-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950 369 D-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN 406 (469)
Q Consensus 369 d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (469)
| +.+|++...+.|++. .+.+.+..++...+++.
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~-----~~~r~~~Ec~~~vs~~~ 123 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDP-----DATRKIDECNKIVSEEK 123 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcH-----HHHHHHHHHHHHHHHHh
Confidence 9 678999999999999 99999999998887654
No 42
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.8e-08 Score=102.68 Aligned_cols=97 Identities=18% Similarity=0.259 Sum_probs=80.7
Q ss_pred CCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCCC
Q 036950 67 PKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAVP 144 (469)
Q Consensus 67 ~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~ip 144 (469)
++.||.|+|+|.|+. ||..|.+. +.+.+.+|+|+++|||+.+|.||+.|++..|.+.....|.....
T Consensus 158 a~~gD~v~IDf~g~i-Dg~~fegg~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L---------- 226 (441)
T COG0544 158 AENGDRVTIDFEGSV-DGEEFEGGKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL---------- 226 (441)
T ss_pred cccCCEEEEEEEEEE-cCeeccCccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh----------
Confidence 899999999999975 99999876 89999999999999999999999999999988877777776554
Q ss_pred CCceEEEeEeeeeeccccccccchhhhhhh
Q 036950 145 SNANLHITLEMVSWKTVSDITKDKKVLKKI 174 (469)
Q Consensus 145 ~~~~l~~~v~l~~~~~~~dv~~d~~l~k~i 174 (469)
+|.+..|.|.|..+....-..-+..+.+.+
T Consensus 227 aGK~a~F~V~vkeVk~~elpEldDEfAk~~ 256 (441)
T COG0544 227 AGKEATFKVKVKEVKKRELPELDDEFAKKL 256 (441)
T ss_pred CCCceEEEEEEEEEeecCCCCCCHHHHHhc
Confidence 578899999999988744443444444443
No 43
>PRK01490 tig trigger factor; Provisional
Probab=98.74 E-value=4.9e-08 Score=101.00 Aligned_cols=97 Identities=16% Similarity=0.240 Sum_probs=80.6
Q ss_pred CCCCCCEEEEEEEEEecCCcEEecc--ccEEEEECCCccchhHHHHHhcccCCcEEEEEEcCCccccCCCCCCCCCCCCC
Q 036950 66 NPKDLDEVFVKYEVRLEDGTLISKS--DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLTVKPQYAFGKNGRPATGDEDAV 143 (469)
Q Consensus 66 ~~~~gd~V~i~y~~~~~~G~~~~~t--~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ip~~~ayg~~~~~~~~~~~~i 143 (469)
.++.||.|+++|++.. +|..|+++ .++.|.+|.+.+++||+++|.||++|+++.|.+++...|+....
T Consensus 157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l--------- 226 (435)
T PRK01490 157 PAENGDRVTIDFVGSI-DGEEFEGGKAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL--------- 226 (435)
T ss_pred cCCCCCEEEEEEEEEE-CCEECcCCCCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC---------
Confidence 5799999999999997 89998866 88999999999999999999999999999999988777866443
Q ss_pred CCCceEEEeEeeeeeccccccccchhhhhh
Q 036950 144 PSNANLHITLEMVSWKTVSDITKDKKVLKK 173 (469)
Q Consensus 144 p~~~~l~~~v~l~~~~~~~dv~~d~~l~k~ 173 (469)
+|.++.|.|+|.++....-..-+..+.+.
T Consensus 227 -agk~~~f~v~v~~V~~~~~pel~Defak~ 255 (435)
T PRK01490 227 -AGKEATFKVTVKEVKEKELPELDDEFAKK 255 (435)
T ss_pred -CCCeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence 57889999999999764333334455543
No 44
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.4e-07 Score=92.25 Aligned_cols=72 Identities=28% Similarity=0.365 Sum_probs=66.9
Q ss_pred hHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHH
Q 036950 283 TQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLC 362 (469)
Q Consensus 283 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~ 362 (469)
..+-...|+..+++||.+++.++|..|+..|+.||+.++.+ +..|.|+|+|++.+++|++|+.++
T Consensus 42 ~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~---------------a~yy~nRAa~~m~~~~~~~a~~da 106 (486)
T KOG0550|consen 42 SQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN---------------ASYYSNRAATLMMLGRFEEALGDA 106 (486)
T ss_pred cchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc---------------hhhhchhHHHHHHHHhHhhcccch
Confidence 35677889999999999999999999999999999999866 778999999999999999999999
Q ss_pred HHHHhhc
Q 036950 363 SKVLELD 369 (469)
Q Consensus 363 ~~al~~d 369 (469)
++.++++
T Consensus 107 r~~~r~k 113 (486)
T KOG0550|consen 107 RQSVRLK 113 (486)
T ss_pred hhheecC
Confidence 9999988
No 45
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=1.1e-06 Score=76.62 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---- 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---- 369 (469)
...|..+++.|+|.+|+..|.+++...+.+ ...|.|+|.++.++|+|++|+..++++++++
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQPWS---------------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 457999999999999999999999987765 6789999999999999999999999999988
Q ss_pred -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950 370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR 403 (469)
Q Consensus 370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~ 403 (469)
...|++|++++|++. .....+..++..+.
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~-----~~~~~~~~~~~~l~ 140 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADA-----SWSEIRQNAQIMVD 140 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHHH
Confidence 678999999999998 77766666655543
No 46
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1e-06 Score=80.72 Aligned_cols=236 Identities=18% Similarity=0.191 Sum_probs=151.0
Q ss_pred CCceEEEEEecCCcc-CCCCCCCEEEEEEEEEec--CCcEEecc----ccEEEEECCCccchhHHHHHhcccCCcEEEEE
Q 036950 50 DGGIFKKILVEGKKW-ENPKDLDEVFVKYEVRLE--DGTLISKS----DGVEFTVGDGYFCAALAKAVKTMKKGEKVLLT 122 (469)
Q Consensus 50 d~g~~~~i~~~G~g~-~~~~~gd~V~i~y~~~~~--~G~~~~~t----~~~~~~ig~~~~~~gle~aL~gmk~Ge~~~~~ 122 (469)
-.|+.++|+..|+|. ....+|..|++||..... .++++|+| +|+.+.+|...-.+-|+..|.+|.++|.+.|+
T Consensus 9 ~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~EvaqF~ 88 (329)
T KOG0545|consen 9 VEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVAQFW 88 (329)
T ss_pred chhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHHHhh
Confidence 368999999999983 234799999999998763 56789988 89999999999999999999999999999987
Q ss_pred EcCC--------------ccccCCCCC-------C---C-----C--CC-CCCCCCceEEEeEeeeeeccccc-------
Q 036950 123 VKPQ--------------YAFGKNGRP-------A---T-----G--DE-DAVPSNANLHITLEMVSWKTVSD------- 163 (469)
Q Consensus 123 ip~~--------------~ayg~~~~~-------~---~-----~--~~-~~ip~~~~l~~~v~l~~~~~~~d------- 163 (469)
|.-. .+-|..... . . + .. .....-++|+|.++++++..+.+
T Consensus 89 ~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~e~Wq 168 (329)
T KOG0545|consen 89 CDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQRETWQ 168 (329)
T ss_pred hhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcccccc
Confidence 7532 111211100 0 0 0 00 00112357999999999887654
Q ss_pred cccchhhhhhhhhcCCCCCCCceEEEEEecCCcEEEecCCCCCCcEEEEcCCC-ccchhHH---HHHhccccCcEEEEEE
Q 036950 164 ITKDKKVLKKILKEGDGYENQMMVQWFKLHDGTVFVKKGHDEEPLFEFKIDEE-QVIDGLD---RAVKTMKKGEVALVTI 239 (469)
Q Consensus 164 v~~d~~l~k~il~~G~g~~~p~~V~~~~l~~g~~~d~~~~~~~~p~~~~lG~~-~v~~gle---~~L~~m~~Ge~~~~~i 239 (469)
++++.......+-.+.|. .+ |..|+. ....... .||..+...|+
T Consensus 169 lsddeKmkav~~l~q~GN---------------~l------------fk~~~ykEA~~~YreAi~~l~~L~lkEk----- 216 (329)
T KOG0545|consen 169 LSDDEKMKAVPVLHQEGN---------------RL------------FKLGRYKEASSKYREAIICLRNLQLKEK----- 216 (329)
T ss_pred CCchHhhhhhHHHHHhhh---------------hh------------hhhccHHHHHHHHHHHHHHHHHHHhccC-----
Confidence 234444433333334332 11 111110 0011111 22222222221
Q ss_pred cCCCccCCCCCcccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 036950 240 EPEYAFGSCSSEKELAIVPANSTLFYEVELVSFIKEKESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNY 319 (469)
Q Consensus 240 ~~~~~yg~~~~~~~~~~ip~~~~l~f~vel~~~~~~~~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~ 319 (469)
|+. +++.+|. + ...--+.+-...+.+.++|-+++...+..|+.
T Consensus 217 -------------------P~e--------------~eW~eLd---k-~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 217 -------------------PGE--------------PEWLELD---K-MITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred -------------------CCC--------------hHHHHHH---H-hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 000 0111110 0 01112346778889999999999999999998
Q ss_pred hcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 320 IGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 320 ~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+.. .++|+-||-++...=+-.+|..|+.++|++|
T Consensus 260 ~~~n---------------vKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 260 HPGN---------------VKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred CCch---------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 7765 8889999999999999999999999999999
No 47
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.42 E-value=3.6e-06 Score=72.03 Aligned_cols=92 Identities=24% Similarity=0.267 Sum_probs=77.6
Q ss_pred hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD- 369 (469)
Q Consensus 291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d- 369 (469)
..+...|..+++.|+|.+|+..|++++...+.+ ..++.|+|.||+++++|.+|+..+++++.++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---------------SRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345689999999999999999999999977654 6688999999999999999999999999887
Q ss_pred ----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950 370 ----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV 402 (469)
Q Consensus 370 ----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 402 (469)
...|+++++++|++. .......++...+
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~ 132 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENP-----EYSELKERAEAML 132 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-----hHHHHHHHHHHHH
Confidence 567888899999988 6666666555443
No 48
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.36 E-value=2.1e-06 Score=66.12 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=60.5
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
..+..+.+.|..++..|+|++|+..|++|+.+...... .....+.++.|+|.||..+|+|++|+..+++|++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34667789999999999999999999999998543321 2334588999999999999999999999999997
Q ss_pred h
Q 036950 368 L 368 (469)
Q Consensus 368 ~ 368 (469)
+
T Consensus 75 i 75 (78)
T PF13424_consen 75 I 75 (78)
T ss_dssp H
T ss_pred h
Confidence 5
No 49
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.28 E-value=5.4e-07 Score=86.32 Aligned_cols=87 Identities=23% Similarity=0.294 Sum_probs=78.9
Q ss_pred ChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHH
Q 036950 282 NTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKL 361 (469)
Q Consensus 282 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~ 361 (469)
..+|.+++|...|-.+.+++..|.++.|+..|++||.+-+.. +.+|.+|+.+++|++.+..||++
T Consensus 106 ~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~---------------a~l~~kr~sv~lkl~kp~~airD 170 (377)
T KOG1308|consen 106 ITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPL---------------AILYAKRASVFLKLKKPNAAIRD 170 (377)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCch---------------hhhcccccceeeeccCCchhhhh
Confidence 457899999999999999999999999999999999987654 77899999999999999999999
Q ss_pred HHHHHhhc-----------------------HHHHHHHHhhCCCC
Q 036950 362 CSKVLELD-----------------------KLDIKKALEIDPDN 383 (469)
Q Consensus 362 ~~~al~~d-----------------------~~~~~~al~l~p~~ 383 (469)
|+.||+++ .+||..|++++-+.
T Consensus 171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE 215 (377)
T KOG1308|consen 171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDE 215 (377)
T ss_pred hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccH
Confidence 99999998 67899998886553
No 50
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.23 E-value=9.3e-06 Score=83.21 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=39.1
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+.+.||.+...+.++.|.+.|.+|+...+. .+..++|+|..|-.+|++++|+.++++||.++
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~---------------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPE---------------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChh---------------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 3344555555555555555555555554443 35667777777777777777777777777776
No 51
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.21 E-value=2.8e-05 Score=67.60 Aligned_cols=65 Identities=9% Similarity=0.146 Sum_probs=59.0
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+.+...|..++..|+|++|.+.|+-.+.+.+++ ..-|.|+++|+-.+|+|.+||..+.+|+.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---------------~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~ 99 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---------------FDYWFRLGECCQAQKHWGEAIYAYGRAAQIK 99 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3456789999999999999999999999988876 7789999999999999999999999998776
No 52
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.19 E-value=4.4e-06 Score=62.42 Aligned_cols=52 Identities=33% Similarity=0.463 Sum_probs=46.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950 300 LFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL 366 (469)
Q Consensus 300 ~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al 366 (469)
+++.|+|++|+..|++++...|.+ ..++.++|.||+++|+|++|...+++++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN---------------PEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS---------------HHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 578999999999999999998876 6678899999999999999998888776
No 53
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.14 E-value=6.7e-06 Score=60.92 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=50.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
..|..+++.|+|++|+..|++++...+.+ ..++.++|.|++.+|+|++|+..++++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDN---------------PEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTH---------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57899999999999999999999977654 77899999999999999999988877763
No 54
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.13 E-value=1.4e-05 Score=60.63 Aligned_cols=62 Identities=26% Similarity=0.397 Sum_probs=54.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHH
Q 036950 297 GNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKA 376 (469)
Q Consensus 297 Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~a 376 (469)
.+.+++.++|+.|+..+++++.+.|.+ ..++.++|.||.++|+|.+|+.++++++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~~a~~~~~~g~~~~A~~~l~~~l---------- 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD---------------PELWLQRARCLFQLGRYEEALEDLERAL---------- 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc---------------chhhHHHHHHHHHhccHHHHHHHHHHHH----------
Confidence 467899999999999999999998765 6788999999999999999988777766
Q ss_pred HhhCCCCC
Q 036950 377 LEIDPDNS 384 (469)
Q Consensus 377 l~l~p~~~ 384 (469)
+++|++.
T Consensus 57 -~~~p~~~ 63 (73)
T PF13371_consen 57 -ELSPDDP 63 (73)
T ss_pred -HHCCCcH
Confidence 6778776
No 55
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.10 E-value=8.5e-05 Score=61.84 Aligned_cols=71 Identities=21% Similarity=0.144 Sum_probs=65.5
Q ss_pred HHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHH
Q 036950 284 QEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCS 363 (469)
Q Consensus 284 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~ 363 (469)
..-++....+--+|..+-..|+.+.|+++|.++|.++|.. .++|+|||++|--.++.++|+++.+
T Consensus 37 ~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r---------------aSayNNRAQa~RLq~~~e~ALdDLn 101 (175)
T KOG4555|consen 37 TQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPER---------------ASAYNNRAQALRLQGDDEEALDDLN 101 (175)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc---------------hHhhccHHHHHHHcCChHHHHHHHH
Confidence 4567888888889999999999999999999999998765 7899999999999999999999999
Q ss_pred HHHhhc
Q 036950 364 KVLELD 369 (469)
Q Consensus 364 ~al~~d 369 (469)
+||++-
T Consensus 102 ~AleLa 107 (175)
T KOG4555|consen 102 KALELA 107 (175)
T ss_pred HHHHhc
Confidence 999997
No 56
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.09 E-value=1.9e-05 Score=75.84 Aligned_cols=81 Identities=27% Similarity=0.320 Sum_probs=72.9
Q ss_pred HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
-+++..+.|++++.+++|.+|+..|..|+...+.. -..++.||.+|+.+|+-.-|+.+.++||++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~---------------Y~aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNN---------------YQAIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh---------------HHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 35677899999999999999999999999976643 567789999999999999999999999998
Q ss_pred c-----------------------HHHHHHHHhhCCCCC
Q 036950 369 D-----------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 369 d-----------------------~~~~~~al~l~p~~~ 384 (469)
. ..||+.+|+.+|++.
T Consensus 102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~ 140 (504)
T KOG0624|consen 102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNG 140 (504)
T ss_pred CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcc
Confidence 7 679999999999877
No 57
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.08 E-value=2.6e-05 Score=78.52 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=60.7
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
..+..+.+.|+.||+.|+|++|+..|++||.+.+++.. ...+|+|+|.||.++|++++|+.++++||+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~ae------------A~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDE------------AQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566779999999999999999999999999886521 125699999999999999999999999999
Q ss_pred hc
Q 036950 368 LD 369 (469)
Q Consensus 368 ~d 369 (469)
+.
T Consensus 141 ls 142 (453)
T PLN03098 141 DY 142 (453)
T ss_pred hc
Confidence 74
No 58
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.07 E-value=0.00028 Score=72.47 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=63.0
Q ss_pred EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEE
Q 036950 189 WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVE 268 (469)
Q Consensus 189 ~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ve 268 (469)
.+.. +|..|+++ ...++.|.+|.+.+++||+.+|.+|++|++..|.++....|+..+. +|.++.|.|+
T Consensus 158 ~~~~-dg~~~~~~---~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~--------~gk~~~f~v~ 225 (408)
T TIGR00115 158 EGFI-DGEAFEGG---KAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL--------AGKEATFKVT 225 (408)
T ss_pred EEEE-CCEECcCC---CCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC--------CCCeEEEEEE
Confidence 5544 88888875 2579999999999999999999999999999999987777775432 5789999999
Q ss_pred Eeeeeec
Q 036950 269 LVSFIKE 275 (469)
Q Consensus 269 l~~~~~~ 275 (469)
|.++.+.
T Consensus 226 i~~I~~~ 232 (408)
T TIGR00115 226 VKEVKEK 232 (408)
T ss_pred EEEeccC
Confidence 9999854
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.92 E-value=6.4e-05 Score=73.75 Aligned_cols=80 Identities=20% Similarity=0.145 Sum_probs=71.8
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+.-+-+.|..+...|++..|+..|++|+...+.. ..+|+|+|.+|..+|+|++|+..++++|+++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 128 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDM---------------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD 128 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4557789999999999999999999999987765 6788999999999999999999999999988
Q ss_pred -----------------------HHHHHHHHhhCCCCC
Q 036950 370 -----------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 -----------------------~~~~~~al~l~p~~~ 384 (469)
.++|+++++++|++.
T Consensus 129 P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 129 PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 678999999999886
No 60
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.91 E-value=7.1e-05 Score=67.18 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=61.4
Q ss_pred HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950 285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK 364 (469)
Q Consensus 285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~ 364 (469)
.+...+..+...|..++..|+|.+|+..|.+++...+... -...++.|+|.||.++|+|++|+..+.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~~~~~~la~~~~~~g~~~~A~~~~~~ 97 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN------------DRSYILYNMGIIYASNGEHDKALEYYHQ 97 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc------------hHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556677788999999999999999999999998754321 0245789999999999999999999999
Q ss_pred HHhhc
Q 036950 365 VLELD 369 (469)
Q Consensus 365 al~~d 369 (469)
+++++
T Consensus 98 al~~~ 102 (172)
T PRK02603 98 ALELN 102 (172)
T ss_pred HHHhC
Confidence 99876
No 61
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.90 E-value=0.00012 Score=60.55 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=52.8
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
.+...|..+++.|+|.+|+..|.+++...+..+ ....++.+++.|+++.++|+.|+..++.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 68 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKST------------YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK 68 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc------------ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 456789999999999999999999998765431 12456788999999999999999988888753
No 62
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.89 E-value=3.6e-05 Score=67.02 Aligned_cols=65 Identities=11% Similarity=0.054 Sum_probs=59.2
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
...+...|..+.+.|+|++|+..|.+|+...+.+ ...++|+|.|+.++|++++|+..++++|+++
T Consensus 58 ~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~---------------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 58 WRAHIALAGTWMMLKEYTTAINFYGHALMLDASH---------------PEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3445689999999999999999999999988766 6688999999999999999999999999987
No 63
>PRK01490 tig trigger factor; Provisional
Probab=97.86 E-value=0.0015 Score=67.80 Aligned_cols=75 Identities=16% Similarity=0.244 Sum_probs=61.6
Q ss_pred EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEEEEEcCCCccCCCCCcccccCCCCCceEEEEEE
Q 036950 189 WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVALVTIEPEYAFGSCSSEKELAIVPANSTLFYEVE 268 (469)
Q Consensus 189 ~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ve 268 (469)
.+.. +|..|+++ ...++.|.+|.+.+++||+.+|.+|++|++..|.++....|+.... +|.++.|.|+
T Consensus 169 ~~~~-~g~~~~~~---~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l--------agk~~~f~v~ 236 (435)
T PRK01490 169 VGSI-DGEEFEGG---KAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL--------AGKEATFKVT 236 (435)
T ss_pred EEEE-CCEECcCC---CCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC--------CCCeEEEEEE
Confidence 5554 88888765 2578999999999999999999999999999998877666755322 4678999999
Q ss_pred Eeeeeec
Q 036950 269 LVSFIKE 275 (469)
Q Consensus 269 l~~~~~~ 275 (469)
|.++...
T Consensus 237 v~~V~~~ 243 (435)
T PRK01490 237 VKEVKEK 243 (435)
T ss_pred EEEeccC
Confidence 9999854
No 64
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.84 E-value=6.9e-05 Score=77.05 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=84.1
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
.-++.+-+.||.+-.+|++++|+..|..++++-+.. +-.|.|+|+|+...|+-..|..+|..||+
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~f---------------ida~inla~al~~~~~~~~a~~~~~~alq 178 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIELKPKF---------------IDAYINLAAALVTQGDLELAVQCFFEALQ 178 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchh---------------hHHHhhHHHHHHhcCCCcccHHHHHHHHh
Confidence 456677789999999999999999999999976654 77899999999999999999999999999
Q ss_pred hc---------------------------------------------------------HHHHHHHHhhCCCCCCcchHH
Q 036950 368 LD---------------------------------------------------------KLDIKKALEIDPDNSLEAGWG 390 (469)
Q Consensus 368 ~d---------------------------------------------------------~~~~~~al~l~p~~~~~~~~~ 390 (469)
++ ++.|++|+++||+-. +
T Consensus 179 lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~-----d 253 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL-----D 253 (966)
T ss_pred cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch-----H
Confidence 98 678999999999988 7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 036950 391 VRMEYKLLKEKVREYNK 407 (469)
Q Consensus 391 ~~~~l~~~~~~~~~~~~ 407 (469)
+.-.|-.+-+..+...+
T Consensus 254 AYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 254 AYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhHHHHHHHHhcchH
Confidence 77777666665555444
No 65
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.83 E-value=0.00018 Score=78.10 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=42.8
Q ss_pred hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
..+...|..++..|+|++|+..|.+++...+.. ...|.++|.++..+|+|++|+.+++++|+++
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~---------------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 395 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRV---------------TQSYIKRASMNLELGDPDKAEEDFDKALKLN 395 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345677889999999999999999999876644 2344455555555555555555555555544
No 66
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.79 E-value=0.00017 Score=64.41 Aligned_cols=72 Identities=17% Similarity=0.026 Sum_probs=59.7
Q ss_pred HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950 286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV 365 (469)
Q Consensus 286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a 365 (469)
.-..+..+...|..++..++|+.|+..|.+|+...+... ....++.|+|.+|.++|++++|+..|.+|
T Consensus 31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------DRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344677788999999999999999999999998754210 12458899999999999999999999988
Q ss_pred Hhhc
Q 036950 366 LELD 369 (469)
Q Consensus 366 l~~d 369 (469)
++++
T Consensus 99 l~~~ 102 (168)
T CHL00033 99 LERN 102 (168)
T ss_pred HHhC
Confidence 8654
No 67
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.74 E-value=0.00087 Score=63.67 Aligned_cols=66 Identities=12% Similarity=0.145 Sum_probs=57.5
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+-..|..+++.|+|.+|+..|++.+...|.. +......+++|.||+++++|.+|+..+++.++.+
T Consensus 34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 35678889999999999999999999988754 2335567899999999999999999999999987
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.74 E-value=0.00049 Score=63.07 Aligned_cols=100 Identities=28% Similarity=0.294 Sum_probs=74.3
Q ss_pred HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950 286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV 365 (469)
Q Consensus 286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a 365 (469)
.-+.+....+.|-.++..|++..|..-..+||+..|+. ...|+=||..|.++|+.+.|-+.+++|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~---------------~~a~~~~A~~Yq~~Ge~~~A~e~YrkA 95 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY---------------YLAHLVRAHYYQKLGENDLADESYRKA 95 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 33456667789999999999999999999999988765 445555666666666666666666666
Q ss_pred Hhhc-----------------------------------------------------------HHHHHHHHhhCCCCCCc
Q 036950 366 LELD-----------------------------------------------------------KLDIKKALEIDPDNSLE 386 (469)
Q Consensus 366 l~~d-----------------------------------------------------------~~~~~~al~l~p~~~~~ 386 (469)
|.++ .+.|+++|+++|++.
T Consensus 96 lsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~-- 173 (250)
T COG3063 96 LSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP-- 173 (250)
T ss_pred HhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--
Confidence 6665 678999999999999
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 036950 387 AGWGVRMEYKLLKEKVREY 405 (469)
Q Consensus 387 ~~~~~~~~l~~~~~~~~~~ 405 (469)
....++.+...+...+
T Consensus 174 ---~~~l~~a~~~~~~~~y 189 (250)
T COG3063 174 ---PALLELARLHYKAGDY 189 (250)
T ss_pred ---hHHHHHHHHHHhcccc
Confidence 6666666665544444
No 69
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.69 E-value=0.00027 Score=54.41 Aligned_cols=81 Identities=31% Similarity=0.393 Sum_probs=62.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHH
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLD 372 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~ 372 (469)
+...|..++..|+|.+|+..|.+++...+.. ..++.++|.|+...+++++|+..++.++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~------ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDN---------------ADAYYNLAAAYYKLGKYEEALEDYEKAL------ 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 4578999999999999999999999876543 2578899999999999999998887776
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950 373 IKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE 404 (469)
Q Consensus 373 ~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~ 404 (469)
.+.|.+. .+...+..+......
T Consensus 62 -----~~~~~~~-----~~~~~~~~~~~~~~~ 83 (100)
T cd00189 62 -----ELDPDNA-----KAYYNLGLAYYKLGK 83 (100)
T ss_pred -----hCCCcch-----hHHHHHHHHHHHHHh
Confidence 4556665 455555444444433
No 70
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.63 E-value=0.00079 Score=61.91 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=63.1
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHH-HHhhC--HHHHHHHHHHHH
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACK-LKLKE--YKQAEKLCSKVL 366 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~-~kl~~--~~~ai~~~~~al 366 (469)
+..+...|..+...|+|..|+..|.+|+.+.+.+ ..+++|+|.|+ ...|+ +++|+..+++++
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~---------------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al 137 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN---------------AELYAALATVLYYQAGQHMTPQTREMIDKAL 137 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3345678999999999999999999999988866 66788888874 66677 488888888888
Q ss_pred hhc-----------------------HHHHHHHHhhCCCCC
Q 036950 367 ELD-----------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 367 ~~d-----------------------~~~~~~al~l~p~~~ 384 (469)
+++ ...++++++++|.+.
T Consensus 138 ~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 138 ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 776 456667777766655
No 71
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.58 E-value=0.00012 Score=46.42 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=25.9
Q ss_pred HhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 340 TCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 340 ~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+|+|+|.||+.+++|++|+.+|++||+++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578999999999999999999999888654
No 72
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.57 E-value=0.0003 Score=49.61 Aligned_cols=48 Identities=33% Similarity=0.617 Sum_probs=39.2
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE 404 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~ 404 (469)
|+..+|.+++|+|+|..|..+|+.+| +++|+|. ++......++.++.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL-----------~~eP~N~-----Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALL-----------EIEPDNR-----QAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH-----------HHTTS-H-----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHH-----------hhCCCcH-----HHHHHHHHHHHHHhc
Confidence 56789999999999999999988877 8999999 888888877776653
No 73
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.53 E-value=0.0024 Score=60.04 Aligned_cols=68 Identities=21% Similarity=0.267 Sum_probs=57.9
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+..+...|..+++.|+|..|+..|.+++...+..+ .....++++|.||+++++|++|+..++++++.+
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~------------~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP------------YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH 100 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch------------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 44567899999999999999999999999877542 224568899999999999999999999998765
No 74
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.52 E-value=0.0011 Score=60.84 Aligned_cols=100 Identities=13% Similarity=0.048 Sum_probs=81.8
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc------------
Q 036950 302 KAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD------------ 369 (469)
Q Consensus 302 k~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d------------ 369 (469)
..++..+++..|.+++...+.+ ...|.++|.+|+.+++|++|+..++++++++
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~---------------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~ 115 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQN---------------SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT 115 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3677788888999999887766 6789999999999999999999999999998
Q ss_pred --------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 036950 370 --------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINK 422 (469)
Q Consensus 370 --------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~ 422 (469)
.+.++++++++|++. .+...+.........+.+... .|.+++.....
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~dP~~~-----~al~~LA~~~~~~g~~~~Ai~-~~~~aL~l~~~ 176 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALDANEV-----TALMLLASDAFMQADYAQAIE-LWQKVLDLNSP 176 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhCCCCh-----hHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCC
Confidence 456888999999999 888888888777666665553 46777665443
No 75
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.52 E-value=0.0023 Score=59.01 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=74.4
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+..+-..|..+|..|+|.+|+..|++.+...|..+- ...+.+.+|.||++.++|..|+..+++.++..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 456778999999999999999999999998886532 24567899999999999999999999999876
Q ss_pred -------------------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950 370 -------------------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN 406 (469)
Q Consensus 370 -------------------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (469)
+..|+..++..|++. -..+++..+..++.++.+..
T Consensus 73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~--y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE--YAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST--THHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch--HHHHHHHHHHHHHHHHHHHH
Confidence 224666677788876 11145555556655555444
No 76
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.52 E-value=0.0012 Score=74.47 Aligned_cols=88 Identities=3% Similarity=-0.077 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---- 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---- 369 (469)
...|..+.+.|++++|+..|.+++...|.. ..+++|++.++..+|++++|+..++++++++
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~---------------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEPNN---------------SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 345556666666666666666666655544 4577788888888888888888888888776
Q ss_pred -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 036950 370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEK 401 (469)
Q Consensus 370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~ 401 (469)
...|++|++++|++. .+......+...
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a-----~i~~~~g~~~~~ 723 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQA-----LITPLTPEQNQQ 723 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCc-----hhhhhhhHHHHH
Confidence 567888888888887 666555544443
No 77
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.49 E-value=0.00031 Score=61.18 Aligned_cols=63 Identities=16% Similarity=0.016 Sum_probs=55.3
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
+.-+...|-.+-..|+|.+|+..|.+|+.+-+++ ...+.|+|.||+++|+...|...++.||.
T Consensus 69 ~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd---------------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 69 FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA---------------PQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---------------chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445678888889999999999999999988876 56789999999999999999998888874
No 78
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.48 E-value=0.0015 Score=60.07 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=56.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---- 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---- 369 (469)
...|..++..|++.+|+..|.+++...+.. ...+.|++.+|+.+|+|++|+..+.+++...
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNPNN---------------GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 345556666666666666666666554332 3456777888888888888888888777632
Q ss_pred ---------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950 370 ---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV 402 (469)
Q Consensus 370 ---------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 402 (469)
...+.+++..+|++. .+...+..+....
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~ 182 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP-----ESLLELAELYYLR 182 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh-----HHHHHHHHHHHHc
Confidence 456777777777776 5555555554443
No 79
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.00022 Score=74.13 Aligned_cols=111 Identities=17% Similarity=0.138 Sum_probs=77.7
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC----------CCCHHHHHHHHHHH---------HHhHhHHHHHHH
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDS----------SFSDEEKQQAKVLK---------ITCNLNNAACKL 350 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~----------~~~~e~~~~~~~l~---------~~~~~N~a~~~~ 350 (469)
-+.+...||.+--+++++.|++++++|+.+.+.+. ...+|-.....-.+ -.+|+-+++.|+
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 34667899999999999999999999999888541 11122222222111 236777888999
Q ss_pred HhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950 351 KLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY 405 (469)
Q Consensus 351 kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~ 405 (469)
|+++|+.|..++.+|++++ +.-+++|+.+||.|. -.+=+...+...+..+
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~-----l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP-----LCKYHRASILFSLGRY 573 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc-----hhHHHHHHHHHhhcch
Confidence 9999999999888888888 566888888888887 4444444444443333
No 80
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.41 E-value=0.0008 Score=67.77 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=58.1
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+..+|..+++.|+|.+|+..|.+|+.+.+.. ..+|+++|.||+++|+|++|+.+++++|+++
T Consensus 38 a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~---------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 38 LYADRAQANIKLGNFTEAVADANKAIELDPSL---------------AKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 45688999999999999999999999987754 6689999999999999999999999999998
No 81
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.36 E-value=0.00089 Score=57.03 Aligned_cols=63 Identities=22% Similarity=0.107 Sum_probs=56.9
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+...|..+++.|+|.+|+..|.+++...+.. ...+.|+|.||..+|++++|+..++++++++
T Consensus 53 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 53 YWLGLAACCQMLKEYEEAIDAYALAAALDPDD---------------PRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44578999999999999999999999976654 5678999999999999999999999999998
No 82
>PRK12370 invasion protein regulator; Provisional
Probab=97.34 E-value=0.0018 Score=69.20 Aligned_cols=61 Identities=15% Similarity=0.026 Sum_probs=52.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
...|..+...|+|++|+..|++|+.+.|.+ ..+|+++|.+|..+|++++|+..++++++++
T Consensus 342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 342 GLLGLINTIHSEYIVGSLLFKQANLLSPIS---------------ADIKYYYGWNLFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 356888888999999999999999987765 5678899999999999999999999999888
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.27 E-value=0.0017 Score=63.73 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=58.6
Q ss_pred hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
..+...|..+...|+|+.|+..|.+++++.+.. ...+.|++.++..+|+|++|+.+++++++++
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------------NYAYLNRGIALYYGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 455689999999999999999999999987765 6688999999999999999999999999987
No 84
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.27 E-value=0.00046 Score=69.87 Aligned_cols=71 Identities=30% Similarity=0.250 Sum_probs=64.2
Q ss_pred HHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh---CHHHHHH
Q 036950 284 QEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK---EYKQAEK 360 (469)
Q Consensus 284 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~---~~~~ai~ 360 (469)
-|..+.+++.|++||..|-.+.+..|+..|++++.+.+.. +.+|.|+|++++|.+ +.-.|+.
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------------~~~l~nraa~lmkRkW~~d~~~Alr 432 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------------IYLLENRAAALMKRKWRGDSYLALR 432 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------------hHHHHhHHHHHHhhhccccHHHHHH
Confidence 4566789999999999999999999999999999987643 789999999999975 7788999
Q ss_pred HHHHHHhhc
Q 036950 361 LCSKVLELD 369 (469)
Q Consensus 361 ~~~~al~~d 369 (469)
+|..||++|
T Consensus 433 Dch~Alrln 441 (758)
T KOG1310|consen 433 DCHVALRLN 441 (758)
T ss_pred hHHhhccCC
Confidence 999999999
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.24 E-value=0.0028 Score=66.01 Aligned_cols=77 Identities=22% Similarity=0.185 Sum_probs=65.0
Q ss_pred HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950 286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV 365 (469)
Q Consensus 286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a 365 (469)
.+..+..++..|+.+...++|.+|+..|.+|+......-..+ .+..+..+.|||..|.+.|+|.+|..+|++|
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 345566667899999999999999999999999886432222 4556889999999999999999999999999
Q ss_pred Hhhc
Q 036950 366 LELD 369 (469)
Q Consensus 366 l~~d 369 (469)
+++-
T Consensus 310 l~I~ 313 (508)
T KOG1840|consen 310 LEIY 313 (508)
T ss_pred HHHH
Confidence 9886
No 86
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0028 Score=64.93 Aligned_cols=58 Identities=29% Similarity=0.234 Sum_probs=50.6
Q ss_pred HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHH
Q 036950 339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEY 395 (469)
Q Consensus 339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l 395 (469)
..+++|++.+|-|++.|.+||.+++++|.+. ...|.++|.+.|+|. -+...|
T Consensus 455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~-----~~~~lL 529 (611)
T KOG1173|consen 455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI-----FISELL 529 (611)
T ss_pred hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH-----HHHHHH
Confidence 4568999999999999999999999999987 678999999999998 777777
Q ss_pred HHHHHH
Q 036950 396 KLLKEK 401 (469)
Q Consensus 396 ~~~~~~ 401 (469)
..+-..
T Consensus 530 ~~aie~ 535 (611)
T KOG1173|consen 530 KLAIED 535 (611)
T ss_pred HHHHHh
Confidence 765443
No 87
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.22 E-value=0.00076 Score=50.28 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=38.6
Q ss_pred HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950 339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR 403 (469)
Q Consensus 339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~ 403 (469)
+..|.++|.+++.+++|++|+.+++++| +++|++. .+.-.+..+...+.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai-----------~~~p~~~-----~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAI-----------ELDPNNA-----EAYYNLGLAYMKLG 51 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHH-----------HHSTTHH-----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------HcCCCCH-----HHHHHHHHHHHHhC
Confidence 4578999999999999999999888777 5667776 66666666655554
No 88
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.21 E-value=0.0059 Score=56.07 Aligned_cols=79 Identities=25% Similarity=0.410 Sum_probs=62.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--- 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--- 369 (469)
+...|..++..|+|.+|+..|.+++...... .....+.|+|.||..+|++++|+..++++++.+
T Consensus 102 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-------------QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhccccc-------------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 4567889999999999999999999742211 124567889999999999999999999999877
Q ss_pred --------------------HHHHHHHHhhCCCCC
Q 036950 370 --------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 --------------------~~~~~~al~l~p~~~ 384 (469)
...+++++.+.|.+.
T Consensus 169 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 203 (234)
T TIGR02521 169 PESLLELAELYYLRGQYKDARAYLERYQQTYNQTA 203 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 455677777766665
No 89
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.21 E-value=0.003 Score=58.99 Aligned_cols=93 Identities=17% Similarity=0.173 Sum_probs=73.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---- 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---- 369 (469)
+..|..+|+.|+|..|+..++++...-+.+ ..+|+=++.||.++|+++.|-..+.+++++.
T Consensus 104 ~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d---------------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p 168 (257)
T COG5010 104 AAQGKNQIRNGNFGEAVSVLRKAARLAPTD---------------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP 168 (257)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhccCCCC---------------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc
Confidence 449999999999999999999999988776 6678889999999999999999999999988
Q ss_pred -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950 370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN 406 (469)
Q Consensus 370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (469)
...+..+...-+.|. .+...|..+........
T Consensus 169 ~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~-----~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 169 SIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS-----RVRQNLALVVGLQGDFR 219 (257)
T ss_pred hhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch-----HHHHHHHHHHhhcCChH
Confidence 223444444455566 77777776655544333
No 90
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.20 E-value=0.0031 Score=71.29 Aligned_cols=73 Identities=11% Similarity=0.137 Sum_probs=59.0
Q ss_pred HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHH
Q 036950 339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEY 395 (469)
Q Consensus 339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l 395 (469)
..+|.|+|.++.++|++++|+..++++++++ +..|+++++++|++. .+...+
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~-----~a~~nL 683 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP-----ALIRQL 683 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHH
Confidence 4578999999999999999999999999998 567999999999999 888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 036950 396 KLLKEKVREYNKKDVQFYGNIF 417 (469)
Q Consensus 396 ~~~~~~~~~~~~~e~~~~~~mf 417 (469)
..+...+....+... .|.+.+
T Consensus 684 A~al~~lGd~~eA~~-~l~~Al 704 (987)
T PRK09782 684 AYVNQRLDDMAATQH-YARLVI 704 (987)
T ss_pred HHHHHHCCCHHHHHH-HHHHHH
Confidence 877766665554443 244443
No 91
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.016 Score=59.65 Aligned_cols=73 Identities=22% Similarity=0.267 Sum_probs=56.9
Q ss_pred EEEecCCcEEEecCCCCCCcEEEEcCCCccchhHHHHHhccccCcEEE--EEEcCCCccCCCCCcccccCCCCCceEEEE
Q 036950 189 WFKLHDGTVFVKKGHDEEPLFEFKIDEEQVIDGLDRAVKTMKKGEVAL--VTIEPEYAFGSCSSEKELAIVPANSTLFYE 266 (469)
Q Consensus 189 ~~~l~~g~~~d~~~~~~~~p~~~~lG~~~v~~gle~~L~~m~~Ge~~~--~~i~~~~~yg~~~~~~~~~~ip~~~~l~f~ 266 (469)
.| .-||..|... ..+.+.|.||.|.+|||++.+|.+|+.|+... +++|.+|.-++. .|.+..|.
T Consensus 169 ~g-~iDg~~fegg---~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L----------aGK~a~F~ 234 (441)
T COG0544 169 EG-SVDGEEFEGG---KAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL----------AGKEATFK 234 (441)
T ss_pred EE-EEcCeeccCc---cccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh----------CCCceEEE
Confidence 45 4578788764 35779999999999999999999999999977 455655543332 45678999
Q ss_pred EEEeeeeec
Q 036950 267 VELVSFIKE 275 (469)
Q Consensus 267 vel~~~~~~ 275 (469)
|+|..+...
T Consensus 235 V~vkeVk~~ 243 (441)
T COG0544 235 VKVKEVKKR 243 (441)
T ss_pred EEEEEEeec
Confidence 999999853
No 92
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.17 E-value=0.0035 Score=72.99 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=17.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYD 323 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~ 323 (469)
.|..++..|+|++|+..|++++...+.+
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~ 302 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKD 302 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3666666666666666666666655543
No 93
>PRK15331 chaperone protein SicA; Provisional
Probab=97.16 E-value=0.0071 Score=53.06 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=56.1
Q ss_pred hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+.+...|-.+|..|+|.+|...|+-...+.+++ ...+..+|+|+.-+++|++|+..+..|..++
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n---------------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~ 101 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYN---------------PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL 101 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 455678899999999999999999888876655 4467999999999999999999999999887
No 94
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.16 E-value=0.00094 Score=52.08 Aligned_cols=58 Identities=26% Similarity=0.290 Sum_probs=44.1
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV 365 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a 365 (469)
-+...|..+|+.|+|.+|+..+++ +...+. ...++.-+|.|++++|+|++|+....++
T Consensus 27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~---------------~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPS---------------NPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC---------------HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC---------------CHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 345579999999999999999988 443321 1345556699999999999999988765
No 95
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.00048 Score=68.49 Aligned_cols=65 Identities=22% Similarity=0.271 Sum_probs=59.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+.||-+|++.+|.+|++.|+.||...|... +.+++++++|++.++.++|+|++||..++.+++..
T Consensus 242 nigni~~kkr~fskaikfyrmaldqvpsin----------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~ 306 (840)
T KOG2003|consen 242 NIGNIHFKKREFSKAIKFYRMALDQVPSIN----------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA 306 (840)
T ss_pred eecceeeehhhHHHHHHHHHHHHhhccccc----------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC
Confidence 789999999999999999999999887652 56789999999999999999999999999999876
No 96
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.07 E-value=0.007 Score=51.86 Aligned_cols=66 Identities=20% Similarity=0.252 Sum_probs=56.6
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+-..|.+.++.|+|..|+..++......|..+- ...+.++++-+|++.++|..|+..+++-|+++
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y------------a~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY------------AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4568889999999999999999999988876532 24567899999999999999999998888776
No 97
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.05 E-value=0.0048 Score=67.38 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=58.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHH----HHHHHHHHHhhc--
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQ----AEKLCSKVLELD-- 369 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~----ai~~~~~al~~d-- 369 (469)
.|..+++.|+|.+|+..|.+++...+.+ ..++.|+|.+|..+|++++ |+..++++++++
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~---------------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDG---------------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 4677888889999999999888865543 4456667777777777664 677777777665
Q ss_pred ---------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 036950 370 ---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEK 401 (469)
Q Consensus 370 ---------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~ 401 (469)
...+++++.++|++. .+...+..+...
T Consensus 283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~-----~a~~~La~~l~~ 330 (656)
T PRK15174 283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP-----YVRAMYARALRQ 330 (656)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH
Confidence 455666667777766 555555444433
No 98
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0039 Score=62.58 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=80.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc------
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD------ 369 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d------ 369 (469)
.||-+--++++++|+..|++|+++.+.. ..+|.=++.-|+.|++-..||..++.|++++
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~---------------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA 400 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKY---------------LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA 400 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcch---------------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence 6898889999999999999999987754 7788889999999999999999999999998
Q ss_pred -----------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950 370 -----------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD 409 (469)
Q Consensus 370 -----------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e 409 (469)
+-.|++|+++-|+|. .+...|..|-.++....+..
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs-----Rlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDS-----RLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcCCCch-----HHHHHHHHHHHHhccHHHHH
Confidence 667999999999999 88888888776665544433
No 99
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.03 E-value=0.004 Score=60.57 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=57.2
Q ss_pred HHhhhcHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950 288 EAAGKKKEEGNVLFKA-GKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL 366 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~-~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al 366 (469)
..|..+.+.|..+... ++++.|+..|++|+.++.... .......++.++|.++.++++|++|+..+++++
T Consensus 112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~---------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG---------SPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3466667788888888 899999999999999986432 234457789999999999999999999999998
Q ss_pred hhc
Q 036950 367 ELD 369 (469)
Q Consensus 367 ~~d 369 (469)
...
T Consensus 183 ~~~ 185 (282)
T PF14938_consen 183 KKC 185 (282)
T ss_dssp HTC
T ss_pred HHh
Confidence 753
No 100
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.02 E-value=0.023 Score=53.37 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=83.5
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+..+.++|....+.|+|.+|++.|.......+..+- .-++.+.++-+|+|-++|+.|+...++-+.+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~------------~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly 101 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPY------------SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY 101 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc------------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 556789999999999999999999999987775532 24456788999999999999999999999887
Q ss_pred ----------------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036950 370 ----------------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNK 407 (469)
Q Consensus 370 ----------------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (469)
..+|+..+.--|+.+ =..+++..+..++..+...+-
T Consensus 102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~--Ya~dA~~~i~~~~d~LA~~Em 171 (254)
T COG4105 102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR--YAPDAKARIVKLNDALAGHEM 171 (254)
T ss_pred CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc--chhhHHHHHHHHHHHHHHHHH
Confidence 678899999999977 111666777777776665553
No 101
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.002 Score=61.39 Aligned_cols=68 Identities=29% Similarity=0.267 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---- 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---- 369 (469)
-+++-.|.+.|.|..|++-...||.+.+. +.++|.-++++|+-+|+|.+|++.+.+||++|
T Consensus 119 cNRAAAy~~Lg~~~~AVkDce~Al~iDp~---------------yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 119 CNRAAAYSKLGEYEDAVKDCESALSIDPH---------------YSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcChH---------------HHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcH
Confidence 37889999999999999999999998764 48999999999999999999999999999999
Q ss_pred --HHHHHHH
Q 036950 370 --KLDIKKA 376 (469)
Q Consensus 370 --~~~~~~a 376 (469)
+.+++.|
T Consensus 184 ~~K~nL~~A 192 (304)
T KOG0553|consen 184 SYKSNLKIA 192 (304)
T ss_pred HHHHHHHHH
Confidence 4455555
No 102
>PLN02789 farnesyltranstransferase
Probab=96.96 E-value=0.0092 Score=59.04 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=64.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh-CHHHHHHHHHHHHhhc---------
Q 036950 300 LFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK-EYKQAEKLCSKVLELD--------- 369 (469)
Q Consensus 300 ~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~-~~~~ai~~~~~al~~d--------- 369 (469)
+.+.+++.+|+..|.++|.+.+.. .+++.+|+.|+.+++ .+++++..++++++.+
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~---------------ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~ 111 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGN---------------YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH 111 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence 556789999999999999987755 667888888888887 5788888888888777
Q ss_pred ----------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950 370 ----------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE 404 (469)
Q Consensus 370 ----------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~ 404 (469)
+..+.++++++|.|. .+.....-+-..+..
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy-----~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNY-----HAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHhhh
Confidence 334567788888887 666655555554443
No 103
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.96 E-value=0.01 Score=56.97 Aligned_cols=63 Identities=10% Similarity=0.020 Sum_probs=49.9
Q ss_pred HHHHHHH-HhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 294 KEEGNVL-FKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 294 k~~Gn~~-fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
.+.+-.+ ++.|+|.+|+..|+..+...|... ....+++-+|.+|+..++|++|+..+.++++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~------------~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~ 209 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDST------------YQPNANYWLGQLNYNKGKKDDAAYYFASVVKN 209 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555565 667999999999999999888652 12446788999999999999999888877743
No 104
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.93 E-value=0.008 Score=70.06 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=43.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
...|..+++.|++.+|+..|++++...+.+ ..++.++|.+|..+|+|++|+..++++|+++
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~---------------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTD---------------SYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345777778888888888888888776543 3456677777777777777777777777654
No 105
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.92 E-value=0.0018 Score=50.47 Aligned_cols=49 Identities=29% Similarity=0.400 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950 303 AGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK 364 (469)
Q Consensus 303 ~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~ 364 (469)
.++|+.|+..|.+++...+.++ ....+.++|.||+++|+|++|+..+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5899999999999999876421 245778899999999999999998887
No 106
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.87 E-value=0.0021 Score=40.46 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=24.6
Q ss_pred HhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 340 TCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 340 ~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
..+.++|.||+++|+|++|+.++++++++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999988888754
No 107
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.86 E-value=0.0038 Score=60.06 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=71.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc------
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD------ 369 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d------ 369 (469)
.|..+|-.++-+-|++.|.+.|.+=-.. ..+++|+++|.+.-++|+-++..+.+|+..-
T Consensus 330 ia~~yfY~~~PE~AlryYRRiLqmG~~s---------------peLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a 394 (478)
T KOG1129|consen 330 IAVGYFYDNNPEMALRYYRRILQMGAQS---------------PELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA 394 (478)
T ss_pred eeeccccCCChHHHHHHHHHHHHhcCCC---------------hHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence 4555666667777777777777654333 4589999999999999999999999999765
Q ss_pred --------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950 370 --------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY 405 (469)
Q Consensus 370 --------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~ 405 (469)
.++|+-||..||++. ++...|..++.+...-
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~-----ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG-----EALNNLAVLAARSGDI 445 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhccCcchH-----HHHHhHHHHHhhcCch
Confidence 678999999999999 8888888887655443
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.86 E-value=0.013 Score=63.95 Aligned_cols=98 Identities=3% Similarity=-0.128 Sum_probs=73.6
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+..+...|......|+|++|...|..++.+.|.. +.++.|+|.++.+++++++|+..|+++|..+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---------------~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---------------SEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 4556677888888888888888888888888765 6777888888888888888888888888877
Q ss_pred -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036950 370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNK 407 (469)
Q Consensus 370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (469)
...|++++..+|++. .+.-.+..+-+...+..+
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~-----~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFE-----NGYVGWAQSLTRRGALWR 206 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHcCCHHH
Confidence 566788888778777 666555555554444433
No 109
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.85 E-value=0.019 Score=58.22 Aligned_cols=77 Identities=18% Similarity=0.124 Sum_probs=57.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--- 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--- 369 (469)
+...|..+++.+++.+|+..|.+++...+.. ..++.+++.+|.++|++++|+..++++++.+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQC---------------VRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 4567777888889999999998888865533 3466778888888888888888888888654
Q ss_pred ---------------------HHHHHHHHhhCCCCC
Q 036950 370 ---------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 ---------------------~~~~~~al~l~p~~~ 384 (469)
...+++++..+|++.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 445666777777665
No 110
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.81 E-value=0.0028 Score=67.46 Aligned_cols=92 Identities=33% Similarity=0.456 Sum_probs=77.5
Q ss_pred ChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHh--hCHHHHH
Q 036950 282 NTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL--KEYKQAE 359 (469)
Q Consensus 282 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl--~~~~~ai 359 (469)
+...-+.++..++++||.+|++++|..|.-.|..++.+++.+. ...+.+++|++.||+.+ ++|..++
T Consensus 45 di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~-----------~~~a~~~~~~~s~~m~~~l~~~~~~~ 113 (748)
T KOG4151|consen 45 DIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDH-----------HVVATLRSNQASCYMQLGLGEYPKAI 113 (748)
T ss_pred chHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccc-----------hhhhhHHHHHHHHHhhcCccchhhhc
Confidence 4556788999999999999999999999999999999998653 23488999999999876 5899999
Q ss_pred HHHHHHHhhc-----------------------HHHHHHHHhhCCCCC
Q 036950 360 KLCSKVLELD-----------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 360 ~~~~~al~~d-----------------------~~~~~~al~l~p~~~ 384 (469)
..|+-|+... .+|+.-....+|++.
T Consensus 114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~ 161 (748)
T KOG4151|consen 114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNV 161 (748)
T ss_pred CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 9999999877 345566667788886
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.78 E-value=0.0021 Score=66.05 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=53.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC-------------CCHHHH------HHHHHHHHHhHhHHHHHHHHhh
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSS-------------FSDEEK------QQAKVLKITCNLNNAACKLKLK 353 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~-------------~~~e~~------~~~~~l~~~~~~N~a~~~~kl~ 353 (469)
.--.|.-++-.++|++|+.+|+.||..-|.+.. -+.|-. -++++-++.+.+|+|.||+.+|
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG 512 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG 512 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh
Confidence 346778888888888888888888887766521 111111 1233344667888888888888
Q ss_pred CHHHHHHHHHHHHhhc
Q 036950 354 EYKQAEKLCSKVLELD 369 (469)
Q Consensus 354 ~~~~ai~~~~~al~~d 369 (469)
-|++|+.++-.||.+.
T Consensus 513 ~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 513 AYKEAVKHLLEALSMQ 528 (579)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 8888888888888665
No 112
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.76 E-value=0.017 Score=58.50 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=21.5
Q ss_pred HhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 340 TCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 340 ~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.++++++.++++++++++|+..++++++.+
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 345677777777777777777777777655
No 113
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.74 E-value=0.008 Score=49.41 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=57.5
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHH
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKL 371 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~ 371 (469)
.....|..+++.++|+.|+..|.+++...+..+.. ..++.++|.|+.+++++++|+..+++++
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~----- 103 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA------------PDALLKLGMSLQELGDKEKAKATLQQVI----- 103 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc------------cHHHHHHHHHHHHhCChHHHHHHHHHHH-----
Confidence 34568999999999999999999999987654221 4468999999999999999988777766
Q ss_pred HHHHHHhhCCCCC
Q 036950 372 DIKKALEIDPDNS 384 (469)
Q Consensus 372 ~~~~al~l~p~~~ 384 (469)
+..|++.
T Consensus 104 ------~~~p~~~ 110 (119)
T TIGR02795 104 ------KRYPGSS 110 (119)
T ss_pred ------HHCcCCh
Confidence 6678776
No 114
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.74 E-value=0.015 Score=63.46 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=59.2
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 294 KEEGNVLFKAGKYER----ASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~----A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
...|..++..|+|.+ |+..|++++...|.+ ..++.|+|.+++++|+|++|+..++++++++
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~---------------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~ 314 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN---------------VRIVTLYADALIRTGQNEKAIPLLQQSLATH 314 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 457888888888885 788888888877654 5677788888888888888888888888776
Q ss_pred -----------------------HHHHHHHHhhCCCCC
Q 036950 370 -----------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 -----------------------~~~~~~al~l~p~~~ 384 (469)
...|++++..+|++.
T Consensus 315 P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 315 PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 556777777788765
No 115
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.0031 Score=65.81 Aligned_cols=107 Identities=15% Similarity=0.151 Sum_probs=72.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCC--------------CCHHHH-----HHHHHHHHHhHhHHHHHHHHhhCHH
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYDSS--------------FSDEEK-----QQAKVLKITCNLNNAACKLKLKEYK 356 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~--------------~~~e~~-----~~~~~l~~~~~~N~a~~~~kl~~~~ 356 (469)
.|-++.....|+.|..+|+.||.+.+..-. ....+. -++++-...+.+-++..|.++|+.+
T Consensus 461 lGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d 540 (638)
T KOG1126|consen 461 LGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKD 540 (638)
T ss_pred cCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhh
Confidence 677777888888888888888887764310 000111 1233344556667789999999999
Q ss_pred HHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036950 357 QAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNK 407 (469)
Q Consensus 357 ~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (469)
+|+..+++|+-+| +..|+...++-|++. .+.-.+.++-++++....
T Consensus 541 ~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es-----~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 541 KALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQES-----SVFALLGKIYKRLGNTDL 609 (638)
T ss_pred HHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchH-----HHHHHHHHHHHHHccchH
Confidence 9999999999999 444555566667776 666666666655554443
No 116
>PRK12370 invasion protein regulator; Provisional
Probab=96.73 E-value=0.014 Score=62.43 Aligned_cols=68 Identities=16% Similarity=0.078 Sum_probs=61.0
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc------------
Q 036950 302 KAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD------------ 369 (469)
Q Consensus 302 k~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d------------ 369 (469)
..+++.+|+..|.+|+.+.|.+ ..+|.++|.++..+|+|++|+..+++||+++
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~---------------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 380 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNN---------------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW 380 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456899999999999987765 6678899999999999999999999999998
Q ss_pred -----------HHHHHHHHhhCCCCC
Q 036950 370 -----------KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 -----------~~~~~~al~l~p~~~ 384 (469)
...++++++++|.+.
T Consensus 381 ~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 381 NLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 678999999999987
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.66 E-value=0.016 Score=63.26 Aligned_cols=97 Identities=8% Similarity=-0.081 Sum_probs=74.8
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+....+.++.+++.+++++|+..+++++...++. ...++++|.|+.++|+|++|+..+++++..+
T Consensus 120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~---------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 120 SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS---------------AREILLEAKSWDEIGQSEQADACFERLSRQH 184 (694)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 3445688999999999999999999999988766 6788999999999999999999999999754
Q ss_pred -----------------------HHHHHHHHhhCC-CCCCcchHHHHHHHHHHHHHHHHHH
Q 036950 370 -----------------------KLDIKKALEIDP-DNSLEAGWGVRMEYKLLKEKVREYN 406 (469)
Q Consensus 370 -----------------------~~~~~~al~l~p-~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (469)
...|++|++... ..+ ...+.+..+.+.....+
T Consensus 185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 240 (694)
T PRK15179 185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR-----KLTRRLVDLNADLAALR 240 (694)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH-----HHHHHHHHHHHHHHHHH
Confidence 556888877743 333 44455555555444433
No 118
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.66 E-value=0.014 Score=65.09 Aligned_cols=80 Identities=28% Similarity=0.326 Sum_probs=63.3
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+..+...|..+++.|+|++|+..|.+++...+.. ...+.++|.+++..|+|++|+..++++++.+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 189 (899)
T TIGR02917 125 AELLALRGLAYLGLGQLELAQKSYEQALAIDPRS---------------LYAKLGLAQLALAENRFDEARALIDEVLTAD 189 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---------------hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4556788999999999999999999999876643 3356777888888888888888888887765
Q ss_pred -----------------------HHHHHHHHhhCCCCC
Q 036950 370 -----------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 -----------------------~~~~~~al~l~p~~~ 384 (469)
...|++++.++|++.
T Consensus 190 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~ 227 (899)
T TIGR02917 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNP 227 (899)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCH
Confidence 456777777788776
No 119
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.65 E-value=0.0025 Score=62.99 Aligned_cols=76 Identities=13% Similarity=0.197 Sum_probs=61.3
Q ss_pred HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950 285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK 364 (469)
Q Consensus 285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~ 364 (469)
+++.+...+-+.||.+|-.|+|+.|+..-+.-|.+....- -+.-...+|+|++.||.-+|+|+.|++++..
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG---------DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~ 260 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG---------DRAAERRAHSNLGNCHIFLGNFELAIEHYKL 260 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh---------hHHHHHHhhcccchhhhhhcccHhHHHHHHH
Confidence 4555666677899999999999999999998887654321 1223367899999999999999999999999
Q ss_pred HHhhc
Q 036950 365 VLELD 369 (469)
Q Consensus 365 al~~d 369 (469)
+|.+-
T Consensus 261 tl~LA 265 (639)
T KOG1130|consen 261 TLNLA 265 (639)
T ss_pred HHHHH
Confidence 88776
No 120
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.64 E-value=0.014 Score=51.77 Aligned_cols=83 Identities=18% Similarity=0.102 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhC----HHHHHHHHHHHHhhcHHHHHHHHhhC
Q 036950 305 KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE----YKQAEKLCSKVLELDKLDIKKALEID 380 (469)
Q Consensus 305 ~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~----~~~ai~~~~~al~~d~~~~~~al~l~ 380 (469)
-+++|+.+|++||.+.|.. ...+.|++.+|..++. ..+|..++++|. ..|++|...+
T Consensus 50 miedAisK~eeAL~I~P~~---------------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~----~~FqkAv~~~ 110 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNK---------------HDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT----EYFQKAVDED 110 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT----------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcCCch---------------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH----HHHHHHHhcC
Confidence 4778888888888877654 7788999999998874 456667777776 7999999999
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 036950 381 PDNSLEAGWGVRMEYKLLKEKVREYNKKDVQ 411 (469)
Q Consensus 381 p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~ 411 (469)
|+|. ..++-|+...+.=.-..+-.++
T Consensus 111 P~ne-----~Y~ksLe~~~kap~lh~e~~~~ 136 (186)
T PF06552_consen 111 PNNE-----LYRKSLEMAAKAPELHMEIHKQ 136 (186)
T ss_dssp TT-H-----HHHHHHHHHHTHHHHHHHHHHS
T ss_pred CCcH-----HHHHHHHHHHhhHHHHHHHHHH
Confidence 9999 8888888886654444444443
No 121
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.64 E-value=0.028 Score=50.63 Aligned_cols=78 Identities=21% Similarity=0.235 Sum_probs=64.2
Q ss_pred HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
++.-+-++|-.+.|.+.|..|+...++||.+-+.. ..++..||-+|-++..|++|+.++.++++.
T Consensus 133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty---------------~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY---------------EKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh---------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 35556789999999999999999999999987643 566678899999999999999999999999
Q ss_pred c--HHHHHHHH-hhCC
Q 036950 369 D--KLDIKKAL-EIDP 381 (469)
Q Consensus 369 d--~~~~~~al-~l~p 381 (469)
| .+..++++ .+.|
T Consensus 198 dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 198 DPSRREAREAIARLPP 213 (271)
T ss_pred CcchHHHHHHHHhcCH
Confidence 9 44555543 4444
No 122
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.62 E-value=0.027 Score=57.11 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=46.5
Q ss_pred HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL 366 (469)
Q Consensus 287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al 366 (469)
-..|+.+.-.|.-+|-.|++..|-..+.++|.+.+... .+|.-||+.|+..++-.+-..++++|.
T Consensus 323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~---------------~lyI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN---------------SLYIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc---------------hHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 34577888899999999999999999999999877552 224444444444444444444444444
Q ss_pred hhc
Q 036950 367 ELD 369 (469)
Q Consensus 367 ~~d 369 (469)
.+|
T Consensus 388 ~ld 390 (606)
T KOG0547|consen 388 DLD 390 (606)
T ss_pred hcC
Confidence 444
No 123
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0078 Score=61.82 Aligned_cols=72 Identities=24% Similarity=0.169 Sum_probs=64.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--- 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--- 369 (469)
+-+.|-.+.|.++|.+|+..|++||...+.+ ...|+-+|.||..+|+++.|++++.+||.++
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~---------------~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKD---------------ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc---------------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 5589999999999999999999999988866 7789999999999999999999999999998
Q ss_pred ---HHHHHHHHhh
Q 036950 370 ---KLDIKKALEI 379 (469)
Q Consensus 370 ---~~~~~~al~l 379 (469)
.+-++.|++.
T Consensus 523 ~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 523 IFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHHh
Confidence 4556677665
No 124
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.54 E-value=0.0024 Score=40.62 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHH
Q 036950 312 RYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAE 359 (469)
Q Consensus 312 ~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai 359 (469)
+|++||++.|.+ ..+|+|+|.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n---------------~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNN---------------AEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCC---------------HHHHHHHHHHHHHCcCHHhhc
Confidence 489999998877 789999999999999999986
No 125
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.53 E-value=0.008 Score=45.87 Aligned_cols=62 Identities=29% Similarity=0.350 Sum_probs=53.4
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
.+...|..++..+++..|+..|++++...+.. ..++.+++.++..+++++.|...+.++++.
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDN---------------AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 35578999999999999999999999976654 257789999999999999999999888764
No 126
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.53 E-value=0.02 Score=63.70 Aligned_cols=87 Identities=9% Similarity=0.034 Sum_probs=73.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--- 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--- 369 (469)
+...|..+.+.|++.+|+..|++++...|.. ..++.+++.+++..+++.+|+..++++++.+
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~---------------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~ 116 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQN---------------DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDK 116 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5678899999999999999999999987755 4456799999999999999999999999876
Q ss_pred -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950 370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK 399 (469)
Q Consensus 370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~ 399 (469)
+..++++++++|++. .+...+..+.
T Consensus 117 ~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~-----~~~~~la~~l 160 (765)
T PRK10049 117 ANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQ-----QYPTEYVQAL 160 (765)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHH
Confidence 677999999999998 6666555443
No 127
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.53 E-value=0.0039 Score=40.15 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=24.5
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
+|+|+|.+|.++|+|++|+.+++++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999998854
No 128
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.47 E-value=0.1 Score=45.03 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=69.9
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-------CCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYD-------SSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK 364 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~-------~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~ 364 (469)
.+...|...-..++...++..|.+++.++... ..+.......+......+...++.++...|+|+.|+..|.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34456777788899999999999999988543 13445677788899999999999999999999999999988
Q ss_pred HHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950 365 VLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE 404 (469)
Q Consensus 365 al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~ 404 (469)
++ .++|-|. .+...+-++-.....
T Consensus 88 ~l-----------~~dP~~E-----~~~~~lm~~~~~~g~ 111 (146)
T PF03704_consen 88 AL-----------ALDPYDE-----EAYRLLMRALAAQGR 111 (146)
T ss_dssp HH-----------HHSTT-H-----HHHHHHHHHHHHTT-
T ss_pred HH-----------hcCCCCH-----HHHHHHHHHHHHCcC
Confidence 87 5666666 555555555444433
No 129
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.46 E-value=0.0047 Score=61.66 Aligned_cols=92 Identities=16% Similarity=0.193 Sum_probs=72.3
Q ss_pred hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh--
Q 036950 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL-- 368 (469)
Q Consensus 291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~-- 368 (469)
..+-++||-.|..|+|++|...|++||.-.. -+..+++|+++++-++|+.++|++++-+.-.+
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~nda---------------sc~ealfniglt~e~~~~ldeald~f~klh~il~ 555 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDA---------------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILL 555 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCch---------------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999997332 23667899999999999999999988764332
Q ss_pred c---------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950 369 D---------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV 402 (469)
Q Consensus 369 d---------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 402 (469)
+ ++.+-++..+-|++. ++...|..+..+.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp-----~ilskl~dlydqe 605 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDP-----AILSKLADLYDQE 605 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCH-----HHHHHHHHHhhcc
Confidence 2 566777778889998 8887777775443
No 130
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.43 E-value=0.022 Score=50.92 Aligned_cols=80 Identities=19% Similarity=0.075 Sum_probs=62.4
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+..+...|..+++.|+|+.|+..|.+++...+.. ...+.+++.||..++++..+..++..++..-
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~ 136 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQ---------------PSALNNIAVIYHKRGEKAEEAGDQDEAEALF 136 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---------------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHH
Confidence 3456788999999999999999999999976643 5567888999988877555555555555433
Q ss_pred ---HHHHHHHHhhCCCCC
Q 036950 370 ---KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 ---~~~~~~al~l~p~~~ 384 (469)
.+.+++++.++|+|.
T Consensus 137 ~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 137 DKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHHHhhCchhH
Confidence 578888999999876
No 131
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.41 E-value=0.027 Score=62.86 Aligned_cols=87 Identities=21% Similarity=0.148 Sum_probs=59.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--- 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--- 369 (469)
+...|..+.+.|++.+|+..|.+++...+.+ ..+++++|.+|.++|++++|+..++++++.+
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 803 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPND---------------AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN 803 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 4456777888888888888888888765543 4466777777777777777777777777665
Q ss_pred -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHH
Q 036950 370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLK 399 (469)
Q Consensus 370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~ 399 (469)
+..+++++.+.|++. .+...+..+.
T Consensus 804 ~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~ 847 (899)
T TIGR02917 804 AVVLNNLAWLYLELKDPRALEYAEKALKLAPNIP-----AILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCc-----HHHHHHHHHH
Confidence 345666666777766 5554444443
No 132
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.04 Score=55.54 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYD 323 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~ 323 (469)
-.|-++...++-..|+..|++|+++.|.+
T Consensus 369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~D 397 (559)
T KOG1155|consen 369 LMGHEYVEMKNTHAAIESYRRAVDINPRD 397 (559)
T ss_pred HhhHHHHHhcccHHHHHHHHHHHhcCchh
Confidence 58999999999999999999999999876
No 133
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.40 E-value=0.011 Score=64.22 Aligned_cols=100 Identities=22% Similarity=0.269 Sum_probs=69.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCC--------------CCCCH--HHHHHHHHHHH---HhHhHHHHHHHHhhCHHHHHH
Q 036950 300 LFKAGKYERASKRYEQAVNYIGYD--------------SSFSD--EEKQQAKVLKI---TCNLNNAACKLKLKEYKQAEK 360 (469)
Q Consensus 300 ~fk~~~~~~A~~~Y~~al~~~~~~--------------~~~~~--e~~~~~~~l~~---~~~~N~a~~~~kl~~~~~ai~ 360 (469)
.-.++.+.+|+.+|.++|+..|.. ..+.+ +-...+++-.. .+|.|+|.||+-+|+|..||+
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHH
Confidence 445567888888888888877543 01111 12223333333 689999999999999999999
Q ss_pred HHHHHHhhc-------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950 361 LCSKVLELD-------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE 404 (469)
Q Consensus 361 ~~~~al~~d-------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~ 404 (469)
.++.++..- ++.+.+|+.+.|.|. .+.-.+..+.+++..
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~-----~v~FN~a~v~kkla~ 765 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNT-----SVKFNLALVLKKLAE 765 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccc-----hHHhHHHHHHHHHHH
Confidence 999999764 567888889999999 666555555444433
No 134
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.048 Score=54.23 Aligned_cols=79 Identities=20% Similarity=0.188 Sum_probs=65.1
Q ss_pred hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-
Q 036950 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD- 369 (469)
Q Consensus 291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d- 369 (469)
..+.-+||.+.+.++.++|+-.|+.|..+-|.+ ..+|--+-.||+..+.+.+|...++.+++.-
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~r---------------L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~ 399 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYR---------------LEIYRGLFHSYLAQKRFKEANALANWTIRLFQ 399 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhh---------------HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence 344568999999999999999999999876654 7789999999999999999999999988764
Q ss_pred ------------------------HHHHHHHHhhCCCCC
Q 036950 370 ------------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 ------------------------~~~~~~al~l~p~~~ 384 (469)
+.-++++|+++|..-
T Consensus 400 ~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~ 438 (564)
T KOG1174|consen 400 NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT 438 (564)
T ss_pred cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence 445667777777765
No 135
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.38 E-value=0.054 Score=50.80 Aligned_cols=65 Identities=8% Similarity=0.060 Sum_probs=51.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHh--------hCHHHHHHHHHH
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL--------KEYKQAEKLCSK 364 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl--------~~~~~ai~~~~~ 364 (469)
+...|..+++.++|..|+..|.++++..+..+.. ..++.+++.|++++ +++..|+..+++
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~ 140 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQE 140 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999988865432 22567778888776 778888888877
Q ss_pred HHhhc
Q 036950 365 VLELD 369 (469)
Q Consensus 365 al~~d 369 (469)
++..+
T Consensus 141 ~~~~~ 145 (235)
T TIGR03302 141 LIRRY 145 (235)
T ss_pred HHHHC
Confidence 77554
No 136
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.025 Score=58.95 Aligned_cols=68 Identities=22% Similarity=0.218 Sum_probs=59.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+-+.+..+|+.++|..|++.|...+++++.+. .....+++.-|++.||+++.+.+.|+++..+|=+.|
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~---------~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN---------YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchh---------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 45789999999999999999999999988652 122337788899999999999999999999999988
No 137
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.36 E-value=0.059 Score=58.36 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=30.8
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD 323 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~ 323 (469)
+..+.-++|.+|..|++.+|.+...++|+..+..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~ 172 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRN 172 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc
Confidence 6678889999999999999999999999987754
No 138
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.30 E-value=0.011 Score=45.01 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=28.1
Q ss_pred HHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 337 LKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 337 l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
....+|+|+|.+|..+|+|++|+.++++||++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35778999999999999999999999999965
No 139
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.27 E-value=0.035 Score=51.16 Aligned_cols=64 Identities=28% Similarity=0.354 Sum_probs=53.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+.+-|--++..|+|++|...|.+|+.- |.... ....+-|++.|.+++|+++.|.+++.++|++|
T Consensus 106 LNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~------------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 106 LNNYGAFLCAQGRPEEAMQQFERALAD-PAYGE------------PSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred hhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCC------------cchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 447788889999999999999999862 32221 14578999999999999999999999999999
No 140
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.25 E-value=0.00039 Score=67.00 Aligned_cols=98 Identities=10% Similarity=-0.074 Sum_probs=82.5
Q ss_pred HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950 285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK 364 (469)
Q Consensus 285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~ 364 (469)
+-..++..+|..|+.+|+.+.|..|+.+|.+.+...... ..+..| +..|+|.-+|+.++.+|.+
T Consensus 229 Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~---------------~~L~~~-~~~~~KI~~~~~~~~~~~~ 292 (536)
T KOG4648|consen 229 QGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDS---------------NQLRIS-DEDIDKIFNSNCGIIEEVK 292 (536)
T ss_pred cchhhhccccCcchhhhhhhccccceeEeeccccccCcc---------------ccCccc-HHHHHHHhhcchhHHHHHH
Confidence 345567778999999999999999999999998765543 345566 9999999999999999999
Q ss_pred HHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950 365 VLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVR 403 (469)
Q Consensus 365 al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~ 403 (469)
++.++ ..+++.++.+.|.++ ....++.++..++-
T Consensus 293 ~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~-----~~~~~~sr~~~~ii 349 (536)
T KOG4648|consen 293 KTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVE-----TPKETETRKDTKIV 349 (536)
T ss_pred hcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccc-----cchhhhhhhccccc
Confidence 99998 568999999999999 88888877766553
No 141
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.053 Score=59.21 Aligned_cols=91 Identities=20% Similarity=0.166 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----- 369 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----- 369 (469)
-.+|-+|-+|+|..+...+.-|+..-. ...+.+-.|+++|.||..+|+|++|..++.++++.+
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t~------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~ 342 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNTE------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV 342 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhh------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc
Confidence 478889999999999999999987542 244567779999999999999999999999999988
Q ss_pred -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950 370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV 402 (469)
Q Consensus 370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 402 (469)
..+|+++++..|+|. +..+.|..+-...
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~-----etm~iLG~Lya~~ 389 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNY-----ETMKILGCLYAHS 389 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhCcchH-----HHHHHHHhHHHhh
Confidence 678999999999999 7777777776655
No 142
>PLN02789 farnesyltranstransferase
Probab=96.23 E-value=0.078 Score=52.49 Aligned_cols=86 Identities=15% Similarity=-0.012 Sum_probs=59.5
Q ss_pred cHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCH--HHHHHHHHHHHhhc
Q 036950 293 KKEEGNVLFKAG-KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEY--KQAEKLCSKVLELD 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~-~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~--~~ai~~~~~al~~d 369 (469)
+..+|..+.+.+ ++.+|+..+.+++...+.. ..++.+|+.++.+++++ .+++..|+++|++|
T Consensus 74 W~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn---------------yqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d 138 (320)
T PLN02789 74 WHFRRLCLEALDADLEEELDFAEDVAEDNPKN---------------YQIWHHRRWLAEKLGPDAANKELEFTRKILSLD 138 (320)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc---------------hHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC
Confidence 345677777777 6899999999999876654 44567777776666653 56677777777766
Q ss_pred -----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 036950 370 -----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLL 398 (469)
Q Consensus 370 -----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 398 (469)
++.+.+++++||+|. .+...+..+
T Consensus 139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~-----sAW~~R~~v 185 (320)
T PLN02789 139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNN-----SAWNQRYFV 185 (320)
T ss_pred cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCch-----hHHHHHHHH
Confidence 556666777788887 555544444
No 143
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.15 E-value=0.021 Score=61.72 Aligned_cols=68 Identities=26% Similarity=0.360 Sum_probs=57.9
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
+.+.-+++.+..+...|+|..|++.|..++..-.+. ...+|.++|.||+.++.|+.|+.++.+||.
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~--------------~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~ 477 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ--------------NAFVWYKLARCYMELGEYEEAIEFYEKVLI 477 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc--------------chhhhHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 345566788899999999999999999998754432 166899999999999999999999999998
Q ss_pred hc
Q 036950 368 LD 369 (469)
Q Consensus 368 ~d 369 (469)
++
T Consensus 478 ~~ 479 (895)
T KOG2076|consen 478 LA 479 (895)
T ss_pred cC
Confidence 77
No 144
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=96.13 E-value=0.037 Score=61.64 Aligned_cols=61 Identities=13% Similarity=-0.043 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
...|..+...|++++|+..+++++...|.. ..+++++|.++..+|++++|+..++++++++
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n---------------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGN---------------QGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 467888889999999999999999988765 5688999999999999999999999988765
No 145
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=96.13 E-value=0.026 Score=54.66 Aligned_cols=97 Identities=22% Similarity=0.230 Sum_probs=60.3
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC-----------CCH-HH-HHHHHHHH------HHhHhHHHHHHHHh
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSS-----------FSD-EE-KQQAKVLK------ITCNLNNAACKLKL 352 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~-----------~~~-e~-~~~~~~l~------~~~~~N~a~~~~kl 352 (469)
-+...|+.+.+.|++++|++.|++|++..|.++. ..+ ++ ...+..+. ..++..+|.||+.+
T Consensus 148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 3456889999999999999999999999987522 111 11 11122221 23567788888888
Q ss_pred hCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950 353 KEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE 404 (469)
Q Consensus 353 ~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~ 404 (469)
|++++|+..+++++ +.+|+|. .+...+..+-.....
T Consensus 228 g~~~~Al~~~~~~~-----------~~~p~d~-----~~~~~~a~~l~~~g~ 263 (280)
T PF13429_consen 228 GRYEEALEYLEKAL-----------KLNPDDP-----LWLLAYADALEQAGR 263 (280)
T ss_dssp T-HHHHHHHHHHHH-----------HHSTT-H-----HHHHHHHHHHT----
T ss_pred cccccccccccccc-----------ccccccc-----ccccccccccccccc
Confidence 88888877666655 6777777 666555555444433
No 146
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.04 E-value=0.087 Score=55.10 Aligned_cols=75 Identities=27% Similarity=0.264 Sum_probs=63.5
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
+.+..+.+.+..+-.+++|++|...|+++++++.+.+... +......+.|+|-+|+++|+|++|.+.+.+||.
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~-------~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED-------NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc-------chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4566777889999999999999999999999987443322 335578899999999999999999999999998
Q ss_pred hc
Q 036950 368 LD 369 (469)
Q Consensus 368 ~d 369 (469)
..
T Consensus 396 ~~ 397 (508)
T KOG1840|consen 396 IL 397 (508)
T ss_pred HH
Confidence 76
No 147
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.00 E-value=0.014 Score=36.50 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=27.5
Q ss_pred hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
+.+...|..+++.|+|++|+..|++++.+.|.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45678999999999999999999999998764
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.98 E-value=0.034 Score=49.41 Aligned_cols=82 Identities=17% Similarity=0.055 Sum_probs=64.6
Q ss_pred hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcH
Q 036950 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDK 370 (469)
Q Consensus 291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~ 370 (469)
..+.+.|..+...|++++|+..|.+|+...+.. .........++.|++..+.++|+++.|+.++.+++
T Consensus 73 ~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~--------~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~---- 140 (168)
T CHL00033 73 YILYNIGLIHTSNGEHTKALEYYFQALERNPFL--------PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA---- 140 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc--------HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH----
Confidence 356788999999999999999999999875432 11122335556666666669999999999999998
Q ss_pred HHHHHHHhhCCCCC
Q 036950 371 LDIKKALEIDPDNS 384 (469)
Q Consensus 371 ~~~~~al~l~p~~~ 384 (469)
..+++++..+|++.
T Consensus 141 ~~~~~a~~~~p~~~ 154 (168)
T CHL00033 141 EYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHhCcccH
Confidence 58999999999876
No 149
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.97 E-value=0.012 Score=36.93 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=25.9
Q ss_pred HhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 340 TCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 340 ~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
.+|.++|.||.++|++++|+.++++++++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999988888865
No 150
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.97 E-value=0.052 Score=60.38 Aligned_cols=90 Identities=8% Similarity=0.008 Sum_probs=73.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--- 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--- 369 (469)
+...|..+...|+|++|+..|++++...|.+ ..++.-++.+|..++++++|+..+.+++..+
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n---------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~ 169 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKDPTN---------------PDLISGMIMTQADAGRGGVVLKQATELAERDPTV 169 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch
Confidence 3445778888899999999999999988765 3344566999999999999999999999888
Q ss_pred -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950 370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV 402 (469)
Q Consensus 370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 402 (469)
++.++++++++|++. ++..++..+-...
T Consensus 170 ~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~-----e~~~~~~~~l~~~ 216 (822)
T PRK14574 170 QNYMTLSYLNRATDRNYDALQASSEAVRLAPTSE-----EVLKNHLEILQRN 216 (822)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHc
Confidence 567888999999998 7766666554433
No 151
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.90 E-value=0.017 Score=38.94 Aligned_cols=41 Identities=24% Similarity=0.296 Sum_probs=33.9
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKL 397 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~ 397 (469)
++.++|.+|..+|++++|+..++++| +.+|+|. .++..+.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l-----------~~~P~~~-----~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL-----------ALDPDDP-----EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-----------HHCcCCH-----HHHHHhhh
Confidence 57889999999999999988776665 7899998 77776654
No 152
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.85 E-value=0.059 Score=59.83 Aligned_cols=62 Identities=10% Similarity=-0.063 Sum_probs=55.3
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+...|..|=+.|++++|...|.++|++.+.+ +.+++|+|-.|... +.++|+.++.+|++..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---------------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDN---------------PEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCccc---------------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 56688999999999999999999999988655 67889999999999 9999999999999765
No 153
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.83 E-value=0.018 Score=36.23 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=27.9
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
|..+...|..++..++|.+|+..|++||++.|.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 345678999999999999999999999998763
No 154
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.81 E-value=0.32 Score=40.17 Aligned_cols=71 Identities=13% Similarity=0.181 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
...|...++.|-|.+|...|.+|+..-...|....-+. ...-.-||.-++.++.+||+|++|+..++.+|.
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh---~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDH---DGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---H---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhccc---ccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45778888999999999999999998766554222222 334466888999999999999999999999995
No 155
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.79 E-value=0.043 Score=52.73 Aligned_cols=79 Identities=14% Similarity=0.162 Sum_probs=63.3
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHH
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKL 371 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~ 371 (469)
.+.-.|..+|..|+|..|+..|.+++...+..+.. ..++.+++.||..+|+++.|+..+++++
T Consensus 182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~------------~dAl~klg~~~~~~g~~~~A~~~~~~vi----- 244 (263)
T PRK10803 182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA------------ADAMFKVGVIMQDKGDTAKAKAVYQQVI----- 244 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH-----
Confidence 44678999999999999999999999988865432 4567889999999999999988777766
Q ss_pred HHHHHHhhCCCCCCcchHHHHHHHHHH
Q 036950 372 DIKKALEIDPDNSLEAGWGVRMEYKLL 398 (469)
Q Consensus 372 ~~~~al~l~p~~~~~~~~~~~~~l~~~ 398 (469)
+..|++. .+.....++
T Consensus 245 ------~~yP~s~-----~a~~A~~rL 260 (263)
T PRK10803 245 ------KKYPGTD-----GAKQAQKRL 260 (263)
T ss_pred ------HHCcCCH-----HHHHHHHHH
Confidence 7788877 555444443
No 156
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.78 E-value=0.092 Score=52.38 Aligned_cols=76 Identities=12% Similarity=0.251 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSF---SDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~---~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
...+..+|++++|..|+-.|.-||.++....-. .......+..+.+-+..-+..||+++++.+-|+.+.-+.|.++
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 357889999999999999999999999754211 1233445566667778889999999999999999999999877
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.59 E-value=0.024 Score=41.52 Aligned_cols=59 Identities=17% Similarity=0.233 Sum_probs=40.6
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036950 343 LNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFA 418 (469)
Q Consensus 343 ~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~ 418 (469)
+++|..+++.|+|++|+..+++++ +.+|++. .+...+..+.....+..+.. ..|..+..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l-----------~~~P~~~-----~a~~~lg~~~~~~g~~~~A~-~~~~~a~~ 59 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQAL-----------KQDPDNP-----EAWYLLGRILYQQGRYDEAL-AYYERALE 59 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHH-----------CCSTTHH-----HHHHHHHHHHHHTT-HHHHH-HHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHH-----------HHCCCCH-----HHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Confidence 367999999999999999888777 5566666 66666666666555555544 44555443
No 158
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.57 E-value=0.023 Score=37.32 Aligned_cols=30 Identities=23% Similarity=0.196 Sum_probs=26.4
Q ss_pred HHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 339 ITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
+.+++|+|.+|..+|+|++|+..+.+++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 467899999999999999999999999864
No 159
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.56 E-value=0.033 Score=57.51 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---------------
Q 036950 305 KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--------------- 369 (469)
Q Consensus 305 ~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--------------- 369 (469)
.+..-.+.|-.|....+...+ ..+++=|+..|.-.++|++|+.+++.||..+
T Consensus 409 ~l~~i~~~fLeaa~~~~~~~D-------------pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA 475 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLPTKID-------------PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA 475 (579)
T ss_pred HHHHHHHHHHHHHHhCCCCCC-------------hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc
Confidence 344445566666666553111 2345556666777788888888888888877
Q ss_pred --------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 036950 370 --------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDV 410 (469)
Q Consensus 370 --------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~ 410 (469)
+..|.+||+|.|+.- .++-.|...-..+..+++.-+
T Consensus 476 N~~~s~EAIsAY~rALqLqP~yV-----R~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 476 NGNRSEEAISAYNRALQLQPGYV-----RVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred CCcccHHHHHHHHHHHhcCCCee-----eeehhhhhhhhhhhhHHHHHH
Confidence 677888888888877 666666655555555554443
No 160
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.48 E-value=0.14 Score=52.14 Aligned_cols=83 Identities=19% Similarity=0.151 Sum_probs=65.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHH
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKK 375 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~ 375 (469)
.|.-+++.+++.+|++.+++++...|+. ..+..|+|.+|+++|++.+|+...+.
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~---------------~~l~~~~a~all~~g~~~eai~~L~~----------- 399 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNS---------------PLLQLNLAQALLKGGKPQEAIRILNR----------- 399 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCc---------------cHHHHHHHHHHHhcCChHHHHHHHHH-----------
Confidence 5667778899999999999999988765 55788999999999999988775554
Q ss_pred HHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950 376 ALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD 409 (469)
Q Consensus 376 al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e 409 (469)
.+.-+|+|. ..+..|.+....+....+..
T Consensus 400 ~~~~~p~dp-----~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 400 YLFNDPEDP-----NGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HhhcCCCCc-----hHHHHHHHHHHHhCchHHHH
Confidence 447788888 88888888777665554443
No 161
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=95.41 E-value=0.1 Score=45.19 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=49.9
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK 364 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~ 364 (469)
.....|+.+|..|+|++|+..|..++...+. ..+...+.+++|.|++.+++|++|+..++.
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d------------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPD------------PELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3456889999999999999999999984421 234566788999999999999999988765
No 162
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.40 E-value=0.024 Score=54.10 Aligned_cols=64 Identities=28% Similarity=0.439 Sum_probs=54.7
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
|..+.+.|--+||.|+|+.|+.+|+.|+..-.+. ..+-+|+|+||+..++|..|+++-++.++-
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq---------------pllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ---------------PLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCC---------------chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4455678889999999999999999999875544 345689999999999999999999998864
No 163
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.37 E-value=0.11 Score=57.86 Aligned_cols=124 Identities=14% Similarity=0.038 Sum_probs=75.5
Q ss_pred hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC-------------CHHHHHHHHH------HHHHhHhHHHHHHHH
Q 036950 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSF-------------SDEEKQQAKV------LKITCNLNNAACKLK 351 (469)
Q Consensus 291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~-------------~~e~~~~~~~------l~~~~~~N~a~~~~k 351 (469)
....+.+-..|+.|+|..|+..|.++++..+..+.. .++-...++. .....+..+|.+|..
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 355788899999999999999999999988765311 0111111111 112234444668888
Q ss_pred hhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 036950 352 LKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKK 408 (469)
Q Consensus 352 l~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 408 (469)
+|+|++|+..++++++.+ ++.++++...+|.+. .. ..+..+........+
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~-----~~-l~layL~~~~~~~~~- 187 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ-----NY-MTLSYLNRATDRNYD- 187 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH-----HH-HHHHHHHHhcchHHH-
Confidence 888888888888888887 445555566666655 33 333333322222222
Q ss_pred HHHHHHHhhhhhh
Q 036950 409 DVQFYGNIFAKIN 421 (469)
Q Consensus 409 e~~~~~~mf~~~~ 421 (469)
.-..|++++....
T Consensus 188 AL~~~ekll~~~P 200 (822)
T PRK14574 188 ALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHHHHhCC
Confidence 5556777776643
No 164
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=95.35 E-value=0.27 Score=40.71 Aligned_cols=75 Identities=15% Similarity=0.021 Sum_probs=60.0
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL 366 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al 366 (469)
++-..|+..|+.+++-.|+-+|++|+.........++.+..+.-.+.+...-|+|.-+-.+|+-+-.+++..-|-
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlAS 77 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLAS 77 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHH
Confidence 445689999999999999999999999887654344445555566667777899999999999999998877654
No 165
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.25 E-value=0.031 Score=33.35 Aligned_cols=29 Identities=34% Similarity=0.403 Sum_probs=25.6
Q ss_pred HhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 340 TCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 340 ~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
.++.++|.||..+++|+.|+.++.+++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 36789999999999999999999888754
No 166
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.05 E-value=0.31 Score=44.70 Aligned_cols=87 Identities=20% Similarity=0.142 Sum_probs=72.1
Q ss_pred CCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHH
Q 036950 280 DMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAE 359 (469)
Q Consensus 280 ~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai 359 (469)
.|+.+|+ |.-+-++|+-+=.-|-+..|.--+++++.+.|.. ..+++-++.-+..-|+|+.|.
T Consensus 58 ~l~~eeR---A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m---------------~~vfNyLG~Yl~~a~~fdaa~ 119 (297)
T COG4785 58 ALTDEER---AQLLFERGVLYDSLGLRALARNDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAY 119 (297)
T ss_pred cCChHHH---HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc---------------HHHHHHHHHHHHhcccchHHH
Confidence 4555544 6667788888888888888999999999887754 567788899999999999999
Q ss_pred HHHHHHHhhc-----------------------HHHHHHHHhhCCCCC
Q 036950 360 KLCSKVLELD-----------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 360 ~~~~~al~~d-----------------------~~~~~~al~l~p~~~ 384 (469)
+.++.++++| .+||.+-..-||+|.
T Consensus 120 eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 120 EAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred HHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 9999999999 678888888899886
No 167
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.03 E-value=0.25 Score=46.92 Aligned_cols=64 Identities=14% Similarity=0.199 Sum_probs=53.8
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
++.+.+-.+++.|+|..|...|..-++-+|...-. ...++=|+.|++.+|+|++|...+..+++
T Consensus 143 ~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 143 KLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 37899999999999999999999999988876432 33556679999999999999888877774
No 168
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.96 E-value=0.24 Score=37.71 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=53.9
Q ss_pred HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
.+....++|-.+|...+.++|+..++++++-.... +.+-.++.-++.+|...|+|.+++.++..=++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~------------~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDR------------EDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCCh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667799999999999999999999999977643 12344556679999999999999998876543
No 169
>PRK15331 chaperone protein SicA; Provisional
Probab=94.94 E-value=0.16 Score=44.68 Aligned_cols=60 Identities=17% Similarity=0.187 Sum_probs=50.4
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
+.-.|-.+-..++|+.|+..|..|..+...++.. +...|.||+.+++...|..++..|++
T Consensus 74 ~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p---------------~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 74 TMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP---------------VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc---------------cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 3457777778899999999999999987766442 47789999999999999998888875
No 170
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.86 E-value=0.18 Score=40.24 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=49.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 299 VLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 299 ~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
...+.++|..|++...+..++......... ........+|+|.++..+|++++|+..+++|+++-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 356789999999999999987653321110 22345568999999999999999999999999764
No 171
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=94.74 E-value=0.076 Score=53.88 Aligned_cols=62 Identities=18% Similarity=0.188 Sum_probs=53.7
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL 366 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al 366 (469)
+.-+..++..+.++++|+.|+...++|+.+.|.. -.+|..||.||.++|+|+.|+...+.+=
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~---------------f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPSE---------------FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh---------------HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 3345568999999999999999999999998865 6689999999999999999998777554
No 172
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.62 E-value=0.21 Score=41.88 Aligned_cols=64 Identities=20% Similarity=0.049 Sum_probs=52.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
+.+.+..+-..|+..+|+..|.+|+..-.. ......++.++|.+|..+|++++|+...++++.-
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~------------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLS------------GADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788888999999999999999984221 1223557889999999999999999999988865
No 173
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=0.94 Score=42.09 Aligned_cols=115 Identities=23% Similarity=0.368 Sum_probs=76.6
Q ss_pred HHHHhhhcHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHH
Q 036950 286 KIEAAGKKKEEGNVLFKA--GKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCS 363 (469)
Q Consensus 286 ~~~~a~~~k~~Gn~~fk~--~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~ 363 (469)
++..|.+.+-.--++|.. .++.+||.+|+.|-+++... +......+|++-.|.--..+++|.+||..++
T Consensus 108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iye 178 (288)
T KOG1586|consen 108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYE 178 (288)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444333444433 58999999999999988753 2233445666666777777899999999999
Q ss_pred HHHhhc------------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036950 364 KVLELD------------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFY 413 (469)
Q Consensus 364 ~al~~d------------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~ 413 (469)
++.... ...+++-.+++|.-. + .++.+-++..+..-++..-..|
T Consensus 179 qva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~-----d-sREckflk~L~~aieE~d~e~f 252 (288)
T KOG1586|consen 179 QVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFT-----D-SRECKFLKDLLDAIEEQDIEKF 252 (288)
T ss_pred HHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccc-----c-cHHHHHHHHHHHHHhhhhHHHH
Confidence 888654 455777778899876 3 3566666666666666555444
Q ss_pred HH
Q 036950 414 GN 415 (469)
Q Consensus 414 ~~ 415 (469)
..
T Consensus 253 te 254 (288)
T KOG1586|consen 253 TE 254 (288)
T ss_pred HH
Confidence 43
No 174
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.59 E-value=0.063 Score=34.39 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=23.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYI 320 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~ 320 (469)
+...|+.+++.|+|++|+..|+++|.+-
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4578999999999999999999988654
No 175
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.41 E-value=0.16 Score=53.99 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHH
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIK 374 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~ 374 (469)
-.|+-.+.+++|.+|.++++.++.+.+ +....|++++.|++++++++.|.+++..++
T Consensus 490 ~~~~~~~~~~~fs~~~~hle~sl~~np---------------lq~~~wf~~G~~ALqlek~q~av~aF~rcv-------- 546 (777)
T KOG1128|consen 490 SLALLILSNKDFSEADKHLERSLEINP---------------LQLGTWFGLGCAALQLEKEQAAVKAFHRCV-------- 546 (777)
T ss_pred hhccccccchhHHHHHHHHHHHhhcCc---------------cchhHHHhccHHHHHHhhhHHHHHHHHHHh--------
Confidence 344455667899999999999988644 447789999999999999999987666655
Q ss_pred HHHhhCCCCCCcchHHHHHHHHHHHHHHH
Q 036950 375 KALEIDPDNSLEAGWGVRMEYKLLKEKVR 403 (469)
Q Consensus 375 ~al~l~p~~~~~~~~~~~~~l~~~~~~~~ 403 (469)
.++|+|. ++...+....-++.
T Consensus 547 ---tL~Pd~~-----eaWnNls~ayi~~~ 567 (777)
T KOG1128|consen 547 ---TLEPDNA-----EAWNNLSTAYIRLK 567 (777)
T ss_pred ---hcCCCch-----hhhhhhhHHHHHHh
Confidence 6677776 55555555544443
No 176
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=94.37 E-value=0.54 Score=45.66 Aligned_cols=38 Identities=24% Similarity=0.306 Sum_probs=28.3
Q ss_pred ccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036950 278 SWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVN 318 (469)
Q Consensus 278 ~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~ 318 (469)
..+++.++| ...+-+.|.+|.+.|-|++|-..|...++
T Consensus 98 spdlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~d 135 (389)
T COG2956 98 SPDLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVD 135 (389)
T ss_pred CCCCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhc
Confidence 345566665 34556789999999999999998877665
No 177
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.26 E-value=0.059 Score=33.26 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=24.1
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
+++++|.||.++|++++|+..++++++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 468999999999999999998888774
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.99 E-value=1 Score=43.70 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=55.7
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
+.+..+...||.+-..++|.+|...|.+|..+...... ......+|.+.+.||.+. ++.+|+.++++|++
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~---------~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~ 102 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD---------KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIE 102 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHH
Confidence 45666677888888899999999999999988753211 223366788888888777 99999999999998
Q ss_pred hc
Q 036950 368 LD 369 (469)
Q Consensus 368 ~d 369 (469)
+-
T Consensus 103 ~y 104 (282)
T PF14938_consen 103 IY 104 (282)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.94 E-value=0.53 Score=39.40 Aligned_cols=76 Identities=18% Similarity=0.149 Sum_probs=62.2
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHH
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKL 371 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~ 371 (469)
.+...|..+...|++++|+...++++.-.+.+. +...+...+|+|+..+|++++|+..+-.+|.-...
T Consensus 40 a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~------------~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~ 107 (120)
T PF12688_consen 40 ALIQLASTLRNLGRYDEALALLEEALEEFPDDE------------LNAALRVFLALALYNLGRPKEALEWLLEALAETLP 107 (120)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 455789999999999999999999998766532 12456677899999999999999999999876666
Q ss_pred HHHHHHhh
Q 036950 372 DIKKALEI 379 (469)
Q Consensus 372 ~~~~al~l 379 (469)
.|++++..
T Consensus 108 ~y~ra~~~ 115 (120)
T PF12688_consen 108 RYRRAIRF 115 (120)
T ss_pred HHHHHHHH
Confidence 77777654
No 180
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.87 E-value=1.3 Score=40.63 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=45.4
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh-----------CHHHHHHH
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK-----------EYKQAEKL 361 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~-----------~~~~ai~~ 361 (469)
....|..+|+.++|..|+..|++-++..|..+.. .-++.-+|.|++++. ...+|+..
T Consensus 45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~ 112 (203)
T PF13525_consen 45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEE 112 (203)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHHHHH
Confidence 4578999999999999999999999998876432 234555666665543 34578888
Q ss_pred HHHHHhhc
Q 036950 362 CSKVLELD 369 (469)
Q Consensus 362 ~~~al~~d 369 (469)
++..++.-
T Consensus 113 ~~~li~~y 120 (203)
T PF13525_consen 113 FEELIKRY 120 (203)
T ss_dssp HHHHHHH-
T ss_pred HHHHHHHC
Confidence 88888665
No 181
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=93.69 E-value=1.4 Score=45.26 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=76.1
Q ss_pred HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950 286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV 365 (469)
Q Consensus 286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a 365 (469)
+.+.+.+.-.+|--.+..|+|..|.+...++.+..+.. ...+.-.|.++..+|+++.|..+..++
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~---------------~~~~llaA~aa~~~g~~~~A~~~l~~a 144 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEP---------------VLNLIKAAEAAQQRGDEARANQHLEEA 144 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCC---------------HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 56678888899999999999999999999998865432 334445577788888888888888887
Q ss_pred Hhhc------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950 366 LELD------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN 406 (469)
Q Consensus 366 l~~d------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (469)
.+.. ...++..++..|+|. .+...+..+....+...
T Consensus 145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~-----~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHK-----EVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHhhHH
Confidence 6653 456777788899998 77776666655554443
No 182
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.67 E-value=2.1 Score=40.35 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=70.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC-------------CCHHHHHHHHHHH------HHhHhHHHHHHHHhhCH
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSS-------------FSDEEKQQAKVLK------ITCNLNNAACKLKLKEY 355 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~-------------~~~e~~~~~~~l~------~~~~~N~a~~~~kl~~~ 355 (469)
-.|-.+=..|+|++|+..|...+.-.|.+.. .+-+-.+++++.. .-++--+|-.|+.+++|
T Consensus 91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f 170 (289)
T KOG3060|consen 91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF 170 (289)
T ss_pred HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH
Confidence 3556666778999999999988875543311 1112223333332 23567789999999999
Q ss_pred HHHHHHHHHHHhhc--------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 036950 356 KQAEKLCSKVLELD--------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKE 400 (469)
Q Consensus 356 ~~ai~~~~~al~~d--------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~ 400 (469)
.+|.-++++++=+. +..|.++++++|.|. .+.-.+-.+-.
T Consensus 171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~-----ral~GI~lc~~ 236 (289)
T KOG3060|consen 171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNL-----RALFGIYLCGS 236 (289)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhH-----HHHHHHHHHHH
Confidence 99999999999777 678999999999776 55544444433
No 183
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=93.60 E-value=1.1 Score=45.71 Aligned_cols=100 Identities=17% Similarity=0.194 Sum_probs=72.9
Q ss_pred HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950 286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV 365 (469)
Q Consensus 286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a 365 (469)
+.+++.+...+|-..+-.|+|..|.+.-.++-...+. -...|...|.+..++|+++.|..++.++
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~---------------p~l~~llaA~aA~~~g~~~~A~~~l~~A 144 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ---------------PVVNYLLAAEAAQQRGDEARANQHLERA 144 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc---------------hHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5667777788899999999999998666665543211 0222444466669999999999999999
Q ss_pred Hhhc------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950 366 LELD------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY 405 (469)
Q Consensus 366 l~~d------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~ 405 (469)
.+.+ .+.++++.+.+|+|. .+...+..+....++.
T Consensus 145 ~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~-----~al~ll~~~~~~~gdw 203 (398)
T PRK10747 145 AELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHP-----EVLRLAEQAYIRTGAW 203 (398)
T ss_pred HhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHHHhH
Confidence 9876 456788888999998 7777777666554433
No 184
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.58 E-value=1.1 Score=43.01 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 308 RASKRYEQAVNYIGYD------SSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 308 ~A~~~Y~~al~~~~~~------~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.-+..|.+.+..+..+ ..+.+++.+.+..++..++.-.|..|++.|.|.+|+..|+++|.+|
T Consensus 242 ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltld 309 (361)
T COG3947 242 LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD 309 (361)
T ss_pred cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC
Confidence 3455566666655322 3455678888999999998888999999999999999999998766
No 185
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.49 E-value=0.27 Score=48.15 Aligned_cols=56 Identities=29% Similarity=0.431 Sum_probs=44.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL 366 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al 366 (469)
.|-.+|..|+|++|+..|+-+..- .+++ ..+..|+|-|++-+|.|.+|.....+|-
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~--~~~~-------------~el~vnLAcc~FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK--DDAP-------------AELGVNLACCKFYLGQYIEAKSIAEKAP 118 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc--CCCC-------------cccchhHHHHHHHHHHHHHHHHHHhhCC
Confidence 467889999999999999988872 2222 4577899999999999999987766653
No 186
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.38 E-value=0.84 Score=39.24 Aligned_cols=88 Identities=17% Similarity=0.228 Sum_probs=62.1
Q ss_pred ccCCChHHHH--HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCH
Q 036950 278 SWDMNTQEKI--EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEY 355 (469)
Q Consensus 278 ~~~l~~~e~~--~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~ 355 (469)
.|-....+.+ .....+...+..+...|+|..|+..+.+++...|.+ ..+|.-+-.||..+|++
T Consensus 48 ~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~---------------E~~~~~lm~~~~~~g~~ 112 (146)
T PF03704_consen 48 EWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPYD---------------EEAYRLLMRALAAQGRR 112 (146)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT----------------HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHHCcCH
Confidence 4544444443 344455677888889999999999999999998876 56788889999999999
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHhhCCCCC
Q 036950 356 KQAEKLCSKVLELDKLDIKKALEIDPDNS 384 (469)
Q Consensus 356 ~~ai~~~~~al~~d~~~~~~al~l~p~~~ 384 (469)
..|+..+++.- ..+..-+.+.|+..
T Consensus 113 ~~A~~~Y~~~~----~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 113 AEALRVYERYR----RRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHH----HHHHHHHS----HH
T ss_pred HHHHHHHHHHH----HHHHHHhCcCcCHH
Confidence 99999999876 35555566667643
No 187
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.23 E-value=0.21 Score=33.48 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=28.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYD 323 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~ 323 (469)
+...|..+...|++++|++.|+++++..|.+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4567899999999999999999999998876
No 188
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=93.18 E-value=0.25 Score=49.33 Aligned_cols=60 Identities=17% Similarity=0.051 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
-..|..+...|+|.+|+..|++++...+.+ ..++.++|.+|..+|++++|+..+++++..
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~---------------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDD---------------AWAVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 356778899999999999999999987655 456778888888888888888888888865
No 189
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.13 E-value=0.25 Score=41.82 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=40.0
Q ss_pred HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950 339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE 404 (469)
Q Consensus 339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~ 404 (469)
..|.+-+|..|.++++|+.++.+|+..| +.+|+|. ++...-..+++++.+
T Consensus 71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll-----------~~e~~n~-----Qa~~Lk~~ied~itk 120 (149)
T KOG3364|consen 71 RECLYYLAVGHYRLKEYSKSLRYVDALL-----------ETEPNNR-----QALELKETIEDKITK 120 (149)
T ss_pred hhhhhhhHHHHHHHhhHHHHHHHHHHHH-----------hhCCCcH-----HHHHHHHHHHHHHhh
Confidence 3466778999999999999999988766 8899999 777776666665543
No 190
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=0.39 Score=48.06 Aligned_cols=100 Identities=15% Similarity=0.051 Sum_probs=65.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCC-----------CCHHHHHHH----------HHHHHHhHhHHHHHHHHhhCHH
Q 036950 298 NVLFKAGKYERASKRYEQAVNYIGYDSS-----------FSDEEKQQA----------KVLKITCNLNNAACKLKLKEYK 356 (469)
Q Consensus 298 n~~fk~~~~~~A~~~Y~~al~~~~~~~~-----------~~~e~~~~~----------~~l~~~~~~N~a~~~~kl~~~~ 356 (469)
-.|...|++.+|...-..+++.++.... .+.-..+.. ++-+..+-+-+|--++.-|.+.
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccc
Confidence 3455667777777776666666654311 111111111 2223334445677777788899
Q ss_pred HHHHHHHHHHhhc----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950 357 QAEKLCSKVLELD----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV 402 (469)
Q Consensus 357 ~ai~~~~~al~~d----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 402 (469)
++|...++.|... +..|..||.+||+|+ ...+.++++++..
T Consensus 456 D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~-----~sl~Gl~~lEK~~ 518 (564)
T KOG1174|consen 456 DIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK-----RTLRGLRLLEKSD 518 (564)
T ss_pred hHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch-----HHHHHHHHHHhcc
Confidence 9999998888765 678999999999999 8888888876554
No 191
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=92.88 E-value=0.6 Score=45.09 Aligned_cols=94 Identities=19% Similarity=0.206 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---- 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---- 369 (469)
......+++.++|.++.....++....... -...++.-+|.++.+.|++++|+.++++||+++
T Consensus 114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~ 180 (280)
T PF13429_consen 114 LSALQLYYRLGDYDEAEELLEKLEELPAAP-------------DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP 180 (280)
T ss_dssp ----H-HHHTT-HHHHHHHHHHHHH-T----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhccCCC-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 345556788899999998888877532110 115678889999999999999999999999887
Q ss_pred -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950 370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY 405 (469)
Q Consensus 370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~ 405 (469)
.+.++...+..|+|. .+...+..+...+...
T Consensus 181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 181 DARNALAWLLIDMGDYDEAREALKRLLKAAPDDP-----DLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC-----CHCHHHHHHHHHHT-H
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH-----HHHHHHHHHhcccccc
Confidence 223444455556666 5555555555555443
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=92.86 E-value=3.7 Score=43.50 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=63.1
Q ss_pred cHHHHHHHHhcCC---HHHHHHHHHHHHHHhcCCCC--------------CC---HHHHHHHHHH-H-----------HH
Q 036950 293 KKEEGNVLFKAGK---YERASKRYEQAVNYIGYDSS--------------FS---DEEKQQAKVL-K-----------IT 340 (469)
Q Consensus 293 ~k~~Gn~~fk~~~---~~~A~~~Y~~al~~~~~~~~--------------~~---~e~~~~~~~l-~-----------~~ 340 (469)
+.-+|..++...+ +..|+.+|++|+...|.+.. +. +......... . ..
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~ 421 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR 421 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH
Confidence 3456777776555 88999999999998876511 11 1111111111 1 13
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHhhc----------------------HHHHHHHHhhCCCCC
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLELD----------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d----------------------~~~~~~al~l~p~~~ 384 (469)
+|.=+|..++..|+|++|...+++|++++ .+.+++|+.++|.+.
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 34456777778899999999999999988 567888899999876
No 193
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.84 E-value=0.96 Score=43.83 Aligned_cols=87 Identities=22% Similarity=0.234 Sum_probs=68.2
Q ss_pred CCChHHHHHHhhhcHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHH
Q 036950 280 DMNTQEKIEAAGKKKEEGNVLFKAG-KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQA 358 (469)
Q Consensus 280 ~l~~~e~~~~a~~~k~~Gn~~fk~~-~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~a 358 (469)
.+++......+..+.+-|..+++++ +|..|+...++|.++++.... .+.......+++..++..+|.||+..+.++..
T Consensus 25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~ 103 (278)
T PF08631_consen 25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV 103 (278)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 4577788899999999999999999 999999999999999864211 11222345778899999999999999988655
Q ss_pred HHHHHHHHhh
Q 036950 359 EKLCSKVLEL 368 (469)
Q Consensus 359 i~~~~~al~~ 368 (469)
.. |..+++.
T Consensus 104 ~k-a~~~l~~ 112 (278)
T PF08631_consen 104 EK-ALNALRL 112 (278)
T ss_pred HH-HHHHHHH
Confidence 55 6665543
No 194
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=92.66 E-value=0.82 Score=46.60 Aligned_cols=99 Identities=24% Similarity=0.272 Sum_probs=65.0
Q ss_pred HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhC---HHHHHHHH
Q 036950 286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE---YKQAEKLC 362 (469)
Q Consensus 286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~---~~~ai~~~ 362 (469)
.+.........|-.+|+.|+|.+|+..|+..|..++-....+.++..+++++...|.--+-.+.+.+.+ -+....+-
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 334444455679999999999999999999999988766666688888888888876555555555443 12233344
Q ss_pred HHHHhhc-------------HHHHHHHHhhCCCCC
Q 036950 363 SKVLELD-------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 363 ~~al~~d-------------~~~~~~al~l~p~~~ 384 (469)
.+.|++- .-.|+.|+.+.=..+
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~K 314 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLK 314 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTT
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence 4555544 446777777765555
No 195
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=1.6 Score=45.72 Aligned_cols=114 Identities=20% Similarity=0.291 Sum_probs=69.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHH---------------H----HHHHHHHhHhHHHHHHHHhhCH
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQ---------------Q----AKVLKITCNLNNAACKLKLKEY 355 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~---------------~----~~~l~~~~~~N~a~~~~kl~~~ 355 (469)
-+|..+|+.++|++|+..|+..++--..+ .+++.. + ..+---.+++|.|-.++..|+|
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd---~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDD---QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccH
Confidence 47899999999999999999887632211 111110 0 0001233789999999999999
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH------HHHHHHHHHHhhhh
Q 036950 356 KQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY------NKKDVQFYGNIFAK 419 (469)
Q Consensus 356 ~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~------~~~e~~~~~~mf~~ 419 (469)
.+|++...+|+.+.. ++...-|-++. ++..++.-|+-.+.-. .+...++|..+.+.
T Consensus 192 ~qA~elL~kA~~~~~---e~l~~~d~~eE-----eie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 192 NQAIELLEKALRICR---EKLEDEDTNEE-----EIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHHHHHH---Hhhcccccchh-----hHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 999999999985432 22222233334 6666666665544322 23334455555544
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.53 E-value=1.6 Score=42.01 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=29.6
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD 323 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~ 323 (469)
++.+--.|..++..+++..|...|.+|+++.+..
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n 189 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDN 189 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC
Confidence 4455568999999999999999999999998765
No 197
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=1.6 Score=42.00 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---------------
Q 036950 305 KYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--------------- 369 (469)
Q Consensus 305 ~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--------------- 369 (469)
..+.-+..-+.-|...|.+ ..-+.=++.+|+.++++..|...+.+|+++.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d---------------~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~ 201 (287)
T COG4235 137 EMEALIARLETHLQQNPGD---------------AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALY 201 (287)
T ss_pred cHHHHHHHHHHHHHhCCCC---------------chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444455555556655555 3345668999999999999999999999998
Q ss_pred -----------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhch
Q 036950 370 -----------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKLE 424 (469)
Q Consensus 370 -----------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~~~ 424 (469)
..-|++++.+||+|- .+...|....-....+.+.- ..|..|++.....+
T Consensus 202 ~~a~~~~ta~a~~ll~~al~~D~~~i-----ral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~~~ 261 (287)
T COG4235 202 YQAGQQMTAKARALLRQALALDPANI-----RALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPADD 261 (287)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCccH-----HHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCCCC
Confidence 567999999999999 88888887766655555443 45888887765443
No 198
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=92.11 E-value=1.9 Score=32.68 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=47.4
Q ss_pred HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 036950 339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQ 411 (469)
Q Consensus 339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~ 411 (469)
+.-|..+|.-+=+.|+|.+|+.++++++ +.|.+++...|++. .....+.++.++..+-..
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aI----e~L~q~~~~~pD~~---------~k~~yr~ki~eY~~Rae~ 65 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAI----EVLSQIVKNYPDSP---------TRLIYEQMINEYKRRIEV 65 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HHHHHHHHhCCChH---------HHHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999999999 57999999999988 344456666666555543
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=91.65 E-value=4.8 Score=36.30 Aligned_cols=62 Identities=24% Similarity=0.365 Sum_probs=52.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIG-YDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~-~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
....||.+-..|+|.+|...|++++.-+- .+ ..+++.+|.+++.++++..|....++..+.+
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d---------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~ 154 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHD---------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN 154 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCC---------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence 34689999999999999999999997432 22 5677889999999999999999999999887
No 200
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=91.61 E-value=0.55 Score=46.80 Aligned_cols=65 Identities=15% Similarity=0.097 Sum_probs=53.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
+...|..++..|++++|+..|.+++...+..+ .....+|.++|.+|+.+|++++|+..+++++..
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~-----------~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS-----------MLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc-----------chhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 45678999999999999999999998765321 123557789999999999999999999998744
No 201
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=91.57 E-value=1.4 Score=41.44 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=63.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD--- 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d--- 369 (469)
+-.+|-.|-+.|++..|...|.+|+++.+.. ...++|++..|+=.|+++.|......+...-
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---------------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPNE---------------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccCC---------------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence 3478999999999999999999999999877 5578999999999999999999998887654
Q ss_pred ---HHHHHHHHhhCCCCC
Q 036950 370 ---KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 ---~~~~~~al~l~p~~~ 384 (469)
.+++-.+..+.++-.
T Consensus 202 ~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 202 SRVRQNLALVVGLQGDFR 219 (257)
T ss_pred hHHHHHHHHHHhhcCChH
Confidence 555555555555544
No 202
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.54 E-value=1 Score=34.18 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=42.8
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhHhHHHHHH
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDS-SFSDEEKQQAKVLKITCNLNNAACK 349 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~-~~~~e~~~~~~~l~~~~~~N~a~~~ 349 (469)
+.|..+-.++.++=+.|+|.+|+.+|++|+..+-..- ...++.....-.-++.=|.||+...
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~L 66 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVL 66 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888999999999999999999999885432 1222333444444466667777543
No 203
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.51 E-value=0.91 Score=47.92 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---- 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---- 369 (469)
-.+.-.+|..++|...++.-+..|+-.+.-.+ .. .=.++....+|+-++|...|..++..|
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge-------------sl--AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~ 75 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKKFPEHGE-------------SL--AMKGLTLNCLGKKEEAYELVRLGLRNDLKSH 75 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCccch-------------hH--HhccchhhcccchHHHHHHHHHHhccCcccc
Confidence 34556778888888888888888774432110 00 112555566888888888888888887
Q ss_pred -------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950 370 -------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN 406 (469)
Q Consensus 370 -------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (469)
+.+|+.|++++|+|. ++.+-|.-++..++.+.
T Consensus 76 vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~-----qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 76 VCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL-----QILRDLSLLQIQMRDYE 126 (700)
T ss_pred hhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHHHHHhhh
Confidence 678899999999999 99999988888777664
No 204
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.47 E-value=4.5 Score=36.19 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCH---HHHHHHHHHHHhhcHHHHHHHHhhCCC
Q 036950 306 YERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEY---KQAEKLCSKVLELDKLDIKKALEIDPD 382 (469)
Q Consensus 306 ~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~---~~ai~~~~~al~~d~~~~~~al~l~p~ 382 (469)
|+.|.+.|+......|.+ +..++|-+.+++.|.++ .++....+.|+ .-|+.||.++|+
T Consensus 7 FE~ark~aea~y~~nP~D---------------adnL~~WG~ALLELAqfk~g~es~~miedAi----sK~eeAL~I~P~ 67 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD---------------ADNLTNWGGALLELAQFKQGPESKKMIEDAI----SKFEEALKINPN 67 (186)
T ss_dssp HHHHHHHHHHHHHH-TT----------------HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH----HHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHHhCcHh---------------HHHHHHHHHHHHHHHhccCcchHHHHHHHHH----HHHHHHHhcCCc
Confidence 677888888888776655 66778999999998776 44666666665 688889999998
Q ss_pred CC
Q 036950 383 NS 384 (469)
Q Consensus 383 ~~ 384 (469)
..
T Consensus 68 ~h 69 (186)
T PF06552_consen 68 KH 69 (186)
T ss_dssp -H
T ss_pred hH
Confidence 87
No 205
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=91.45 E-value=0.85 Score=34.69 Aligned_cols=60 Identities=25% Similarity=0.185 Sum_probs=42.9
Q ss_pred HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHhHhHHH
Q 036950 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY-DSSFSDEEKQQAKVLKITCNLNNA 346 (469)
Q Consensus 287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~-~~~~~~e~~~~~~~l~~~~~~N~a 346 (469)
+..|..+-.+|.+.=+.|+|.+|+.+|..||+++-. .....++..++.-..+..=|++||
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RA 63 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 455677777888888999999999999999998854 222233455555555566667766
No 206
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=91.28 E-value=0.59 Score=45.63 Aligned_cols=51 Identities=31% Similarity=0.417 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 304 GKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 304 ~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+|++|...|++....++.. ..+++.+|.|++.+|+|++|.....+|++.+
T Consensus 181 e~~~~A~y~f~El~~~~~~t---------------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGST---------------PKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--S---------------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred hhHHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 36888888888865533221 4567789999999999999999999988777
No 207
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.18 E-value=1.3 Score=39.84 Aligned_cols=66 Identities=23% Similarity=0.226 Sum_probs=54.6
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
-..+.+.|+-+++.|+++.|++.|.++..++.. ....+.+++|+..+.+-+++|..+..+.++|-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345568999999999999999999999987653 234567788999999999999999988887653
No 208
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=91.17 E-value=1.2 Score=36.94 Aligned_cols=70 Identities=19% Similarity=0.213 Sum_probs=53.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
-..-.+.+.|+|.+++..-.+||.|++..-.+.+++ -.+-+.+-+|+|.++--+|+.++|+..++.+-++
T Consensus 60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde----GklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 60 GLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE----GKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc----chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 455678899999999999999999998654444333 3345667789999999999999999999988754
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.11 E-value=5 Score=37.99 Aligned_cols=49 Identities=6% Similarity=-0.009 Sum_probs=39.1
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK 353 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~ 353 (469)
....|..+|+.++|..|+..|++.++..|..+.. .-++.-+|.|+..++
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~------------~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVLYMRGLTNMALD 120 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch------------HHHHHHHHHhhhhcc
Confidence 4588999999999999999999999999887554 335566677765554
No 210
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=91.11 E-value=0.75 Score=34.98 Aligned_cols=36 Identities=19% Similarity=0.050 Sum_probs=31.5
Q ss_pred HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
++.|..+-.+|...=..|+|++|+.+|..||.++-.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 566778888889999999999999999999998853
No 211
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=91.11 E-value=0.93 Score=34.53 Aligned_cols=35 Identities=20% Similarity=0.194 Sum_probs=29.7
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
..|..+-.++.++=+.|+|.+|+.+|..||.++-.
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34666777888888999999999999999998853
No 212
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.10 E-value=0.49 Score=29.30 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=27.5
Q ss_pred hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIG 321 (469)
Q Consensus 291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~ 321 (469)
+.+...|..+.+.|++++|+..|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4456789999999999999999999999765
No 213
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=91.06 E-value=0.83 Score=34.93 Aligned_cols=60 Identities=20% Similarity=0.216 Sum_probs=40.1
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhHhHHHH
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDS-SFSDEEKQQAKVLKITCNLNNAA 347 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~-~~~~e~~~~~~~l~~~~~~N~a~ 347 (469)
..|..+-.+|.++=+.|+|.+|+.+|..||.++-..- ...++.....-.-++.-|.+||-
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE 64 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAE 64 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3466677788999999999999999999999885321 11223334444444555666663
No 214
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.03 E-value=0.93 Score=43.09 Aligned_cols=77 Identities=17% Similarity=0.175 Sum_probs=61.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHH
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDI 373 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~ 373 (469)
.=.|+.+|.+|+|..|...|..+++-++..+... -.++=++.|...+++.++|...+++++
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp------------dallKlg~~~~~l~~~d~A~atl~qv~------- 242 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP------------DALLKLGVSLGRLGNTDEACATLQQVI------- 242 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh------------HHHHHHHHHHHHhcCHHHHHHHHHHHH-------
Confidence 3479999999999999999999999888776543 245667999999999999988777766
Q ss_pred HHHHhhCCCCCCcchHHHHHHHHHH
Q 036950 374 KKALEIDPDNSLEAGWGVRMEYKLL 398 (469)
Q Consensus 374 ~~al~l~p~~~~~~~~~~~~~l~~~ 398 (469)
+--|+.. .++.....+
T Consensus 243 ----k~YP~t~-----aA~~Ak~~~ 258 (262)
T COG1729 243 ----KRYPGTD-----AAKLAKVAL 258 (262)
T ss_pred ----HHCCCCH-----HHHHHHHHH
Confidence 6778877 555444443
No 215
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=91.00 E-value=2.1 Score=48.02 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=25.5
Q ss_pred HhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 340 TCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 340 ~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.++..+|.||-++|++++|+..++++|++|
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D 146 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD 146 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 367889999999999999999888877544
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=90.74 E-value=0.61 Score=46.65 Aligned_cols=69 Identities=20% Similarity=0.142 Sum_probs=54.3
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+.++-.+|..+||.|++...+..|+.|+..=..+ -...+.+|+-++.+|+.+++|.+|+++-..=|.+.
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeD-----------l~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltla 85 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTED-----------LSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLA 85 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchH-----------HHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHH
Confidence 4455678999999999999999999999864322 23447788899999999999998888877665544
No 217
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=90.53 E-value=0.8 Score=48.47 Aligned_cols=59 Identities=12% Similarity=-0.022 Sum_probs=52.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
..|-.+...|++++|...|++|+.+.++ ...|..++.+|...|++++|+..+.+|+.++
T Consensus 425 ala~~~~~~g~~~~A~~~l~rAl~L~ps----------------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 425 ILAVQALVKGKTDEAYQAINKAIDLEMS----------------WLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3566667889999999999999997652 4578999999999999999999999999999
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=90.43 E-value=0.73 Score=47.10 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=28.1
Q ss_pred HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
...|+|++.+|+++|+|++|+..|++||+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~ 105 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN 105 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6689999999999999999999999888655
No 219
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.22 E-value=0.66 Score=45.73 Aligned_cols=96 Identities=21% Similarity=0.289 Sum_probs=71.9
Q ss_pred HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC----------CCCC-H----HH-------------HHHHHHHHHH
Q 036950 289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD----------SSFS-D----EE-------------KQQAKVLKIT 340 (469)
Q Consensus 289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~----------~~~~-~----e~-------------~~~~~~l~~~ 340 (469)
++.+..+.|..+|...++.+|+..+++.+..+.+. +... + ++ ..+-..+...
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788999999999999999999999877542 1100 0 00 0122334456
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHhhc----------------------------HHHHHHHHhhCCCCC
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLELD----------------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d----------------------------~~~~~~al~l~p~~~ 384 (469)
.|.|+|..+-++.+|.+++.+|.-.+.+- ++.|+.|++.-.++.
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~ 156 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND 156 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC
Confidence 79999999999999999999999999886 677888888766655
No 220
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.85 E-value=2.7 Score=41.09 Aligned_cols=99 Identities=16% Similarity=0.219 Sum_probs=67.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCC----------CCCHHHH--------HHHHHHHHHhHhHHHHHHHHhhCHH
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDS----------SFSDEEK--------QQAKVLKITCNLNNAACKLKLKEYK 356 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~----------~~~~e~~--------~~~~~l~~~~~~N~a~~~~kl~~~~ 356 (469)
..|..+++.|-+.+|-..++.+|...+... .+++.+. -...+..++.++-+|..|-.|++++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 567777777777777777777776544221 0111110 0112233678889999999999999
Q ss_pred HHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 036950 357 QAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLL 398 (469)
Q Consensus 357 ~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 398 (469)
+|++.+..||+++ +..+++.|.+.-.+. ++-..+..|
T Consensus 308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp-----eLf~NigLC 367 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP-----ELFCNIGLC 367 (478)
T ss_pred HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh-----HHHhhHHHH
Confidence 9999999999988 677888888877777 555554443
No 221
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=89.63 E-value=1.5 Score=47.02 Aligned_cols=62 Identities=18% Similarity=0.122 Sum_probs=55.5
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+...|-...+.++++.|...|++++.+.|+. ...++|++.+|+++++-.+|.....+||+.+
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~---------------~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTLEPDN---------------AEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhcCCCc---------------hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 3467888899999999999999999988765 5678999999999999999999999999888
No 222
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=89.58 E-value=2.3 Score=44.93 Aligned_cols=57 Identities=26% Similarity=0.332 Sum_probs=44.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 298 NVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 298 n~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.-+...|+|++|+..-......+.+. ...+--+|.|++++|++++|...+...|..+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk---------------~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN 68 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDK---------------LAVLEKRAELLLKLGRKEEAEKIYRELIDRN 68 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44556789999988887766654432 5667788999999999999999888877555
No 223
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=89.26 E-value=1.1 Score=33.28 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=29.9
Q ss_pred HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG 321 (469)
Q Consensus 287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~ 321 (469)
++.|..+-..|-.+=+.|+|.+|+.+|++|+.++.
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 35566777888888899999999999999999875
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.18 E-value=2.3 Score=36.52 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---- 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---- 369 (469)
.+.|-.+|+.++|..|+..|.+-|++-|..+..+ -+++=+++|++++.. ..+...- ....|
T Consensus 51 L~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd------------Ya~Y~~gL~~~~~~~--~~~~~~~-~~drD~~~~ 115 (142)
T PF13512_consen 51 LDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD------------YAYYMRGLSYYEQDE--GSLQSFF-RSDRDPTPA 115 (142)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc------------HHHHHHHHHHHHHhh--hHHhhhc-ccccCcHHH
Confidence 4788999999999999999999999998876654 345667888888765 1111111 11122
Q ss_pred ---HHHHHHHHhhCCCCC
Q 036950 370 ---KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 ---~~~~~~al~l~p~~~ 384 (469)
..+|+.++..-|++.
T Consensus 116 ~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 116 RQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHCcCCh
Confidence 567888888999987
No 225
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=89.15 E-value=1.5 Score=33.34 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=31.6
Q ss_pred HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
++.|..+-.+|...=+.|+|++|+.+|..|+..+-.
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 566778888899999999999999999999998853
No 226
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=89.04 E-value=2.6 Score=39.34 Aligned_cols=63 Identities=14% Similarity=0.097 Sum_probs=54.0
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
-..+++-.+++.++|..+.....+|+.+.++. +..+.-+++|.+..+.|..||....+|..+-
T Consensus 46 Y~tnralchlk~~~~~~v~~dcrralql~~N~---------------vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 46 YYTNRALCHLKLKHWEPVEEDCRRALQLDPNL---------------VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred hhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH---------------HHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 34578888999999999999999999987754 7778889999999999999999999997654
No 227
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=88.99 E-value=4.8 Score=42.72 Aligned_cols=73 Identities=21% Similarity=0.160 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCC----------------HHHHH---HHHHHHHHhHhHHHHHHHHhhCH
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFS----------------DEEKQ---QAKVLKITCNLNNAACKLKLKEY 355 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~----------------~e~~~---~~~~l~~~~~~N~a~~~~kl~~~ 355 (469)
-.|--+-..++|.+|+++|+.|+..-+++...- -+.+. +.+.-....|.-.|.++.-+|+|
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 456666677899999999999999776541100 01111 22222334556667778888888
Q ss_pred HHHHHHHHHHHh
Q 036950 356 KQAEKLCSKVLE 367 (469)
Q Consensus 356 ~~ai~~~~~al~ 367 (469)
..|+...+.-.+
T Consensus 160 ~~A~~il~ef~~ 171 (700)
T KOG1156|consen 160 KMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHHHHH
Confidence 888776655544
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=0.64 Score=43.92 Aligned_cols=63 Identities=17% Similarity=0.206 Sum_probs=51.5
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
-.++.+--+.-.++|..|.+.|.+++...+.+ +..-+|-|+|++.+|+..+|++..+.+++.+
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~---------------~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN---------------AVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCc---------------hhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34556666778899999999999999877665 5567899999999999999998887777544
No 229
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.66 E-value=1.9 Score=41.05 Aligned_cols=64 Identities=19% Similarity=0.202 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
+.|.++|+.|+|++|+..|+.+...+... . =..+...+..++..|+.++++.+..+..|-+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~e-g--------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls 246 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRRE-G--------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS 246 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhC-C--------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 79999999999999999999997655421 1 1345677888999999999999999999987764
No 230
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.64 E-value=0.9 Score=29.36 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=26.9
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
|..+.+.|+.++..|+|.+|...|.+++.....
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 455678999999999999999999999987653
No 231
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=88.46 E-value=1.7 Score=46.84 Aligned_cols=87 Identities=15% Similarity=0.097 Sum_probs=61.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----------
Q 036950 300 LFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---------- 369 (469)
Q Consensus 300 ~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---------- 369 (469)
+.+.++-++|..+-.+|-..++. .+..|.=++.|+...|++.+|...+..|+.+|
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~~~l---------------~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKIDPL---------------SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHhcCCchHHHHHHHHHHhcchh---------------hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 33444455555677777665543 36666667788888888888888888888877
Q ss_pred ---------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHH
Q 036950 370 ---------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYN 406 (469)
Q Consensus 370 ---------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (469)
..-+..|+++||.|. +++..+..+-+++....
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~-----eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNH-----EAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHccchH
Confidence 225777889999998 88888888877765554
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.42 E-value=4.9 Score=42.09 Aligned_cols=66 Identities=23% Similarity=0.307 Sum_probs=55.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+-.+|.-+..+|+.+.|++.|++|+..- .+ .+++...|+..++.||+-+.+|++|..++.+.++..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q--------~~---~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQ--------SE---WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccch--------hh---HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 3468889999999999999999999421 22 445667899999999999999999999999999876
No 233
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=88.18 E-value=2.5 Score=31.98 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=30.1
Q ss_pred HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
++.|..+-..|..+=+.|+|++|+.+|..|+..+-.
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 455667777888888899999999999999998854
No 234
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=88.05 E-value=2.1 Score=45.24 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=52.6
Q ss_pred HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCCCcchHHHHHHH
Q 036950 339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNSLEAGWGVRMEY 395 (469)
Q Consensus 339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~~~~~~~~~~~l 395 (469)
.-+++.+|++|.++|+|++|+.+.++||+.. .+.+..|-.+|+.|+ -++...
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR-----yiNsK~ 268 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR-----YINSKC 268 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH-----HHHHHH
Confidence 4467889999999999999999999999998 556788888999999 777777
Q ss_pred HHHHHHHHHHHHHH
Q 036950 396 KLLKEKVREYNKKD 409 (469)
Q Consensus 396 ~~~~~~~~~~~~~e 409 (469)
.+..-+-....+.+
T Consensus 269 aKy~LRa~~~e~A~ 282 (517)
T PF12569_consen 269 AKYLLRAGRIEEAE 282 (517)
T ss_pred HHHHHHCCCHHHHH
Confidence 66655544444444
No 235
>PRK10941 hypothetical protein; Provisional
Probab=87.89 E-value=2.9 Score=40.26 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=45.6
Q ss_pred HHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCC
Q 036950 335 KVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 335 ~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~ 384 (469)
..+......|+=.+|++.++|+.|+.+++.+|.++ ..||+..++..|++.
T Consensus 177 ~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 177 IEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 44667788999999999999999999999999998 789999999999988
No 236
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=87.47 E-value=8.7 Score=37.61 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=37.2
Q ss_pred HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL 366 (469)
Q Consensus 287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al 366 (469)
++.|.-.-+.+..+....+++.|.....+|+...+.+ +.+-.-++..++..|+|..|++..+.++
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c---------------vRAsi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKKC---------------VRASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc---------------eehhhhhhHHHHhccchHHHHHHHHHHH
Confidence 3444455555555666666666666666666554433 1122233555555666666666666666
Q ss_pred hhc
Q 036950 367 ELD 369 (469)
Q Consensus 367 ~~d 369 (469)
+.|
T Consensus 242 eQn 244 (389)
T COG2956 242 EQN 244 (389)
T ss_pred HhC
Confidence 655
No 237
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=87.46 E-value=0.79 Score=26.70 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=25.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIG 321 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~ 321 (469)
+...|..++..++|..|+..|+++++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 45789999999999999999999998644
No 238
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=87.31 E-value=9.3 Score=39.33 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=27.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSS 325 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~ 325 (469)
+.|+.+++.|++++|++.-++.+.-.+.++.
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~dp~ 409 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPEDPN 409 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence 6899999999999999999999987777643
No 239
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.03 E-value=1 Score=27.36 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=26.4
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
+...|..+++.|++++|+..|++.+...|.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 457899999999999999999999987764
No 240
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=86.31 E-value=3.4 Score=31.35 Aligned_cols=35 Identities=23% Similarity=0.044 Sum_probs=30.0
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
+.|..+-.+|+..=..|+|++|+..|..|++++-.
T Consensus 4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 45667777788888999999999999999999865
No 241
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.30 E-value=0.89 Score=44.51 Aligned_cols=80 Identities=15% Similarity=0.061 Sum_probs=59.1
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
|.-+..+++.+.+.++...|++-|..|+.+-++. ..-|--+..++.-+++|.+|-++...|+++|
T Consensus 148 a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds---------------a~~ykfrg~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 148 AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS---------------AKGYKFRGYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred hhhcccccceeeeccCCchhhhhhhhhhccCccc---------------ccccchhhHHHHHhhchHHHHHHHHHHHhcc
Confidence 3344577899999999999999999999876644 3344556666777999999999999999999
Q ss_pred -HHHHHHH-HhhCCCCC
Q 036950 370 -KLDIKKA-LEIDPDNS 384 (469)
Q Consensus 370 -~~~~~~a-l~l~p~~~ 384 (469)
-++.... .+..|+-.
T Consensus 213 ~dE~~~a~lKeV~p~a~ 229 (377)
T KOG1308|consen 213 YDEANSATLKEVFPNAG 229 (377)
T ss_pred ccHHHHHHHHHhccchh
Confidence 2233332 33456655
No 242
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=86.27 E-value=11 Score=28.76 Aligned_cols=58 Identities=17% Similarity=0.129 Sum_probs=42.6
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQ 411 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~ 411 (469)
-+...|.-.=+.|+|.+|+.++.++| +.|..+++.+|+.. ....++.+..++..+...
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~ai----e~l~~~lk~e~d~~---------~k~~~r~ki~eY~~RAE~ 65 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGI----DLLMQVLKGTKDEA---------KKKNLRQKISEYMDRAEA 65 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH----HHHHHHHhhCCCHH---------HHHHHHHHHHHHHHHHHH
Confidence 34555666777899999999999999 57889999998766 344556666666555543
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=86.05 E-value=3.8 Score=42.33 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK 364 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~ 364 (469)
+..+..+.+.|+.++|++.|...++..+.... ..++.|+..|++.++.|.++-....+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~-------------l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-------------LNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccch-------------hhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 46889999999999999999999987764322 45889999999999998887655544
No 244
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.81 E-value=3.7 Score=40.55 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=39.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 298 NVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 298 n~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.++..+.+|..|+....-.+. .++||. ..+.+=+|.||+++|+|++|+..+..+.+-+
T Consensus 30 edfls~rDytGAislLefk~~-------~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~ 87 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLN-------LDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKD 87 (557)
T ss_pred HHHHhcccchhHHHHHHHhhc-------cchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccC
Confidence 455666677777666555442 222332 2233446999999999999999999988766
No 245
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=84.87 E-value=6.8 Score=29.61 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=30.4
Q ss_pred HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
+..|..+..+|..+=+.|+|++|+.+|..|+..+..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456677777888888899999999999999998854
No 246
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.64 E-value=17 Score=34.53 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=56.9
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh---CHHHHHHHHHHHH
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK---EYKQAEKLCSKVL 366 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~---~~~~ai~~~~~al 366 (469)
.+.+.+.++-|+..|+|.+|.-||++.+-.-|.. ..++.-+|-.++-+| ++..|..++.++|
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n---------------~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN---------------PLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4456788999999999999999999999876654 556666677666665 7899999999999
Q ss_pred hhcHHHHHHHH
Q 036950 367 ELDKLDIKKAL 377 (469)
Q Consensus 367 ~~d~~~~~~al 377 (469)
++..++++..+
T Consensus 219 kl~~~~~ral~ 229 (289)
T KOG3060|consen 219 KLNPKNLRALF 229 (289)
T ss_pred HhChHhHHHHH
Confidence 99955444443
No 247
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.59 E-value=14 Score=34.85 Aligned_cols=116 Identities=14% Similarity=0.151 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---- 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---- 369 (469)
.+++-.....-+-++|+..|++++.++..+.. ..+...++.-.+..+.+++.|.+|-....+-..+.
T Consensus 114 leKAak~lenv~Pd~AlqlYqralavve~~dr---------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~ 184 (308)
T KOG1585|consen 114 LEKAAKALENVKPDDALQLYQRALAVVEEDDR---------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCD 184 (308)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHh
Confidence 45666677888899999999999998865421 22223344444555556665555544333322111
Q ss_pred ------------------HHHHHHHHhhCCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 036950 370 ------------------KLDIKKALEIDPDNS-LEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAK 419 (469)
Q Consensus 370 ------------------~~~~~~al~l~p~~~-~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~ 419 (469)
.+|+..+-+.-.... . +.-.-...-..+++.+..+++.+...+++|...
T Consensus 185 ~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi-p~f~~sed~r~lenLL~ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 185 AYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI-PAFLKSEDSRSLENLLTAYDEGDIEEIKKVLSS 252 (308)
T ss_pred hcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC-ccccChHHHHHHHHHHHHhccCCHHHHHHHHcC
Confidence 456666554422100 0 000122455667777888888777777777664
No 248
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=84.37 E-value=2.1 Score=41.83 Aligned_cols=88 Identities=19% Similarity=0.306 Sum_probs=68.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc---H
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---K 370 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---~ 370 (469)
-+++-..+--|+|..|+.-.++|+.+-+.. .++|.-=|.|++.|++|.+|+..|+..|++| .
T Consensus 123 ~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h---------------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 123 TNRAAAQLYLGNYRSALNDCSAALKLKPTH---------------LKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCcch---------------hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 356666666799999999999999987643 7788888999999999999999999999998 3
Q ss_pred HHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 036950 371 LDIKKALEIDPDNSLEAGWGVRMEYKLLKEK 401 (469)
Q Consensus 371 ~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~ 401 (469)
..++-+-.++|++. .+..+...++++
T Consensus 188 ~~~~l~~l~~k~~~-----~~L~~er~~rK~ 213 (390)
T KOG0551|consen 188 KAIELRNLIHKNDK-----LKLIEERDVRKK 213 (390)
T ss_pred HHHHHHhhcCcchH-----HHHHHHHHHHHH
Confidence 44444444789988 555554444443
No 249
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=84.09 E-value=3.9 Score=41.82 Aligned_cols=59 Identities=20% Similarity=0.156 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
...|.-+.+.++|.+|...|++++..-|. ...|.-+|.++.++|+.++|.+++.++|.+
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~~P~----------------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQRPD----------------AYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35799999999999999999999987654 233567899999999999999999988854
No 250
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=84.08 E-value=11 Score=29.02 Aligned_cols=65 Identities=17% Similarity=0.102 Sum_probs=48.4
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHhHhHHHHHHHHh
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD------SSFSDEEKQQAKVLKITCNLNNAACKLKL 352 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~------~~~~~e~~~~~~~l~~~~~~N~a~~~~kl 352 (469)
+.|-..-+.|-.+=..|+.++|+..|++|++.+..- .....++++.+..+..+.-.|+..+--++
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL 76 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL 76 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566666666799999999999999988532 13345788888888888888888776554
No 251
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.67 E-value=5 Score=40.82 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=29.6
Q ss_pred HHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 335 KVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 335 ~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
-.-.+++++..+-||+-+++|.+|++.++.+|-.
T Consensus 160 ~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 160 PACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred cchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778999999999999999999999999854
No 252
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=83.07 E-value=1.4 Score=45.16 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+++-+++|.++|..|+.-..+||+..+. ++++|.-+|.+++++++|.+|+.+++++..+.
T Consensus 43 nRa~a~lK~e~~~~Al~Da~kaie~dP~---------------~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 43 NRALAHLKVESFGGALHDALKAIELDPT---------------YIKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred hhhhhheeechhhhHHHHHHhhhhcCch---------------hhheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 5668889999999999999999997654 38899999999999999999999999999887
No 253
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.76 E-value=2.5 Score=27.51 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=24.1
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+|.-+|-+.+-.++|..|+.++.++|++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 56667888888889999999999999753
No 254
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=82.75 E-value=9.5 Score=41.37 Aligned_cols=69 Identities=26% Similarity=0.237 Sum_probs=55.7
Q ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHH--HHHHHHhhc---------
Q 036950 301 FKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEK--LCSKVLELD--------- 369 (469)
Q Consensus 301 fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~--~~~~al~~d--------- 369 (469)
-.+|++.+|...|..|+.+.|.. ..+..-+|.|+++.|+-.-|.+ ....++++|
T Consensus 695 ~~~~~~~EA~~af~~Al~ldP~h---------------v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~ 759 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALALDPDH---------------VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY 759 (799)
T ss_pred HHHHhhHHHHHHHHHHHhcCCCC---------------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence 35577889999999999887765 4556778999999999888888 899999999
Q ss_pred --------------HHHHHHHHhhCCCCC
Q 036950 370 --------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 --------------~~~~~~al~l~p~~~ 384 (469)
-++|..|+++++.+.
T Consensus 760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 760 LGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 456777777777765
No 255
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.60 E-value=12 Score=33.94 Aligned_cols=65 Identities=22% Similarity=0.155 Sum_probs=51.3
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
...+.+..++-.++++.|....+.++..-.+ ..+...+-.++|..++.++++++|+...+..-.-
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~ 155 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIKEE 155 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence 3457888999999999999999999864221 3455667789999999999999999887765544
No 256
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=82.30 E-value=6.7 Score=28.81 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=40.3
Q ss_pred HHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036950 346 AACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIF 417 (469)
Q Consensus 346 a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf 417 (469)
+..|++.++|+.|+.+++.++ .++|++. .+...+..+........+.... +.+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l-----------~~~p~~~-----~~~~~~a~~~~~~g~~~~A~~~-l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERAL-----------ELDPDDP-----ELWLQRARCLFQLGRYEEALED-LERAL 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHH-----------HhCcccc-----hhhHHHHHHHHHhccHHHHHHH-HHHHH
Confidence 567899999999998888776 7788888 7777777777776655554432 44444
No 257
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=82.25 E-value=15 Score=39.46 Aligned_cols=104 Identities=11% Similarity=0.025 Sum_probs=70.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc--------
Q 036950 298 NVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-------- 369 (469)
Q Consensus 298 n~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-------- 369 (469)
+-..-.++.++|++...+||+.++.+ .++|+=+++.+-.+++.+.|...|..-++..
T Consensus 659 ~~er~ld~~eeA~rllEe~lk~fp~f---------------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWl 723 (913)
T KOG0495|consen 659 NLERYLDNVEEALRLLEEALKSFPDF---------------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWL 723 (913)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCch---------------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHH
Confidence 33334556666777777777666654 7788899999999999999999998888776
Q ss_pred ---------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 036950 370 ---------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINK 422 (469)
Q Consensus 370 ---------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~ 422 (469)
+..|.++...+|.|. ...-+..+++.+..-....+ .++.+.++....
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk~~-----~lwle~Ir~ElR~gn~~~a~-~lmakALQecp~ 785 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPKNA-----LLWLESIRMELRAGNKEQAE-LLMAKALQECPS 785 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCCcc-----hhHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCc
Confidence 557888999999998 66555555444433222222 234555555443
No 258
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=82.08 E-value=15 Score=31.46 Aligned_cols=73 Identities=19% Similarity=0.145 Sum_probs=57.3
Q ss_pred HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950 285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK 364 (469)
Q Consensus 285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~ 364 (469)
.+.+.+....+.....+..+++..+...+...+.-.+.. .......+.+|.+++..|+|++|+..++.
T Consensus 6 ~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s------------~ya~~A~l~lA~~~~~~g~~~~A~~~l~~ 73 (145)
T PF09976_consen 6 QQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSS------------PYAALAALQLAKAAYEQGDYDEAKAALEK 73 (145)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 345667777788888888999999888888888765532 13355678899999999999999999999
Q ss_pred HHhhc
Q 036950 365 VLELD 369 (469)
Q Consensus 365 al~~d 369 (469)
++...
T Consensus 74 ~~~~~ 78 (145)
T PF09976_consen 74 ALANA 78 (145)
T ss_pred HHhhC
Confidence 88643
No 259
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=82.07 E-value=3 Score=30.27 Aligned_cols=45 Identities=29% Similarity=0.412 Sum_probs=34.4
Q ss_pred HHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950 349 KLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD 409 (469)
Q Consensus 349 ~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e 409 (469)
+++.|+|++|+..+++++ ..+|+|. +++-.+..+.-+..+..+..
T Consensus 1 ll~~~~~~~A~~~~~~~l-----------~~~p~~~-----~~~~~la~~~~~~g~~~~A~ 45 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKAL-----------QRNPDNP-----EARLLLAQCYLKQGQYDEAE 45 (68)
T ss_dssp HHHTTHHHHHHHHHHHHH-----------HHTTTSH-----HHHHHHHHHHHHTT-HHHHH
T ss_pred ChhccCHHHHHHHHHHHH-----------HHCCCCH-----HHHHHHHHHHHHcCCHHHHH
Confidence 367889999988776665 7899998 88888888877776666555
No 260
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=81.96 E-value=16 Score=27.56 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=37.6
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q 036950 343 LNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDV 410 (469)
Q Consensus 343 ~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~ 410 (469)
...|..+=+.|+|++|+.++..++ +.|..+++.+|+.. ....++.+..++..+-.
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~a~----e~l~~~~~~~~~~~---------~~~~~~~k~~eyl~raE 66 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKKAI----EYLLEGIKVESDSK---------RREAVKAKAAEYLDRAE 66 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHhccCCCHH---------HHHHHHHHHHHHHHHHH
Confidence 445666667899999999999999 57778888887644 23344455555544443
No 261
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=81.02 E-value=11 Score=38.47 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=59.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHH
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKK 375 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~ 375 (469)
.+..++..++-.+|++..+++|...+.+ ..++.-.|..+++.++|+.|+..+.+|.
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d---------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av--------- 261 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQD---------------SELLNLQAEFLLSKKKYELALEIAKKAV--------- 261 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHH---------
Confidence 4555666677778888888888655543 4455666888888888888887777665
Q ss_pred HHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950 376 ALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD 409 (469)
Q Consensus 376 al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e 409 (469)
.+.|++- .....|.++-..+.+.+..-
T Consensus 262 --~lsP~~f-----~~W~~La~~Yi~~~d~e~AL 288 (395)
T PF09295_consen 262 --ELSPSEF-----ETWYQLAECYIQLGDFENAL 288 (395)
T ss_pred --HhCchhH-----HHHHHHHHHHHhcCCHHHHH
Confidence 7788888 77778888777766665543
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.85 E-value=17 Score=35.11 Aligned_cols=89 Identities=20% Similarity=0.247 Sum_probs=66.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH-------
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV------- 365 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a------- 365 (469)
...++..+...+++..|...+..++...+.. ..+..-+|.||+.+|+.+.|..-....
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---------------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~ 201 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPEN---------------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK 201 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCccc---------------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhh
Confidence 3467889999999999999999999988754 334456799999999987766554431
Q ss_pred --------Hhhc--------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHH
Q 036950 366 --------LELD--------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEK 401 (469)
Q Consensus 366 --------l~~d--------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~ 401 (469)
|++- ..++++.+..||+|. +++-.+......
T Consensus 202 ~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~-----~aa~~lA~~~~~ 248 (304)
T COG3118 202 AAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDV-----EAALALADQLHL 248 (304)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCH-----HHHHHHHHHHHH
Confidence 1111 678999999999998 766665555443
No 263
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.75 E-value=6.9 Score=41.21 Aligned_cols=82 Identities=17% Similarity=0.128 Sum_probs=60.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----------
Q 036950 300 LFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---------- 369 (469)
Q Consensus 300 ~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---------- 369 (469)
+...|+-..|+.+..+|+..-+.-.. .-..|+|...++-+-..+|-....++|.+.
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~--------------v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~ 682 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQD--------------VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSL 682 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhc--------------ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhc
Confidence 33567778888888888875543211 124677777888777777877788877776
Q ss_pred -------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHH
Q 036950 370 -------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKE 400 (469)
Q Consensus 370 -------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~ 400 (469)
++.|+.|++++|++. .+..-|..+.=
T Consensus 683 g~~~l~l~~i~~a~~~~~~a~~~~~~~~-----~~~~~l~~i~c 721 (886)
T KOG4507|consen 683 GNAYLALKNISGALEAFRQALKLTTKCP-----ECENSLKLIRC 721 (886)
T ss_pred chhHHHHhhhHHHHHHHHHHHhcCCCCh-----hhHHHHHHHHH
Confidence 678999999999999 88887777654
No 264
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.39 E-value=2.2 Score=24.94 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.6
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHH
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCS 363 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~ 363 (469)
+++|+|..+..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 57899999999999999998765
No 265
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.94 E-value=7.4 Score=40.95 Aligned_cols=77 Identities=13% Similarity=0.117 Sum_probs=58.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+.+.+-.+...|+|.+|++...+|++++...-..++...++++.....+..-+|-++..+|+-.+|...+...|+.+
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 35666777889999999999999987764322222222344555567777888999999999999999999999887
No 266
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=79.87 E-value=18 Score=26.58 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=31.0
Q ss_pred HhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCC
Q 036950 342 NLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNS 384 (469)
Q Consensus 342 ~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~ 384 (469)
+.+.|.-+=+.|+|.+|+..+.+++ +.|..+++.+++..
T Consensus 8 ~~~~Av~~D~~g~~~~A~~~Y~~ai----~~l~~~~~~~~~~~ 46 (69)
T PF04212_consen 8 LIKKAVEADEAGNYEEALELYKEAI----EYLMQALKSESNPE 46 (69)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHH----HHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH----HHHHHHhccCCCHH
Confidence 4556666667899999999999999 57888888887544
No 267
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=79.21 E-value=6.1 Score=40.51 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHH--HHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 295 EEGNVLFKAGKYERASKRYEQ--AVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~--al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
..|.-+++.|+|.+|.+.+++ ++...+. ...+.-++..+.++|+.++|.++++++|.
T Consensus 340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~----------------~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 340 ALGQLLMKHGEFIEAADAFKNVAACKEQLD----------------ANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHcccHHHHHHHHHHhHHhhcCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 568899999999999999994 5554432 12244679999999999999999998875
No 268
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.03 E-value=3.1 Score=27.99 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=22.9
Q ss_pred HhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 342 NLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 342 ~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
.+|+|.+|+.+|+++.|..-.++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 37899999999999999998888773
No 269
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=78.89 E-value=23 Score=30.10 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=54.7
Q ss_pred HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
.+..+.+++..+.-+|+-.+|+.-..+|+.+-..- ....-..|.-|+..|-.+|+-+.|..++..|-++
T Consensus 76 raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-----------trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 76 RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-----------TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-----------chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 45566788899999999999999999999876432 1122456888999999999999998877776654
Q ss_pred c
Q 036950 369 D 369 (469)
Q Consensus 369 d 369 (469)
-
T Consensus 145 G 145 (175)
T KOG4555|consen 145 G 145 (175)
T ss_pred C
Confidence 4
No 270
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=78.66 E-value=2.8 Score=40.49 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=31.8
Q ss_pred HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950 285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG 321 (469)
Q Consensus 285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~ 321 (469)
..+..|..+-..+...=+.++|.+|++.|+.|++|+-
T Consensus 5 ~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~ 41 (439)
T KOG0739|consen 5 SFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFL 41 (439)
T ss_pred hHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHH
Confidence 4667777888888888899999999999999999874
No 271
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=77.58 E-value=2 Score=26.98 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=22.4
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950 373 IKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY 405 (469)
Q Consensus 373 ~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~ 405 (469)
|++|++++|+|. .+...|..+-....+.
T Consensus 2 y~kAie~~P~n~-----~a~~nla~~~~~~g~~ 29 (34)
T PF13431_consen 2 YKKAIELNPNNA-----EAYNNLANLYLNQGDY 29 (34)
T ss_pred hHHHHHHCCCCH-----HHHHHHHHHHHHCcCH
Confidence 789999999999 8888888876654433
No 272
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.78 E-value=19 Score=34.94 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=37.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 299 VLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 299 ~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+.+..+|.+||++-+.-....+.. ...++-++.||+...+|..|-.++++.-.+-
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~---------------rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~ 74 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRS---------------RAGLSLLGYCYYRLQEFALAAECYEQLGQLH 74 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccc---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3456667777776655444432211 3345667889999999998888888877665
No 273
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.76 E-value=16 Score=34.23 Aligned_cols=74 Identities=23% Similarity=0.244 Sum_probs=47.6
Q ss_pred HHHHhhhcHHHHHHHHh-cCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950 286 KIEAAGKKKEEGNVLFK-AGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSK 364 (469)
Q Consensus 286 ~~~~a~~~k~~Gn~~fk-~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~ 364 (469)
+++.|..+..++-..|| .++|..|-..|.+|..+--...+ +.-...+|.-.+-||-|- +..+|+.+.++
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~s---------khDaat~YveA~~cykk~-~~~eAv~cL~~ 98 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGS---------KHDAATTYVEAANCYKKV-DPEEAVNCLEK 98 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC---------chhHHHHHHHHHHHhhcc-ChHHHHHHHHH
Confidence 55555555555544444 77888888888888876432211 112355666667777664 78888888888
Q ss_pred HHhhc
Q 036950 365 VLELD 369 (469)
Q Consensus 365 al~~d 369 (469)
++++-
T Consensus 99 aieIy 103 (288)
T KOG1586|consen 99 AIEIY 103 (288)
T ss_pred HHHHH
Confidence 88765
No 274
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.13 E-value=28 Score=33.29 Aligned_cols=52 Identities=25% Similarity=0.281 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 303 AGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 303 ~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+++++|.-.|+.--.-.+.- ..+.+-+|.|++.+++|++|......+|.-+
T Consensus 186 gek~qdAfyifeE~s~k~~~T---------------~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPT---------------PLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred chhhhhHHHHHHHHhcccCCC---------------hHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 345888888888776632211 4466789999999999999999999999877
No 275
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=75.99 E-value=31 Score=25.96 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=38.1
Q ss_pred HHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 036950 344 NNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQ 411 (469)
Q Consensus 344 N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~ 411 (469)
..|.-.-+.|+|++|+..+..++ +.|..+++.+|+.. ....++.+..++..+-..
T Consensus 11 ~~Av~~D~~g~y~eA~~~Y~~ai----e~l~~~~k~e~~~~---------~k~~~~~k~~eyl~RaE~ 65 (75)
T cd02678 11 KKAIEEDNAGNYEEALRLYQHAL----EYFMHALKYEKNPK---------SKESIRAKCTEYLDRAEK 65 (75)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH----HHHHHHHhhCCCHH---------HHHHHHHHHHHHHHHHHH
Confidence 34444455799999999999998 57888888888544 344566666666555433
No 276
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.13 E-value=37 Score=31.48 Aligned_cols=112 Identities=13% Similarity=0.044 Sum_probs=73.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHh
Q 036950 299 VLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALE 378 (469)
Q Consensus 299 ~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~ 378 (469)
.+-....+..|+..|.-|+-....... -....+.+++.+|-+|--+++.+.......+|+ +.|.+|+.
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~--------~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al----~~y~~a~~ 153 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKE--------KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKAL----EFYEEAYE 153 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH----HHHHHHHH
Confidence 555667899999999999987542211 122457789999999999999888888888888 56777777
Q ss_pred hCCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 036950 379 IDPDNS-LEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFAKINKL 423 (469)
Q Consensus 379 l~p~~~-~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~~~~~~ 423 (469)
.+.... ......+.=.+..+..++.... ..++.|+++++.....
T Consensus 154 ~e~~~~~~~~~~~l~YLigeL~rrlg~~~-eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 154 NEDFPIEGMDEATLLYLIGELNRRLGNYD-EAKRWFSRVIGSKKAS 198 (214)
T ss_pred hCcCCCCCchHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHcCCCCC
Confidence 654411 0001133344555555655554 4455677777765443
No 277
>PLN03077 Protein ECB2; Provisional
Probab=74.03 E-value=21 Score=40.52 Aligned_cols=107 Identities=12% Similarity=0.077 Sum_probs=70.2
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHH--hcCCC------------CCCHHHHHHHHHHH--------HHhHhHHHHHHH
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNY--IGYDS------------SFSDEEKQQAKVLK--------ITCNLNNAACKL 350 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~--~~~~~------------~~~~e~~~~~~~l~--------~~~~~N~a~~~~ 350 (469)
+....+.+.+.|++++|+..|++.... .|+.. ...++-...++.+. ...|..+..+|.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 345678888999999999999987752 12110 01122223333333 236788899999
Q ss_pred HhhCHHHHHHHHHHH-Hhhc--------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950 351 KLKEYKQAEKLCSKV-LELD--------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE 404 (469)
Q Consensus 351 kl~~~~~ai~~~~~a-l~~d--------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~ 404 (469)
+.|++++|.+..++. ++-| ....+++++++|++. ...-.|..+.....+
T Consensus 637 r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~-----~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV-----GYYILLCNLYADAGK 706 (857)
T ss_pred hCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc-----chHHHHHHHHHHCCC
Confidence 999999999988875 2323 345677888999998 776666666544333
No 278
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=73.59 E-value=36 Score=25.50 Aligned_cols=54 Identities=26% Similarity=0.346 Sum_probs=37.0
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950 343 LNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD 409 (469)
Q Consensus 343 ~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e 409 (469)
.+.|.-.=+.|+|++|+..+..++ +.|..+++.+|+.. ....++.+..++..+-
T Consensus 10 ~~~Av~~D~~g~~~~Al~~Y~~a~----e~l~~~~~~~~~~~---------~k~~l~~k~~~yl~Ra 63 (75)
T cd02656 10 IKQAVKEDEDGNYEEALELYKEAL----DYLLQALKAEKEPK---------LRKLLRKKVKEYLDRA 63 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH----HHHHHHhccCCCHH---------HHHHHHHHHHHHHHHH
Confidence 445555556799999999999998 57788887777644 3444555555555444
No 279
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=73.29 E-value=49 Score=34.49 Aligned_cols=90 Identities=21% Similarity=0.194 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc------------------
Q 036950 308 RASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD------------------ 369 (469)
Q Consensus 308 ~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d------------------ 369 (469)
+-...|++|..-++.+ ..+++|-..-.-|-+.|.+.-..|.++|...
T Consensus 89 rIv~lyr~at~rf~~D---------------~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n 153 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGD---------------VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN 153 (568)
T ss_pred HHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc
Confidence 4457889998888766 6677777655556666999999999999887
Q ss_pred ------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036950 370 ------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIF 417 (469)
Q Consensus 370 ------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf 417 (469)
++-|.++|..+|++. .++.+.-+++-........+++...+..
T Consensus 154 ~ni~saRalflrgLR~npdsp-----~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~ 202 (568)
T KOG2396|consen 154 LNIESARALFLRGLRFNPDSP-----KLWKEYFRMELMYAEKLRNRREELGLDS 202 (568)
T ss_pred cchHHHHHHHHHHhhcCCCCh-----HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 566889999999999 8998888877766666666655444333
No 280
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=72.82 E-value=5.6 Score=37.04 Aligned_cols=56 Identities=27% Similarity=0.265 Sum_probs=49.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 299 VLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 299 ~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+++.+++..|.+.|.+|+.+.+.+ ..-+..++-...|.|+++.|...+.++|++|
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w---------------~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEW---------------AAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchh---------------hhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4678899999999999999988765 4566778888899999999999999999998
No 281
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.27 E-value=13 Score=41.14 Aligned_cols=57 Identities=26% Similarity=0.341 Sum_probs=43.3
Q ss_pred HHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhH
Q 036950 286 KIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCN 342 (469)
Q Consensus 286 ~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~ 342 (469)
++....+..++|-.+++.|+|.+|+++|..+|-.++-.-.-+.++..+++++...+.
T Consensus 987 ~l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~ 1043 (1202)
T KOG0292|consen 987 KLSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICR 1043 (1202)
T ss_pred cHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHH
Confidence 366677778999999999999999999999998776544444455666666655553
No 282
>PRK10941 hypothetical protein; Provisional
Probab=71.69 E-value=18 Score=34.85 Aligned_cols=62 Identities=15% Similarity=-0.041 Sum_probs=51.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+.+.=+.+.+.++|..|+++-.+.+.+.|.++ .-+--|+.+|.+++.|..|+.|.+.-|+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp---------------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDP---------------YEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 34556788899999999999999999988762 223347999999999999999999988765
No 283
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=71.49 E-value=74 Score=32.09 Aligned_cols=102 Identities=18% Similarity=0.197 Sum_probs=74.4
Q ss_pred HHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHH
Q 036950 284 QEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCS 363 (469)
Q Consensus 284 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~ 363 (469)
..|..+|.....+|-.-+-.|+|.+|.+.-.++-+.-+ ....+|+=-|.+--.+|+++.|=.+..
T Consensus 78 ~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e---------------~p~l~~l~aA~AA~qrgd~~~an~yL~ 142 (400)
T COG3071 78 RRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGE---------------QPVLAYLLAAEAAQQRGDEDRANRYLA 142 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCc---------------chHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 35778888888899999999999999999888665322 114455556777777888888888888
Q ss_pred HHHhh--c----------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950 364 KVLEL--D----------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY 405 (469)
Q Consensus 364 ~al~~--d----------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~ 405 (469)
++-++ | ...+..+++..|.+. .+.+...++-...+..
T Consensus 143 eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~-----~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 143 EAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP-----EVLRLALRAYIRLGAW 203 (400)
T ss_pred HHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh-----HHHHHHHHHHHHhccH
Confidence 88877 3 556777788888888 7776666665544443
No 284
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=70.83 E-value=8.1 Score=35.73 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=56.6
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+..+.=.|--+-..|+|+.|...|...+++.|.. --.+.||+++++--|+|+-|.++..+--+-|
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y---------------~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY---------------NYAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc---------------hHHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 4445567888899999999999999999887754 4578999999999999999999999998888
No 285
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.72 E-value=43 Score=33.97 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
+.|.-+...|+++.|+++|.++-.|+... ...+..+.|+-.+-+-+++|.....+.++|.+-
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTSA------------KHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcch------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 57777888999999999999999888643 233667889989999999999999999998864
No 286
>PRK04841 transcriptional regulator MalT; Provisional
Probab=70.09 E-value=19 Score=41.00 Aligned_cols=30 Identities=13% Similarity=0.051 Sum_probs=25.4
Q ss_pred HHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 339 ITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
..++.|+|.+++..|+++.|...+.+++.+
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 346688899999999999999999888875
No 287
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.25 E-value=72 Score=32.69 Aligned_cols=126 Identities=12% Similarity=0.021 Sum_probs=73.9
Q ss_pred HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC----------------------------CCCCHHHHH------
Q 036950 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD----------------------------SSFSDEEKQ------ 332 (469)
Q Consensus 287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~----------------------------~~~~~e~~~------ 332 (469)
+-.+..+.+.|..+.+.+.|..|+-..-.|-+++..+ .-+++.+..
T Consensus 160 lmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~k 239 (568)
T KOG2561|consen 160 LMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARK 239 (568)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHH
Confidence 5567788899999999999999998776666554322 112232221
Q ss_pred ---------------------HHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-------------------HHH
Q 036950 333 ---------------------QAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-------------------KLD 372 (469)
Q Consensus 333 ---------------------~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-------------------~~~ 372 (469)
--..+...+++=.+...++.|+-++|.++.+.|-..- ..+
T Consensus 240 gf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mGfeesd 319 (568)
T KOG2561|consen 240 GFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMGFEESD 319 (568)
T ss_pred hhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcCCCchH
Confidence 1123445566666777777777777777776664321 567
Q ss_pred HHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 036950 373 IKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQF 412 (469)
Q Consensus 373 ~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~ 412 (469)
.+.||.....+-..|+.-+....+++.++..++.+.++.+
T Consensus 320 aRlaLRsc~g~Vd~AvqfI~erre~laq~R~k~~a~Ere~ 359 (568)
T KOG2561|consen 320 ARLALRSCNGDVDSAVQFIIERREKLAQKREKDLAREREI 359 (568)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7778877666552222233444444444433333444333
No 288
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.04 E-value=86 Score=29.76 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCC
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSS 325 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~ 325 (469)
..++.+-..++|++|..+..+|++..+....
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrs 66 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRS 66 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhccc
Confidence 3445555577788888888888877665543
No 289
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=68.31 E-value=25 Score=34.32 Aligned_cols=72 Identities=22% Similarity=0.288 Sum_probs=46.9
Q ss_pred HHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950 287 IEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL 366 (469)
Q Consensus 287 ~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al 366 (469)
...|.-....+....+.|+.++|.+.|.-|+.+.+..+ .+++.+|+|.+--.+ .+
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p----------------------~~L~e~G~f~E~~~~---iv 167 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP----------------------QILIEMGQFREMHNE---IV 167 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH----------------------HHHHHHhHHHHhhhh---hH
Confidence 33444445567788999999999999999999988652 223344444432211 11
Q ss_pred hhcHHHHHHHHhhCCCCC
Q 036950 367 ELDKLDIKKALEIDPDNS 384 (469)
Q Consensus 367 ~~d~~~~~~al~l~p~~~ 384 (469)
+. -+++-+||.++|.|.
T Consensus 168 ~A-Dq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 168 EA-DQCYVKALTISPGNS 184 (472)
T ss_pred hh-hhhhheeeeeCCCch
Confidence 11 246677888999988
No 290
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=67.66 E-value=43 Score=34.94 Aligned_cols=90 Identities=21% Similarity=0.118 Sum_probs=58.6
Q ss_pred CCChHHHHHHhhhcHHHHHHHH---------hcCCHHHHHHHHHHHHHHhcCCCCCCH------HHHH----HHHHHHHH
Q 036950 280 DMNTQEKIEAAGKKKEEGNVLF---------KAGKYERASKRYEQAVNYIGYDSSFSD------EEKQ----QAKVLKIT 340 (469)
Q Consensus 280 ~l~~~e~~~~a~~~k~~Gn~~f---------k~~~~~~A~~~Y~~al~~~~~~~~~~~------e~~~----~~~~l~~~ 340 (469)
+-++..|++.|.+-.+.-.+|- ......+|.+.|++|++.-+..-..+. ...+ ..-....-
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y 260 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVY 260 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhh
Confidence 3467788888877766554332 234478899999999987654311110 0000 11122344
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+.-.+|+|.-|+|+.++||+.+...++..
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~ 289 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEF 289 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 55678999999999999999999998654
No 291
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=67.55 E-value=97 Score=30.06 Aligned_cols=84 Identities=18% Similarity=0.099 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHH---HHHHHHHHhhc-
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQA---EKLCSKVLELD- 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~a---i~~~~~al~~d- 369 (469)
.+.+|.+.+.+++.+|+..|.+.+.- ..+.++ ..........+|+...|...|+|..- +...+.+.+--
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~k-----g~s~de--k~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGK-----GVSKDE--KTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcC-----CCChhh--hhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc
Confidence 57889999999999999999998863 111111 11222244567899999999986543 33333333321
Q ss_pred ----HHHHHHHHhhCCCCC
Q 036950 370 ----KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 ----~~~~~~al~l~p~~~ 384 (469)
.+-++..++.-|..+
T Consensus 80 k~k~~KiirtLiekf~~~~ 98 (421)
T COG5159 80 KPKITKIIRTLIEKFPYSS 98 (421)
T ss_pred chhHHHHHHHHHHhcCCCC
Confidence 334555555555544
No 292
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=67.33 E-value=52 Score=24.89 Aligned_cols=53 Identities=17% Similarity=0.165 Sum_probs=38.8
Q ss_pred HHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036950 350 LKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGN 415 (469)
Q Consensus 350 ~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~ 415 (469)
-+.++|.+|+..+..+| +.|..+++-+++.. ....++.+..++..+.-+++..
T Consensus 17 d~~~~y~eA~~~Y~~~i----~~~~~~~k~e~~~~---------~k~~ir~K~~eYl~RAE~i~~~ 69 (75)
T cd02677 17 EEEGDYEAAFEFYRAGV----DLLLKGVQGDSSPE---------RREAVKRKIAEYLKRAEEILRL 69 (75)
T ss_pred HHHhhHHHHHHHHHHHH----HHHHHHhccCCCHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34489999999999998 56777777776655 4566777777777776665544
No 293
>PRK11906 transcriptional regulator; Provisional
Probab=65.98 E-value=21 Score=36.77 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----------------
Q 036950 306 YERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---------------- 369 (469)
Q Consensus 306 ~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---------------- 369 (469)
-..|.+.-.+|+.+.+.+ ..++.-+|.++...++++.|+..+++|+.++
T Consensus 320 ~~~a~~~A~rAveld~~D---------------a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~ 384 (458)
T PRK11906 320 AQKALELLDYVSDITTVD---------------GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH 384 (458)
T ss_pred HHHHHHHHHHHHhcCCCC---------------HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 344555555555554444 5677788888888888999999999998888
Q ss_pred -------HHHHHHHHhhCCCCC
Q 036950 370 -------KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 -------~~~~~~al~l~p~~~ 384 (469)
.+.+++|++++|.-.
T Consensus 385 ~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 385 NEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred cCCHHHHHHHHHHHhccCchhh
Confidence 567778888888755
No 294
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=65.95 E-value=13 Score=36.90 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=24.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYD 323 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~ 323 (469)
.||.+...+.|++|+..|+.|+++....
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~ 155 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNN 155 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 7888999999999999999999987643
No 295
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=65.65 E-value=14 Score=34.84 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHhHhHHHHHHHH-hhCHHHHHHHHHHHHh
Q 036950 306 YERASKRYEQAVNYIGY-DSSFSDEEKQQAKVLKITCNLNNAACKLK-LKEYKQAEKLCSKVLE 367 (469)
Q Consensus 306 ~~~A~~~Y~~al~~~~~-~~~~~~e~~~~~~~l~~~~~~N~a~~~~k-l~~~~~ai~~~~~al~ 367 (469)
-+.|...|++|+.+... .+. ..+++..+.+|.|..|+. +++.++|+..+.+|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~--------~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPP--------THPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCT--------TSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCC--------CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 47899999999998765 222 257888999999988765 7999999999998773
No 296
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=65.36 E-value=27 Score=30.36 Aligned_cols=56 Identities=36% Similarity=0.395 Sum_probs=36.0
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 300 LFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 300 ~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
++..+++..|+..|.+++...+.. ....+.+++.++...+.+..|+..+..++...
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDD--------------DAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCccc--------------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 444555555555555555544331 24456778888888888888888888777655
No 297
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=65.16 E-value=18 Score=40.70 Aligned_cols=60 Identities=18% Similarity=0.138 Sum_probs=54.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+|--+.+.+++..|+..++.|++..|.+ ..++.-++.+|...|+|..|++.+++|..++
T Consensus 567 ~rG~yyLea~n~h~aV~~fQsALR~dPkD---------------~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 567 QRGPYYLEAHNLHGAVCEFQSALRTDPKD---------------YNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred hccccccCccchhhHHHHHHHHhcCCchh---------------HHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 36777889999999999999999988766 6788999999999999999999999999988
No 298
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=64.13 E-value=1e+02 Score=35.05 Aligned_cols=62 Identities=11% Similarity=0.107 Sum_probs=50.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhC-HHHHHHHHHHHHhhc
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE-YKQAEKLCSKVLELD 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~-~~~ai~~~~~al~~d 369 (469)
....+.+....++|++|++.-+++++..+++ ..++.-++.++.-+++ .++|-+++-.|.++|
T Consensus 5 aLK~Ak~al~nk~YeealEqskkvLk~dpdN---------------YnA~vFLGvAl~sl~q~le~A~ehYv~AaKld 67 (1238)
T KOG1127|consen 5 ALKSAKDALRNKEYEEALEQSKKVLKEDPDN---------------YNAQVFLGVALWSLGQDLEKAAEHYVLAAKLD 67 (1238)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhcCCCc---------------chhhhHHHHHHHhccCCHHHHHHHHHHHHhcC
Confidence 3456778888999999999999999988766 3345567888888888 999998888888877
No 299
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.79 E-value=66 Score=24.46 Aligned_cols=56 Identities=18% Similarity=0.097 Sum_probs=37.2
Q ss_pred hHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhC-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 036950 343 LNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEID-PDNSLEAGWGVRMEYKLLKEKVREYNKKDVQ 411 (469)
Q Consensus 343 ~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~-p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~ 411 (469)
.-+|.-+=+.|+|.+|+.++..+| +.|..++..+ +++. .+..++.+..++..+...
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~ai----e~l~~~~~~~~~n~~---------~k~~ir~K~~eYl~RAE~ 66 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAA----QLLIYAEMAGTLNDS---------HLKTIQEKSNEYLDRAQA 66 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH----HHHHHHHHhcCCChH---------HHHHHHHHHHHHHHHHHH
Confidence 334555556799999999999999 4667766665 5444 344456666666655544
No 300
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=62.36 E-value=74 Score=24.92 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=25.2
Q ss_pred HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
......+|.+++..|+|++|++.+-.+++.+
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5567888999999999999999888888654
No 301
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=61.67 E-value=1.5 Score=43.91 Aligned_cols=56 Identities=16% Similarity=0.111 Sum_probs=47.5
Q ss_pred HHHHHhhhhhhhchhhhhhccccccC--CCcccccccccccchhhhhheecccccccccC
Q 036950 411 QFYGNIFAKINKLEQAKSASSMAKQE--PAPMVLIARHDTSIKLSMIAIESTRTVLISPL 468 (469)
Q Consensus 411 ~~~~~mf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (469)
+-|..+++....+.+++++|++++.. +||+.... +...+-.|.+|.-|-+||.||-
T Consensus 4 ~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g--~~~AeeKFKEI~eAYEVLsD~e 61 (371)
T COG0484 4 RDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPG--DKEAEEKFKEINEAYEVLSDPE 61 (371)
T ss_pred cchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC--CHHHHHHHHHHHHHHHHhCCHH
Confidence 45889999999999999999999877 89985443 5668889999999999999983
No 302
>PRK11906 transcriptional regulator; Provisional
Probab=61.55 E-value=30 Score=35.73 Aligned_cols=60 Identities=17% Similarity=0.056 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
-.|..+.-.++++.|+..+.+|+.+.|+. +..++-+|..+.-.|+.++|+...++|++++
T Consensus 343 ~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~---------------A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 343 IMGLITGLSGQAKVSHILFEQAKIHSTDI---------------ASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred HHHHHHHhhcchhhHHHHHHHHhhcCCcc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 46777778888999999999999988876 6677888888889999999999999999999
No 303
>PRK04841 transcriptional regulator MalT; Provisional
Probab=60.78 E-value=32 Score=39.13 Aligned_cols=67 Identities=9% Similarity=-0.030 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
...|..+...|++.+|...|.+++........ ....+.++..+|.+|.++|++.+|.....+|+++-
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~---------~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRL---------MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 35677788899999999999999987542211 11335667889999999999999999999999765
No 304
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=60.68 E-value=26 Score=33.30 Aligned_cols=46 Identities=13% Similarity=0.020 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 309 ASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 309 A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
|.++|.+|+.++|.. -..|+.+|..+...+++-.|+-+|-++|-..
T Consensus 1 A~~~Y~~A~~l~P~~---------------G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN---------------GNPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHHHH-TTB---------------SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHhCCCC---------------CCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 789999999999876 5578999999999999999999999999665
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=60.58 E-value=23 Score=32.37 Aligned_cols=49 Identities=22% Similarity=0.201 Sum_probs=41.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHH
Q 036950 300 LFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAE 359 (469)
Q Consensus 300 ~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai 359 (469)
+|-+.+-.+|+..|.+++.+...+..++ ..++.-+|..|.++++|+.|-
T Consensus 150 yY~krD~~Kt~~ll~~~L~l~~~~~~~n-----------~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 150 YYTKRDPEKTIQLLLRALELSNPDDNFN-----------PEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHccCHHHHHHHHHHHHHhcCCCCCCC-----------HHHHHHHHHHHHHhcchhhhh
Confidence 4556799999999999999988775655 567788899999999999884
No 306
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=59.59 E-value=81 Score=34.15 Aligned_cols=104 Identities=21% Similarity=0.139 Sum_probs=70.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCC-----HHHHH-HHH-------------HHHHHhHhHHHHHHHHhhCH
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFS-----DEEKQ-QAK-------------VLKITCNLNNAACKLKLKEY 355 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~-----~e~~~-~~~-------------~l~~~~~~N~a~~~~kl~~~ 355 (469)
..|.-+-+.++.+.|...|..+++.+|+...+. -||.. .+. +-...+|+-.-..-++.|+-
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 356666688899999999999999999875321 11211 000 01122444444455667888
Q ss_pred HHHHHHHHHHHhhc-----------------------------------------------------HHHHHHHHhhCCC
Q 036950 356 KQAEKLCSKVLELD-----------------------------------------------------KLDIKKALEIDPD 382 (469)
Q Consensus 356 ~~ai~~~~~al~~d-----------------------------------------------------~~~~~~al~l~p~ 382 (469)
+.|.....+||+-. ++.|.+|++++|+
T Consensus 770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 88888888888765 6778999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHH
Q 036950 383 NSLEAGWGVRMEYKLLKEKVR 403 (469)
Q Consensus 383 ~~~~~~~~~~~~l~~~~~~~~ 403 (469)
+. ++..-+-+......
T Consensus 850 ~G-----D~wa~fykfel~hG 865 (913)
T KOG0495|consen 850 NG-----DAWAWFYKFELRHG 865 (913)
T ss_pred cc-----hHHHHHHHHHHHhC
Confidence 98 87777766655543
No 307
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=59.49 E-value=17 Score=23.57 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=24.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIG 321 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~ 321 (469)
+-..|.-..-..+|.+|+.-|.+||.+..
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 34567777888999999999999998753
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=57.76 E-value=39 Score=32.61 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=49.5
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh-CHHHHHHHHHHHHhh
Q 036950 300 LFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK-EYKQAEKLCSKVLEL 368 (469)
Q Consensus 300 ~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~-~~~~ai~~~~~al~~ 368 (469)
..++|+++.|...|.|+-...... +++ .....+.+++|.+...++.+ +|+.|+...++|+++
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~---~~~----~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSL---DPD----MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcC---CcH----HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 357899999999999999887411 111 12345777899999999999 999999999999876
No 309
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.79 E-value=36 Score=37.53 Aligned_cols=34 Identities=18% Similarity=0.506 Sum_probs=29.0
Q ss_pred HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
.++-++.-|+-+|++|+|++|...|-++|.+++.
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 3445567899999999999999999999988753
No 310
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=56.66 E-value=28 Score=22.18 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=20.9
Q ss_pred cHHHHHHHHhcCCHHHHHHHHH--HHHHHh
Q 036950 293 KKEEGNVLFKAGKYERASKRYE--QAVNYI 320 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~--~al~~~ 320 (469)
+...|-.++.+|+|++|+..|+ -+..+.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld 33 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALD 33 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4567889999999999999955 555443
No 311
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=56.26 E-value=92 Score=34.78 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=14.1
Q ss_pred HHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCC
Q 036950 346 AACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPD 382 (469)
Q Consensus 346 a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~ 382 (469)
..||-.++++++|... ++++...+|+
T Consensus 84 ~~~y~d~~~~d~~~~~-----------Ye~~~~~~P~ 109 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHL-----------YERANQKYPS 109 (932)
T ss_pred HHHHHHHhhhhHHHHH-----------HHHHHhhCCc
Confidence 4455555555555444 4455566777
No 312
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.19 E-value=69 Score=31.78 Aligned_cols=84 Identities=19% Similarity=0.190 Sum_probs=58.7
Q ss_pred HHHHh-hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC---CC---------CHHH-HHHH----------HHHHHHh
Q 036950 286 KIEAA-GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDS---SF---------SDEE-KQQA----------KVLKITC 341 (469)
Q Consensus 286 ~~~~a-~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~---~~---------~~e~-~~~~----------~~l~~~~ 341 (469)
++-.+ +++....-.+|.+|++.+|...+.+.|+-.|.+- .+ ..+. ...+ .+.++-+
T Consensus 98 ~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv 177 (491)
T KOG2610|consen 98 KYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYV 177 (491)
T ss_pred HHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHH
Confidence 33344 5566778889999999999999999998776541 00 0111 1111 1233344
Q ss_pred HhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 342 NLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 342 ~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+.=.|.|+...|-|++|.+.++++|+++
T Consensus 178 ~GmyaFgL~E~g~y~dAEk~A~ralqiN 205 (491)
T KOG2610|consen 178 HGMYAFGLEECGIYDDAEKQADRALQIN 205 (491)
T ss_pred HHHHHhhHHHhccchhHHHHHHhhccCC
Confidence 4456999999999999999999999998
No 313
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=55.33 E-value=53 Score=36.23 Aligned_cols=105 Identities=10% Similarity=-0.041 Sum_probs=62.0
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHh--cCC------------CCCCHHHHHHHHHHHH--------HhHhHHHHHHH
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYI--GYD------------SSFSDEEKQQAKVLKI--------TCNLNNAACKL 350 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~--~~~------------~~~~~e~~~~~~~l~~--------~~~~N~a~~~~ 350 (469)
+-.....|.+.|++++|+..|.+.+..- |+. ....++-...++.+.. ..|+-+..+|.
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 3457788888999999999998876521 100 0111222223333322 25666778888
Q ss_pred HhhCHHHHHHHHHHHHhh-c--------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950 351 KLKEYKQAEKLCSKVLEL-D--------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV 402 (469)
Q Consensus 351 kl~~~~~ai~~~~~al~~-d--------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 402 (469)
+.|++++|.+..+++--. + ...++++++++|++. .....+..+..+.
T Consensus 474 r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~-----~~y~~L~~~y~~~ 541 (697)
T PLN03081 474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKL-----NNYVVLLNLYNSS 541 (697)
T ss_pred hcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCC-----cchHHHHHHHHhC
Confidence 888888888777654211 1 445667778888876 4444554444433
No 314
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=55.25 E-value=39 Score=33.98 Aligned_cols=58 Identities=21% Similarity=0.159 Sum_probs=49.7
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHH
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVL 366 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al 366 (469)
+...|.-|++.+.|.+|-..++.|+++-++ ..-|.=+|.++.++|+..+|-...+++|
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~~~~s----------------~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALKLRPS----------------ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcCCC----------------hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 456899999999999999999999987654 3345667999999999999999998887
No 315
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=55.12 E-value=39 Score=31.28 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=38.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
.|+..-...=+..|+..|.+|+..... +....++ ..+.+=+|..+.++|++++|+..+.+++.
T Consensus 131 ~~~~~~E~~fl~~Al~~y~~a~~~e~~-~~~~~~~--------~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 131 LGDEENEKRFLRKALEFYEEAYENEDF-PIEGMDE--------ATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhCcC-CCCCchH--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 333333333456677777777654332 1111111 23445579999999999999999999884
No 316
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=55.01 E-value=90 Score=23.56 Aligned_cols=52 Identities=23% Similarity=0.219 Sum_probs=36.0
Q ss_pred HHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 036950 345 NAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKD 409 (469)
Q Consensus 345 ~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e 409 (469)
.|.-.-+.|+|++|+..+..+| +.|..+++-+++.. ....++.+..++..+.
T Consensus 12 ~Av~~D~~g~y~eA~~lY~~al----e~~~~~~k~e~~~~---------~k~~lr~k~~eyl~RA 63 (75)
T cd02684 12 QAVKKDQRGDAAAALSLYCSAL----QYFVPALHYETDAQ---------RKEALRQKVLQYVSRA 63 (75)
T ss_pred HHHHHHHhccHHHHHHHHHHHH----HHHHHHHhhCCCHH---------HHHHHHHHHHHHHHHH
Confidence 3444555799999999999998 57777777776654 3445666666665554
No 317
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.89 E-value=1.1e+02 Score=32.87 Aligned_cols=75 Identities=21% Similarity=0.119 Sum_probs=52.0
Q ss_pred hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC----CCCCHHHHHH-HHHHHHHhHhHHH-HHHHHhhCHHHHHHHHHH
Q 036950 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD----SSFSDEEKQQ-AKVLKITCNLNNA-ACKLKLKEYKQAEKLCSK 364 (469)
Q Consensus 291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~----~~~~~e~~~~-~~~l~~~~~~N~a-~~~~kl~~~~~ai~~~~~ 364 (469)
.+++..|+...+++++..|-+++.+|-++-.-. ...+.+-... ...-...-.+|.| .||+.+|++++|++....
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 467889999999999999999999998654311 1222222222 2333344567876 699999999999876655
Q ss_pred H
Q 036950 365 V 365 (469)
Q Consensus 365 a 365 (469)
.
T Consensus 747 t 747 (794)
T KOG0276|consen 747 T 747 (794)
T ss_pred c
Confidence 4
No 318
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=53.44 E-value=63 Score=26.52 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=22.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYD 323 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~ 323 (469)
.+..+|++|++-+|++.-+..+..-..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~ 29 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGED 29 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCC
Confidence 4678999999999999998888755443
No 319
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=51.70 E-value=21 Score=20.80 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=23.3
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
.|+++-.+|.+.+++++|...+++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 477888999999999999999887664
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=51.60 E-value=81 Score=22.06 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYD 323 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~ 323 (469)
-.+..+++.|+|..|.+.-..+|+.-|.+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 45677899999999999999999987754
No 321
>PF15469 Sec5: Exocyst complex component Sec5
Probab=49.32 E-value=78 Score=28.28 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=22.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCC
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYD 323 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~ 323 (469)
.=..+.++|+|..|+..|.+|-.++...
T Consensus 92 ~L~~~i~~~dy~~~i~dY~kak~l~~~~ 119 (182)
T PF15469_consen 92 NLRECIKKGDYDQAINDYKKAKSLFEKY 119 (182)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 3345568999999999999999887643
No 322
>PLN03218 maturation of RBCL 1; Provisional
Probab=48.88 E-value=1.2e+02 Score=35.32 Aligned_cols=29 Identities=10% Similarity=-0.023 Sum_probs=19.3
Q ss_pred HhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 340 TCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 340 ~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
..|+.+..+|.+.|++++|+..+++..+.
T Consensus 720 vtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 720 STMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 45666677777777777777777766543
No 323
>PLN03218 maturation of RBCL 1; Provisional
Probab=48.84 E-value=1e+02 Score=35.97 Aligned_cols=74 Identities=9% Similarity=-0.005 Sum_probs=40.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhc-CCCC--------------CC-HHHHHHHHHHH-------HHhHhHHHHHHHH
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIG-YDSS--------------FS-DEEKQQAKVLK-------ITCNLNNAACKLK 351 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~-~~~~--------------~~-~e~~~~~~~l~-------~~~~~N~a~~~~k 351 (469)
..-+.+.+.|++++|...|.+....-. -.++ .. ++-.+.++.+. ...|+.+..+|.+
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 356778888888888888877764210 0010 00 01111111111 2456666667777
Q ss_pred hhCHHHHHHHHHHHHhh
Q 036950 352 LKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 352 l~~~~~ai~~~~~al~~ 368 (469)
.|++++|+..+++..+.
T Consensus 627 ~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKK 643 (1060)
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 77777777777666654
No 324
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=47.65 E-value=59 Score=26.70 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=38.6
Q ss_pred cccCCChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 277 ESWDMNTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 277 ~~~~l~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
..+..+...-+..|..+..+|..+++.|+.+.|.-.|.+.+.++..
T Consensus 25 ~~~~~~l~~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~k 70 (115)
T PF08969_consen 25 FDKNIPLKRYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVEK 70 (115)
T ss_dssp GSTTS-HHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3456677778899999999999999999999999999999998843
No 325
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=46.09 E-value=27 Score=34.03 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=47.3
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHH
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLD 372 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~ 372 (469)
+--.+..+...|+|.+|.....+|+...+.+ ..++.|++.|...+|+..++...+
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~~~---------------~d~LaNliv~~~~~gk~~~~~~~~---------- 258 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDPND---------------PDTLANLIVCSLHLGKPTEAAERY---------- 258 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH---------------HHHHHHHHHHHHHTT-TCHHHHHH----------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhccCC---------------HHHHHHHHHHHHHhCCChhHHHHH----------
Confidence 4468899999999999999999998654432 447789999999999985554422
Q ss_pred HHHHHhhCCCCC
Q 036950 373 IKKALEIDPDNS 384 (469)
Q Consensus 373 ~~~al~l~p~~~ 384 (469)
+......+|++.
T Consensus 259 l~qL~~~~p~h~ 270 (290)
T PF04733_consen 259 LSQLKQSNPNHP 270 (290)
T ss_dssp HHHCHHHTTTSH
T ss_pred HHHHHHhCCCCh
Confidence 233345678776
No 326
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.96 E-value=92 Score=35.52 Aligned_cols=55 Identities=24% Similarity=0.246 Sum_probs=44.8
Q ss_pred hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 292 KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 292 ~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.+..-|..||..+.|+.|.-.|+..-. |.-+|.+..++|+|+.|+..+++|=...
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~~vSN-----------------------~a~La~TLV~LgeyQ~AVD~aRKAns~k 1250 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSNVSN-----------------------FAKLASTLVYLGEYQGAVDAARKANSTK 1250 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHHHhhh-----------------------HHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 345689999999999999888865443 4567999999999999999999887655
No 327
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=44.46 E-value=1.6e+02 Score=28.57 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=52.0
Q ss_pred HhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 289 AAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 289 ~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
....+......+...++++.++...++-+...|++ -..|.-+-..|++.|+...|+..|.+.-+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~---------------E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYD---------------EPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccc---------------hHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 44556677888888999999999999999888776 45667778889999999999999987654
No 328
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=44.16 E-value=45 Score=19.87 Aligned_cols=27 Identities=15% Similarity=-0.042 Sum_probs=22.6
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
.|+.+..++.+.|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577888999999999999988877553
No 329
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=43.82 E-value=83 Score=29.80 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHhHhHHHHHHHHh-hCHHHHHHHHHHHHh
Q 036950 306 YERASKRYEQAVNYIGY-DSSFSDEEKQQAKVLKITCNLNNAACKLKL-KEYKQAEKLCSKVLE 367 (469)
Q Consensus 306 ~~~A~~~Y~~al~~~~~-~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl-~~~~~ai~~~~~al~ 367 (469)
-+.|...|+.|+.+... .+. ..+++..+.+|.+..|+.. ++.++|+..+.+|+.
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~p--------t~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPP--------THPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCC--------CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45889999999988653 222 2567788899999888875 888888888877663
No 330
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=43.38 E-value=38 Score=37.36 Aligned_cols=27 Identities=7% Similarity=-0.121 Sum_probs=18.5
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
.|.-++.+|.+.|+|++|.+..+...+
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456666777777777777777666554
No 331
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=40.79 E-value=2.6e+02 Score=31.49 Aligned_cols=64 Identities=16% Similarity=0.034 Sum_probs=54.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.|.....+++.+.|.+.-+.++..++..... .++.++++++.+++-.|+|.+|......+.++.
T Consensus 464 ~a~val~~~~~e~a~~lar~al~~L~~~~~~----------~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 464 RAQVALNRGDPEEAEDLARLALVQLPEAAYR----------SRIVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcccccch----------hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 4666778899999999999999998865332 358899999999999999999999999998874
No 332
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=39.82 E-value=2.2e+02 Score=27.35 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=45.0
Q ss_pred HHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc-----------------------HHHHHHHHhhCCCCC
Q 036950 335 KVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD-----------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 335 ~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d-----------------------~~~~~~al~l~p~~~ 384 (469)
......+..|+=..|+..++|+.|..+.++.|.++ ++|+...++..|++.
T Consensus 177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 45667788999999999999999999999999997 789999999999987
No 333
>PLN03077 Protein ECB2; Provisional
Probab=39.78 E-value=1.5e+02 Score=33.66 Aligned_cols=53 Identities=11% Similarity=0.118 Sum_probs=41.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 298 NVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 298 n~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+.|.|.|++++|...|... ..+ ...|+.+..+|.+.|++++|+..+++.++..
T Consensus 532 ~~y~k~G~~~~A~~~f~~~----~~d---------------~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g 584 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH----EKD---------------VVSWNILLTGYVAHGKGSMAVELFNRMVESG 584 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc----CCC---------------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 5566778888888777664 111 5678889999999999999999999988643
No 334
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=39.04 E-value=3.5e+02 Score=25.77 Aligned_cols=93 Identities=20% Similarity=0.179 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCC--------------------HH------------------------
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFS--------------------DE------------------------ 329 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~--------------------~e------------------------ 329 (469)
.+.+-.+||.++|..|+..-.+-+++.|..++.+ +.
T Consensus 75 l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~d 154 (254)
T COG4105 75 LDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPD 154 (254)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhh
Confidence 4678899999999999998888888776553321 00
Q ss_pred ---HHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950 330 ---EKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV 402 (469)
Q Consensus 330 ---~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 402 (469)
....++...+..-...|.-|++.|.|-.|+...+.++ +--|+.. .++..|..+.+..
T Consensus 155 A~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~-----------e~y~~t~-----~~~eaL~~l~eaY 214 (254)
T COG4105 155 AKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVL-----------ENYPDTS-----AVREALARLEEAY 214 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH-----------hcccccc-----chHHHHHHHHHHH
Confidence 0112222333334455777888899999988888777 4455555 6666666665543
No 335
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.00 E-value=1.4e+02 Score=30.23 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=51.0
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh--CHHHHHHHHHHHHh
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK--EYKQAEKLCSKVLE 367 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~--~~~~ai~~~~~al~ 367 (469)
+.....++..+|+.++|..|.+.++..+.-++.. . . ...+.++|.+|..=. +|.+|.+..+..+.
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~------~-----~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGR------E-----E--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCch------h-----h--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4455678889999999999999999988753321 1 1 456788888888754 68899999998886
Q ss_pred h
Q 036950 368 L 368 (469)
Q Consensus 368 ~ 368 (469)
.
T Consensus 198 ~ 198 (379)
T PF09670_consen 198 R 198 (379)
T ss_pred H
Confidence 4
No 336
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=38.80 E-value=1.4e+02 Score=25.54 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVN 318 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~ 318 (469)
..+..+...+++..++..+..++.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~ 87 (291)
T COG0457 64 LLALALLKLGRLEEALELLEKALE 87 (291)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 444445555555555555555544
No 337
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=38.59 E-value=57 Score=19.25 Aligned_cols=27 Identities=19% Similarity=0.046 Sum_probs=22.2
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
.|+.+-.+|.+.+++++|+..+.+..+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 356677889999999999999887654
No 338
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=37.48 E-value=1.9e+02 Score=30.23 Aligned_cols=68 Identities=21% Similarity=0.286 Sum_probs=55.5
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc------------
Q 036950 302 KAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD------------ 369 (469)
Q Consensus 302 k~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d------------ 369 (469)
.++++++|...|.+||...... +++++--|-|-+|.++-+.|.+..++|+.+-
T Consensus 85 sq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred hHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4677888888888888765433 7889999999999999999999999998765
Q ss_pred -----------HHHHHHHHhhCCCCC
Q 036950 370 -----------KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 -----------~~~~~~al~l~p~~~ 384 (469)
.+-|++=++..|+..
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHH
Confidence 566778888888866
No 339
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=36.76 E-value=2.7e+02 Score=29.19 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=53.5
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc------------
Q 036950 302 KAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD------------ 369 (469)
Q Consensus 302 k~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d------------ 369 (469)
-..+...+...|+.+|+++|.- .++ .+++++=-|.--++..+...|....-.||-..
T Consensus 378 e~ed~ertr~vyq~~l~lIPHk-kFt----------FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPHK-KFT----------FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIEL 446 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCcc-cch----------HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 4678889999999999988853 111 24444444555555555555555555555444
Q ss_pred ----------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950 370 ----------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE 404 (469)
Q Consensus 370 ----------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~ 404 (469)
..-+++-|+..|.|- .+......++..+..
T Consensus 447 ElqL~efDRcRkLYEkfle~~Pe~c-----~~W~kyaElE~~Lgd 486 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSPENC-----YAWSKYAELETSLGD 486 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcChHhh-----HHHHHHHHHHHHhhh
Confidence 233555566777777 666666666555543
No 340
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=36.54 E-value=1.9e+02 Score=22.10 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=26.2
Q ss_pred HhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhC
Q 036950 342 NLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEID 380 (469)
Q Consensus 342 ~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~ 380 (469)
+.|.|+++=..|+.+.|+.++.+++ ..+.+++.+.
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi----~~l~eg~ai~ 45 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGL----RELEEGIAVP 45 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHH----HHHHHHcCCC
Confidence 3556666666788999999999998 4677777664
No 341
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=36.07 E-value=99 Score=23.41 Aligned_cols=40 Identities=23% Similarity=0.389 Sum_probs=33.8
Q ss_pred ChHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 036950 282 NTQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIG 321 (469)
Q Consensus 282 ~~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~ 321 (469)
..++-++.|..+.+.|.-++++|++..|+.++.=|-.++.
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa~GwLD 66 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYAHGWLD 66 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999999988776653
No 342
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=34.53 E-value=3.3e+02 Score=24.19 Aligned_cols=64 Identities=17% Similarity=0.009 Sum_probs=45.4
Q ss_pred HHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----------HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950 335 KVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD----------KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE 404 (469)
Q Consensus 335 ~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d----------~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~ 404 (469)
++-....+.++|.=|.+.|+++.|++.+.++.+.. +.-++-++... +.. .+...+.+++..+..
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~-d~~-----~v~~~i~ka~~~~~~ 105 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG-DWS-----HVEKYIEKAESLIEK 105 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC-CHH-----HHHHHHHHHHHHHhc
Confidence 33445678899999999999999999999988776 33344444332 333 667777777776665
No 343
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=34.31 E-value=55 Score=23.70 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=18.4
Q ss_pred chhHHHHHhccccCcEEEEEEcCC
Q 036950 219 IDGLDRAVKTMKKGEVALVTIEPE 242 (469)
Q Consensus 219 ~~gle~~L~~m~~Ge~~~~~i~~~ 242 (469)
-+-+..|+..|+.||++.+++.+.
T Consensus 34 D~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 34 DAELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp -HHHHHHHTT-BTT-EEEEEETTS
T ss_pred CHHHHHHHHHhhcCceeEEEEecC
Confidence 367889999999999999998764
No 344
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=34.15 E-value=3.2e+02 Score=26.61 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-HhcCCCCC-CHHHHHH----------HHHHHHHhHhHHHHHHHHhhCHHHHH--
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVN-YIGYDSSF-SDEEKQQ----------AKVLKITCNLNNAACKLKLKEYKQAE-- 359 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~-~~~~~~~~-~~e~~~~----------~~~l~~~~~~N~a~~~~kl~~~~~ai-- 359 (469)
.+.++-++..|+..+|+......+. .+...... ....... .......-....|.|++.+++|....
T Consensus 188 ~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~ 267 (352)
T PF02259_consen 188 LEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYS 267 (352)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcc
Confidence 3566777777788888888777777 33221000 0000000 00001111233467777777777776
Q ss_pred ----HHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHH
Q 036950 360 ----KLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKV 402 (469)
Q Consensus 360 ----~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~ 402 (469)
...+.+ ...|+.|.+++|+.. .+...+......+
T Consensus 268 ~~~~~~~~~~----~~~~~~a~~~~~~~~-----k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 268 KLSSESSDEI----LKYYKEATKLDPSWE-----KAWHSWALFNDKL 305 (352)
T ss_pred ccccccHHHH----HHHHHHHHHhChhHH-----HHHHHHHHHHHHH
Confidence 333333 367777778888777 4444444443333
No 345
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=33.72 E-value=1.4e+02 Score=25.73 Aligned_cols=50 Identities=24% Similarity=0.248 Sum_probs=36.7
Q ss_pred HhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q 036950 342 NLNNAACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNK 407 (469)
Q Consensus 342 ~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~ 407 (469)
...+|...+..|+|.-|++.++.++ ..+|+|. +++..+..+-..+..+.+
T Consensus 73 vl~~A~~~~~~gd~~wA~~L~d~l~-----------~adp~n~-----~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 73 VLERAQAALAAGDYQWAAELLDHLV-----------FADPDNE-----EARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH-----------HH-TT-H-----HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-----------HcCCCcH-----HHHHHHHHHHHHHHHhcc
Confidence 4677888888999999999888776 6899999 888888887776665543
No 346
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=33.65 E-value=3.8e+02 Score=26.46 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=24.4
Q ss_pred hhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCC
Q 036950 352 LKEYKQAEKLCSKVLELDKLDIKKALEIDPDNS 384 (469)
Q Consensus 352 l~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~ 384 (469)
.++|++|+..+..+| +.|..+++-+.++.
T Consensus 23 a~nY~eA~~lY~~al----eYF~~~lKYE~~~~ 51 (439)
T KOG0739|consen 23 AKNYEEALRLYQNAL----EYFLHALKYEANNK 51 (439)
T ss_pred hhchHHHHHHHHHHH----HHHHHHHHhhhcCh
Confidence 488999999999988 57888888887776
No 347
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=33.34 E-value=5e+02 Score=25.89 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHH-----HHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 306 YERASKRYEQAVNYIGYDSS--FSDEEKQQAKVLK-----ITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 306 ~~~A~~~Y~~al~~~~~~~~--~~~e~~~~~~~l~-----~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
-.++...|+.|...+..... .-+.+|...-..+ +..++..|..+...++|-++|..++.|+.
T Consensus 215 a~qv~~~Y~~a~~~l~~~~~~~~~~~~W~~~~~~K~~~f~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~ 283 (346)
T cd09240 215 AAQAADYYGDAFKQCQREDVRSLLPKDWIPVLAGKQAYFHALAEYHQSLVAKAQKKFGEEIARLQHALE 283 (346)
T ss_pred HHHHHHHHHHHHHHHhcchhccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHH
Confidence 55667889999988865431 2234454333332 33444455555555678888888777764
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=32.90 E-value=4.1e+02 Score=29.95 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=47.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHHH-HHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 296 EGNVLFKAGKYERASKRYEQAVNYIGYDS-----SFSDEEKQQAKVL-KITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 296 ~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~-----~~~~e~~~~~~~l-~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
.|.-+=..|+.+.|+..|+.|-+++.... ...++-....++- ...+.+-+|.-|-..|++.+|++.+.+|-
T Consensus 918 WgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq--- 994 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ--- 994 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---
Confidence 45555578999999999999999886431 1111111111111 01112234444455667788888888764
Q ss_pred HHHHHHHHhhCCCCC
Q 036950 370 KLDIKKALEIDPDNS 384 (469)
Q Consensus 370 ~~~~~~al~l~p~~~ 384 (469)
.|..|+.+...|.
T Consensus 995 --afsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 995 --AFSNAIRLCKEND 1007 (1416)
T ss_pred --HHHHHHHHHHhcC
Confidence 5555555554443
No 349
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.85 E-value=1.3e+02 Score=30.18 Aligned_cols=38 Identities=11% Similarity=0.102 Sum_probs=33.8
Q ss_pred HHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 285 EKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 285 e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
.+-..+.++...|+.+++.++|..|...|+.|..++..
T Consensus 36 ~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 36 QKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred hHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999998753
No 350
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=31.79 E-value=4.4e+02 Score=30.34 Aligned_cols=112 Identities=14% Similarity=0.030 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCC------------------H-HHHH----HHHHHH-----HHhHhHHH
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFS------------------D-EEKQ----QAKVLK-----ITCNLNNA 346 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~------------------~-e~~~----~~~~l~-----~~~~~N~a 346 (469)
.-..++...+.|++|+..|++...-+|.....- + +... +...+- ..=|+--|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKA 559 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHH
Confidence 455778888999999999999888776542211 0 1111 111111 01266778
Q ss_pred HHHHHhhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhh
Q 036950 347 ACKLKLKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKK-DVQFYGNIFAKINK 422 (469)
Q Consensus 347 ~~~~kl~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~-e~~~~~~mf~~~~~ 422 (469)
++|-.+++|++-++++.- |++--|+.. .+-.....+--++-+.-.+ .+..|.=|+-...-
T Consensus 560 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLL-----------ALKRYSQHP-----EISRLRDHLVYRLHESLYKHRREALVFMLLALWI 620 (932)
T ss_pred HHHHHhhhHHHHHHHHHH-----------HHHhcCCCC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888887765554 457788888 6666666665555444433 33445666655443
No 351
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=30.60 E-value=1.4e+02 Score=28.11 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 308 RASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 308 ~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
..+...++|+..+.... ...+...+...+|.-|+++|+|++|+..++.++..
T Consensus 156 ~iI~lL~~A~~~f~~~~---------~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~ 207 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYG---------QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS 207 (247)
T ss_pred HHHHHHHHHHHHHHHhc---------cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45566666666554221 13455667788999999999999999999998644
No 352
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=30.43 E-value=1.5e+02 Score=31.85 Aligned_cols=62 Identities=23% Similarity=0.120 Sum_probs=52.6
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+-+.+|.+.+.+-..+|-....++|.++... ...++-++.+|+-+++.+.|++.+..|+.++
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~se---------------pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSE---------------PLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccC---------------chHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 4478899999998999999999999887432 2346778889999999999999999999998
No 353
>PHA02122 hypothetical protein
Probab=30.35 E-value=84 Score=22.09 Aligned_cols=20 Identities=45% Similarity=0.718 Sum_probs=16.7
Q ss_pred CCCCEEEEEEEEEecCCcEEe
Q 036950 68 KDLDEVFVKYEVRLEDGTLIS 88 (469)
Q Consensus 68 ~~gd~V~i~y~~~~~~G~~~~ 88 (469)
..||.|.++|.... +|+.|-
T Consensus 39 ~~gd~v~vn~e~~~-ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV-NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE-CCEEEE
Confidence 46999999999986 888764
No 354
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=30.30 E-value=1.2e+02 Score=25.29 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=31.5
Q ss_pred hHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 283 TQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 283 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
.+++-..-.+--..|..+...|++.+|+.++-+||..++.
T Consensus 56 ~~~~e~~Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 56 PEEMERFFLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3444455556668999999999999999999999998864
No 355
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=30.10 E-value=14 Score=36.37 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=43.9
Q ss_pred HHHHHhhhhhhhchhhhhhccccccC--CCcccccccccccchhhhhheecccccccccC
Q 036950 411 QFYGNIFAKINKLEQAKSASSMAKQE--PAPMVLIARHDTSIKLSMIAIESTRTVLISPL 468 (469)
Q Consensus 411 ~~~~~mf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (469)
+-|.++++..+++.+.+++++++|.. .||+- ...+..+.-.|..|.+|=+||-||-
T Consensus 16 rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDk--Npddp~A~e~F~~in~AYEVLsDpe 73 (336)
T KOG0713|consen 16 RDFYELLGVPKNASDQEIKKAYRKLALKYHPDK--NPDDPNANEKFKEINAAYEVLSDPE 73 (336)
T ss_pred CCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC--CCCCHHHHHHHHHHHHHHHHhcCHH
Confidence 34888999999999999999999877 78882 2333445567788889999999983
No 356
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=29.78 E-value=1.6e+02 Score=28.29 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=36.8
Q ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 300 LFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 300 ~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
+...++...|.+.|+++++.++.+ ..+++.-...++++++.+.|...+++++..
T Consensus 46 ~~~~~d~~~A~~Ife~glk~f~~~---------------~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 46 YYCNKDPKRARKIFERGLKKFPSD---------------PDFWLEYLDFLIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHTCS-HHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT
T ss_pred HHhCCCHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh
Confidence 333677888999999999998865 233344445567788888888888887754
No 357
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=29.04 E-value=78 Score=27.66 Aligned_cols=70 Identities=19% Similarity=0.184 Sum_probs=45.3
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYD-SSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~-~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
........|.+++.|+.+.|...-+-+-.-+... ....=. ...-..++|..++..|+|.+|-.....|++
T Consensus 75 ~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~--------~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 75 KKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLA--------QTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHH--------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHH--------hhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4556788999999999999987665544322110 000000 133456899999999999999888877763
No 358
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.97 E-value=2.4e+02 Score=28.81 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=25.1
Q ss_pred hHhHHHHHHHHhhCHHHHHHHHHHHHhh
Q 036950 341 CNLNNAACKLKLKEYKQAEKLCSKVLEL 368 (469)
Q Consensus 341 ~~~N~a~~~~kl~~~~~ai~~~~~al~~ 368 (469)
+..|.++||-.+++|+.|+.++++.|.+
T Consensus 24 ~~V~~gl~~dE~~~~e~a~~~Ye~gl~~ 51 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWENALAMYEKGLNL 51 (560)
T ss_pred HHHHhhcchhhhcCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999964
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=28.67 E-value=2.5e+02 Score=27.46 Aligned_cols=75 Identities=17% Similarity=0.120 Sum_probs=50.9
Q ss_pred cccccCCChHHHHHHhh--hcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHh
Q 036950 275 EKESWDMNTQEKIEAAG--KKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKL 352 (469)
Q Consensus 275 ~~~~~~l~~~e~~~~a~--~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl 352 (469)
...+|.-+..++++..- -+-..+..|...|.|.+|+...++++.+.+-+ ...+.-+-+.+..+
T Consensus 262 ~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~---------------e~~nk~lm~~la~~ 326 (361)
T COG3947 262 ADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLS---------------EQDNKGLMASLATL 326 (361)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhh---------------hHHHHHHHHHHHHh
Confidence 34567766667765443 22346677889999999999999999875532 33444455667777
Q ss_pred hCHHHHHHHHHH
Q 036950 353 KEYKQAEKLCSK 364 (469)
Q Consensus 353 ~~~~~ai~~~~~ 364 (469)
|+--+|+.++++
T Consensus 327 gD~is~~khyer 338 (361)
T COG3947 327 GDEISAIKHYER 338 (361)
T ss_pred ccchhhhhHHHH
Confidence 887777766654
No 360
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=27.82 E-value=4.8e+02 Score=23.92 Aligned_cols=94 Identities=13% Similarity=0.086 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc----
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD---- 369 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d---- 369 (469)
.-.+|..|..+++..|........++-+.....+ -++-.|.+|.-+|.|.+|...++.++...
T Consensus 128 LglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd-------------~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 128 LGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD-------------GHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-------------chHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 4567888888888888887777776655433322 22445888899999999999888888765
Q ss_pred -HHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHH
Q 036950 370 -KLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREY 405 (469)
Q Consensus 370 -~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~ 405 (469)
.-.+-..|.....+. +++..+..+-+.+++.
T Consensus 195 ar~~Y~e~La~qgr~~-----ea~aq~~~v~d~~~r~ 226 (251)
T COG4700 195 ARIYYAEMLAKQGRLR-----EANAQYVAVVDTAKRS 226 (251)
T ss_pred HHHHHHHHHHHhcchh-----HHHHHHHHHHHHHHhc
Confidence 333333444444444 5555555555444433
No 361
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=27.75 E-value=1.4e+02 Score=28.66 Aligned_cols=60 Identities=17% Similarity=0.027 Sum_probs=48.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+.=+.+...+++..|.+.-.+.+.+.|.++. -.--+++.|.+++-+.-|+.+.+..++..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~---------------eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPY---------------EIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChh---------------hccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 3446777899999999999999998887631 23457999999999999999999877654
No 362
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=26.99 E-value=7.5e+02 Score=25.89 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=52.1
Q ss_pred hhcHHHHHHHHhcCCHHHHH-----HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHH
Q 036950 291 GKKKEEGNVLFKAGKYERAS-----KRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKV 365 (469)
Q Consensus 291 ~~~k~~Gn~~fk~~~~~~A~-----~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~a 365 (469)
.-+|+.+-.--+.++ .+|- .+|++.+..++ ++....+.-....|.-|-.+.+. .+-..|++.+..|
T Consensus 268 ~VmkEW~~ae~qaKn-PKAekqalnqhFQ~~v~sLE-------ee~a~erqqlvetH~~RV~AmlN-drrR~Ale~ylaA 338 (615)
T KOG3540|consen 268 KVMKEWEEAETQAKN-PKAEKQALNQHFQKTVSSLE-------EEAARERQQLVETHEARVEAMLN-DRRRDALENYLAA 338 (615)
T ss_pred HHHHHHHHHHhcccC-chhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 344566666666666 4443 45666666553 33333333335556656555554 3457888888888
Q ss_pred Hhhc-------------------------HHHHHHHHhhCCCCC
Q 036950 366 LELD-------------------------KLDIKKALEIDPDNS 384 (469)
Q Consensus 366 l~~d-------------------------~~~~~~al~l~p~~~ 384 (469)
|+-+ +..|+.++..||.-.
T Consensus 339 Lqa~pprp~~Vl~aLkrYvRAEqKdr~HTlrhyqHv~~vDpkkA 382 (615)
T KOG3540|consen 339 LQADPPRPHRVLQALKRYVRAEQKDRMHTLRHYQHVLAVDPKKA 382 (615)
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence 8887 566788888888754
No 363
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=26.85 E-value=6.8e+02 Score=26.19 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=42.9
Q ss_pred hhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHH
Q 036950 290 AGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCS 363 (469)
Q Consensus 290 a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~ 363 (469)
.....+.+.-+|..|+|.+|.-.-.-..+..|+ ..+|-=+++|.+..++|.+|..+..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaPS----------------~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS----------------PQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc----------------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344567788899999999887665555555552 3445557999999999999988665
No 364
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.30 E-value=6.1e+02 Score=24.61 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=36.0
Q ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 302 KAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 302 k~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
+..+.++|+..|++.+.+-..-..+. ++.+ --+--.++++++|++-...+.+.|.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWG------FKAL-----KQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWG------FKAL-----KQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhH------HHHH-----HHHHHHHhccccHHHHHHHHHHHHH
Confidence 34578899999999998754332222 2222 2234456678888888888887774
No 365
>PF13041 PPR_2: PPR repeat family
Probab=25.02 E-value=1.4e+02 Score=19.88 Aligned_cols=31 Identities=13% Similarity=0.071 Sum_probs=25.4
Q ss_pred HHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 339 ITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 339 ~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
+..|+-+-.+|.+.|++++|++.+++..+..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 3467777889999999999999999887543
No 366
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=24.69 E-value=2e+02 Score=30.08 Aligned_cols=60 Identities=25% Similarity=0.200 Sum_probs=43.8
Q ss_pred cHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCH-------HHHHHHHHHH
Q 036950 293 KKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEY-------KQAEKLCSKV 365 (469)
Q Consensus 293 ~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~-------~~ai~~~~~a 365 (469)
+-+.|-.++-..+|.+|...|.+.++.-.+. ....++=.|.|+..+++. ++|.....+|
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS--------------ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLLKESKWS--------------KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHHhccccH--------------HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 4588899999999999999999988744332 244455569999999998 5555555544
Q ss_pred H
Q 036950 366 L 366 (469)
Q Consensus 366 l 366 (469)
-
T Consensus 374 p 374 (468)
T PF10300_consen 374 P 374 (468)
T ss_pred H
Confidence 4
No 367
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.19 E-value=8e+02 Score=25.27 Aligned_cols=107 Identities=18% Similarity=0.090 Sum_probs=61.2
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhC------HHHHHHH
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKE------YKQAEKL 361 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~------~~~ai~~ 361 (469)
+.+++.++..+.++|.|.=..|++ |-++...++.+ .+-+...++|+........+ --.|+..
T Consensus 254 qeie~~~~~~r~~~k~g~K~iA~~-ylr~rk~~eK~-----------~er~~~~l~~l~~vl~~Id~s~~nkvvl~Ayks 321 (439)
T KOG2911|consen 254 QEIEKSKEKLRQALKEGKKQIAIT-YLRARKLLEKD-----------LERKVSSLNNLETVLSQIDNSQTNKVVLQAYKS 321 (439)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHhh-----------HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 567788899999999999988876 44555544321 12223444455444333221 1122222
Q ss_pred HHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036950 362 CSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVREYNKKDVQFYGNIFA 418 (469)
Q Consensus 362 ~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~~~~~e~~~~~~mf~ 418 (469)
- -..++..+.-.-... .+...|..++.-+..+++.+..+-.....
T Consensus 322 G-------s~alK~il~~~~s~e-----kVed~Ldev~et~d~~~EV~~~la~~~~~ 366 (439)
T KOG2911|consen 322 G-------SEALKAILAQGGSTE-----KVEDVLDEVNETLDRQEEVEDALASYNVN 366 (439)
T ss_pred h-------HHHHHHHHhccCChh-----hHHHHHHHHHHHHhhHHHHHHHHhcCCCC
Confidence 2 234444444333333 47788888888888888888765443333
No 368
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=24.10 E-value=3e+02 Score=23.61 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=26.0
Q ss_pred hhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Q 036950 291 GKKKEEGNVLFKAGKYERASKRYEQAVNYIGY 322 (469)
Q Consensus 291 ~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~ 322 (469)
.++.+.+.+.+.+|+|+-|+..-..++...+.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~ 102 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPD 102 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 45678999999999999999999999987654
No 369
>PRK00809 hypothetical protein; Provisional
Probab=24.04 E-value=2.5e+02 Score=24.19 Aligned_cols=26 Identities=15% Similarity=0.368 Sum_probs=22.1
Q ss_pred ccchhHHHHHhccccCcEEEEEEcCC
Q 036950 217 QVIDGLDRAVKTMKKGEVALVTIEPE 242 (469)
Q Consensus 217 ~v~~gle~~L~~m~~Ge~~~~~i~~~ 242 (469)
+++.|=..-|+.|++|+.+.|+.+..
T Consensus 23 g~~~~~rn~lr~Mk~GD~v~fYhs~~ 48 (144)
T PRK00809 23 GVPERYKNTIEKVKPGDKLIIYVSQE 48 (144)
T ss_pred ecchhhhhHHhhCCCCCEEEEEECCc
Confidence 56667778888999999999999875
No 370
>PF12854 PPR_1: PPR repeat
Probab=23.90 E-value=1.5e+02 Score=18.25 Aligned_cols=26 Identities=12% Similarity=-0.049 Sum_probs=21.9
Q ss_pred HHhHhHHHHHHHHhhCHHHHHHHHHH
Q 036950 339 ITCNLNNAACKLKLKEYKQAEKLCSK 364 (469)
Q Consensus 339 ~~~~~N~a~~~~kl~~~~~ai~~~~~ 364 (469)
...|+-+-.+|.|.|+.++|+...++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45678888999999999999987765
No 371
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=23.68 E-value=3e+02 Score=22.18 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=31.3
Q ss_pred HHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 036950 284 QEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYI 320 (469)
Q Consensus 284 ~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~ 320 (469)
.-+.+++.+...+|-..+-.|+|..|.+.-.++-+..
T Consensus 53 ~rr~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~ 89 (108)
T PF07219_consen 53 RRRRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLS 89 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3456788888899999999999999999999997653
No 372
>PRK14296 chaperone protein DnaJ; Provisional
Probab=23.38 E-value=21 Score=36.20 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=38.7
Q ss_pred HHHHhhhhhhhchhhhhhccccccC--CCcccccccccccchhhhhheecccccccccC
Q 036950 412 FYGNIFAKINKLEQAKSASSMAKQE--PAPMVLIARHDTSIKLSMIAIESTRTVLISPL 468 (469)
Q Consensus 412 ~~~~mf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (469)
-|.++++........+.++++++.. +||+... +......|-.|..|-+||.||.
T Consensus 5 dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~---~~~a~~~F~~i~~AyevLsD~~ 60 (372)
T PRK14296 5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNK---SPDAHDKMVEINEAADVLLDKD 60 (372)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCC---CchHHHHHHHHHHHHHHhcCHH
Confidence 3666777777777777777777654 7888632 2345667888999999999873
No 373
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.05 E-value=5e+02 Score=25.11 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhcHHHHH
Q 036950 295 EEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELDKLDIK 374 (469)
Q Consensus 295 ~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d~~~~~ 374 (469)
-+++.+...++|++|...-..||.-...+ ...+.|+-.|-+.+|.-.++....- .
T Consensus 212 G~Av~~l~~~~~eeAe~lL~eaL~kd~~d---------------petL~Nliv~a~~~Gkd~~~~~r~l----------~ 266 (299)
T KOG3081|consen 212 GQAVCHLQLGRYEEAESLLEEALDKDAKD---------------PETLANLIVLALHLGKDAEVTERNL----------S 266 (299)
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHhCCChHHHHHHH----------H
Confidence 46788999999999999999999866655 4467899999999999877766443 3
Q ss_pred HHHhhCCCCC
Q 036950 375 KALEIDPDNS 384 (469)
Q Consensus 375 ~al~l~p~~~ 384 (469)
.....+|+..
T Consensus 267 QLk~~~p~h~ 276 (299)
T KOG3081|consen 267 QLKLSHPEHP 276 (299)
T ss_pred HHHhcCCcch
Confidence 4456677766
No 374
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=22.99 E-value=68 Score=33.42 Aligned_cols=95 Identities=15% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhH-hHHHHHHHHhhCHHHHHHHHHHHHh-hc-------
Q 036950 299 VLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCN-LNNAACKLKLKEYKQAEKLCSKVLE-LD------- 369 (469)
Q Consensus 299 ~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~-~N~a~~~~kl~~~~~ai~~~~~al~-~d------- 369 (469)
.+|-+.++.-+..-|.+|.+++.....-...--...-++..-++ +|++-.++.++.|.-++.++.+||+ .+
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Q ss_pred ---------------------------------HHHHHHHHhhCCCCCCcchHHHHHHHHHH
Q 036950 370 ---------------------------------KLDIKKALEIDPDNSLEAGWGVRMEYKLL 398 (469)
Q Consensus 370 ---------------------------------~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 398 (469)
.++|.++...-..|. .++-.+..+
T Consensus 322 ~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP-----rlWLRlAEc 378 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP-----RLWLRLAEC 378 (696)
T ss_pred CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc-----HHHHHHHHH
No 375
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.37 E-value=3.7e+02 Score=27.31 Aligned_cols=61 Identities=13% Similarity=0.002 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhh--CHHHHHHHHHH
Q 036950 294 KEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLK--EYKQAEKLCSK 364 (469)
Q Consensus 294 k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~--~~~~ai~~~~~ 364 (469)
......+|++++|..|...|..++..... .+. .-...+|-++|.||..=. +|++|.+..++
T Consensus 134 ~~~~r~l~n~~dy~aA~~~~~~L~~r~l~-----~~~-----~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 134 QGYARRAINAFDYLFAHARLETLLRRLLS-----AVN-----HTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcccC-----hhh-----hhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 35677999999999999999999975322 111 223567788899998865 68899998884
No 376
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=22.30 E-value=2.6e+02 Score=27.55 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=55.6
Q ss_pred HhcCCHHHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHhhc
Q 036950 301 FKAGKYERASKRYEQAVNYIGYDSS---FSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLELD 369 (469)
Q Consensus 301 fk~~~~~~A~~~Y~~al~~~~~~~~---~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~~d 369 (469)
|..-.|......|.++|..+..... .............+.++.+++.-....|..+.|+...+-.|+++
T Consensus 113 ~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 113 FASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred hccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 5566789999999999998864422 22344556677778889999999999999999999999999988
No 377
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=21.88 E-value=2.1e+02 Score=24.81 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=33.4
Q ss_pred ChHHHHHHhhhcHHHHHHHHhcC-CHHHHHHHHHHHHHHhcC
Q 036950 282 NTQEKIEAAGKKKEEGNVLFKAG-KYERASKRYEQAVNYIGY 322 (469)
Q Consensus 282 ~~~e~~~~a~~~k~~Gn~~fk~~-~~~~A~~~Y~~al~~~~~ 322 (469)
+.+++-..-..--..|-.++..| ++.+|+.++-+||..++.
T Consensus 82 d~~e~E~~Fl~eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 82 DPSEKEAFFLQEVQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 34555555666678999999999 999999999999998864
No 378
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=21.42 E-value=96 Score=23.33 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=18.2
Q ss_pred chhHHHHHhcccCCcEEEEEEcC
Q 036950 103 CAALAKAVKTMKKGEKVLLTVKP 125 (469)
Q Consensus 103 ~~gle~aL~gmk~Ge~~~~~ip~ 125 (469)
..-+-.||.|.++||.+.+.+|.
T Consensus 43 ~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 43 DSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TSHHHHHHTT-BTT-EEEEEETT
T ss_pred cCHHHHHhcCCCCCCEEEEEeCC
Confidence 45688999999999999999874
No 379
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.27 E-value=9.9e+02 Score=25.27 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=54.2
Q ss_pred hHHHHHHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHH
Q 036950 283 TQEKIEAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLC 362 (469)
Q Consensus 283 ~~e~~~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~ 362 (469)
.......+.-+.-.|--.|++++|.+|.+.-.+.++.-+ .++.-.+..... .=++...+-+|+..++.+-.
T Consensus 438 ~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkman------aed~~rL~a~~L---vLLs~v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 438 LSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMAN------AEDLNRLTACSL---VLLSHVFLSLGNTVESRNMV 508 (629)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc------hhhHHHHHHHHH---HHHHHHHHHhcchHHHHhcc
Confidence 334455666778899999999999999999999998642 123223333333 33466667788888888877
Q ss_pred HHHHhhc
Q 036950 363 SKVLELD 369 (469)
Q Consensus 363 ~~al~~d 369 (469)
.-++++-
T Consensus 509 rpamqlA 515 (629)
T KOG2300|consen 509 RPAMQLA 515 (629)
T ss_pred chHHHHH
Confidence 7777665
No 380
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=20.97 E-value=6.7e+02 Score=23.53 Aligned_cols=53 Identities=11% Similarity=0.202 Sum_probs=34.4
Q ss_pred HHHHHHhHhHHHHHHHH---------hhCHHHHHHHHHHHHhhcHHHHHHHHhhCCCCCCcchHHHHHHHHHHHHHHHH
Q 036950 335 KVLKITCNLNNAACKLK---------LKEYKQAEKLCSKVLELDKLDIKKALEIDPDNSLEAGWGVRMEYKLLKEKVRE 404 (469)
Q Consensus 335 ~~l~~~~~~N~a~~~~k---------l~~~~~ai~~~~~al~~d~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~~ 404 (469)
..+++++|-=++..+++ .++...|+.++ ++|+.++|+-. +++.++++.++++.
T Consensus 165 d~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L-----------~rA~~l~~k~G------VK~~i~~l~~~lr~ 226 (230)
T PHA02537 165 DEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALL-----------QRAFQLNDKCG------VKKDIERLERRLKA 226 (230)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHH-----------HHHHHhCCCCC------hHHHHHHHHHHHhh
Confidence 44566777666766654 23455665554 45557887754 78888888887764
No 381
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=20.85 E-value=1.2e+02 Score=17.42 Aligned_cols=20 Identities=40% Similarity=0.524 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHHHhcCC
Q 036950 304 GKYERASKRYEQAVNYIGYD 323 (469)
Q Consensus 304 ~~~~~A~~~Y~~al~~~~~~ 323 (469)
|+++.|...|++++..++..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~ 20 (33)
T smart00386 1 GDIERARKIYERALEKFPKS 20 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCC
Confidence 46788999999999987744
No 382
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=20.61 E-value=5.6e+02 Score=23.34 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=21.0
Q ss_pred HHHhhCHHHHHHHHHHHHhhc----HHHHHHHHhh
Q 036950 349 KLKLKEYKQAEKLCSKVLELD----KLDIKKALEI 379 (469)
Q Consensus 349 ~~kl~~~~~ai~~~~~al~~d----~~~~~~al~l 379 (469)
+.-+++-+.|+..+-+|.+++ -.++.+..++
T Consensus 178 ~~~~kDMdka~qfa~kACel~~~~aCAN~SrMykl 212 (248)
T KOG4014|consen 178 GSLSKDMDKALQFAIKACELDIPQACANVSRMYKL 212 (248)
T ss_pred hhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHc
Confidence 333466778888888888887 4556666665
No 383
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=20.39 E-value=8.3e+02 Score=24.04 Aligned_cols=62 Identities=15% Similarity=-0.035 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCC----CHHHHHHHHH-----HHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 306 YERASKRYEQAVNYIGYDSSF----SDEEKQQAKV-----LKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 306 ~~~A~~~Y~~al~~~~~~~~~----~~e~~~~~~~-----l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
-.+|...|+.|...+...... -+..+...-. ..+..|+-.|..+...+++.+|+..++.|+.
T Consensus 209 a~~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~ 279 (345)
T cd09034 209 ACEAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALE 279 (345)
T ss_pred HHHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 457889999999988754321 2233332222 2333455555555555688889888888875
No 384
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=20.32 E-value=1.5e+02 Score=34.60 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=58.9
Q ss_pred HHhhhcHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhHhHHHHHHHHhhCHHHHHHHHHHHHh
Q 036950 288 EAAGKKKEEGNVLFKAGKYERASKRYEQAVNYIGYDSSFSDEEKQQAKVLKITCNLNNAACKLKLKEYKQAEKLCSKVLE 367 (469)
Q Consensus 288 ~~a~~~k~~Gn~~fk~~~~~~A~~~Y~~al~~~~~~~~~~~e~~~~~~~l~~~~~~N~a~~~~kl~~~~~ai~~~~~al~ 367 (469)
..+....+.|.+....+.|..|.+ -.+++.++... ...+..-...+|.-+|..+.+++++++|+..|.++.-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v-------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV-------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh-------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence 456677789999999999999988 77777776533 2233445578889999999999999999999999886
Q ss_pred hc
Q 036950 368 LD 369 (469)
Q Consensus 368 ~d 369 (469)
+.
T Consensus 1002 i~ 1003 (1236)
T KOG1839|consen 1002 IS 1003 (1236)
T ss_pred ee
Confidence 65
Done!