BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036952
(311 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NRG|A Chain A, Structure And Properties Of Recombinant Human
Pyridoxine-5'-Phosphate Oxidase
Length = 261
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 130/237 (54%), Gaps = 30/237 (12%)
Query: 104 IGKAPSVDISALRENYISPE--FLEEQVES-DPINQFRKWFDDAIAA-GLREPNAMALST 159
G++ ++D+ +R++Y F E + S DP+ QF WF++A+ + E NAM L+T
Sbjct: 26 CGRSAAMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLAT 85
Query: 160 VGKDGKP--------------FWYSTSTGQVKSWCKRWLPVAVETSIFTYQSTTVRVEGS 205
+DGKP F + T+ K P A + + VRVEG
Sbjct: 86 CTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGP 145
Query: 206 VEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPE 265
V+K+ +EE+E YFHSRP+ SQIGA+VS QSSVIP R L ++ +ELE+ + D +PKP+
Sbjct: 146 VKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQDQE-VPKPK 204
Query: 266 FWGGYRLKPELFEFWQGQTSRLHDRLQY-----------SPQEINGKRVWKINRLCP 311
WGGY L P++ EFWQGQT+RLHDR+ + P G+ W RL P
Sbjct: 205 SWGGYVLYPQVMEFWQGQTNRLHDRIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP 261
>pdb|3HY8|A Chain A, Crystal Structure Of Human Pyridoxine 5'-Phosphate Oxidase
R229w Mutant
Length = 261
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 129/237 (54%), Gaps = 30/237 (12%)
Query: 104 IGKAPSVDISALRENYISPE--FLEEQVES-DPINQFRKWFDDAIAA-GLREPNAMALST 159
G++ ++D+ +R++Y F E + S DP+ QF WF++A+ + E NAM L+T
Sbjct: 26 CGRSAAMDLGPMRKSYRGDREAFEETHLTSLDPVKQFAAWFEEAVQCPDIGEANAMCLAT 85
Query: 160 VGKDGKP--------------FWYSTSTGQVKSWCKRWLPVAVETSIFTYQSTTVRVEGS 205
+DGKP F + T+ K P A + + VRVEG
Sbjct: 86 CTRDGKPSARMLLLKGFGKDGFRFFTNFESRKGKELDSNPFASLVFYWEPLNRQVRVEGP 145
Query: 206 VEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPE 265
V+K+ +EE+E YFHSRP+ SQIGA+VS QSSVIP R L ++ +ELE+ + D +PKP+
Sbjct: 146 VKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLRKKNEELEQLYQD-QEVPKPK 204
Query: 266 FWGGYRLKPELFEFWQGQTSRLHDRLQY-----------SPQEINGKRVWKINRLCP 311
WGGY L P++ EFWQGQT+RLHD + + P G+ W RL P
Sbjct: 205 SWGGYVLYPQVMEFWQGQTNRLHDWIVFRRGLPTGDSPLGPMTHRGEEDWLYERLAP 261
>pdb|1G76|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase Complexed With Pyridoxal
5'-Phosphate At 2.0 A Resolution
pdb|1G79|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase Complexed With Pyridoxal
5'-Phosphate At 2.0 A Resolution
pdb|1WV4|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase In Tetragonal Crystal Form
pdb|1WV4|B Chain B, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase In Tetragonal Crystal Form
Length = 218
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 79/216 (36%), Positives = 110/216 (50%), Gaps = 23/216 (10%)
Query: 112 ISALRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPFW--- 168
I+ LR Y + +DP+ F +W A A L +P AM ++TV + G+P+
Sbjct: 10 IAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAMVVATVDEHGQPYQRIV 69
Query: 169 -----------YSTSTGQVKSWCKRWLPVAVETSIFTYQST--TVRVEGSVEKVSDEESE 215
+ T+ G K+ P + +F + + V V G E++S E
Sbjct: 70 LLKHYDEKGMVFYTNLGSRKAHQIENNPRV--SLLFPWHTLERQVMVIGKAERLSTLEVM 127
Query: 216 QYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPE 275
+YFHSRPR SQIGA VSKQSS I R +L ++ EL++KF +P P FWGG+R+ E
Sbjct: 128 KYFHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQGE-VPLPSFWGGFRVSLE 186
Query: 276 LFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 311
EFWQG RLHDR Y + WKI+RL P
Sbjct: 187 QIEFWQGGEHRLHDRFLYQRE----NDAWKIDRLAP 218
>pdb|1G77|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5`-Phosphate Oxidase Complexed With Pyridoxal
5'-Phosphate At 2.0 A Resolution
pdb|1G78|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase Complexed With Pyridoxal
5'-Phosphate At 2.0 A Resolution
pdb|1JNW|A Chain A, Active Site Structure Of E. Coli Pyridoxine 5'-Phosphate
Oxidase
Length = 218
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 105/214 (49%), Gaps = 19/214 (8%)
Query: 112 ISALRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPFW--- 168
I+ LR Y + +DP+ F +W A A L +P A ++TV + G+P+
Sbjct: 10 IAHLRREYTKGGLRRRDLPADPLTLFERWLSQACEAKLADPTAXVVATVDEHGQPYQRIV 69
Query: 169 -----------YSTSTGQVKSWCKRWLPVAVETSIFTYQSTTVRVEGSVEKVSDEESEQY 217
+ T+ G K+ P + V V G E++S E +Y
Sbjct: 70 LLKHYDEKGXVFYTNLGSRKAHQIENNPRVSLLFPWHTLERQVXVIGKAERLSTLEVXKY 129
Query: 218 FHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELF 277
FHSRPR SQIGA VSKQSS I R +L ++ EL++KF +P P FWGG+R+ E
Sbjct: 130 FHSRPRDSQIGAWVSKQSSRISARGILESKFLELKQKFQQ-GEVPLPSFWGGFRVSLEQI 188
Query: 278 EFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 311
EFWQG RLHDR Y + WKI+RL P
Sbjct: 189 EFWQGGEHRLHDRFLYQRE----NDAWKIDRLAP 218
>pdb|1DNL|A Chain A, X-Ray Structure Of Escherichia Coli Pyridoxine
5'-Phosphate Oxidase Complexed With Fmn At 1.8 Angstrom
Resolution
Length = 199
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 99/195 (50%), Gaps = 19/195 (9%)
Query: 131 SDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPFW--------------YSTSTGQV 176
+DP+ F +W A A L +P A ++TV + G+P+ + T+ G
Sbjct: 10 ADPLTLFERWLSQACEAKLADPTAXVVATVDEHGQPYQRIVLLKHYDEKGXVFYTNLGSR 69
Query: 177 KSWCKRWLPVAVETSIFTYQSTTVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSS 236
K+ P + V V G E++S E +YFHSRPR SQIGA VSKQSS
Sbjct: 70 KAHQIENNPRVSLLFPWHTLERQVXVIGKAERLSTLEVXKYFHSRPRDSQIGAWVSKQSS 129
Query: 237 VIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQ 296
I R +L ++ EL++KF +P P FWGG+R+ E EFWQG RLHDR Y +
Sbjct: 130 RISARGILESKFLELKQKFQQ-GEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRE 188
Query: 297 EINGKRVWKINRLCP 311
WKI+RL P
Sbjct: 189 ----NDAWKIDRLAP 199
>pdb|2A2J|A Chain A, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate
Oxidase (Rv2607) From Mycobacterium Tuberculosis
pdb|2A2J|B Chain B, Crystal Structure Of A Putative Pyridoxine 5'-Phosphate
Oxidase (Rv2607) From Mycobacterium Tuberculosis
Length = 246
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 99/192 (51%), Gaps = 23/192 (11%)
Query: 134 INQFRKWFDDAIAAGLREPNAMALSTVGKDGKPFWYS--------------TSTGQVKSW 179
+ R+W +DA AG+ EPNAM L+TV DGKP S TS K
Sbjct: 62 LTLLRRWLNDAQRAGVSEPNAMVLATVA-DGKPVTRSVLCKILDESGVAFFTSYTSAKGE 120
Query: 180 CKRWLPVAVETSIFTYQSTTVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIP 239
P A T + V+G V KVS EE Y+ RPRG+Q+GA S+QS +
Sbjct: 121 QLAVTPYASATFPWYQLGRQAHVQGPVSKVSTEEIFTYWSMRPRGAQLGAWASQQSRPVG 180
Query: 240 GRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEIN 299
R L Q E+ +F+D IP P WGGYR+ PE+ EFWQG+ +R+H+R++ + N
Sbjct: 181 SRAQLDNQLAEVTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIRVA----N 236
Query: 300 GKRVWKINRLCP 311
G ++ RL P
Sbjct: 237 G----RLERLQP 244
>pdb|1CI0|A Chain A, Pnp Oxidase From Saccharomyces Cerevisiae
pdb|1CI0|B Chain B, Pnp Oxidase From Saccharomyces Cerevisiae
Length = 228
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 105/204 (51%), Gaps = 21/204 (10%)
Query: 126 EEQVESDPINQFRKWFDDAIAAGLRE--PNAMALSTV----GK-----------DGKPFW 168
E+Q+ DPI+ F KWF++A RE P A+ S+ G+ D + F
Sbjct: 28 EKQLTDDPIDLFTKWFNEA-KEDPRETLPEAITFSSAELPSGRVSSRILLFKELDHRGFT 86
Query: 169 -YSTSTGQVKSWCKRWLPVAVETSIFTYQSTTVRVEGSVEKVSDEESEQYFHSRPRGSQI 227
YS K+ P A + VRVEG E V+ E SE+YF +RPRGS+I
Sbjct: 87 IYSNWGTSRKAHDIATNPNAAIVFFWKDLQRQVRVEGITEHVNRETSERYFKTRPRGSKI 146
Query: 228 GAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRL 287
GA S+QS VI R L + ++ E+F D IP P++WGG R+ P EFWQG+ SRL
Sbjct: 147 GAWASRQSDVIKNREELDELTQKNTERFKDAEDIPCPDYWGGLRIVPLEIEFWQGRPSRL 206
Query: 288 HDRLQYSPQEINGKRVWKINRLCP 311
HDR Y + N WK+ RL P
Sbjct: 207 HDRFVYRRKTENDP--WKVVRLAP 228
>pdb|2O8N|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|3RNO|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Nadp.
pdb|3RO7|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymine.
pdb|3ROE|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|B Chain B, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|C Chain C, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|D Chain D, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|E Chain E, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROE|F Chain F, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine
pdb|3ROG|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Thymidine 3'-Monophosphate
pdb|3ROX|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Theophylline
pdb|3ROZ|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein In Complex With Nicotinamide
Length = 265
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Query: 29 IVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKSSGPHHFLGGRFVPPVIADKY 88
I S+DIPSGW VE+G+ GI+PD+L+SLTAPK A +G +H+LGGRFVPP + KY
Sbjct: 185 IASIDIPSGWDVEKGN--PSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKY 242
Query: 89 KLRLPPYPGTSMCVRI 104
+L LP YP T R+
Sbjct: 243 QLNLPSYPDTECVYRL 258
>pdb|2DG2|A Chain A, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|B Chain B, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|C Chain C, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|D Chain D, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|E Chain E, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
pdb|2DG2|F Chain F, Crystal Structure Of Mouse Apolipoprotein A-I Binding
Protein
Length = 265
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Query: 29 IVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKSSGPHHFLGGRFVPPVIADKY 88
I S+DIPSGW VE+G+ GI+PD+L+SLTAPK A +G +H+LGGRFVPP + KY
Sbjct: 185 IASIDIPSGWDVEKGN--PSGIQPDLLISLTAPKKSATHFTGRYHYLGGRFVPPALEKKY 242
Query: 89 KLRLPPYPGTSMCVRI 104
+L LP YP T R+
Sbjct: 243 QLNLPSYPDTECVYRL 258
>pdb|1T9M|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas
Aeruginosa
pdb|1T9M|B Chain B, X-Ray Crystal Structure Of Phzg From Pseudomonas
Aeruginosa
Length = 214
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 84/190 (44%), Gaps = 19/190 (10%)
Query: 122 PEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKP--------------F 167
PEF E ++P+ R W + A G+REP A+AL+TV G+P
Sbjct: 20 PEF--EAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGV 77
Query: 168 WYSTSTGQVKSWCKRWLPVAVETSIFTYQSTTVRVEGSVEKVSDEESEQYFHSRPRGSQI 227
++T K P A + S + + G E++ DE ++ + SRP +
Sbjct: 78 VFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHP 137
Query: 228 GAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRL 287
+I S+QS + H L + + L E +P+P + + L E EFW T RL
Sbjct: 138 MSIASRQSETLADIHALRAEARRLAETDGP---LPRPPGYCLFELCLESVEFWGNGTERL 194
Query: 288 HDRLQYSPQE 297
H+RL+Y E
Sbjct: 195 HERLRYDRDE 204
>pdb|1TY9|A Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas
Fluorescens
pdb|1TY9|B Chain B, X-Ray Crystal Structure Of Phzg From Pseudomonas
Fluorescens
Length = 222
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 88/204 (43%), Gaps = 23/204 (11%)
Query: 122 PEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKP--------------F 167
PE+ + + +DP++ W + A G+REP A+AL+T G+P
Sbjct: 28 PEY--QTLPADPMSVLHNWLERARRVGIREPRALALATADSQGRPSTRIVVISEISDAGV 85
Query: 168 WYSTSTGQVKSWCKRWLPVAVETSIFTYQSTTVRVEGSVEKVSDEESEQYFHSRPRGSQI 227
+ST G K P A + S + + G ++ + +++ + RP +
Sbjct: 86 VFSTHAGSQKGRELLHNPWASGVLYWRETSQQIILNGQAVRLPNAKADDAWLKRPYATHP 145
Query: 228 GAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRL 287
+ VS+QS + + ++L E +P+PE + + L+ E EFW RL
Sbjct: 146 MSSVSRQSEELQDVQAMRNAARQLAELQGP---LPRPEGYCVFELRLESLEFWGNGQERL 202
Query: 288 HDRLQYSPQEINGKRVWKINRLCP 311
H+RL+Y + W + RL P
Sbjct: 203 HERLRYDRSDTG----WNVRRLQP 222
>pdb|1JZT|A Chain A, Crystal Structure Of Yeast Ynu0, Ynl200c
pdb|1JZT|B Chain B, Crystal Structure Of Yeast Ynu0, Ynl200c
Length = 246
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 9/104 (8%)
Query: 3 RPPFDDLIKRLLCLHGYDQTRQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPK 62
R PF +++ L + Q IVSVD+P+GW V++G I I P +LVSLT PK
Sbjct: 150 REPFKGIVEELCKV-------QNIIPIVSVDVPTGWDVDKGPISQPSINPAVLVSLTVPK 202
Query: 63 LCAK--KSSGPHHFLGGRFVPPVIADKYKLRLPPYPGTSMCVRI 104
C+ + + H++GGRF+P A+K+ Y T +++
Sbjct: 203 PCSSHIRENQTTHYVGGRFIPRDFANKFGFEPFGYESTDQILKL 246
>pdb|2GRE|A Chain A, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|B Chain B, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|C Chain C, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|D Chain D, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|E Chain E, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|F Chain F, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|G Chain G, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|H Chain H, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|I Chain I, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|J Chain J, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|K Chain K, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|L Chain L, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|M Chain M, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|N Chain N, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|O Chain O, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|P Chain P, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
Length = 349
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Query: 40 VEEGDIGDEGIKPDMLVSLTAPKLCAKKSSGPHHF-LGGRFVPPVIAD--KYKLRLPPYP 96
V+ G +GD + VS+ CAK SSGP+H+ L V + +YK+ + PY
Sbjct: 240 VDXGALGDGQASDEYTVSI-----CAKDSSGPYHYALRKHLVELAKTNHIEYKVDIYPYY 294
Query: 97 GT--SMCVRIG 105
G+ S +R G
Sbjct: 295 GSDASAAIRAG 305
>pdb|2AX3|A Chain A, Crystal Structure Of A Putative Carbohydrate Kinase
(Tm0922) From Thermotoga Maritima Msb8 At 2.25 A
Resolution
Length = 502
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 28 VIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKL 63
V+VSVD+PSG G + +K D+ V+ PK+
Sbjct: 154 VVVSVDVPSGIDSNTGKVLRTAVKADLTVTFGVPKI 189
>pdb|3RS8|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Ribose
pdb|3RS9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P3-Di(Adenosine-5') Triphosphate
pdb|3RSF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P4-Di(Adenosine-5') Tetraphosphate
pdb|3RSQ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
pdb|3RSS|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
pdb|3RT7|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
Adp-Glucose
pdb|3RT9|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A
pdb|3RTA|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Acetyl
Coenzyme A
pdb|3RTC|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad And
Atp.
pdb|3RTD|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadh
And Adp.
pdb|3RTE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadp
And Atp.
pdb|3RTG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Coenzyme A And Atp
pdb|3RU3|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
And Atp.
pdb|3RRB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Amp
pdb|3RRE|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Adp
pdb|3RRF|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With Atp
pdb|3RRJ|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima In Complex With
P1,P5-Di(Adenosine-5') Pentaphosphate
pdb|3RSG|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nad.
pdb|3RTB|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With
Adenosine-3'-5'-Diphosphate
pdb|3RU2|A Chain A, Crystal Structure Of Tm0922, A Fusion Of A Domain Of
Unknown Function And AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Thermotoga Maritima Soaked With Nadph
Length = 502
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 28 VIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKL 63
V+VSVD+PSG G + +K D+ V+ PK+
Sbjct: 154 VVVSVDVPSGIDSNTGKVLRTAVKADLTVTFGVPKI 189
>pdb|3TIQ|A Chain A, Crystal Structure Of Staphylococcus Aureus Sasg G51-E-G52
Module
pdb|3TIQ|B Chain B, Crystal Structure Of Staphylococcus Aureus Sasg G51-E-G52
Module
Length = 214
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 96 PGTSMCVRIGKAPSVDISA------LRENYISPEFLEEQVESDPINQFRKWFDDAIAAGL 149
PGT R G+ I+ L IS +E++ DPIN+ ++ + IA G
Sbjct: 32 PGTEKVTREGQKGEKTITTPTLKNPLTGVIISKGEPKEEITKDPINELTEYGPETIAPGH 91
Query: 150 REPNAMALSTVGKD---GKPFWYSTSTGQV 176
R+ L T K+ GKP + TG V
Sbjct: 92 RDEFDPKLPTGEKEEVPGKPGIKNPETGDV 121
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
pdb|2XTI|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg
Length = 437
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 247 QYKELEEKFSDWSLIPKPEFW------------GGYRLKPELFEFWQGQTSRLHDRLQY 293
++ EL + F + + PKP +W GGY L E F W T+ + D Y
Sbjct: 370 KFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLY 428
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
pdb|2XGT|B Chain B, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed
With The Sulphamoyl Analogue Of Asparaginyl-Adenylate
Length = 435
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 12/59 (20%)
Query: 247 QYKELEEKFSDWSLIPKPEFW------------GGYRLKPELFEFWQGQTSRLHDRLQY 293
++ EL + F + + PKP +W GGY L E F W T+ + D Y
Sbjct: 368 KFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLY 426
>pdb|3GDE|A Chain A, The Closed Conformation Of Atp-Dependent Dna Ligase From
Archaeoglobus Fulgidus
Length = 558
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 125 LEEQVESDPINQFRKWFDDAIAAG 148
L +Q+ +D +++ RK +D+AI+AG
Sbjct: 373 LAKQIVTDSVDEVRKMYDEAISAG 396
>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R0D|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 168 WYSTSTGQVKSWCKRWLPVAVETSIFTYQSTTVRVEGSV---EKVSDEESE--------Q 216
W G+VK+W +RW + + ++ ++ TT + + E +S E E +
Sbjct: 218 WLLKLGGRVKTWKRRWF-ILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 276
Query: 217 YFHSRPRGSQIGAIVSKQSS-VIPGRHVLYQ 246
++ +G I A ++ V+ G HV+Y+
Sbjct: 277 LYNPSHKGQVIKACKTEADGRVVEGNHVVYR 307
>pdb|4AKL|A Chain A, Structure Of The Crimean-Congo Haemorrhagic Fever Virus
Nucleocapsid Protein
pdb|4AKL|B Chain B, Structure Of The Crimean-Congo Haemorrhagic Fever Virus
Nucleocapsid Protein
Length = 482
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 168 WYSTSTGQVKSWCKRWLPVAVET----SIFTYQSTTVR 201
W+ +TG +KSW + ++ + VE +F YQ ++
Sbjct: 95 WFEKNTGTIKSWDESYIELKVEVPKIEQLFNYQQAALK 132
>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
pdb|2R09|B Chain B, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase
Exchange Factor
Length = 347
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 168 WYSTSTGQVKSWCKRWLPVAVETSIFTYQSTTVRVEGSV---EKVSDEESE--------Q 216
W G+VK+W +RW + + ++ ++ TT + + E +S E E +
Sbjct: 218 WLLKLGGRVKTWKRRWF-ILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 276
Query: 217 YFHSRPRGSQIGAIVSKQSS-VIPGRHVLYQ 246
++ +G I A ++ V+ G HV+Y+
Sbjct: 277 LYNPSHKGQVIKACKTEADGRVVEGNHVVYR 307
>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
pdb|1FHW|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol(1,3,4,5,6)pentakisphosphate
Length = 129
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 168 WYSTSTGQVKSWCKRWLPVAVETSIFTYQSTTVRVEGSV---EKVSDEESE--------Q 216
W G+VK+W +RW + + ++ ++ TT + + E +S E E +
Sbjct: 8 WLLKLGGRVKTWKRRWF-ILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 66
Query: 217 YFHSRPRGSQIGAIVSKQSS-VIPGRHVLYQ 246
++ +G I A ++ V+ G HV+Y+
Sbjct: 67 LYNPSHKGQVIKACKTEADGRVVEGNHVVYR 97
>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
pdb|1FHX|B Chain B, Structure Of The Pleckstrin Homology Domain From Grp1 In
Complex With Inositol 1,3,4,5-Tetrakisphosphate
Length = 129
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 168 WYSTSTGQVKSWCKRWLPVAVETSIFTYQSTTVRVEGSV---EKVSDEESE--------Q 216
W G+VK+W +RW + + ++ ++ TT + + E +S E E +
Sbjct: 8 WLLKLGGRVKTWKRRWF-ILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 66
Query: 217 YFHSRPRGSQIGAIVSKQSS-VIPGRHVLYQ 246
++ +G I A ++ V+ G HV+Y+
Sbjct: 67 LYNPSHKGQVIKACKTEADGRVVEGNHVVYR 97
>pdb|1U27|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,3,4,5)p4
pdb|1U29|A Chain A, Triglycine Variant Of The Arno Pleckstrin Homology Domain
In Complex With Ins(1,4,5)p3
Length = 129
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 174 GQVKSWCKRWLPVAVETSIFTYQSTT-------VRVEG-SVEKVSDEESEQYFH---SRP 222
G+VK+W +RW + + ++ ++ TT + +E S+ +V D F
Sbjct: 23 GRVKTWKRRWF-ILTDNCLYYFEYTTDKEPRGIIPLENLSIREVDDPRKPNCFELYIPNN 81
Query: 223 RGSQIGAIVSKQSS-VIPGRHVLYQQYKELEEKFSDW 258
+G I A ++ V+ G H++Y+ +E+ +W
Sbjct: 82 KGQLIKACKTEADGRVVEGNHMVYRISAPTQEEKDEW 118
>pdb|1U2B|A Chain A, Triglycine Variant Of The Grp1 Pleckstrin Homology Domain
Unliganded
Length = 138
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 13/85 (15%)
Query: 174 GQVKSWCKRWLPVAVETSIFTYQSTTVRVEGSV---EKVSDEESE--------QYFHSRP 222
G+VK+W +RW + + ++ ++ TT + + E +S E E + ++
Sbjct: 27 GRVKTWKRRWF-ILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFELYNPSH 85
Query: 223 RGSQIGAIVSKQSS-VIPGRHVLYQ 246
+G I A ++ V+ G HV+Y+
Sbjct: 86 KGQVIKACKTEADGRVVEGNHVVYR 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,503,694
Number of Sequences: 62578
Number of extensions: 455163
Number of successful extensions: 868
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 29
length of query: 311
length of database: 14,973,337
effective HSP length: 99
effective length of query: 212
effective length of database: 8,778,115
effective search space: 1860960380
effective search space used: 1860960380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)