Query 036952
Match_columns 311
No_of_seqs 313 out of 2153
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:04:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02918 pyridoxine (pyridoxam 100.0 3.1E-89 6.8E-94 685.9 31.1 299 1-311 221-544 (544)
2 PLN03049 pyridoxine (pyridoxam 100.0 3.2E-84 6.9E-89 644.4 31.2 300 1-311 145-462 (462)
3 COG0259 PdxH Pyridoxamine-phos 100.0 2.6E-67 5.6E-72 463.4 20.1 192 111-311 4-214 (214)
4 KOG2586 Pyridoxamine-phosphate 100.0 1.1E-59 2.4E-64 413.4 16.3 203 103-311 5-228 (228)
5 TIGR00558 pdxH pyridoxamine-ph 100.0 1.3E-47 2.8E-52 348.6 22.0 195 108-311 5-217 (217)
6 PRK05679 pyridoxamine 5'-phosp 100.0 1.2E-44 2.7E-49 324.0 20.7 176 127-311 2-195 (195)
7 PLN03050 pyridoxine (pyridoxam 99.9 2.3E-23 5.1E-28 192.8 9.6 97 1-104 150-246 (246)
8 TIGR00197 yjeF_nterm yjeF N-te 99.7 2.8E-17 6.1E-22 148.4 7.8 69 1-80 130-198 (205)
9 PF10590 PNPOx_C: Pyridoxine 5 99.7 1.3E-16 2.9E-21 109.0 5.2 42 267-311 1-42 (42)
10 KOG2585 Uncharacterized conser 99.7 1.1E-16 2.3E-21 156.3 6.3 97 1-106 353-452 (453)
11 COG0062 Uncharacterized conser 99.6 1.7E-16 3.7E-21 142.9 6.4 66 1-76 135-200 (203)
12 PRK10565 putative carbohydrate 99.5 7.3E-15 1.6E-19 148.9 7.3 70 1-80 145-214 (508)
13 PF12766 Pyridox_oxase_2: Pyri 99.2 4.9E-11 1.1E-15 96.4 5.9 66 141-210 8-100 (100)
14 PF01243 Pyridox_oxidase: Pyri 99.1 8E-11 1.7E-15 90.6 5.2 59 151-213 11-89 (89)
15 PF03853 YjeF_N: YjeF-related 99.1 6.5E-11 1.4E-15 103.8 3.1 40 25-64 130-169 (169)
16 TIGR03618 Rv1155_F420 PPOX cla 99.1 1.1E-09 2.5E-14 88.8 9.7 54 156-213 1-74 (117)
17 TIGR03667 Rv3369 PPOX class pr 99.0 8.9E-10 1.9E-14 92.6 5.9 62 147-212 9-88 (130)
18 COG5135 Uncharacterized conser 98.9 3.8E-09 8.2E-14 93.9 6.4 160 143-311 12-245 (245)
19 COG3871 Uncharacterized stress 98.5 2.4E-07 5.2E-12 79.0 7.7 98 152-285 17-134 (145)
20 TIGR03668 Rv0121_F420 PPOX cla 98.4 1.7E-06 3.6E-11 74.1 8.6 98 149-280 9-140 (141)
21 TIGR03666 Rv2061_F420 PPOX cla 98.2 3.9E-06 8.4E-11 70.9 7.0 66 149-218 9-92 (132)
22 KOG4558 Uncharacterized conser 98.2 1.4E-05 3.1E-10 71.6 9.8 156 149-311 22-251 (251)
23 PRK03467 hypothetical protein; 97.8 0.00029 6.4E-09 60.6 10.9 68 134-213 7-96 (144)
24 PRK06733 hypothetical protein; 97.2 0.00077 1.7E-08 58.4 5.5 55 153-211 21-93 (151)
25 COG5015 Uncharacterized conser 96.5 0.0073 1.6E-07 50.4 6.1 57 154-215 13-86 (132)
26 PF12900 Pyridox_ox_2: Pyridox 96.5 0.017 3.7E-07 48.7 8.5 54 152-211 12-95 (143)
27 PF13883 Pyrid_oxidase_2: Pyri 95.7 0.061 1.3E-06 47.3 8.4 96 153-282 18-156 (170)
28 COG3467 Predicted flavin-nucle 95.3 0.058 1.3E-06 47.4 6.9 58 151-213 22-108 (166)
29 TIGR00026 hi_GC_TIGR00026 deaz 90.8 0.75 1.6E-05 37.9 6.1 59 154-220 9-88 (113)
30 COG3576 Predicted flavin-nucle 80.1 6.5 0.00014 34.8 6.8 57 152-211 41-118 (173)
31 PF04075 DUF385: Domain of unk 47.3 22 0.00047 30.0 3.3 58 154-219 27-105 (132)
32 PF04250 DUF429: Protein of un 40.9 30 0.00066 30.8 3.4 29 5-43 29-57 (209)
33 COG0748 HugZ Putative heme iro 35.5 7.6 0.00017 36.4 -1.4 47 142-192 84-144 (245)
34 KOG3374 Cellular repressor of 27.8 3E+02 0.0064 24.8 7.3 44 164-211 90-150 (210)
35 PF09631 Sen15: Sen15 protein; 26.1 1.5E+02 0.0033 23.5 4.9 35 133-168 54-88 (101)
36 COG4923 Predicted nuclease (RN 24.0 84 0.0018 28.8 3.2 29 4-40 37-65 (245)
37 PF14230 DUF4333: Domain of un 24.0 1.2E+02 0.0025 23.2 3.7 20 26-45 38-57 (80)
38 COG3787 Uncharacterized protei 23.5 1.7E+02 0.0038 25.0 4.8 91 167-296 42-139 (145)
39 PF10633 NPCBM_assoc: NPCBM-as 22.1 35 0.00075 25.5 0.4 13 28-40 24-36 (78)
No 1
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=100.00 E-value=3.1e-89 Score=685.86 Aligned_cols=299 Identities=76% Similarity=1.255 Sum_probs=282.7
Q ss_pred CCCchHHHHHHHH------HhccCCCCCCCCCCc-EEEEEcCCCCCCCCCCCCCCccccCeEEeccccccccccCCCCcc
Q 036952 1 TPRPPFDDLIKRL------LCLHGYDQTRQKRPV-IVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKSSGPHH 73 (311)
Q Consensus 1 ~lr~~~~~~i~~i------n~~~~~~~~~~~~~~-vvaiDiPSG~~~d~G~~~~~~i~ad~tit~~~pK~g~~~~~g~~~ 73 (311)
+|+++|+++|+.| |++ .+.+ |||||||||||+|+|.+.+.+|+||+||||++||.|+++++|++|
T Consensus 221 ~lr~~~~~lI~~i~~~~~~N~s--------~~~p~VVAVDIPSGldaDtG~v~g~aV~AD~TVTf~apK~Gl~~~~g~~h 292 (544)
T PLN02918 221 APRPPFDDLIRRLVSLQNYEQT--------LKHPVIVSVDIPSGWHVEEGDHEGGGIKPDMLVSLTAPKLCAKKFRGPHH 292 (544)
T ss_pred CCchHHHHHHHHHHhhhhcccc--------cCCCCEEEEECCCCCCcccCCcCCceecCCEEEECccCccccccCcchhh
Confidence 5899999999999 532 0345 999999999999999999999999999999999999999999889
Q ss_pred eeecEEeChhhHhhcCCCCCCCCCCcceeeeCCCCCCchhhhhhccCCCCcCcccCCCChHHHHHHHHHHHHHcCCCCCC
Q 036952 74 FLGGRFVPPVIADKYKLRLPPYPGTSMCVRIGKAPSVDISALRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPN 153 (311)
Q Consensus 74 ~~Gg~~iP~~~~~~~~~~~p~y~~~~~~v~l~~a~~~~~~~~r~~y~~~~~~~~~~~~dP~~~f~~Wl~~A~~~~~~~p~ 153 (311)
|+||||||+++.+||++.+|+|+|+++|++++....+|++++|++|....|++++++.||++||++||++|+++++.+|+
T Consensus 293 ~lgGrf~p~~l~~ky~l~~p~y~g~~M~Vrig~~~~~~~~~~r~~y~~~~l~~~~~~~dP~~~F~~W~~eA~~~~~~eP~ 372 (544)
T PLN02918 293 FLGGRFVPPSIVEKYKLHLPPYPGTSMCVRIGKPPSVDISALRENYISPELLEEQVETDPTDQFRKWFDEAVAAGLREPN 372 (544)
T ss_pred eecCccCCHHHHHHhCCCCCCCCCcccccccccccccCHHHHHhhccccCCChhhcCCCHHHHHHHHHHHHHhcCCCCCc
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred ceEEEeeCCCCce---------------EEEeCCCCccccccccccccCCceeE-eee--cCeeEEEEEEEEEeChHHHH
Q 036952 154 AMALSTVGKDGKP---------------FWYSTSTGQVKSWCKRWLPVAVETSI-FTY--QSTTVRVEGSVEKVSDEESE 215 (311)
Q Consensus 154 a~~LATv~~dG~P---------------~F~T~~~S~~K~~~~~eL~~NP~aal-f~w--~~rQVRv~G~a~~l~~~es~ 215 (311)
||+|||||.+|+| +||||++|+ |+ +||++||+||| ||| +.|||||+|+|+++++++++
T Consensus 373 Am~LATv~~~G~P~~RtVlLk~~d~~g~~F~Tn~~S~-K~---~el~~Np~aal~F~w~~l~rQVRi~G~v~~~~~~es~ 448 (544)
T PLN02918 373 AMALSTANKDGKPSSRMVLLKGVDKNGFVWYTNYESQ-KG---SDLSENPSAALLFYWEELNRQVRVEGSVQKVPESESE 448 (544)
T ss_pred cceEEeeCCCCCeeeEEEEEeEEcCCceEEEECCCCh-hH---HHHHhCCcEEEEeeeccccEEEEEEEEEEECCHHHHH
Confidence 9999999999999 999999999 99 99999999999 999 99999999999999999999
Q ss_pred HHHhcCCcccccceecCCCCCCCCChHHHHHHHHHHHhhccCCCCCCCCCCeeEEEEEceEEEEEeCCCCCCcceEEEee
Q 036952 216 QYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSP 295 (311)
Q Consensus 216 ~yf~~rp~~sqi~a~~s~qs~~i~~r~~l~~~~~~~~~~~~~~~~~p~p~~w~gy~l~P~~iEfwq~~~~r~H~R~~y~r 295 (311)
+||++||++|||+||+|+||++|++|++|++++++++++|.+++++|+|++||||+|+|++||||||+++|+|||++|++
T Consensus 449 ~yf~sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~~~~~~~~~vp~P~~WgGy~v~P~~iEFWQgr~~RLHdR~~Y~r 528 (544)
T PLN02918 449 NYFHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELEKKYSDGSVIPKPKNWGGYRLKPNLFEFWQGQQSRLHDRLQYSL 528 (544)
T ss_pred HHHHhCCccccceEEecCCCCcCCCHHHHHHHHHHHHHHhcCCCCCCCCCCceeEEEecCEEEECCCCCCCccceEEEEe
Confidence 99999999999999999999999999999999999999997643499999999999999999999999999999999998
Q ss_pred cCcCCCCCcEEEEecC
Q 036952 296 QEINGKRVWKINRLCP 311 (311)
Q Consensus 296 ~~~~~~~~W~~~rL~P 311 (311)
...+++++|+++||+|
T Consensus 529 ~~~~~~~~W~~~rL~P 544 (544)
T PLN02918 529 QEVNGKPVWKIHRLAP 544 (544)
T ss_pred cCCCCCCCeEEEEeCC
Confidence 5311223599999998
No 2
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=100.00 E-value=3.2e-84 Score=644.39 Aligned_cols=300 Identities=72% Similarity=1.254 Sum_probs=283.3
Q ss_pred CCCchHHHHHHHHHhccCCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCccccCeEEeccccccccccCCCCcceeecEEe
Q 036952 1 TPRPPFDDLIKRLLCLHGYDQTRQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKSSGPHHFLGGRFV 80 (311)
Q Consensus 1 ~lr~~~~~~i~~in~~~~~~~~~~~~~~vvaiDiPSG~~~d~G~~~~~~i~ad~tit~~~pK~g~~~~~g~~~~~Gg~~i 80 (311)
+|+++|+++|+.||++. ...+|||||||||||+|||++.+.+|+||+||||++||+|+++|+|+.||+|||||
T Consensus 145 ~l~~~~~~lI~~iN~~~-------~~~~vvAVDiPSGl~~dtG~~~~~av~Ad~TvTf~~~K~g~~~~~g~~~~~ggrf~ 217 (462)
T PLN03049 145 APRPPFDDLIQKLVRAA-------GPPPIVSVDIPSGWHVEEGDVNGEGLKPDMLVSLTAPKLCAKMFKGPHHFLGGRFV 217 (462)
T ss_pred CCchHHHHHHHHHHhcC-------CCCcEEEEECCCCccCCCCCcCCceecCCEEEEcccCCchhhccCCceEEeccccC
Confidence 58999999999999751 02689999999999999999999999999999999999999999999889999999
Q ss_pred ChhhHhhcCCCCCCCCCCcceeeeCCCCCCchhhhhhccCCCCcCcccCCCChHHHHHHHHHHHHHcCCCCCCceEEEee
Q 036952 81 PPVIADKYKLRLPPYPGTSMCVRIGKAPSVDISALRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTV 160 (311)
Q Consensus 81 P~~~~~~~~~~~p~y~~~~~~v~l~~a~~~~~~~~r~~y~~~~~~~~~~~~dP~~~f~~Wl~~A~~~~~~~p~a~~LATv 160 (311)
|+++.+||++.+|.|++++++++++....+|+++||++|....|++++++.||++||++||++|+++++.+|++|+||||
T Consensus 218 ~~~~~~~~~~~iP~y~g~~M~v~l~~~~~~~~~~~r~~y~~~~l~~~~~~~~P~~~f~~W~~~a~~~~~~ep~am~LATv 297 (462)
T PLN03049 218 PPAIVEKFKLHLPPYPGTSMCVRIGKTPSVDIAALRENYVGPELLEEQVNADPIDQFKEWFDDAVAAGLREPNAMTLATA 297 (462)
T ss_pred CHHHHHHhCCCCCCCCCCccccccccccccCHHHHHhhhccccCChhhcCCCHHHHHHHHHHHHHHcCCCCCCeeEEEEE
Confidence 99999999999999999999999998888999999999998889999999999999999999999999999999999999
Q ss_pred CCCCce---------------EEEeCCCCccccccccccccCCceeE-eee--cCeeEEEEEEEEEeChHHHHHHHhcCC
Q 036952 161 GKDGKP---------------FWYSTSTGQVKSWCKRWLPVAVETSI-FTY--QSTTVRVEGSVEKVSDEESEQYFHSRP 222 (311)
Q Consensus 161 ~~dG~P---------------~F~T~~~S~~K~~~~~eL~~NP~aal-f~w--~~rQVRv~G~a~~l~~~es~~yf~~rp 222 (311)
|++|+| +||||++|+ |+ +||++||+||| ||| +.|||||+|+|++++++++++||++||
T Consensus 298 d~~G~P~~R~VlLk~~d~~g~~F~Tn~~S~-K~---~eL~~Np~aal~F~w~~~~rQvRv~G~a~~~~~~~s~~yf~~rp 373 (462)
T PLN03049 298 GEDGRPSARIVLLKGVDKRGFVWYTNYDSR-KA---HELSANPKASLVFYWDGLHRQVRVEGSVEKVSEEESDQYFHSRP 373 (462)
T ss_pred CCCCCeeEEEEEEeEEcCCcEEEEECCCCH-HH---HHHhhCCcEEEEeecCCCCEEEEEEEEEEECCHHHHHHHHHhCC
Confidence 999999 899999999 99 99999999999 999 999999999999999999999999999
Q ss_pred cccccceecCCCCCCCCChHHHHHHHHHHHhhccCCCCCCCCCCeeEEEEEceEEEEEeCCCCCCcceEEEeecCcCCCC
Q 036952 223 RGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKR 302 (311)
Q Consensus 223 ~~sqi~a~~s~qs~~i~~r~~l~~~~~~~~~~~~~~~~~p~p~~w~gy~l~P~~iEfwq~~~~r~H~R~~y~r~~~~~~~ 302 (311)
++||++||+|+||+++++++.|+++.++++++|.++.++|+|+|||||+|+|++|||||++.+|+|+|++|++...++++
T Consensus 374 ~~sq~~a~as~qs~~i~~~~~l~~~~~~~~~~~~~~~~~p~p~~w~g~~v~p~~iEfwq~~~~rlHdR~~y~~~~~~~~~ 453 (462)
T PLN03049 374 RGSQIGALVSKQSTVIPGRHILDQSYKELEAKYADSSAIPKPKHWGGYRLKPELIEFWQGRESRLHDRLQYTREEINGKS 453 (462)
T ss_pred hhhhhhheeCCCCCcCCCHHHHHHHHHHHHHhhccCCCCCCCCceEEEEEEeeEEEEccCCCCCCeeEEEEEecCCCCCC
Confidence 99999999999999999999999999999999965457999999999999999999999999999999999985211223
Q ss_pred CcEEEEecC
Q 036952 303 VWKINRLCP 311 (311)
Q Consensus 303 ~W~~~rL~P 311 (311)
+|+.+||+|
T Consensus 454 ~W~~~rl~P 462 (462)
T PLN03049 454 VWKIDRLAP 462 (462)
T ss_pred CEEEEEeCC
Confidence 599999998
No 3
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=2.6e-67 Score=463.43 Aligned_cols=192 Identities=47% Similarity=0.854 Sum_probs=186.5
Q ss_pred chhhhhhccCCCCcCcccCC-CChHHHHHHHHHHHHHcCCCCCCceEEEeeCCCCce---------------EEEeCCCC
Q 036952 111 DISALRENYISPEFLEEQVE-SDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKP---------------FWYSTSTG 174 (311)
Q Consensus 111 ~~~~~r~~y~~~~~~~~~~~-~dP~~~f~~Wl~~A~~~~~~~p~a~~LATv~~dG~P---------------~F~T~~~S 174 (311)
+++++|.+|...+|.+.+++ +|||.||.+||++|+++++.+|+||+|||||.+|+| +||||+.|
T Consensus 4 ~~a~~r~~y~~~~l~~~d~~~~~P~~lF~~Wl~eA~~~~~~ePnAm~lATvd~~G~P~~R~VLLK~~DerGfvFyTN~~S 83 (214)
T COG0259 4 VLANIRREYTKAGLREADLPTANPLTLFRRWLEEAIRAEVNEPNAMTLATVDEQGRPSSRIVLLKELDERGFVFYTNYGS 83 (214)
T ss_pred cchhhHHHhhhcccccccCCccCHHHHHHHHHHHHHhcccCCCceeEEEeecCCCCceeeEEEecccCCCcEEEEeccCC
Confidence 58999999999899999988 999999999999999999999999999999999999 99999999
Q ss_pred ccccccccccccCCceeE-eee--cCeeEEEEEEEEEeChHHHHHHHhcCCcccccceecCCCCCCCCChHHHHHHHHHH
Q 036952 175 QVKSWCKRWLPVAVETSI-FTY--QSTTVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKEL 251 (311)
Q Consensus 175 ~~K~~~~~eL~~NP~aal-f~w--~~rQVRv~G~a~~l~~~es~~yf~~rp~~sqi~a~~s~qs~~i~~r~~l~~~~~~~ 251 (311)
+ || +||++||+||| ||| +.|||||+|.|++|+++|+++||++||++|||+||+|+||.+|++|.+|+.+++++
T Consensus 84 ~-Kg---~eLa~np~Aal~F~W~~L~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~ 159 (214)
T COG0259 84 R-KG---RELAANPYAALLFPWKELERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAEL 159 (214)
T ss_pred c-ch---hhHhhCcceeEEecchhccceEEEeeeeeeCCHHHHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHHH
Confidence 9 99 99999999999 999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCCCCCCCCCCeeEEEEEceEEEEEeCCCCCCcceEEEeecCcCCCCCcEEEEecC
Q 036952 252 EEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 311 (311)
Q Consensus 252 ~~~~~~~~~~p~p~~w~gy~l~P~~iEfwq~~~~r~H~R~~y~r~~~~~~~~W~~~rL~P 311 (311)
.++|++++ ||+|++||||+|.|.+||||||+++|||||++|++.. ++|++.||+|
T Consensus 160 ~~kf~~~~-iP~P~~WgG~ri~p~~iEFWqgr~~RLHdR~~y~r~~----g~W~~~RL~P 214 (214)
T COG0259 160 TAKFADGE-IPRPPHWGGFRIVPESIEFWQGRPSRLHDRLRYRRDD----GGWKIERLAP 214 (214)
T ss_pred HHhcCCCC-CCCCCCccceEeeeeEEEEecCCCccceeeEEEeecC----CCeEEEecCC
Confidence 99999765 9999999999999999999999999999999999863 6899999998
No 4
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.1e-59 Score=413.35 Aligned_cols=203 Identities=46% Similarity=0.806 Sum_probs=190.4
Q ss_pred eeCCCCCCchhhhhhccCCCCcCcccC-CCChHHHHHHHHHHHHHcC-CCCCCceEEEeeCCCCce--------------
Q 036952 103 RIGKAPSVDISALRENYISPEFLEEQV-ESDPINQFRKWFDDAIAAG-LREPNAMALSTVGKDGKP-------------- 166 (311)
Q Consensus 103 ~l~~a~~~~~~~~r~~y~~~~~~~~~~-~~dP~~~f~~Wl~~A~~~~-~~~p~a~~LATv~~dG~P-------------- 166 (311)
..+..+.||++.||.+|.+..|.+..+ +.||+++|++||++|.+.. ..+++||+||||+.||+|
T Consensus 5 ~~~~~~~id~~p~r~~Y~~ssL~e~~l~~~DPv~~F~~wf~EA~~~~~~~~~~am~LsT~~~d~rvssRmvLlKgl~~~g 84 (228)
T KOG2586|consen 5 YVGTTPKIDIAPMRYQYMKSSLEEIELTPSDPVELFKKWFQEAAKDPDIGEINAMTLSTADKDGRVSSRMVLLKGLDHDG 84 (228)
T ss_pred ccCCCCceeechHHHhhhhhhhhhhhcCCCChHHHHHHHHHHHhhCCCcCchhheeehhccccCCcceeeeeeecccCCC
Confidence 345567899999999999998888775 5899999999999999886 679999999999999999
Q ss_pred -EEEeCC-CCccccccccccccCCceeE-eee--cCeeEEEEEEEEEeChHHHHHHHhcCCcccccceecCCCCCCCCCh
Q 036952 167 -FWYSTS-TGQVKSWCKRWLPVAVETSI-FTY--QSTTVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGR 241 (311)
Q Consensus 167 -~F~T~~-~S~~K~~~~~eL~~NP~aal-f~w--~~rQVRv~G~a~~l~~~es~~yf~~rp~~sqi~a~~s~qs~~i~~r 241 (311)
+||||+ .|| |+ ++|++||+||| ||| +.|||||+|+|++|+++++++||++||++|||+||+|+||++|++|
T Consensus 85 f~fytn~~~sr-k~---kdL~~NP~Aal~Fyw~~l~rQVRveG~ve~l~~ee~e~yf~srp~~SqIga~~s~qs~vI~~r 160 (228)
T KOG2586|consen 85 FVFYTNYGTSR-KG---KDLQENPNAALLFYWEDLNRQVRVEGIVEKLPREEAEAYFKSRPRASQIGAWASPQSEVIPDR 160 (228)
T ss_pred eEEEeeccccc-cc---cccccCCcceEEEeehhccceeEEEeccccCCHHHHHHHHhcCcchhhccceecCCCCccCCH
Confidence 999999 788 99 99999999999 999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCeeEEEEEceEEEEEeCCCCCCcceEEEeecCcCCCCCcEEEEecC
Q 036952 242 HVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 311 (311)
Q Consensus 242 ~~l~~~~~~~~~~~~~~~~~p~p~~w~gy~l~P~~iEfwq~~~~r~H~R~~y~r~~~~~~~~W~~~rL~P 311 (311)
++|+.+..++.+.|.+++.||+|++||||+|+|.++|||||+++|+|||++|++... ++.|+..||+|
T Consensus 161 e~l~k~~e~l~~~~~~~~~IpkP~swgg~rl~P~~~EFwQg~~~rLhDR~~yr~~~~--d~~Wk~~rlap 228 (228)
T KOG2586|consen 161 EELEKKDEELTELFGDEQSIPKPDSWGGYRLVPQEFEFWQGQPDRLHDRIVYRRLTV--DEDWKLVRLAP 228 (228)
T ss_pred HHHHHHHHHHHHHhcccccccCCCcccceEEeeeeehhhcCCchhhhheEEEecccC--CCCeeEEecCC
Confidence 999999999999998878899999999999999999999999999999999996543 35899999998
No 5
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=100.00 E-value=1.3e-47 Score=348.55 Aligned_cols=195 Identities=45% Similarity=0.815 Sum_probs=185.0
Q ss_pred CCCchhhhhhccCCCCcCcccCCCChHHHHHHHHHHHHHcCCCCCCceEEEeeCCCCce---------------EEEeCC
Q 036952 108 PSVDISALRENYISPEFLEEQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKP---------------FWYSTS 172 (311)
Q Consensus 108 ~~~~~~~~r~~y~~~~~~~~~~~~dP~~~f~~Wl~~A~~~~~~~p~a~~LATv~~dG~P---------------~F~T~~ 172 (311)
..++++.||++|....|.+++++.||+++|.+||++|++.+..+|++|+|||+|.+|.| +||||.
T Consensus 5 ~~~~~~~~~~~~~~~~l~~~~~~~~P~~~f~~W~~~a~~~~~~~~~~~~LaTvd~~G~P~~R~v~lr~~~~~~l~F~T~~ 84 (217)
T TIGR00558 5 EPIIIANIRYEYTKGGLNEKDLPDDPIDLFEIWFNEAIEARLTEPNAMTLSTVDESGRPSSRMVLLKELDERGFVFYTNY 84 (217)
T ss_pred CCcChHHHhhhcccccCChhhcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEECCCCCEEEEEEEEEEECCCcEEEEECC
Confidence 35689999999998889999999999999999999999999999999999999999999 899999
Q ss_pred CCccccccccccccCCceeE-eee--cCeeEEEEEEEEEeChHHHHHHHhcCCcccccceecCCCCCCCCChHHHHHHHH
Q 036952 173 TGQVKSWCKRWLPVAVETSI-FTY--QSTTVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYK 249 (311)
Q Consensus 173 ~S~~K~~~~~eL~~NP~aal-f~w--~~rQVRv~G~a~~l~~~es~~yf~~rp~~sqi~a~~s~qs~~i~~r~~l~~~~~ 249 (311)
+|+ |+ +||++||+|+| ||| ..+||||+|+|+.++++++++||+++|..+|+.+|+++||++|.++++|+.+..
T Consensus 85 ~S~-K~---~eL~~np~v~l~f~~~~~~~qvrv~G~a~~~~~~~~~~~w~~~~~~sr~~~~~~~q~~~~~~~~~l~~~~~ 160 (217)
T TIGR00558 85 GSR-KG---HQIETNPNAALVFFWPDLERQVRVEGKVEKLPREESDAYFKSRPRGSRIGAWASRQSDVISNREELESKAL 160 (217)
T ss_pred CCh-HH---HHHHhCCcEEEEEEeCCCCEEEEEEEEEEECCHHHHHHHHHhCChhhcceEEcCCCCcccCCHHHHHHHHH
Confidence 999 99 99999999999 999 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCCCCCCCCeeEEEEEceEEEEEeCCCCCCcceEEEeecCcCCCCCcEEEEecC
Q 036952 250 ELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 311 (311)
Q Consensus 250 ~~~~~~~~~~~~p~p~~w~gy~l~P~~iEfwq~~~~r~H~R~~y~r~~~~~~~~W~~~rL~P 311 (311)
++.+++.+ ..+|+|++||||+|.|++|||||++.+|+|+|++|++.. ++|+.++|+|
T Consensus 161 ~~~~~~~~-~~~p~p~~f~~~~l~p~~vEf~~l~~~r~H~R~~y~~~~----~~W~~~~l~P 217 (217)
T TIGR00558 161 KNTEKFED-AEIPRPDYWGGYRVVPEEIEFWQGRPSRLHDRFVYRREN----DPWKRVRLAP 217 (217)
T ss_pred HHHhhccC-CCCCCCCceEEEEEECCEEEEccCCCCCCceEEEEEecC----CCEEEEEeCC
Confidence 88888764 358999999999999999999999999999999999853 5899999998
No 6
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=100.00 E-value=1.2e-44 Score=324.02 Aligned_cols=176 Identities=47% Similarity=0.891 Sum_probs=167.6
Q ss_pred ccCCCChHHHHHHHHHHHHHcCCCCCCceEEEeeCCCCce---------------EEEeCCCCccccccccccccCCcee
Q 036952 127 EQVESDPINQFRKWFDDAIAAGLREPNAMALSTVGKDGKP---------------FWYSTSTGQVKSWCKRWLPVAVETS 191 (311)
Q Consensus 127 ~~~~~dP~~~f~~Wl~~A~~~~~~~p~a~~LATv~~dG~P---------------~F~T~~~S~~K~~~~~eL~~NP~aa 191 (311)
.+++.||+++|..||++|++.+..+|++|+|||||.||.| +||||.+|+ |+ +||++||+||
T Consensus 2 ~~~~~~P~~~~~~wl~~a~~~~~~~~~~~~lATv~~dG~P~~R~V~lr~~~~~~l~f~T~~~S~-K~---~~l~~np~va 77 (195)
T PRK05679 2 ADLPAEPLALFERWLAEAVKAELNDPNAMTLATVDEDGRPSQRIVLLKGFDERGFVFYTNYESR-KG---RQLAANPKAA 77 (195)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCCCceEEEEeeCCCCCEEEEEEEEEEECCCeEEEEeCCCCH-HH---HHHhhCCcEE
Confidence 3579999999999999999999999999999999999999 899999999 99 9999999999
Q ss_pred E-eee--cCeeEEEEEEEEEeChHHHHHHHhcCCcccccceecCCCCCCCCChHHHHHHHHHHHhhccCCCCCCCCCCee
Q 036952 192 I-FTY--QSTTVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWG 268 (311)
Q Consensus 192 l-f~w--~~rQVRv~G~a~~l~~~es~~yf~~rp~~sqi~a~~s~qs~~i~~r~~l~~~~~~~~~~~~~~~~~p~p~~w~ 268 (311)
| ||| ..+||||+|+|++++++++++||.++|+++|+.+|+++||++|.++++++++++++..+|.+ ..+++|++||
T Consensus 78 l~~~~~~~~~qvrv~G~a~~~~~~~~~~~w~~~p~~~r~~~~~~~qg~~i~~~~~~~~~~~~~~~~~~~-~~~~~p~~f~ 156 (195)
T PRK05679 78 LLFPWKSLERQVRVEGRVEKVSAEESDAYFASRPRGSQIGAWASKQSRPISSRAALEAKFAEVKAKFAQ-GEVPRPPHWG 156 (195)
T ss_pred EEEecCCCCEEEEEEEEEEEeCHHHHHHHHHhCCHhhhceeeeCCCCCccCCHHHHHHHHHHHHhhccC-CCCCCCCccE
Confidence 9 999 89999999999999999999999999999999999999999999999999999999998854 4689999999
Q ss_pred EEEEEceEEEEEeCCCCCCcceEEEeecCcCCCCCcEEEEecC
Q 036952 269 GYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 311 (311)
Q Consensus 269 gy~l~P~~iEfwq~~~~r~H~R~~y~r~~~~~~~~W~~~rL~P 311 (311)
||+|.|++|||||++.+|+|+|++|.+.+ ++|+.++|+|
T Consensus 157 ~~~l~p~~veflql~~~r~H~R~~y~~~~----~~W~~~~l~P 195 (195)
T PRK05679 157 GYRVVPESIEFWQGRPSRLHDRILYRRDD----GGWKIERLAP 195 (195)
T ss_pred EEEEECCEEEEcCCCCCCCcceEEEEECC----CCEEEEEeCC
Confidence 99999999999999999999999999753 5799999998
No 7
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=99.89 E-value=2.3e-23 Score=192.84 Aligned_cols=97 Identities=57% Similarity=1.094 Sum_probs=89.3
Q ss_pred CCCchHHHHHHHHHhccCCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCccccCeEEeccccccccccCCCCcceeecEEe
Q 036952 1 TPRPPFDDLIKRLLCLHGYDQTRQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKSSGPHHFLGGRFV 80 (311)
Q Consensus 1 ~lr~~~~~~i~~in~~~~~~~~~~~~~~vvaiDiPSG~~~d~G~~~~~~i~ad~tit~~~pK~g~~~~~g~~~~~Gg~~i 80 (311)
+|+++++++|+.||.+. +...+|||||||||+++|||.+.+.+|+||+||||++||+|+++++|+ +|+|+.+|
T Consensus 150 ~l~~~~~~li~~iN~~~------~~~~~viAIDIPSGl~adtG~~~~~av~Ad~TvTf~~~K~gl~~~~g~-~~~G~v~~ 222 (246)
T PLN03050 150 APRAPFDTLLAQMVQQQ------KSPPPIVSVDVPSGWDVDEGDVSGTGMRPDVLVSLTAPKLSAKKFEGR-HFVGGRFL 222 (246)
T ss_pred ccchHHHHHHHHHHhhc------cCCCcEEEEeCCCcccCCCCCcCCceEeCCEEEEccccccccccCCCc-cceeeEEC
Confidence 58999999999999751 124789999999999999999999999999999999999999999999 89999999
Q ss_pred ChhhHhhcCCCCCCCCCCcceeee
Q 036952 81 PPVIADKYKLRLPPYPGTSMCVRI 104 (311)
Q Consensus 81 P~~~~~~~~~~~p~y~~~~~~v~l 104 (311)
|++++++|++.+|+|||.++.+++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~ 246 (246)
T PLN03050 223 PPAIAEKYGLQKPPYPGVSQVMEV 246 (246)
T ss_pred CHHHHHHhCCcCCCCCCcceEEeC
Confidence 999999999999999999998764
No 8
>TIGR00197 yjeF_nterm yjeF N-terminal region. This model is built on yeast protein YNL200C and the N-terminal regions of E. coli yjeF and its orthologs in various species. The C-terminal region of yjeF and its orthologs shows similarity to hydroxyethylthiazole kinase (thiM) and other enzymes involved in thiamine biosynthesis. Yeast YKL151C and B. subtilis yxkO match the yjeF C-terminal domain but lack this region.
Probab=99.70 E-value=2.8e-17 Score=148.38 Aligned_cols=69 Identities=32% Similarity=0.494 Sum_probs=64.1
Q ss_pred CCCchHHHHHHHHHhccCCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCccccCeEEeccccccccccCCCCcceeecEEe
Q 036952 1 TPRPPFDDLIKRLLCLHGYDQTRQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKSSGPHHFLGGRFV 80 (311)
Q Consensus 1 ~lr~~~~~~i~~in~~~~~~~~~~~~~~vvaiDiPSG~~~d~G~~~~~~i~ad~tit~~~pK~g~~~~~g~~~~~Gg~~i 80 (311)
+++++++++|++||++ +.+||||||||||++|||.+.+.+|+||+||||++||.|+++++|+ + +|...+
T Consensus 130 ~l~~~~~~~i~~iN~~---------~~~vlAiDiPSGl~~dtG~~~~~av~Ad~Tvtf~~~K~gl~~~~~~-~-~G~v~v 198 (205)
T TIGR00197 130 KLREPFKTIVESINEL---------PAPIVSVDIPSGLDVDTGAIEGPAVNADLTITFHAIKPCLLSDRAD-V-TGELKV 198 (205)
T ss_pred ccchHHHHHHHHHHhC---------CCCeEEEecCCcccCCCCCCCCcceeCCEEEEecCCCchhccCCcc-C-ccEEEE
Confidence 5899999999999986 6799999999999999999999999999999999999999999998 7 886664
No 9
>PF10590 PNPOx_C: Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region; InterPro: IPR019576 Pyridoxamine 5'-phosphate oxidase (1.4.3.5 from EC) is an enzyme that is involved in the de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate. It oxidizes pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P. The enzyme requires the presence of flavin mononucleotide (FMN) as a cofactor, although there is some evidence that coenzyme F420 may perform this role in some species []. The sequences of the enzyme from bacterial (genes pdxH or fprA) [] and fungal (gene PDX3) [] sources show that this protein has been highly conserved throughout evolution. PdxH is evolutionary related [] to one of the enzymes in the phenazine biosynthesis protein pathway, phzD (also known as phzG). This entry represents one of the two dimerisation regions of the protein, located at the edge of the dimer interface, at the C terminus, being the last three beta strands, S6, S7, and S8 along with the last three residues to the end. In P21159 from SWISSPROT, S6 runs from residues 178-192, S7 from 200-206 and S8 from 211-215. the extended loop, of residues 167-177 may well be involved in the pocket formed between the two dimers that positions the FMN molecule []. ; GO: 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0055114 oxidation-reduction process; PDB: 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A 1JNW_A 1G78_A 1TY9_A 1CI0_A 1NRG_A ....
Probab=99.66 E-value=1.3e-16 Score=108.99 Aligned_cols=42 Identities=57% Similarity=1.207 Sum_probs=38.2
Q ss_pred eeEEEEEceEEEEEeCCCCCCcceEEEeecCcCCCCCcEEEEecC
Q 036952 267 WGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 311 (311)
Q Consensus 267 w~gy~l~P~~iEfwq~~~~r~H~R~~y~r~~~~~~~~W~~~rL~P 311 (311)
|+||+|+|++|||||++++|+|||++|++.+ +++|+.++|+|
T Consensus 1 WgGy~l~P~~iEFWqg~~~RlHdR~~y~r~~---~~~W~~~rL~P 42 (42)
T PF10590_consen 1 WGGYRLVPEEIEFWQGRPDRLHDRIRYTRDE---DGGWTKERLQP 42 (42)
T ss_dssp EEEEEEEECEEEEEEEETTSEEEEEEEEEET---TTCEEEEEE-T
T ss_pred CCeEEEEcCEEEEeCCCCCCCEEEEEEEecC---CCCEEEEEEcC
Confidence 8999999999999999999999999999963 25799999998
No 10
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.1e-16 Score=156.31 Aligned_cols=97 Identities=44% Similarity=0.807 Sum_probs=88.4
Q ss_pred CCCchHHHHHHHHHhccCCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCc---cccCeEEeccccccccccCCCCcceeec
Q 036952 1 TPRPPFDDLIKRLLCLHGYDQTRQKRPVIVSVDIPSGWHVEEGDIGDEG---IKPDMLVSLTAPKLCAKKSSGPHHFLGG 77 (311)
Q Consensus 1 ~lr~~~~~~i~~in~~~~~~~~~~~~~~vvaiDiPSG~~~d~G~~~~~~---i~ad~tit~~~pK~g~~~~~g~~~~~Gg 77 (311)
++|++|..++..||+. ..+|+||||||||++++|...... +.++.+||+++||+|...+.|.+||+||
T Consensus 353 ~~r~~f~~i~~~i~~~---------~i~I~SVDiPsGwdve~G~~s~~~~~~~~p~~lisltaPk~~~~~~~g~~hyLgg 423 (453)
T KOG2585|consen 353 PVRPPFDAIVAWINQN---------AIPILSVDIPSGWDVEKGSPSIGDAKTITPDALISLTAPKPCSKQATGNKHYLGG 423 (453)
T ss_pred CcccchhHHHHHHHhc---------cCceEEecCCCccccccCCcccccccccCcchhhhccCcHHHHHhhcCCceEEcc
Confidence 4789999999999976 678999999999999999765544 4599999999999999999997799999
Q ss_pred EEeChhhHhhcCCCCCCCCCCcceeeeCC
Q 036952 78 RFVPPVIADKYKLRLPPYPGTSMCVRIGK 106 (311)
Q Consensus 78 ~~iP~~~~~~~~~~~p~y~~~~~~v~l~~ 106 (311)
++||+.+.+++++.+|.|+|+++++++..
T Consensus 424 rgIP~~~~~k~gi~~~~y~G~~~vi~l~~ 452 (453)
T KOG2585|consen 424 RGIPQQFYRKYGILYPSYPGTKFVIPLHS 452 (453)
T ss_pred CCCCHHHHHHhccccCCCCCceEEEecCC
Confidence 99999999999999999999999998764
No 11
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.7e-16 Score=142.86 Aligned_cols=66 Identities=30% Similarity=0.490 Sum_probs=62.3
Q ss_pred CCCchHHHHHHHHHhccCCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCccccCeEEeccccccccccCCCCcceee
Q 036952 1 TPRPPFDDLIKRLLCLHGYDQTRQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKSSGPHHFLG 76 (311)
Q Consensus 1 ~lr~~~~~~i~~in~~~~~~~~~~~~~~vvaiDiPSG~~~d~G~~~~~~i~ad~tit~~~pK~g~~~~~g~~~~~G 76 (311)
++|+|++.+|+.+|++ ..|||||||||||++|||.+.+.+|+||+||||+.+|.|++.+++. .++|
T Consensus 135 ~lrep~a~~Ie~iN~~---------~~pivAVDiPSGl~~dtG~~~~~av~Ad~TVTf~~~K~gl~~~~a~-~~~g 200 (203)
T COG0062 135 PLREPFASLIEAINAS---------GKPIVAVDIPSGLDADTGEVLGAAVKADLTVTFGALKPGLLTGPAR-DYVG 200 (203)
T ss_pred CCccHHHHHHHHHHhc---------CCceEEEeCCCCcCCCCCcccCcceeccEEEEecCcchHhhccccc-cccc
Confidence 5899999999999977 7899999999999999999999999999999999999999999998 6666
No 12
>PRK10565 putative carbohydrate kinase; Provisional
Probab=99.54 E-value=7.3e-15 Score=148.90 Aligned_cols=70 Identities=27% Similarity=0.373 Sum_probs=65.1
Q ss_pred CCCchHHHHHHHHHhccCCCCCCCCCCcEEEEEcCCCCCCCCCCCCCCccccCeEEeccccccccccCCCCcceeecEEe
Q 036952 1 TPRPPFDDLIKRLLCLHGYDQTRQKRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLCAKKSSGPHHFLGGRFV 80 (311)
Q Consensus 1 ~lr~~~~~~i~~in~~~~~~~~~~~~~~vvaiDiPSG~~~d~G~~~~~~i~ad~tit~~~pK~g~~~~~g~~~~~Gg~~i 80 (311)
+++++++++|+.||++ ..+|||||||||+++|||.+.+.+|+||+||||+++|+|+++++|+ .|+|...+
T Consensus 145 ~l~~~~~~li~~iN~~---------~~~vvAiDiPSGl~~dtG~~~~~av~Ad~Tvtf~~~K~g~~~~~~~-~~~G~v~v 214 (508)
T PRK10565 145 APREPYAALIDQANAH---------PAPVVALDIPSGLLAETGATPGAVINADHTVTFIALKPGLLTGKAR-DVVGQLHF 214 (508)
T ss_pred CCcHHHHHHHHHHhcC---------CCCEEEecCCCcccCCCCCCCCceecCCEEEEecccCCcccccchh-hheeeEEE
Confidence 5899999999999976 6789999999999999999999999999999999999999999998 79987664
No 13
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=99.16 E-value=4.9e-11 Score=96.39 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=55.8
Q ss_pred HHHHHHc-CCCCCCceEEEeeC-CCCce---------------------EEEeCCCCccccccccccc-cCCceeE-eee
Q 036952 141 FDDAIAA-GLREPNAMALSTVG-KDGKP---------------------FWYSTSTGQVKSWCKRWLP-VAVETSI-FTY 195 (311)
Q Consensus 141 l~~A~~~-~~~~p~a~~LATv~-~dG~P---------------------~F~T~~~S~~K~~~~~eL~-~NP~aal-f~w 195 (311)
|+++++. .......++|||+| ++|.| .|+||.+|. |+ .||. .||.+++ ||.
T Consensus 8 L~~~~~~~~~~~~~~~~LATv~~~~~~P~~RTvVlRgf~~~~~~~~~~L~f~TD~RS~-Kv---~~l~~~~p~~e~~~~~ 83 (100)
T PF12766_consen 8 LERALKKNRSHPFRYFQLATVDPPDGSPRVRTVVLRGFDPDLKPESDLLTFHTDARSP-KV---AQLASANPRVELVFWF 83 (100)
T ss_dssp HHHHHHHTTTCGGGCEEEEEEE-TTTEEEEEEEEEEEEETT----TTEEEEEEETTSH-HH---HHHH-H--EEEEEEEE
T ss_pred HHHHHhhcCCCCCceeEEEEecCCCCCCceeEEEEcCcccccccccCeEEEEecCCch-hH---HHHhccCCCEEEEEEe
Confidence 5677777 55566679999999 89999 799999999 99 9999 9999999 888
Q ss_pred --cCeeEEEEEEEEEeC
Q 036952 196 --QSTTVRVEGSVEKVS 210 (311)
Q Consensus 196 --~~rQVRv~G~a~~l~ 210 (311)
...|+||.|.|..+.
T Consensus 84 ~~~~~Q~Ri~G~a~ii~ 100 (100)
T PF12766_consen 84 PETREQFRIRGRASIIG 100 (100)
T ss_dssp CCCTEEEEEEEEEEEE-
T ss_pred CCccEEEEEEEEEEEEC
Confidence 999999999998863
No 14
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=99.12 E-value=8e-11 Score=90.60 Aligned_cols=59 Identities=34% Similarity=0.520 Sum_probs=54.7
Q ss_pred CCCceEEEeeCCCCce----------------EEEeCCCCccccccccccccCCceeE-eee---cCeeEEEEEEEEEeC
Q 036952 151 EPNAMALSTVGKDGKP----------------FWYSTSTGQVKSWCKRWLPVAVETSI-FTY---QSTTVRVEGSVEKVS 210 (311)
Q Consensus 151 ~p~a~~LATv~~dG~P----------------~F~T~~~S~~K~~~~~eL~~NP~aal-f~w---~~rQVRv~G~a~~l~ 210 (311)
+...++|||++.||.| +|+|+..|+ |. ++|.+||+|+| |.+ ..++|+|.|+|+.++
T Consensus 11 ~~~~~~laTv~~dG~P~~~~v~~~~~~~~~~i~~~t~~~~~-k~---~nl~~np~v~l~~~~~~~~~~~v~~~G~a~~~~ 86 (89)
T PF01243_consen 11 ESKYCVLATVDEDGRPHASPVWFVYDDDDNTIYFATNPGSR-KV---RNLRRNPRVSLLFCDPEGTRRGVRVSGTAEILT 86 (89)
T ss_dssp STSEEEEEEEETTSEEEEEEEEEEEECTTTEEEEEEETTSH-HH---HHHHHSTEEEEEEEETTTTTEEEEEEEEEEEES
T ss_pred CCCEEEEEEECCCCCEEEEEEeeecCCceeEEEEeecCCCC-ch---hhCccCCeEEEEEEEcCcCceEEEEEEEEEEEc
Confidence 5688999999999999 899999999 99 99999999999 777 379999999999999
Q ss_pred hHH
Q 036952 211 DEE 213 (311)
Q Consensus 211 ~~e 213 (311)
++|
T Consensus 87 d~E 89 (89)
T PF01243_consen 87 DEE 89 (89)
T ss_dssp HHH
T ss_pred CCC
Confidence 876
No 15
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=99.07 E-value=6.5e-11 Score=103.76 Aligned_cols=40 Identities=30% Similarity=0.649 Sum_probs=32.8
Q ss_pred CCCcEEEEEcCCCCCCCCCCCCCCccccCeEEeccccccc
Q 036952 25 KRPVIVSVDIPSGWHVEEGDIGDEGIKPDMLVSLTAPKLC 64 (311)
Q Consensus 25 ~~~~vvaiDiPSG~~~d~G~~~~~~i~ad~tit~~~pK~g 64 (311)
.+.+|||||||||+++|||.+.+.+|+||+||||++||.|
T Consensus 130 ~~~~viAiDiPSGl~~dtG~~~~~~v~Ad~Tvt~g~~K~G 169 (169)
T PF03853_consen 130 SRAPVIAIDIPSGLDADTGEVDGPAVRADYTVTFGAPKPG 169 (169)
T ss_dssp HCSEEEEESS-TTCBTTTB-BSSSS---SEEEEESSEEGG
T ss_pred cCCcEEEecCCCCccCCCCCcCCCEEEcceeeecCCcCCC
Confidence 3578999999999999999999999999999999999987
No 16
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=99.06 E-value=1.1e-09 Score=88.84 Aligned_cols=54 Identities=31% Similarity=0.383 Sum_probs=48.2
Q ss_pred EEEeeCCCCce----------------EEEeCCCCccccccccccccCCceeE-eee--cC-eeEEEEEEEEEeChHH
Q 036952 156 ALSTVGKDGKP----------------FWYSTSTGQVKSWCKRWLPVAVETSI-FTY--QS-TTVRVEGSVEKVSDEE 213 (311)
Q Consensus 156 ~LATv~~dG~P----------------~F~T~~~S~~K~~~~~eL~~NP~aal-f~w--~~-rQVRv~G~a~~l~~~e 213 (311)
+|||++.+|.| +|+|+..|+ |. ++|++||+|+| |++ .. ++|+|+|+|+.+++++
T Consensus 1 ~LaTv~~~G~P~~~pv~~~~~~~~~~l~f~t~~~s~-k~---~~l~~np~v~l~~~~~~~~~~~v~i~G~a~~v~d~~ 74 (117)
T TIGR03618 1 VLATIRADGRPQLSPVWFGVDPDGDILVVSTTAGRA-KA---RNLRRDPRVSLSVLDPDFPYRYVEVEGTAELVEDPD 74 (117)
T ss_pred CEEEECCCCCEEEEEEEEEEcCCCCEEEEEecCCcH-hh---HhhhhCCeEEEEEECCCCCccEEEEEEEEEEecCCc
Confidence 48899888888 799999999 99 99999999999 888 33 8999999999998644
No 17
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=98.97 E-value=8.9e-10 Score=92.56 Aligned_cols=62 Identities=29% Similarity=0.401 Sum_probs=54.0
Q ss_pred cCCCCCCceEEEeeCCCCce--------------EEEeCCCCccccccccccccCCceeE-eee---cCeeEEEEEEEEE
Q 036952 147 AGLREPNAMALSTVGKDGKP--------------FWYSTSTGQVKSWCKRWLPVAVETSI-FTY---QSTTVRVEGSVEK 208 (311)
Q Consensus 147 ~~~~~p~a~~LATv~~dG~P--------------~F~T~~~S~~K~~~~~eL~~NP~aal-f~w---~~rQVRv~G~a~~ 208 (311)
.-+.....+.|||+++||.| +|+|+.+|+ |. ++|++||+|+| |+. ..++|+|+|+|+.
T Consensus 9 ~~L~~~~~~~LaT~~~dG~P~~~P~~~~~~d~~l~~~t~~~s~-K~---~~l~~np~Vsl~~~~~~~~~~~v~v~G~a~i 84 (130)
T TIGR03667 9 RRLREESIVWLTTVRRSGQPQPVPVWFLWDGTEFLIYSRPQAA-KL---RNIRRNPRVSLHLNSDGRGGDVVVFTGTAEV 84 (130)
T ss_pred HHhcCCCeEEEEEECCCCceEEEEEEEEEECCEEEEEeCCcCH-HH---HHHhhCCcEEEEEEcCCCCceEEEEEEEEEE
Confidence 33456777889999999999 799999999 99 99999999999 665 3589999999999
Q ss_pred eChH
Q 036952 209 VSDE 212 (311)
Q Consensus 209 l~~~ 212 (311)
+.+.
T Consensus 85 ~~d~ 88 (130)
T TIGR03667 85 VADA 88 (130)
T ss_pred eCCc
Confidence 9864
No 18
>COG5135 Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=3.8e-09 Score=93.89 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=102.9
Q ss_pred HHHHcCC--CCCCceEEEeeCCC-Cce--------------------EEEeCCCCccccccccccccCC-----------
Q 036952 143 DAIAAGL--REPNAMALSTVGKD-GKP--------------------FWYSTSTGQVKSWCKRWLPVAV----------- 188 (311)
Q Consensus 143 ~A~~~~~--~~p~a~~LATv~~d-G~P--------------------~F~T~~~S~~K~~~~~eL~~NP----------- 188 (311)
.+++.+. ..+.-++||||+.. |.| +|.||.+|. |+ .||...|
T Consensus 12 ~~lk~N~dv~~~~yfQlATv~~~~~~PrnRTVvfRgFl~~D~~tn~L~F~TD~rS~-Ki---~ei~~qp~~~~~s~~~~~ 87 (245)
T COG5135 12 QSLKNNTDVEPFVYFQLATVDELTNKPRNRTVVFRGFLFHDKRTNVLTFNTDMRSS-KI---TEIFIQPNSNNSSDSKTP 87 (245)
T ss_pred HHHhcCCccccceeEEEEeecccCCCCccceEEEeeeeecccccceEEEecchhhh-hh---hHHhhccccCCCCCCCcc
Confidence 3444443 56788999999966 888 899999999 99 9998888
Q ss_pred ceeE-eee--cCeeEEEEEEEEEeChHHHHHHHhcCCcccccceec--CCCCCCCCChHHHHHH------HHHHHhhccC
Q 036952 189 ETSI-FTY--QSTTVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIV--SKQSSVIPGRHVLYQQ------YKELEEKFSD 257 (311)
Q Consensus 189 ~aal-f~w--~~rQVRv~G~a~~l~~~es~~yf~~rp~~sqi~a~~--s~qs~~i~~r~~l~~~------~~~~~~~~~~ 257 (311)
...+ ||+ +..|+||.|....++.+.+...|.-+ .+-+--.. +.-..++....+=+.+ ..+.++.|.-
T Consensus 88 ~fEaC~yfP~T~eQ~RisGQ~~l~s~~~~~~~~~Pa--~~~t~d~l~~~~~r~p~~w~~~~~~r~i~~~~~~Ed~a~f~p 165 (245)
T COG5135 88 FFEACFYFPETWEQYRISGQCFLISKQFKYDIFSPA--FSETNDDLTDEEIRTPINWDDDDDKRNIENDEHHEDEADFYP 165 (245)
T ss_pred HHHHHhcccchhhheEeeeeEEEEchhhcCcccCch--hhhhhhhhccccccCcccCCCchhccccccccCccchhhcCC
Confidence 6777 888 99999999999999988876555321 11111000 1111111110000000 0011111110
Q ss_pred --------C--CCCCCC-------------------CCeeEEEEEceEEEEEeCCCCCCcceEEEeecCcCCCCCcEEEE
Q 036952 258 --------W--SLIPKP-------------------EFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINR 308 (311)
Q Consensus 258 --------~--~~~p~p-------------------~~w~gy~l~P~~iEfwq~~~~r~H~R~~y~r~~~~~~~~W~~~r 308 (311)
+ ..-|.| ++||...+.++.|||+.+. .|.-.|..|.|+. +...|+.++
T Consensus 166 pP~~s~~q~~~~~~P~P~~~~~~e~~~~l~~~~~~~~~F~lv~le~~~VdfLnL~-g~pg~R~l~~rd~--n~~~W~~q~ 242 (245)
T COG5135 166 PPQLSRHQKSLYRKPAPGQKLTSETSKQLDKLHAGLENFGLVCLEVDSVDFLNLK-GRPGERWLFQRDD--NKDLWEEQE 242 (245)
T ss_pred CCCCCcccccccccCCCcccccccChhhHHHHHhhhcceeEEEeecCceeeeeec-CCCCceeeEeccC--Ccchhhccc
Confidence 0 001233 4689999999999999998 5688999999863 225799999
Q ss_pred ecC
Q 036952 309 LCP 311 (311)
Q Consensus 309 L~P 311 (311)
++|
T Consensus 243 Vnp 245 (245)
T COG5135 243 VNP 245 (245)
T ss_pred cCC
Confidence 987
No 19
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=98.55 E-value=2.4e-07 Score=79.01 Aligned_cols=98 Identities=21% Similarity=0.415 Sum_probs=78.0
Q ss_pred CCceEEEeeCCCCce----------------EEEeCCCCccccccccccccCCceeE-eee--cCeeEEEEEEEEEeCh-
Q 036952 152 PNAMALSTVGKDGKP----------------FWYSTSTGQVKSWCKRWLPVAVETSI-FTY--QSTTVRVEGSVEKVSD- 211 (311)
Q Consensus 152 p~a~~LATv~~dG~P----------------~F~T~~~S~~K~~~~~eL~~NP~aal-f~w--~~rQVRv~G~a~~l~~- 211 (311)
-....|+||..+|.| +|||+..|+ |+ .+|+.||+|++ |-. ..-=|-|+|+|+.+.+
T Consensus 17 ~kv~~l~tv~~~g~phsRpM~f~hdg~~~tiwf~T~kds~-~v---~eik~n~~v~v~~~~~~~~~fv~v~Gtael~~dr 92 (145)
T COG3871 17 SKVGMLATVQENGHPHSRPMTFNHDGPKGTIWFFTNKDSR-KV---EEIKKNPKVCVLFGYDDHDAFVEVSGTAELVEDR 92 (145)
T ss_pred CceEEEEEecCCCCccccceeccCCCCcccEEeeccCchH-HH---HHHhhCCcEEEEEecCCCcceEEEEEEEEeeccH
Confidence 345789999999998 899999999 99 99999999999 766 5567999999999987
Q ss_pred HHHHHHHhcCCcccccceecCCCCCCCCChHHHHHHHHHHHhhccCCCCCCCCCCeeEEEEEceEEEEEeCCCC
Q 036952 212 EESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTS 285 (311)
Q Consensus 212 ~es~~yf~~rp~~sqi~a~~s~qs~~i~~r~~l~~~~~~~~~~~~~~~~~p~p~~w~gy~l~P~~iEfwq~~~~ 285 (311)
+.-+.+|.+ .++.-|+.+ ...| ..+.++|.|+.+++|+.+.+
T Consensus 93 a~~d~~W~~-----------------------------~~~~wFe~G--kedP-~l~~Lkv~~e~i~yw~~~~~ 134 (145)
T COG3871 93 AKIDELWTS-----------------------------VLEAWFEQG--KEDP-DLTMLKVTAEDIDYWNSGDN 134 (145)
T ss_pred HHHHHhhhh-----------------------------hHHHHHhcC--CCCC-CeEEEEEchhHhHHHhccCC
Confidence 455667732 234456433 2334 68999999999999998654
No 20
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=98.37 E-value=1.7e-06 Score=74.07 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=65.6
Q ss_pred CCCCCceEEEeeCCCCce-----E--------------EE--------eCCCCccccccccccccCCceeE-ee-----e
Q 036952 149 LREPNAMALSTVGKDGKP-----F--------------WY--------STSTGQVKSWCKRWLPVAVETSI-FT-----Y 195 (311)
Q Consensus 149 ~~~p~a~~LATv~~dG~P-----~--------------F~--------T~~~S~~K~~~~~eL~~NP~aal-f~-----w 195 (311)
..+++.+.|||+++||.| . || |-..++ |. ++|..||+||+ +. |
T Consensus 9 L~~~~~~~LaTv~~dG~P~vvPv~f~~d~~~~~~~~~~i~~~~~~~~~t~~~~~-K~---~ni~~nPrVs~~v~~~~~~~ 84 (141)
T TIGR03668 9 FAQARVARLATVSPDGEPHLVPVVFAVGAGAVAAGDAVIYTAVDAKPKTTPRLR-RL---RNIEENPRVSLLVDRYDDDW 84 (141)
T ss_pred HccCCEEEEEEECCCCCeEEEeEEEEEccccccCCCCEEEEEecCCCCcccccH-HH---HHHhhCCCEEEEEecCCCCc
Confidence 446788999999999998 1 12 123457 99 99999999999 43 2
Q ss_pred -cCeeEEEEEEEEEeChHHHHHHHhcCCcccccceecCCCCCCCCChHHHHHHHHHHHhhccCCCCCCCCCCeeEEEEEc
Q 036952 196 -QSTTVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKP 274 (311)
Q Consensus 196 -~~rQVRv~G~a~~l~~~es~~yf~~rp~~sqi~a~~s~qs~~i~~r~~l~~~~~~~~~~~~~~~~~p~p~~w~gy~l~P 274 (311)
..+.|+|+|+|+.+.+++. +..+.+..+.++|.. ....|..-..++|.|
T Consensus 85 ~~~~~v~v~G~a~~~~d~~~----------------------------e~~~~~~~l~~kY~~--~~~~~~~~~vi~i~~ 134 (141)
T TIGR03668 85 TRLWWVRADGRAEILRPGEE----------------------------EHAAAVRLLRAKYHQ--YQAVPLEGPVIAIRV 134 (141)
T ss_pred cceEEEEEEEEEEEecCCch----------------------------hhHHHHHHHHHHhHh--hhhcCCCCcEEEEEE
Confidence 2346999999999986541 122222334445532 122333467899999
Q ss_pred eEEEEE
Q 036952 275 ELFEFW 280 (311)
Q Consensus 275 ~~iEfw 280 (311)
+++--|
T Consensus 135 ~r~~~w 140 (141)
T TIGR03668 135 ERWASW 140 (141)
T ss_pred EEEecc
Confidence 988666
No 21
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=98.21 E-value=3.9e-06 Score=70.92 Aligned_cols=66 Identities=18% Similarity=0.184 Sum_probs=54.9
Q ss_pred CCCCCceEEEeeCCCCce--------------EEEeCCCCccccccccccccCCceeE-eee-c--CeeEEEEEEEEEeC
Q 036952 149 LREPNAMALSTVGKDGKP--------------FWYSTSTGQVKSWCKRWLPVAVETSI-FTY-Q--STTVRVEGSVEKVS 210 (311)
Q Consensus 149 ~~~p~a~~LATv~~dG~P--------------~F~T~~~S~~K~~~~~eL~~NP~aal-f~w-~--~rQVRv~G~a~~l~ 210 (311)
+.+.+.+.|+|++.||.| +|+|...|+ |. ++|++||+|++ +.- . .+-|.|+|+|+.+.
T Consensus 9 L~~~~~~~LaT~~~dG~P~~~Pv~~~~d~g~l~f~t~~~~~-K~---~nl~~np~Vsl~v~~~~~~~~~v~v~G~A~~v~ 84 (132)
T TIGR03666 9 LARARYALLTTFRKDGTPVPTPVWAAVDGDKLLVRTKEDSW-KV---KRIRNNPRVTLAPCDRRGRPTGPVVPGRARILD 84 (132)
T ss_pred hccCcEEEEEEECCCCcEEEEEEEEEEECCEEEEEECCcCH-HH---HHHHhCCCEEEEEECCCCCEeEEEEEEEEEEEc
Confidence 346778899999999999 899999999 99 99999999999 654 2 24599999999997
Q ss_pred hHHHHHHH
Q 036952 211 DEESEQYF 218 (311)
Q Consensus 211 ~~es~~yf 218 (311)
+++....+
T Consensus 85 ~~e~~~~~ 92 (132)
T TIGR03666 85 GAETARAR 92 (132)
T ss_pred chhHHHHH
Confidence 66665443
No 22
>KOG4558 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=1.4e-05 Score=71.63 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=88.0
Q ss_pred CCCCCceEEEeeC-CCCce--------------------EEEeCCCCccccccccccc--------------cCCc-eeE
Q 036952 149 LREPNAMALSTVG-KDGKP--------------------FWYSTSTGQVKSWCKRWLP--------------VAVE-TSI 192 (311)
Q Consensus 149 ~~~p~a~~LATv~-~dG~P--------------------~F~T~~~S~~K~~~~~eL~--------------~NP~-aal 192 (311)
+.-+.-++|||++ ..++| .|-|+.+|. |. -+.- ..|- ..|
T Consensus 22 ~~hs~yfQlAT~~~l~~~PrnRTVvfRgF~~h~~R~~~v~~ntdlrss-k~---~~sf~~~~~a~~~~~~~~~~P~~fem 97 (251)
T KOG4558|consen 22 VIHSEYFQLATLPTLEIYPRNRTVVFRGFVWHKPRPDDVLANTDLRSS-KD---IASFKAAEIAEQQKNTFPSGPIPFEM 97 (251)
T ss_pred ccccceEEEeecccccCCcccceEEEecceecCCCCcceeeeccchhh-hh---hhhhhchhhhccccccccCCCcccce
Confidence 4456669999999 77898 688999999 87 3332 1233 456
Q ss_pred -eee--cCeeEEEEEEEEEeChHHHHH-HHhcCCcccccceecCCCCCCCCC------------hHHHHHHHHHH--Hhh
Q 036952 193 -FTY--QSTTVRVEGSVEKVSDEESEQ-YFHSRPRGSQIGAIVSKQSSVIPG------------RHVLYQQYKEL--EEK 254 (311)
Q Consensus 193 -f~w--~~rQVRv~G~a~~l~~~es~~-yf~~rp~~sqi~a~~s~qs~~i~~------------r~~l~~~~~~~--~~~ 254 (311)
||+ +..|+||.|.+..++.+.++. -|..--. -|---.-|-++-+..- ..++.+.+... -.+
T Consensus 98 C~yfp~TweQ~RisGqi~~it~~~~d~~~~dAdn~-dq~~l~~s~~~I~~d~~~e~e~~~~~~~~~~~~~~~~~~~s~sk 176 (251)
T KOG4558|consen 98 CGYFPKTWEQIRISGQIWLITPELADRNEFDADNL-DQDHLINSNGRIPEDWSWEEERRIWELHSPELRASFSTPPSYSK 176 (251)
T ss_pred eeeechhhhheEecceEEEEcccccccccCCcccc-chHHHhhhhccccccccchhhhcccccCCHHHHHhhcCCcchhh
Confidence 788 999999999999996544432 1111000 0000000111111100 00111111100 011
Q ss_pred ccCC---CCCCCC-----------------CCeeEEEEEceEEEEEeCCCCCCcceEEEeecCcCCCCCcEEEEecC
Q 036952 255 FSDW---SLIPKP-----------------EFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQEINGKRVWKINRLCP 311 (311)
Q Consensus 255 ~~~~---~~~p~p-----------------~~w~gy~l~P~~iEfwq~~~~r~H~R~~y~r~~~~~~~~W~~~rL~P 311 (311)
|.+. .+.|.+ ++|+...+.++.|||+.+.+.+. |.++..+...++..|+.++++|
T Consensus 177 ~~~~~~~~P~pg~~~~~e~~~~~~~~~~~~~~f~lv~le~~~VdfLNLk~~~g--r~~~~~~~g~~ek~W~s~~Vnp 251 (251)
T KOG4558|consen 177 YQGDVKVSPLPGTLTGKEDPGVIEAWKTAWGRFSLVVLEANEVDFLNLKPPPG--RKRVLHNRGLNEKQWSSTRVNP 251 (251)
T ss_pred ccCceeecCCCCccccccCccchhhhhccccceeEEEEeccccceeeccCCCc--ceEEEeccCCCcccccccccCC
Confidence 1110 122322 46788899999999999999876 6767654323345799999987
No 23
>PRK03467 hypothetical protein; Provisional
Probab=97.78 E-value=0.00029 Score=60.56 Aligned_cols=68 Identities=9% Similarity=0.228 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCceEEEeeCCCCce---------------EEEeCCCCccccccccccccCCceeE-eee--
Q 036952 134 INQFRKWFDDAIAAGLREPNAMALSTVGKDGKP---------------FWYSTSTGQVKSWCKRWLPVAVETSI-FTY-- 195 (311)
Q Consensus 134 ~~~f~~Wl~~A~~~~~~~p~a~~LATv~~dG~P---------------~F~T~~~S~~K~~~~~eL~~NP~aal-f~w-- 195 (311)
+..+.+||. .=+.++|||.+.+|.. +|.|+..|| .+ +.+.+||+||. ..=
T Consensus 7 ~~~I~~fl~--------~~hvltLa~~~~~~~w~A~cFY~fd~~~~~l~~~S~~~Tr-H~---~~~~~np~VAgTI~~~~ 74 (144)
T PRK03467 7 LTAISRWLA--------KQHVVTLCVGQEGELWCANCFYVFDAQKVAFYLLTEEKTR-HG---QMMGPNAQVAGTVNGQP 74 (144)
T ss_pred HHHHHHHHH--------hCcEEEEEEEcCCCcceEEEEEEEcCCCeEEEEEcCCCCH-HH---HHHhhCCCEEEEEcCCC
Confidence 346677775 4578999999976654 788999999 99 99999999999 544
Q ss_pred ----cCeeEEEEEEEEEeChHH
Q 036952 196 ----QSTTVRVEGSVEKVSDEE 213 (311)
Q Consensus 196 ----~~rQVRv~G~a~~l~~~e 213 (311)
.-+=|-++|.+..+++++
T Consensus 75 ~~v~~I~GvQ~~G~~~~l~~~e 96 (144)
T PRK03467 75 KTVALIRGVQFKGEIRRLEGEE 96 (144)
T ss_pred cchhhceEEEEEEEEEecChhH
Confidence 444566999999999876
No 24
>PRK06733 hypothetical protein; Provisional
Probab=97.15 E-value=0.00077 Score=58.40 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=45.3
Q ss_pred CceEEEeeCC-CCce----------------EEEeCCCCccccccccccccCCceeE-eeecCeeEEEEEEEEEeCh
Q 036952 153 NAMALSTVGK-DGKP----------------FWYSTSTGQVKSWCKRWLPVAVETSI-FTYQSTTVRVEGSVEKVSD 211 (311)
Q Consensus 153 ~a~~LATv~~-dG~P----------------~F~T~~~S~~K~~~~~eL~~NP~aal-f~w~~rQVRv~G~a~~l~~ 211 (311)
..+.|||+|. ||.| +|.-+..|+ =. ++|.+||+|+| ++.-+.-+.|.|+++.+++
T Consensus 21 ~~~~laTv~kedG~Pnv~~Iswv~a~d~~tIr~A~~~~sk-T~---~NLk~Np~v~I~~~~~~~~yqIkG~a~i~~e 93 (151)
T PRK06733 21 RIVTLATTDFEKQVPNVSAISWVYAVSKTSIRFAVDQRSR-IV---ENIRHNPGVVLTIIANESVYSISGAAEILTD 93 (151)
T ss_pred ceEEEEEEccCCCceeEEEEEEEEEcCCCEEEEEEccCcH-hH---HHHhhCCcEEEEEEeCCcEEEEEEEEEEEee
Confidence 3488999994 9999 777888888 77 99999999999 6664333889999998884
No 25
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.0073 Score=50.38 Aligned_cols=57 Identities=28% Similarity=0.374 Sum_probs=45.7
Q ss_pred ceEEEeeCCCCce---------------EEEeCCCCccccccccccccCCceeE-eee-cCeeEEEEEEEEEeChHHHH
Q 036952 154 AMALSTVGKDGKP---------------FWYSTSTGQVKSWCKRWLPVAVETSI-FTY-QSTTVRVEGSVEKVSDEESE 215 (311)
Q Consensus 154 a~~LATv~~dG~P---------------~F~T~~~S~~K~~~~~eL~~NP~aal-f~w-~~rQVRv~G~a~~l~~~es~ 215 (311)
...|||++ +|+| +|.|+..-. = -+||..||.+++ =.- -+.=|||+|.|+-+.+=+..
T Consensus 13 ~~~laTve-~gkPrvRpfq~~f~~g~KlYfcTantK~-~---yKqik~np~vefcg~~kdg~~vrlrg~a~f~~nielk 86 (132)
T COG5015 13 SVALATVE-DGKPRVRPFQVMFVEGEKLYFCTANTKP-Y---YKQIKKNPEVEFCGMDKDGVMVRLRGRAEFVENIELK 86 (132)
T ss_pred cEEEEEcc-CCCcceeeccceeeeCCEEEEEeCCChH-H---HHHHhhCCCeEEEEecCCceEEEEeeeEEeccchHHH
Confidence 37899999 9999 788876544 4 499999999999 555 77779999999999864443
No 26
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=96.46 E-value=0.017 Score=48.70 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=44.9
Q ss_pred CCceEEEeeCCCCce--------------EEEeCCCCccccccccccccCCceeE-eee-------c--------CeeEE
Q 036952 152 PNAMALSTVGKDGKP--------------FWYSTSTGQVKSWCKRWLPVAVETSI-FTY-------Q--------STTVR 201 (311)
Q Consensus 152 p~a~~LATv~~dG~P--------------~F~T~~~S~~K~~~~~eL~~NP~aal-f~w-------~--------~rQVR 201 (311)
-....||+++ +|.| +|+|...++ |. .-|.+|| +++ ++= . -+.|.
T Consensus 12 ~~~g~la~~~-~~~Py~vP~~f~~~~~~ly~h~~~~g~-k~---~~l~~~p-v~~~~~~~~~~~~~~~~~~~~~~y~SVi 85 (143)
T PF12900_consen 12 APVGRLAFVD-DGYPYIVPVNFVYDGGSLYFHGARGGK-KI---ELLRNNP-VCFTVDEVDELVPAESACSFSMNYRSVI 85 (143)
T ss_dssp -SEEEEEEEE-TTEEEEEEEEEEEETTEEEEEECSHSH-HH---HHHHHEE-EEEEEEEEEEEEETSCGGGEEEEEEEEE
T ss_pred CCEEEEEEEe-CCEEEEEEEEEEEECCEEEEEECCcch-HH---HHhccCC-eEEEEEecCcEeecccCCcCcceEEEEE
Confidence 3457899999 7888 899999999 99 9999999 999 554 1 47999
Q ss_pred EEEEEEEeCh
Q 036952 202 VEGSVEKVSD 211 (311)
Q Consensus 202 v~G~a~~l~~ 211 (311)
+.|+++.+++
T Consensus 86 ~~G~~~~v~d 95 (143)
T PF12900_consen 86 VFGRAEEVED 95 (143)
T ss_dssp EEEEEEEEHS
T ss_pred EEEEEEEeCC
Confidence 9999999964
No 27
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=95.69 E-value=0.061 Score=47.29 Aligned_cols=96 Identities=23% Similarity=0.247 Sum_probs=51.5
Q ss_pred CceEEEeeCC----CCce-------------------EEEeCCCCccccccccccccCCceeE-eee--cC---------
Q 036952 153 NAMALSTVGK----DGKP-------------------FWYSTSTGQVKSWCKRWLPVAVETSI-FTY--QS--------- 197 (311)
Q Consensus 153 ~a~~LATv~~----dG~P-------------------~F~T~~~S~~K~~~~~eL~~NP~aal-f~w--~~--------- 197 (311)
+..+|+|++. +|.| +|+-..-+. =. ++|.+||+||| +.+ ..
T Consensus 18 ~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~-ht---~nl~~~~r~SL~i~~~~~~~~~~~~~dp 93 (170)
T PF13883_consen 18 RWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQ-HT---RNLKADPRVSLTISEPQGGDCDNSGVDP 93 (170)
T ss_dssp SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSH-HH---HHHHH--EEEEEEEGGGSSHHHHHT--T
T ss_pred CEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccH-HH---HHHhhCCCEEEEEecCCCCcccccCCCC
Confidence 3456777766 6777 555444445 55 99999999999 888 22
Q ss_pred -----eeEEEEEEEEEeChHHHHHHHhcCCcccccceecCCCCCCCCChHHHHHHHHHHHhhccCCCCCC---CCCCeeE
Q 036952 198 -----TTVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIPGRHVLYQQYKELEEKFSDWSLIP---KPEFWGG 269 (311)
Q Consensus 198 -----rQVRv~G~a~~l~~~es~~yf~~rp~~sqi~a~~s~qs~~i~~r~~l~~~~~~~~~~~~~~~~~p---~p~~w~g 269 (311)
--|.+.|.+++++.++.+. ..+.+.+++++..... .+..|.-
T Consensus 94 ~~~~~~RvtL~G~~~~v~~~e~~~------------------------------a~~~yl~~HP~a~~w~~~~~~hdf~~ 143 (170)
T PF13883_consen 94 EDPACPRVTLTGRAEPVPPDEAAA------------------------------ARAAYLSRHPDAKHWLPFNSPHDFFF 143 (170)
T ss_dssp TSTTS-EEEEEEEEEE--TTTHHH------------------------------HHHHHHHH-GGGGGS-GG---G--EE
T ss_pred CCCCCcEEEEEEEEEEcCchHHHH------------------------------HHHHHHHHCcCccccccccccCccEE
Confidence 3688999999998544211 0112223333221111 3467899
Q ss_pred EEEEceEEEEEeC
Q 036952 270 YRLKPELFEFWQG 282 (311)
Q Consensus 270 y~l~P~~iEfwq~ 282 (311)
|+|.++.|-|--|
T Consensus 144 ~rl~i~~v~~vgG 156 (170)
T PF13883_consen 144 YRLEIERVYLVGG 156 (170)
T ss_dssp EEEEEEEEEEE-S
T ss_pred EEEEEEEEEEECc
Confidence 9999999977544
No 28
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=95.29 E-value=0.058 Score=47.42 Aligned_cols=58 Identities=26% Similarity=0.353 Sum_probs=48.6
Q ss_pred CCCceEEEeeCCCCce--------------EEEeCCCCccccccccccccCCceeE-eee--------------cCeeEE
Q 036952 151 EPNAMALSTVGKDGKP--------------FWYSTSTGQVKSWCKRWLPVAVETSI-FTY--------------QSTTVR 201 (311)
Q Consensus 151 ~p~a~~LATv~~dG~P--------------~F~T~~~S~~K~~~~~eL~~NP~aal-f~w--------------~~rQVR 201 (311)
.-....||+++ +|+| +||+...++ |. .-|..||.||+ ..- -.+.|.
T Consensus 22 ~~~~~~La~~~-~~~PyivP~~y~~~~~~lY~h~~~~gr-k~---~~l~~~p~V~~ev~~~~~~~~~~~~~~s~~y~SVv 96 (166)
T COG3467 22 AGRVGRLAFAG-DGQPYVVPLNYGYEGGHLYFHGSPEGR-KI---ELLRKNPLVCLEVDEIHGLVLKSPFNSSRNYRSVV 96 (166)
T ss_pred hCCEEEEEEcC-CCCcEEEEeEeEEeCCeEEEEeCCcch-hh---HHhhcCCcEEEEEEccccceecccccCCcceEEEE
Confidence 44568899998 4557 899999999 99 99999999999 655 358899
Q ss_pred EEEEEEEeChHH
Q 036952 202 VEGSVEKVSDEE 213 (311)
Q Consensus 202 v~G~a~~l~~~e 213 (311)
|.|+++.|++.+
T Consensus 97 v~G~~~~l~~~~ 108 (166)
T COG3467 97 VFGRAEELSDLE 108 (166)
T ss_pred EEeEEEEcCChH
Confidence 999999999744
No 29
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=90.82 E-value=0.75 Score=37.92 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=46.1
Q ss_pred ceEEEeeC-CCCce---------------EEEeCCC----CccccccccccccCCceeE-eeecCeeEEEEEEEEEeChH
Q 036952 154 AMALSTVG-KDGKP---------------FWYSTST----GQVKSWCKRWLPVAVETSI-FTYQSTTVRVEGSVEKVSDE 212 (311)
Q Consensus 154 a~~LATv~-~dG~P---------------~F~T~~~----S~~K~~~~~eL~~NP~aal-f~w~~rQVRv~G~a~~l~~~ 212 (311)
.+.|-|++ .+|+| ++.|+.. +. .. ++|.+||.|.+ + +--+..++++.++++
T Consensus 9 ~~lL~t~GRkSG~~r~tpl~~~~~~~~~~vvas~~G~~~~p~-W~---~Nl~A~p~v~v~~----~g~~~~~~ar~v~~~ 80 (113)
T TIGR00026 9 VLLLTTTGRKSGKPRTTPVTYVRHDPGVLIVASNGGAPRHPD-WY---KNLKANPRVRVRV----GGKTFVATARLVSGD 80 (113)
T ss_pred EEEEEECCCCCCcEEEEEEEEEEECCEEEEEEecCCCCCCCH-HH---HHhhhCCcEEEEE----CCEEEEEEEEECCch
Confidence 57788885 78988 4447775 55 67 99999999998 5 223589999999999
Q ss_pred HHHHHHhc
Q 036952 213 ESEQYFHS 220 (311)
Q Consensus 213 es~~yf~~ 220 (311)
|.++.|..
T Consensus 81 e~~~~~~~ 88 (113)
T TIGR00026 81 ERDQLWAG 88 (113)
T ss_pred hHHHHHHH
Confidence 99888854
No 30
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]
Probab=80.12 E-value=6.5 Score=34.84 Aligned_cols=57 Identities=25% Similarity=0.256 Sum_probs=37.7
Q ss_pred CCceEEEeeCCCCce----------------EEEe-CCCCccccccccccccCCceeE-eee---cCeeEEEEEEEEEeC
Q 036952 152 PNAMALSTVGKDGKP----------------FWYS-TSTGQVKSWCKRWLPVAVETSI-FTY---QSTTVRVEGSVEKVS 210 (311)
Q Consensus 152 p~a~~LATv~~dG~P----------------~F~T-~~~S~~K~~~~~eL~~NP~aal-f~w---~~rQVRv~G~a~~l~ 210 (311)
...++|||+|.||.| ++-+ +...- |. .+.|.+||.+++ +.- ...=+.|.|+++...
T Consensus 41 ~~~~~laT~d~dG~p~~~~~p~~qr~d~~~~~~v~d~~~~~-~~--~~~lgnn~~~tl~n~~~~~~~~~f~v~gt~~I~~ 117 (173)
T COG3576 41 SQLAALATVDKDGPPNVDPIPFAQRGDPAGFTIVIDDNTAG-KT--DRNLGNNPKITLRNILRNRRALLFLVKGTARIQG 117 (173)
T ss_pred ccEEEEEEeccCCCCCcCccchhhccCCCCceEEeCccccc-cc--ccccccCccceeEEeccCCccceEEecceEEEEe
Confidence 456789999999999 2222 22223 33 144899999999 444 445577788777766
Q ss_pred h
Q 036952 211 D 211 (311)
Q Consensus 211 ~ 211 (311)
+
T Consensus 118 ~ 118 (173)
T COG3576 118 R 118 (173)
T ss_pred c
Confidence 4
No 31
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterised as a deazaflavin-dependent nitroreductase [, ]. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3R5Y_D 3R5W_A 3R5R_E 3R5L_A 3R5P_A 3R5Z_B 3H96_A.
Probab=47.26 E-value=22 Score=29.97 Aligned_cols=58 Identities=24% Similarity=0.326 Sum_probs=37.8
Q ss_pred ceEEEeeC-CCCce---------------EEEeCC----CCccccccccccccCCceeE-eeecCeeEEEEEEEEEeChH
Q 036952 154 AMALSTVG-KDGKP---------------FWYSTS----TGQVKSWCKRWLPVAVETSI-FTYQSTTVRVEGSVEKVSDE 212 (311)
Q Consensus 154 a~~LATv~-~dG~P---------------~F~T~~----~S~~K~~~~~eL~~NP~aal-f~w~~rQVRv~G~a~~l~~~ 212 (311)
.+.|.|.+ .+|+| ++.++. .+. =. ++|.+||.|.+ + +--+..++++.++++
T Consensus 27 ~~lLtt~GRkSG~~r~tpl~~~~~g~~~~vva~~gG~~~~p~-W~---~Nl~A~p~v~v~~----~g~~~~~~a~~~~~~ 98 (132)
T PF04075_consen 27 VLLLTTTGRKSGRPRRTPLVYVRDGGRLVVVASNGGAPRHPD-WY---RNLRANPEVTVEV----GGRRRRVRAREVTDD 98 (132)
T ss_dssp EEEEEEE-TTT-SEEEEEEEEEEETTEEEEE-SGGGCSSS-H-HH---HHHHHHSEEEEEE----TTEEEEEEEEEE-HH
T ss_pred EEEEEECCCCCCCeEEEEEEEEEeCCEEEEEEccCCCCCCCh-hH---HhhhhCCcEEEEE----CCEEEEEEEEEcCch
Confidence 67888887 78999 333433 222 22 78999999888 3 223667788999998
Q ss_pred HHHHHHh
Q 036952 213 ESEQYFH 219 (311)
Q Consensus 213 es~~yf~ 219 (311)
|-++.|.
T Consensus 99 er~~~~~ 105 (132)
T PF04075_consen 99 ERARLWA 105 (132)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888873
No 32
>PF04250 DUF429: Protein of unknown function (DUF429); InterPro: IPR007362 This is a family of uncharacterised proteins.
Probab=40.92 E-value=30 Score=30.77 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhccCCCCCCCCCCcEEEEEcCCCCCCCCC
Q 036952 5 PFDDLIKRLLCLHGYDQTRQKRPVIVSVDIPSGWHVEEG 43 (311)
Q Consensus 5 ~~~~~i~~in~~~~~~~~~~~~~~vvaiDiPSG~~~d~G 43 (311)
.+.+|++.+... . -+|+||+|-||..++|
T Consensus 29 ~~~~i~~~~~~~---------~-~~v~IDaPlgl~~~~~ 57 (209)
T PF04250_consen 29 SDEEILDWIESA---------P-AVVGIDAPLGLPNESG 57 (209)
T ss_pred CHHHHHHHhhcc---------C-cEEEEEcCcccCCCCC
Confidence 456677776643 4 7999999999943333
No 33
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism]
Probab=35.47 E-value=7.6 Score=36.35 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=35.5
Q ss_pred HHHHHcCCCCCCceEEEeeCCCCce--------------EEEeCCCCccccccccccccCCceeE
Q 036952 142 DDAIAAGLREPNAMALSTVGKDGKP--------------FWYSTSTGQVKSWCKRWLPVAVETSI 192 (311)
Q Consensus 142 ~~A~~~~~~~p~a~~LATv~~dG~P--------------~F~T~~~S~~K~~~~~eL~~NP~aal 192 (311)
+..+++-..++..++|||++.+|.| ++|-..-.+ =. .+|..||++++
T Consensus 84 ~~e~~afr~~~~sv~lat~~~~g~~~~syAp~~~~~~d~~iyis~~ar-h~---~N~~~~p~vs~ 144 (245)
T COG0748 84 TLEIEAFRLEFDSVALATLRERGLPRASYAPLYVDDGDYYIYISEIAR-HA---RNLGFNPKVSV 144 (245)
T ss_pred hHHHHHHHhccchHHHhhhhhcCCcCCCcCceEecCCceEEEEehHHH-Hh---hccCcCCchhh
Confidence 3334445568888999999999998 555555555 66 88999999888
No 34
>KOG3374 consensus Cellular repressor of transcription [Transcription]
Probab=27.77 E-value=3e+02 Score=24.85 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=31.3
Q ss_pred CceEEEeCCCCccccccccccccCCceeE-eee--cCe--------------eEEEEEEEEEeCh
Q 036952 164 GKPFWYSTSTGQVKSWCKRWLPVAVETSI-FTY--QST--------------TVRVEGSVEKVSD 211 (311)
Q Consensus 164 G~P~F~T~~~S~~K~~~~~eL~~NP~aal-f~w--~~r--------------QVRv~G~a~~l~~ 211 (311)
|+|+||-.---- -+ .++..||+|+| |-- +.+ -+.+.|++.++..
T Consensus 90 G~pyFyLt~Ld~-t~---~n~qkd~~atL~~s~~qt~~Ck~~g~DPm~PtC~~~mlsG~v~k~~~ 150 (210)
T KOG3374|consen 90 GRPYFYLTDLDF-TG---PNWQKDNKATLLFSDEQTLRCKEGGKDPMEPTCARSMLSGQVKKMDP 150 (210)
T ss_pred CceEEEeccCCC-CC---cccccCCceeEEeeccccchhhcCCCCCCCchhhhheecceEEEeCC
Confidence 455777333334 46 99999999999 876 222 3668999999974
No 35
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=26.08 E-value=1.5e+02 Score=23.48 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHcCCCCCCceEEEeeCCCCceEE
Q 036952 133 PINQFRKWFDDAIAAGLREPNAMALSTVGKDGKPFW 168 (311)
Q Consensus 133 P~~~f~~Wl~~A~~~~~~~p~a~~LATv~~dG~P~F 168 (311)
-++.|..||++-...... +.-++||.|+.||--++
T Consensus 54 s~~~i~~~f~~l~~~~~~-~~ri~LAiv~~DsTiVY 88 (101)
T PF09631_consen 54 SLEQIDEVFDSLPNPSGD-PKRILLAIVDDDSTIVY 88 (101)
T ss_dssp EHHHHHHHHHHHHHHCT----EEEEEEE-TTS-EEE
T ss_pred CHHHHHHHHHHhcccCCC-CcEEEEEEEcCCCCEEE
Confidence 467889999876544332 77899999999998733
No 36
>COG4923 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=24.02 E-value=84 Score=28.78 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=20.5
Q ss_pred chHHHHHHHHHhccCCCCCCCCCCcEEEEEcCCCCCC
Q 036952 4 PPFDDLIKRLLCLHGYDQTRQKRPVIVSVDIPSGWHV 40 (311)
Q Consensus 4 ~~~~~~i~~in~~~~~~~~~~~~~~vvaiDiPSG~~~ 40 (311)
+.|..+...|.++. .-+++.||||-|+..
T Consensus 37 ~ef~~f~dfl~~~~--------~d~~vlvDiPIGLp~ 65 (245)
T COG4923 37 EEFASFADFLAASP--------DDAVVLVDIPIGLPE 65 (245)
T ss_pred HHHHHHHHHHhcCC--------CCceEEEeccccCCc
Confidence 35566667766542 357999999999954
No 37
>PF14230 DUF4333: Domain of unknown function (DUF4333)
Probab=24.00 E-value=1.2e+02 Score=23.22 Aligned_cols=20 Identities=35% Similarity=0.353 Sum_probs=17.0
Q ss_pred CCcEEEEEcCCCCCCCCCCC
Q 036952 26 RPVIVSVDIPSGWHVEEGDI 45 (311)
Q Consensus 26 ~~~vvaiDiPSG~~~d~G~~ 45 (311)
+....+|+.|+++.++.|..
T Consensus 38 G~~~~sV~Cp~~~~~~~G~t 57 (80)
T PF14230_consen 38 GVTPVSVTCPGDLEVEVGAT 57 (80)
T ss_pred CCCCCEeECCCCCcccCCce
Confidence 66778899999999998863
No 38
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.52 E-value=1.7e+02 Score=25.02 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=58.3
Q ss_pred EEEeCCCCccccccccccccCCceeE-eee------cCeeEEEEEEEEEeChHHHHHHHhcCCcccccceecCCCCCCCC
Q 036952 167 FWYSTSTGQVKSWCKRWLPVAVETSI-FTY------QSTTVRVEGSVEKVSDEESEQYFHSRPRGSQIGAIVSKQSSVIP 239 (311)
Q Consensus 167 ~F~T~~~S~~K~~~~~eL~~NP~aal-f~w------~~rQVRv~G~a~~l~~~es~~yf~~rp~~sqi~a~~s~qs~~i~ 239 (311)
++.|+-.++ -+ +=+..|+.||. ..= +-+=|-..|+...++.+++++.
T Consensus 42 i~~T~e~Tr-Ha---~l~~~ns~VAgtv~~qsKtva~ikGVQfkge~~~l~~~q~~~A---------------------- 95 (145)
T COG3787 42 IILTEEKTR-HA---QLSGPNSAVAGTVAGQSKTVALIKGVQFKGEISRLSGEQSDAA---------------------- 95 (145)
T ss_pred EEEeccchh-HH---HhhCCCCceeeEeccCceeeeeeeeeeeeeeehhhhcchHHHH----------------------
Confidence 566888888 88 77899999999 443 5677788899998887665421
Q ss_pred ChHHHHHHHHHHHhhccCCCCCCCCCCeeEEEEEceEEEEEeCCCCCCcceEEEeec
Q 036952 240 GRHVLYQQYKELEEKFSDWSLIPKPEFWGGYRLKPELFEFWQGQTSRLHDRLQYSPQ 296 (311)
Q Consensus 240 ~r~~l~~~~~~~~~~~~~~~~~p~p~~w~gy~l~P~~iEfwq~~~~r~H~R~~y~r~ 296 (311)
.+.+..+|+- -+-..-..|.|.+++|-| ....-.+-..+.|.|.
T Consensus 96 --------rk~Y~~rfp~----akvd~a~vwqleL~~ikf-tdNaLG~~kklew~r~ 139 (145)
T COG3787 96 --------RKAYNRRFPV----AKVDSAPVWQLELDEIKF-TDNALGFGKKLEWLRG 139 (145)
T ss_pred --------HHHHhccCch----hhcccCceEEeeeeeEEe-ecccccccceEEEecc
Confidence 1223334431 111224577889988888 3333335566666653
No 39
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=22.09 E-value=35 Score=25.49 Aligned_cols=13 Identities=46% Similarity=1.086 Sum_probs=8.4
Q ss_pred cEEEEEcCCCCCC
Q 036952 28 VIVSVDIPSGWHV 40 (311)
Q Consensus 28 ~vvaiDiPSG~~~ 40 (311)
..+++++|.||.+
T Consensus 24 v~~~l~~P~GW~~ 36 (78)
T PF10633_consen 24 VSLSLSLPEGWTV 36 (78)
T ss_dssp -EEEEE--TTSE-
T ss_pred EEEEEeCCCCccc
Confidence 5789999999983
Done!