BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036953
(792 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 94 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 152
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 90 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 149 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 194
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 195 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 253
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 254 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 215 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 272
Query: 152 ILASGSLDHEVRLWDANTSECIGSCDFYRPIA-SIAFHAEGELLAVAS 198
+ SGS D+ V +W+ T E + + + S A H ++A A+
Sbjct: 273 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 96 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 154
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 192
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 92 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 151 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 196
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 197 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 255
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 256 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 217 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 274
Query: 152 ILASGSLDHEVRLWDANTSECIGSCDFYRPIA-SIAFHAEGELLAVAS 198
+ SGS D+ V +W+ T E + + + S A H ++A A+
Sbjct: 275 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 136
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 74 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 133 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 178
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 237
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 199 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIV 278
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 136
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 74 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 133 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 178
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 237
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 199 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIV 278
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 77 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 135
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 173
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 73 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 131
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 132 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 177
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 178 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 236
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 237 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 275
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 198 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 255
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 256 WIVSGSEDNLVYIWNLQTKEIV 277
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 89 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 147
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 185
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 85 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 143
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 144 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 189
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 190 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 248
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 249 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 287
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 210 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 267
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 268 WIVSGSEDNLVYIWNLQTKEIV 289
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 78 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 136
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 74 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 132
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 133 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 178
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 237
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 238 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 199 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 256
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIV 278
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 68 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 126
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 164
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 64 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 122
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 123 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 168
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 169 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 227
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 228 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 266
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 189 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 246
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 247 WIVSGSEDNLVYIWNLQTKEIV 268
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 130
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 68 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 127 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 172
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 231
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 193 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIV 272
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 71 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 129
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 167
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 67 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 125
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 126 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 171
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 172 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 230
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 231 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 269
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 192 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 249
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 250 WIVSGSEDNLVYIWNLQTKEIV 271
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 72 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 130
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 68 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 126
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 127 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 172
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 231
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 193 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 250
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIV 272
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 73 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 131
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 169
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 69 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 127
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 128 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 173
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 174 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 232
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 233 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 271
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 194 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 251
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 252 WIVSGSEDNLVYIWNLQTKEIV 273
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 133
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 71 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 130 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 175
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 234
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 196 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIV 275
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 133
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 71 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 130 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 175
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 234
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 196 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIV 275
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 133
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T +C+ + + P++++ F+ +G L+ +S
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 71 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G + L+ L A P+ A F+ DG + S+ D
Sbjct: 130 FDESVRIWDVKTG-------KCLKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 175
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 234
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 196 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIV 275
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 133
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T C+ + + P++++ F+ +G L+ +S
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 71 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G+ L+ L A P+ A F+ DG + S+ D
Sbjct: 130 FDESVRIWDVKTGMC-------LKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 175
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD+ ++LWD + +C+ +
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYT 234
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+T+K+ D G CLK +GH+ + + F +
Sbjct: 196 PPVSFVK--FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIV 275
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A+S D L S D T+KI D +G CLK L GH + F+P +S ++ SGS D
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDES 133
Query: 162 VRLWDANTSECIGSCDFYR-PIASIAFHAEGELLAVAS 198
VR+WD T C+ + + P++++ F+ +G L+ +S
Sbjct: 134 VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 24/219 (10%)
Query: 1 MTGLSWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP 60
++ ++W D N L S S+ + +VS + + + YV + S L G
Sbjct: 71 ISDVAWSSDSNLLVS-ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGS 129
Query: 61 SDSSVR--DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHT 118
D SVR D K G+ L+ L A P+ A F+ DG + S+ D
Sbjct: 130 FDESVRIWDVKTGMC-------LKTLPAHSDPVS-------AVHFNRDGSLIVSSSYDGL 175
Query: 119 VKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC- 176
+I D +G CLK L P V+F P ILA+ +LD++++LWD + +C+ +
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TLDNDLKLWDYSKGKCLKTYT 234
Query: 177 ----DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211
+ Y A+ + +++ + + +YIW KE
Sbjct: 235 GHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKE 273
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV--RFHPLRSE 151
PP S + FSP+G+ + + D+ +K+ D G CLK +GH+ + + F +
Sbjct: 196 PPVSFVK--FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGK 253
Query: 152 ILASGSLDHEVRLWDANTSECI 173
+ SGS D+ V +W+ T E +
Sbjct: 254 WIVSGSEDNMVYIWNLQTKEIV 275
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
AFSPDG+T+AS D TVK+ + + G L+ L+GH + W V F P + +AS S D
Sbjct: 105 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKT 162
Query: 162 VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVL 220
V+LW+ N + +AF +G+ +A AS K + +W N + +L
Sbjct: 163 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LL 214
Query: 221 KT----RRSLRAVHFHP 233
+T S+R V F P
Sbjct: 215 QTLTGHSSSVRGVAFSP 231
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
AFSPDG+T+AS D TVK+ + + G L+ L+GH + W V F P + +AS S D
Sbjct: 392 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKT 449
Query: 162 VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVL 220
V+LW+ N + +AF +G+ +A AS K + +W N + +L
Sbjct: 450 VKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LL 501
Query: 221 KT----RRSLRAVHFHP 233
+T S+R V F P
Sbjct: 502 QTLTGHSSSVRGVAFSP 518
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS 150
L S AFSPDG+T+AS D TVK+ + + G L+ L+GH + W V F P
Sbjct: 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP-DG 192
Query: 151 EILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNN 209
+ +AS S D V+LW+ N + +AF +G+ +A AS K + +W N
Sbjct: 193 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 252
Query: 210 K 210
+
Sbjct: 253 Q 253
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 15/137 (10%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
AF PDG+T+AS D TVK+ + + G L+ L+GH + W V F P + +AS S D
Sbjct: 269 AFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASDDKT 326
Query: 162 VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVL 220
V+LW+ N + +AF +G+ +A AS K + +W N + +L
Sbjct: 327 VKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--------LL 378
Query: 221 KT----RRSLRAVHFHP 233
+T S+R V F P
Sbjct: 379 QTLTGHSSSVRGVAFSP 395
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 66/130 (50%), Gaps = 4/130 (3%)
Query: 83 HLSAKYCPLVPPPRSTI-AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141
H+ K + S++ AFSPDG+T+AS D TVK+ + + G L+ L+GH + W
Sbjct: 3 HMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVW 61
Query: 142 VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK 201
V F P + +AS S D V+LW+ N + +AF +G+ +A AS K
Sbjct: 62 GVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 202 -LYIWPYNNK 210
+ +W N +
Sbjct: 121 TVKLWNRNGQ 130
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS 150
L S AFSPDG+T+AS D TVK+ + + G L+ L+GH + W V F P
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSP-DG 356
Query: 151 EILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNN 209
+ +AS S D V+LW+ N + +AF +G+ +A AS K + +W N
Sbjct: 357 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 416
Query: 210 K 210
+
Sbjct: 417 Q 417
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
AFSPDG+T+AS D TVK+ + + G L+ L+GH + V F P + +AS S D
Sbjct: 474 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKT 531
Query: 162 VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIW 205
V+LW+ N + +AF +G+ +A AS K + +W
Sbjct: 532 VKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS 150
L S AFSPD +T+AS D TVK+ + + G L+ L+GH + V F P
Sbjct: 422 LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP-DG 479
Query: 151 EILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNN 209
+ +AS S D V+LW+ N + +AF +G+ +A AS K + +W N
Sbjct: 480 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539
Query: 210 K 210
+
Sbjct: 540 Q 540
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIID 123
L S AFSPDG+T+AS D TVK+ +
Sbjct: 545 LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD 159
+ FSPDG+ LA+ D ++I D + + +L GH + + + + P + L SGS D
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGD 186
Query: 160 HEVRLWDANTSECIGSCDFYRPIASIAFH-AEGELLAVAS 198
VR+WD T +C + + ++A +G+ +A S
Sbjct: 187 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS 226
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 17/128 (13%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
+ P G L S GD TV+I D +TG C LS V P + +A+GSLD V
Sbjct: 173 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-TVAVSPGDGKYIAAGSLDRAV 231
Query: 163 RLWDANTSECIGSCDFYRP--------IASIAFHAEGELLAVASG---HKLYIWPY---N 208
R+WD+ T + D + S+ F +G+ +V SG + +W N
Sbjct: 232 RVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ--SVVSGSLDRSVKLWNLQNAN 289
Query: 209 NKEEASSP 216
NK ++ +P
Sbjct: 290 NKSDSKTP 297
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 69/149 (46%), Gaps = 31/149 (20%)
Query: 101 AAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVL-------SGHRRTPWVVRFHPLRSEI 152
A SP DG+ +A+ D V++ D +TG ++ L +GH+ + + V F +
Sbjct: 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-TRDGQS 270
Query: 153 LASGSLDHEVRLWDA------------NTSEC----IGSCDFYRPIASIAFHAEGELLAV 196
+ SGSLD V+LW+ N+ C IG DF +A+ + +L+
Sbjct: 271 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT--QNDEYILSG 328
Query: 197 ASGHKLYIWPYNNKEEASSPIIVLKTRRS 225
+ + W +++ +P+++L+ R+
Sbjct: 329 SKDRGVLFW----DKKSGNPLLMLQGHRN 353
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 77/173 (44%), Gaps = 18/173 (10%)
Query: 54 KLKTCGPSDSSV-RDAK----------RGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAA 102
+L C P S V R AK R + W+ +++++LS + P + A
Sbjct: 565 QLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSR--LVVRPHTDAVYHAC 622
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
FS DG+ +AS D T+++ +TG L + H F S I A+ S D +V
Sbjct: 623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKV 681
Query: 163 RLWDANTSECIGSCDFY-RPIASIAFHAEGELLAVASGHK---LYIWPYNNKE 211
++WD+ T + + + D + + F + L +A+G L +W N KE
Sbjct: 682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 23/199 (11%)
Query: 22 RRRARNVSRLLAHREISPKTKYVPKRQWV-DASKLKTCGPSDS-SVRDAKRGLVSWVEAE 79
++ +N+SRL+ + P T V + D ++ +CG + V A+ G E
Sbjct: 600 KKTIKNLSRLV----VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-------E 648
Query: 80 SLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRT 139
L + A + AFS D +A+ D VKI D TG + H
Sbjct: 649 KLLDIKAH-------EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ 701
Query: 140 PWVVRFHPLRSEIL-ASGSLDHEVRLWDANTSECIGSCDFY-RPIASIAFHAEGELLAVA 197
F + +L A+GS D ++LWD N EC + + + F + ELLA
Sbjct: 702 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASC 761
Query: 198 SGH-KLYIWPYNNKEEASS 215
S L +W + E S
Sbjct: 762 SADGTLRLWDVRSANERKS 780
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
F+ DG+TL S+ D +++ + QTG+ + L H+ T V F L+ L S S D V
Sbjct: 1011 FTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQET--VKDFRLLQDSRLLSWSFDGTV 1067
Query: 163 RLWDANT 169
++W+ T
Sbjct: 1068 KVWNVIT 1074
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASG 156
+ ++ A S D +ST D T KI + L L GH F L +LA+G
Sbjct: 1087 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF-SLDGILLATG 1145
Query: 157 SLDHEVRLWDANTSECIGSC 176
+ E+R+W+ + + + SC
Sbjct: 1146 DDNGEIRIWNVSDGQLLHSC 1165
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 7/149 (4%)
Query: 67 DAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT 126
D R + W+ +++++LS + P + A FS DG+ +AS D T+++ +T
Sbjct: 596 DTGRLYLEWINKKTIKNLSR--LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET 653
Query: 127 GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY-RPIASI 185
G L + H F S I A+ S D +V++WD+ T + + + D + +
Sbjct: 654 GEKLLDIKAHEDEVLCCAFSSDDSYI-ATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC 712
Query: 186 AFHAEGELLAVASGHK---LYIWPYNNKE 211
F + L +A+G L +W N KE
Sbjct: 713 HFTNKSNHLLLATGSNDFFLKLWDLNQKE 741
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 23/199 (11%)
Query: 22 RRRARNVSRLLAHREISPKTKYVPKRQWV-DASKLKTCGPSDS-SVRDAKRGLVSWVEAE 79
++ +N+SRL+ + P T V + D ++ +CG + V A+ G E
Sbjct: 607 KKTIKNLSRLV----VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG-------E 655
Query: 80 SLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRT 139
L + A + AFS D +A+ D VKI D TG + H
Sbjct: 656 KLLDIKAH-------EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQ 708
Query: 140 PWVVRFHPLRSEIL-ASGSLDHEVRLWDANTSECIGSCDFY-RPIASIAFHAEGELLAVA 197
F + +L A+GS D ++LWD N EC + + + F + ELLA
Sbjct: 709 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASC 768
Query: 198 SGH-KLYIWPYNNKEEASS 215
S L +W + E S
Sbjct: 769 SADGTLRLWDVRSANERKS 787
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
F+ DG+TL S+ D +++ + QTG+ + L H+ T V F L+ L S S D V
Sbjct: 1018 FTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQET--VKDFRLLQDSRLLSWSFDGTV 1074
Query: 163 RLWDANT 169
++W+ T
Sbjct: 1075 KVWNVIT 1081
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASG 156
+ ++ A S D +ST D T KI + L L GH F L +LA+G
Sbjct: 1094 TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF-SLDGILLATG 1152
Query: 157 SLDHEVRLWDANTSECIGSC 176
+ E+R+W+ + + + SC
Sbjct: 1153 DDNGEIRIWNVSDGQLLHSC 1172
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGN--CLKVLS-GHRRTPWVVRFHPLRSEILASGSL 158
A++P G LAS GD ++I + + C VLS GH+RT V + P LAS S
Sbjct: 23 AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC-GNYLASASF 81
Query: 159 DHEVRLWDANTS--ECIGSCDFYR-PIASIAFHAEGELLAVASGHK-LYIWPYNNKEEAS 214
D +W N EC+ + + + + S+A+ G LLA S K +++W + ++E
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 215 SPIIVLKTRRSLRAVHFHP 233
++ + ++ V +HP
Sbjct: 142 CVSVLNSHTQDVKHVVWHP 160
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHPLRSEILASGSLDH 160
+ P LAS D TVK+ + + C L GH T W + F P + LAS S D
Sbjct: 158 WHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDR 216
Query: 161 EVRLW 165
VR+W
Sbjct: 217 TVRIW 221
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS-EILASGSL 158
+ + P+G + S D T+K+ + QTG C+K +GHR WV P + ++AS S
Sbjct: 197 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMVRPNQDGTLIASCSN 254
Query: 159 DHEVRLWDANTSEC 172
D VR+W T EC
Sbjct: 255 DQTVRVWVVATKEC 268
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 3/112 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
+F G+ LAS D T+K+ D Q C++ + GH V P + + S S D
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKT 215
Query: 162 VRLWDANTSECIGSCDFYRP-IASIAFHAEGELLAVASGHK-LYIWPYNNKE 211
+++W+ T C+ + +R + + + +G L+A S + + +W KE
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE 267
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
F P + S D T+K+ D +TG+ + L GH + + F ++LAS S D +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH-SGKLLASCSADMTI 174
Query: 163 RLWDANTSECIGSCDFY-RPIASIAFHAEGELLAVASGHK-LYIW 205
+LWD ECI + + ++S++ G+ + AS K + +W
Sbjct: 175 KLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 107 GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWV--VRFHPLRSEILASGSLDHEVRL 164
G L S D T+K+ D TG CL L GH WV V FH IL+ D +R+
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGH--DNWVRGVLFHSGGKFILSCAD-DKTLRV 364
Query: 165 WDANTSECIGSCDFYRP-IASIAFH 188
WD C+ + + + + S+ FH
Sbjct: 365 WDYKNKRCMKTLNAHEHFVTSLDFH 389
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 28/110 (25%)
Query: 133 LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRP-------IASI 185
LSGHR V FHP+ S ++ S S D +++WD T DF R + I
Sbjct: 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETG------DFERTLKGHTDSVQDI 156
Query: 186 AFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPH 234
+F G+LLA S + +W + E +R +H H H
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQGFE-------------CIRTMHGHDH 193
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
F G+ + S D T+++ D + C+K L+ H + FH + + +GS+D V
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT-APYVVTGSVDQTV 404
Query: 163 RLWD 166
++W+
Sbjct: 405 KVWE 408
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 74 SWVEAESLRHLSAKYC--PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK 131
SW + L +L C + + ++ AFSPD R + S D+ +++ + + G C+
Sbjct: 86 SWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMH 144
Query: 132 VLSGHRRTPWV--VRFHP-LRSEILASGSLDHEVRLWDANTSECIGSCDFY-RPIASIAF 187
LS T WV VRF P L + ++ SG D+ V++WD T + + + S+
Sbjct: 145 TLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTV 204
Query: 188 HAEGELLA 195
+G L A
Sbjct: 205 SPDGSLCA 212
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A S +G S DH++++ + Q G C GH + V F P +I+ SG D+
Sbjct: 74 ALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV-SGGRDNA 132
Query: 162 VRLWDANTSECI 173
+R+W+ EC+
Sbjct: 133 LRVWNVK-GECM 143
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 107 GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166
G + S D+T+K+ TG CL+ L GH W + +R I+ SGS D +++W+
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ---MRDNIIISGSTDRTLKVWN 185
Query: 167 ANTSECI 173
A T ECI
Sbjct: 186 AETGECI 192
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLW 165
DGR + S D VK+ D +T CL L GH + ++F + + SGSLD +R+W
Sbjct: 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH---VVSGSLDTSIRVW 304
Query: 166 DANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIW 205
D T CI + ++ + S + L++ + + IW
Sbjct: 305 DVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIW 344
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLW 165
DG + S D ++++ D +TGNC+ L+GH+ + L+ IL SG+ D V++W
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS---LTSGMELKDNILVSGNADSTVKIW 344
Query: 166 DANTSECI 173
D T +C+
Sbjct: 345 DIKTGQCL 352
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 116 DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173
D T+K+ + +TG C+ L GH T VR L + + SGS D +R+WD T +C+
Sbjct: 178 DRTLKVWNAETGECIHTLYGHTST---VRCMHLHEKRVVSGSRDATLRVWDIETGQCL 232
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 110 LASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169
L S + D TVKI D +TG CL+ L G + V + + S D V+LWD T
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT 391
Query: 170 SECI 173
E I
Sbjct: 392 GEFI 395
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 116 DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173
D T+++ D +TG CL VL GH V++ R + SG+ D V++WD T C+
Sbjct: 218 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRR---VVSGAYDFMVKVWDPETETCL 272
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 7/143 (4%)
Query: 73 VSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV 132
+ W+ +++ +LS + P + A FS DG+ +AS D T+++ +TG L
Sbjct: 601 LEWINKKNITNLSR--LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLE 658
Query: 133 LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY-RPIASIAFHAEG 191
+ H F +A+ S+D +V++W++ T E + + D + + F
Sbjct: 659 IKAHEDEVLCCAF-STDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSS 717
Query: 192 ELLAVASGHK---LYIWPYNNKE 211
L +A+G L +W N KE
Sbjct: 718 HHLLLATGSSDCFLKLWDLNQKE 740
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF----HPLRSEIL 153
+ AFS D R +A+ D VKI + TG + H F H L +L
Sbjct: 666 VLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHL---LL 722
Query: 154 ASGSLDHEVRLWDANTSEC 172
A+GS D ++LWD N EC
Sbjct: 723 ATGSSDCFLKLWDLNQKEC 741
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
F+ D +TL S+ D +++ + Q C+ L GH+ T V F L++ L S S D V
Sbjct: 1017 FTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQET--VKDFRLLKNSRLLSWSFDGTV 1073
Query: 163 RLWDANT 169
++W+ T
Sbjct: 1074 KVWNIIT 1080
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 59/152 (38%), Gaps = 14/152 (9%)
Query: 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASG 156
+ ++ S D +ST D T KI L L GH F + S +LA+G
Sbjct: 1093 TVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAF-SVDSTLLATG 1151
Query: 157 SLDHEVRLWDANTSECIGSCDFYRP---------IASIAFHAEGELLAVASGHKLYIWPY 207
+ E+R+W+ + E + C + + F +G++L A G YI +
Sbjct: 1152 DDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG---YIKWW 1208
Query: 208 NNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239
N SS +L+ +H P +V
Sbjct: 1209 NVVTGESSQTFY-TNGTNLKKIHVSPDFKTYV 1239
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD 159
SP + +A + ++I++ + H++T W ++F + L S S D
Sbjct: 972 CCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTA-DEKTLISSSDD 1030
Query: 160 HEVRLWDANTSECI 173
E+++W+ +CI
Sbjct: 1031 AEIQVWNWQLDKCI 1044
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 18/111 (16%)
Query: 119 VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA-NTSECIGSCD 177
V++ D ++G+C +L GHR+ V + P ILA+ S D V+LWD S C+ + D
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLD 227
Query: 178 FYR----------------PIASIAFHAEG-ELLAVASGHKLYIWPYNNKE 211
+ + + F ++G LL V + +++ +W +N E
Sbjct: 228 QHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 136 HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIAS 184
HR + V+++P + + S S D +++WD NT + +F + S
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYS 146
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLW 165
D + + S GD T+K+ + T ++ L+GH+R +++ R ++ SGS D+ +RLW
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLW 321
Query: 166 DANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIW 205
D C+ + + + +++ A K+ +W
Sbjct: 322 DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVW 361
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 101 AAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH 160
A R + S D+T+++ D + G CL+VL GH +RF R + SG+ D
Sbjct: 300 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR---IVSGAYDG 356
Query: 161 EVRLWD 166
++++WD
Sbjct: 357 KIKVWD 362
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLW 165
D + + S D+T+KI D T C ++L+GH + +++ ++ +GS D VR+W
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVW 198
Query: 166 DANTSECIGSCDFY-RPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRR 224
D NT E + + + + + F+ G ++ + + +W + + + +++ R
Sbjct: 199 DVNTGEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 257
Query: 225 SLRAVHF 231
++ V F
Sbjct: 258 AVNVVDF 264
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNC----LKVLSGHRRTPWVVRFHPLRSEILASG-- 156
++PDGR LAS D+ V + G L+ + H+ V + P +S +LA+G
Sbjct: 249 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 308
Query: 157 SLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG---HKLYIWPY 207
+ D +R+W+ + C+ + D + + SI + + L G ++L IW Y
Sbjct: 309 TSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 362
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNC----LKVLSGHRRTPWVVRFHPLRSEILASG-- 156
++PDGR LAS D+ V + G L+ + H+ V + P +S +LA+G
Sbjct: 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 297
Query: 157 SLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG---HKLYIWPY 207
+ D +R+W+ + C+ + D + + SI + + L G ++L IW Y
Sbjct: 298 TSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 351
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNC----LKVLSGHRRTPWVVRFHPLRSEILASG-- 156
++PDGR LAS D+ V + G L+ + H+ V + P +S +LA+G
Sbjct: 158 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG 217
Query: 157 SLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG---HKLYIWPY 207
+ D +R+W+ + C+ + D + + SI + + L G ++L IW Y
Sbjct: 218 TSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKY 271
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 105 PDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRL 164
PD + + D T+KI D QT +C+ L GH FHP I+ SGS D +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 165 WDANTSECIGSCDF-YRPIASIAFHAEGELLAVASG 199
W+++T + + + IA H G +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 99 IAAAFSP-DGRTLASTHGDHTVKIIDC-QTGNCLKVLSGHRRTPWVVRFHPLRSE-ILAS 155
+ AF+P D T AS D TVK+ Q+ + +G R V ++PL + + +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 156 GSLDHEVRLWDANTSECIGSCDFYRPIASIA-FH 188
S D +++WD T C+ + + + S A FH
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCL-KVLSGHRRTPWVVRFHPLRSEILASGSL 158
+ A P + S D TVK+ + + L + GH V F+P ASG L
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 159 DHEVRLW 165
D V++W
Sbjct: 162 DRTVKVW 168
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 105 PDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRL 164
PD + + D T+KI D QT +C+ L GH FHP I+ SGS D +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 165 WDANTSECIGSCDF-YRPIASIAFHAEGELLAVASG 199
W+++T + + + IA H G +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 99 IAAAFSP-DGRTLASTHGDHTVKIIDC-QTGNCLKVLSGHRRTPWVVRFHPLRSE-ILAS 155
+ AF+P D T AS D TVK+ Q+ + +G R V ++PL + + +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 156 GSLDHEVRLWDANTSECIGSCDFYRPIASIA-FH 188
S D +++WD T C+ + + + S A FH
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCL-KVLSGHRRTPWVVRFHPLRSEILASGSL 158
+ A P + S D TVK+ + + L + GH V F+P ASG L
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 159 DHEVRLW 165
D V++W
Sbjct: 162 DRTVKVW 168
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILAS 155
+ ++ A+SPDG+ LAS D + I D TG L L GH + F P S++L +
Sbjct: 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVT 223
Query: 156 GSLDHEVRLWDANTSECIGS 175
S D ++++D + G+
Sbjct: 224 ASDDGYIKIYDVQHANLAGT 243
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
FSPD + L + D +KI D Q N LSGH V F P + S S D V
Sbjct: 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTH-FVSSSSDKSV 272
Query: 163 RLWDANTSECIGS-CDFYRPIASIAFHAEG-ELLAVASGHKLYIW 205
++WD T C+ + D + + ++ G ++++V +++I+
Sbjct: 273 KVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 105 PDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRL 164
PD + + D T+KI D QT +C+ L GH FHP I+ SGS D +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 165 WDANTSECIGSCDF-YRPIASIAFHAEGELLAVASG 199
W+++T + + + IA H G +ASG
Sbjct: 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 99 IAAAFSP-DGRTLASTHGDHTVKIIDC-QTGNCLKVLSGHRRTPWVVRFHPLRSE-ILAS 155
+ AF+P D T AS D TVK+ Q+ + +G R V ++PL + + +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 156 GSLDHEVRLWDANTSECIGSCDFYRPIASIA-FH 188
S D +++WD T C+ + + + S A FH
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 19/125 (15%)
Query: 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAA 101
K++ ++ W+ G D +R + ++ E + A P +
Sbjct: 62 KFIARKNWI------IVGSDDFRIR-----VFNYNTGEKVVDFEAH-------PDYIRSI 103
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCL-KVLSGHRRTPWVVRFHPLRSEILASGSLDH 160
A P + S D TVK+ + + L + GH V F+P ASG LD
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 161 EVRLW 165
V++W
Sbjct: 164 TVKVW 168
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 105 PDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRL 164
PD + + D T+KI D QT +C+ L GH FHP I+ SGS D +++
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKI 254
Query: 165 WDANT 169
W+++T
Sbjct: 255 WNSST 259
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 99 IAAAFSP-DGRTLASTHGDHTVKIIDC-QTGNCLKVLSGHRRTPWVVRFHPLRSE-ILAS 155
+ AF+P D T AS D TVK+ Q+ + +G R V ++PL + + +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 156 GSLDHEVRLWDANTSECIGSCDFYRPIASIA-FH 188
S D +++WD T C+ + + + S A FH
Sbjct: 204 ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 19/125 (15%)
Query: 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAA 101
K++ ++ W+ G D +R + ++ E + A P +
Sbjct: 62 KFIARKNWI------IVGSDDFRIR-----VFNYNTGEKVVDFEAH-------PDYIRSI 103
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCL-KVLSGHRRTPWVVRFHPLRSEILASGSLDH 160
A P + S D TVK+ + + L + GH V F+P ASG LD
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 161 EVRLW 165
V++W
Sbjct: 164 TVKVW 168
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 119 VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI---GS 175
++II+ T C+K GH ++FHP +L S S DH +RLW+ T + G
Sbjct: 133 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 192
Query: 176 CDFYR-PIASIAFHAEGE-LLAVASGHKLYIWPYNNK 210
+ +R + S + GE +++ H L +W N+K
Sbjct: 193 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 229
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 103 FSP-DGRTLASTHGDHTVKIIDCQTGNCLKVL---SGHRRTPWVVRFHPLRSEILASGSL 158
F P D L S DH +++ + QT + + GHR + L +I++ G +
Sbjct: 159 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG-M 217
Query: 159 DHEVRLWDANTSECIGS 175
DH ++LW N+ + +
Sbjct: 218 DHSLKLWRINSKRMMNA 234
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
A S + S+ D T+++ D +TG K GH+ + V F P +IL++G+ + E
Sbjct: 83 ALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-ERE 141
Query: 162 VRLWDANTSECIGSCDF 178
++LW+ +G C F
Sbjct: 142 IKLWN-----ILGECKF 153
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 119 VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI---GS 175
++II+ T C+K GH ++FHP +L S S DH +RLW+ T + G
Sbjct: 92 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 151
Query: 176 CDFYR-PIASIAFHAEGE-LLAVASGHKLYIWPYNNK 210
+ +R + S + GE +++ H L +W N+K
Sbjct: 152 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 188
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 103 FSP-DGRTLASTHGDHTVKIIDCQTGNCLKVL---SGHRRTPWVVRFHPLRSEILASGSL 158
F P D L S DH +++ + QT + + GHR + L +I++ G +
Sbjct: 118 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG-M 176
Query: 159 DHEVRLWDANTSECIGS 175
DH ++LW N+ + +
Sbjct: 177 DHSLKLWRINSKRMMNA 193
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 119 VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI---GS 175
++II+ T C+K GH ++FHP +L S S DH +RLW+ T + G
Sbjct: 97 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 156
Query: 176 CDFYR-PIASIAFHAEGE-LLAVASGHKLYIWPYNNK 210
+ +R + S + GE +++ H L +W N+K
Sbjct: 157 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 193
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 103 FSP-DGRTLASTHGDHTVKIIDCQTGNCLKVL---SGHRRTPWVVRFHPLRSEILASGSL 158
F P D L S DH +++ + QT + + GHR + L +I++ G +
Sbjct: 123 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG-M 181
Query: 159 DHEVRLWDANTSECIGS 175
DH ++LW N+ + +
Sbjct: 182 DHSLKLWRINSKRMMNA 198
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 119 VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI---GS 175
++II+ T C+K GH ++FHP +L S S DH +RLW+ T + G
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 176 CDFYR-PIASIAFHAEGE-LLAVASGHKLYIWPYNNK 210
+ +R + S + GE +++ H L +W N+K
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 192
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 103 FSP-DGRTLASTHGDHTVKIIDCQTGNCLKVL---SGHRRTPWVVRFHPLRSEILASGSL 158
F P D L S DH +++ + QT + + GHR + L +I++ G +
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG-M 180
Query: 159 DHEVRLWDANTSECIGS 175
DH ++LW N+ + +
Sbjct: 181 DHSLKLWRINSKRMMNA 197
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)
Query: 119 VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI---GS 175
++II+ T C+K GH ++FHP +L S S DH +RLW+ T + G
Sbjct: 96 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG 155
Query: 176 CDFYR-PIASIAFHAEGE-LLAVASGHKLYIWPYNNK 210
+ +R + S + GE +++ H L +W N+K
Sbjct: 156 VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSK 192
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 103 FSP-DGRTLASTHGDHTVKIIDCQTGNCLKVL---SGHRRTPWVVRFHPLRSEILASGSL 158
F P D L S DH +++ + QT + + GHR + L +I++ G +
Sbjct: 122 FHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG-M 180
Query: 159 DHEVRLWDANTSECIGS 175
DH ++LW N+ + +
Sbjct: 181 DHSLKLWRINSKRMMNA 197
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILAS--GSLD 159
A+ DG LAS D+ V+I D ++ + H V + P +S +LA+ G++D
Sbjct: 224 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD 283
Query: 160 HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG---HKLYIWPY 207
++ W+A T + + D + S+ + + + G + L IW Y
Sbjct: 284 KQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY 334
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 87 KYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH 146
K L R ++ +G L S D + + G L L GH T W +
Sbjct: 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVD 83
Query: 147 PLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAF 187
++ +GS D+ ++LWD + +C+ + P+ + F
Sbjct: 84 CF-TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEF 123
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
FS GR L + + D+T+ + D G+ + +L GH +R P SGS DH +
Sbjct: 292 FSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTL 350
Query: 163 RLW 165
R+W
Sbjct: 351 RVW 353
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS-EILASGSL 158
A +F+ + + GD T + D ++G L+ GH + P + SG
Sbjct: 159 ACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGC 218
Query: 159 DHEVRLWDANTSECIGSCDFYRP-IASIAFHAEGELLAVAS 198
D + +WD + +C+ + + + + S+ ++ G+ A S
Sbjct: 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGS 259
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 104 SPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVR 163
S G T S D + D ++G C++ H VR++P + ASGS D R
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYP-SGDAFASGSDDATCR 265
Query: 164 LWD 166
L+D
Sbjct: 266 LYD 268
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD 159
A A SPD + S D + + D ++ GH + ++ L +G LD
Sbjct: 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK-LWTGGLD 204
Query: 160 HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVA 197
+ VR WD + DF I S+ + GE LAV
Sbjct: 205 NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVG 242
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 107 GRTLASTHGDHTVKIIDCQTGNCLKV--LSGHRRTPWVVRF-HPLRSEILASGSLDHEVR 163
G LA+ D +VKI D + G + + L GH W V + HP+ ILAS S D +V
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVI 84
Query: 164 LW 165
+W
Sbjct: 85 IW 86
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS----GHRRTPWVVRFH 146
V + ++ AFS D R + S D T+K+ + G C +S GHR VRF
Sbjct: 468 FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFS 526
Query: 147 PLRSE-ILASGSLDHEVRLWDANTSEC 172
P + + S S D V++W N S C
Sbjct: 527 PNTLQPTIVSASWDKTVKVW--NLSNC 551
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 103 FSPDGR--TLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH 160
FSP+ T+ S D TVK+ + L+GH V P S + ASG D
Sbjct: 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDG 583
Query: 161 EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNK 210
V LWD + + S + I ++ F L A+ H + IW +K
Sbjct: 584 VVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESK 633
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 128 NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIA---- 183
N + S H + V+F+ + +LASG + E+ +WD N +C S Y P+
Sbjct: 104 NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN--KCTESPSNYTPLTPGQS 161
Query: 184 --------SIAFHAEGELLAVASGHKLY--IWPYNNKEEA-----SSPIIVLKTRRSLRA 228
S+A++ + ++G + IW K+E +SP +K + L
Sbjct: 162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK--QQLSV 219
Query: 229 VHFHPHAAPFVLTAEVNDLDSS 250
V +HP + V TA +D D S
Sbjct: 220 VEWHPKNSTRVATATGSDNDPS 241
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 79 ESLRHLSAKYCPLVPPPRST-------IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK 131
E++ L Y P P R+T + + + + D +++ D L
Sbjct: 97 ENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLL 156
Query: 132 VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172
LSGH W +++ IL SGS D VR+WD C
Sbjct: 157 QLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCC 195
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 104 SPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVR 163
S G + S D+T+ + D CL +LSGH + + R + S S+D +R
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIR 335
Query: 164 LWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNN 209
+WD E + + + + + ++ L++ A+ + W N+
Sbjct: 336 IWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 107 GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS-EILASGSLDHEVRLW 165
G L S D TV++ D + G C V GH T + ++ + + +GS D+ + +W
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 107 GRTLASTHGDHTVKI--IDCQTGNCLKVLSGHRRTPWVVRF-HPLRSEILASGSLDHEVR 163
G+ LA+ D T+KI ++ +T + L+GH W V + HP ILAS S D +V
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 164 LW 165
+W
Sbjct: 81 IW 82
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 79 ESLRHLSAKYCPLVPPPRST-------IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK 131
E++ L Y P P R+T + + + + D +++ D L
Sbjct: 97 ENIFILKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXIRVYDSINKKFLL 156
Query: 132 VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172
LSGH W +++ IL SGS D VR+WD C
Sbjct: 157 QLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCC 195
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 104 SPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVR 163
S G + S D+T+ + D CL +LSGH + + R + S S D +R
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCI-SASXDTTIR 335
Query: 164 LWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNN 209
+WD E + + + + ++ L++ A+ + W N+
Sbjct: 336 IWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND 381
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 107 GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS-EILASGSLDHEVRLW 165
G L S D TV++ D + G C V GH T + ++ + + +GS D+ + +W
Sbjct: 173 GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 232
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 107 GRTLASTHGDHTVKI--IDCQTGNCLKVLSGHRRTPWVVRF-HPLRSEILASGSLDHEVR 163
G+ LA+ D T+KI ++ +T + L+GH W V + HP ILAS S D +V
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 164 LW 165
+W
Sbjct: 83 IW 84
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 107 GRTLASTHGDHTVKI--IDCQTGNCLKVLSGHRRTPWVVRF-HPLRSEILASGSLDHEVR 163
G+ LA+ D T+KI ++ +T + L+GH W V + HP ILAS S D +V
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 164 LW 165
+W
Sbjct: 81 IW 82
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 107 GRTLASTHGDHTVKI--IDCQTGNCLKVLSGHRRTPWVVRF-HPLRSEILASGSLDHEVR 163
G+ +A+ D T+KI ++ +T + L+GH W V + HP ILAS S D +V
Sbjct: 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80
Query: 164 LW 165
+W
Sbjct: 81 IW 82
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL 158
++ + +PD R S D + K+ D + G C + +GH + F P A+GS
Sbjct: 199 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSD 257
Query: 159 DHEVRLWDANTSECIGSC---DFYRPIASIAFHAEGELL 194
D RL+D + + + + I S++F G LL
Sbjct: 258 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 296
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL 158
++ + +PD R S D + K+ D + G C + +GH + F P A+GS
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSD 246
Query: 159 DHEVRLWDANTSECIGSC---DFYRPIASIAFHAEGELL 194
D RL+D + + + + I S++F G LL
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWV--VRFHPL 148
V + ++ AFS D R + S D T+K+ + G C + + WV VRF P
Sbjct: 124 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPN 182
Query: 149 RSE-ILASGSLDHEVRLWDANTSEC 172
S I+ S D V++W N + C
Sbjct: 183 SSNPIIVSCGWDKLVKVW--NLANC 205
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 101 AAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH 160
S DG+ S D T+++ D TG + GH + V F +I+ SGS D
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDK 150
Query: 161 EVRLWDANTSECIGSCDF 178
++LW+ +G C +
Sbjct: 151 TIKLWNT-----LGVCKY 163
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL 158
++ + +PD R S D + K+ D + G C + +GH + F P A+GS
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSD 246
Query: 159 DHEVRLWDANTSECIGSC---DFYRPIASIAFHAEGELL 194
D RL+D + + + + I S++F G LL
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL 158
++ + +PD R S D + K+ D + G C + +GH + F P A+GS
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSD 246
Query: 159 DHEVRLWDANTSECIGSC---DFYRPIASIAFHAEGELL 194
D RL+D + + + + I S++F G LL
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Query: 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL 158
++ + +PD R S D + K+ D + G C + +GH + F P A+GS
Sbjct: 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSD 246
Query: 159 DHEVRLWDANTSECIGSC---DFYRPIASIAFHAEGELL 194
D RL+D + + + + I S++F G LL
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 25/140 (17%)
Query: 103 FSPDGRT-LASTHGDHTVKIIDCQTGNCLKVL-----SGHRRTPWVVRFHPLRSEILASG 156
+ PD T L + GD T + D TG + + SGH + + L + + SG
Sbjct: 165 YVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISG 224
Query: 157 SLDHEVRLWDAN-TSECIGSCDFYR-PIASIAFHAEGE------------LLAVASGHKL 202
S D VRLWD TS + + + I S+ F +G+ L + +GH+L
Sbjct: 225 SCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284
Query: 203 YIWPYN---NKEEASSPIIV 219
+ YN ++ + PI+
Sbjct: 285 QV--YNREPDRNDNELPIVT 302
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 27/139 (19%)
Query: 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLR-HLSAKYCPLVPPPRSTIAA 101
+ P++ W+ S+ +D + L+ W S + H +CP V +
Sbjct: 74 WTPEKNWIV-----------SASQDGR--LIVWNALTSQKTHAIKLHCPWV------MEC 114
Query: 102 AFSPDGRTLASTHGDHTVKIIDCQT-----GN--CLKVLSGHRRTPWVVRFHPLRSEILA 154
AF+P+G+++A D I + + GN +VL+GH+ ++ P + L
Sbjct: 115 AFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 155 SGSLDHEVRLWDANTSECI 173
+GS D LWD T + I
Sbjct: 175 TGSGDQTCVLWDVTTGQRI 193
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWV--VRFHPL 148
V + ++ AFS D R + S D T+K+ + G C + + WV VRF P
Sbjct: 101 FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPN 159
Query: 149 RSE-ILASGSLDHEVRLWDANTSEC 172
S I+ S D V++W N + C
Sbjct: 160 SSNPIIVSCGWDKLVKVW--NLANC 182
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 101 AAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH 160
S DG+ S D T+++ D TG + GH + V F +I+ SGS D
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDK 127
Query: 161 EVRLWDANTSECIGSCDF 178
++LW+ +G C +
Sbjct: 128 TIKLWNT-----LGVCKY 140
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 26/138 (18%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH------RRTPWVVRFHPLRSEIL 153
AA FSPDG L +T +++ +C L H TP +HP + I+
Sbjct: 301 AACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIV 360
Query: 154 ASGSLD--------HEVR---LWDANTSECIGSCDFYRP----IASI-AFHAEGELLAVA 197
D +E+R ++D N+ + + C Y P I+S+ F+ G+ LA A
Sbjct: 361 VGRYPDPNFKSCTPYELRTIDVFDGNSGKMM--CQLYDPESSGISSLNEFNPMGDTLASA 418
Query: 198 SGHKLYIWPYNNKEEASS 215
G+ + IW + +EEA +
Sbjct: 419 MGYHILIW--SEQEEART 434
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
F P G L S+ D +KI + G+ + L GHR T + R + S SLD +
Sbjct: 144 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTI 202
Query: 163 RLWDANTSECI 173
RLW+ T I
Sbjct: 203 RLWECGTGTTI 213
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
F P G L S+ D +KI + G+ + L GHR T + R + S SLD +
Sbjct: 147 FFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID-RGRNVLSASLDGTI 205
Query: 163 RLWDANTSECI 173
RLW+ T I
Sbjct: 206 RLWECGTGTTI 216
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 107 GRTLASTHGDHTVKI--IDCQTGNCLKVLSGHRRTPWVVRF-HPLRSEILASGSLDHEVR 163
G+ A+ D T+KI ++ +T + L+GH W V + HP ILAS S D +V
Sbjct: 21 GKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVX 80
Query: 164 LW 165
+W
Sbjct: 81 IW 82
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 71/164 (43%), Gaps = 29/164 (17%)
Query: 76 VEAESLRHLSAKYCPL--VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVL 133
V+ LR + K L +P AA FSPDG L +T +++ +C L
Sbjct: 276 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 335
Query: 134 SGH------RRTPWVVRFHPLRSEILASGSLD--------HEVR---LWDANTSECIGSC 176
H TP +HP + I+ D +E+R ++D N+ + + C
Sbjct: 336 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMM--C 393
Query: 177 DFYRP----IASI-AFHAEGELLAVASGHKLYIWPYNNKEEASS 215
Y P I+S+ F+ G+ LA A G+ + IW ++EEA +
Sbjct: 394 QLYDPESSGISSLNEFNPMGDTLASAMGYHILIW---SQEEART 434
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 133 LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS----ECIGSCDFYRP----IAS 184
L GH++ + + ++P + L S S DH + LWD N + I + + + +
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 185 IAFHAEGELL--AVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240
+A+H E L +VA KL IW N + V + + F+P++ F+L
Sbjct: 241 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE-FIL 297
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 110 LASTHGDHTVKIIDCQTGNCLK---VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166
S D + I D + N K + H + F+P ILA+GS D V LWD
Sbjct: 251 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 310
Query: 167 A-NTSECIGSCDFYR-PIASIAFHAEGELLAVASG--HKLYIW 205
N + S + ++ I + + E + +SG +L++W
Sbjct: 311 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 36.2 bits (82), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 133 LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS----ECIGSCDFYRP----IAS 184
L GH++ + + ++P + L S S DH + LWD N + I + + + +
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 185 IAFHAEGELL--AVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240
+A+H E L +VA KL IW N + V + + F+P++ F+L
Sbjct: 239 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE-FIL 295
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 110 LASTHGDHTVKIIDCQTGNCLK---VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166
S D + I D + N K + H + F+P ILA+GS D V LWD
Sbjct: 249 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 308
Query: 167 A-NTSECIGSCDFYR-PIASIAFHAEGELLAVASG--HKLYIW 205
N + S + ++ I + + E + +SG +L++W
Sbjct: 309 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 11/118 (9%)
Query: 133 LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS----ECIGSCDFYRP----IAS 184
L GH++ + + ++P + L S S DH + LWD N + I + + + +
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 185 IAFHAEGELL--AVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240
+A+H E L +VA KL IW N + V + + F+P++ F+L
Sbjct: 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE-FIL 293
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 110 LASTHGDHTVKIIDCQTGNCLK---VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166
S D + I D + N K + H + F+P ILA+GS D V LWD
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 167 A-NTSECIGSCDFYR-PIASIAFHAEGELLAVASG--HKLYIW 205
N + S + ++ I + + E + +SG +L++W
Sbjct: 307 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 103 FSPD-GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR--TPWVVRFHPLRSEILASGSLD 159
FSPD G + + D + D ++G LK + + + L S+ A+ D
Sbjct: 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD 273
Query: 160 HEVRLWDANTSECI 173
+R+WD TS+C+
Sbjct: 274 ATIRVWDVTTSKCV 287
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 103 FSPD-GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR--TPWVVRFHPLRSEILASGSLD 159
FSPD G + + D + D ++G LK + + + L S+ A+ D
Sbjct: 214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD 273
Query: 160 HEVRLWDANTSECI 173
+R+WD TS+C+
Sbjct: 274 ATIRVWDVTTSKCV 287
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 24/128 (18%)
Query: 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH------RRTPWVVRFHPLRSEIL 153
AA FSPDG L +T +++ +C L H TP +HP + I+
Sbjct: 301 AACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIV 360
Query: 154 ASGSLD--------HEVR---LWDANTSECIGSCDFYRP----IASI-AFHAEGELLAVA 197
D +E+R ++D N+ + + C Y P I+S+ F+ G+ LA A
Sbjct: 361 VGRYPDPNFKSCTPYELRTIDVFDGNSGKMM--CQLYDPESSGISSLNEFNPMGDTLASA 418
Query: 198 SGHKLYIW 205
G+ + IW
Sbjct: 419 MGYHILIW 426
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHPLRSEI-LASGSLD 159
+ P LAS+ D TV+I + C+ VL+GH T W F L SGS D
Sbjct: 161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDD 220
Query: 160 HEVRLW 165
VR+W
Sbjct: 221 STVRVW 226
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 14/129 (10%)
Query: 47 RQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPR--STIAAAFS 104
+ W + S + ++SV DAK +VS+ E + L + K L + T + +
Sbjct: 127 KVWKEGSLVYNLQAHNASVWDAK--VVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHN 184
Query: 105 PDGRTLA--------STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASG 156
R LA S D +K++D TG+ L+ GH + ++ P +I++ G
Sbjct: 185 DVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLP-NGDIVSCG 243
Query: 157 SLDHEVRLW 165
D VR+W
Sbjct: 244 E-DRTVRIW 251
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 105 PDGRTLASTHG-DHTVKIIDCQTGNC-LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
P+ + + +T G D + I D + G + +L H W V FHP E L + S D +
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSL 305
Query: 163 RLWDANT 169
WDA+T
Sbjct: 306 WHWDAST 312
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 110 LASTHGDHTVKIIDCQTGNCLK---VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166
S D + I D ++ N K + H + F+P ILA+GS D V LWD
Sbjct: 243 FGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 302
Query: 167 A-NTSECIGSCDFYR-PIASIAFHAEGELLAVASG--HKLYIWPYNNKEEASSP 216
N + S + ++ I + + E + +SG +L +W + E SP
Sbjct: 303 LRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSP 356
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 15/165 (9%)
Query: 86 AKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145
A+Y P P I A +P L + H K N L GH++ + + +
Sbjct: 130 ARYMPQNP----CIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSW 185
Query: 146 HPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPI--------ASIAFHAEGELL--A 195
+P S L S S DH + LWD + G + I +++H E L +
Sbjct: 186 NPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGS 245
Query: 196 VASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240
VA KL IW + + V + + F+P++ F+L
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSE-FIL 289
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 15/165 (9%)
Query: 86 AKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145
A+Y P P I A +P L + H K N L GH++ + + +
Sbjct: 132 ARYMPQNP----HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSW 187
Query: 146 HPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIAS--------IAFHAEGELL--A 195
+ S L S S DH V LWD N G + I + +A+H E L +
Sbjct: 188 NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGS 247
Query: 196 VASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240
VA KL IW + + +V + + F+P++ F+L
Sbjct: 248 VADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE-FIL 291
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
+ DG S D T+++ D TG + GH+ V ++ ++ SGS D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI 131
Query: 163 RLW 165
++W
Sbjct: 132 KVW 134
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
+ DG S D T+++ D TG + GH+ V ++ ++ SGS D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI 131
Query: 163 RLW 165
++W
Sbjct: 132 KVW 134
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
+ DG S D T+++ D TG + GH+ V ++ ++ SGS D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI 131
Query: 163 RLW 165
++W
Sbjct: 132 KVW 134
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
+ DG S D T+++ D TG + GH+ V ++ ++ SGS D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI 131
Query: 163 RLW 165
++W
Sbjct: 132 KVW 134
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
+ DG S D T+++ D TG + GH+ V ++ ++ SGS D +
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK-KASMIISGSRDKTI 125
Query: 163 RLW 165
++W
Sbjct: 126 KVW 128
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162
+ DG S D T+++ D TG + GH+ V S I+ SGS D +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII-SGSRDKTI 131
Query: 163 RLW 165
++W
Sbjct: 132 KVW 134
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 15/165 (9%)
Query: 86 AKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145
A+Y P P I A +P L + H K N L GH++ + + +
Sbjct: 132 ARYXPQNP----HIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSW 187
Query: 146 HPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIAS--------IAFHAEGELL--A 195
+ S L S S DH V LWD N G + I + +A+H E L +
Sbjct: 188 NSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGS 247
Query: 196 VASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240
VA KL IW + + +V + + F+P++ F+L
Sbjct: 248 VADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE-FIL 291
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 109 TLASTHGDHTVKIIDCQTGNCLK-------VLSGHRRTPWVVRFHPLRSEILASGSLDHE 161
+AS D TV + + G + L GH + +V +HP +L S D+
Sbjct: 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNV 155
Query: 162 VRLWDANTSECI 173
+ +WD T +
Sbjct: 156 ILVWDVGTGAAV 167
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 103 FSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-------GHRRTPWVVRFHPLRSEILAS 155
++PDG AST GD T+ + + G V H + + + + P ++I AS
Sbjct: 198 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKI-AS 256
Query: 156 GSLDHEVRLWDANT 169
S D +++W+ T
Sbjct: 257 ASADKTIKIWNVAT 270
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 133 LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173
L GH + +V +HP +L S D+ + +WD T +
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAV 167
>pdb|3VH0|A Chain A, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|B Chain B, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|C Chain C, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|D Chain D, Crystal Structure Of E. Coli Ynce Complexed With Dna
Length = 353
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 119 VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF 178
V ++D + GN L ++ V F+P R+E + +V + DA + + + + D
Sbjct: 255 VLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT 312
Query: 179 YRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLK 221
S+A A+G+ L V+ K ++EA+ P V++
Sbjct: 313 PTHPNSLALSADGKTLYVSVKQK-----STKQQEATQPDDVIR 350
>pdb|3VGZ|A Chain A, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|B Chain B, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|C Chain C, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|D Chain D, Crystal Structure Of E. Coli Ynce
Length = 353
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 119 VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF 178
V ++D + GN L ++ V F+P R+E + +V + DA + + + + D
Sbjct: 255 VLVVDTRNGNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT 312
Query: 179 YRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLK 221
S+A A+G+ L V+ K ++EA+ P V++
Sbjct: 313 PTHPNSLALSADGKTLYVSVKQK-----STKQQEATQPDDVIR 350
>pdb|2E66|A Chain A, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Ot3,
Mutation D60a
pdb|2E66|B Chain B, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Ot3,
Mutation D60a
pdb|2E66|C Chain C, Crystal Structure Of Cuta1 From Pyrococcus Horikoshii Ot3,
Mutation D60a
Length = 102
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 200 HKLYIWPYNNKEEASSPIIVLKTRRSL------RAVHFHPHAAPFVLTAEVNDLD 248
H+ + W EE +LKTR +L R HP+ P ++ +V+D++
Sbjct: 35 HRAFYWWEGKIEEDKEVGAILKTREALWEELKERIKELHPYDVPAIIRIDVDDVN 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,207,178
Number of Sequences: 62578
Number of extensions: 926611
Number of successful extensions: 2334
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1897
Number of HSP's gapped (non-prelim): 287
length of query: 792
length of database: 14,973,337
effective HSP length: 107
effective length of query: 685
effective length of database: 8,277,491
effective search space: 5670081335
effective search space used: 5670081335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)