Query 036953
Match_columns 792
No_of_seqs 442 out of 3258
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:06:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 5.2E-29 1.1E-33 268.4 19.7 256 21-348 194-458 (459)
2 KOG0271 Notchless-like WD40 re 99.9 5.4E-26 1.2E-30 242.5 21.4 256 22-352 135-441 (480)
3 KOG0271 Notchless-like WD40 re 99.9 2.6E-25 5.6E-30 237.4 21.7 266 40-353 114-400 (480)
4 KOG0286 G-protein beta subunit 99.9 1.3E-23 2.7E-28 218.8 27.6 264 19-348 72-343 (343)
5 KOG0272 U4/U6 small nuclear ri 99.9 6.4E-25 1.4E-29 236.9 17.8 234 92-355 172-423 (459)
6 KOG0315 G-protein beta subunit 99.9 8.2E-24 1.8E-28 216.2 23.7 256 68-353 9-291 (311)
7 KOG0263 Transcription initiati 99.9 1.8E-24 3.8E-29 247.6 18.8 249 40-352 377-651 (707)
8 KOG0284 Polyadenylation factor 99.9 2.3E-23 4.9E-28 224.2 22.5 255 70-355 109-386 (464)
9 KOG0279 G protein beta subunit 99.9 1.4E-22 3E-27 210.1 24.3 200 22-242 36-252 (315)
10 KOG0265 U5 snRNP-specific prot 99.9 2.1E-22 4.6E-27 210.3 23.1 253 39-310 45-324 (338)
11 KOG0266 WD40 repeat-containing 99.9 1E-21 2.2E-26 223.9 30.2 237 72-310 174-438 (456)
12 KOG0268 Sof1-like rRNA process 99.9 1.4E-23 3.1E-28 223.1 12.9 230 89-352 60-304 (433)
13 KOG0263 Transcription initiati 99.9 5.6E-23 1.2E-27 235.4 17.5 185 68-256 462-652 (707)
14 KOG0273 Beta-transducin family 99.9 1.5E-21 3.2E-26 213.2 26.3 247 39-352 233-484 (524)
15 PTZ00421 coronin; Provisional 99.9 8.6E-21 1.9E-25 217.9 29.9 272 22-355 3-295 (493)
16 KOG0318 WD40 repeat stress pro 99.9 1.1E-19 2.3E-24 200.8 37.0 269 39-353 57-353 (603)
17 cd00200 WD40 WD40 domain, foun 99.9 2.9E-20 6.2E-25 186.5 30.1 254 37-310 5-277 (289)
18 KOG0279 G protein beta subunit 99.9 8.5E-21 1.8E-25 196.9 24.3 208 68-310 27-249 (315)
19 KOG0286 G-protein beta subunit 99.9 2.8E-20 6.1E-25 194.0 26.8 249 31-353 45-306 (343)
20 KOG0291 WD40-repeat-containing 99.9 3E-20 6.6E-25 211.4 28.9 211 22-251 285-506 (893)
21 KOG0285 Pleiotropic regulator 99.9 1E-20 2.2E-25 201.0 21.4 248 69-348 163-437 (460)
22 PLN00181 protein SPA1-RELATED; 99.9 2.4E-19 5.3E-24 217.0 35.0 252 40-310 482-779 (793)
23 PTZ00420 coronin; Provisional 99.9 9.7E-20 2.1E-24 211.3 28.7 305 22-388 4-330 (568)
24 KOG0318 WD40 repeat stress pro 99.9 3.7E-19 8E-24 196.5 31.1 304 22-355 79-522 (603)
25 KOG0310 Conserved WD40 repeat- 99.9 7.1E-20 1.5E-24 201.1 24.8 245 23-315 47-300 (487)
26 KOG0645 WD40 repeat protein [G 99.9 3.1E-19 6.8E-24 184.7 27.8 259 33-310 6-297 (312)
27 KOG0284 Polyadenylation factor 99.8 5.8E-21 1.3E-25 205.8 14.5 227 39-285 136-378 (464)
28 KOG0295 WD40 repeat-containing 99.8 1.2E-19 2.6E-24 193.5 22.1 240 22-310 128-392 (406)
29 KOG0282 mRNA splicing factor [ 99.8 7.6E-21 1.7E-25 208.3 12.8 217 90-310 209-448 (503)
30 KOG0291 WD40-repeat-containing 99.8 4.8E-19 1E-23 201.8 27.0 227 70-353 278-511 (893)
31 KOG0266 WD40 repeat-containing 99.8 1.7E-19 3.6E-24 205.8 23.5 212 21-252 178-408 (456)
32 KOG0273 Beta-transducin family 99.8 4.7E-19 1E-23 193.8 24.0 224 21-248 254-518 (524)
33 KOG0645 WD40 repeat protein [G 99.8 8.9E-19 1.9E-23 181.3 23.8 207 90-350 9-225 (312)
34 KOG0305 Anaphase promoting com 99.8 1.2E-18 2.5E-23 196.7 26.3 255 25-355 198-466 (484)
35 KOG0292 Vesicle coat complex C 99.8 3.4E-19 7.3E-24 205.2 21.0 243 40-352 8-282 (1202)
36 KOG0283 WD40 repeat-containing 99.8 3.6E-19 7.8E-24 205.7 20.9 159 91-252 365-531 (712)
37 KOG0276 Vesicle coat complex C 99.8 4.7E-19 1E-23 198.4 21.0 215 19-252 30-256 (794)
38 KOG1446 Histone H3 (Lys4) meth 99.8 6.1E-18 1.3E-22 178.3 28.0 244 40-353 13-265 (311)
39 KOG0292 Vesicle coat complex C 99.8 1.8E-18 3.8E-23 199.3 25.0 224 12-253 16-280 (1202)
40 KOG0315 G-protein beta subunit 99.8 4.1E-18 8.8E-23 174.8 25.0 211 22-251 18-243 (311)
41 KOG0285 Pleiotropic regulator 99.8 4.7E-19 1E-23 188.6 18.3 217 90-310 146-376 (460)
42 KOG0319 WD40-repeat-containing 99.8 5.3E-19 1.1E-23 201.4 19.8 227 67-352 375-621 (775)
43 KOG0313 Microtubule binding pr 99.8 3.4E-18 7.3E-23 183.4 24.7 245 23-310 124-404 (423)
44 cd00200 WD40 WD40 domain, foun 99.8 9.7E-18 2.1E-22 168.2 26.8 217 90-310 4-235 (289)
45 KOG0278 Serine/threonine kinas 99.8 1.3E-19 2.9E-24 185.5 13.2 225 73-356 75-303 (334)
46 KOG0306 WD40-repeat-containing 99.8 3.9E-18 8.5E-23 194.3 24.6 245 77-351 392-665 (888)
47 PTZ00421 coronin; Provisional 99.8 7.2E-18 1.6E-22 193.9 27.3 178 71-250 90-287 (493)
48 KOG0295 WD40 repeat-containing 99.8 6.9E-19 1.5E-23 187.8 17.1 239 71-353 122-367 (406)
49 KOG0265 U5 snRNP-specific prot 99.8 2.3E-18 5E-23 180.3 20.2 206 90-355 42-251 (338)
50 KOG0281 Beta-TrCP (transducin 99.8 1.6E-19 3.4E-24 191.3 11.4 224 63-355 201-433 (499)
51 KOG0319 WD40-repeat-containing 99.8 1.3E-18 2.9E-23 198.1 17.9 179 68-250 423-616 (775)
52 KOG0277 Peroxisomal targeting 99.8 3.7E-18 8E-23 175.5 19.0 175 68-244 72-255 (311)
53 KOG0973 Histone transcription 99.8 3.7E-18 8.1E-23 201.4 21.5 267 40-310 12-341 (942)
54 KOG0303 Actin-binding protein 99.8 5.9E-18 1.3E-22 182.1 16.9 221 18-242 4-234 (472)
55 KOG0282 mRNA splicing factor [ 99.8 7.7E-18 1.7E-22 184.9 17.5 236 70-308 228-488 (503)
56 KOG0643 Translation initiation 99.8 7.7E-17 1.7E-21 166.8 23.6 235 71-310 24-303 (327)
57 KOG0316 Conserved WD40 repeat- 99.8 8E-17 1.7E-21 164.3 23.3 188 40-251 16-211 (307)
58 KOG0293 WD40 repeat-containing 99.8 3.2E-17 6.9E-22 177.2 21.2 275 35-350 218-513 (519)
59 KOG0640 mRNA cleavage stimulat 99.8 4.6E-18 9.9E-23 178.4 14.0 213 89-355 106-340 (430)
60 KOG0639 Transducin-like enhanc 99.8 1.1E-17 2.4E-22 183.8 17.0 208 68-310 476-690 (705)
61 KOG0305 Anaphase promoting com 99.8 3.1E-17 6.8E-22 185.2 21.1 211 21-252 236-460 (484)
62 PLN00181 protein SPA1-RELATED; 99.8 2.5E-16 5.5E-21 190.9 29.4 232 89-352 477-740 (793)
63 KOG0772 Uncharacterized conser 99.8 2.7E-17 5.9E-22 181.4 18.9 239 39-319 165-434 (641)
64 KOG0296 Angio-associated migra 99.8 2.7E-16 5.8E-21 168.3 25.7 159 37-212 60-224 (399)
65 KOG0276 Vesicle coat complex C 99.7 4.6E-17 9.9E-22 182.7 20.5 248 31-352 3-259 (794)
66 KOG0647 mRNA export protein (c 99.7 3.9E-16 8.4E-21 163.9 26.0 269 39-327 25-326 (347)
67 KOG0277 Peroxisomal targeting 99.7 4.5E-17 9.8E-22 167.6 18.4 218 95-368 60-283 (311)
68 KOG0643 Translation initiation 99.7 1.3E-16 2.9E-21 165.1 21.7 207 91-352 6-222 (327)
69 PTZ00420 coronin; Provisional 99.7 3.5E-16 7.5E-21 181.9 27.3 194 38-251 71-291 (568)
70 KOG0283 WD40 repeat-containing 99.7 2.9E-17 6.3E-22 190.0 16.7 214 91-310 262-562 (712)
71 KOG0640 mRNA cleavage stimulat 99.7 5.5E-17 1.2E-21 170.4 16.7 271 40-349 111-425 (430)
72 KOG0275 Conserved WD40 repeat- 99.7 2E-17 4.3E-22 174.1 12.9 182 43-242 215-411 (508)
73 KOG0294 WD40 repeat-containing 99.7 5.9E-16 1.3E-20 163.2 23.3 231 61-352 45-283 (362)
74 KOG0274 Cdc4 and related F-box 99.7 6.4E-16 1.4E-20 178.9 25.9 245 69-355 218-487 (537)
75 KOG1407 WD40 repeat protein [F 99.7 2.7E-16 5.9E-21 162.4 19.4 234 89-352 14-263 (313)
76 KOG0264 Nucleosome remodeling 99.7 1.3E-16 2.9E-21 174.4 16.8 184 62-245 183-395 (422)
77 KOG0316 Conserved WD40 repeat- 99.7 2.2E-16 4.8E-21 161.1 17.0 205 90-355 12-218 (307)
78 KOG0281 Beta-TrCP (transducin 99.7 8.4E-17 1.8E-21 170.8 14.1 229 67-355 245-482 (499)
79 KOG0288 WD40 repeat protein Ti 99.7 1.1E-16 2.4E-21 173.2 13.6 225 71-353 189-420 (459)
80 KOG0313 Microtubule binding pr 99.7 5.1E-16 1.1E-20 166.7 18.4 230 67-353 113-379 (423)
81 KOG0310 Conserved WD40 repeat- 99.7 1E-15 2.2E-20 168.7 20.6 234 29-310 14-254 (487)
82 KOG0264 Nucleosome remodeling 99.7 6.2E-16 1.4E-20 169.2 18.7 223 69-310 137-389 (422)
83 KOG0275 Conserved WD40 repeat- 99.7 5E-16 1.1E-20 163.6 16.6 209 19-245 230-459 (508)
84 KOG0289 mRNA splicing factor [ 99.7 2.8E-15 6.2E-20 163.1 22.9 199 26-243 243-452 (506)
85 KOG0269 WD40 repeat-containing 99.7 6.6E-16 1.4E-20 177.0 18.1 175 67-243 98-283 (839)
86 KOG0288 WD40 repeat protein Ti 99.7 7.2E-16 1.6E-20 167.0 17.1 209 70-310 232-447 (459)
87 KOG0306 WD40-repeat-containing 99.7 1.8E-15 3.8E-20 173.0 20.3 180 69-252 466-663 (888)
88 KOG0308 Conserved WD40 repeat- 99.7 6.5E-16 1.4E-20 174.4 16.6 210 68-310 36-271 (735)
89 KOG0641 WD40 repeat protein [G 99.7 2.3E-14 5E-19 145.5 25.5 236 41-349 89-348 (350)
90 KOG0302 Ribosome Assembly prot 99.7 1.1E-15 2.3E-20 164.2 16.7 186 69-254 165-379 (440)
91 KOG0302 Ribosome Assembly prot 99.7 6E-16 1.3E-20 166.1 14.2 173 71-245 226-430 (440)
92 KOG0289 mRNA splicing factor [ 99.7 5.3E-15 1.2E-19 161.0 21.6 238 69-310 231-492 (506)
93 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 4.7E-14 1E-18 147.1 27.7 166 71-243 3-176 (300)
94 KOG0278 Serine/threonine kinas 99.7 7.1E-16 1.5E-20 158.4 13.4 225 6-251 63-295 (334)
95 KOG1407 WD40 repeat protein [F 99.7 1.9E-14 4E-19 148.9 23.6 262 35-317 14-295 (313)
96 KOG0269 WD40 repeat-containing 99.7 1.5E-15 3.3E-20 174.1 17.1 207 19-243 105-329 (839)
97 KOG2096 WD40 repeat protein [G 99.6 1.6E-14 3.6E-19 152.5 21.9 178 136-316 186-395 (420)
98 KOG0293 WD40 repeat-containing 99.6 1.4E-14 3E-19 157.0 18.9 160 90-253 219-384 (519)
99 KOG0296 Angio-associated migra 99.6 4.1E-14 8.8E-19 151.7 21.6 161 89-253 58-220 (399)
100 KOG4283 Transcription-coupled 99.6 3.5E-14 7.6E-19 148.7 20.6 184 68-252 55-275 (397)
101 KOG0973 Histone transcription 99.6 2.4E-14 5.2E-19 169.6 21.8 189 40-233 68-275 (942)
102 KOG0299 U3 snoRNP-associated p 99.6 4.3E-14 9.2E-19 155.1 21.8 211 93-352 200-412 (479)
103 KOG0267 Microtubule severing p 99.6 9.9E-16 2.1E-20 174.5 9.4 157 91-252 66-225 (825)
104 KOG0772 Uncharacterized conser 99.6 7.9E-15 1.7E-19 162.2 16.1 216 25-243 190-429 (641)
105 KOG0300 WD40 repeat-containing 99.6 1.2E-14 2.6E-19 153.1 16.2 251 71-351 162-477 (481)
106 KOG1332 Vesicle coat complex C 99.6 2.5E-14 5.4E-19 146.9 18.1 219 68-312 22-274 (299)
107 KOG0268 Sof1-like rRNA process 99.6 6.6E-15 1.4E-19 157.5 13.8 225 71-353 81-348 (433)
108 KOG1036 Mitotic spindle checkp 99.6 3.9E-13 8.4E-18 141.9 26.5 248 41-310 13-290 (323)
109 KOG0639 Transducin-like enhanc 99.6 1.5E-14 3.3E-19 159.4 16.3 219 56-310 416-649 (705)
110 KOG0641 WD40 repeat protein [G 99.6 4.6E-13 9.9E-18 136.1 24.4 234 40-310 31-289 (350)
111 KOG0267 Microtubule severing p 99.6 2.5E-15 5.5E-20 171.3 8.9 170 70-243 83-258 (825)
112 KOG0274 Cdc4 and related F-box 99.6 6.7E-14 1.5E-18 162.2 20.7 174 68-252 260-440 (537)
113 KOG0646 WD40 repeat protein [G 99.6 5.6E-14 1.2E-18 154.4 17.6 232 77-352 59-309 (476)
114 KOG0301 Phospholipase A2-activ 99.6 9.1E-14 2E-18 158.3 18.6 200 68-310 70-275 (745)
115 KOG4283 Transcription-coupled 99.5 1.3E-13 2.7E-18 144.7 17.1 221 92-355 40-281 (397)
116 KOG4328 WD40 protein [Function 99.5 1.6E-13 3.6E-18 150.4 18.2 207 32-253 177-399 (498)
117 KOG0321 WD40 repeat-containing 99.5 3.1E-13 6.7E-18 152.8 20.0 260 67-353 62-394 (720)
118 KOG0308 Conserved WD40 repeat- 99.5 1.3E-13 2.9E-18 156.0 17.0 176 68-247 84-279 (735)
119 KOG0299 U3 snoRNP-associated p 99.5 6.4E-13 1.4E-17 146.0 21.5 201 40-243 201-445 (479)
120 KOG0646 WD40 repeat protein [G 99.5 4.4E-13 9.6E-18 147.4 20.2 215 21-251 58-305 (476)
121 KOG1446 Histone H3 (Lys4) meth 99.5 6.6E-12 1.4E-16 133.1 27.7 201 77-310 78-291 (311)
122 KOG1332 Vesicle coat complex C 99.5 3.2E-13 7E-18 138.8 17.2 218 19-250 28-283 (299)
123 KOG0300 WD40 repeat-containing 99.5 4.1E-13 9E-18 141.7 18.4 165 69-235 284-456 (481)
124 KOG0270 WD40 repeat-containing 99.5 4.9E-13 1.1E-17 146.4 19.2 173 69-243 192-393 (463)
125 TIGR03866 PQQ_ABC_repeats PQQ- 99.5 1.9E-11 4.1E-16 127.5 29.8 162 76-243 92-268 (300)
126 KOG2445 Nuclear pore complex c 99.5 2.5E-12 5.4E-17 135.8 22.5 231 69-310 25-304 (361)
127 KOG2106 Uncharacterized conser 99.5 6.8E-12 1.5E-16 139.0 26.6 236 22-310 220-507 (626)
128 KOG0294 WD40 repeat-containing 99.5 1.9E-12 4.2E-17 137.0 20.8 146 91-243 39-188 (362)
129 KOG0647 mRNA export protein (c 99.5 4.8E-12 1E-16 133.4 23.1 248 24-295 50-322 (347)
130 KOG1273 WD40 repeat protein [G 99.5 4E-13 8.7E-18 142.0 14.4 151 98-252 26-225 (405)
131 KOG1274 WD40 repeat protein [G 99.5 9.7E-13 2.1E-17 153.8 18.9 190 58-249 55-258 (933)
132 KOG2096 WD40 repeat protein [G 99.5 6.6E-13 1.4E-17 140.5 15.4 173 67-243 197-393 (420)
133 KOG0307 Vesicle coat complex C 99.5 1.7E-13 3.7E-18 163.2 12.1 198 42-253 65-284 (1049)
134 KOG0301 Phospholipase A2-activ 99.5 6.9E-13 1.5E-17 151.2 16.2 168 69-249 112-284 (745)
135 KOG1274 WD40 repeat protein [G 99.5 3.7E-12 8E-17 149.0 21.4 213 92-310 10-248 (933)
136 KOG0303 Actin-binding protein 99.4 2.7E-12 5.9E-17 138.9 17.2 178 68-248 93-289 (472)
137 KOG1273 WD40 repeat protein [G 99.4 8.2E-12 1.8E-16 132.2 20.3 182 44-243 26-269 (405)
138 KOG1538 Uncharacterized conser 99.4 2.3E-12 5.1E-17 145.7 17.2 245 43-310 14-279 (1081)
139 KOG1539 WD repeat protein [Gen 99.4 2.5E-11 5.3E-16 141.0 25.3 288 22-352 180-608 (910)
140 KOG1539 WD repeat protein [Gen 99.4 4.6E-12 1E-16 146.8 19.4 222 68-293 411-654 (910)
141 KOG0290 Conserved WD40 repeat- 99.4 2.3E-12 4.9E-17 135.2 14.6 199 42-244 97-308 (364)
142 KOG1034 Transcriptional repres 99.4 3.3E-12 7.1E-17 135.8 15.5 182 69-251 105-381 (385)
143 KOG4378 Nuclear protein COP1 [ 99.4 3.2E-11 7E-16 133.4 23.5 181 70-254 92-286 (673)
144 KOG1007 WD repeat protein TSSC 99.4 7.1E-12 1.5E-16 131.5 17.3 193 43-243 125-350 (370)
145 KOG2055 WD40 repeat protein [G 99.4 4.7E-11 1E-15 131.5 24.2 214 71-310 272-498 (514)
146 KOG1009 Chromatin assembly com 99.4 8.8E-12 1.9E-16 135.5 18.4 172 71-243 28-250 (434)
147 KOG1445 Tumor-specific antigen 99.4 5.3E-12 1.2E-16 142.3 15.9 166 76-244 600-785 (1012)
148 KOG1408 WD40 repeat protein [F 99.4 2.3E-11 5.1E-16 138.7 20.5 242 69-310 392-699 (1080)
149 KOG4378 Nuclear protein COP1 [ 99.4 1.7E-11 3.8E-16 135.5 18.7 197 21-235 98-305 (673)
150 KOG1063 RNA polymerase II elon 99.4 5.7E-11 1.2E-15 135.8 22.6 255 71-352 281-650 (764)
151 KOG4328 WD40 protein [Function 99.4 8.8E-12 1.9E-16 137.0 15.4 205 92-349 183-398 (498)
152 KOG1036 Mitotic spindle checkp 99.4 5.4E-11 1.2E-15 125.9 20.6 150 94-252 12-167 (323)
153 KOG1034 Transcriptional repres 99.4 2.9E-11 6.4E-16 128.7 18.2 140 70-211 66-214 (385)
154 KOG2048 WD40 repeat protein [G 99.3 1.5E-10 3.2E-15 132.3 24.6 177 71-250 39-230 (691)
155 KOG0270 WD40 repeat-containing 99.3 2.8E-11 6E-16 132.8 17.6 179 66-245 253-440 (463)
156 KOG1007 WD repeat protein TSSC 99.3 4.2E-11 9.2E-16 125.7 17.1 147 93-243 121-278 (370)
157 KOG1009 Chromatin assembly com 99.3 1.4E-11 3E-16 134.0 13.3 147 95-245 13-187 (434)
158 KOG2106 Uncharacterized conser 99.3 4.8E-10 1E-14 124.7 25.4 153 92-250 365-518 (626)
159 KOG0290 Conserved WD40 repeat- 99.3 7.8E-11 1.7E-15 123.9 17.7 234 2-244 100-356 (364)
160 KOG0321 WD40 repeat-containing 99.3 1.2E-10 2.6E-15 132.2 19.5 175 67-243 110-337 (720)
161 KOG1523 Actin-related protein 99.3 4.4E-11 9.5E-16 127.1 14.7 203 95-310 10-222 (361)
162 KOG0307 Vesicle coat complex C 99.3 1.1E-11 2.3E-16 148.1 10.8 237 43-310 8-270 (1049)
163 KOG1310 WD40 repeat protein [G 99.3 3.7E-11 8E-16 134.2 14.2 219 89-310 44-289 (758)
164 PRK01742 tolB translocation pr 99.3 2.8E-10 6.1E-15 129.1 21.7 156 79-243 184-352 (429)
165 KOG1063 RNA polymerase II elon 99.3 4.1E-11 8.8E-16 137.0 14.2 188 36-235 520-735 (764)
166 KOG1445 Tumor-specific antigen 99.3 3.5E-11 7.5E-16 135.8 13.4 174 69-243 640-833 (1012)
167 PRK05137 tolB translocation pr 99.3 1.6E-09 3.4E-14 123.1 27.2 157 80-242 183-352 (435)
168 KOG2055 WD40 repeat protein [G 99.3 8E-11 1.7E-15 129.7 15.8 211 19-247 275-506 (514)
169 KOG2048 WD40 repeat protein [G 99.3 8.2E-10 1.8E-14 126.3 24.4 190 95-310 25-220 (691)
170 KOG2919 Guanine nucleotide-bin 99.3 1.7E-10 3.6E-15 122.8 17.2 217 6-243 112-359 (406)
171 KOG1188 WD40 repeat protein [G 99.2 2.3E-10 5E-15 122.5 17.3 164 71-235 42-223 (376)
172 KOG1524 WD40 repeat-containing 99.2 1.3E-10 2.7E-15 129.8 15.5 172 39-243 102-276 (737)
173 PRK01742 tolB translocation pr 99.2 5.9E-10 1.3E-14 126.5 21.6 182 40-243 202-391 (429)
174 KOG1408 WD40 repeat protein [F 99.2 1.4E-10 3E-15 132.6 15.3 209 24-250 481-710 (1080)
175 KOG0649 WD40 repeat protein [G 99.2 1.2E-09 2.5E-14 112.9 20.6 147 96-251 115-272 (325)
176 PF08662 eIF2A: Eukaryotic tra 99.2 1E-09 2.2E-14 112.1 20.1 159 43-210 7-181 (194)
177 KOG0642 Cell-cycle nuclear pro 99.2 1.5E-10 3.3E-15 130.2 14.3 203 46-252 281-560 (577)
178 PRK11028 6-phosphogluconolacto 99.2 1.4E-08 3E-13 110.5 29.3 211 22-243 10-247 (330)
179 KOG0644 Uncharacterized conser 99.2 8.6E-11 1.9E-15 136.2 12.4 207 68-310 201-454 (1113)
180 KOG0771 Prolactin regulatory e 99.2 1E-10 2.2E-15 128.0 12.2 146 99-248 148-349 (398)
181 KOG0650 WD40 repeat nucleolar 99.2 4.9E-10 1.1E-14 126.6 17.7 149 91-243 396-586 (733)
182 COG2319 FOG: WD40 repeat [Gene 99.2 2.2E-09 4.8E-14 112.0 21.5 162 77-242 132-303 (466)
183 PRK03629 tolB translocation pr 99.2 7.7E-09 1.7E-13 117.6 27.5 200 80-313 180-392 (429)
184 PRK04922 tolB translocation pr 99.2 2.7E-09 5.9E-14 121.2 23.8 200 80-313 185-397 (433)
185 PRK11028 6-phosphogluconolacto 99.2 1.5E-08 3.2E-13 110.3 28.6 166 76-243 9-194 (330)
186 KOG4227 WD40 repeat protein [G 99.2 7.5E-10 1.6E-14 119.8 17.5 161 90-251 51-228 (609)
187 PRK03629 tolB translocation pr 99.2 5.9E-09 1.3E-13 118.5 25.9 188 37-244 194-394 (429)
188 KOG2445 Nuclear pore complex c 99.2 2.1E-09 4.5E-14 114.0 20.2 221 19-253 30-318 (361)
189 KOG1524 WD40 repeat-containing 99.2 4.2E-10 9.1E-15 125.7 15.7 160 70-236 76-240 (737)
190 PF08662 eIF2A: Eukaryotic tra 99.1 2.8E-09 6.1E-14 108.8 19.6 142 99-248 9-168 (194)
191 KOG2139 WD40 repeat protein [G 99.1 2.6E-09 5.7E-14 115.2 19.8 167 71-243 112-300 (445)
192 KOG1310 WD40 repeat protein [G 99.1 3.3E-10 7.1E-15 126.8 13.2 164 30-209 39-232 (758)
193 COG2319 FOG: WD40 repeat [Gene 99.1 5.7E-08 1.2E-12 101.4 29.2 202 76-310 84-300 (466)
194 KOG2919 Guanine nucleotide-bin 99.1 1.3E-09 2.7E-14 116.2 16.5 178 71-251 125-325 (406)
195 KOG0644 Uncharacterized conser 99.1 9E-11 1.9E-15 136.0 7.0 152 90-245 185-338 (1113)
196 KOG0642 Cell-cycle nuclear pro 99.1 7.9E-10 1.7E-14 124.4 14.2 130 81-212 281-430 (577)
197 KOG2394 WD40 protein DMR-N9 [G 99.1 8.7E-10 1.9E-14 123.4 14.4 162 68-233 184-384 (636)
198 KOG0650 WD40 repeat nucleolar 99.1 1E-08 2.2E-13 116.2 22.8 251 39-310 398-721 (733)
199 KOG1188 WD40 repeat protein [G 99.1 6.2E-10 1.4E-14 119.2 12.6 137 108-245 41-187 (376)
200 PRK05137 tolB translocation pr 99.1 9.5E-09 2.1E-13 116.7 23.2 187 37-243 197-396 (435)
201 KOG4227 WD40 repeat protein [G 99.1 1.5E-08 3.2E-13 110.0 22.6 257 37-310 52-373 (609)
202 KOG2110 Uncharacterized conser 99.1 4.5E-09 9.8E-14 113.7 18.3 148 62-211 90-251 (391)
203 KOG1538 Uncharacterized conser 99.1 1.7E-09 3.6E-14 123.1 15.4 144 97-248 14-157 (1081)
204 PRK04922 tolB translocation pr 99.1 1.9E-08 4.1E-13 114.4 24.2 183 41-243 203-398 (433)
205 TIGR02800 propeller_TolB tol-p 99.1 4.6E-08 9.9E-13 109.4 26.3 158 80-243 171-341 (417)
206 PRK02889 tolB translocation pr 99.0 3.9E-08 8.4E-13 111.7 25.4 201 80-314 177-390 (427)
207 KOG2110 Uncharacterized conser 99.0 8.4E-09 1.8E-13 111.7 18.2 165 77-248 66-243 (391)
208 KOG1523 Actin-related protein 99.0 8.1E-09 1.8E-13 110.1 16.1 190 42-248 11-231 (361)
209 PRK00178 tolB translocation pr 99.0 8.8E-08 1.9E-12 108.3 25.5 157 81-243 181-350 (430)
210 PRK02889 tolB translocation pr 99.0 3.1E-08 6.8E-13 112.5 21.4 185 40-244 194-391 (427)
211 KOG2139 WD40 repeat protein [G 99.0 3.8E-08 8.3E-13 106.4 19.9 216 22-245 118-367 (445)
212 KOG1517 Guanine nucleotide bin 99.0 2E-08 4.2E-13 119.5 19.2 224 20-247 1129-1375(1387)
213 PRK04792 tolB translocation pr 98.9 2.1E-07 4.6E-12 106.6 26.1 158 80-243 199-369 (448)
214 KOG1587 Cytoplasmic dynein int 98.9 1.2E-07 2.5E-12 110.6 23.8 267 41-310 180-502 (555)
215 KOG2394 WD40 protein DMR-N9 [G 98.9 5.2E-09 1.1E-13 117.3 12.1 94 95-189 290-384 (636)
216 TIGR02800 propeller_TolB tol-p 98.9 1.4E-07 3.1E-12 105.4 23.3 181 43-243 191-384 (417)
217 PRK00178 tolB translocation pr 98.9 4.3E-07 9.3E-12 102.8 25.7 187 37-243 194-393 (430)
218 KOG0322 G-protein beta subunit 98.9 3.9E-08 8.4E-13 102.8 14.8 152 95-250 150-320 (323)
219 PRK01029 tolB translocation pr 98.9 5.6E-07 1.2E-11 102.6 25.5 145 94-243 229-390 (428)
220 KOG1272 WD40-repeat-containing 98.8 1E-08 2.2E-13 113.5 10.0 199 22-238 189-394 (545)
221 KOG2111 Uncharacterized conser 98.8 5.2E-07 1.1E-11 96.5 22.4 116 95-211 136-259 (346)
222 KOG1963 WD40 repeat protein [G 98.8 3.3E-07 7.1E-12 108.1 21.8 180 43-240 207-415 (792)
223 KOG0771 Prolactin regulatory e 98.8 5.4E-08 1.2E-12 106.9 14.1 139 68-208 155-354 (398)
224 KOG1517 Guanine nucleotide bin 98.8 5E-07 1.1E-11 107.9 22.8 211 22-248 1084-1328(1387)
225 KOG0322 G-protein beta subunit 98.8 2.9E-08 6.4E-13 103.7 10.0 137 70-207 166-322 (323)
226 PRK01029 tolB translocation pr 98.7 1.6E-06 3.6E-11 98.8 24.4 192 91-313 180-389 (428)
227 KOG4497 Uncharacterized conser 98.7 1.3E-07 2.9E-12 101.2 14.2 138 100-243 13-153 (447)
228 KOG0649 WD40 repeat protein [G 98.7 4.6E-07 1E-11 94.0 17.7 136 68-209 125-275 (325)
229 KOG3881 Uncharacterized conser 98.7 3.8E-07 8.3E-12 99.6 17.6 185 67-254 113-321 (412)
230 COG2706 3-carboxymuconate cycl 98.7 6.4E-06 1.4E-10 89.7 25.9 167 78-245 15-212 (346)
231 PRK04792 tolB translocation pr 98.7 1.7E-06 3.7E-11 99.2 22.5 181 43-243 219-412 (448)
232 KOG1587 Cytoplasmic dynein int 98.7 5.2E-07 1.1E-11 105.3 17.0 211 22-248 263-511 (555)
233 KOG1240 Protein kinase contain 98.6 1.9E-06 4.2E-11 104.4 21.5 187 48-236 1033-1251(1431)
234 PF02239 Cytochrom_D1: Cytochr 98.6 3.1E-06 6.7E-11 94.9 22.0 135 108-243 6-147 (369)
235 KOG0280 Uncharacterized conser 98.6 3.2E-07 6.9E-12 97.3 12.7 155 90-245 160-322 (339)
236 KOG4547 WD40 repeat-containing 98.6 1.7E-06 3.7E-11 98.6 19.3 168 71-243 7-209 (541)
237 KOG0974 WD-repeat protein WDR6 98.6 2.3E-07 5E-12 110.9 12.6 139 69-211 145-291 (967)
238 COG2706 3-carboxymuconate cycl 98.6 8.1E-05 1.8E-09 81.3 30.4 216 21-243 13-263 (346)
239 KOG2321 WD40 repeat protein [G 98.6 8.5E-07 1.8E-11 100.6 15.7 178 61-243 137-333 (703)
240 PF10282 Lactonase: Lactonase, 98.6 9.6E-05 2.1E-09 81.8 31.6 149 95-244 86-265 (345)
241 KOG0280 Uncharacterized conser 98.6 3.3E-06 7.1E-11 89.8 18.3 136 98-236 124-266 (339)
242 KOG1272 WD40-repeat-containing 98.6 1.5E-07 3.2E-12 104.5 8.3 160 72-236 184-347 (545)
243 PF02239 Cytochrom_D1: Cytochr 98.5 7.8E-06 1.7E-10 91.7 22.1 167 73-243 10-191 (369)
244 PF10282 Lactonase: Lactonase, 98.5 5E-05 1.1E-09 84.1 27.8 147 96-243 37-211 (345)
245 PRK04043 tolB translocation pr 98.5 2.8E-05 6.1E-10 88.6 24.8 187 97-313 189-386 (419)
246 KOG0974 WD-repeat protein WDR6 98.5 3.9E-06 8.4E-11 100.7 17.6 177 69-252 99-287 (967)
247 KOG4497 Uncharacterized conser 98.4 2.5E-06 5.5E-11 91.6 14.0 143 96-243 211-422 (447)
248 KOG1354 Serine/threonine prote 98.4 1.3E-06 2.9E-11 94.3 11.6 202 95-310 25-288 (433)
249 KOG2321 WD40 repeat protein [G 98.4 9.4E-06 2E-10 92.4 16.8 175 99-278 137-335 (703)
250 KOG1963 WD40 repeat protein [G 98.3 1.4E-05 3.1E-10 94.6 17.8 132 78-210 180-324 (792)
251 PRK04043 tolB translocation pr 98.3 0.00013 2.8E-09 83.3 24.9 155 80-243 214-387 (419)
252 KOG2111 Uncharacterized conser 98.3 4.3E-05 9.4E-10 82.2 19.4 148 94-245 93-248 (346)
253 KOG1334 WD40 repeat protein [G 98.3 4.2E-06 9.2E-11 93.7 11.6 164 90-253 137-312 (559)
254 KOG1240 Protein kinase contain 98.3 3.3E-05 7.2E-10 94.1 19.4 158 90-249 1043-1226(1431)
255 KOG3881 Uncharacterized conser 98.3 9.9E-06 2.1E-10 88.8 13.5 121 69-190 216-342 (412)
256 KOG1334 WD40 repeat protein [G 98.2 1.8E-05 3.8E-10 88.8 14.8 196 36-247 137-360 (559)
257 KOG4547 WD40 repeat-containing 98.2 4.2E-05 9.1E-10 87.5 18.1 189 19-210 10-222 (541)
258 KOG3914 WD repeat protein WDR4 98.1 7.7E-06 1.7E-10 89.9 9.5 151 78-233 131-299 (390)
259 COG4946 Uncharacterized protei 98.1 0.00087 1.9E-08 75.4 25.1 175 103-310 327-504 (668)
260 KOG1354 Serine/threonine prote 98.1 2.8E-05 6E-10 84.3 12.8 202 41-251 25-304 (433)
261 KOG2041 WD40 repeat protein [G 98.1 6.8E-05 1.5E-09 87.1 16.6 251 39-315 12-279 (1189)
262 KOG2315 Predicted translation 98.1 0.00035 7.6E-09 79.9 21.9 76 161-242 252-330 (566)
263 KOG0309 Conserved WD40 repeat- 98.1 1.8E-05 3.9E-10 92.1 11.6 135 97-234 69-212 (1081)
264 COG4946 Uncharacterized protei 98.1 0.00022 4.8E-09 80.0 19.5 145 92-242 356-507 (668)
265 PF00400 WD40: WD domain, G-be 98.1 9.2E-06 2E-10 60.6 6.1 39 127-166 1-39 (39)
266 KOG2315 Predicted translation 98.0 9.3E-05 2E-09 84.4 15.4 131 95-235 270-412 (566)
267 TIGR02658 TTQ_MADH_Hv methylam 98.0 0.0034 7.4E-08 70.2 27.4 73 103-176 53-144 (352)
268 KOG3914 WD repeat protein WDR4 98.0 6.1E-05 1.3E-09 83.0 12.8 113 98-213 110-228 (390)
269 KOG4532 WD40-like repeat conta 98.0 0.00038 8.2E-09 73.7 17.2 174 69-243 128-322 (344)
270 KOG4190 Uncharacterized conser 98.0 8.8E-06 1.9E-10 91.8 5.5 152 89-243 729-896 (1034)
271 KOG2695 WD40 repeat protein [G 97.9 3.6E-05 7.9E-10 83.5 9.0 139 74-213 229-381 (425)
272 PF04762 IKI3: IKI3 family; I 97.9 0.0023 4.9E-08 79.9 25.9 211 94-310 208-442 (928)
273 PF08450 SGL: SMP-30/Gluconola 97.8 0.02 4.3E-07 59.9 27.8 161 76-239 19-199 (246)
274 KOG1409 Uncharacterized conser 97.8 0.00051 1.1E-08 74.8 14.7 185 67-254 34-271 (404)
275 KOG2314 Translation initiation 97.7 0.0037 8.1E-08 71.7 21.7 282 19-310 226-553 (698)
276 KOG4190 Uncharacterized conser 97.7 8E-05 1.7E-09 84.3 8.4 145 67-213 745-911 (1034)
277 COG5170 CDC55 Serine/threonine 97.7 0.00041 8.9E-09 74.6 12.3 205 39-253 24-314 (460)
278 KOG4714 Nucleoporin [Nuclear s 97.7 0.00014 3.1E-09 76.6 8.6 74 96-169 180-255 (319)
279 PF00400 WD40: WD domain, G-be 97.7 7.4E-05 1.6E-09 55.6 4.8 34 90-123 6-39 (39)
280 PLN02919 haloacid dehalogenase 97.7 0.0019 4.2E-08 81.6 20.2 115 97-212 741-892 (1057)
281 COG5170 CDC55 Serine/threonine 97.6 0.00025 5.4E-09 76.2 10.1 203 95-310 26-296 (460)
282 KOG1832 HIV-1 Vpr-binding prot 97.6 6E-05 1.3E-09 89.2 5.7 159 90-252 1096-1259(1516)
283 PLN02919 haloacid dehalogenase 97.6 0.0039 8.5E-08 78.9 21.6 141 98-240 685-875 (1057)
284 KOG4532 WD40-like repeat conta 97.6 0.0028 6E-08 67.4 16.6 166 70-236 85-263 (344)
285 COG5354 Uncharacterized protei 97.5 0.011 2.5E-07 67.3 22.0 218 20-244 49-295 (561)
286 KOG1064 RAVE (regulator of V-A 97.5 0.00026 5.7E-09 89.2 9.2 137 71-213 2222-2371(2439)
287 KOG2314 Translation initiation 97.5 0.00068 1.5E-08 77.5 11.6 136 97-239 212-362 (698)
288 PF08450 SGL: SMP-30/Gluconola 97.5 0.035 7.5E-07 58.1 23.7 141 95-242 85-244 (246)
289 KOG1275 PAB-dependent poly(A) 97.4 0.0015 3.3E-08 78.2 14.0 173 74-251 152-340 (1118)
290 KOG0309 Conserved WD40 repeat- 97.4 0.00046 1E-08 80.8 9.4 180 43-239 69-261 (1081)
291 KOG1645 RING-finger-containing 97.4 0.0013 2.8E-08 72.9 11.9 151 91-243 189-350 (463)
292 PF11768 DUF3312: Protein of u 97.4 0.0025 5.5E-08 73.7 14.6 113 96-211 206-332 (545)
293 KOG1832 HIV-1 Vpr-binding prot 97.4 0.00016 3.5E-09 85.7 4.6 173 67-252 1111-1295(1516)
294 KOG2066 Vacuolar assembly/sort 97.4 0.0025 5.3E-08 75.8 14.2 158 69-236 49-218 (846)
295 KOG1409 Uncharacterized conser 97.3 0.0027 5.9E-08 69.3 13.4 183 20-212 42-274 (404)
296 PF07433 DUF1513: Protein of u 97.3 0.049 1.1E-06 59.7 22.9 194 97-310 6-232 (305)
297 KOG1645 RING-finger-containing 97.3 0.003 6.4E-08 70.2 13.5 94 119-212 175-270 (463)
298 PF04762 IKI3: IKI3 family; I 97.3 0.02 4.4E-07 71.6 22.3 172 70-243 88-324 (928)
299 KOG2066 Vacuolar assembly/sort 97.3 0.002 4.3E-08 76.5 12.4 142 95-251 39-185 (846)
300 KOG2695 WD40 repeat protein [G 97.3 0.0007 1.5E-08 73.8 8.0 110 69-179 264-387 (425)
301 KOG2041 WD40 repeat protein [G 97.2 0.017 3.7E-07 68.0 19.0 189 37-248 67-283 (1189)
302 TIGR02658 TTQ_MADH_Hv methylam 97.2 0.048 1.1E-06 61.1 21.8 111 102-214 200-336 (352)
303 COG0823 TolB Periplasmic compo 97.2 0.0094 2E-07 68.4 16.6 190 34-243 185-389 (425)
304 COG5354 Uncharacterized protei 97.1 0.0076 1.7E-07 68.7 14.6 137 93-245 272-421 (561)
305 KOG4714 Nucleoporin [Nuclear s 97.1 0.001 2.2E-08 70.3 7.3 141 69-209 101-255 (319)
306 PF11768 DUF3312: Protein of u 97.1 0.0017 3.6E-08 75.2 9.6 75 93-170 257-331 (545)
307 PF15492 Nbas_N: Neuroblastoma 97.1 0.092 2E-06 56.5 21.8 140 101-243 3-167 (282)
308 KOG1920 IkappaB kinase complex 97.1 0.024 5.2E-07 70.3 19.4 171 68-240 79-306 (1265)
309 KOG1912 WD40 repeat protein [G 97.1 0.051 1.1E-06 64.8 20.7 131 78-208 34-186 (1062)
310 PF07433 DUF1513: Protein of u 97.0 0.2 4.3E-06 55.1 24.0 158 78-245 76-277 (305)
311 PF15492 Nbas_N: Neuroblastoma 97.0 0.18 3.9E-06 54.4 22.2 145 98-243 46-249 (282)
312 TIGR03300 assembly_YfgL outer 96.9 0.017 3.6E-07 64.4 14.4 131 69-205 241-376 (377)
313 COG0823 TolB Periplasmic compo 96.8 0.013 2.9E-07 67.1 12.8 143 94-242 191-344 (425)
314 smart00320 WD40 WD40 repeats. 96.7 0.0044 9.6E-08 42.5 5.4 39 127-166 2-40 (40)
315 KOG1064 RAVE (regulator of V-A 96.7 0.0068 1.5E-07 77.2 10.3 154 93-252 2206-2365(2439)
316 TIGR03300 assembly_YfgL outer 96.6 0.046 9.9E-07 60.9 15.2 137 69-213 65-213 (377)
317 KOG1008 Uncharacterized conser 96.6 0.00052 1.1E-08 79.6 -0.3 149 91-243 98-263 (783)
318 PF13360 PQQ_2: PQQ-like domai 96.6 0.11 2.3E-06 53.3 16.8 139 68-212 75-234 (238)
319 PF00930 DPPIV_N: Dipeptidyl p 96.5 0.62 1.3E-05 51.9 23.7 144 137-310 183-343 (353)
320 KOG1275 PAB-dependent poly(A) 96.5 0.014 3E-07 70.4 10.9 142 62-206 180-340 (1118)
321 KOG2114 Vacuolar assembly/sort 96.5 0.31 6.8E-06 59.0 21.7 140 102-243 30-193 (933)
322 KOG4640 Anaphase-promoting com 96.5 0.013 2.8E-07 68.4 10.1 93 95-189 20-115 (665)
323 PF08553 VID27: VID27 cytoplas 96.4 0.098 2.1E-06 64.1 17.8 136 106-245 492-640 (794)
324 PF13360 PQQ_2: PQQ-like domai 96.4 0.029 6.3E-07 57.5 11.7 105 106-213 35-145 (238)
325 KOG0882 Cyclophilin-related pe 96.4 0.013 2.8E-07 66.0 9.0 145 94-242 8-163 (558)
326 KOG1912 WD40 repeat protein [G 96.4 0.11 2.4E-06 62.1 16.7 191 39-236 53-285 (1062)
327 PF00930 DPPIV_N: Dipeptidyl p 96.0 0.44 9.6E-06 53.0 19.0 92 104-198 1-119 (353)
328 COG3391 Uncharacterized conser 95.8 1.5 3.3E-05 49.6 22.2 144 98-243 76-226 (381)
329 KOG3621 WD40 repeat-containing 95.8 0.068 1.5E-06 63.3 11.5 137 94-232 32-179 (726)
330 PRK02888 nitrous-oxide reducta 95.7 0.26 5.6E-06 58.8 16.2 108 103-212 200-355 (635)
331 PF04053 Coatomer_WDAD: Coatom 95.7 0.19 4.1E-06 58.2 14.8 135 98-242 71-213 (443)
332 PF06977 SdiA-regulated: SdiA- 95.7 3 6.5E-05 44.7 22.7 149 91-242 17-189 (248)
333 PF14783 BBS2_Mid: Ciliary BBS 95.6 0.57 1.2E-05 44.2 15.0 98 98-202 2-108 (111)
334 smart00320 WD40 WD40 repeats. 95.6 0.02 4.3E-07 39.1 4.0 31 93-123 10-40 (40)
335 PRK13616 lipoprotein LpqB; Pro 95.5 0.27 5.8E-06 59.0 15.6 139 96-241 350-513 (591)
336 KOG2114 Vacuolar assembly/sort 95.5 0.83 1.8E-05 55.6 19.1 173 67-242 33-233 (933)
337 KOG1920 IkappaB kinase complex 95.3 0.57 1.2E-05 58.7 17.4 166 71-243 45-261 (1265)
338 KOG4649 PQQ (pyrrolo-quinoline 95.1 0.56 1.2E-05 50.3 14.5 130 69-201 23-158 (354)
339 PRK02888 nitrous-oxide reducta 95.1 0.43 9.4E-06 56.9 15.2 92 116-209 295-405 (635)
340 PF08553 VID27: VID27 cytoplas 95.0 1.4 2.9E-05 54.4 19.7 95 70-167 543-646 (794)
341 KOG4640 Anaphase-promoting com 95.0 0.085 1.8E-06 61.9 9.1 92 138-233 21-115 (665)
342 COG3391 Uncharacterized conser 95.0 1.9 4.1E-05 48.8 19.8 170 69-242 85-271 (381)
343 PRK11138 outer membrane biogen 95.0 0.52 1.1E-05 53.1 15.1 132 70-207 257-393 (394)
344 PF14583 Pectate_lyase22: Olig 95.0 4.8 0.0001 45.8 22.3 174 67-240 46-254 (386)
345 COG3204 Uncharacterized protei 94.9 3 6.5E-05 45.7 19.5 151 91-242 81-251 (316)
346 PF00780 CNH: CNH domain; Int 94.8 0.89 1.9E-05 48.1 15.7 131 106-243 6-156 (275)
347 PF02897 Peptidase_S9_N: Proly 94.8 1.8 3.9E-05 48.9 19.0 110 98-210 126-262 (414)
348 PF04053 Coatomer_WDAD: Coatom 94.7 1.2 2.6E-05 51.7 17.4 169 59-243 69-252 (443)
349 KOG3621 WD40 repeat-containing 94.6 0.36 7.9E-06 57.4 12.7 137 71-210 47-199 (726)
350 PF00780 CNH: CNH domain; Int 94.5 4.2 9E-05 43.0 19.8 141 67-212 5-169 (275)
351 KOG3617 WD40 and TPR repeat-co 94.3 0.093 2E-06 63.1 7.3 133 100-236 20-162 (1416)
352 PRK11138 outer membrane biogen 94.3 0.99 2.1E-05 50.9 15.4 142 69-213 120-279 (394)
353 PF15390 DUF4613: Domain of un 94.1 2.5 5.5E-05 49.9 18.0 149 91-242 52-220 (671)
354 PF06977 SdiA-regulated: SdiA- 94.1 9.9 0.00021 40.9 23.6 193 34-242 14-239 (248)
355 PRK13616 lipoprotein LpqB; Pro 94.0 1.4 3E-05 52.9 16.3 102 136-242 348-466 (591)
356 KOG0882 Cyclophilin-related pe 93.9 0.34 7.4E-06 55.1 10.3 137 76-213 119-310 (558)
357 PF10647 Gmad1: Lipoprotein Lp 93.9 3.1 6.8E-05 44.4 17.3 154 139-310 25-181 (253)
358 KOG1008 Uncharacterized conser 93.8 0.02 4.3E-07 67.0 0.4 152 96-252 57-224 (783)
359 PF15390 DUF4613: Domain of un 93.5 1.3 2.9E-05 52.2 14.4 141 93-243 17-175 (671)
360 COG3386 Gluconolactonase [Carb 93.2 11 0.00024 41.8 20.5 145 96-245 111-277 (307)
361 PF02897 Peptidase_S9_N: Proly 93.2 8 0.00017 43.7 20.1 163 79-243 150-344 (414)
362 PF05096 Glu_cyclase_2: Glutam 93.2 7.7 0.00017 42.1 18.6 111 98-212 47-161 (264)
363 PF10647 Gmad1: Lipoprotein Lp 93.1 3.7 8E-05 43.9 16.4 143 97-243 25-185 (253)
364 PF14583 Pectate_lyase22: Olig 93.0 20 0.00044 40.9 22.5 137 102-243 42-207 (386)
365 PF04841 Vps16_N: Vps16, N-ter 92.9 21 0.00046 41.0 24.9 184 38-236 67-272 (410)
366 PF03178 CPSF_A: CPSF A subuni 92.8 1.9 4.2E-05 47.1 14.0 135 107-247 42-196 (321)
367 PRK10115 protease 2; Provision 92.7 22 0.00047 43.7 24.1 183 44-243 129-333 (686)
368 PF14783 BBS2_Mid: Ciliary BBS 92.7 4.2 9E-05 38.5 13.9 66 140-207 2-70 (111)
369 KOG3617 WD40 and TPR repeat-co 92.6 0.24 5.2E-06 59.8 6.8 112 44-168 18-131 (1416)
370 KOG3630 Nuclear pore complex, 92.6 0.67 1.5E-05 57.8 10.7 145 97-243 102-263 (1405)
371 COG3386 Gluconolactonase [Carb 91.7 12 0.00026 41.4 18.4 104 93-198 160-274 (307)
372 COG3490 Uncharacterized protei 91.7 24 0.00052 38.8 20.0 168 66-243 45-244 (366)
373 KOG2395 Protein involved in va 91.6 1.4 3E-05 51.4 11.1 134 106-245 344-493 (644)
374 PF12234 Rav1p_C: RAVE protein 91.5 3.3 7.2E-05 49.9 14.7 110 98-208 32-156 (631)
375 KOG2395 Protein involved in va 91.4 1.8 3.8E-05 50.5 11.8 135 72-208 349-500 (644)
376 TIGR02604 Piru_Ver_Nterm putat 91.2 6.2 0.00014 44.3 16.0 100 96-198 14-142 (367)
377 KOG4649 PQQ (pyrrolo-quinoline 90.8 6.2 0.00013 42.7 14.2 104 108-214 24-129 (354)
378 PF12894 Apc4_WD40: Anaphase-p 90.4 0.72 1.6E-05 36.9 5.4 34 95-129 11-44 (47)
379 PF14870 PSII_BNR: Photosynthe 90.2 10 0.00022 42.0 16.0 144 93-239 142-291 (302)
380 PF05694 SBP56: 56kDa selenium 90.2 4 8.7E-05 47.0 13.1 164 79-246 168-396 (461)
381 cd00216 PQQ_DH Dehydrogenases 88.7 22 0.00048 41.6 18.3 98 109-214 303-430 (488)
382 KOG2444 WD40 repeat protein [G 88.4 2.2 4.8E-05 45.1 8.7 104 65-169 66-178 (238)
383 KOG2079 Vacuolar assembly/sort 88.1 1.3 2.9E-05 55.1 7.9 70 95-167 130-202 (1206)
384 COG3490 Uncharacterized protei 87.8 23 0.0005 39.0 16.0 159 141-310 71-241 (366)
385 KOG2444 WD40 repeat protein [G 87.8 1.6 3.4E-05 46.2 7.2 105 106-210 69-179 (238)
386 cd00216 PQQ_DH Dehydrogenases 87.7 13 0.00028 43.5 15.6 106 69-178 61-193 (488)
387 KOG2079 Vacuolar assembly/sort 87.1 2 4.4E-05 53.6 8.6 100 106-207 98-202 (1206)
388 PF12894 Apc4_WD40: Anaphase-p 86.6 1.6 3.6E-05 34.9 5.1 34 137-172 11-44 (47)
389 PF06433 Me-amine-dh_H: Methyl 86.5 46 0.00099 37.5 18.1 114 100-214 188-326 (342)
390 PF07569 Hira: TUP1-like enhan 85.0 4.6 0.0001 42.4 9.1 63 149-211 21-98 (219)
391 PF12234 Rav1p_C: RAVE protein 84.6 14 0.0003 44.9 13.8 104 139-243 31-148 (631)
392 KOG4499 Ca2+-binding protein R 83.6 44 0.00095 36.0 15.3 121 69-198 138-273 (310)
393 TIGR02604 Piru_Ver_Nterm putat 83.5 30 0.00065 38.9 15.5 98 97-198 73-202 (367)
394 PF08596 Lgl_C: Lethal giant l 83.3 16 0.00036 41.8 13.3 76 131-208 80-173 (395)
395 PF03178 CPSF_A: CPSF A subuni 83.3 75 0.0016 34.7 20.4 120 118-242 3-146 (321)
396 KOG4499 Ca2+-binding protein R 83.1 37 0.0008 36.5 14.4 142 96-242 109-273 (310)
397 PRK10115 protease 2; Provision 82.9 92 0.002 38.4 20.3 111 96-209 127-256 (686)
398 PF13449 Phytase-like: Esteras 82.6 61 0.0013 35.9 17.1 143 96-240 20-231 (326)
399 PF10214 Rrn6: RNA polymerase 82.5 1.4E+02 0.003 37.3 25.2 148 94-243 78-268 (765)
400 TIGR03074 PQQ_membr_DH membran 82.3 24 0.00051 44.0 14.9 108 106-213 193-349 (764)
401 PF14655 RAB3GAP2_N: Rab3 GTPa 82.1 8.8 0.00019 44.3 10.5 83 92-176 304-406 (415)
402 PF14781 BBS2_N: Ciliary BBSom 80.9 33 0.00072 33.7 12.4 109 101-211 4-128 (136)
403 PF04841 Vps16_N: Vps16, N-ter 80.8 85 0.0019 36.1 18.0 101 95-211 216-317 (410)
404 TIGR03606 non_repeat_PQQ dehyd 79.5 1.2E+02 0.0026 35.6 18.6 104 96-200 30-166 (454)
405 PF10313 DUF2415: Uncharacteri 79.0 5 0.00011 31.7 5.0 32 138-169 1-34 (43)
406 PRK13684 Ycf48-like protein; P 78.8 1.1E+02 0.0025 33.9 20.1 140 95-239 172-318 (334)
407 TIGR03075 PQQ_enz_alc_DH PQQ-d 78.6 51 0.0011 39.2 15.7 55 160-214 441-496 (527)
408 PF14870 PSII_BNR: Photosynthe 78.0 1.2E+02 0.0026 33.7 18.7 109 133-242 140-251 (302)
409 PF06433 Me-amine-dh_H: Methyl 77.0 15 0.00032 41.3 9.9 79 99-178 241-330 (342)
410 COG5167 VID27 Protein involved 75.7 58 0.0013 38.5 14.2 137 103-245 475-625 (776)
411 COG3204 Uncharacterized protei 74.8 1.4E+02 0.0031 33.1 17.7 161 36-209 80-264 (316)
412 PF05694 SBP56: 56kDa selenium 73.8 56 0.0012 38.1 13.5 174 69-243 87-331 (461)
413 KOG1897 Damage-specific DNA bi 72.9 1.3E+02 0.0027 38.3 16.9 139 97-239 776-929 (1096)
414 TIGR03075 PQQ_enz_alc_DH PQQ-d 72.6 30 0.00065 41.2 11.7 74 117-192 441-516 (527)
415 PLN00033 photosystem II stabil 72.1 1.9E+02 0.0042 33.3 17.9 137 98-240 241-387 (398)
416 KOG3630 Nuclear pore complex, 71.1 1.2E+02 0.0026 39.2 16.2 120 76-198 121-262 (1405)
417 COG5167 VID27 Protein involved 70.2 42 0.00091 39.6 11.5 61 149-209 572-633 (776)
418 PF11715 Nup160: Nucleoporin N 69.7 15 0.00033 43.3 8.5 73 105-177 156-257 (547)
419 KOG2280 Vacuolar assembly/sort 69.6 96 0.0021 38.3 14.6 52 159-211 63-115 (829)
420 KOG2247 WD40 repeat-containing 68.6 0.91 2E-05 52.4 -1.9 142 94-240 33-176 (615)
421 PF14761 HPS3_N: Hermansky-Pud 67.4 1.1E+02 0.0025 32.3 13.1 102 108-211 29-166 (215)
422 TIGR03118 PEPCTERM_chp_1 conse 66.7 1.1E+02 0.0024 34.2 13.3 112 97-209 24-171 (336)
423 TIGR03032 conserved hypothetic 66.2 63 0.0014 36.2 11.4 107 121-235 189-316 (335)
424 PF10168 Nup88: Nuclear pore c 65.5 3.5E+02 0.0076 33.8 21.4 74 96-170 85-181 (717)
425 PF10313 DUF2415: Uncharacteri 65.2 22 0.00048 28.1 5.7 31 96-126 1-34 (43)
426 PF10214 Rrn6: RNA polymerase 64.8 99 0.0021 38.6 14.3 111 97-210 147-278 (765)
427 PF07995 GSDH: Glucose / Sorbo 64.5 80 0.0017 35.1 12.3 101 97-199 3-133 (331)
428 KOG2377 Uncharacterized conser 64.0 92 0.002 36.5 12.5 104 136-243 65-173 (657)
429 TIGR02276 beta_rpt_yvtn 40-res 63.7 33 0.00072 25.4 6.4 40 105-145 1-41 (42)
430 PF14781 BBS2_N: Ciliary BBSom 63.6 1.2E+02 0.0025 30.0 11.5 85 143-232 4-101 (136)
431 KOG1520 Predicted alkaloid syn 62.2 2.5E+02 0.0055 32.2 15.5 176 63-243 70-284 (376)
432 PF14655 RAB3GAP2_N: Rab3 GTPa 62.1 26 0.00057 40.5 8.1 83 682-772 6-99 (415)
433 COG3823 Glutamine cyclotransfe 61.3 63 0.0014 34.3 9.8 28 106-133 55-84 (262)
434 COG4257 Vgb Streptogramin lyas 61.2 1.9E+02 0.0042 32.0 13.7 132 96-242 62-207 (353)
435 PF07569 Hira: TUP1-like enhan 61.1 47 0.001 34.9 9.2 65 105-171 20-98 (219)
436 PF05935 Arylsulfotrans: Aryls 60.6 2.5E+02 0.0054 33.0 16.0 106 101-211 153-304 (477)
437 TIGR03074 PQQ_membr_DH membran 59.8 4.3E+02 0.0093 33.2 18.4 145 69-214 260-483 (764)
438 TIGR03606 non_repeat_PQQ dehyd 57.9 2.9E+02 0.0063 32.5 15.6 55 136-191 28-90 (454)
439 PF12768 Rax2: Cortical protei 57.0 1.3E+02 0.0027 33.1 11.9 115 117-234 16-147 (281)
440 KOG2280 Vacuolar assembly/sort 56.1 3.6E+02 0.0079 33.6 16.1 90 117-209 64-157 (829)
441 KOG1898 Splicing factor 3b, su 55.6 4E+02 0.0086 34.5 16.7 120 118-242 854-993 (1205)
442 TIGR02276 beta_rpt_yvtn 40-res 55.4 43 0.00093 24.7 5.8 39 149-187 2-41 (42)
443 PF02333 Phytase: Phytase; In 54.7 3.9E+02 0.0084 30.8 17.2 193 5-210 59-292 (381)
444 PF08596 Lgl_C: Lethal giant l 54.4 81 0.0018 36.2 10.3 98 110-207 228-334 (395)
445 PF05935 Arylsulfotrans: Aryls 53.4 4.4E+02 0.0094 31.0 17.0 85 109-198 117-208 (477)
446 COG1520 FOG: WD40-like repeat 53.3 1.3E+02 0.0029 33.5 11.8 102 108-211 69-174 (370)
447 PF10168 Nup88: Nuclear pore c 52.7 1.6E+02 0.0034 36.7 13.0 73 138-212 85-183 (717)
448 PF08728 CRT10: CRT10; InterP 52.6 1.5E+02 0.0032 36.8 12.4 110 96-207 101-245 (717)
449 PF14761 HPS3_N: Hermansky-Pud 52.0 61 0.0013 34.3 8.0 51 191-243 29-79 (215)
450 KOG1916 Nuclear protein, conta 50.7 16 0.00034 45.5 3.9 113 99-213 184-328 (1283)
451 KOG4441 Proteins containing BT 50.6 5.3E+02 0.012 31.2 17.7 105 106-212 380-503 (571)
452 PF03088 Str_synth: Strictosid 50.1 1.2E+02 0.0026 27.6 8.7 42 157-198 34-75 (89)
453 PHA03098 kelch-like protein; P 48.1 3.3E+02 0.0071 32.0 14.4 101 106-211 389-514 (534)
454 KOG4460 Nuclear pore complex, 48.0 67 0.0014 38.1 8.2 77 97-173 105-203 (741)
455 PF07995 GSDH: Glucose / Sorbo 46.6 1.6E+02 0.0034 32.8 10.9 102 139-243 3-133 (331)
456 PLN00033 photosystem II stabil 46.3 5.2E+02 0.011 29.8 16.4 106 95-205 280-396 (398)
457 COG1520 FOG: WD40-like repeat 46.1 4.6E+02 0.01 29.2 14.7 110 67-179 66-182 (370)
458 KOG1916 Nuclear protein, conta 45.0 26 0.00056 43.7 4.6 100 73-173 199-328 (1283)
459 KOG2377 Uncharacterized conser 45.0 1.4E+02 0.0031 35.0 10.0 114 95-211 66-188 (657)
460 KOG4460 Nuclear pore complex, 45.0 2E+02 0.0044 34.3 11.4 74 139-213 105-203 (741)
461 PF12657 TFIIIC_delta: Transcr 44.3 1.3E+02 0.0027 30.2 8.8 31 139-169 87-122 (173)
462 smart00020 Tryp_SPc Trypsin-li 43.6 28 0.00061 35.1 4.1 71 665-747 29-111 (229)
463 PHA02713 hypothetical protein; 43.5 2.6E+02 0.0057 33.5 12.8 62 149-211 463-536 (557)
464 TIGR03032 conserved hypothetic 43.1 5.4E+02 0.012 29.1 14.2 72 106-181 212-303 (335)
465 PRK13684 Ycf48-like protein; P 43.0 5.1E+02 0.011 28.8 18.0 102 137-242 172-277 (334)
466 PF05096 Glu_cyclase_2: Glutam 42.5 4.9E+02 0.011 28.5 16.7 119 77-199 108-250 (264)
467 PF11715 Nup160: Nucleoporin N 42.1 51 0.0011 39.0 6.5 40 97-136 216-259 (547)
468 PF07250 Glyoxal_oxid_N: Glyox 41.6 1.3E+02 0.0028 32.4 8.8 83 162-244 48-138 (243)
469 PF08953 DUF1899: Domain of un 41.1 12 0.00025 32.2 0.7 33 20-52 3-35 (65)
470 PF07250 Glyoxal_oxid_N: Glyox 40.5 2.1E+02 0.0045 30.9 10.1 123 120-243 49-189 (243)
471 smart00036 CNH Domain found in 39.4 3.8E+02 0.0083 29.4 12.4 59 106-168 12-73 (302)
472 KOG2247 WD40 repeat-containing 39.1 20 0.00044 41.9 2.4 163 68-236 86-264 (615)
473 PF08728 CRT10: CRT10; InterP 38.5 1.5E+02 0.0032 36.8 9.5 87 149-235 113-222 (717)
474 COG4590 ABC-type uncharacteriz 37.4 1.9E+02 0.0042 34.0 9.6 105 106-211 279-389 (733)
475 KOG4441 Proteins containing BT 37.0 5.2E+02 0.011 31.2 13.9 103 106-212 284-408 (571)
476 KOG1900 Nuclear pore complex, 35.9 1E+03 0.023 31.6 16.4 107 94-203 77-202 (1311)
477 KOG1898 Splicing factor 3b, su 35.4 9.8E+02 0.021 31.2 15.7 140 97-243 879-1038(1205)
478 smart00564 PQQ beta-propeller 34.3 84 0.0018 22.0 4.2 25 109-133 8-32 (33)
479 PF14727 PHTB1_N: PTHB1 N-term 34.2 8.1E+02 0.018 28.6 15.4 141 106-251 36-202 (418)
480 PRK13615 lipoprotein LpqB; Pro 34.2 9E+02 0.019 29.3 15.1 138 99-241 337-487 (557)
481 PF14269 Arylsulfotran_2: Aryl 33.0 4.2E+02 0.0091 29.2 11.4 71 98-168 146-220 (299)
482 COG4257 Vgb Streptogramin lyas 32.9 7.4E+02 0.016 27.7 13.8 101 139-240 63-164 (353)
483 COG5290 IkappaB kinase complex 32.6 2.7E+02 0.0057 35.0 10.1 93 142-238 251-351 (1243)
484 PF10584 Proteasome_A_N: Prote 31.9 18 0.0004 24.9 0.3 9 602-610 7-15 (23)
485 smart00564 PQQ beta-propeller 31.4 99 0.0021 21.7 4.2 26 151-176 7-32 (33)
486 PHA02713 hypothetical protein; 31.0 1E+03 0.022 28.6 18.4 100 106-209 351-489 (557)
487 KOG3616 Selective LIM binding 29.2 1.2E+02 0.0025 37.6 6.4 101 136-239 13-113 (1636)
488 PF01731 Arylesterase: Arylest 29.0 2E+02 0.0044 26.0 6.7 47 161-209 37-85 (86)
489 PF13449 Phytase-like: Esteras 29.0 8.2E+02 0.018 27.0 19.5 99 97-197 86-232 (326)
490 PF01011 PQQ: PQQ enzyme repea 28.9 1.1E+02 0.0024 22.8 4.2 28 152-179 2-29 (38)
491 PF04651 Pox_A12: Poxvirus A12 27.7 40 0.00086 34.5 2.0 21 751-771 115-136 (189)
492 TIGR02171 Fb_sc_TIGR02171 Fibr 27.1 3.2E+02 0.007 34.8 9.9 80 159-240 328-415 (912)
493 PF01011 PQQ: PQQ enzyme repea 26.2 1.3E+02 0.0028 22.5 4.2 26 109-134 2-27 (38)
494 KOG3616 Selective LIM binding 26.0 1.4E+02 0.0031 36.9 6.4 108 95-207 14-125 (1636)
495 PHA03098 kelch-like protein; P 25.9 5.7E+02 0.012 30.0 11.7 101 106-211 294-417 (534)
496 KOG4659 Uncharacterized conser 25.8 3.5E+02 0.0075 35.9 9.8 42 293-340 660-701 (1899)
497 COG1506 DAP2 Dipeptidyl aminop 25.7 1.2E+03 0.027 28.2 14.7 144 92-243 56-235 (620)
498 PRK13615 lipoprotein LpqB; Pro 25.2 1.3E+03 0.028 28.0 17.0 99 141-243 337-436 (557)
499 PF12768 Rax2: Cortical protei 22.8 1E+03 0.023 26.1 12.5 88 79-167 16-122 (281)
500 PRK13614 lipoprotein LpqB; Pro 22.6 1.4E+03 0.031 27.7 16.6 104 66-170 390-520 (573)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5.2e-29 Score=268.36 Aligned_cols=256 Identities=20% Similarity=0.239 Sum_probs=216.9
Q ss_pred CCCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCC
Q 036953 21 LRRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVP 93 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~g 93 (792)
.-++..+||+.....+++ .++..+..+.|+|.. .+..+++++.|+++++|+.... .+.+
T Consensus 194 swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~--------------~~~~lat~s~Dgtvklw~~~~e~~l~~l~g 259 (459)
T KOG0272|consen 194 SWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVD--------------SDLNLATASADGTVKLWKLSQETPLQDLEG 259 (459)
T ss_pred ecCCceeEeecCCcceeEEEeccccceeeEEEccCC--------------CccceeeeccCCceeeeccCCCcchhhhhc
Confidence 356677888776654444 566778888888873 3457788899999999998764 6789
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
|...|..++|+|+|++|++++.|.+-++||+.++..+....||...|.+++|++ |+.+++||+.|..-++||+++++++
T Consensus 260 H~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~i 338 (459)
T KOG0272|consen 260 HLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCI 338 (459)
T ss_pred chhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecC-CCceeeccCccchhheeecccCcEE
Confidence 999999999999999999999999999999999999988899999999999999 9999999999999999999999999
Q ss_pred EEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 174 GSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 174 ~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
..+ +|..+|.+|+|+|+|..|++|+ |+.++|||++..+... .+..|..-|+.|+|+|++.+++++++.+
T Consensus 339 m~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---~ipAH~nlVS~Vk~~p~~g~fL~TasyD------ 409 (459)
T KOG0272|consen 339 MFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---TIPAHSNLVSQVKYSPQEGYFLVTASYD------ 409 (459)
T ss_pred EEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---ecccccchhhheEecccCCeEEEEcccC------
Confidence 988 5999999999999999999999 5569999999888643 6778999999999999666666666533
Q ss_pred CceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccccccccc
Q 036953 252 SSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLH 331 (792)
Q Consensus 252 ~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q 331 (792)
...++|...+..+ +..+.||...|+++++++||.+|+
T Consensus 410 ----------------~t~kiWs~~~~~~------~ksLaGHe~kV~s~Dis~d~~~i~--------------------- 446 (459)
T KOG0272|consen 410 ----------------NTVKIWSTRTWSP------LKSLAGHEGKVISLDISPDSQAIA--------------------- 446 (459)
T ss_pred ----------------cceeeecCCCccc------chhhcCCccceEEEEeccCCceEE---------------------
Confidence 2344454444333 234667999999999999999999
Q ss_pred ccCCCCCcccccccccc
Q 036953 332 LQSDSNVEQDGTVPSME 348 (792)
Q Consensus 332 ~~~~~sgs~D~tv~p~~ 348 (792)
+++||+|+..|.
T Consensus 447 -----t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 447 -----TSSFDRTIKLWR 458 (459)
T ss_pred -----EeccCceeeecc
Confidence 899999999885
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.4e-26 Score=242.52 Aligned_cols=256 Identities=20% Similarity=0.250 Sum_probs=212.9
Q ss_pred CCCceEeeeccccee---eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-----CcCC
Q 036953 22 RRRARNVSRLLAHRE---ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----PLVP 93 (792)
Q Consensus 22 ~s~~r~V~~l~~~re---ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----~L~g 93 (792)
.....++|+...+-. .+.+..-|.+++|+||++.+++| +.+++|++||.+++ .|.+
T Consensus 135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG----------------~~dg~I~lwdpktg~~~g~~l~g 198 (480)
T KOG0271|consen 135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASG----------------SKDGSIRLWDPKTGQQIGRALRG 198 (480)
T ss_pred CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcc----------------ccCCeEEEecCCCCCcccccccC
Confidence 344678898766533 33566689999999999877666 68899999998876 5789
Q ss_pred CCCCeEEEEEcC-----CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 94 PPRSTIAAAFSP-----DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 94 H~~~V~sLafSP-----DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
|.+.|++++|-| ..++|++++.||.|+|||+..+.++..+.+|+.+|+|++|-- ..+|++++.|++||+|+..
T Consensus 199 H~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~ 276 (480)
T KOG0271|consen 199 HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRAL 276 (480)
T ss_pred cccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEcc
Confidence 999999999987 567999999999999999999999999999999999999973 6899999999999999999
Q ss_pred CCcEEEEe-ccCCCeeEEEEc-----------CCCc-------------------------EEEEEcCCe-EEEEECCCC
Q 036953 169 TSECIGSC-DFYRPIASIAFH-----------AEGE-------------------------LLAVASGHK-LYIWPYNNK 210 (792)
Q Consensus 169 tg~~v~t~-~h~s~V~sVafS-----------pdG~-------------------------~LasgSdd~-V~IWDlrt~ 210 (792)
.|.+...+ +|...|+.++.+ +.++ .|++|+|+. +.+|+-...
T Consensus 277 dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~ 356 (480)
T KOG0271|consen 277 DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKS 356 (480)
T ss_pred chhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccc
Confidence 99998888 588889888765 3343 499999765 999998666
Q ss_pred CcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcc
Q 036953 211 EEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLM 290 (792)
Q Consensus 211 ~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l 290 (792)
+.. .....+|..-|+.|.|+||++++++++-+ ..+.+|.+.+|.++..++
T Consensus 357 kkp--i~rmtgHq~lVn~V~fSPd~r~IASaSFD-----------------------kSVkLW~g~tGk~lasfR----- 406 (480)
T KOG0271|consen 357 KKP--ITRMTGHQALVNHVSFSPDGRYIASASFD-----------------------KSVKLWDGRTGKFLASFR----- 406 (480)
T ss_pred ccc--hhhhhchhhheeeEEECCCccEEEEeecc-----------------------cceeeeeCCCcchhhhhh-----
Confidence 532 23456789999999999999966655533 367788888887755554
Q ss_pred cCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 291 SSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 291 ~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
||..+|+.++++.|.|++| ++|.|.|+.-|++-.-
T Consensus 407 -GHv~~VYqvawsaDsRLlV--------------------------S~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 407 -GHVAAVYQVAWSADSRLLV--------------------------SGSKDSTLKVWDVRTK 441 (480)
T ss_pred -hccceeEEEEeccCccEEE--------------------------EcCCCceEEEEEeeee
Confidence 5999999999999999999 8999999999997654
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.6e-25 Score=237.38 Aligned_cols=266 Identities=17% Similarity=0.204 Sum_probs=198.8
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
+...+.++.|+|+++ .|++++-|.++|+||..+. +.++|...|.|++|+|||+.||+|+.
T Consensus 114 H~e~Vl~~~fsp~g~----------------~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGS----------------RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred CCCcEEEEEecCCCc----------------eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc
Confidence 444566666766655 4555578899999999876 46899999999999999999999999
Q ss_pred CCeEEEEECCCCcEE-EEecCCCCCcEEEEEcc----CCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcC
Q 036953 116 DHTVKIIDCQTGNCL-KVLSGHRRTPWVVRFHP----LRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHA 189 (792)
Q Consensus 116 DGtVrIWDl~tgk~v-~~L~gH~~~VtsVafSP----~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSp 189 (792)
||+|++||..+|+++ ..|.+|+..|++++|.| ....+|++++.||+|+|||+..++++..+ +|..+|+|+.|--
T Consensus 178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG 257 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG 257 (480)
T ss_pred CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC
Confidence 999999999988754 67899999999999987 24678999999999999999999999887 6999999999964
Q ss_pred CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC-CC--ceeeecCCCcccC
Q 036953 190 EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS-DS--SMTRATSPGYLRY 265 (792)
Q Consensus 190 dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~-d~--~~~l~t~sg~~~~ 265 (792)
+ .+|++++ |.+|++|+...+.... .+.+|...|+.++++-+. .+-++........ .. .........|...
T Consensus 258 ~-gliySgS~DrtIkvw~a~dG~~~r---~lkGHahwvN~lalsTdy--~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~ 331 (480)
T KOG0271|consen 258 E-GLIYSGSQDRTIKVWRALDGKLCR---ELKGHAHWVNHLALSTDY--VLRTGAFDHTGRKPKSFSEEQKKALERYEAV 331 (480)
T ss_pred C-ceEEecCCCceEEEEEccchhHHH---hhcccchheeeeeccchh--hhhccccccccccCCChHHHHHHHHHHHHHh
Confidence 4 4888888 5559999999887544 567799999999998543 3333332211111 00 0000111112111
Q ss_pred -CCCceEEEEecCCCEEEEee------ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCC
Q 036953 266 -PPPAVFVANAQSGDHVSLAA------ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNV 338 (792)
Q Consensus 266 -p~~~~~l~~~ssG~~~~l~s------~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sg 338 (792)
......++.++++-.+.++. ....+.+|...|..|.|||||++|+ ++
T Consensus 332 ~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IA--------------------------Sa 385 (480)
T KOG0271|consen 332 LKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIA--------------------------SA 385 (480)
T ss_pred hccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEE--------------------------Ee
Confidence 11223444445544455544 2235678999999999999999999 89
Q ss_pred ccccccccccccCCC
Q 036953 339 EQDGTVPSMETFPVI 353 (792)
Q Consensus 339 s~D~tv~p~~~~~~~ 353 (792)
|+|+.|..|+--.|.
T Consensus 386 SFDkSVkLW~g~tGk 400 (480)
T KOG0271|consen 386 SFDKSVKLWDGRTGK 400 (480)
T ss_pred ecccceeeeeCCCcc
Confidence 999999999977773
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.93 E-value=1.3e-23 Score=218.78 Aligned_cols=264 Identities=15% Similarity=0.197 Sum_probs=213.5
Q ss_pred CCCCCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC---CCeEEEEeccCCCcC
Q 036953 19 NHLRRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE---AESLRHLSAKYCPLV 92 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~---d~sIrvWd~~t~~L~ 92 (792)
+....+..-||+.-+..+.. .....|...+++|+++.++||.++... .++.... ++.+++ ...+.
T Consensus 72 SaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C-----siy~ls~~d~~g~~~v----~r~l~ 142 (343)
T KOG0286|consen 72 SASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC-----SIYPLSTRDAEGNVRV----SRELA 142 (343)
T ss_pred eeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee-----EEEeccccccccccee----eeeec
Confidence 34566778899886654443 566789999999999999999855444 5555542 222322 23578
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
+|...+.|+.|-. ..+|++++.|.++.+||+.+++.+..|.+|.+.|.++.++|.+++.+++|+-|++.+|||++.+.+
T Consensus 143 gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c 221 (343)
T KOG0286|consen 143 GHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC 221 (343)
T ss_pred CccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce
Confidence 9999999999986 667999999999999999999999999999999999999998999999999999999999999999
Q ss_pred EEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 173 IGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 173 v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
+++| .|++.|+++.|.|+|.-|++|+++. .++||++..++.. ......-...|++|+|+..|+.|+++..++.
T Consensus 222 ~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a-~ys~~~~~~gitSv~FS~SGRlLfagy~d~~---- 296 (343)
T KOG0286|consen 222 VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELA-VYSHDSIICGITSVAFSKSGRLLFAGYDDFT---- 296 (343)
T ss_pred eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEe-eeccCcccCCceeEEEcccccEEEeeecCCc----
Confidence 9999 5999999999999999999999766 9999999987653 1222223568999999999997776654543
Q ss_pred CCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccc
Q 036953 251 DSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASL 330 (792)
Q Consensus 251 d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~ 330 (792)
..+|+.-.++..... .||..+|.++.++|||.-+.
T Consensus 297 -------------------c~vWDtlk~e~vg~L------~GHeNRvScl~~s~DG~av~-------------------- 331 (343)
T KOG0286|consen 297 -------------------CNVWDTLKGERVGVL------AGHENRVSCLGVSPDGMAVA-------------------- 331 (343)
T ss_pred -------------------eeEeeccccceEEEe------eccCCeeEEEEECCCCcEEE--------------------
Confidence 444554455443333 35999999999999999999
Q ss_pred cccCCCCCcccccccccc
Q 036953 331 HLQSDSNVEQDGTVPSME 348 (792)
Q Consensus 331 q~~~~~sgs~D~tv~p~~ 348 (792)
+||.|.++.-|.
T Consensus 332 ------TgSWDs~lriW~ 343 (343)
T KOG0286|consen 332 ------TGSWDSTLRIWA 343 (343)
T ss_pred ------ecchhHheeecC
Confidence 899999998873
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=6.4e-25 Score=236.91 Aligned_cols=234 Identities=23% Similarity=0.309 Sum_probs=205.1
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC-CCCEEEEEeCCCeEEEEECCCC
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL-RSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~-dg~lLaSgS~DgtVrLWDl~tg 170 (792)
.+-.++|..+.|+.|++.|++|+.+|.++||+..+...+.+|.+|...|.++.|+|. ++..++||+.||++++|++.+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 356788999999999999999999999999999999999999999999999999995 3679999999999999999998
Q ss_pred cEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----
Q 036953 171 ECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE----- 243 (792)
Q Consensus 171 ~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s----- 243 (792)
.++..+ +|...|..++|||+|++|++++ |.+.++||++++.+. ....+|...|.+++|+|||. ++++++
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El---L~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~ 327 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL---LLQEGHSKGVFSIAFQPDGS-LAATGGLDSLG 327 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhh---HhhcccccccceeEecCCCc-eeeccCccchh
Confidence 888888 5889999999999999999999 555999999999864 35678999999999999999 666665
Q ss_pred -eCccccCCCceeeecCCC---cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECC-CCcEEEEcc
Q 036953 244 -VNDLDSSDSSMTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSID-DSRIDLQHA 313 (792)
Q Consensus 244 -~~dLrs~d~~~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~Sp-DGr~lv~~~ 313 (792)
+||++++...+.+..... .+.|.|....++..++++..+++. .+.++..|...|..|.|+| .|++|+
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~--- 404 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLV--- 404 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEE---
Confidence 899999999888876554 456788888888877776655554 6778899999999999998 688999
Q ss_pred ccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 314 SRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 314 ~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
|++||.|+.-|-.-...|.
T Consensus 405 -----------------------TasyD~t~kiWs~~~~~~~ 423 (459)
T KOG0272|consen 405 -----------------------TASYDNTVKIWSTRTWSPL 423 (459)
T ss_pred -----------------------EcccCcceeeecCCCcccc
Confidence 9999999999987777665
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.92 E-value=8.2e-24 Score=216.23 Aligned_cols=256 Identities=16% Similarity=0.226 Sum_probs=206.3
Q ss_pred CCcEEEEEeCCCeEEEEeccCCCc---CCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc--EEEEecCCCCCcE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCPL---VPPP-RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPW 141 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~L---~gH~-~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk--~v~~L~gH~~~Vt 141 (792)
....|++.+.|.+||.|...++.. ..|. ..|+.+...||++.|++++.. .|++||+++++ ++.+|.+|.+.|+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceE
Confidence 445788999999999999998842 3454 469999999999999998876 59999999875 6899999999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEe
Q 036953 142 VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
.+.|.. ++++++||++||++||||++...+.+.+.+.++|+++..+|+...|+++. ++.|++||+....... ....
T Consensus 88 aVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~--~liP 164 (311)
T KOG0315|consen 88 AVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTH--ELIP 164 (311)
T ss_pred EEEEee-cCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccc--ccCC
Confidence 999999 99999999999999999999999999999999999999999999999988 4559999998775433 1223
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe-----eCccccCCCc------eeeecCCCc---ccCCCCceEEEEecCCCEEEEeec
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSSDSS------MTRATSPGY---LRYPPPAVFVANAQSGDHVSLAAE 286 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~d~~------~~l~t~sg~---~~~p~~~~~l~~~ssG~~~~l~s~ 286 (792)
.....|.++...|||..+++... .|++-..... .+++...+| ..+.+....++..++++..+++..
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~ 244 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT 244 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence 34578999999999998877544 5655432222 223333443 335667777777777777666552
Q ss_pred ------cCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 287 ------LPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 287 ------l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
...+++|..+||+++||.||+||+ +++.|.++.+|+...++
T Consensus 245 ~~~~kle~~l~gh~rWvWdc~FS~dg~Ylv--------------------------Tassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 245 DDFFKLELVLTGHQRWVWDCAFSADGEYLV--------------------------TASSDHTARLWDLSAGK 291 (311)
T ss_pred CCceeeEEEeecCCceEEeeeeccCccEEE--------------------------ecCCCCceeecccccCc
Confidence 234678999999999999999999 99999999999987774
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.92 E-value=1.8e-24 Score=247.58 Aligned_cols=249 Identities=22% Similarity=0.324 Sum_probs=209.8
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCC--------e------------EEEEeccC----CCcCCCC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAE--------S------------LRHLSAKY----CPLVPPP 95 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~--------s------------IrvWd~~t----~~L~gH~ 95 (792)
..+-+++..++++++++++|..++.+ .+|+....+ . +.+.|... ..+.+|.
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i-----~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSV-----RVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEE-----EEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 34568899999999999999866666 555544211 1 11122111 1478999
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
++|+.+.|+|+.++|++++.|++|++|.+.+..++..++||..+|+.+.|+| .+-+++|++.|++-++|.....++++.
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRi 530 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRI 530 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhh
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999999988
Q ss_pred e-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 176 C-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 176 ~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
+ +|.+.|.|+.|||+..|+++||.++ |++||..++...+ .+.+|.++|.+++|+|+|++|++++.+.
T Consensus 531 faghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~GH~~~V~al~~Sp~Gr~LaSg~ed~-------- 599 (707)
T KOG0263|consen 531 FAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTGHKGPVTALAFSPCGRYLASGDEDG-------- 599 (707)
T ss_pred hcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEE---EecCCCCceEEEEEcCCCceEeecccCC--------
Confidence 8 6999999999999999999999655 9999999998754 6678999999999999999887776544
Q ss_pred eeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccccccccccc
Q 036953 254 MTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQ 333 (792)
Q Consensus 254 ~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~ 333 (792)
.+.+|+...|..+. .+.+|.+.|.++.||.||..|+
T Consensus 600 ---------------~I~iWDl~~~~~v~------~l~~Ht~ti~SlsFS~dg~vLa----------------------- 635 (707)
T KOG0263|consen 600 ---------------LIKIWDLANGSLVK------QLKGHTGTIYSLSFSRDGNVLA----------------------- 635 (707)
T ss_pred ---------------cEEEEEcCCCcchh------hhhcccCceeEEEEecCCCEEE-----------------------
Confidence 56778777765533 3456999999999999999999
Q ss_pred CCCCCccccccccccccCC
Q 036953 334 SDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 334 ~~~sgs~D~tv~p~~~~~~ 352 (792)
+|+-|.+|..||..-.
T Consensus 636 ---sgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 636 ---SGGADNSVRLWDLTKV 651 (707)
T ss_pred ---ecCCCCeEEEEEchhh
Confidence 8999999999986544
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.91 E-value=2.3e-23 Score=224.18 Aligned_cols=255 Identities=16% Similarity=0.150 Sum_probs=202.0
Q ss_pred cEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCC-CCcEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHR-RTPWVVR 144 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~-~~VtsVa 144 (792)
++|++++..+.+.+|+.... .+..|...|.++.|++++.+++||+.+|.||+|+.+-.. ++.+++|. ..|++++
T Consensus 109 RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdla 187 (464)
T KOG0284|consen 109 RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLA 187 (464)
T ss_pred ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheec
Confidence 36667777788888887544 357899999999999999999999999999999976444 55666655 9999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h 222 (792)
|+| ++..+++|+.|++|+|||....+....+ +|.-.|.+++|||...+|++++++. |++||.+++.++. ....|
T Consensus 188 fSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~---tlh~H 263 (464)
T KOG0284|consen 188 FSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA---TLHGH 263 (464)
T ss_pred cCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh---hhhhc
Confidence 999 8889999999999999999988776666 5888899999999999999999666 9999999999754 66789
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCCc--eeeecCCCc------c--cCCCCceEEEEecCCCEEEEeec----cC
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS--MTRATSPGY------L--RYPPPAVFVANAQSGDHVSLAAE----LP 288 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~--~~l~t~sg~------~--~~p~~~~~l~~~ssG~~~~l~s~----l~ 288 (792)
+..|..+.|+|++++|++.+.+..++..|.+ ..+.+..++ . ....+.++...+.+|...+.... +.
T Consensus 264 KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 264 KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence 9999999999999988887776666555544 122222222 2 22445677777777777666553 11
Q ss_pred -cccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCcccccccccccc-CCCCC
Q 036953 289 -LMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETF-PVIPP 355 (792)
Q Consensus 289 -~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~-~~~p~ 355 (792)
.-..|...||++++.|=|.+|+ +|+.|+|+..|.-. ||++.
T Consensus 344 ~i~~AHd~~iwsl~~hPlGhil~--------------------------tgsnd~t~rfw~r~rp~d~~ 386 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLAYHPLGHILA--------------------------TGSNDRTVRFWTRNRPGDKN 386 (464)
T ss_pred CCCcccccceeeeeccccceeEe--------------------------ecCCCcceeeeccCCCCCcc
Confidence 2235899999999999999999 89999999988743 44443
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.91 E-value=1.4e-22 Score=210.07 Aligned_cols=200 Identities=19% Similarity=0.290 Sum_probs=161.0
Q ss_pred CCCceEeeecccc--------eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----
Q 036953 22 RRRARNVSRLLAH--------REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---- 89 (792)
Q Consensus 22 ~s~~r~V~~l~~~--------rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---- 89 (792)
..+..-+|++... |.+..+.+++..+..++++. ..++++.|+++++||..++
T Consensus 36 rDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~----------------~alS~swD~~lrlWDl~~g~~t~ 99 (315)
T KOG0279|consen 36 RDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGN----------------FALSASWDGTLRLWDLATGESTR 99 (315)
T ss_pred cceEEEEEEeccCccccCceeeeeeccceEecceEEccCCc----------------eEEeccccceEEEEEecCCcEEE
Confidence 3444556766443 33334455555555555544 5567788999999999865
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCC--CCCcEEEEEccCC-CCEEEEEeCCCeEEEEE
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH--RRTPWVVRFHPLR-SEILASGSLDHEVRLWD 166 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH--~~~VtsVafSP~d-g~lLaSgS~DgtVrLWD 166 (792)
+|.+|...|.+++|++|.+.+++|+.|++|++||+.. .+..++..+ .+.|.+++|+|.. ..+|++++.|++||+||
T Consensus 100 ~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWn 178 (315)
T KOG0279|consen 100 RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWN 178 (315)
T ss_pred EEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEc
Confidence 6889999999999999999999999999999999864 455555433 7899999999932 78999999999999999
Q ss_pred CCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 167 ANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 167 l~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+++.+....+ +|.+.++.+.++|||.+.++|+ ++.+.+||++.++.. ..+.+...|.+++|+|+.-.|.+..
T Consensus 179 l~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l----ysl~a~~~v~sl~fspnrywL~~at 252 (315)
T KOG0279|consen 179 LRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL----YSLEAFDIVNSLCFSPNRYWLCAAT 252 (315)
T ss_pred cCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee----EeccCCCeEeeEEecCCceeEeecc
Confidence 9999888777 6999999999999999999999 555999999998864 4677899999999999887665433
No 10
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.90 E-value=2.1e-22 Score=210.34 Aligned_cols=253 Identities=13% Similarity=0.136 Sum_probs=204.4
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEecc-----CCCcCCCCCCeEEEEEcCCCCEEEEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAK-----YCPLVPPPRSTIAAAFSPDGRTLAST 113 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~-----t~~L~gH~~~V~sLafSPDG~~LaSG 113 (792)
.+...+.+..|+|++..+++| +.|..|.+|+.. ...+++|.+.|..+.|.+|++.|+++
T Consensus 45 gh~geI~~~~F~P~gs~~aSg----------------G~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~ 108 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASG----------------GSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSC 108 (338)
T ss_pred CCcceEEEEEECCCCCeEeec----------------CCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEe
Confidence 466789999999998877666 456666666643 23577999999999999999999999
Q ss_pred ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcE
Q 036953 114 HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGEL 193 (792)
Q Consensus 114 S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~ 193 (792)
+.|++|+.||+.+|++++.+++|.+.|..+.-+.-+..++.|++.|+++|+||++++.+++++...-.++++.|..++..
T Consensus 109 gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~q 188 (338)
T KOG0265|consen 109 GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQ 188 (338)
T ss_pred cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccc
Confidence 99999999999999999999999999999986555668899999999999999999999999998999999999999999
Q ss_pred EEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----ee-eecCCC-----
Q 036953 194 LAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----MT-RATSPG----- 261 (792)
Q Consensus 194 LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~~-l~t~sg----- 261 (792)
+.+|+ |+.|++||+++..... ...+|.++|+.+..+|+|.+++.-+-+..++.|+.+ .. +.-..+
T Consensus 189 v~sggIdn~ikvWd~r~~d~~~---~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf 265 (338)
T KOG0265|consen 189 VISGGIDNDIKVWDLRKNDGLY---TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF 265 (338)
T ss_pred eeeccccCceeeeccccCcceE---EeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence 99998 7779999999888543 678899999999999999988875555444444432 11 111111
Q ss_pred -----cccCCCCceEEEEecCCCEEEEeec-----cCcccCCCceEEEeEECCCCcEEE
Q 036953 262 -----YLRYPPPAVFVANAQSGDHVSLAAE-----LPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 262 -----~~~~p~~~~~l~~~ssG~~~~l~s~-----l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
...|.+...++..++.++....+.. +..+.||.+.|..++|.|.--+|+
T Consensus 266 eknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iil 324 (338)
T KOG0265|consen 266 EKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIIL 324 (338)
T ss_pred hhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEE
Confidence 2345566666666666666555542 235678999999999999999998
No 11
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.90 E-value=1e-21 Score=223.92 Aligned_cols=237 Identities=24% Similarity=0.311 Sum_probs=182.0
Q ss_pred EEEEeCCCeEEEEec------cCCCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC-CCCcEEEEecCCCCCcEEEE
Q 036953 72 LVSWVEAESLRHLSA------KYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDC-QTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 72 L~S~s~d~sIrvWd~------~t~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl-~tgk~v~~L~gH~~~VtsVa 144 (792)
+++...++.+++|+. ....+.+|...|.+++|+||++++++++.|++|+|||+ ..+.+++++.+|...|++++
T Consensus 174 l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~ 253 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVA 253 (456)
T ss_pred EEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEE
Confidence 555567777888877 23345789999999999999999999999999999999 55689999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h 222 (792)
|+| +++++++|+.|++|++||+++++++..+. |...|++++|++++.+|++++ |+.|+|||+.++... .......+
T Consensus 254 f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~ 331 (456)
T KOG0266|consen 254 FSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGA 331 (456)
T ss_pred ecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-eeecccCC
Confidence 999 77999999999999999999999999994 889999999999999999999 455999999998832 00112222
Q ss_pred CC--CeEEEEEccCCCeEEEEEeeCccccCC-----CceeeecCCCc--c----cCCCCceEEEEecCCCEEEEee----
Q 036953 223 RR--SLRAVHFHPHAAPFVLTAEVNDLDSSD-----SSMTRATSPGY--L----RYPPPAVFVANAQSGDHVSLAA---- 285 (792)
Q Consensus 223 ~~--sVtsVafSPdG~~LlaS~s~~dLrs~d-----~~~~l~t~sg~--~----~~p~~~~~l~~~ssG~~~~l~s---- 285 (792)
.. +++.++|+|+++++++...+..++.|+ ..........- . ........+..+..+..+.++.
T Consensus 332 ~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 332 ENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred CCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc
Confidence 22 699999999999999877754444433 33333222221 0 0122344444555555555554
Q ss_pred -ccCcccCC-CceEEEeEECCCCcEEE
Q 036953 286 -ELPLMSSL-PFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 286 -~l~~l~gh-~~~VwdV~~SpDGr~lv 310 (792)
.+..+.+| ...+.++.+++...+++
T Consensus 412 ~~~~~l~~h~~~~~~~~~~~~~~~~~~ 438 (456)
T KOG0266|consen 412 GILQRLEGHSKAAVSDLSSHPTENLIA 438 (456)
T ss_pred chhhhhcCCCCCceeccccCCCcCeee
Confidence 33466778 89999999999999998
No 12
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=1.4e-23 Score=223.09 Aligned_cols=230 Identities=14% Similarity=0.143 Sum_probs=196.8
Q ss_pred CCcCCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 89 CPLVPPPRSTIAAAFSPDG-RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG-~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
+.|.+|.++|.|++-+|.. ..+++|+.||.|+|||+...++...|++|.+.|.+++++. ..+++++.|++|+.|.+
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeeeec
Confidence 4678999999999999954 8999999999999999999999999999999999999975 78999999999999998
Q ss_pred CCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe----
Q 036953 168 NTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE---- 243 (792)
Q Consensus 168 ~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s---- 243 (792)
.. .++.++...+.+..++.+..+..+++++.. |.|||.+...... ...-..+.|.++.|+|.+..++++|.
T Consensus 137 ~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~-i~IWD~~R~~Pv~---smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 137 DG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQ-IDIWDEQRDNPVS---SMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred cC-CcceeeeccccccccccccccccccccCce-eeecccccCCccc---eeecCCCceeEEecCCCcchheeeeccCCc
Confidence 76 588888888999999999999999998754 9999998776433 23336788999999999999998884
Q ss_pred --eCccccCCC--ceeeecCCCcccCCCCceEEEEecCCCEEEEee------ccCcccCCCceEEEeEECCCCcEEEEcc
Q 036953 244 --VNDLDSSDS--SMTRATSPGYLRYPPPAVFVANAQSGDHVSLAA------ELPLMSSLPFLIVPSVSIDDSRIDLQHA 313 (792)
Q Consensus 244 --~~dLrs~d~--~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s------~l~~l~gh~~~VwdV~~SpDGr~lv~~~ 313 (792)
++|++.... ++.+....+...|.|+...|+.++++.++.+.. .+.++.+|..+|++|+|||+|++||
T Consensus 212 IvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efv--- 288 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFV--- 288 (433)
T ss_pred eEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhc---
Confidence 566665443 356777788888877999999999988855444 7789999999999999999999999
Q ss_pred ccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 314 SRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 314 ~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+||||+||.-..+--+
T Consensus 289 -----------------------sgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 289 -----------------------SGSYDKSIRIFPVNHG 304 (433)
T ss_pred -----------------------cccccceEEEeecCCC
Confidence 9999999987665554
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.90 E-value=5.6e-23 Score=235.37 Aligned_cols=185 Identities=23% Similarity=0.335 Sum_probs=169.1
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
.+..|+++++|.++|+|...+. ...||..+|+++.|+|-|-+|||++.|++.++|.....++++.|.+|-..|.|+
T Consensus 462 d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv 541 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCV 541 (707)
T ss_pred cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceE
Confidence 4567899999999999999876 357999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEec
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLK 221 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~ 221 (792)
.||| +..++++||.|++||+||+.+|..++.| +|.++|.+++|+|+|++|++|+.+. |.|||+..++... ...+
T Consensus 542 ~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~---~l~~ 617 (707)
T KOG0263|consen 542 SFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK---QLKG 617 (707)
T ss_pred EECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchh---hhhc
Confidence 9999 9999999999999999999999999999 6999999999999999999999555 9999999988654 5667
Q ss_pred CCCCeEEEEEccCCCeEEEEEeeCccccCCCceee
Q 036953 222 TRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTR 256 (792)
Q Consensus 222 h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l 256 (792)
|.+.|+++.|+.+|..|++++.+..|+.||.....
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 89999999999999988888888888888765443
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.89 E-value=1.5e-21 Score=213.17 Aligned_cols=247 Identities=16% Similarity=0.181 Sum_probs=204.9
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
+.++.+++++|+.+|.++++| ..++.+++|+.... .|..|+++|.++.|+.+|.+|++++.
T Consensus 233 ~~nkdVT~L~Wn~~G~~LatG----------------~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~v 296 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDGTLLATG----------------SEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGV 296 (524)
T ss_pred CccCCcceEEecCCCCeEEEe----------------ecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccC
Confidence 455678888998887766555 78999999998755 57789999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEE
Q 036953 116 DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELL 194 (792)
Q Consensus 116 DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~L 194 (792)
|+++.|||..++.....|.-|..+-.+|.|-. .+.+++++.|+.|+++.+....|+.++ +|.+.|.++.|+|.|.+|
T Consensus 297 D~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~--~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LL 374 (524)
T KOG0273|consen 297 DGTTILWDAHTGTVKQQFEFHSAPALDVDWQS--NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLL 374 (524)
T ss_pred CccEEEEeccCceEEEeeeeccCCccceEEec--CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceE
Confidence 99999999999999999999998878899974 678999999999999999999999888 699999999999999999
Q ss_pred EEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEE
Q 036953 195 AVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVA 273 (792)
Q Consensus 195 asgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~ 273 (792)
+++++|. ++||+........ .+..|...|+.+.|+|+|. + .++.+........ .....+.+|
T Consensus 375 aS~SdD~TlkiWs~~~~~~~~---~l~~Hskei~t~~wsp~g~--v----~~n~~~~~~l~sa--------s~dstV~lw 437 (524)
T KOG0273|consen 375 ASCSDDGTLKIWSMGQSNSVH---DLQAHSKEIYTIKWSPTGP--V----TSNPNMNLMLASA--------SFDSTVKLW 437 (524)
T ss_pred EEecCCCeeEeeecCCCcchh---hhhhhccceeeEeecCCCC--c----cCCCcCCceEEEe--------ecCCeEEEE
Confidence 9999665 9999987766433 4567889999999999986 1 1222221111111 122457888
Q ss_pred EecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 274 NAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 274 ~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+..+|.+++.+. .|...|++++|||+|++++ +|+.|+.|.+|.+-.+
T Consensus 438 dv~~gv~i~~f~------kH~~pVysvafS~~g~ylA--------------------------sGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 438 DVESGVPIHTLM------KHQEPVYSVAFSPNGRYLA--------------------------SGSLDGCVHIWSTKTG 484 (524)
T ss_pred EccCCceeEeec------cCCCceEEEEecCCCcEEE--------------------------ecCCCCeeEeccccch
Confidence 888888877653 3999999999999999999 8999999999998777
No 15
>PTZ00421 coronin; Provisional
Probab=99.88 E-value=8.6e-21 Score=217.88 Aligned_cols=272 Identities=17% Similarity=0.201 Sum_probs=192.7
Q ss_pred CCCceEeeecccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC-CCeEEEEeccCC-------CcCC
Q 036953 22 RRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE-AESLRHLSAKYC-------PLVP 93 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~-d~sIrvWd~~t~-------~L~g 93 (792)
.++|||||....+++.+.....+....|+...- +++... ...+.|.. ++...++....+ .+.+
T Consensus 3 ~sk~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~-~~~n~~--------~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~G 73 (493)
T PTZ00421 3 VSRFRHTQGVPARPDRHFLNVTPSTALWDCSNT-IACNDR--------FIAVPWQQLGSTAVLKHTDYGKLASNPPILLG 73 (493)
T ss_pred cccccccccccCCcccceeccccccccCCCCCc-EeECCc--------eEEEEEecCCceEEeeccccccCCCCCceEeC
Confidence 478999999999999998888888888875532 333321 11122221 122223322222 3678
Q ss_pred CCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEE
Q 036953 94 PPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG-------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLW 165 (792)
Q Consensus 94 H~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg-------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLW 165 (792)
|.+.|.+++|+| ++++|++|+.|++|+|||+.++ +.+..+.+|...|.+++|+|...++|++++.|++|++|
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 999999999999 8999999999999999999765 35678899999999999999445799999999999999
Q ss_pred ECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCC-CeEEEEEccCCCeEEEEE
Q 036953 166 DANTSECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRR-SLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 166 Dl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~-sVtsVafSPdG~~LlaS~ 242 (792)
|+++++.+..+. |...|.+++|+|+|.+|++++ |+.|+|||+++++... ....|.. .+..+.|.+++..+++++
T Consensus 154 Dl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~---tl~~H~~~~~~~~~w~~~~~~ivt~G 230 (493)
T PTZ00421 154 DVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS---SVEAHASAKSQRCLWAKRKDLIITLG 230 (493)
T ss_pred ECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE---EEecCCCCcceEEEEcCCCCeEEEEe
Confidence 999999888875 888999999999999999999 5559999999877432 3344544 345788999988777655
Q ss_pred eeCccccCCCceeeecCCCcccCCCCceEEEEecCCCE-EEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCC
Q 036953 243 EVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDH-VSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSN 321 (792)
Q Consensus 243 s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~-~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~ 321 (792)
... . ....+.+|+...... ..... .+....++...|++||+.++
T Consensus 231 ~s~---s----------------~Dr~VklWDlr~~~~p~~~~~-----~d~~~~~~~~~~d~d~~~L~----------- 275 (493)
T PTZ00421 231 CSK---S----------------QQRQIMLWDTRKMASPYSTVD-----LDQSSALFIPFFDEDTNLLY----------- 275 (493)
T ss_pred cCC---C----------------CCCeEEEEeCCCCCCceeEec-----cCCCCceEEEEEcCCCCEEE-----------
Confidence 210 0 001233444322111 11110 01234566678999999887
Q ss_pred ccccccccccccCCCCCc-cccccccccccCCCCC
Q 036953 322 MQIEPSASLHLQSDSNVE-QDGTVPSMETFPVIPP 355 (792)
Q Consensus 322 v~~~~s~~~q~~~~~sgs-~D~tv~p~~~~~~~p~ 355 (792)
.++ .|.+|.-||+..+++-
T Consensus 276 ---------------lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 276 ---------------IGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred ---------------EEEeCCCeEEEEEeeCCceE
Confidence 333 4888888888776543
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.88 E-value=1.1e-19 Score=200.77 Aligned_cols=269 Identities=17% Similarity=0.199 Sum_probs=197.8
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC------CCcCCCCCCeEEEEEcCCCCEEEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY------CPLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t------~~L~gH~~~V~sLafSPDG~~LaS 112 (792)
.+...++...++|+|-++++| ...+++|+|+... .++....++|..++|+.|+++|+.
T Consensus 57 EH~~~vtVAkySPsG~yiASG----------------D~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~a 120 (603)
T KOG0318|consen 57 EHAHQVTVAKYSPSGFYIASG----------------DVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAA 120 (603)
T ss_pred cccceeEEEEeCCCceEEeec----------------CCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEE
Confidence 344566777788887766666 3455666666543 234556788999999999999887
Q ss_pred EEC--C--CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEE
Q 036953 113 THG--D--HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAF 187 (792)
Q Consensus 113 GS~--D--GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVaf 187 (792)
.+. + |.+.+|| +|..+..+.||...|.++.|-|..+-.++||++|++|.+|+=.--+...++ .|...|+++.|
T Consensus 121 vGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy 198 (603)
T KOG0318|consen 121 VGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY 198 (603)
T ss_pred EecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE
Confidence 654 2 3455565 677788999999999999999988889999999999999986555555555 48889999999
Q ss_pred cCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----eeeecCCC
Q 036953 188 HAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----MTRATSPG 261 (792)
Q Consensus 188 SpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~~l~t~sg 261 (792)
+|||++|++.+ |+++.|||-.+++...+......|.+.|+++.|+||+..+++++.+..++.|+-. .++.....
T Consensus 199 sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 199 SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCc
Confidence 99999999988 6669999999998765222234699999999999999999987775554444422 11111110
Q ss_pred ------cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccc
Q 036953 262 ------YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASL 330 (792)
Q Consensus 262 ------~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~ 330 (792)
-.-|. ..+.+.+..+| .+++.. -+.+++||.-.|..+..++||++|+
T Consensus 279 v~dqqvG~lWq-kd~lItVSl~G-~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~-------------------- 336 (603)
T KOG0318|consen 279 VEDQQVGCLWQ-KDHLITVSLSG-TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY-------------------- 336 (603)
T ss_pred hhceEEEEEEe-CCeEEEEEcCc-EEEEecccCCChhheecccccceeEEEEcCCCCEEE--------------------
Confidence 11122 33333443333 333332 3347789999999999999999999
Q ss_pred cccCCCCCccccccccccccCCC
Q 036953 331 HLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 331 q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
+|+||..|.-|+...|.
T Consensus 337 ------SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 337 ------SGSYDGHINSWDSGSGT 353 (603)
T ss_pred ------eeccCceEEEEecCCcc
Confidence 99999999999988883
No 17
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.88 E-value=2.9e-20 Score=186.55 Aligned_cols=254 Identities=20% Similarity=0.306 Sum_probs=190.5
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEE
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaS 112 (792)
+..+...+.++.|+++++++.++ ..++.+++|+.... .+..|...+..+.|+++++.|++
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~----------------~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 68 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATG----------------SGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEe----------------ecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEE
Confidence 34456778899999987655444 44677777777644 35678888999999999999999
Q ss_pred EECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCC
Q 036953 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEG 191 (792)
Q Consensus 113 GS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG 191 (792)
++.|+.|++||+.+++.+..+..|...|.++.|++ +++++++++.|+.|++||+++++.+..+. +...+.+++|+|++
T Consensus 69 ~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 147 (289)
T cd00200 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG 147 (289)
T ss_pred EcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC
Confidence 99999999999998888888999999999999999 77888888889999999999888888775 77889999999999
Q ss_pred cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc-----eeeecCCC---c
Q 036953 192 ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS-----MTRATSPG---Y 262 (792)
Q Consensus 192 ~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~-----~~l~t~sg---~ 262 (792)
.++++++ ++.|++||++..+... ....+...+.++.|+|+++.+++++.+..+..++.. ..+....+ .
T Consensus 148 ~~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~ 224 (289)
T cd00200 148 TFVASSSQDGTIKLWDLRTGKCVA---TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS 224 (289)
T ss_pred CEEEEEcCCCcEEEEEccccccce---eEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEE
Confidence 9999998 6779999998766433 344677799999999999888888775555544432 11111111 2
Q ss_pred ccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEE
Q 036953 263 LRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 263 ~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
..+.+....+.....+..+.+.. ....+..|...|.++.++++|++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 225 VAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred EEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEE
Confidence 22333233333333222333322 1223456888999999999999998
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.88 E-value=8.5e-21 Score=196.86 Aligned_cols=208 Identities=16% Similarity=0.208 Sum_probs=174.5
Q ss_pred CCcEEEEEeCCCeEEEEeccCC---------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC---------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR 138 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~---------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~ 138 (792)
+...+++.+.|+++.+|+.... .+.||...|..+..++||++.++++.|+++++||+.+++..+.|.+|..
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~ 106 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTK 106 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCC
Confidence 3456778888888999987522 4789999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-c--cCCCeeEEEEcCC--CcEEEEEcCCe-EEEEECCCCCc
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-D--FYRPIASIAFHAE--GELLAVASGHK-LYIWPYNNKEE 212 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~--h~s~V~sVafSpd--G~~LasgSdd~-V~IWDlrt~~~ 212 (792)
.|.+++|++ |...++||+.|++|++||+... +..++ . +...|.++.|+|. ..+|++++.|+ |++||+++.+.
T Consensus 107 dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l 184 (315)
T KOG0279|consen 107 DVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL 184 (315)
T ss_pred ceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch
Confidence 999999999 9999999999999999999754 44444 2 3789999999998 67899999554 99999998875
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccC
Q 036953 213 ASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSS 292 (792)
Q Consensus 213 ~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~g 292 (792)
.. ...+|...++.+.++|||. ++++++-. ....+|+..+++++....
T Consensus 185 ~~---~~~gh~~~v~t~~vSpDGs-lcasGgkd----------------------g~~~LwdL~~~k~lysl~------- 231 (315)
T KOG0279|consen 185 RT---TFIGHSGYVNTVTVSPDGS-LCASGGKD----------------------GEAMLWDLNEGKNLYSLE------- 231 (315)
T ss_pred hh---ccccccccEEEEEECCCCC-EEecCCCC----------------------ceEEEEEccCCceeEecc-------
Confidence 43 5677999999999999999 44443311 346778888887755444
Q ss_pred CCceEEEeEECCCCcEEE
Q 036953 293 LPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 293 h~~~VwdV~~SpDGr~lv 310 (792)
|...|-.++|+|+.-+|.
T Consensus 232 a~~~v~sl~fspnrywL~ 249 (315)
T KOG0279|consen 232 AFDIVNSLCFSPNRYWLC 249 (315)
T ss_pred CCCeEeeEEecCCceeEe
Confidence 778899999999999988
No 19
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.87 E-value=2.8e-20 Score=193.97 Aligned_cols=249 Identities=16% Similarity=0.211 Sum_probs=198.8
Q ss_pred cccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCC
Q 036953 31 LLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPD 106 (792)
Q Consensus 31 l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPD 106 (792)
+..+|.++.+..++..+.|+++++ .+++.+.|+.+.+||..+.. +.-....|..++|+|.
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr----------------~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPS 108 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSR----------------RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPS 108 (343)
T ss_pred eeeEEEecccccceeeeEecCCcC----------------eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCC
Confidence 445678888888999999998866 55677888899999886541 2334567999999999
Q ss_pred CCEEEEEECCCeEEEEECCCC------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccC
Q 036953 107 GRTLASTHGDHTVKIIDCQTG------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFY 179 (792)
Q Consensus 107 G~~LaSGS~DGtVrIWDl~tg------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~ 179 (792)
|+.+|.|+-|+.+.||++.+. +..+.+.+|.+.+.++.|-+ ...|+|++-|.+.-+||+++++.+..| +|.
T Consensus 109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D~~ilT~SGD~TCalWDie~g~~~~~f~GH~ 186 (343)
T KOG0286|consen 109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--DNHILTGSGDMTCALWDIETGQQTQVFHGHT 186 (343)
T ss_pred CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC--CCceEecCCCceEEEEEcccceEEEEecCCc
Confidence 999999999999999999865 34567899999999999986 568899999999999999999999998 699
Q ss_pred CCeeEEEEcC-CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeee
Q 036953 180 RPIASIAFHA-EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRA 257 (792)
Q Consensus 180 s~V~sVafSp-dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~ 257 (792)
+.|.+++++| +++.|++|+ |...++||++.+...+ .+.+|...|++|+|.|+|.-+++++.+...+..|
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~q---tF~ghesDINsv~ffP~G~afatGSDD~tcRlyD------ 257 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQ---TFEGHESDINSVRFFPSGDAFATGSDDATCRLYD------ 257 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccCcceeE---eecccccccceEEEccCCCeeeecCCCceeEEEe------
Confidence 9999999999 899999998 5559999999997643 7788999999999999999776655433333222
Q ss_pred cCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCC
Q 036953 258 TSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSN 337 (792)
Q Consensus 258 t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~s 337 (792)
...+..+.++... .-.+.|.+++||-.||+++ .
T Consensus 258 -----------------lRaD~~~a~ys~~----~~~~gitSv~FS~SGRlLf--------------------------a 290 (343)
T KOG0286|consen 258 -----------------LRADQELAVYSHD----SIICGITSVAFSKSGRLLF--------------------------A 290 (343)
T ss_pred -----------------ecCCcEEeeeccC----cccCCceeEEEcccccEEE--------------------------e
Confidence 1222223333211 1345688899999999999 6
Q ss_pred CccccccccccccCCC
Q 036953 338 VEQDGTVPSMETFPVI 353 (792)
Q Consensus 338 gs~D~tv~p~~~~~~~ 353 (792)
|-.|.++-.||+..++
T Consensus 291 gy~d~~c~vWDtlk~e 306 (343)
T KOG0286|consen 291 GYDDFTCNVWDTLKGE 306 (343)
T ss_pred eecCCceeEeeccccc
Confidence 7778888999988885
No 20
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.87 E-value=3e-20 Score=211.43 Aligned_cols=211 Identities=18% Similarity=0.263 Sum_probs=171.9
Q ss_pred CCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCC
Q 036953 22 RRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPP 94 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH 94 (792)
.++...+|.++....+. .-...+..++|+..|.+++.|. ..-+.+.+|+-... +..+|
T Consensus 285 ssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~---------------~klgQLlVweWqsEsYVlKQQgH 349 (893)
T KOG0291|consen 285 SSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGC---------------SKLGQLLVWEWQSESYVLKQQGH 349 (893)
T ss_pred cCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcC---------------CccceEEEEEeeccceeeecccc
Confidence 44455577666654443 4445778888888888877663 12234455554433 35689
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
...+++++++|||+++++|+.||+|||||..++-|..+|..|+..|+.+.|+. .++.+++.+.||+|+.||+...+.-+
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfR 428 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFR 428 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceee
Confidence 99999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred EeccCC--CeeEEEEcCCCcEEEEEcCCe--EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 175 SCDFYR--PIASIAFHAEGELLAVASGHK--LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 175 t~~h~s--~V~sVafSpdG~~LasgSdd~--V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
+|.... ...+++.+|.|.++..|+-+. |++|++++++... .+.+|.++|.+++|+|++..|++++-+..++.|
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD---iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD---ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW 505 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee---hhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence 986544 467888899999999998555 9999999999654 667899999999999999966665556667766
Q ss_pred C
Q 036953 251 D 251 (792)
Q Consensus 251 d 251 (792)
+
T Consensus 506 ~ 506 (893)
T KOG0291|consen 506 D 506 (893)
T ss_pred E
Confidence 5
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.87 E-value=1e-20 Score=201.04 Aligned_cols=248 Identities=16% Similarity=0.217 Sum_probs=199.3
Q ss_pred CcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
+..+.+++.|+++++||+.+++ +.||...|..+++|+--.++++++.|+.|+-||+...+.++.+.||-..|.+++
T Consensus 163 n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~ 242 (460)
T KOG0285|consen 163 NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLD 242 (460)
T ss_pred ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEe
Confidence 4455666889999999999885 568999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h 222 (792)
.+| .-+.|+||+.|.++|+||+++...+..+ +|..+|.++.+.|....+++|+ |.+|++||++.++.. .....|
T Consensus 243 lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~---~tlt~h 318 (460)
T KOG0285|consen 243 LHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM---ITLTHH 318 (460)
T ss_pred ccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee---Eeeecc
Confidence 999 7889999999999999999999999888 5999999999999888899999 555999999998853 466778
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCCcee--eecCCC--------------c--ccCCCCceEEEEecCCCEEEEe
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMT--RATSPG--------------Y--LRYPPPAVFVANAQSGDHVSLA 284 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~--l~t~sg--------------~--~~~p~~~~~l~~~ssG~~~~l~ 284 (792)
...|++++.||... ++++++-++++.|+.... +...++ + ..-....+.+|+-.+|.+....
T Consensus 319 kksvral~lhP~e~-~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 319 KKSVRALCLHPKEN-LFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred cceeeEEecCCchh-hhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccc
Confidence 99999999999887 555666556665553311 111111 1 1113356777777777774444
Q ss_pred e---ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCcccccccccc
Q 036953 285 A---ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSME 348 (792)
Q Consensus 285 s---~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~ 348 (792)
. ....+. .+.-|...+|...|.-|+ ++..|+||.-|+
T Consensus 398 ~t~vqpGSl~-sEagI~as~fDktg~rli--------------------------t~eadKtIk~~k 437 (460)
T KOG0285|consen 398 QTIVQPGSLE-SEAGIFASCFDKTGSRLI--------------------------TGEADKTIKMYK 437 (460)
T ss_pred cccccCCccc-cccceeEEeecccCceEE--------------------------eccCCcceEEEe
Confidence 2 222232 566788888999988888 899999999887
No 22
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.86 E-value=2.4e-19 Score=217.01 Aligned_cols=252 Identities=17% Similarity=0.255 Sum_probs=184.3
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----C-------cCCCCCCeEEEEEcC-CC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----P-------LVPPPRSTIAAAFSP-DG 107 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~-------L~gH~~~V~sLafSP-DG 107 (792)
+...+..++|++++.+ +++++.|+.|++|+.... . ...+...|.+++|++ ++
T Consensus 482 ~~~~V~~i~fs~dg~~----------------latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 545 (793)
T PLN00181 482 SSNLVCAIGFDRDGEF----------------FATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIK 545 (793)
T ss_pred CCCcEEEEEECCCCCE----------------EEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCC
Confidence 4445677777777654 445567788888875421 0 012345789999998 57
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEE
Q 036953 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAF 187 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVaf 187 (792)
.+|++++.||+|+|||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.|++|++||+++++++..+.....+.++.|
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~ 625 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQF 625 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEE
Confidence 89999999999999999999999999999999999999975788999999999999999999999888877788999999
Q ss_pred c-CCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCce--------eee
Q 036953 188 H-AEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSM--------TRA 257 (792)
Q Consensus 188 S-pdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~--------~l~ 257 (792)
+ +++.+|++|+ ++.|++||++..+.. ......|...|+++.|. ++..+++++.+..++.|+... .+.
T Consensus 626 ~~~~g~~latgs~dg~I~iwD~~~~~~~--~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~ 702 (793)
T PLN00181 626 PSESGRSLAFGSADHKVYYYDLRNPKLP--LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLH 702 (793)
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCCcc--ceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceE
Confidence 5 5789999998 556999999876532 23456788999999997 677777777766666555321 122
Q ss_pred cCCC------cccCCCCceEEEEecCCCEEEEeecc-C-----------------cccCCCceEEEeEECCCCcEEE
Q 036953 258 TSPG------YLRYPPPAVFVANAQSGDHVSLAAEL-P-----------------LMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 258 t~sg------~~~~p~~~~~l~~~ssG~~~~l~s~l-~-----------------~l~gh~~~VwdV~~SpDGr~lv 310 (792)
...+ ...+.+....++.+..+..+.++... . ....+...|.+++|+|+|..++
T Consensus 703 ~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lv 779 (793)
T PLN00181 703 SFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLV 779 (793)
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEE
Confidence 2222 22343344455555555554444310 0 0123556799999999999988
No 23
>PTZ00420 coronin; Provisional
Probab=99.86 E-value=9.7e-20 Score=211.34 Aligned_cols=305 Identities=13% Similarity=0.101 Sum_probs=205.1
Q ss_pred CCCceEeeecccceeeCCCCceeeeEEeeCCCceEeecC-CCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCC
Q 036953 22 RRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGP-SDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPR 96 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~-~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~ 96 (792)
-+.++|+|....+.. ....++....|..++ +++.. .....|+.. .++..+.+++|+.... .+.+|.+
T Consensus 4 ~~~~~~~~~~~~~~~--y~diri~~~~~~s~~--ia~n~~~~A~~w~~~----gGG~~gvI~L~~~~r~~~v~~L~gH~~ 75 (568)
T PTZ00420 4 VPLIKNLYPDPSNNL--FDDLRICSRVIDSCG--IACSSGFVAVPWEVE----GGGLIGAIRLENQMRKPPVIKLKGHTS 75 (568)
T ss_pred cchhhhcCCchhhCe--eccEEccccccCcee--EeeCCCeEEEEEEcC----CCCceeEEEeeecCCCceEEEEcCCCC
Confidence 378999998766543 555566677776543 22221 111111100 1234567888876543 4789999
Q ss_pred CeEEEEEcCC-CCEEEEEECCCeEEEEECCCCc--------EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 97 STIAAAFSPD-GRTLASTHGDHTVKIIDCQTGN--------CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 97 ~V~sLafSPD-G~~LaSGS~DGtVrIWDl~tgk--------~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
.|.+++|+|+ +.+|++|+.|++|+|||+.++. .+..+.+|...|.+++|+|....+|++++.|++|++||+
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl 155 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEEC
Confidence 9999999995 8899999999999999997642 345678999999999999933345689999999999999
Q ss_pred CCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeE-----EEEEccCCCeEEEE
Q 036953 168 NTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLR-----AVHFHPHAAPFVLT 241 (792)
Q Consensus 168 ~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVt-----sVafSPdG~~LlaS 241 (792)
++++.+..+.+...|.+++|+++|.+|++++ ++.|+|||+++++... ....|...+. ...|++++.+++++
T Consensus 156 ~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~---tl~gH~g~~~s~~v~~~~fs~d~~~IlTt 232 (568)
T PTZ00420 156 ENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS---SFHIHDGGKNTKNIWIDGLGGDDNYILST 232 (568)
T ss_pred CCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE---EEecccCCceeEEEEeeeEcCCCCEEEEE
Confidence 9998888787788899999999999999888 5569999999887532 3445655433 33456888877777
Q ss_pred EeeCccccCCCceeeecCCCcccCCCCceEEEEecC-CCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCC
Q 036953 242 AEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQS-GDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSS 320 (792)
Q Consensus 242 ~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ss-G~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg 320 (792)
+.+.. ....+.+|+... +..+.... +..+...++..+..++|.+++
T Consensus 233 G~d~~-------------------~~R~VkLWDlr~~~~pl~~~~----ld~~~~~L~p~~D~~tg~l~l---------- 279 (568)
T PTZ00420 233 GFSKN-------------------NMREMKLWDLKNTTSALVTMS----IDNASAPLIPHYDESTGLIYL---------- 279 (568)
T ss_pred EcCCC-------------------CccEEEEEECCCCCCceEEEE----ecCCccceEEeeeCCCCCEEE----------
Confidence 65431 001244555432 22222221 223556667777788899998
Q ss_pred CccccccccccccCCCCCccccccccccccCCCCC-CCCCCcCCCCCCCcCCCCCcccccccCccCccc
Q 036953 321 NMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP-GREGSVNDSFPNGIESGVSDYAVDAMDTDEMQP 388 (792)
Q Consensus 321 ~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (792)
+|+-|.+|.-|+...+... ..++. +.....+++. .|....|-|+-+-++-
T Consensus 280 ----------------sGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f-~Pkr~~dv~~cEi~R~ 330 (568)
T PTZ00420 280 ----------------IGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGF-LPKQICDVYKCEIGRV 330 (568)
T ss_pred ----------------EEECCCeEEEEEccCCcEEeecccc-cCCCccceEE-ccccccCchhhhHhHH
Confidence 7888999999998766322 22222 2222233332 3555666666655543
No 24
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.86 E-value=3.7e-19 Score=196.55 Aligned_cols=304 Identities=13% Similarity=0.151 Sum_probs=217.2
Q ss_pred CCCceEeeeccc-----ceeeCCCCceeeeEEeeCCCce-EeecCC-----CceeecCC---------------------
Q 036953 22 RRRARNVSRLLA-----HREISPKTKYVPKRQWVDASKL-KTCGPS-----DSSVRDAK--------------------- 69 (792)
Q Consensus 22 ~s~~r~V~~l~~-----~rels~~tk~V~s~aWspd~~l-la~G~~-----a~sv~d~~--------------------- 69 (792)
.++-+.||+... +.|+.+...++..+.|+.+++. .+.|.. ..+.+|.+
T Consensus 79 ~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~Kps 158 (603)
T KOG0318|consen 79 VSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPS 158 (603)
T ss_pred CcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCC
Confidence 566788998766 4556677788999999999876 444431 12223322
Q ss_pred --cEEEEEeCCCeEEEEeccC----CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec---CCCCCc
Q 036953 70 --RGLVSWVEAESLRHLSAKY----CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS---GHRRTP 140 (792)
Q Consensus 70 --~~L~S~s~d~sIrvWd~~t----~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~---gH~~~V 140 (792)
-+++++++|+++-.++..- ..+..|.+-|+|+.|+|||++|++.+.||+|.|||-.+++.+..|. +|++.|
T Consensus 159 RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsI 238 (603)
T KOG0318|consen 159 RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSI 238 (603)
T ss_pred CceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccE
Confidence 2577888888888887642 2457899999999999999999999999999999999999999998 899999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------------------------------------
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-------------------------------------------- 176 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-------------------------------------------- 176 (792)
.++.|+| |++.++|++.|+++|+||+.+.+++.++
T Consensus 239 falsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~ 317 (603)
T KOG0318|consen 239 FALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVIS 317 (603)
T ss_pred EEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheec
Confidence 9999999 9999999999999999999876543321
Q ss_pred ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCC----
Q 036953 177 DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD---- 251 (792)
Q Consensus 177 ~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d---- 251 (792)
+|...|+++..++++++|++++ |+.|.-||..++...+ ..-..|...|.+++-+..+. +++++-++.++.-+
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~--~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDR--LAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDN 394 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccc--cccccccceEEEEeecCCCc-EEEEecCCeEEEEecccC
Confidence 3555789999999999999999 5669999998887543 22345777777777765555 44444444333110
Q ss_pred ------------Ccee--------------------eecCCC-----------cccCCCCceEEEEecCCCEEEEee---
Q 036953 252 ------------SSMT--------------------RATSPG-----------YLRYPPPAVFVANAQSGDHVSLAA--- 285 (792)
Q Consensus 252 ------------~~~~--------------------l~t~sg-----------~~~~p~~~~~l~~~ssG~~~~l~s--- 285 (792)
.+.. ++...+ .....+....++++..+.++++..
T Consensus 395 ~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g 474 (603)
T KOG0318|consen 395 GYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG 474 (603)
T ss_pred cccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC
Confidence 0000 110000 122234445566666666666665
Q ss_pred ----ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 286 ----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 286 ----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
+......|..+|.+++|||||.+|+ .+-.-+-|-+|++...+..
T Consensus 475 ~~l~ee~~~~~h~a~iT~vaySpd~~yla--------------------------~~Da~rkvv~yd~~s~~~~ 522 (603)
T KOG0318|consen 475 DELKEEAKLLEHRAAITDVAYSPDGAYLA--------------------------AGDASRKVVLYDVASREVK 522 (603)
T ss_pred CcccceeeeecccCCceEEEECCCCcEEE--------------------------EeccCCcEEEEEcccCcee
Confidence 1224456889999999999999998 4444467778888777663
No 25
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=7.1e-20 Score=201.06 Aligned_cols=245 Identities=18% Similarity=0.236 Sum_probs=191.0
Q ss_pred CCceEeeecccce---eeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCC
Q 036953 23 RRARNVSRLLAHR---EISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPP 95 (792)
Q Consensus 23 s~~r~V~~l~~~r---els~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~ 95 (792)
+.-.++|...... .++-..+.+.+..|..||+++++| .+.+.++++|.++. .+.+|.
T Consensus 47 S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaG----------------D~sG~V~vfD~k~r~iLR~~~ah~ 110 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAG----------------DESGHVKVFDMKSRVILRQLYAHQ 110 (487)
T ss_pred ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEcc----------------CCcCcEEEeccccHHHHHHHhhcc
Confidence 3445666654432 233444567777777777777666 46778899996653 578999
Q ss_pred CCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEE
Q 036953 96 RSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECI 173 (792)
Q Consensus 96 ~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v 173 (792)
.+|..+.|+| ++..|++|+.|+.+++||+.+......+.+|+..|.+.+|+|.++.+++|||.||+||+||++.. ..+
T Consensus 111 apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v 190 (487)
T KOG0310|consen 111 APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV 190 (487)
T ss_pred CceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee
Confidence 9999999999 66778899999999999999888766889999999999999988889999999999999999987 788
Q ss_pred EEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 174 GSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 174 ~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
..+.|+.+|.++.+-|.|..|++++++.|++||+-++.... .....|...|+|+++..++..|++++-+..++..+
T Consensus 191 ~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll--~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd-- 266 (487)
T KOG0310|consen 191 VELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL--TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFD-- 266 (487)
T ss_pred EEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh--hhhhcccceEEEEEeecCCceEeecccccceEEEE--
Confidence 88999999999999999999999999999999998766432 33444899999999999998888777555444321
Q ss_pred eeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEcccc
Q 036953 254 MTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASR 315 (792)
Q Consensus 254 ~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~ 315 (792)
..+=+.++-.. .++.|++++++||++.++++-..
T Consensus 267 ---------------------~t~~Kvv~s~~-------~~~pvLsiavs~dd~t~viGmsn 300 (487)
T KOG0310|consen 267 ---------------------TTNYKVVHSWK-------YPGPVLSIAVSPDDQTVVIGMSN 300 (487)
T ss_pred ---------------------ccceEEEEeee-------cccceeeEEecCCCceEEEeccc
Confidence 11111122222 67788999999998888844333
No 26
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.1e-19 Score=184.69 Aligned_cols=259 Identities=19% Similarity=0.219 Sum_probs=189.8
Q ss_pred cceeeCCCCceeeeEEeeCC-CceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC-C-------CcCCCCCCeEEEEE
Q 036953 33 AHREISPKTKYVPKRQWVDA-SKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY-C-------PLVPPPRSTIAAAF 103 (792)
Q Consensus 33 ~~rels~~tk~V~s~aWspd-~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t-~-------~L~gH~~~V~sLaf 103 (792)
..+.++.++.++..++|+|- |. .|++++.|+.||+|+... . .-.+|++.|.+++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~----------------ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGV----------------ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW 69 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCce----------------EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee
Confidence 34455666678999999888 33 345556777788887762 1 12479999999999
Q ss_pred cCCCCEEEEEECCCeEEEEECCCC--cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC---cEEEEe-c
Q 036953 104 SPDGRTLASTHGDHTVKIIDCQTG--NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS---ECIGSC-D 177 (792)
Q Consensus 104 SPDG~~LaSGS~DGtVrIWDl~tg--k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg---~~v~t~-~ 177 (792)
+|.|++|++++.|.++.||.-..+ +++.+++||...|.+++|++ ++.+||+|+.|+.|-+|.+..+ +++..+ .
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 999999999999999999976543 68899999999999999999 9999999999999999998754 466666 5
Q ss_pred cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceee
Q 036953 178 FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTR 256 (792)
Q Consensus 178 h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l 256 (792)
|...|..+.|||...+|++++ |++|++|+-...........+.+|..+|.+++|++.|..++++..+..++.+.....+
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~ 228 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL 228 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc
Confidence 899999999999999999999 7779999887543333234566788899999999999988888887777776633222
Q ss_pred ec---CCCc-ccCCCCceEEEEecCCCEEEEeecc------------CcccCCCceEEEeEECCC-CcEEE
Q 036953 257 AT---SPGY-LRYPPPAVFVANAQSGDHVSLAAEL------------PLMSSLPFLIVPSVSIDD-SRIDL 310 (792)
Q Consensus 257 ~t---~sg~-~~~p~~~~~l~~~ssG~~~~l~s~l------------~~l~gh~~~VwdV~~SpD-Gr~lv 310 (792)
.. ...| ..|. .......+. ++.+.++... ....-|..-|..+.+.|. ...|+
T Consensus 229 ~~~~sr~~Y~v~W~-~~~IaS~gg-D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 229 SGMHSRALYDVPWD-NGVIASGGG-DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLA 297 (312)
T ss_pred chhcccceEeeeec-ccceEeccC-CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCcee
Confidence 11 1122 2233 222222222 2333444311 122347788999999994 33444
No 27
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.85 E-value=5.8e-21 Score=205.76 Aligned_cols=227 Identities=19% Similarity=0.309 Sum_probs=179.4
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCC-CCCeEEEEEcCCCCEEEEEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPP-PRSTIAAAFSPDGRTLASTH 114 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH-~~~V~sLafSPDG~~LaSGS 114 (792)
.+...|.++.|++++.. ++++..++.||+|+...+. +..| ...|.+++|+|+..+|++++
T Consensus 136 aHDs~Vr~m~ws~~g~w----------------miSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~S 199 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGTW----------------MISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCS 199 (464)
T ss_pred hhcccceeEEEccCCCE----------------EEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEec
Confidence 34456777777777654 4566789999999987552 3444 48999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcE
Q 036953 115 GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGEL 193 (792)
Q Consensus 115 ~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~ 193 (792)
.||+|+|||....++..++.||.-.|+++.||| ...++++++.|..|++||.++++|+.++ .|+..|..+.|++++++
T Consensus 200 dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~ 278 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNW 278 (464)
T ss_pred CCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCe
Confidence 999999999999999999999999999999999 7889999999999999999999999998 59999999999999999
Q ss_pred EEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-eCccccCCCc-----eeeec-CCC---c
Q 036953 194 LAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDLDSSDSS-----MTRAT-SPG---Y 262 (792)
Q Consensus 194 LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dLrs~d~~-----~~l~t-~sg---~ 262 (792)
|++++.|. ++++|+++.++.. ...+|+..|+++.|||-...|+++++ +..+..+.-. ..+.. ..+ .
T Consensus 279 Llt~skD~~~kv~DiR~mkEl~---~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iws 355 (464)
T KOG0284|consen 279 LLTGSKDQSCKVFDIRTMKELF---TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWS 355 (464)
T ss_pred eEEccCCceEEEEehhHhHHHH---HhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceee
Confidence 99999665 9999999666543 56679999999999998888888776 3333322211 11110 111 3
Q ss_pred ccCCCCceEEEEecCCCEEEEee
Q 036953 263 LRYPPPAVFVANAQSGDHVSLAA 285 (792)
Q Consensus 263 ~~~p~~~~~l~~~ssG~~~~l~s 285 (792)
+.|.+-.+.++.++.++...+..
T Consensus 356 l~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 356 LAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred eeccccceeEeecCCCcceeeec
Confidence 44556667777766666655555
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=1.2e-19 Score=193.53 Aligned_cols=240 Identities=19% Similarity=0.256 Sum_probs=192.2
Q ss_pred CCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-----CcCC
Q 036953 22 RRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----PLVP 93 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----~L~g 93 (792)
....+++|+..+..... .+++.+..++++..+ ..+++++.|-.+++|+..+. .+.+
T Consensus 128 ~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G----------------k~l~tcSsDl~~~LWd~~~~~~c~ks~~g 191 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERSLRGHTDSVFDISFDASG----------------KYLATCSSDLSAKLWDFDTFFRCIKSLIG 191 (406)
T ss_pred CCceEEEEEccchhhhhhhhccccceeEEEEecCc----------------cEEEecCCccchhheeHHHHHHHHHHhcC
Confidence 45567777766654322 344445555554443 46677788888999998764 5789
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
|...|.++.|-|.|.+|++++.|.+|+.|++.++-++++|.+|...|..++.+. |+.++++|+.|.+|++|-+.++++.
T Consensus 192 h~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~-DGti~As~s~dqtl~vW~~~t~~~k 270 (406)
T KOG0295|consen 192 HEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQ-DGTIIASCSNDQTLRVWVVATKQCK 270 (406)
T ss_pred cccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecC-CeeEEEecCCCceEEEEEeccchhh
Confidence 999999999999999999999999999999999999999999999999999998 9999999999999999999999988
Q ss_pred EEe-ccCCCeeEEEEcCC---------------CcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 174 GSC-DFYRPIASIAFHAE---------------GELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 174 ~t~-~h~s~V~sVafSpd---------------G~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
..+ .|+.+|.+++|-|. ++++.+++. ..|++||+.++.+. ..+.+|...|..++|+|.|+
T Consensus 271 ~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL---~tL~ghdnwVr~~af~p~Gk 347 (406)
T KOG0295|consen 271 AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL---FTLVGHDNWVRGVAFSPGGK 347 (406)
T ss_pred hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE---EEEecccceeeeeEEcCCCe
Confidence 887 58999999999763 258888884 45999999999854 46778999999999999999
Q ss_pred eEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 237 PFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 237 ~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+|++++.+.. +.+|+.....|.+..-. |+..|..++|.-+--+++
T Consensus 348 yi~ScaDDkt-----------------------lrvwdl~~~~cmk~~~a------h~hfvt~lDfh~~~p~Vv 392 (406)
T KOG0295|consen 348 YILSCADDKT-----------------------LRVWDLKNLQCMKTLEA------HEHFVTSLDFHKTAPYVV 392 (406)
T ss_pred EEEEEecCCc-----------------------EEEEEeccceeeeccCC------CcceeEEEecCCCCceEE
Confidence 8888876654 44455555555443332 666777777777766777
No 29
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.84 E-value=7.6e-21 Score=208.34 Aligned_cols=217 Identities=16% Similarity=0.256 Sum_probs=175.3
Q ss_pred CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 90 PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQT-GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 90 ~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~t-gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
.+.+|.+.|+++.|.| .+.+|++++.|+.|+||++.. ++++++|.+|..+|.+++|++ ++..++|++.|++|++||+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeecc
Confidence 5679999999999999 999999999999999999876 889999999999999999999 9999999999999999999
Q ss_pred CCCcEEEEeccCCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 168 NTSECIGSCDFYRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 168 ~tg~~v~t~~h~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
++|+++..+.....++++.|+|++ +.|++|+ +++|+.||+++++..+ ....|-+.|..+.|-++|++++++..+.
T Consensus 288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~F~~~g~rFissSDdk 364 (503)
T KOG0282|consen 288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDITFVDEGRRFISSSDDK 364 (503)
T ss_pred ccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhhheeeeEEccCCceEeeeccCc
Confidence 999999999999999999999999 6677776 5669999999998544 3455788999999999999999999988
Q ss_pred ccccCCCceeeecC--C--C-----cccCCCCceEEEEecCCCEEEEeecc--------CcccCCC--ceEEEeEECCCC
Q 036953 246 DLDSSDSSMTRATS--P--G-----YLRYPPPAVFVANAQSGDHVSLAAEL--------PLMSSLP--FLIVPSVSIDDS 306 (792)
Q Consensus 246 dLrs~d~~~~l~t~--s--g-----~~~~p~~~~~l~~~ssG~~~~l~s~l--------~~l~gh~--~~VwdV~~SpDG 306 (792)
.++.|+........ . . ++...+...+++.-+-++.+.++... ..++||. +.-..+.|||||
T Consensus 365 s~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 365 SVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred cEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence 88877655322111 1 0 12222233333333446666666522 2455664 556778999999
Q ss_pred cEEE
Q 036953 307 RIDL 310 (792)
Q Consensus 307 r~lv 310 (792)
++|+
T Consensus 445 ~~l~ 448 (503)
T KOG0282|consen 445 RTLC 448 (503)
T ss_pred CeEE
Confidence 9999
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.84 E-value=4.8e-19 Score=201.77 Aligned_cols=227 Identities=15% Similarity=0.232 Sum_probs=183.9
Q ss_pred cEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGD-HTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~D-GtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
..|+++-..+...++...... +.-....|..++|+..|.+|+.|+.. |.+.||+..+...+.+.++|...+++++
T Consensus 278 ~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~ 357 (893)
T KOG0291|consen 278 NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLA 357 (893)
T ss_pred eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEE
Confidence 345555555666666554332 22234569999999999999998764 8999999999998999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h 222 (792)
++| |+++++||+.||.||+||...+-|+.+| +|.+.|+.+.|+..|+.+++++ |++|+.||+.+.+.-+ ......
T Consensus 358 YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR--Tft~P~ 434 (893)
T KOG0291|consen 358 YSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR--TFTSPE 434 (893)
T ss_pred ECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee--eecCCC
Confidence 999 9999999999999999999999999999 5999999999999999999998 8889999998887543 222223
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEE
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVS 302 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~ 302 (792)
.....+|+..|.|. +++.+..+. -.+++|....|+.+ .+++||+++|..+.|
T Consensus 435 p~QfscvavD~sGe-lV~AG~~d~---------------------F~IfvWS~qTGqll------DiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 435 PIQFSCVAVDPSGE-LVCAGAQDS---------------------FEIFVWSVQTGQLL------DILSGHEGPVSGLSF 486 (893)
T ss_pred ceeeeEEEEcCCCC-EEEeeccce---------------------EEEEEEEeecCeee------ehhcCCCCcceeeEE
Confidence 44567888889898 444443221 13788888887663 456679999999999
Q ss_pred CCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 303 IDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 303 SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
+|+|..|+ ++|+|+||.-|++|.-.
T Consensus 487 ~~~~~~La--------------------------S~SWDkTVRiW~if~s~ 511 (893)
T KOG0291|consen 487 SPDGSLLA--------------------------SGSWDKTVRIWDIFSSS 511 (893)
T ss_pred ccccCeEE--------------------------eccccceEEEEEeeccC
Confidence 99999999 89999999999999773
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.84 E-value=1.7e-19 Score=205.76 Aligned_cols=212 Identities=25% Similarity=0.351 Sum_probs=170.7
Q ss_pred CCCCceEeeecccce-----eeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-----C
Q 036953 21 LRRRARNVSRLLAHR-----EISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----P 90 (792)
Q Consensus 21 ~~s~~r~V~~l~~~r-----els~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----~ 90 (792)
...+...+|.....+ ++..+...+..+.|+++++ .+++++.|++|++|+.+.. .
T Consensus 178 ~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~----------------~l~s~s~D~tiriwd~~~~~~~~~~ 241 (456)
T KOG0266|consen 178 SSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGS----------------YLLSGSDDKTLRIWDLKDDGRNLKT 241 (456)
T ss_pred cCCCcEEEeecccccchhhccccccccceeeeEECCCCc----------------EEEEecCCceEEEeeccCCCeEEEE
Confidence 356677778773333 3334556788888888876 4566678999999999432 5
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+.+|...|++++|+|+++.+++|+.|++|+|||+.+++++..+.+|...|++++|++ ++++|++++.|+.|++||+.++
T Consensus 242 l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~ 320 (456)
T KOG0266|consen 242 LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETG 320 (456)
T ss_pred ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCC
Confidence 789999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred c--EEEEec-cCC--CeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCC---CCeEEEEEccCCCeEEEE
Q 036953 171 E--CIGSCD-FYR--PIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTR---RSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 171 ~--~v~t~~-h~s--~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~---~sVtsVafSPdG~~LlaS 241 (792)
. ++..+. +.. .++.+.|+|++++|+++..+ .+++||+++..... ....|. ..+.+..+++.+..++++
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~sg 397 (456)
T KOG0266|consen 321 SKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVG---TYTGHSNLVRCIFSPTLSTGGKLIYSG 397 (456)
T ss_pred ceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCccee---eecccCCcceeEecccccCCCCeEEEE
Confidence 8 556653 332 58999999999999999966 59999999887654 233333 356667778889988877
Q ss_pred EeeCccccCCC
Q 036953 242 AEVNDLDSSDS 252 (792)
Q Consensus 242 ~s~~dLrs~d~ 252 (792)
..+..+..++.
T Consensus 398 ~~d~~v~~~~~ 408 (456)
T KOG0266|consen 398 SEDGSVYVWDS 408 (456)
T ss_pred eCCceEEEEeC
Confidence 77666555443
No 32
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.83 E-value=4.7e-19 Score=193.80 Aligned_cols=224 Identities=17% Similarity=0.235 Sum_probs=184.5
Q ss_pred CCCCceEeeecccceeeC--CCCceeeeEEeeCCCceEeecCCCcee-------------------------ecCCcEEE
Q 036953 21 LRRRARNVSRLLAHREIS--PKTKYVPKRQWVDASKLKTCGPSDSSV-------------------------RDAKRGLV 73 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rels--~~tk~V~s~aWspd~~lla~G~~a~sv-------------------------~d~~~~L~ 73 (792)
.-.+...+|+.......+ .+.+.+.++.|+..+.++.++..+... |.....++
T Consensus 254 ~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ 333 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFA 333 (524)
T ss_pred ecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEe
Confidence 356778888775543333 566789999999999887665543321 22233455
Q ss_pred EEeCCCeEEEEecc----CCCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC-
Q 036953 74 SWVEAESLRHLSAK----YCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL- 148 (792)
Q Consensus 74 S~s~d~sIrvWd~~----t~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~- 148 (792)
+.+.|+.|+++.+. ..++.+|...|.++.|+|.|..|++++.|++++||+.....+...|.+|...|..+.|+|+
T Consensus 334 ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g 413 (524)
T KOG0273|consen 334 TSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTG 413 (524)
T ss_pred ecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCC
Confidence 66777888888764 3468899999999999999999999999999999999988999999999999999999983
Q ss_pred -------CCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEE
Q 036953 149 -------RSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIV 219 (792)
Q Consensus 149 -------dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~ 219 (792)
.+..+++++.|++|++||+..+.++.+| +|..+|.+++|+|+|+++|+|+ ++.|+||+.++++.. ..
T Consensus 414 ~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~----~s 489 (524)
T KOG0273|consen 414 PVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV----KS 489 (524)
T ss_pred CccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchhee----Ee
Confidence 3467999999999999999999999999 8999999999999999999999 566999999998843 35
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 220 LKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 220 ~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
......|..|+|+-+|+.+.++.++..+.
T Consensus 490 ~~~~~~Ifel~Wn~~G~kl~~~~sd~~vc 518 (524)
T KOG0273|consen 490 YQGTGGIFELCWNAAGDKLGACASDGSVC 518 (524)
T ss_pred ecCCCeEEEEEEcCCCCEEEEEecCCCce
Confidence 56677899999999999888887766443
No 33
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=8.9e-19 Score=181.33 Aligned_cols=207 Identities=23% Similarity=0.408 Sum_probs=166.1
Q ss_pred CcCCCCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCC---cEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 036953 90 PLVPPPRSTIAAAFSPD-GRTLASTHGDHTVKIIDCQTG---NCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRL 164 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPD-G~~LaSGS~DGtVrIWDl~tg---k~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrL 164 (792)
.+.+|.+.+..++|+|- |..|++|+.|+.|+||+...+ .+...+. +|+..|+.++|+| .+++|++++.|.++.|
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp-~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSP-HGRYLASASFDATVVI 87 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecC-CCcEEEEeeccceEEE
Confidence 56789999999999996 889999999999999998843 3444443 7999999999999 9999999999999999
Q ss_pred EECCCC--cEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 165 WDANTS--ECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 165 WDl~tg--~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
|.-..+ +++.++ +|+..|.+++|+++|++||+++.++ |-||......+......+..|...|..|.|||... |++
T Consensus 88 w~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~ 166 (312)
T KOG0645|consen 88 WKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLF 166 (312)
T ss_pred eecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeE
Confidence 987754 577777 5999999999999999999999666 99999986665544456677999999999999998 455
Q ss_pred EEeeCccccCCCceeeecCCCcccCCCCceEEEEec-CCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCC
Q 036953 241 TAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQ-SGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASS 319 (792)
Q Consensus 241 S~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~s-sG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~S 319 (792)
+++++ ..++++... +++..... .+.+|..-||.++|.++|.-++
T Consensus 167 S~SYD----------------------nTIk~~~~~~dddW~c~~----tl~g~~~TVW~~~F~~~G~rl~--------- 211 (312)
T KOG0645|consen 167 SCSYD----------------------NTIKVYRDEDDDDWECVQ----TLDGHENTVWSLAFDNIGSRLV--------- 211 (312)
T ss_pred EeccC----------------------CeEEEEeecCCCCeeEEE----EecCccceEEEEEecCCCceEE---------
Confidence 55432 234444444 33332222 3667999999999999998888
Q ss_pred CCccccccccccccCCCCCcccccccccccc
Q 036953 320 SNMQIEPSASLHLQSDSNVEQDGTVPSMETF 350 (792)
Q Consensus 320 g~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~ 350 (792)
+.+-|.||.-|...
T Consensus 212 -----------------s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 212 -----------------SCSDDGTVSIWRLY 225 (312)
T ss_pred -----------------EecCCcceEeeeec
Confidence 68888888887744
No 34
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.2e-18 Score=196.74 Aligned_cols=255 Identities=15% Similarity=0.147 Sum_probs=199.8
Q ss_pred ceEeeecccceee---CCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCC-CCC
Q 036953 25 ARNVSRLLAHREI---SPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVP-PPR 96 (792)
Q Consensus 25 ~r~V~~l~~~rel---s~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~g-H~~ 96 (792)
...+|+....+.. ......++++.|+++|..++.| ..++.+.+||.... .+.+ |..
T Consensus 198 ~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG----------------~~~g~v~iwD~~~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 198 SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVG----------------TSDGTVQIWDVKEQKKTRTLRGSHAS 261 (484)
T ss_pred eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEe----------------ecCCeEEEEehhhccccccccCCcCc
Confidence 4455555443311 1224567777777777766555 56778888887644 3556 899
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE-ecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV-LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~-L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
.|-+++|+ +..+.+|+.|+.|..+|++..+.... +.+|...|.++.|++ |+.++++|+.|+.+.|||....+++..
T Consensus 262 rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~ 338 (484)
T KOG0305|consen 262 RVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFT 338 (484)
T ss_pred eeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEE
Confidence 99999998 78899999999999999998775554 889999999999999 999999999999999999987777766
Q ss_pred e-ccCCCeeEEEEcCCC-cEEEEEc---CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 176 C-DFYRPIASIAFHAEG-ELLAVAS---GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 176 ~-~h~s~V~sVafSpdG-~~LasgS---dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
+ .|...|..++|+|-. .+||+|+ |..|++||..++..+. .......|..|.|++..+.|+++.+.-
T Consensus 339 ~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~----~vdtgsQVcsL~Wsk~~kEi~sthG~s----- 409 (484)
T KOG0305|consen 339 FTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARID----SVDTGSQVCSLIWSKKYKELLSTHGYS----- 409 (484)
T ss_pred EeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEec----ccccCCceeeEEEcCCCCEEEEecCCC-----
Confidence 6 699999999999954 6888887 3449999999887543 445678899999999998888877532
Q ss_pred CCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccc
Q 036953 251 DSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASL 330 (792)
Q Consensus 251 d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~ 330 (792)
...+.+|...+=+ -...+.+|..+|..++.||||..++
T Consensus 410 ----------------~n~i~lw~~ps~~------~~~~l~gH~~RVl~la~SPdg~~i~-------------------- 447 (484)
T KOG0305|consen 410 ----------------ENQITLWKYPSMK------LVAELLGHTSRVLYLALSPDGETIV-------------------- 447 (484)
T ss_pred ----------------CCcEEEEeccccc------eeeeecCCcceeEEEEECCCCCEEE--------------------
Confidence 2245555555511 1223567999999999999999999
Q ss_pred cccCCCCCccccccccccccCCCCC
Q 036953 331 HLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 331 q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
+|.-|.|+..|..|+..|.
T Consensus 448 ------t~a~DETlrfw~~f~~~~~ 466 (484)
T KOG0305|consen 448 ------TGAADETLRFWNLFDERPK 466 (484)
T ss_pred ------EecccCcEEeccccCCCCc
Confidence 8999999999999997554
No 35
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.4e-19 Score=205.18 Aligned_cols=243 Identities=15% Similarity=0.216 Sum_probs=196.8
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
++.++..++|+|...++ ++.--.+.|++||.+.+ ++.+|.++|..++|+|+...|+||+.
T Consensus 8 kSsRvKglsFHP~rPwI----------------LtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGD 71 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWI----------------LTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGD 71 (1202)
T ss_pred ccccccceecCCCCCEE----------------EEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCC
Confidence 44567778888886654 44456788999999877 46799999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEE
Q 036953 116 DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELL 194 (792)
Q Consensus 116 DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~L 194 (792)
|-+|++|+..+.+|+.++.||-..|+.+.||+ .-.+++|+|.|.||++|+..+++++..+ +|...|.|..|||....+
T Consensus 72 DykIkVWnYk~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlI 150 (1202)
T KOG0292|consen 72 DYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLI 150 (1202)
T ss_pred ccEEEEEecccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceE
Confidence 99999999999999999999999999999999 8899999999999999999999999998 699999999999999999
Q ss_pred EEEc-CCeEEEEECCCCCccc--------------------------CCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 195 AVAS-GHKLYIWPYNNKEEAS--------------------------SPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 195 asgS-dd~V~IWDlrt~~~~~--------------------------~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
+++| |-+|++||+..-+... ......+|.+.|+-++|||.-. ++++++++
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DD-- 227 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADD-- 227 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCc--
Confidence 9999 7779999985432100 0123446888999999999888 44454433
Q ss_pred ccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccccc
Q 036953 248 DSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPS 327 (792)
Q Consensus 248 rs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s 327 (792)
..+++|..+..+- -+..+..||...|.++-|.|.-..|+
T Consensus 228 --------------------RqVKlWrmnetKa----WEvDtcrgH~nnVssvlfhp~q~lIl----------------- 266 (1202)
T KOG0292|consen 228 --------------------RQVKLWRMNETKA----WEVDTCRGHYNNVSSVLFHPHQDLIL----------------- 266 (1202)
T ss_pred --------------------ceeeEEEeccccc----eeehhhhcccCCcceEEecCccceeE-----------------
Confidence 1233444333211 13334667999999999999999999
Q ss_pred ccccccCCCCCccccccccccccCC
Q 036953 328 ASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 328 ~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+.+.|++|+-||.-.-
T Consensus 267 ---------SnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 267 ---------SNSEDKSIRVWDMTKR 282 (1202)
T ss_pred ---------ecCCCccEEEEecccc
Confidence 7889999999995544
No 36
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=3.6e-19 Score=205.66 Aligned_cols=159 Identities=21% Similarity=0.344 Sum_probs=136.2
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+.||.+.|..+.||. .++|++++.|++|+||++...+|++.|. |...|+||+|+|.|.+++++|+.|+.||||++...
T Consensus 365 f~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~ 442 (712)
T KOG0283|consen 365 FKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK 442 (712)
T ss_pred hhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcC
Confidence 579999999999995 5689999999999999999999999997 99999999999999999999999999999999998
Q ss_pred cEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEe------cCCCCeEEEEEccCCC-eEEEEE
Q 036953 171 ECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVL------KTRRSLRAVHFHPHAA-PFVLTA 242 (792)
Q Consensus 171 ~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~------~h~~sVtsVafSPdG~-~LlaS~ 242 (792)
+.+.-.+...-|++++|.|||++.++|+ +|.+++|+....+......+.. .+. .|+.+.|.|... .+++++
T Consensus 443 ~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTS 521 (712)
T KOG0283|consen 443 KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTS 521 (712)
T ss_pred eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEec
Confidence 8887777789999999999999999999 6669999998776433111111 133 799999998654 488888
Q ss_pred eeCccccCCC
Q 036953 243 EVNDLDSSDS 252 (792)
Q Consensus 243 s~~dLrs~d~ 252 (792)
.|..||..+.
T Consensus 522 nDSrIRI~d~ 531 (712)
T KOG0283|consen 522 NDSRIRIYDG 531 (712)
T ss_pred CCCceEEEec
Confidence 8888887665
No 37
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4.7e-19 Score=198.45 Aligned_cols=215 Identities=16% Similarity=0.251 Sum_probs=175.9
Q ss_pred CCCCCCceEeeecccceeeCC---CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----Cc
Q 036953 19 NHLRRRARNVSRLLAHREISP---KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PL 91 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels~---~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L 91 (792)
.+.-.+...||+-.++..+.. ....+....|. ..+..++++++|..||+++..+. ++
T Consensus 30 a~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfi----------------aRknWiv~GsDD~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 30 AALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFI----------------ARKNWIVTGSDDMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred EeeecCeeEEEecccceeeeeeeecccchhhheee----------------eccceEEEecCCceEEEEecccceeeEEe
Confidence 344566778887776654431 11122222222 23456777789999999998765 57
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG-NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg-k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
..|.+-|.+++.+|...+++++|.|-+|++||.+.+ .+.++|.||...|.+++|+|.|.+.++|++.|++||+|.+...
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence 899999999999999999999999999999998754 6889999999999999999999999999999999999999998
Q ss_pred cEEEEe-ccCCCeeEEEEcCCC--cEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc
Q 036953 171 ECIGSC-DFYRPIASIAFHAEG--ELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 171 ~~v~t~-~h~s~V~sVafSpdG--~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
.+..++ +|...|++++|-+.| .+|++|+||. |+|||.++..++. .+.+|...|..+.|||.-..+++++.+..
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~---TLeGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ---TLEGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH---HhhcccccceEEEecCCCcEEEEecCCcc
Confidence 888888 599999999998755 6999999776 9999999998765 56779999999999999987777776877
Q ss_pred cccCCC
Q 036953 247 LDSSDS 252 (792)
Q Consensus 247 Lrs~d~ 252 (792)
++.|..
T Consensus 251 vriWhs 256 (794)
T KOG0276|consen 251 VRIWNS 256 (794)
T ss_pred EEEecC
Confidence 776653
No 38
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.1e-18 Score=178.30 Aligned_cols=244 Identities=20% Similarity=0.343 Sum_probs=187.7
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
.+.+++++.++++|.. ++++++|.++++||...++ +..++-+|..++|....+.++.++.
T Consensus 13 ~~~~i~sl~fs~~G~~----------------litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt 76 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLL----------------LITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST 76 (311)
T ss_pred CCCceeEEEecCCCCE----------------EEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC
Confidence 4567788888777664 3444566677777766542 3345567889999887777777776
Q ss_pred --CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcE
Q 036953 116 --DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGEL 193 (792)
Q Consensus 116 --DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~ 193 (792)
|.+|+.-++.+++.++.|.||...|..++.+| .++.+++++.|++|++||++..++...+...+. ..++|+|+|-+
T Consensus 77 k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLi 154 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLI 154 (311)
T ss_pred CCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcE
Confidence 88999999999999999999999999999999 779999999999999999998888777653332 34789999999
Q ss_pred EEEEcCC-eEEEEECCCCCcccCCeEEe--cCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCce
Q 036953 194 LAVASGH-KLYIWPYNNKEEASSPIIVL--KTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAV 270 (792)
Q Consensus 194 LasgSdd-~V~IWDlrt~~~~~~~~~~~--~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~ 270 (792)
+|++.+. .|++||+|.-.......... ......+.+.|+|||++++++.... .+
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s-----------------------~~ 211 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS-----------------------FI 211 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC-----------------------cE
Confidence 9999965 69999999876543222222 2356789999999999999887432 45
Q ss_pred EEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCcccccccccccc
Q 036953 271 FVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETF 350 (792)
Q Consensus 271 ~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~ 350 (792)
.+.++-+|.....+.+.+.-...+ .++.|+|||++++ +|++|.+|..|...
T Consensus 212 ~~lDAf~G~~~~tfs~~~~~~~~~---~~a~ftPds~Fvl--------------------------~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 212 YLLDAFDGTVKSTFSGYPNAGNLP---LSATFTPDSKFVL--------------------------SGSDDGTIHVWNLE 262 (311)
T ss_pred EEEEccCCcEeeeEeeccCCCCcc---eeEEECCCCcEEE--------------------------EecCCCcEEEEEcC
Confidence 666777777666665433222122 6799999999999 89999999999986
Q ss_pred CCC
Q 036953 351 PVI 353 (792)
Q Consensus 351 ~~~ 353 (792)
.|.
T Consensus 263 tg~ 265 (311)
T KOG1446|consen 263 TGK 265 (311)
T ss_pred CCc
Confidence 663
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.8e-18 Score=199.32 Aligned_cols=224 Identities=20% Similarity=0.283 Sum_probs=185.9
Q ss_pred CCCCCCC---CCCCCCceEeeecccc---eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEe
Q 036953 12 SLRSQPS---NHLRRRARNVSRLLAH---REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLS 85 (792)
Q Consensus 12 ~~~~~~~---~s~~s~~r~V~~l~~~---rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd 85 (792)
.+++..| .+..++-++.|+-.-. .++..+...|..+.|+|...++ +++++|..|++|+
T Consensus 16 sFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplF----------------VSGGDDykIkVWn 79 (1202)
T KOG0292|consen 16 SFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLF----------------VSGGDDYKIKVWN 79 (1202)
T ss_pred ecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeE----------------EecCCccEEEEEe
Confidence 3555555 7778899999964322 2334567789999999997755 4457899999999
Q ss_pred ccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCe
Q 036953 86 AKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161 (792)
Q Consensus 86 ~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt 161 (792)
.+.. +|.||-+.|..+.|++.-.+|+|+|.|.+|+||+..+++++..+.||...|.|..|+| ..++++|+|.|.+
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp-tEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP-TEDLIVSASLDQT 158 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCC-ccceEEEecccce
Confidence 8865 5789999999999999999999999999999999999999999999999999999999 8899999999999
Q ss_pred EEEEECCCC---------------------------cEEEE--e-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCC
Q 036953 162 VRLWDANTS---------------------------ECIGS--C-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNK 210 (792)
Q Consensus 162 VrLWDl~tg---------------------------~~v~t--~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~ 210 (792)
||+||+..- ..+.. + +|...|+-++|||.-.+|++|+||+ |++|.++..
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 999998521 11111 1 4788999999999999999999888 999999877
Q ss_pred CcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 211 EEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 211 ~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
+... .-...+|...|.++-|||..+.+++.+.+..++.||..
T Consensus 239 KaWE-vDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 239 KAWE-VDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred ccee-ehhhhcccCCcceEEecCccceeEecCCCccEEEEecc
Confidence 6543 34567799999999999999988888888888877754
No 40
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.81 E-value=4.1e-18 Score=174.75 Aligned_cols=211 Identities=19% Similarity=0.255 Sum_probs=169.5
Q ss_pred CCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcC
Q 036953 22 RRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLV 92 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~ 92 (792)
-.-.++.|.+.+.+... .....|+.+...|+++.++.+ ....||+||+.++ .+.
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa-----------------~~qhvRlyD~~S~np~Pv~t~e 80 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAA-----------------GNQHVRLYDLNSNNPNPVATFE 80 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhc-----------------cCCeeEEEEccCCCCCceeEEe
Confidence 44457788887765544 455578888888887766554 2345788887654 467
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
+|.+.|.++.|..||+.+++|+.||++||||++...+-+.|+ |..+|+++..+| +...|++|..+|.|++||+.+..+
T Consensus 81 ~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c 158 (311)
T KOG0315|consen 81 GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSC 158 (311)
T ss_pred ccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCcc
Confidence 899999999999999999999999999999999877666665 889999999999 889999999999999999999877
Q ss_pred EEEe--ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccC--C-eEEecCCCCeEEEEEccCCCeEEEEEeeCc
Q 036953 173 IGSC--DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASS--P-IIVLKTRRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 173 v~t~--~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~--~-~~~~~h~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
...+ +..-.|.++...|||++|+.+.+ +..++|++-....... | ..+..|.+.+..+.++||+++|++++++..
T Consensus 159 ~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt 238 (311)
T KOG0315|consen 159 THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT 238 (311)
T ss_pred ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce
Confidence 7766 45678999999999999999885 4599999976543321 2 234558999999999999999998888766
Q ss_pred cccCC
Q 036953 247 LDSSD 251 (792)
Q Consensus 247 Lrs~d 251 (792)
++.|.
T Consensus 239 v~iwn 243 (311)
T KOG0315|consen 239 VKIWN 243 (311)
T ss_pred EEEEe
Confidence 65443
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.81 E-value=4.7e-19 Score=188.57 Aligned_cols=217 Identities=18% Similarity=0.204 Sum_probs=171.4
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
-+.+|.+.|.|+++.|...+|++|+.|++|+|||+.+|+...++.||...|..+++++ ...++++++.|+.|++||+..
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~-rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSK-RHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecc-cCceEEEecCCCeeEEEechh
Confidence 3679999999999999999999999999999999999999999999999999999999 888999999999999999999
Q ss_pred CcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 170 SECIGSC-DFYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 170 g~~v~t~-~h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
.+.++.+ +|-+.|.+++.+|.-..|++++.| .++|||+++...+ ..+.+|..+|.+|.+.|....+++++-+..+
T Consensus 225 nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V---~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 225 NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV---HVLSGHTNPVASVMCQPTDPQVITGSHDSTV 301 (460)
T ss_pred hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceE---EEecCCCCcceeEEeecCCCceEEecCCceE
Confidence 9988887 689999999999999999999955 4999999998754 3667799999999999988778776665555
Q ss_pred ccCC-----CceeeecCCC---cccCCCCceEEEEecCCCEEEEee----ccCcccCCCceEEEeEECCCCcEEE
Q 036953 248 DSSD-----SSMTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA----ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 248 rs~d-----~~~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s----~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+.|| ....+....- .....+....|+.+..++...+.- -+..+++|..-|..+....||-++.
T Consensus 302 rlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~ 376 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVS 376 (460)
T ss_pred EEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeeeeeeccCceEEE
Confidence 5444 3333322111 111222223333333333322222 1234678999999999999999887
No 42
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.81 E-value=5.3e-19 Score=201.36 Aligned_cols=227 Identities=15% Similarity=0.147 Sum_probs=192.3
Q ss_pred cCCcEEEEEeCCCeEEEEeccCC--------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcE-----EE-
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYC--------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNC-----LK- 131 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~--------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~-----v~- 131 (792)
..+..+++++.|+++++|....+ +..+|...|.+++++. ...+|+++|.|.++++|++...+. +.
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceeh
Confidence 44568899999999999977322 4579999999999987 446899999999999999975321 11
Q ss_pred ---EecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEE
Q 036953 132 ---VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWP 206 (792)
Q Consensus 132 ---~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWD 206 (792)
.-..|...|++++++| +.++++|||.|++.++|+++..+...++ +|...+.++.|++..+.++++|.|+ |+||.
T Consensus 455 ~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 2237999999999999 9999999999999999999998888888 6999999999999999999999555 99999
Q ss_pred CCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeec
Q 036953 207 YNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAE 286 (792)
Q Consensus 207 lrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~ 286 (792)
+.+..+.+ .+.+|...|..+.|-.+|+.|++++++. .+++|...+..|...
T Consensus 534 is~fSClk---T~eGH~~aVlra~F~~~~~qliS~~adG-----------------------liKlWnikt~eC~~t--- 584 (775)
T KOG0319|consen 534 ISTFSCLK---TFEGHTSAVLRASFIRNGKQLISAGADG-----------------------LIKLWNIKTNECEMT--- 584 (775)
T ss_pred eccceeee---eecCccceeEeeeeeeCCcEEEeccCCC-----------------------cEEEEeccchhhhhh---
Confidence 99998765 6777999999999999999998888654 577788777777433
Q ss_pred cCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 287 LPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 287 l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+..|..+||....++.+.+++ +|..|..|-.|+....
T Consensus 585 ---lD~H~DrvWaL~~~~~~~~~~--------------------------tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 585 ---LDAHNDRVWALSVSPLLDMFV--------------------------TGGGDGRIIFWKDVTE 621 (775)
T ss_pred ---hhhccceeEEEeecCccceeE--------------------------ecCCCeEEEEeecCcH
Confidence 344999999999999999999 7888888888887666
No 43
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.81 E-value=3.4e-18 Score=183.35 Aligned_cols=245 Identities=16% Similarity=0.190 Sum_probs=187.4
Q ss_pred CCceEeeecccceeeC--CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC--------cC
Q 036953 23 RRARNVSRLLAHREIS--PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP--------LV 92 (792)
Q Consensus 23 s~~r~V~~l~~~rels--~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~--------L~ 92 (792)
.+..++|+...+.... .++..+.+++|.... .....+++++.|+++++|..+.+. ..
T Consensus 124 Dg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n-------------~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~ 190 (423)
T KOG0313|consen 124 DGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKN-------------SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCR 190 (423)
T ss_pred CCeeEEEecCCceEEEEecCCcceeeeEEEecC-------------CccceEEEecCCceEEEEEecCchhhhhHHhHhc
Confidence 3456666654443222 444455555553332 123468899999999999887542 34
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-------------------------CCcEEEEecCCCCCcEEEEEcc
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ-------------------------TGNCLKVLSGHRRTPWVVRFHP 147 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~-------------------------tgk~v~~L~gH~~~VtsVafSP 147 (792)
||.+.|.++...++|..+++|+.|.+|+||+.. ++.++..+.||..+|.++.|.+
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 999999999999999999999999999999932 1234567889999999999986
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCe
Q 036953 148 LRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 148 ~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
...+++++.|.+|+.||+.+++.+.++..+..++++++++..++|++|+.+. |++||-+++........+.+|...|
T Consensus 271 --~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwV 348 (423)
T KOG0313|consen 271 --ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWV 348 (423)
T ss_pred --CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhh
Confidence 7899999999999999999999999998899999999999999999999666 9999999886544445677899999
Q ss_pred EEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC
Q 036953 227 RAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS 306 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG 306 (792)
.+|.|+|...+++++++.+ ...++|+..+. ...+..+.+|...|.+++++. |
T Consensus 349 ssvkwsp~~~~~~~S~S~D----------------------~t~klWDvRS~-----k~plydI~~h~DKvl~vdW~~-~ 400 (423)
T KOG0313|consen 349 SSVKWSPTNEFQLVSGSYD----------------------NTVKLWDVRST-----KAPLYDIAGHNDKVLSVDWNE-G 400 (423)
T ss_pred hheecCCCCceEEEEEecC----------------------CeEEEEEeccC-----CCcceeeccCCceEEEEeccC-C
Confidence 9999999999999888733 23344443221 223344555788888888875 4
Q ss_pred cEEE
Q 036953 307 RIDL 310 (792)
Q Consensus 307 r~lv 310 (792)
.+|+
T Consensus 401 ~~Iv 404 (423)
T KOG0313|consen 401 GLIV 404 (423)
T ss_pred ceEE
Confidence 4555
No 44
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.81 E-value=9.7e-18 Score=168.21 Aligned_cols=217 Identities=24% Similarity=0.353 Sum_probs=162.9
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
++.+|...|.+++|+|++++|++++.|+.|++||+.+++....+..|...+..+.|++ +++++++++.|+.|++||+.+
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECC-CCCEEEEEcCCCeEEEEEcCc
Confidence 4668999999999999999999999999999999999888888899999999999999 778999999999999999998
Q ss_pred CcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 170 SECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 170 g~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
++.+..+. +...+.++.|+++++++++++ ++.|++||+++.+... ....|...+++++|+|++..++++..+..+
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT---TLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE---EeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 77777764 667899999999999999998 7779999998665432 334578889999999998866555434444
Q ss_pred ccCC-----CceeeecCCC---cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEE
Q 036953 248 DSSD-----SSMTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 248 rs~d-----~~~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
..++ ....+..... ...+.+....++....+..+.+.. ....+..|...+..+.++|++.+++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 235 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLA 235 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEE
Confidence 4333 2222222221 233433432333333333333333 1223446788999999999988888
No 45
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.81 E-value=1.3e-19 Score=185.51 Aligned_cols=225 Identities=20% Similarity=0.237 Sum_probs=187.4
Q ss_pred EEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-EEEEecCCCCCcEEEEEccC
Q 036953 73 VSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN-CLKVLSGHRRTPWVVRFHPL 148 (792)
Q Consensus 73 ~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk-~v~~L~gH~~~VtsVafSP~ 148 (792)
.++..|-+.++||..++. -..|..-|.+++|+.|.++|++|+.++.++|||++..+ +...+.+|.+.|..+-|..
T Consensus 75 asaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~- 153 (334)
T KOG0278|consen 75 ASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH- 153 (334)
T ss_pred hhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-
Confidence 344566777889887773 24688889999999999999999999999999998654 5677889999999999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEE
Q 036953 149 RSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRA 228 (792)
Q Consensus 149 dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVts 228 (792)
..+.+++.+.|++||+||.++++.++++..+++|+++..+++|++|.++....|..||.++.+..+ ...-...|.+
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lK----s~k~P~nV~S 229 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLK----SYKMPCNVES 229 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEecccccccee----eccCcccccc
Confidence 778888889999999999999999999999999999999999999999988889999999887543 3445667999
Q ss_pred EEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcE
Q 036953 229 VHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRI 308 (792)
Q Consensus 229 VafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~ 308 (792)
..++|+...+++.+.+.. .+-.+..+|..+... .++|.+.|.++.|+|||..
T Consensus 230 ASL~P~k~~fVaGged~~-----------------------~~kfDy~TgeEi~~~-----nkgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFK-----------------------VYKFDYNTGEEIGSY-----NKGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred ccccCCCceEEecCcceE-----------------------EEEEeccCCceeeec-----ccCCCCceEEEEECCCCce
Confidence 999999976665554321 223344555554442 4679999999999999999
Q ss_pred EEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCCC
Q 036953 309 DLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPPG 356 (792)
Q Consensus 309 lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~~ 356 (792)
.+ +||.|.||.-|-+-|+.+..
T Consensus 282 yA--------------------------sGSEDGTirlWQt~~~~~~~ 303 (334)
T KOG0278|consen 282 YA--------------------------SGSEDGTIRLWQTTPGKTYG 303 (334)
T ss_pred ee--------------------------ccCCCceEEEEEecCCCchh
Confidence 99 89999999999999997664
No 46
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.80 E-value=3.9e-18 Score=194.34 Aligned_cols=245 Identities=13% Similarity=0.208 Sum_probs=194.8
Q ss_pred CCCeEEEEeccCCCc--CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEE
Q 036953 77 EAESLRHLSAKYCPL--VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILA 154 (792)
Q Consensus 77 ~d~sIrvWd~~t~~L--~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLa 154 (792)
..+++++|+.++.+. .-....+.+..|-|.++++++|...|.+.+||+.+...+..+++|.+.|+.++.+| |+..++
T Consensus 392 a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~v 470 (888)
T KOG0306|consen 392 AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFV 470 (888)
T ss_pred CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceE
Confidence 456788888775421 11233688999999999999999999999999999999999999999999999999 999999
Q ss_pred EEeCCCeEEEEECCC-----Cc--------EEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEe
Q 036953 155 SGSLDHEVRLWDANT-----SE--------CIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 155 SgS~DgtVrLWDl~t-----g~--------~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
++|.|++|++||..- +. ...++.....|.++.+||||++|+++- +++++||-+++.+- .....
T Consensus 471 T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF---flsLY 547 (888)
T KOG0306|consen 471 TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF---FLSLY 547 (888)
T ss_pred EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee---eeeec
Confidence 999999999999742 11 113445678899999999999999998 88899999988873 35778
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe-----eCccccCCCceeeecCC---CcccCCCCceEEEEecCCCEEEEee-----cc
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSSDSSMTRATSP---GYLRYPPPAVFVANAQSGDHVSLAA-----EL 287 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~d~~~~l~t~s---g~~~~p~~~~~l~~~ssG~~~~l~s-----~l 287 (792)
+|.-+|.+++.+||++.+++++. .|.++.+|....+.... .+..|.|..++|+....+..++-+. ..
T Consensus 548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~i 627 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEI 627 (888)
T ss_pred ccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhh
Confidence 99999999999999996666555 55566666665554433 3566766766666655555555543 34
Q ss_pred CcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccC
Q 036953 288 PLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFP 351 (792)
Q Consensus 288 ~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~ 351 (792)
..+.+|...||+.+.+|+|.+++ ++|.|++|.-|+---
T Consensus 628 q~L~~H~~ev~cLav~~~G~~vv--------------------------s~shD~sIRlwE~td 665 (888)
T KOG0306|consen 628 QKLDGHHSEVWCLAVSPNGSFVV--------------------------SSSHDKSIRLWERTD 665 (888)
T ss_pred eeeccchheeeeeEEcCCCCeEE--------------------------eccCCceeEeeeccC
Confidence 56788999999999999999999 899999999998544
No 47
>PTZ00421 coronin; Provisional
Probab=99.80 E-value=7.2e-18 Score=193.87 Aligned_cols=178 Identities=13% Similarity=0.216 Sum_probs=141.4
Q ss_pred EEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEecCCCC
Q 036953 71 GLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAFSPDG-RTLASTHGDHTVKIIDCQTGNCLKVLSGHRR 138 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLafSPDG-~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~ 138 (792)
.|++++.|++|++|+.... .+.+|...|.+++|+|++ +.|++++.|++|+|||+.+++.+..+.+|..
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~ 169 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD 169 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC
Confidence 5677788899999987543 357899999999999975 7999999999999999999999999999999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCC-CeeEEEEcCCCcEEEEEc-----CCeEEEEECCCCC
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYR-PIASIAFHAEGELLAVAS-----GHKLYIWPYNNKE 211 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s-~V~sVafSpdG~~LasgS-----dd~V~IWDlrt~~ 211 (792)
.|.+++|+| ++.+|++++.|++|++||+++++.+..+. |.+ .+..+.|.+++..|++++ ++.|++||+++..
T Consensus 170 ~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 170 QITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred ceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 999999999 99999999999999999999999888774 544 345788999887777654 3459999998765
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEEe-eCccccC
Q 036953 212 EASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDLDSS 250 (792)
Q Consensus 212 ~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dLrs~ 250 (792)
... ..........+....|+++++.+++++. +..|+.+
T Consensus 249 ~p~-~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriw 287 (493)
T PTZ00421 249 SPY-STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCF 287 (493)
T ss_pred Cce-eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEE
Confidence 322 1111223445667789999998877764 4444443
No 48
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=6.9e-19 Score=187.79 Aligned_cols=239 Identities=16% Similarity=0.247 Sum_probs=192.9
Q ss_pred EEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-CcEEEEecCCCCCcEEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT-GNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t-gk~v~~L~gH~~~VtsVaf 145 (792)
.++++++|.+|++||..+++ |.+|.+.|.+++|+..|++|++++.|-.+++||..+ .++++.+.+|...|.+++|
T Consensus 122 ~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f 201 (406)
T KOG0295|consen 122 LVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFF 201 (406)
T ss_pred EEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEE
Confidence 35566789999999999884 679999999999999999999999999999999976 5678888899999999999
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCC
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTR 223 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~ 223 (792)
-| .++++++|+.|.+|+.|++.++.++.++ .|...+..+..+.||.++++++.+ +|++|-+.+.+... ....|.
T Consensus 202 ~P-~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~---~lR~hE 277 (406)
T KOG0295|consen 202 LP-LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKA---ELREHE 277 (406)
T ss_pred Ee-cCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhh---hhhccc
Confidence 99 8899999999999999999999999999 488899999999999999999954 59999999886543 456788
Q ss_pred CCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEEC
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSI 303 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~S 303 (792)
-+|-+++|.|...+--.+..... ......... .--...+++|+.+.|.|+.. +.+|..+|.+++|+
T Consensus 278 h~vEci~wap~~~~~~i~~at~~--~~~~~~l~s------~SrDktIk~wdv~tg~cL~t------L~ghdnwVr~~af~ 343 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGS--TNGGQVLGS------GSRDKTIKIWDVSTGMCLFT------LVGHDNWVRGVAFS 343 (406)
T ss_pred cceEEEEecccccCcchhhccCC--CCCccEEEe------ecccceEEEEeccCCeEEEE------EecccceeeeeEEc
Confidence 89999999997642111000000 000001111 11234688888888877444 44599999999999
Q ss_pred CCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 304 DDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 304 pDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
|-|+||+ +-.-|+|+.-||.....
T Consensus 344 p~Gkyi~--------------------------ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 344 PGGKYIL--------------------------SCADDKTLRVWDLKNLQ 367 (406)
T ss_pred CCCeEEE--------------------------EEecCCcEEEEEeccce
Confidence 9999999 78889999999987763
No 49
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.80 E-value=2.3e-18 Score=180.30 Aligned_cols=206 Identities=21% Similarity=0.233 Sum_probs=170.4
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ-TGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~-tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
.+.+|++.|+.+.|+|+|..|++|+.|..|.+|+.. ..+...++++|.++|+.+.|.+ |+..+++|+.|++|+.||++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-DGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-CCCEEEEecCCceEEEEecc
Confidence 578999999999999999999999999999999954 4456788899999999999999 99999999999999999999
Q ss_pred CCcEEEEec-cCCCeeEEEEcCCCcEEE-EEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 169 TSECIGSCD-FYRPIASIAFHAEGELLA-VASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 169 tg~~v~t~~-h~s~V~sVafSpdG~~La-sgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+|++++.+. |.+-++++.-+.-|..|+ ++++++ +++||+++.+..+ .......++++.|..++..+++++=++
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~----t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK----TFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh----ccccceeEEEEEecccccceeeccccC
Confidence 999999985 888888888666665554 555554 9999999887544 444567799999999998777666555
Q ss_pred ccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccc
Q 036953 246 DLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIE 325 (792)
Q Consensus 246 dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~ 325 (792)
+++.| +...++..++ ++||...|..+..+++|.+++
T Consensus 197 ~ikvW-----------------------d~r~~d~~~~------lsGh~DtIt~lsls~~gs~ll--------------- 232 (338)
T KOG0265|consen 197 DIKVW-----------------------DLRKNDGLYT------LSGHADTITGLSLSRYGSFLL--------------- 232 (338)
T ss_pred ceeee-----------------------ccccCcceEE------eecccCceeeEEeccCCCccc---------------
Confidence 55444 4333344333 445999999999999999999
Q ss_pred ccccccccCCCCCccccccccccccCCCCC
Q 036953 326 PSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 326 ~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
+.+-|.|++.||+-|-.|.
T Consensus 233 -----------snsMd~tvrvwd~rp~~p~ 251 (338)
T KOG0265|consen 233 -----------SNSMDNTVRVWDVRPFAPS 251 (338)
T ss_pred -----------cccccceEEEEEecccCCC
Confidence 7889999999999988766
No 50
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.80 E-value=1.6e-19 Score=191.33 Aligned_cols=224 Identities=17% Similarity=0.253 Sum_probs=182.9
Q ss_pred ceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCC
Q 036953 63 SSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR 138 (792)
Q Consensus 63 ~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~ 138 (792)
..+.-.+.+++++..|++|++||.+.- .|.||.+.|.|+.|. .+.|++|+.|.+|+|||.++++++.++-.|..
T Consensus 201 YClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHce 278 (499)
T KOG0281|consen 201 YCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE 278 (499)
T ss_pred EEEEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcc
Confidence 445557788999999999999998753 678999999999995 67999999999999999999999999999999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE---Ee-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcc
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG---SC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEA 213 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~---t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~ 213 (792)
.|..+.|+. .+++||+.|.++.+||+.....+. .+ +|...|+.+.|+ .++++++++++ |++|++.+.+.+
T Consensus 279 aVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv 353 (499)
T KOG0281|consen 279 AVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV 353 (499)
T ss_pred eeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeee
Confidence 999999975 799999999999999998754322 12 688999999985 55999998555 999999999865
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCC
Q 036953 214 SSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSL 293 (792)
Q Consensus 214 ~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh 293 (792)
. ...+|...|-++.+. ++.+++++++. .+.+|..+.|.| +.++.||
T Consensus 354 R---tl~gHkRGIAClQYr--~rlvVSGSSDn-----------------------tIRlwdi~~G~c------LRvLeGH 399 (499)
T KOG0281|consen 354 R---TLNGHKRGIACLQYR--DRLVVSGSSDN-----------------------TIRLWDIECGAC------LRVLEGH 399 (499)
T ss_pred h---hhhcccccceehhcc--CeEEEecCCCc-----------------------eEEEEeccccHH------HHHHhch
Confidence 4 566788888888774 66444444343 466778788777 4456679
Q ss_pred CceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 294 PFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 294 ~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
+..|-++.|. .+-|| +|.||.+|.-||...++.+
T Consensus 400 EeLvRciRFd--~krIV--------------------------SGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 400 EELVRCIRFD--NKRIV--------------------------SGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred HHhhhheeec--Cceee--------------------------eccccceEEEEecccccCC
Confidence 9999999885 46677 8999999999998888533
No 51
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=1.3e-18 Score=198.11 Aligned_cols=179 Identities=22% Similarity=0.308 Sum_probs=159.4
Q ss_pred CCcEEEEEeCCCeEEEEeccCC-------------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC-------------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS 134 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~-------------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~ 134 (792)
+-..+++++.|.++++|+.... ....|.+.|+|++++|+.+.|++||.|++.+||++.......+|.
T Consensus 423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs 502 (775)
T KOG0319|consen 423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS 502 (775)
T ss_pred CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee
Confidence 3446788999999999998651 124799999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCc
Q 036953 135 GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEE 212 (792)
Q Consensus 135 gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~ 212 (792)
||+..|+++.|+| .+++++|+|.|++||||.+.+..|+++|. |...|..+.|-.+|+.|++++.++ |++|++++.++
T Consensus 503 GH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 503 GHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred CCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh
Confidence 9999999999999 88999999999999999999999999995 999999999999999999988555 99999999997
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 213 ASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 213 ~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
.. ....|.+.|.++..+|.+..+++++++..+..|
T Consensus 582 ~~---tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 582 EM---TLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFW 616 (775)
T ss_pred hh---hhhhccceeEEEeecCccceeEecCCCeEEEEe
Confidence 65 677899999999999999977666666555443
No 52
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=3.7e-18 Score=175.50 Aligned_cols=175 Identities=19% Similarity=0.293 Sum_probs=149.9
Q ss_pred CCcEEEEEeCCCeEEEEeccCC-----CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC-----PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~-----~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vt 141 (792)
....++++..|+++++||.... .++.|...|.++.|++ +...+++++-|++||||+.+.++.+.+|.+|...|.
T Consensus 72 ~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 72 HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 4456788888999999996432 4678999999999999 777888999999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEeccCCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCcccCCeE
Q 036953 142 VVRFHPLRSEILASGSLDHEVRLWDANT-SECIGSCDFYRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASSPII 218 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~v~t~~h~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~~~~ 218 (792)
...|+|..++++++++.|+++++||++. ++.+....|...|.++.|+.-. ..|++++ |+.|++||+++-+.. ...
T Consensus 152 ~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p--l~e 229 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP--LFE 229 (311)
T ss_pred EEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc--cee
Confidence 9999999999999999999999999986 5565544588899999999755 6777777 445999999988743 245
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEee
Q 036953 219 VLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 219 ~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
+.+|.-.|+.|+|+|....++++++.
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASY 255 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccc
Confidence 57789999999999999989888873
No 53
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.79 E-value=3.7e-18 Score=201.42 Aligned_cols=267 Identities=19% Similarity=0.200 Sum_probs=187.7
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC-CCeEEEEec----cCCCcCCCCCCeEEEEEcCCCCEEEEEE
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE-AESLRHLSA----KYCPLVPPPRSTIAAAFSPDGRTLASTH 114 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~-d~sIrvWd~----~t~~L~gH~~~V~sLafSPDG~~LaSGS 114 (792)
+++.+.++.-+|++..+++|+ .+.|++..+|+... ......++. ..+++..|...|+|+.|++||++||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgG---q~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGG---QVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCC---ccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 445678889999999888884 22234444554321 112223333 2346778999999999999999999999
Q ss_pred CCCeEEEEECCC------------------CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 115 GDHTVKIIDCQT------------------GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 115 ~DGtVrIWDl~t------------------gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
.|+.|.||.... .+++..+.+|...|..++|+| ++.+|++++.|++|.+||.++.+.+..+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl 167 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVL 167 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeee
Confidence 999999998762 135678899999999999999 9999999999999999999999888888
Q ss_pred -ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCccc---CCeEEecCCCCeEEEEEccCCCeEEEEEeeCc-----
Q 036953 177 -DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEAS---SPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND----- 246 (792)
Q Consensus 177 -~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~---~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d----- 246 (792)
+|.+.|..+.|+|-|+|||+-+||+ |+||++......+ .+.........++.+.|+|||++|++..+.+.
T Consensus 168 ~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~ 247 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI 247 (942)
T ss_pred ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence 5999999999999999999999776 9999977654332 11111223456889999999998887554221
Q ss_pred ----cccCCCceeeecCCC-----------cccC--------C-CCceEEEEecCCCEEEEee---ccCcc---cCCCce
Q 036953 247 ----LDSSDSSMTRATSPG-----------YLRY--------P-PPAVFVANAQSGDHVSLAA---ELPLM---SSLPFL 296 (792)
Q Consensus 247 ----Lrs~d~~~~l~t~sg-----------~~~~--------p-~~~~~l~~~ssG~~~~l~s---~l~~l---~gh~~~ 296 (792)
-..|+....+-+... |... + .....+++++.+..+.++. .-+++ .-....
T Consensus 248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~S 327 (942)
T KOG0973|consen 248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKS 327 (942)
T ss_pred EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCc
Confidence 112222222211111 0000 0 0113566666666655555 11222 224578
Q ss_pred EEEeEECCCCcEEE
Q 036953 297 IVPSVSIDDSRIDL 310 (792)
Q Consensus 297 VwdV~~SpDGr~lv 310 (792)
|+|+.++|||..|+
T Consensus 328 I~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 328 IVDMSWSPDGFSLF 341 (942)
T ss_pred eeeeeEcCCCCeEE
Confidence 99999999999888
No 54
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=5.9e-18 Score=182.13 Aligned_cols=221 Identities=16% Similarity=0.196 Sum_probs=169.1
Q ss_pred CCCCCCCceEeeecccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCCCCC
Q 036953 18 SNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRS 97 (792)
Q Consensus 18 ~~s~~s~~r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~~ 97 (792)
.-.|.+++|+||....+++.|....+++...|+....-+..-..+..+...+++-+....-..+-..+..+-.+.+|...
T Consensus 4 ~~vR~SKfRHVFgq~~K~e~CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~ 83 (472)
T KOG0303|consen 4 HVVRSSKFRHVFGQPVKNDQCYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAP 83 (472)
T ss_pred hhhhhhhhHHHhccccchhhhhcceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCcccc
Confidence 45678999999999999999999999999999887432211111111211222222222222222233344467899999
Q ss_pred eEEEEEcC-CCCEEEEEECCCeEEEEECCCC-------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 98 TIAAAFSP-DGRTLASTHGDHTVKIIDCQTG-------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 98 V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg-------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
|..++|+| +.+.|||||.|.+|.||++..+ +.+..|.+|...|.-+.|||.-.+.|+|++.|.+|.+||+.+
T Consensus 84 vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~t 163 (472)
T KOG0303|consen 84 VLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGT 163 (472)
T ss_pred ccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccC
Confidence 99999999 8899999999999999998643 457788999999999999998889999999999999999999
Q ss_pred CcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCC-CCeEEEEEccCCCeEEEEE
Q 036953 170 SECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTR-RSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 170 g~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~-~sVtsVafSPdG~~LlaS~ 242 (792)
++.+.++.|..-|.+++|+.||.+|++++.++ |+|||.++++...+ ...|. ..-..+.|-.+|. +++++
T Consensus 164 geali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e---~~~heG~k~~Raifl~~g~-i~tTG 234 (472)
T KOG0303|consen 164 GEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE---GVAHEGAKPARAIFLASGK-IFTTG 234 (472)
T ss_pred CceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee---cccccCCCcceeEEeccCc-eeeec
Confidence 99999999999999999999999999999555 99999999986541 12332 2334556888888 55544
No 55
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.77 E-value=7.7e-18 Score=184.94 Aligned_cols=236 Identities=18% Similarity=0.230 Sum_probs=180.6
Q ss_pred cEEEEEeCCCeEEEEeccCC-----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYC-----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~-----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
..+++++.|+.|++|++... ++.+|..+|..++|+.+|..|++++.|+.|++||+.+|+++..|. ....++++.
T Consensus 228 hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvk 306 (503)
T KOG0282|consen 228 HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVK 306 (503)
T ss_pred eEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeee
Confidence 45566677888888887542 578999999999999999999999999999999999999999986 456789999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h 222 (792)
|+|++.+.+++|+.|+.|+.||+++++.++.+. |-+.|..+.|-++|+.++++++++ ++||+.+..-..+ ......
T Consensus 307 f~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik--~i~~~~ 384 (503)
T KOG0282|consen 307 FHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK--NIADPE 384 (503)
T ss_pred cCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch--hhcchh
Confidence 999666999999999999999999999988885 778999999999999999999777 9999998887554 222334
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCC--c--------eeeecCCC---cccCCCCceEEEEecCCCEEEEee----
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDS--S--------MTRATSPG---YLRYPPPAVFVANAQSGDHVSLAA---- 285 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~--~--------~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s---- 285 (792)
.-+..++..+|+++++++-+-++.+-.... + ..-....| .+++.+..-++..+.++....++.
T Consensus 385 ~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~ 464 (503)
T KOG0282|consen 385 MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT 464 (503)
T ss_pred hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh
Confidence 456678899999997765444333321111 1 11111222 345666677777766666656655
Q ss_pred -ccCcccCCCceEEEeEECCCCcE
Q 036953 286 -ELPLMSSLPFLIVPSVSIDDSRI 308 (792)
Q Consensus 286 -~l~~l~gh~~~VwdV~~SpDGr~ 308 (792)
....++.|...+..+.|-|--.-
T Consensus 465 kl~~~lkah~~~ci~v~wHP~e~S 488 (503)
T KOG0282|consen 465 KLVSKLKAHDQPCIGVDWHPVEPS 488 (503)
T ss_pred hhhhccccCCcceEEEEecCCCcc
Confidence 34567778888888888886543
No 56
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.76 E-value=7.7e-17 Score=166.80 Aligned_cols=235 Identities=14% Similarity=0.070 Sum_probs=173.3
Q ss_pred EEEEEeCCCeEEEEeccC----CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 036953 71 GLVSWVEAESLRHLSAKY----CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH 146 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t----~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafS 146 (792)
.|+++..|.+..+|-... +++.+|.+.|+|+..+.+.+++++|+.|.+++|||+.+|+++..++ -..+|..+.|+
T Consensus 24 LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~ 102 (327)
T KOG0643|consen 24 LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFS 102 (327)
T ss_pred EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeec
Confidence 567788888888887643 3678999999999999999999999999999999999999999987 66789999999
Q ss_pred cCCCCEEEEEeCC-----CeEEEEECCC-------CcEEEEe-ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCc
Q 036953 147 PLRSEILASGSLD-----HEVRLWDANT-------SECIGSC-DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEE 212 (792)
Q Consensus 147 P~dg~lLaSgS~D-----gtVrLWDl~t-------g~~v~t~-~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~ 212 (792)
+ ++++++.+..+ +.|.++|++. .++...+ .+.+.++.+.|.|-+++|++|.+ +.|.+||++++++
T Consensus 103 ~-~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~ 181 (327)
T KOG0643|consen 103 F-GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE 181 (327)
T ss_pred c-CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce
Confidence 9 88887776543 5799999983 4555555 47799999999999999999984 5599999999865
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc-----cccCCCceeeecCC--CcccCCCCceEEEEecCCCE---EE
Q 036953 213 ASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND-----LDSSDSSMTRATSP--GYLRYPPPAVFVANAQSGDH---VS 282 (792)
Q Consensus 213 ~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d-----Lrs~d~~~~l~t~s--g~~~~p~~~~~l~~~ssG~~---~~ 282 (792)
.. .....|...|+.++|+||..++++++.+.. +++.....+..+.. +.....|-.-++.. ..|.. +.
T Consensus 182 ~v--~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~Vil-gGGqeA~dVT 258 (327)
T KOG0643|consen 182 LV--DSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVIL-GGGQEAMDVT 258 (327)
T ss_pred ee--echhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEe-cCCceeeeee
Confidence 32 233457889999999999999888777443 33322222222111 11112111111111 11111 11
Q ss_pred Ee-----------------eccCcccCCCceEEEeEECCCCcEEE
Q 036953 283 LA-----------------AELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 283 l~-----------------s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.. .+...++||=+.|..++|+|||+...
T Consensus 259 TT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYs 303 (327)
T KOG0643|consen 259 TTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYS 303 (327)
T ss_pred eecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccc
Confidence 11 14567899999999999999999988
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=8e-17 Score=164.26 Aligned_cols=188 Identities=21% Similarity=0.246 Sum_probs=158.0
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
....+..+.+.-++++ .+++..|+++|+|+...+ ++.+|...|..++.+.|...|++|+.
T Consensus 16 ~qgaV~avryN~dGnY----------------~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg 79 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNY----------------CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG 79 (307)
T ss_pred cccceEEEEEccCCCE----------------EEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC
Confidence 3345666666666654 355567999999999877 45789999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC--cEEEEec-cCCCeeEEEEcCCCc
Q 036953 116 DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS--ECIGSCD-FYRPIASIAFHAEGE 192 (792)
Q Consensus 116 DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg--~~v~t~~-h~s~V~sVafSpdG~ 192 (792)
|+.|.+||+++|+.++.|.+|.+.|+.++|+. +...+++|+.|.++++||.+.. ++++.+. ....|.++... +.
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~h 156 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EH 156 (307)
T ss_pred CceEEEEEcccCeeeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--cc
Confidence 99999999999999999999999999999998 8999999999999999999874 6788774 77889888864 56
Q ss_pred EEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 193 LLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 193 ~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
.|++|+ |++++.||++.+... ...-..+|++++|+++++..++++-+..++.-|
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~-----sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLS-----SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred EEEeeccCCcEEEEEeecceee-----hhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence 777777 777999999999743 233467899999999999999888777766444
No 58
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.76 E-value=3.2e-17 Score=177.17 Aligned_cols=275 Identities=14% Similarity=0.165 Sum_probs=203.4
Q ss_pred eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEE
Q 036953 35 REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTH 114 (792)
Q Consensus 35 rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS 114 (792)
+.+.-++..|.-+.|+++|+++|++.. |....+|....|..+++. .++.+|..+|.-+.||||.++|++|+
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSk-----D~Taiiw~v~~d~~~kl~----~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASK-----DSTAIIWIVVYDVHFKLK----KTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccC-----CceEEEEEEecCcceeee----eeeecccCceEEEEECCCCCeEEecC
Confidence 344457778999999999999888753 334467777777765553 35789999999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec--cCCCeeEEEEcCCC
Q 036953 115 GDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD--FYRPIASIAFHAEG 191 (792)
Q Consensus 115 ~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~--h~s~V~sVafSpdG 191 (792)
.|..+.+||+.+|.+...+. +|...+.+++|.| |+..+++|+.|+++..||+... .+..+. ....|.+++..+||
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred chHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCC
Confidence 99999999999999887775 4568999999999 9999999999999999999754 333332 34579999999999
Q ss_pred cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCccccCCCceeeecCCC----
Q 036953 192 ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSSDSSMTRATSPG---- 261 (792)
Q Consensus 192 ~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~d~~~~l~t~sg---- 261 (792)
+++++.. |.+|++|+........ ......+|++.+.+.+++++++.-. .||+..+...........
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr~----lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fi 442 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDRG----LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFI 442 (519)
T ss_pred cEEEEEecccceeeechhhhhhhc----cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceE
Confidence 9887776 5559999997766442 3445678999999999998888666 555543222111111111
Q ss_pred -cccCCC-CceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCC-cEEEEccccccCCCCcccccccccccc
Q 036953 262 -YLRYPP-PAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDS-RIDLQHASRRASSSNMQIEPSASLHLQ 333 (792)
Q Consensus 262 -~~~~p~-~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDG-r~lv~~~~~~~~Sg~v~~~~s~~~q~~ 333 (792)
...|-. ...|++.+++++.+.++. -+..++||...|.+|+++|.- +.++
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~A----------------------- 499 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFA----------------------- 499 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhh-----------------------
Confidence 111211 224555555555555444 234678899999999999976 4555
Q ss_pred CCCCCcccccccccccc
Q 036953 334 SDSNVEQDGTVPSMETF 350 (792)
Q Consensus 334 ~~~sgs~D~tv~p~~~~ 350 (792)
+++-|.||.-|...
T Consensus 500 ---SasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 500 ---SASDDGTIRIWGPS 513 (519)
T ss_pred ---ccCCCCeEEEecCC
Confidence 78889999999754
No 59
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.76 E-value=4.6e-18 Score=178.39 Aligned_cols=213 Identities=25% Similarity=0.306 Sum_probs=172.1
Q ss_pred CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------------C------cEEEEecCCCCCcEEEEEccCCC
Q 036953 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT------------G------NCLKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t------------g------k~v~~L~gH~~~VtsVafSP~dg 150 (792)
.-+..|+..+.+.+|++||.++++|+.|..|+|.|+.. + ..+++|..|...|+++.|+| ..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RE 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hh
Confidence 34678999999999999999999999999999999861 1 24678889999999999999 89
Q ss_pred CEEEEEeCCCeEEEEECCCC---cEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCe
Q 036953 151 EILASGSLDHEVRLWDANTS---ECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 151 ~lLaSgS~DgtVrLWDl~tg---~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
.+|++++.|++|+++|.... +..+.+....+|.++.|||.|.+|++|.++- +++||+++.++-.......+|.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 99999999999999999763 3344556678899999999999999999765 9999999988643222345688999
Q ss_pred EEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC
Q 036953 227 RAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS 306 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG 306 (792)
++|.+++.++..++++.+.. +++|++-++.|+..... .+ -...|.++.|+.+|
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~-----------------------IklwDGVS~rCv~t~~~--AH--~gsevcSa~Ftkn~ 317 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGA-----------------------IKLWDGVSNRCVRTIGN--AH--GGSEVCSAVFTKNG 317 (430)
T ss_pred eEEEecCCccEEEEeccCCc-----------------------EEeeccccHHHHHHHHh--hc--CCceeeeEEEccCC
Confidence 99999999996666655553 55566666666544431 11 24689999999999
Q ss_pred cEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 307 RIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 307 r~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
++|+ +...|.+|-.|+++.|-+-
T Consensus 318 kyiL--------------------------sSG~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 318 KYIL--------------------------SSGKDSTVKLWEISTGRML 340 (430)
T ss_pred eEEe--------------------------ecCCcceeeeeeecCCceE
Confidence 9999 6677999999999988544
No 60
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.76 E-value=1.1e-17 Score=183.77 Aligned_cols=208 Identities=20% Similarity=0.231 Sum_probs=169.7
Q ss_pred CCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vt 141 (792)
.++.|+.+.+..++.+||...- ++..-.-..++++.+||.+..+++..||.|.|||+.+...++.|+||...+.
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 3456677777888999998643 2333344678899999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEe
Q 036953 142 VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~ 220 (792)
||.+++ ++..|-||+.|++||.||+++++.+...++.+.|.++.++|++.+|++|..+. +.|......+. ..+.
T Consensus 556 cIdis~-dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k----yqlh 630 (705)
T KOG0639|consen 556 CIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK----YQLH 630 (705)
T ss_pred eEEecC-CCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccc----eeec
Confidence 999999 99999999999999999999999999999999999999999999999998544 77777655542 4567
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEe
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPS 300 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV 300 (792)
.|...|.++.|.+.|++++.++.++-+..|.. |.....| -.. -...|.++
T Consensus 631 lheScVLSlKFa~cGkwfvStGkDnlLnawrt-------------PyGasiF----------qsk-------E~SsVlsC 680 (705)
T KOG0639|consen 631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT-------------PYGASIF----------QSK-------ESSSVLSC 680 (705)
T ss_pred ccccEEEEEEecccCceeeecCchhhhhhccC-------------cccccee----------ecc-------ccCcceee
Confidence 78999999999999999999998765444321 1111111 111 24578899
Q ss_pred EECCCCcEEE
Q 036953 301 VSIDDSRIDL 310 (792)
Q Consensus 301 ~~SpDGr~lv 310 (792)
++|-|.++||
T Consensus 681 DIS~ddkyIV 690 (705)
T KOG0639|consen 681 DISFDDKYIV 690 (705)
T ss_pred eeccCceEEE
Confidence 9999999999
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.1e-17 Score=185.23 Aligned_cols=211 Identities=18% Similarity=0.259 Sum_probs=177.9
Q ss_pred CCCCceEeeecccceeeC---C-CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-----Cc
Q 036953 21 LRRRARNVSRLLAHREIS---P-KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----PL 91 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rels---~-~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----~L 91 (792)
...+...||+....+.+. . +..++.+++|. ...+.+| ..++.|..+|++.. .+
T Consensus 236 ~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssG----------------sr~~~I~~~dvR~~~~~~~~~ 297 (484)
T KOG0305|consen 236 TSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSG----------------SRDGKILNHDVRISQHVVSTL 297 (484)
T ss_pred ecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEe----------------cCCCcEEEEEEecchhhhhhh
Confidence 366788999877766655 3 45578888887 2334444 56777777777643 37
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe--CCCeEEEEECCC
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS--LDHEVRLWDANT 169 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS--~DgtVrLWDl~t 169 (792)
.+|...|+.++|++|+++||+|+.|+.+.|||....+....+..|...|..++|+|....+||+|+ .|+.|++||..+
T Consensus 298 ~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~ 377 (484)
T KOG0305|consen 298 QGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT 377 (484)
T ss_pred hcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC
Confidence 789999999999999999999999999999999888889999999999999999998889999985 799999999999
Q ss_pred CcEEEEeccCCCeeEEEEcCCCcEEEEEc---CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc
Q 036953 170 SECIGSCDFYRPIASIAFHAEGELLAVAS---GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 170 g~~v~t~~h~s~V~sVafSpdG~~LasgS---dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
++.+..+...+.|.++.|++..+.|+++- ++.|.||++.+.+.. ....+|...|..++++|||..+++++++..
T Consensus 378 g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~---~~l~gH~~RVl~la~SPdg~~i~t~a~DET 454 (484)
T KOG0305|consen 378 GARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV---AELLGHTSRVLYLALSPDGETIVTGAADET 454 (484)
T ss_pred CcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee---eeecCCcceeEEEEECCCCCEEEEecccCc
Confidence 99999999999999999999998777764 345999999886643 467789999999999999999999999888
Q ss_pred cccCCC
Q 036953 247 LDSSDS 252 (792)
Q Consensus 247 Lrs~d~ 252 (792)
++.|+.
T Consensus 455 lrfw~~ 460 (484)
T KOG0305|consen 455 LRFWNL 460 (484)
T ss_pred EEeccc
Confidence 887653
No 62
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.75 E-value=2.5e-16 Score=190.87 Aligned_cols=232 Identities=16% Similarity=0.194 Sum_probs=170.3
Q ss_pred CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC----c----EEEEecCCCCCcEEEEEccCCCCEEEEEeCCC
Q 036953 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG----N----CLKVLSGHRRTPWVVRFHPLRSEILASGSLDH 160 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg----k----~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg 160 (792)
+.+..|...|++++|+|++++|++|+.|+.|+|||+... . ....+. +...|.+++|++.++.+|++++.|+
T Consensus 477 ~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 477 GDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred ccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCC
Confidence 456679999999999999999999999999999997532 1 223333 3467999999986678999999999
Q ss_pred eEEEEECCCCcEEEEe-ccCCCeeEEEEcC-CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEcc-CCC
Q 036953 161 EVRLWDANTSECIGSC-DFYRPIASIAFHA-EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP-HAA 236 (792)
Q Consensus 161 tVrLWDl~tg~~v~t~-~h~s~V~sVafSp-dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP-dG~ 236 (792)
+|++||+.+++.+..+ .|...|++++|+| ++.+|++++ |+.|++||++++.... ...+...|.++.|++ ++.
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~----~~~~~~~v~~v~~~~~~g~ 631 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG----TIKTKANICCVQFPSESGR 631 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE----EEecCCCeEEEEEeCCCCC
Confidence 9999999999888887 5889999999996 788999998 4559999998876432 233456799999964 677
Q ss_pred eEEEEEeeCccccCCCc------eeeecCCC---cccCCCCceEEEEecCCCEEEEeec-----------cCcccCCCce
Q 036953 237 PFVLTAEVNDLDSSDSS------MTRATSPG---YLRYPPPAVFVANAQSGDHVSLAAE-----------LPLMSSLPFL 296 (792)
Q Consensus 237 ~LlaS~s~~dLrs~d~~------~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~s~-----------l~~l~gh~~~ 296 (792)
.+++++.+..+..|+.. ..+..... ...|.... .++.+..+..+.++.- ...+.+|...
T Consensus 632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~-~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~ 710 (793)
T PLN00181 632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSS-TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV 710 (793)
T ss_pred EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCC-EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence 77766665555544432 11221111 23333233 3334344445555431 2346678899
Q ss_pred EEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 297 IVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 297 VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+..+.++++|++|+ +|+.|++|..|+....
T Consensus 711 i~~v~~s~~~~~la--------------------------sgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 711 KNFVGLSVSDGYIA--------------------------TGSETNEVFVYHKAFP 740 (793)
T ss_pred eeEEEEcCCCCEEE--------------------------EEeCCCEEEEEECCCC
Confidence 99999999999999 8999999999986544
No 63
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.75 E-value=2.7e-17 Score=181.42 Aligned_cols=239 Identities=17% Similarity=0.200 Sum_probs=168.3
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC--------CcCC-CCCCeEEEEEcCCCCE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC--------PLVP-PPRSTIAAAFSPDGRT 109 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~--------~L~g-H~~~V~sLafSPDG~~ 109 (792)
..++.|..++.+|.|. ++++++.|..++.||+..- ++.. -...|++++|++.|..
T Consensus 165 hgtk~Vsal~~Dp~Ga----------------R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~ 228 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGA----------------RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQ 228 (641)
T ss_pred CCceEEEEeeecCCCc----------------eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCe
Confidence 3445666666666654 6677788888999987522 2322 2346899999999999
Q ss_pred EEEEECCCeEEEEECCCCcEE------------EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe
Q 036953 110 LASTHGDHTVKIIDCQTGNCL------------KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSC 176 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tgk~v------------~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~ 176 (792)
|++.+..-..+|+|-...+.+ ..-+||...+++.+|+|.+...++||+.|+++|+||+++- +.+..+
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 998888889999996533322 2235899999999999988899999999999999999874 333444
Q ss_pred c------cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCC--CeEEEEEccCCCeEEEEEeeCcc
Q 036953 177 D------FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRR--SLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 177 ~------h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~--sVtsVafSPdG~~LlaS~s~~dL 247 (792)
. ..-.++.++|++||+.||+|+ |+.|.+||...............|.. .|++|.|++||++|++-+.+..+
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL 388 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL 388 (641)
T ss_pred eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce
Confidence 2 223688999999999999998 55599999866554433344455765 89999999999999887776655
Q ss_pred ccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCC
Q 036953 248 DSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASS 319 (792)
Q Consensus 248 rs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~S 319 (792)
+.|+.+-.. .+++...++. ..+.-.+++||||-++|+...+..++.
T Consensus 389 KvWDLrq~k----------------------kpL~~~tgL~----t~~~~tdc~FSPd~kli~TGtS~~~~~ 434 (641)
T KOG0772|consen 389 KVWDLRQFK----------------------KPLNVRTGLP----TPFPGTDCCFSPDDKLILTGTSAPNGM 434 (641)
T ss_pred eeeeccccc----------------------cchhhhcCCC----ccCCCCccccCCCceEEEecccccCCC
Confidence 555433111 1122222221 234455789999999999444444443
No 64
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.75 E-value=2.7e-16 Score=168.28 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=135.7
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEE
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaS 112 (792)
+..++..+..++.+|+.+++++| +.|..-.+|+..++ .+.+|++.|+++.||.||.+||+
T Consensus 60 F~~H~~svFavsl~P~~~l~aTG----------------GgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLAT 123 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATG----------------GGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLAT 123 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEec----------------CCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEe
Confidence 44566678888888877666665 56666778887766 56799999999999999999999
Q ss_pred EECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCC
Q 036953 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEG 191 (792)
Q Consensus 113 GS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG 191 (792)
|..+|.|+||+..++.....+...-..|.=+.||| ...+|+.|+.||.+.+|.+.++...+.+ +|+.++++=.|.|+|
T Consensus 124 GdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG 202 (399)
T KOG0296|consen 124 GDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG 202 (399)
T ss_pred cCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC
Confidence 99999999999999998888876666777799999 9999999999999999999996555555 699999999999999
Q ss_pred cEEEEEcC-CeEEEEECCCCCc
Q 036953 192 ELLAVASG-HKLYIWPYNNKEE 212 (792)
Q Consensus 192 ~~LasgSd-d~V~IWDlrt~~~ 212 (792)
+.++++.+ +.|++||.+++..
T Consensus 203 Kr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 203 KRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred ceEEEEecCceEEEEecCCCce
Confidence 99999995 4599999998763
No 65
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.6e-17 Score=182.71 Aligned_cols=248 Identities=14% Similarity=0.212 Sum_probs=198.7
Q ss_pred cccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc----CCCCCCeEEEEEcCC
Q 036953 31 LLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL----VPPPRSTIAAAFSPD 106 (792)
Q Consensus 31 l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L----~gH~~~V~sLafSPD 106 (792)
+..+|.+..++.+|.++.++|...++-++ ...+.+.+|+..+.++ .-..-+|.+..|-+.
T Consensus 3 l~~krk~~~rSdRVKsVd~HPtePw~la~----------------LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaR 66 (794)
T KOG0276|consen 3 LDFKRKFQSRSDRVKSVDFHPTEPWILAA----------------LYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIAR 66 (794)
T ss_pred chhhhHhhccCCceeeeecCCCCceEEEe----------------eecCeeEEEecccceeeeeeeecccchhhheeeec
Confidence 34466677788899999999997765333 3345566666665533 234567889999988
Q ss_pred CCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-ccCCCeeE
Q 036953 107 GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSC-DFYRPIAS 184 (792)
Q Consensus 107 G~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~-~h~s~V~s 184 (792)
-+++++|+.|..|+||+.++++.++.|.+|...|++++.|| ...+++|+|.|-+||+||.+.+ .+.++| +|...|.+
T Consensus 67 knWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMq 145 (794)
T KOG0276|consen 67 KNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQ 145 (794)
T ss_pred cceEEEecCCceEEEEecccceeeEEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEE
Confidence 89999999999999999999999999999999999999999 7789999999999999999875 566777 59999999
Q ss_pred EEEcCCC-cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC-eEEEEEeeCccccCCCceeeecCCC
Q 036953 185 IAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA-PFVLTAEVNDLDSSDSSMTRATSPG 261 (792)
Q Consensus 185 VafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~-~LlaS~s~~dLrs~d~~~~l~t~sg 261 (792)
++|+|.. +.|++++ |.+|++|.+...... ..+.+|...|++|+|-+-|+ ..+.+++++
T Consensus 146 v~fnPkD~ntFaS~sLDrTVKVWslgs~~~n---fTl~gHekGVN~Vdyy~~gdkpylIsgaDD---------------- 206 (794)
T KOG0276|consen 146 VAFNPKDPNTFASASLDRTVKVWSLGSPHPN---FTLEGHEKGVNCVDYYTGGDKPYLISGADD---------------- 206 (794)
T ss_pred EEecCCCccceeeeeccccEEEEEcCCCCCc---eeeeccccCcceEEeccCCCcceEEecCCC----------------
Confidence 9999965 7899999 777999999877643 35668999999999988662 234444433
Q ss_pred cccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccc
Q 036953 262 YLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQD 341 (792)
Q Consensus 262 ~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D 341 (792)
..+++|+..+-.| ..++.||...|..++|.|.=-+|+ +||.|
T Consensus 207 ------~tiKvWDyQtk~C------V~TLeGHt~Nvs~v~fhp~lpiii--------------------------sgsED 248 (794)
T KOG0276|consen 207 ------LTIKVWDYQTKSC------VQTLEGHTNNVSFVFFHPELPIII--------------------------SGSED 248 (794)
T ss_pred ------ceEEEeecchHHH------HHHhhcccccceEEEecCCCcEEE--------------------------EecCC
Confidence 2466777666544 345667999999999999998888 89999
Q ss_pred cccccccccCC
Q 036953 342 GTVPSMETFPV 352 (792)
Q Consensus 342 ~tv~p~~~~~~ 352 (792)
.||.-|.....
T Consensus 249 GTvriWhs~Ty 259 (794)
T KOG0276|consen 249 GTVRIWNSKTY 259 (794)
T ss_pred ccEEEecCcce
Confidence 99999985544
No 66
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.75 E-value=3.9e-16 Score=163.86 Aligned_cols=269 Identities=14% Similarity=0.176 Sum_probs=190.3
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC-C-----CcCCCCCCeEEEEEcCCCCEEEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY-C-----PLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t-~-----~L~gH~~~V~sLafSPDG~~LaS 112 (792)
+-...+..++|+|.... .+..++.|+++|+|++.. + ....|.++|.+++|+.||.++++
T Consensus 25 pP~DsIS~l~FSP~~~~---------------~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADN---------------LLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred CcccchheeEeccccCc---------------eEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEe
Confidence 44557888889884332 223345677788887764 2 24579999999999999999999
Q ss_pred EECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCC--CEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCC
Q 036953 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS--EILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAE 190 (792)
Q Consensus 113 GS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg--~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpd 190 (792)
|+.|+.+++||+.+++ +.++..|.++|..+.|-+ .. ..|+||+.|++||.||.+...++.++.....+.+++. .
T Consensus 90 g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~ 165 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--L 165 (347)
T ss_pred eccCCceEEEEccCCC-eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--c
Confidence 9999999999999995 667778999999999987 44 4899999999999999999999999988888887754 3
Q ss_pred CcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCccccC--CCceeeecCC--
Q 036953 191 GELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSS--DSSMTRATSP-- 260 (792)
Q Consensus 191 G~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~--d~~~~l~t~s-- 260 (792)
..+++++. +..|.+|+++.+.... ......-+-.+++|+..+|.+..++++- +..|+.. ...+..+...
T Consensus 166 ~pm~vVata~r~i~vynL~n~~te~-k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~ 244 (347)
T KOG0647|consen 166 YPMAVVATAERHIAVYNLENPPTEF-KRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRST 244 (347)
T ss_pred CceeEEEecCCcEEEEEcCCCcchh-hhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccC
Confidence 45677666 4459999997665332 1111223456889999988876654332 3334433 2223332222
Q ss_pred ----------CcccC-CCCceEEEEecCCCEEEEee----ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccc
Q 036953 261 ----------GYLRY-PPPAVFVANAQSGDHVSLAA----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIE 325 (792)
Q Consensus 261 ----------g~~~~-p~~~~~l~~~ssG~~~~l~s----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~ 325 (792)
+..+| |....++.++++|.+..+.. -+...+.|...|.++.|+.+|.++++...-|-..|-.--+
T Consensus 245 ~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~~n 324 (347)
T KOG0647|consen 245 NSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYDWSKGHEGNN 324 (347)
T ss_pred CCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecccccccccCC
Confidence 12233 44456666666666644444 2334566899999999999999999777777766655444
Q ss_pred cc
Q 036953 326 PS 327 (792)
Q Consensus 326 ~s 327 (792)
|.
T Consensus 325 ~~ 326 (347)
T KOG0647|consen 325 PQ 326 (347)
T ss_pred CC
Confidence 44
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=4.5e-17 Score=167.56 Aligned_cols=218 Identities=17% Similarity=0.214 Sum_probs=172.6
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 95 PRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQT-GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 95 ~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~t-gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
.+.+..++|++ ..+.+++++.||.++|||+.. .+++..++.|...|.++.|++.+.+.+++++.|++||+||...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 57799999999 567899999999999999643 4578999999999999999998888999999999999999999999
Q ss_pred EEEe-ccCCCeeEEEEcCC-CcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC-ccc
Q 036953 173 IGSC-DFYRPIASIAFHAE-GELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN-DLD 248 (792)
Q Consensus 173 v~t~-~h~s~V~sVafSpd-G~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~-dLr 248 (792)
+.++ +|...|...+|+|. .+.|++++. +.+++||++.... ...+..|...|.++.|+.-..+++++++.+ -|+
T Consensus 140 v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk---~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 140 VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK---FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc---eeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence 9998 58899999999996 578888874 5599999988754 335677888999999999999999888743 334
Q ss_pred cCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccc
Q 036953 249 SSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSA 328 (792)
Q Consensus 249 s~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~ 328 (792)
.||-+.. ...+..+.+|..+|-.+.+||--.-++
T Consensus 217 ~wDir~~----------------------------r~pl~eL~gh~~AVRkvk~Sph~~~lL------------------ 250 (311)
T KOG0277|consen 217 GWDIRNL----------------------------RTPLFELNGHGLAVRKVKFSPHHASLL------------------ 250 (311)
T ss_pred EEehhhc----------------------------cccceeecCCceEEEEEecCcchhhHh------------------
Confidence 4332221 122333466999999999999876554
Q ss_pred cccccCCCCCccccccccccccCCCCCCCCCCcCCCCCCC
Q 036953 329 SLHLQSDSNVEQDGTVPSMETFPVIPPGREGSVNDSFPNG 368 (792)
Q Consensus 329 ~~q~~~~~sgs~D~tv~p~~~~~~~p~~~~~~~~~~~~~~ 368 (792)
.+.+||-|++-|+...+.--......|.-|--|
T Consensus 251 -------aSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g 283 (311)
T KOG0277|consen 251 -------ASASYDMTVRIWDPERQDSAIETVDHHTEFVCG 283 (311)
T ss_pred -------hhccccceEEecccccchhhhhhhhccceEEec
Confidence 179999999999976554334445555556444
No 68
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.75 E-value=1.3e-16 Score=165.08 Aligned_cols=207 Identities=17% Similarity=0.259 Sum_probs=171.7
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+.+|+++++.+.++.+|.+|++++.|.++.||-..+|+.+.++.||.+.|+++..+- +.++++||+.|.+++|||+++|
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC-CcceeeeccccceeEEEEcCCC
Confidence 678999999999999999999999999999999989999999999999999999998 8999999999999999999999
Q ss_pred cEEEEeccCCCeeEEEEcCCCcEEEEEcCC------eEEEEECCCCCc---ccCC-eEEecCCCCeEEEEEccCCCeEEE
Q 036953 171 ECIGSCDFYRPIASIAFHAEGELLAVASGH------KLYIWPYNNKEE---ASSP-IIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 171 ~~v~t~~h~s~V~sVafSpdG~~LasgSdd------~V~IWDlrt~~~---~~~~-~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
+++.++....+|..+.|+++|++++.+.++ .|.++|++.... ..+| ..+..+.+.++.+-|.|-+++|++
T Consensus 85 k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~ 164 (327)
T KOG0643|consen 85 KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA 164 (327)
T ss_pred cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE
Confidence 999999999999999999999998887742 299999985431 1122 334457789999999999999988
Q ss_pred EEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCC
Q 036953 241 TAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSS 320 (792)
Q Consensus 241 S~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg 320 (792)
+.++..|..+| +.+|....- ....|...|.++.+++|..+++
T Consensus 165 Ghe~G~is~~d-----------------------a~~g~~~v~-----s~~~h~~~Ind~q~s~d~T~Fi---------- 206 (327)
T KOG0643|consen 165 GHEDGSISIYD-----------------------ARTGKELVD-----SDEEHSSKINDLQFSRDRTYFI---------- 206 (327)
T ss_pred ecCCCcEEEEE-----------------------cccCceeee-----chhhhccccccccccCCcceEE----------
Confidence 87766555433 333322111 1223778999999999999999
Q ss_pred CccccccccccccCCCCCccccccccccccCC
Q 036953 321 NMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 321 ~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
++|.|.|--.||.-.-
T Consensus 207 ----------------T~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 207 ----------------TGSKDTTAKLVDVRTL 222 (327)
T ss_pred ----------------ecccCccceeeeccce
Confidence 8888888887775443
No 69
>PTZ00420 coronin; Provisional
Probab=99.74 E-value=3.5e-16 Score=181.89 Aligned_cols=194 Identities=11% Similarity=0.104 Sum_probs=141.8
Q ss_pred CCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------------CcCCCCCCeEEEEEcC
Q 036953 38 SPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------------PLVPPPRSTIAAAFSP 105 (792)
Q Consensus 38 s~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------------~L~gH~~~V~sLafSP 105 (792)
..+...+..+.|+|.. +..|++++.|++|++|+.... .+.+|...|.+++|+|
T Consensus 71 ~gH~~~V~~lafsP~~---------------~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P 135 (568)
T PTZ00420 71 KGHTSSILDLQFNPCF---------------SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNP 135 (568)
T ss_pred cCCCCCEEEEEEcCCC---------------CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECC
Confidence 3455667777777752 224566678888999987642 3568999999999999
Q ss_pred CCCE-EEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCee
Q 036953 106 DGRT-LASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIA 183 (792)
Q Consensus 106 DG~~-LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~ 183 (792)
++.. |++++.|++|+|||+.+++.+..+. |...|.+++|+| ++.+|++++.|++|++||+++++.+..+. |.+.+.
T Consensus 136 ~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~ 213 (568)
T PTZ00420 136 MNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKN 213 (568)
T ss_pred CCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCce
Confidence 8875 5789999999999999998877776 667899999999 99999999999999999999999888774 655433
Q ss_pred -----EEEEcCCCcEEEEEc-CC----eEEEEECCCCCcccCCeEEec---CCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 184 -----SIAFHAEGELLAVAS-GH----KLYIWPYNNKEEASSPIIVLK---TRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 184 -----sVafSpdG~~LasgS-dd----~V~IWDlrt~~~~~~~~~~~~---h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
...|++++.+|++++ ++ .|+|||++..... ..... +...+...-..+++..++++.++..++.+
T Consensus 214 s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p---l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~ 290 (568)
T PTZ00420 214 TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA---LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYY 290 (568)
T ss_pred eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc---eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEE
Confidence 234568888888866 42 4999999865432 22222 23333344344457766666566666654
Q ss_pred C
Q 036953 251 D 251 (792)
Q Consensus 251 d 251 (792)
+
T Consensus 291 e 291 (568)
T PTZ00420 291 Q 291 (568)
T ss_pred E
Confidence 4
No 70
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=2.9e-17 Score=190.00 Aligned_cols=214 Identities=17% Similarity=0.241 Sum_probs=160.1
Q ss_pred cC-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--------------------------------C----------
Q 036953 91 LV-PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT--------------------------------G---------- 127 (792)
Q Consensus 91 L~-gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t--------------------------------g---------- 127 (792)
+. .|.+.|++|.||+||++||+|+.|+.|+||.+.. .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 44 8999999999999999999999999999998654 0
Q ss_pred ------------------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcC
Q 036953 128 ------------------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHA 189 (792)
Q Consensus 128 ------------------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSp 189 (792)
+++..|.||.+.|.++.|+. .++|++.+.|+|||||++...+|+..|.|.+.|+||+|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnP 419 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNP 419 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecc
Confidence 11235679999999999996 7899999999999999999999999999999999999999
Q ss_pred -CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc---ee----ee---
Q 036953 190 -EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS---MT----RA--- 257 (792)
Q Consensus 190 -dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~---~~----l~--- 257 (792)
|.+||++|+ |++|+||++...+.. ....-.+-|++++|.|||+..++++-....+.++.. +. +.
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv----~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVV----DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeE----eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 568999999 889999999877632 234455789999999999988877664443322211 10 11
Q ss_pred -------cCCCcccCCCCceEEEEecCCCEEEEeec--c---CcccCCC--ceEEEeEECCCCcEEE
Q 036953 258 -------TSPGYLRYPPPAVFVANAQSGDHVSLAAE--L---PLMSSLP--FLIVPSVSIDDSRIDL 310 (792)
Q Consensus 258 -------t~sg~~~~p~~~~~l~~~ssG~~~~l~s~--l---~~l~gh~--~~VwdV~~SpDGr~lv 310 (792)
...|.-.+|...-.+.+.+.+..+.+..+ . ..++|+. ..-..+.|+.||++|+
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV 562 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence 11222223333334455556666666664 2 2334432 3456788999999999
No 71
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.73 E-value=5.5e-17 Score=170.37 Aligned_cols=271 Identities=17% Similarity=0.220 Sum_probs=193.8
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC----CCeEEEEeccC-------CCcCCCCCCeEEEEEcCCCC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE----AESLRHLSAKY-------CPLVPPPRSTIAAAFSPDGR 108 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~----d~sIrvWd~~t-------~~L~gH~~~V~sLafSPDG~ 108 (792)
+...+...+|+++|.++++|..+.++ +|+.... .....+....+ .+|..|.+.|+++.|+|...
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SI-----Kildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASI-----KILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceE-----EEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 34456677899999988888544333 4443320 00011111111 14668999999999999999
Q ss_pred EEEEEECCCeEEEEECCCCcE---EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ccCCC
Q 036953 109 TLASTHGDHTVKIIDCQTGNC---LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC----DFYRP 181 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~tgk~---v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~----~h~s~ 181 (792)
.|++|+.|++|++||+..... .+.|+ ...+|.++.|+| .+.+|+.|..-.++++||+++-+|...- +|...
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~a 263 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGA 263 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccc
Confidence 999999999999999864322 23333 456899999999 9999999999999999999999887664 58899
Q ss_pred eeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCccccCCCcee
Q 036953 182 IASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSSDSSMT 255 (792)
Q Consensus 182 V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~d~~~~ 255 (792)
|+++.+++.|++.++++ |+.|+|||--..+++. ..........|.+..|..+|+++++++. +|+|.++-....
T Consensus 264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~-t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVR-TIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred eeEEEecCCccEEEEeccCCcEEeeccccHHHHH-HHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEE
Confidence 99999999999999999 5559999988877664 1111224568999999999999998887 444444333222
Q ss_pred eecC-----------------CCcccCCC---CceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEcccc
Q 036953 256 RATS-----------------PGYLRYPP---PAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASR 315 (792)
Q Consensus 256 l~t~-----------------sg~~~~p~---~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~ 315 (792)
+... ..|.-+|. ..++.|++..++.+.+.. -+|.+.+-.+..||.+--++
T Consensus 343 YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s-----lgHn~a~R~i~HSP~~p~Fm----- 412 (430)
T KOG0640|consen 343 YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS-----LGHNGAVRWIVHSPVEPAFM----- 412 (430)
T ss_pred EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc-----cCCCCCceEEEeCCCCCcee-----
Confidence 2111 11222332 356677766666555544 35999999999999999888
Q ss_pred ccCCCCccccccccccccCCCCCccccccccccc
Q 036953 316 RASSSNMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 316 ~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
+++-|..++.|.-
T Consensus 413 ---------------------TcsdD~raRFWyr 425 (430)
T KOG0640|consen 413 ---------------------TCSDDFRARFWYR 425 (430)
T ss_pred ---------------------eecccceeeeeee
Confidence 7788888777763
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.73 E-value=2e-17 Score=174.12 Aligned_cols=182 Identities=18% Similarity=0.282 Sum_probs=151.8
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC------------cCCCCCCeEEEEEcCCCCEE
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP------------LVPPPRSTIAAAFSPDGRTL 110 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~------------L~gH~~~V~sLafSPDG~~L 110 (792)
++.+..|+|++.++.+| +.|+-|.+|+..+++ +.-+.++|.|+.||.|...|
T Consensus 215 h~EcA~FSPDgqyLvsg----------------SvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMl 278 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVSG----------------SVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEML 278 (508)
T ss_pred chhheeeCCCCceEeec----------------cccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHh
Confidence 56677788887765555 566777777776553 33478899999999999999
Q ss_pred EEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEc
Q 036953 111 ASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFH 188 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafS 188 (792)
++|+.||.|++|.+.+|.|++.|. +|...|+++.|+. |+..+++++.|.++++--++.|++++.+ +|.+.|+...|.
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 999999999999999999999998 8999999999999 8899999999999999999999999998 599999999999
Q ss_pred CCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 189 AEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 189 pdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+||..+++++ |++|++|+.++.++.. .....+..-+|+++..-|....-++.|
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~-Tfk~~~~d~~vnsv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLS-TFKPLGTDYPVNSVILLPKNPEHFIVC 411 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhh-hccCCCCcccceeEEEcCCCCceEEEE
Confidence 9999999988 5569999999988765 223344667888888888665433333
No 73
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.73 E-value=5.9e-16 Score=163.22 Aligned_cols=231 Identities=13% Similarity=0.147 Sum_probs=182.4
Q ss_pred CCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCcEEEEec
Q 036953 61 SDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGR--TLASTHGDHTVKIIDCQTGNCLKVLS 134 (792)
Q Consensus 61 ~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~--~LaSGS~DGtVrIWDl~tgk~v~~L~ 134 (792)
...++.-.+..+++++.|.+|++||.... .+..|.+.|+++.|.++.. .|++|+.||.|.+|+....+++..++
T Consensus 45 sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK 124 (362)
T KOG0294|consen 45 SITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLK 124 (362)
T ss_pred ceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeec
Confidence 34445567788999999999999999755 5678999999999999665 99999999999999999999999999
Q ss_pred CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCccc
Q 036953 135 GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEAS 214 (792)
Q Consensus 135 gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~ 214 (792)
+|.+.|+.++.|| .+++.++.+.|+.+++||+-+|+.-...........+.|+|.|.+|+....++|-||.+.......
T Consensus 125 ~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~ 203 (362)
T KOG0294|consen 125 AHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFR 203 (362)
T ss_pred ccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhh
Confidence 9999999999999 999999999999999999999887766665556666999999999999998999999998776432
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCC
Q 036953 215 SPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLP 294 (792)
Q Consensus 215 ~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~ 294 (792)
.......+.++.|-- +..+++++.+ ..+.+++..++..... +..|+
T Consensus 204 ----~i~~~~r~l~~~~l~-~~~L~vG~d~-----------------------~~i~~~D~ds~~~~~~------~~AH~ 249 (362)
T KOG0294|consen 204 ----EIENPKRILCATFLD-GSELLVGGDN-----------------------EWISLKDTDSDTPLTE------FLAHE 249 (362)
T ss_pred ----hhhccccceeeeecC-CceEEEecCC-----------------------ceEEEeccCCCcccee------eecch
Confidence 111224466777754 3335444432 2344455444333333 33489
Q ss_pred ceEEEeE--ECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 295 FLIVPSV--SIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 295 ~~VwdV~--~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
.+|-+++ ..|++.+|+ +.|.|..|.-||+--.
T Consensus 250 ~RVK~i~~~~~~~~~~lv--------------------------TaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 250 NRVKDIASYTNPEHEYLV--------------------------TASSDGFIKVWDIDME 283 (362)
T ss_pred hheeeeEEEecCCceEEE--------------------------EeccCceEEEEEcccc
Confidence 9998887 357899999 8899999999998766
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.72 E-value=6.4e-16 Score=178.94 Aligned_cols=245 Identities=17% Similarity=0.198 Sum_probs=188.5
Q ss_pred CcEEEEEeCCCeEEEEeccCC-----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC-----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~-----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
+..+.+...+.+|++|+...+ .+.+|.+.|.++++..-+.+|++|+.|.++++||+.+|+|..++.+|...|.++
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~ 297 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCL 297 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEE
Confidence 567888899999999998765 488999999999998778899999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEec
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLK 221 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~ 221 (792)
...+ .++++|+.|.+|++|++.++.++..+. |..+|+++..+ +.++++++ ++.|++||..+.+... ...+
T Consensus 298 ~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---sl~g 369 (537)
T KOG0274|consen 298 TIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---SLSG 369 (537)
T ss_pred EccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee---eecC
Confidence 8865 788999999999999999999999997 99999999987 77888888 5569999999888654 6677
Q ss_pred CCCCeEEEEEccCCCeEEEEEeeCccccCCCc------eeeecCCCc------------ccCCCCceEEEEecCCCEEEE
Q 036953 222 TRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS------MTRATSPGY------------LRYPPPAVFVANAQSGDHVSL 283 (792)
Q Consensus 222 h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~------~~l~t~sg~------------~~~p~~~~~l~~~ssG~~~~l 283 (792)
|...|+++.+... ..++.++-+..|+.||.. ..+...... .......+.+|+..++.++..
T Consensus 370 H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 370 HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRT 448 (537)
T ss_pred CcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeee
Confidence 9999999988765 545544444445555433 222222111 111234567777777777555
Q ss_pred eeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 284 AAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 284 ~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
..+. |.+.|+.+.+. + ..++ .++.|+++.-||.-.+.+.
T Consensus 449 ~~~~-----~~~~v~~l~~~-~-~~il--------------------------~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 449 LEGR-----HVGGVSALALG-K-EEIL--------------------------CSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred eccC-----CcccEEEeecC-c-ceEE--------------------------EEecCCeeEEEecccCchh
Confidence 5432 45667766666 2 2333 4778888888887777443
No 75
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.72 E-value=2.7e-16 Score=162.37 Aligned_cols=234 Identities=18% Similarity=0.249 Sum_probs=187.9
Q ss_pred CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE--EecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK--VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~--~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
..+.+|...|.+++|+.+|.+|++|+.|+++++|++...+... ...+|.+.|-.++|+|.+.+++++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 3467889999999999999999999999999999998765433 34689999999999998999999999999999999
Q ss_pred CCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 167 ANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 167 l~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
++.++++..+.....-.-+.|+|+|+++++++ ++.|.+.|.++.+... .......++.+.|+-+++.++++.+..
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~----~~~~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN----EEQFKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceee----hhcccceeeeeeecCCCCEEEEecCCc
Confidence 99999999998777777899999999999998 6669999998877432 233455678899998888888888877
Q ss_pred ccccCCCc-----eeeecCC-C--cccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEEEc
Q 036953 246 DLDSSDSS-----MTRATSP-G--YLRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDLQH 312 (792)
Q Consensus 246 dLrs~d~~-----~~l~t~s-g--~~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv~~ 312 (792)
.+...... ..++... + +..+.+...+|+.++.+-...|+. .+..+.-+...|--+.||-||++|+
T Consensus 170 ~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA-- 247 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA-- 247 (313)
T ss_pred eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceee--
Confidence 66533222 2222221 1 455667778888888777777776 4456777889999999999999999
Q ss_pred cccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 313 ASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 313 ~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
++|.|..|---++-.|
T Consensus 248 ------------------------SaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 248 ------------------------SASEDHFIDIAEVETG 263 (313)
T ss_pred ------------------------ccCccceEEeEecccC
Confidence 7888888876666555
No 76
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.71 E-value=1.3e-16 Score=174.37 Aligned_cols=184 Identities=18% Similarity=0.235 Sum_probs=151.1
Q ss_pred CceeecCCcEEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC--CC
Q 036953 62 DSSVRDAKRGLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQ--TG 127 (792)
Q Consensus 62 a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~--tg 127 (792)
..+-....+.+++++.|.++.+||+... .+.+|.+.|..++|++ +...|++++.|+.+.|||++ +.
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~ 262 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS 262 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC
Confidence 3444456778999999999999998633 2568999999999999 77889999999999999999 56
Q ss_pred cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-ccCCCeeEEEEcCCCc-EEEEEc-CCeEE
Q 036953 128 NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSC-DFYRPIASIAFHAEGE-LLAVAS-GHKLY 203 (792)
Q Consensus 128 k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~-~h~s~V~sVafSpdG~-~LasgS-dd~V~ 203 (792)
++.....+|.+.|.+++|+|.++.+||||+.|++|+|||+|+. +++.++ .|...|.+|.|+|... .|++++ |+.+.
T Consensus 263 ~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 263 KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLN 342 (422)
T ss_pred CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEE
Confidence 6777888999999999999999999999999999999999984 566666 5999999999999875 566655 55699
Q ss_pred EEECCCCCccc----------CC-eEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 204 IWPYNNKEEAS----------SP-IIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 204 IWDlrt~~~~~----------~~-~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
|||+.+-...+ ++ ....+|...|..+.|+|+...++++...+
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD 395 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED 395 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC
Confidence 99997654322 11 22335889999999999999988877633
No 77
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.71 E-value=2.2e-16 Score=161.06 Aligned_cols=205 Identities=17% Similarity=0.199 Sum_probs=166.3
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
.+..|.++|..+.|+-||++.++++.|++|++|+...+.+++++.+|...|..++.+. |...+++|+.|+.|.+||+++
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccc-cccccccCCCCceEEEEEccc
Confidence 3567899999999999999999999999999999999999999999999999999998 889999999999999999999
Q ss_pred CcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 170 SECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 170 g~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
|+.++.| .|...|+.+.|+.+...+++++ |.++++||.+...... ...+....+.|.++..+ +..|++.+-+..+
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-iQildea~D~V~Si~v~--~heIvaGS~DGtv 167 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-IQILDEAKDGVSSIDVA--EHEIVAGSVDGTV 167 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCc-cchhhhhcCceeEEEec--ccEEEeeccCCcE
Confidence 9999999 4999999999999999999999 6669999998876543 22344467889999886 3445655556666
Q ss_pred ccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCcccccc
Q 036953 248 DSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPS 327 (792)
Q Consensus 248 rs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s 327 (792)
+..+.++-.- .+ ......|.++.||+||...+
T Consensus 168 RtydiR~G~l------------------~s-------------Dy~g~pit~vs~s~d~nc~L----------------- 199 (307)
T KOG0316|consen 168 RTYDIRKGTL------------------SS-------------DYFGHPITSVSFSKDGNCSL----------------- 199 (307)
T ss_pred EEEEeeccee------------------eh-------------hhcCCcceeEEecCCCCEEE-----------------
Confidence 6544322110 00 01234678899999999888
Q ss_pred ccccccCCCCCccccccccccccCCCCC
Q 036953 328 ASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 328 ~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
.++-|.|+...|...|+--
T Consensus 200 ---------a~~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 200 ---------ASSLDSTLRLLDKETGKLL 218 (307)
T ss_pred ---------EeeccceeeecccchhHHH
Confidence 6778888888887777543
No 78
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.71 E-value=8.4e-17 Score=170.82 Aligned_cols=229 Identities=17% Similarity=0.221 Sum_probs=177.8
Q ss_pred cCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc---EEEEecCCCCC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN---CLKVLSGHRRT 139 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk---~v~~L~gH~~~ 139 (792)
-....+++++.|.++++||..++ .+..|.+.|..+.|+ ..++++++.|.++.+||+.... +.+++.||...
T Consensus 245 yd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa 322 (499)
T KOG0281|consen 245 YDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 322 (499)
T ss_pred ccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh
Confidence 34557889999999999999987 467899999999997 5689999999999999997654 34677899999
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCe
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPI 217 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~ 217 (792)
|..+.|+ .+++++++.|.+|++|++.+++++.++ +|...|.|+.+ .|+++++|+ |.+|++||+..+....
T Consensus 323 VNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR--- 394 (499)
T KOG0281|consen 323 VNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR--- 394 (499)
T ss_pred eeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHH---
Confidence 9999995 479999999999999999999999998 58899988887 588999988 5669999999998765
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceE
Q 036953 218 IVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLI 297 (792)
Q Consensus 218 ~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~V 297 (792)
...+|++-|.++.|+ .+.+++++.+..++.|+....+.... + .+.- .+..+..|.++|
T Consensus 395 vLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra-----~---------~~~~------Cl~~lv~hsgRV 452 (499)
T KOG0281|consen 395 VLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRA-----P---------ASTL------CLRTLVEHSGRV 452 (499)
T ss_pred HHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcc-----c---------ccch------HHHhhhhcccee
Confidence 567899999999996 56688877777777766443332100 0 0000 112233477777
Q ss_pred EEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 298 VPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 298 wdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
..+-|.. .-|+ +.+.|.||--||-.-+.|.
T Consensus 453 FrLQFD~--fqIv--------------------------sssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 453 FRLQFDE--FQII--------------------------SSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EEEeecc--eEEE--------------------------eccCCCeEEEEEcCCCCcc
Confidence 7777743 3344 6789999999995555433
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.70 E-value=1.1e-16 Score=173.18 Aligned_cols=225 Identities=13% Similarity=0.145 Sum_probs=175.5
Q ss_pred EEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
.+.+++.|..|++|+.... .|.+..+.|+.+.|.++++++++.+.|+.+++|+++..+...+|.+|++.|+++.
T Consensus 189 tlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak 268 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAK 268 (459)
T ss_pred hhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeeh
Confidence 4445567778888887533 4667788899999999999999999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCC
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTR 223 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~ 223 (792)
|.. ....+++|+.|.+||+||+....|.+++-..+.+..|..+ ...++++- |.+|++||.+...... .....
T Consensus 269 ~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~----sv~~g 341 (459)
T KOG0288|consen 269 FKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTR----SVPLG 341 (459)
T ss_pred hhc-cccceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceee----EeecC
Confidence 987 4445999999999999999999999998888888888765 34455554 5559999999887543 33445
Q ss_pred CCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEEC
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSI 303 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~S 303 (792)
+.|+++..++++..+++++.++.+..-|.+ .-..++.++.....-++. ...+.||
T Consensus 342 g~vtSl~ls~~g~~lLsssRDdtl~viDlR-----------------------t~eI~~~~sA~g~k~asD--wtrvvfS 396 (459)
T KOG0288|consen 342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLR-----------------------TKEIRQTFSAEGFKCASD--WTRVVFS 396 (459)
T ss_pred cceeeEeeccCCeEEeeecCCCceeeeecc-----------------------cccEEEEeeccccccccc--cceeEEC
Confidence 589999999999999988777655543222 111222333222222122 5568999
Q ss_pred CCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 304 DDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 304 pDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
|||+|++ +||-|+.|--|+++.|-
T Consensus 397 pd~~Yva--------------------------AGS~dgsv~iW~v~tgK 420 (459)
T KOG0288|consen 397 PDGSYVA--------------------------AGSADGSVYIWSVFTGK 420 (459)
T ss_pred CCCceee--------------------------eccCCCcEEEEEccCce
Confidence 9999999 89999999999999983
No 80
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.70 E-value=5.1e-16 Score=166.75 Aligned_cols=230 Identities=18% Similarity=0.228 Sum_probs=179.9
Q ss_pred cCCcEEEEEeCCCeEEEEeccCC---CcCCCCCCeEEEEEcC---CCCEEEEEECCCeEEEEECCCCcE----EEEecCC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYC---PLVPPPRSTIAAAFSP---DGRTLASTHGDHTVKIIDCQTGNC----LKVLSGH 136 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~---~L~gH~~~V~sLafSP---DG~~LaSGS~DGtVrIWDl~tgk~----v~~L~gH 136 (792)
.....|++++.|+.+++|+.+.. ++.||.+.|.+++|-- ....|++++.|.++++|..+.++. +..-.||
T Consensus 113 ~~~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GH 192 (423)
T KOG0313|consen 113 GASKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGH 192 (423)
T ss_pred ccCceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccc
Confidence 34678999999999999998744 6789999999888754 234699999999999999876643 3344599
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-------------------------CcEEEEe-ccCCCeeEEEEcCC
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-------------------------SECIGSC-DFYRPIASIAFHAE 190 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-------------------------g~~v~t~-~h~s~V~sVafSpd 190 (792)
.+.|.++...+ ++..+++++.|.+|++|+..+ +.++.++ +|..+|.++.|++
T Consensus 193 k~~V~sVsv~~-sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d- 270 (423)
T KOG0313|consen 193 KRSVDSVSVDS-SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD- 270 (423)
T ss_pred ccceeEEEecC-CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-
Confidence 99999999999 999999999999999999321 2344444 5889999999998
Q ss_pred CcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCc
Q 036953 191 GELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPA 269 (792)
Q Consensus 191 G~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~ 269 (792)
...+++++ |++|+.||+.+++... .......++++..+|..+.|++++.+..++.+|.+..
T Consensus 271 ~~v~yS~SwDHTIk~WDletg~~~~----~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~-------------- 332 (423)
T KOG0313|consen 271 ATVIYSVSWDHTIKVWDLETGGLKS----TLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG-------------- 332 (423)
T ss_pred CCceEeecccceEEEEEeeccccee----eeecCcceeEeecccccceeeecCCCCceeecCCCCC--------------
Confidence 55667777 8889999999998643 4456778999999998887777777777776665432
Q ss_pred eEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccc
Q 036953 270 VFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 270 ~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
+|.... ..+.+|..+|..+.++|...+.+ .+++||+|+.-||+
T Consensus 333 -------~gs~v~-----~s~~gH~nwVssvkwsp~~~~~~-------------------------~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 333 -------DGSVVS-----QSLIGHKNWVSSVKWSPTNEFQL-------------------------VSGSYDNTVKLWDV 375 (423)
T ss_pred -------CCceeE-----EeeecchhhhhheecCCCCceEE-------------------------EEEecCCeEEEEEe
Confidence 111111 12446999999999999988766 27999999999998
Q ss_pred cCCC
Q 036953 350 FPVI 353 (792)
Q Consensus 350 ~~~~ 353 (792)
-.--
T Consensus 376 RS~k 379 (423)
T KOG0313|consen 376 RSTK 379 (423)
T ss_pred ccCC
Confidence 7664
No 81
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.69 E-value=1e-15 Score=168.67 Aligned_cols=234 Identities=18% Similarity=0.203 Sum_probs=177.5
Q ss_pred eecccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEc
Q 036953 29 SRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFS 104 (792)
Q Consensus 29 ~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafS 104 (792)
|+..+.-.+...-..+..+.|+|.... ++++ .....+.+++..+. ++....+.|+++.|-
T Consensus 14 w~~~~~~~~~ke~~~vssl~fsp~~P~------d~aV----------t~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR 77 (487)
T KOG0310|consen 14 WRQETFPPVHKEHNSVSSLCFSPKHPY------DFAV----------TSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFR 77 (487)
T ss_pred hhhhcccccccccCcceeEecCCCCCC------ceEE----------ecccEEEEEecchhhhhhhHHhhccceeEEEee
Confidence 444333333334456888888886542 1111 11223444544433 244567889999999
Q ss_pred CCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCee
Q 036953 105 PDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIA 183 (792)
Q Consensus 105 PDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~ 183 (792)
.||+.|+.|...|.|+|||+.+...++.+.+|+.+|..+.|+|+++..+++|++|+.+++||+.++..+..+ .|++.|.
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence 999999999999999999988777888999999999999999999999999999999999999998865444 6999999
Q ss_pred EEEEcCCCc-EEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCC
Q 036953 184 SIAFHAEGE-LLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPG 261 (792)
Q Consensus 184 sVafSpdG~-~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg 261 (792)
+.+|+|... ++++|+ |++|++||++.... ....+.|..+|..+.|-|.|..++++++
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~elnhg~pVe~vl~lpsgs~iasAgG------------------ 216 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVELNHGCPVESVLALPSGSLIASAGG------------------ 216 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEecCCCceeeEEEcCCCCEEEEcCC------------------
Confidence 999999765 777777 67799999998862 3466789999999999999996665553
Q ss_pred cccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 262 YLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 262 ~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+..++|+...|.... ..+..|.-.|.++++..+++-|+
T Consensus 217 ------n~vkVWDl~~G~qll-----~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 217 ------NSVKVWDLTTGGQLL-----TSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred ------CeEEEEEecCCceeh-----hhhhcccceEEEEEeecCCceEe
Confidence 356777766554411 12333888999999999998888
No 82
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.69 E-value=6.2e-16 Score=169.16 Aligned_cols=223 Identities=17% Similarity=0.206 Sum_probs=164.8
Q ss_pred CcEEEEEeCCCeEEEEeccCC--------------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc-----
Q 036953 69 KRGLVSWVEAESLRHLSAKYC--------------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN----- 128 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~--------------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk----- 128 (792)
...+.+....+.+.+||..+. .|.+|.+.-+++.|++ ..-.|++++.|++|++||++...
T Consensus 137 p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~ 216 (422)
T KOG0264|consen 137 PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV 216 (422)
T ss_pred CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc
Confidence 344555566677777776421 4678999888999999 55689999999999999997532
Q ss_pred --EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC--CcEEEEe-ccCCCeeEEEEcCCC-cEEEEEc-CCe
Q 036953 129 --CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT--SECIGSC-DFYRPIASIAFHAEG-ELLAVAS-GHK 201 (792)
Q Consensus 129 --~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t--g~~v~t~-~h~s~V~sVafSpdG-~~LasgS-dd~ 201 (792)
....|.+|...|..++|++.+.+++++++.|+.+.|||+|+ .++.... .|.+.+++++|+|-+ ..||+++ |++
T Consensus 217 ~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~t 296 (422)
T KOG0264|consen 217 VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKT 296 (422)
T ss_pred ccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCc
Confidence 35678899999999999999999999999999999999995 4444444 589999999999965 5778888 556
Q ss_pred EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-eCccccCCCceeeecCC--CcccCCCCceEEEEecCC
Q 036953 202 LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDLDSSDSSMTRATSP--GYLRYPPPAVFVANAQSG 278 (792)
Q Consensus 202 V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dLrs~d~~~~l~t~s--g~~~~p~~~~~l~~~ssG 278 (792)
|.+||+|+.... +..+..|.+.|.+|.|+|+...++++++ +..+..||....-.... ....-|++.+|
T Consensus 297 V~LwDlRnL~~~--lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF------- 367 (422)
T KOG0264|consen 297 VALWDLRNLNKP--LHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLF------- 367 (422)
T ss_pred EEEeechhcccC--ceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeE-------
Confidence 999999988763 4667789999999999999998888777 33333443221111110 01111222222
Q ss_pred CEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 279 DHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 279 ~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
++.||...|.+..+.|+--+.+
T Consensus 368 ----------~HgGH~~kV~DfsWnp~ePW~I 389 (422)
T KOG0264|consen 368 ----------IHGGHTAKVSDFSWNPNEPWTI 389 (422)
T ss_pred ----------EecCcccccccccCCCCCCeEE
Confidence 2456888888888888876665
No 83
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.69 E-value=5e-16 Score=163.64 Aligned_cols=209 Identities=17% Similarity=0.211 Sum_probs=165.5
Q ss_pred CCCCCCceEeeecccceeeC-----------CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEecc
Q 036953 19 NHLRRRARNVSRLLAHREIS-----------PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAK 87 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels-----------~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~ 87 (792)
+....+++.||+-...+..+ .....|.++.|+.+..++++| +.|+.|++|.+.
T Consensus 230 sgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG----------------sqDGkIKvWri~ 293 (508)
T KOG0275|consen 230 SGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG----------------SQDGKIKVWRIE 293 (508)
T ss_pred eccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc----------------CcCCcEEEEEEe
Confidence 44567899999876554322 344568888888888777666 578888999888
Q ss_pred CCC----c-CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeE
Q 036953 88 YCP----L-VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162 (792)
Q Consensus 88 t~~----L-~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtV 162 (792)
+++ + ..|..+|+|+.||.|+..+++++.|.+++|.-+.+|++++.|.||...|+...|++ ++..+++++.||+|
T Consensus 294 tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtv 372 (508)
T KOG0275|consen 294 TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD-DGHHIISASSDGTV 372 (508)
T ss_pred cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC-CCCeEEEecCCccE
Confidence 874 3 37999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred EEEECCCCcEEEEec---cCCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe
Q 036953 163 RLWDANTSECIGSCD---FYRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP 237 (792)
Q Consensus 163 rLWDl~tg~~v~t~~---h~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~ 237 (792)
++|+.++.+|+.+|. ..-+|+++..-|.. ..++++. .++|+|.++...-... ...-....+...+.+.+|.|.+
T Consensus 373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs-fsSGkREgGdFi~~~lSpkGew 451 (508)
T KOG0275|consen 373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS-FSSGKREGGDFINAILSPKGEW 451 (508)
T ss_pred EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee-eccCCccCCceEEEEecCCCcE
Confidence 999999999999985 45578888877765 5666666 5669999986543211 0011112344556679999998
Q ss_pred EEEEEeeC
Q 036953 238 FVLTAEVN 245 (792)
Q Consensus 238 LlaS~s~~ 245 (792)
+.+.+.+.
T Consensus 452 iYcigED~ 459 (508)
T KOG0275|consen 452 IYCIGEDG 459 (508)
T ss_pred EEEEccCc
Confidence 88777654
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.69 E-value=2.8e-15 Score=163.13 Aligned_cols=199 Identities=19% Similarity=0.309 Sum_probs=160.5
Q ss_pred eEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCe
Q 036953 26 RNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRST 98 (792)
Q Consensus 26 r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V 98 (792)
.-+|+-...+.+. .+++.++.+.++++.. .+.+.+.|..|++|..... ....|..+|
T Consensus 243 av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~----------------~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V 306 (506)
T KOG0289|consen 243 AVLFDKPSNQILATLKGHTKKITSVKFHKDLD----------------TVITASADEIIRVWSVPLSSEPTSSRPHEEPV 306 (506)
T ss_pred eEEEecchhhhhhhccCcceEEEEEEeccchh----------------heeecCCcceEEeeccccccCccccccccccc
Confidence 3455555554444 4555666666666644 3455577888899987643 357899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC--CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG--HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 99 ~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g--H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
+.+..+|.|.+|++++.|+...+.|+.++.++.+... ..-.+++.+||| |+.+|.+|..|+.|++||+..+..+..|
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~F 385 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKF 385 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccC
Confidence 9999999999999999999999999999998776653 223589999999 9999999999999999999999888888
Q ss_pred -ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 177 -DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 177 -~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.|.++|..++|+.+|-+|+++.++. |++||+|+.+..+ .........+.++.|.+.|.++++.+.
T Consensus 386 pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~k--t~~l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 386 PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFK--TIQLDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccc--eeeccccccceeEEEcCCCCeEEeecc
Confidence 5999999999999999999999776 9999999887543 333344457999999999999888765
No 85
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.68 E-value=6.6e-16 Score=177.05 Aligned_cols=175 Identities=18% Similarity=0.235 Sum_probs=152.9
Q ss_pred cCCcEEEEEeCCCeEEEEeccC---C----CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKY---C----PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR 138 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t---~----~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~ 138 (792)
..+..|++++..+.|-+||+.. + -+..|.+.++++.|++ ...+|++|+.||+|++||++..+...++.+...
T Consensus 98 ~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSE 177 (839)
T KOG0269|consen 98 LYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSE 177 (839)
T ss_pred chhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccch
Confidence 4567789999999999999976 3 2568999999999999 778999999999999999999988888989999
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccC
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASS 215 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~ 215 (792)
.|++|.|+|..+.+++++.+.|.+++||++.. ++...+ .|.++|.++.|||++.+||+|+.|+ |+|||....+..
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-- 255 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-- 255 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc--
Confidence 99999999988999999999999999999974 555555 5999999999999999999999555 999999876543
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 216 PIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 216 ~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+........+|..|+|-|...+.+++++
T Consensus 256 ~~~tInTiapv~rVkWRP~~~~hLAtcs 283 (839)
T KOG0269|consen 256 PKHTINTIAPVGRVKWRPARSYHLATCS 283 (839)
T ss_pred ceeEEeecceeeeeeeccCccchhhhhh
Confidence 3455567789999999999999998887
No 86
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.68 E-value=7.2e-16 Score=166.98 Aligned_cols=209 Identities=18% Similarity=0.188 Sum_probs=167.8
Q ss_pred cEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf 145 (792)
..++..+.|+.+++|+.... +|.+|.+.|+++.|......+++|+.|.+|++||+....|.+++. -...+.+|+.
T Consensus 232 ~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~ 310 (459)
T KOG0288|consen 232 KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVC 310 (459)
T ss_pred ceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEe
Confidence 34566678899999998755 678999999999999877779999999999999999988877765 3345667777
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEE--ecC
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIV--LKT 222 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~--~~h 222 (792)
++ ..++++-.|++|++||.++..++......+.|+++..+++|..|.+++ |+.+.+.|+++.+... +..- ...
T Consensus 311 ~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~-~~sA~g~k~ 386 (459)
T KOG0288|consen 311 SI---SDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQ-TFSAEGFKC 386 (459)
T ss_pred cc---eeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEE-Eeecccccc
Confidence 54 678999999999999999999999998888999999999999888888 7779999999887443 1111 123
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEE
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVS 302 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~ 302 (792)
...++.+.|+|++.|+++++.+ ..+++|....|++...... .+....|.++.|
T Consensus 387 asDwtrvvfSpd~~YvaAGS~d-----------------------gsv~iW~v~tgKlE~~l~~----s~s~~aI~s~~W 439 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAAGSAD-----------------------GSVYIWSVFTGKLEKVLSL----STSNAAITSLSW 439 (459)
T ss_pred ccccceeEECCCCceeeeccCC-----------------------CcEEEEEccCceEEEEecc----CCCCcceEEEEE
Confidence 3448899999999988776644 3678888888888655552 222338999999
Q ss_pred CCCCcEEE
Q 036953 303 IDDSRIDL 310 (792)
Q Consensus 303 SpDGr~lv 310 (792)
+|.|+.++
T Consensus 440 ~~sG~~Ll 447 (459)
T KOG0288|consen 440 NPSGSGLL 447 (459)
T ss_pred cCCCchhh
Confidence 99999999
No 87
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.67 E-value=1.8e-15 Score=172.99 Aligned_cols=180 Identities=19% Similarity=0.312 Sum_probs=157.6
Q ss_pred CcEEEEEeCCCeEEEEeccCC----------------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC----------------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV 132 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~----------------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~ 132 (792)
+..+++++.|++++.|+.+.- +.....+.|.|+.+||||++|+++--|.+|+||-+++-+....
T Consensus 466 ~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFfls 545 (888)
T KOG0306|consen 466 NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLS 545 (888)
T ss_pred CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeee
Confidence 445677788888888886411 1234567899999999999999999999999999999999999
Q ss_pred ecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCC
Q 036953 133 LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNK 210 (792)
Q Consensus 133 L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~ 210 (792)
+.||.-+|.++..+| |+++++|||.|+.|++|-+.=|.|-+.+ .|.+.|.++.|-|+...+.+++ +++|+-||-.+.
T Consensus 546 LYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF 624 (888)
T KOG0306|consen 546 LYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF 624 (888)
T ss_pred ecccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhh
Confidence 999999999999999 9999999999999999999999998886 6999999999999999999998 556999999888
Q ss_pred CcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 211 EEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 211 ~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
+.+. ...+|...|++++..|+|.++++++.+..|+.|..
T Consensus 625 e~iq---~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 625 EEIQ---KLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER 663 (888)
T ss_pred hhhe---eeccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence 7654 67789999999999999998888888888887654
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=6.5e-16 Score=174.40 Aligned_cols=210 Identities=17% Similarity=0.198 Sum_probs=170.8
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--cEEEEecC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG--NCLKVLSG 135 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg--k~v~~L~g 135 (792)
.+..+++++.|+.|+.|+..+. .+..|.+.|+.++...+++.|+++|.|-+|++|+...+ -++.++..
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~ 115 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT 115 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc
Confidence 4557999999999999987532 45679999999999999999999999999999999877 57888899
Q ss_pred CCCCcEEEEE-ccCCCCEEEEEeCCCeEEEEECCCC--cEEEEe----------ccCCCeeEEEEcCCCcEEEEEcCCe-
Q 036953 136 HRRTPWVVRF-HPLRSEILASGSLDHEVRLWDANTS--ECIGSC----------DFYRPIASIAFHAEGELLAVASGHK- 201 (792)
Q Consensus 136 H~~~VtsVaf-SP~dg~lLaSgS~DgtVrLWDl~tg--~~v~t~----------~h~s~V~sVafSpdG~~LasgSdd~- 201 (792)
|...|.|+++ .+ +..+++|||.|+.|.+||++++ +.+..+ ++...|++++.++.|..|+.|+-.+
T Consensus 116 H~DYVkcla~~ak-~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 116 HKDYVKCLAYIAK-NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred ccchheeeeeccc-CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 9999999999 65 8899999999999999999987 233222 3567899999999998888888444
Q ss_pred EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEE
Q 036953 202 LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHV 281 (792)
Q Consensus 202 V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~ 281 (792)
|++||.++.+... .+.+|.+.|..+..++||..+++++++..|+ +|+....+|+
T Consensus 195 lr~wDprt~~kim---kLrGHTdNVr~ll~~dDGt~~ls~sSDgtIr-----------------------lWdLgqQrCl 248 (735)
T KOG0308|consen 195 LRLWDPRTCKKIM---KLRGHTDNVRVLLVNDDGTRLLSASSDGTIR-----------------------LWDLGQQRCL 248 (735)
T ss_pred eEEecccccccee---eeeccccceEEEEEcCCCCeEeecCCCceEE-----------------------eeecccccee
Confidence 9999999988643 4568999999999999999999988776444 4554455554
Q ss_pred EEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 282 SLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 282 ~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
..... |.-.||....+|+=..++
T Consensus 249 ~T~~v------H~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 249 ATYIV------HKEGVWALQSSPSFTHVY 271 (735)
T ss_pred eeEEe------ccCceEEEeeCCCcceEE
Confidence 44331 666688888887766666
No 89
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=2.3e-14 Score=145.46 Aligned_cols=236 Identities=20% Similarity=0.303 Sum_probs=174.2
Q ss_pred CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEec--cCCC-------cCCCCCCeEEEEEcC----CC
Q 036953 41 TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSA--KYCP-------LVPPPRSTIAAAFSP----DG 107 (792)
Q Consensus 41 tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~--~t~~-------L~gH~~~V~sLafSP----DG 107 (792)
...+.+.+|+|++.++++| +.|++|++... .+++ +.-|.+.|..++|-. .+
T Consensus 89 kgsiyc~~ws~~geliatg----------------sndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~ 152 (350)
T KOG0641|consen 89 KGSIYCTAWSPCGELIATG----------------SNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGG 152 (350)
T ss_pred CccEEEEEecCccCeEEec----------------CCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCc
Confidence 3467888999998887777 56677766544 3443 345788999999975 34
Q ss_pred CEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEE-EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---c----
Q 036953 108 RTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVV-RFHPLRSEILASGSLDHEVRLWDANTSECIGSCD---F---- 178 (792)
Q Consensus 108 ~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsV-afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~---h---- 178 (792)
..|++++ .|..|++-|..+|+..+.+.+|.+-|..+ .| ++-.+++|+.|++|++||++-..++.+++ +
T Consensus 153 ~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalysw---n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~gl 229 (350)
T KOG0641|consen 153 AILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSW---NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGL 229 (350)
T ss_pred eEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEe---cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCc
Confidence 5677665 47788888999999999999999998876 34 46899999999999999999999998874 1
Q ss_pred -CCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceee
Q 036953 179 -YRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTR 256 (792)
Q Consensus 179 -~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l 256 (792)
.+.|.+++..|.|++|+++-.+. ..+||++.++.++ ....|...|.+|.|+|...++++++.+..|+ +
T Consensus 230 essavaav~vdpsgrll~sg~~dssc~lydirg~r~iq---~f~phsadir~vrfsp~a~yllt~syd~~ik-------l 299 (350)
T KOG0641|consen 230 ESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ---RFHPHSADIRCVRFSPGAHYLLTCSYDMKIK-------L 299 (350)
T ss_pred ccceeEEEEECCCcceeeeccCCCceEEEEeeCCceee---eeCCCccceeEEEeCCCceEEEEecccceEE-------E
Confidence 35799999999999999998544 9999999988654 6677999999999999877766655444333 3
Q ss_pred ecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCC
Q 036953 257 ATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDS 336 (792)
Q Consensus 257 ~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~ 336 (792)
....|.....-+.. ++..|...+..+.+.|+.-.++
T Consensus 300 tdlqgdla~el~~~------------------vv~ehkdk~i~~rwh~~d~sfi-------------------------- 335 (350)
T KOG0641|consen 300 TDLQGDLAHELPIM------------------VVAEHKDKAIQCRWHPQDFSFI-------------------------- 335 (350)
T ss_pred eecccchhhcCceE------------------EEEeccCceEEEEecCccceee--------------------------
Confidence 33333222111111 1122666677777777776666
Q ss_pred CCccccccccccc
Q 036953 337 NVEQDGTVPSMET 349 (792)
Q Consensus 337 sgs~D~tv~p~~~ 349 (792)
+.|.|+|++.|..
T Consensus 336 sssadkt~tlwa~ 348 (350)
T KOG0641|consen 336 SSSADKTATLWAL 348 (350)
T ss_pred eccCcceEEEecc
Confidence 6788999988864
No 90
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.67 E-value=1.1e-15 Score=164.15 Aligned_cols=186 Identities=18% Similarity=0.302 Sum_probs=147.4
Q ss_pred CcEEEEEeCCCeEEEEeccC--------------------CCcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q 036953 69 KRGLVSWVEAESLRHLSAKY--------------------CPLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG 127 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t--------------------~~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg 127 (792)
.....+|++.+.+++|+... -++.+|...-+.++||| ....|++|..-+.|++|...++
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 33456667777777777631 03568999999999999 4446899999999999998886
Q ss_pred cE---EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC---cEEEEeccCCCeeEEEEcCCCcEEEEEcCCe
Q 036953 128 NC---LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS---ECIGSCDFYRPIASIAFHAEGELLAVASGHK 201 (792)
Q Consensus 128 k~---v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg---~~v~t~~h~s~V~sVafSpdG~~LasgSdd~ 201 (792)
.- ..-|.+|+..|-.++|+|.....|+||+.|++|+|||++.+ .++.+-.|.+.|+-|+|+.+-.+|++|+|++
T Consensus 245 ~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdG 324 (440)
T KOG0302|consen 245 SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDG 324 (440)
T ss_pred ceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCc
Confidence 52 23466899999999999988999999999999999999987 5666667999999999999988999999655
Q ss_pred -EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE-EeeCccccCCCce
Q 036953 202 -LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT-AEVNDLDSSDSSM 254 (792)
Q Consensus 202 -V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS-~s~~dLrs~d~~~ 254 (792)
++|||++.-+.......+..|..+|++|.|+|....+++. +.+..+..||..+
T Consensus 325 t~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 325 TLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 9999999887665345667799999999999987766554 4455555555443
No 91
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.66 E-value=6e-16 Score=166.09 Aligned_cols=173 Identities=20% Similarity=0.402 Sum_probs=132.3
Q ss_pred EEEEEeCCCeEEEEeccC-------CCcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc---EEEEecCCCCC
Q 036953 71 GLVSWVEAESLRHLSAKY-------CPLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN---CLKVLSGHRRT 139 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t-------~~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk---~v~~L~gH~~~ 139 (792)
.+.++..-+.|++|...+ ..+.+|.+.|..++||| ....|++|+.||+|+|||++.+. ++. .+.|...
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sD 304 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSD 304 (440)
T ss_pred ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCc
Confidence 344545555566666554 46789999999999999 56689999999999999999873 333 3789999
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCC---CcEEEEec-cCCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCc-
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANT---SECIGSCD-FYRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEE- 212 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~t---g~~v~t~~-h~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~- 212 (792)
|+.|.|+. +..+|++|+.||+++|||+++ ++++..|. |..+|++|.|+|.. ..|++++ |+.|.|||+.....
T Consensus 305 VNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 305 VNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred eeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 99999998 666999999999999999986 67888885 89999999999865 3444444 66799999965432
Q ss_pred -------------cc-CCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 213 -------------AS-SPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 213 -------------~~-~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+. ...++......+..|.||+.-.-++++.+..
T Consensus 384 ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~d 430 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAID 430 (440)
T ss_pred hhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccc
Confidence 11 1222333466788999999877777776544
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.66 E-value=5.3e-15 Score=161.03 Aligned_cols=238 Identities=13% Similarity=0.128 Sum_probs=184.6
Q ss_pred CcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
...+.+++.|+.+.++|...+ .+.||...|+.+.|+++...+++++.|..|+||......+......|..+|+.+.
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLS 310 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeee
Confidence 356788889999999998866 4689999999999999999999999999999999988877888889999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC---CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEe
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY---RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~---s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
.+| .+++|++++.|++..+.|++++.++....++ -.+++.+|||||.+|.+|. ++.|+|||++.+... ..+.
T Consensus 311 ~h~-tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~---a~Fp 386 (506)
T KOG0289|consen 311 LHP-TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV---AKFP 386 (506)
T ss_pred ecc-CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc---ccCC
Confidence 999 9999999999999999999999988877553 3488999999999999999 455999999988743 3566
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeeCccccCCCce-------eeecCC--CcccCCCCceEEEEecCCCEEEEee------
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSM-------TRATSP--GYLRYPPPAVFVANAQSGDHVSLAA------ 285 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~-------~l~t~s--g~~~~p~~~~~l~~~ssG~~~~l~s------ 285 (792)
+|..+|..++|+-+|-++++++.+..+..||-+. .+.... ....+.+...++..+.++-.++...
T Consensus 387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSW 466 (506)
T ss_pred CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccc
Confidence 7999999999999999998888755455554331 122111 1222333444444443222222222
Q ss_pred -ccCcccCCCceEEEeEECCCCcEEE
Q 036953 286 -ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 286 -~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
....+.+|.+....|.|....++++
T Consensus 467 ~~~~~~~~~sg~st~v~Fg~~aq~l~ 492 (506)
T KOG0289|consen 467 TEIKELADHSGLSTGVRFGEHAQYLA 492 (506)
T ss_pred eeeehhhhcccccceeeecccceEEe
Confidence 3334455677777888888888887
No 93
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.66 E-value=4.7e-14 Score=147.05 Aligned_cols=166 Identities=17% Similarity=0.227 Sum_probs=124.7
Q ss_pred EEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEE-EEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTL-ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~L-aSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf 145 (792)
.+++...++.+++|+..+++ +..+ ..+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+.. +..++|
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~ 80 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFAL 80 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEE
Confidence 34566778889999887653 2223 346789999999977 5667789999999999988877765544 567899
Q ss_pred ccCCCCEEE-EEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCC--eEEEEECCCCCcccCCeEEecC
Q 036953 146 HPLRSEILA-SGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGH--KLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 146 SP~dg~lLa-SgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd--~V~IWDlrt~~~~~~~~~~~~h 222 (792)
+| +++.++ +++.|+.|++||+.+++.+..+.....+.+++|+|+|++++++..+ .+++||.++.+... ....
T Consensus 81 ~~-~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~----~~~~ 155 (300)
T TIGR03866 81 HP-NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD----NVLV 155 (300)
T ss_pred CC-CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE----EEEc
Confidence 99 666654 5567899999999998888877766667899999999999988753 37888987765322 1122
Q ss_pred CCCeEEEEEccCCCeEEEEEe
Q 036953 223 RRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s 243 (792)
......+.|+|+++.+++++.
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred CCCccEEEECCCCCEEEEEcC
Confidence 334578999999998876653
No 94
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.66 E-value=7.1e-16 Score=158.42 Aligned_cols=225 Identities=16% Similarity=0.226 Sum_probs=178.6
Q ss_pred CCCCCCCCCCCCCCCCCCCceEeeecccceeeCC--CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEE
Q 036953 6 WPHDQNSLRSQPSNHLRRRARNVSRLLAHREISP--KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRH 83 (792)
Q Consensus 6 w~~~~~~~~~~~~~s~~s~~r~V~~l~~~rels~--~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrv 83 (792)
|...-++.+....+..+.=..+||+.....++.. +...|..++|+.+.+.+ ++++.++.+|+
T Consensus 63 w~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~l----------------ltgg~ekllrv 126 (334)
T KOG0278|consen 63 WSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYL----------------LTGGQEKLLRV 126 (334)
T ss_pred eeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhh----------------hccchHHHhhh
Confidence 4444443333333444555578999988888773 33467778888876644 45567788899
Q ss_pred EeccCC-----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC
Q 036953 84 LSAKYC-----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL 158 (792)
Q Consensus 84 Wd~~t~-----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~ 158 (792)
++.+.- .+.+|.+.|..+.|....+.|++.+.|++||+||..+++.++.+. ....|+++.+++ ++++|.+ ..
T Consensus 127 fdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~-dG~ilTi-a~ 203 (334)
T KOG0278|consen 127 FDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQ-DGRILTI-AY 203 (334)
T ss_pred hhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeecc-CCCEEEE-ec
Confidence 987643 467999999999999999999999999999999999999999987 667899999998 7766554 56
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe
Q 036953 159 DHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP 237 (792)
Q Consensus 159 DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~ 237 (792)
-+.|+.||..+-..++.+...-.|.+.+.+|+..++++|+.+. ++.||+.+++++. ....+|-++|.+|.|+|+|..
T Consensus 204 gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~--~~nkgh~gpVhcVrFSPdGE~ 281 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG--SYNKGHFGPVHCVRFSPDGEL 281 (334)
T ss_pred CceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceee--ecccCCCCceEEEEECCCCce
Confidence 7789999999999999999999999999999999999988555 9999999998765 224678999999999999996
Q ss_pred EEEEEeeCccccCC
Q 036953 238 FVLTAEVNDLDSSD 251 (792)
Q Consensus 238 LlaS~s~~dLrs~d 251 (792)
.++.+.+..|+.|.
T Consensus 282 yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 282 YASGSEDGTIRLWQ 295 (334)
T ss_pred eeccCCCceEEEEE
Confidence 65555566666553
No 95
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.66 E-value=1.9e-14 Score=148.93 Aligned_cols=262 Identities=14% Similarity=0.184 Sum_probs=189.8
Q ss_pred eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEEcC-CC
Q 036953 35 REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAFSP-DG 107 (792)
Q Consensus 35 rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLafSP-DG 107 (792)
|+...+.+.+.+++|.-+|..+++|. .|+++++|+.... ...+|.+.|..++|+| ..
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs----------------~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~ 77 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGS----------------FDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP 77 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecc----------------cCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC
Confidence 66677778899999999988777773 4455555554322 3568999999999999 77
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEE
Q 036953 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAF 187 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVaf 187 (792)
..|++++.|++|++||+..++++..+....+.| -+.|+| ++++++.++.|..|...|.++.+.+...+..-.++.++|
T Consensus 78 d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp-~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w 155 (313)
T KOG1407|consen 78 DLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSP-DGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISW 155 (313)
T ss_pred cceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcC-CCCEEEEecCcccEEEEEecccceeehhcccceeeeeee
Confidence 899999999999999999999998887555544 488999 999999999999999999999999999998899999999
Q ss_pred cCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCccccCCCceeeecCC-
Q 036953 188 HAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSSDSSMTRATSP- 260 (792)
Q Consensus 188 SpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~d~~~~l~t~s- 260 (792)
+-++.+|+... .+.|.|......+.. ..+..|.....++.|+|+|+++++++. +||+...-....+....
T Consensus 156 ~~~nd~Fflt~GlG~v~ILsypsLkpv---~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw 232 (313)
T KOG1407|consen 156 NNSNDLFFLTNGLGCVEILSYPSLKPV---QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW 232 (313)
T ss_pred cCCCCEEEEecCCceEEEEeccccccc---cccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC
Confidence 98887766655 477999988766643 356678899999999999999987665 55554322221111100
Q ss_pred --CcccCCCCceEEEEecCCCEEEEee---ccCccc-CCCceEEEeEECCCCcEEEEcccccc
Q 036953 261 --GYLRYPPPAVFVANAQSGDHVSLAA---ELPLMS-SLPFLIVPSVSIDDSRIDLQHASRRA 317 (792)
Q Consensus 261 --g~~~~p~~~~~l~~~ssG~~~~l~s---~l~~l~-gh~~~VwdV~~SpDGr~lv~~~~~~~ 317 (792)
--+.|......++.+++++.+-++. +..+.+ -+.+.-..|++.|.-.+|++..+..+
T Consensus 233 pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 233 PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCC
Confidence 0122333445555555555544433 222111 15667777888888888875544433
No 96
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.66 E-value=1.5e-15 Score=174.08 Aligned_cols=207 Identities=17% Similarity=0.263 Sum_probs=164.9
Q ss_pred CCCCCCceEeeeccc---cee---eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---
Q 036953 19 NHLRRRARNVSRLLA---HRE---ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC--- 89 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~---~re---ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~--- 89 (792)
.+...+-+.+|++.. .+. +..++..++++.|++.-. ..|++++.|++|+.||++..
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep---------------~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEP---------------NILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCc---------------cEEEecCCCceEEEEeeeccccc
Confidence 455667788998865 222 224455677777766532 35788899999999999754
Q ss_pred -CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC-CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 90 -PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQT-GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 90 -~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~t-gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
.+.+..+.|..++|+| .+.+|+++...|.+.+||++. .++...|.+|.++|.++.|+| +..+|||||.|++|+|||
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWD 248 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEe
Confidence 4567788999999999 889999999999999999975 457788899999999999999 999999999999999999
Q ss_pred CCCC--cEEEEeccCCCeeEEEEcCCCc-EEEEEc--CCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 167 ANTS--ECIGSCDFYRPIASIAFHAEGE-LLAVAS--GHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 167 l~tg--~~v~t~~h~s~V~sVafSpdG~-~LasgS--dd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
..+. +++.++....++.+++|-|... .|++++ ++. |+|||+++.-... ..+..|.+.++.++|.-....++.
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~--~t~~eH~~~vt~i~W~~~d~~~l~ 326 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY--ATFLEHTDSVTGIAWDSGDRINLW 326 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc--eeeeccCccccceeccCCCceeeE
Confidence 9864 4566677888999999999875 566666 344 9999999886543 456779999999999764454555
Q ss_pred EEe
Q 036953 241 TAE 243 (792)
Q Consensus 241 S~s 243 (792)
+++
T Consensus 327 s~s 329 (839)
T KOG0269|consen 327 SCS 329 (839)
T ss_pred eec
Confidence 554
No 97
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.6e-14 Score=152.47 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=122.0
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCC--
Q 036953 136 HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKE-- 211 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~-- 211 (792)
|+-.|-.+-... ++.+|++++.|.+|.|||++ |+.+..+. ....-...+.+|+|+++++++ .-.|++|..--.+
T Consensus 186 h~v~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG 263 (420)
T KOG2096|consen 186 HQVDIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG 263 (420)
T ss_pred cccceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence 344444555554 77899999999999999998 88888875 445566788899999999988 4449999873222
Q ss_pred ---cccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCC-------------------cccCCCCc
Q 036953 212 ---EASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPG-------------------YLRYPPPA 269 (792)
Q Consensus 212 ---~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg-------------------~~~~p~~~ 269 (792)
+......+.+|...|..++|+++...+++.+.+..++.|+.-+.+..... .+..+|..
T Consensus 264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g 343 (420)
T KOG2096|consen 264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG 343 (420)
T ss_pred chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC
Confidence 22223456779999999999999999999988777777665543322111 12233444
Q ss_pred eEEEEecCCCEEEEeec------cCcccCCCceEEEeEECCCCcEEEEccccc
Q 036953 270 VFVANAQSGDHVSLAAE------LPLMSSLPFLIVPSVSIDDSRIDLQHASRR 316 (792)
Q Consensus 270 ~~l~~~ssG~~~~l~s~------l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~ 316 (792)
..++.. .|..++++.. ...-+-|..-|.++.|++||++++..+.+-
T Consensus 344 ~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcGdr~ 395 (420)
T KOG2096|consen 344 DSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCGDRY 395 (420)
T ss_pred cEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeeccee
Confidence 444443 3334444431 112235889999999999999999544443
No 98
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.62 E-value=1.4e-14 Score=157.02 Aligned_cols=160 Identities=17% Similarity=0.185 Sum_probs=135.4
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc---EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN---CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk---~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
.+..|.+.|.-+.||++|++||+++.|.+..||++.... ..+++.+|..+|.-+.|+| |.++|++|+.|..+++||
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSP-DdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSP-DDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECC-CCCeEEecCchHheeecc
Confidence 467899999999999999999999999999999876543 4678889999999999999 999999999999999999
Q ss_pred CCCCcEEEEeccC--CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 167 ANTSECIGSCDFY--RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 167 l~tg~~v~t~~h~--s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+.+|.+...+.+. ..+.+++|.|||..+++|+ |..+..||++...... ........|.+++..+||+++++.+.
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~---W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN---WEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc---ccccccceeEEEEEcCCCcEEEEEec
Confidence 9999998888654 7889999999999999999 5559999997654221 11112356999999999999999998
Q ss_pred eCccccCCCc
Q 036953 244 VNDLDSSDSS 253 (792)
Q Consensus 244 ~~dLrs~d~~ 253 (792)
+..++..+..
T Consensus 375 d~~i~l~~~e 384 (519)
T KOG0293|consen 375 DKKIRLYNRE 384 (519)
T ss_pred ccceeeechh
Confidence 7776654433
No 99
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.62 E-value=4.1e-14 Score=151.75 Aligned_cols=161 Identities=16% Similarity=0.258 Sum_probs=142.5
Q ss_pred CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
..+..|.+.|++++.+|+.+++++|+.|..-.||++.++.....+.+|+..|+++.|+. ++.+|+||..+|.|++|+..
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh-dgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH-DGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc-CceEEEecCCCccEEEEEcc
Confidence 35678999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred CCcEEEEec-cCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc
Q 036953 169 TSECIGSCD-FYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 169 tg~~v~t~~-h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
++...+.+. .-..+.-+.|||.+.+|+.|+++ .|.+|.+.++... ....+|..++++=.|.|+|+++++.-.+..
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~---kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALC---KVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCccee---eEecCCCCCcccccccCCCceEEEEecCce
Confidence 998888875 55778899999999999999955 4999999886433 356779999999999999998888777666
Q ss_pred cccCCCc
Q 036953 247 LDSSDSS 253 (792)
Q Consensus 247 Lrs~d~~ 253 (792)
|+.|+.+
T Consensus 214 i~~Wn~k 220 (399)
T KOG0296|consen 214 IIVWNPK 220 (399)
T ss_pred EEEEecC
Confidence 6666544
No 100
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.62 E-value=3.5e-14 Score=148.73 Aligned_cols=184 Identities=15% Similarity=0.155 Sum_probs=147.3
Q ss_pred CCcEEEEEeCCCeEEEEeccCC-------------------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC-------------------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG 127 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~-------------------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg 127 (792)
.++.++++..|+.|.+||.+.. .-.+|+-.|.++.|-| |.-.|.+++.|+++++||.++-
T Consensus 55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTl 134 (397)
T KOG4283|consen 55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTL 134 (397)
T ss_pred cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccc
Confidence 3556788888888888887522 1246888899999999 8888999999999999999999
Q ss_pred cEEEEecCCCCCcEEEEEcc--CCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcE-EEEEc-CCeE
Q 036953 128 NCLKVLSGHRRTPWVVRFHP--LRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGEL-LAVAS-GHKL 202 (792)
Q Consensus 128 k~v~~L~gH~~~VtsVafSP--~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~-LasgS-dd~V 202 (792)
+....|+ -.+.|..-+|+| ....++++|..|-.|++.|+..|.+..++ +|...|.++.|+|..++ |++|+ |+.|
T Consensus 135 Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~i 213 (397)
T KOG4283|consen 135 QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAI 213 (397)
T ss_pred eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceE
Confidence 9888887 667889989988 23457888889999999999999999998 59999999999999875 56666 6669
Q ss_pred EEEECCCCC------------cccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 203 YIWPYNNKE------------EASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 203 ~IWDlrt~~------------~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
++||+++.. ..........|.+.|+.++|..++.++++.+-+..++.|+.
T Consensus 214 rlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 214 RLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred EEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 999998762 11101113347889999999999999988888777775554
No 101
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.61 E-value=2.4e-14 Score=169.61 Aligned_cols=189 Identities=20% Similarity=0.217 Sum_probs=148.7
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcE-------EEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEE
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRG-------LVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~-------L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaS 112 (792)
+...++++.|+++|.++++|..+..+..+... ..+......+.-|+.. ..+.+|...|..++|+|++.+|++
T Consensus 68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~-~~l~~H~~DV~Dv~Wsp~~~~lvS 146 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV-SILRGHDSDVLDVNWSPDDSLLVS 146 (942)
T ss_pred ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE-EEEecCCCccceeccCCCccEEEE
Confidence 45579999999999999999655443222221 0011112223333322 246789999999999999999999
Q ss_pred EECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-------cCCCeeEE
Q 036953 113 THGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-------FYRPIASI 185 (792)
Q Consensus 113 GS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-------h~s~V~sV 185 (792)
++.|++|.|||..+.+.+.++.+|.+.|.++.|.| -+++|++-+.|++|++|++.+-...+.+. ....+..+
T Consensus 147 ~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~Rl 225 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRL 225 (942)
T ss_pred ecccceEEEEccccceeeeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeec
Confidence 99999999999999999999999999999999999 99999999999999999987755555541 34568899
Q ss_pred EEcCCCcEEEEEc--C---CeEEEEECCCCCcccCCeEEecCCCCeEEEEEcc
Q 036953 186 AFHAEGELLAVAS--G---HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP 233 (792)
Q Consensus 186 afSpdG~~LasgS--d---d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP 233 (792)
.|+|||++|++.- + ..+.|.+-.+.+.. ..+.+|..++.+++|+|
T Consensus 226 SWSPDG~~las~nA~n~~~~~~~IieR~tWk~~---~~LvGH~~p~evvrFnP 275 (942)
T KOG0973|consen 226 SWSPDGHHLASPNAVNGGKSTIAIIERGTWKVD---KDLVGHSAPVEVVRFNP 275 (942)
T ss_pred ccCCCcCeecchhhccCCcceeEEEecCCceee---eeeecCCCceEEEEeCh
Confidence 9999999999975 2 23889887666643 36778999999999999
No 102
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.61 E-value=4.3e-14 Score=155.08 Aligned_cols=211 Identities=20% Similarity=0.264 Sum_probs=163.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
+|.+.+.+++.|+||++|++|+.|..|.|||..+.+.++.|.+|.+.|.+++|-. ..+.+++++.|++|++|++.....
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHH
Confidence 7888999999999999999999999999999999999999999999999999998 788899999999999999998776
Q ss_pred EEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 173 IGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 173 v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
+.++ +|.+.|.++.-..-++.+.+++ |.++++|++.... ...+.++.+.+-+++|-.+.. +++++.+..|..|
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees----qlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLW 353 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES----QLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALW 353 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccccceeEEEeccccc----eeeeeCCCCCeeeEEEecccc-eeeccCCceEEEe
Confidence 6654 7999999999888888888886 5669999994333 245677888999999986655 5555554444444
Q ss_pred CCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccc
Q 036953 251 DSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASL 330 (792)
Q Consensus 251 d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~ 330 (792)
+.... ..+|.....-|- ...+... .+++||..++.-|...+++
T Consensus 354 s~~KK------------kplf~~~~AHgv----~~~~~~~-~~~~Witsla~i~~sdL~a-------------------- 396 (479)
T KOG0299|consen 354 SLLKK------------KPLFTSRLAHGV----IPELDPV-NGNFWITSLAVIPGSDLLA-------------------- 396 (479)
T ss_pred eeccc------------CceeEeeccccc----cCCcccc-ccccceeeeEecccCceEE--------------------
Confidence 32211 011111100000 0000111 2558999999999999999
Q ss_pred cccCCCCCccccccccccccCC
Q 036953 331 HLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 331 q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
+||.|..|.-|.+.++
T Consensus 397 ------sGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 397 ------SGSWSGCVRLWKIEDG 412 (479)
T ss_pred ------ecCCCCceEEEEecCC
Confidence 8999999999999888
No 103
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=9.9e-16 Score=174.52 Aligned_cols=157 Identities=21% Similarity=0.381 Sum_probs=137.5
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+.+|..+|.++.|+++...|+.|+.||+|++||+...+.++.|.||...+..+.|+| -+.+.++|+.|+.+++||.+..
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc-ceEEeccccccccceehhhhcc
Confidence 789999999999999999999999999999999999999999999999999999999 8899999999999999999998
Q ss_pred cEEEEec-cCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-eCcc
Q 036953 171 ECIGSCD-FYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDL 247 (792)
Q Consensus 171 ~~v~t~~-h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dL 247 (792)
.|...+. |...+..+.|+|+|++++.++++ .++|||+..++... .+..|...+..+.|||..- ++++++ +..+
T Consensus 145 Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~---ef~~~e~~v~sle~hp~e~-Lla~Gs~d~tv 220 (825)
T KOG0267|consen 145 GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK---EFKSHEGKVQSLEFHPLEV-LLAPGSSDRTV 220 (825)
T ss_pred CceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccc---ccccccccccccccCchhh-hhccCCCCcee
Confidence 9999985 77788999999999999999974 59999998888543 4456889999999999776 444443 5545
Q ss_pred ccCCC
Q 036953 248 DSSDS 252 (792)
Q Consensus 248 rs~d~ 252 (792)
+.|+.
T Consensus 221 ~f~dl 225 (825)
T KOG0267|consen 221 RFWDL 225 (825)
T ss_pred eeecc
Confidence 55443
No 104
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.61 E-value=7.9e-15 Score=162.21 Aligned_cols=216 Identities=15% Similarity=0.220 Sum_probs=148.5
Q ss_pred ceEeeecc-------cceeeCC-CCceeeeEEeeCCCce--EeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCC
Q 036953 25 ARNVSRLL-------AHREISP-KTKYVPKRQWVDASKL--KTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPP 94 (792)
Q Consensus 25 ~r~V~~l~-------~~rels~-~tk~V~s~aWspd~~l--la~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH 94 (792)
.++.|+.. ..|.+.+ .+..++++.|++.+.. +.+|..-..+.|.++..+.-...+--.+-|+ ...+||
T Consensus 190 ~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm--~nTKGH 267 (641)
T KOG0772|consen 190 TVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDM--YNTKGH 267 (641)
T ss_pred eEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhh--hccCCc
Confidence 45667642 2344443 4457899999999876 3444433334343333222211111112222 134689
Q ss_pred CCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc-EEEEec-----CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 95 PRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN-CLKVLS-----GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 95 ~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk-~v~~L~-----gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
...++|.+|+| +...|++++.||+++|||++..+ .+.+|+ +..-.++.++|++ ++++|+.|..||.|.+||.
T Consensus 268 ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 268 IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDK 346 (641)
T ss_pred eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeec
Confidence 99999999999 56689999999999999997643 344443 3455789999999 9999999999999999998
Q ss_pred CCCc--EEEEe--ccCC--CeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 168 NTSE--CIGSC--DFYR--PIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 168 ~tg~--~v~t~--~h~s--~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
.... +...+ .|.. .|++|.|++||++|++-+ |+.+++||++..++......-+....+-+.++|+|+.+.|++
T Consensus 347 ~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~T 426 (641)
T KOG0772|consen 347 GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILT 426 (641)
T ss_pred CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEe
Confidence 6532 22222 2554 899999999999999977 677999999988754322233334566788999999996666
Q ss_pred EEe
Q 036953 241 TAE 243 (792)
Q Consensus 241 S~s 243 (792)
+.+
T Consensus 427 GtS 429 (641)
T KOG0772|consen 427 GTS 429 (641)
T ss_pred ccc
Confidence 554
No 105
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.61 E-value=1.2e-14 Score=153.12 Aligned_cols=251 Identities=16% Similarity=0.191 Sum_probs=181.7
Q ss_pred EEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC------C--------------
Q 036953 71 GLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ------T-------------- 126 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~------t-------------- 126 (792)
.+-+.+.|.+.++|.++++ ++.||.+.|++++|++.+.++++++.|++..||... .
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e 241 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEE 241 (481)
T ss_pred ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhh
Confidence 4556678899999999877 568999999999999999999999999999999731 0
Q ss_pred ----------------C----cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEE
Q 036953 127 ----------------G----NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASI 185 (792)
Q Consensus 127 ----------------g----k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sV 185 (792)
+ .++..|.+|.+.|.+..|-. .++.+++++.|.+..+||+++++++..+ +|....+.+
T Consensus 242 ~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHc 320 (481)
T KOG0300|consen 242 HSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHC 320 (481)
T ss_pred cccccccccccccccCCceeeeeeeeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccccCcchhcccc
Confidence 0 13456789999999999998 8999999999999999999999999988 689999999
Q ss_pred EEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc------eeeec
Q 036953 186 AFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS------MTRAT 258 (792)
Q Consensus 186 afSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~------~~l~t 258 (792)
+-||..+++++++.+. .++||++. .+.....+.+|.+.|+++.|+.+.+ ++.++.+..++.|+.+ .++.+
T Consensus 321 stHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt 397 (481)
T KOG0300|consen 321 STHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT 397 (481)
T ss_pred ccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec
Confidence 9999999999999555 99999983 3333456778999999999998877 5554443334444322 22332
Q ss_pred CC--CcccCCCCceEEEEecCCCEEEEee-------ccC--cccCCCceEEEeEECCCCc--EEEEccccccCCCCcccc
Q 036953 259 SP--GYLRYPPPAVFVANAQSGDHVSLAA-------ELP--LMSSLPFLIVPSVSIDDSR--IDLQHASRRASSSNMQIE 325 (792)
Q Consensus 259 ~s--g~~~~p~~~~~l~~~ssG~~~~l~s-------~l~--~l~gh~~~VwdV~~SpDGr--~lv~~~~~~~~Sg~v~~~ 325 (792)
.+ +..+.+.....++...+...+.++. .++ .-.+|..-|.++++..+-- -|+
T Consensus 398 dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLf--------------- 462 (481)
T KOG0300|consen 398 DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLF--------------- 462 (481)
T ss_pred CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccc---------------
Confidence 22 2222232333334433333344443 111 2346777777777765421 111
Q ss_pred ccccccccCCCCCccccccccccccC
Q 036953 326 PSASLHLQSDSNVEQDGTVPSMETFP 351 (792)
Q Consensus 326 ~s~~~q~~~~~sgs~D~tv~p~~~~~ 351 (792)
+..+|+.+.-|.+.-
T Consensus 463 -----------tcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 463 -----------TCGFDRMVAGWKINT 477 (481)
T ss_pred -----------cccccceeeeeEecc
Confidence 788999998888653
No 106
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.5e-14 Score=146.87 Aligned_cols=219 Identities=15% Similarity=0.152 Sum_probs=161.6
Q ss_pred CCcEEEEEeCCCeEEEEeccCC-------CcCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCc--EEEEecCC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC-------PLVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTGN--CLKVLSGH 136 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~-------~L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tgk--~v~~L~gH 136 (792)
.+.+|.+++.|++||++..+.+ .|.+|.++|..++|.. -|.+||+++.||.|.||.-..++ ....+..|
T Consensus 22 ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h 101 (299)
T KOG1332|consen 22 YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAH 101 (299)
T ss_pred hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhh
Confidence 4678999999999999998644 4789999999999987 89999999999999999987764 34566789
Q ss_pred CCCcEEEEEccCC-CCEEEEEeCCCeEEEEECCCC-c-EEEE--eccCCCeeEEEEcCC---C-----------cEEEEE
Q 036953 137 RRTPWVVRFHPLR-SEILASGSLDHEVRLWDANTS-E-CIGS--CDFYRPIASIAFHAE---G-----------ELLAVA 197 (792)
Q Consensus 137 ~~~VtsVafSP~d-g~lLaSgS~DgtVrLWDl~tg-~-~v~t--~~h~s~V~sVafSpd---G-----------~~Lasg 197 (792)
...|++++|.|++ +-.|++++.||.|.+.+.++. . .... ..|.-.+++++|.|. | +.|+++
T Consensus 102 ~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSg 181 (299)
T KOG1332|consen 102 SASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSG 181 (299)
T ss_pred cccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeecc
Confidence 9999999999943 456788899999999988764 2 2222 248889999999986 4 568888
Q ss_pred c-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC---CeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEE
Q 036953 198 S-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA---APFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVA 273 (792)
Q Consensus 198 S-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG---~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~ 273 (792)
+ |..|+||+....+-.. ...+.+|.+.|+.++|.|.- +.-+++++.+ ...++|
T Consensus 182 GcDn~VkiW~~~~~~w~~-e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqD----------------------g~viIw 238 (299)
T KOG1332|consen 182 GCDNLVKIWKFDSDSWKL-ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQD----------------------GTVIIW 238 (299)
T ss_pred CCccceeeeecCCcchhh-hhhhhhcchhhhhhhhccccCCCceeeEEecCC----------------------CcEEEE
Confidence 8 5559999998864322 23467799999999999964 2233444311 122233
Q ss_pred EecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEc
Q 036953 274 NAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQH 312 (792)
Q Consensus 274 ~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~ 312 (792)
.... +. .-. ...+++..+..+|.+.+|..|.+|+++
T Consensus 239 t~~~-e~-e~w-k~tll~~f~~~~w~vSWS~sGn~LaVs 274 (299)
T KOG1332|consen 239 TKDE-EY-EPW-KKTLLEEFPDVVWRVSWSLSGNILAVS 274 (299)
T ss_pred EecC-cc-Ccc-cccccccCCcceEEEEEeccccEEEEe
Confidence 3221 11 001 112344478899999999999999833
No 107
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.60 E-value=6.6e-15 Score=157.54 Aligned_cols=225 Identities=16% Similarity=0.134 Sum_probs=173.1
Q ss_pred EEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--------------------
Q 036953 71 GLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT-------------------- 126 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t-------------------- 126 (792)
.+++++.||.+++||+... .+..|.+.|..+++.. ..+++++.|++|+.|-+..
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~ 158 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRK 158 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccc
Confidence 4678889999999998753 5789999999999975 6788888999888887421
Q ss_pred -------C-----------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEc
Q 036953 127 -------G-----------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFH 188 (792)
Q Consensus 127 -------g-----------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafS 188 (792)
| .++..+.--...|.++.|+|....+|++|+.|+.|.|||++++++++.+-....-+.|+|+
T Consensus 159 ~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~Iswn 238 (433)
T KOG0268|consen 159 NSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWN 238 (433)
T ss_pred cccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecC
Confidence 1 1222222234567889999978889999999999999999999999998888888999999
Q ss_pred CCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCC
Q 036953 189 AEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPP 267 (792)
Q Consensus 189 pdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~ 267 (792)
|.+-.|++++.|. ++.||++..+... ....+|.+.|.+|+|+|.|+.+++++-+..|+..
T Consensus 239 PeafnF~~a~ED~nlY~~DmR~l~~p~--~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf----------------- 299 (433)
T KOG0268|consen 239 PEAFNFVAANEDHNLYTYDMRNLSRPL--NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIF----------------- 299 (433)
T ss_pred ccccceeeccccccceehhhhhhcccc--hhhcccceeEEEeccCCCcchhccccccceEEEe-----------------
Confidence 9888888888555 9999998877532 3456789999999999999999887766655541
Q ss_pred CceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccc
Q 036953 268 PAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSM 347 (792)
Q Consensus 268 ~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~ 347 (792)
....++-+-+.-. -....|.+|.||-|.++|+ +||-|..|.-|
T Consensus 300 ------~~~~~~SRdiYht-----kRMq~V~~Vk~S~Dskyi~--------------------------SGSdd~nvRlW 342 (433)
T KOG0268|consen 300 ------PVNHGHSRDIYHT-----KRMQHVFCVKYSMDSKYII--------------------------SGSDDGNVRLW 342 (433)
T ss_pred ------ecCCCcchhhhhH-----hhhheeeEEEEeccccEEE--------------------------ecCCCcceeee
Confidence 1223332222211 1456889999999999999 88899999999
Q ss_pred cccCCC
Q 036953 348 ETFPVI 353 (792)
Q Consensus 348 ~~~~~~ 353 (792)
..-.-|
T Consensus 343 ka~Ase 348 (433)
T KOG0268|consen 343 KAKASE 348 (433)
T ss_pred ecchhh
Confidence 855544
No 108
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=3.9e-13 Score=141.88 Aligned_cols=248 Identities=18% Similarity=0.201 Sum_probs=175.3
Q ss_pred CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc---CCCCCCeEEEEEcCCCCEEEEEECCC
Q 036953 41 TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL---VPPPRSTIAAAFSPDGRTLASTHGDH 117 (792)
Q Consensus 41 tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L---~gH~~~V~sLafSPDG~~LaSGS~DG 117 (792)
...+.++.|++.+. .|+..+.|+++++|+.....+ ..|..++.+++|.+ ...+++|+-||
T Consensus 13 ~d~IS~v~f~~~~~----------------~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg 75 (323)
T KOG1036|consen 13 EDGISSVKFSPSSS----------------DLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDG 75 (323)
T ss_pred hhceeeEEEcCcCC----------------cEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCc
Confidence 34567777775543 333445678888888876543 46899999999985 67899999999
Q ss_pred eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEE
Q 036953 118 TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVA 197 (792)
Q Consensus 118 tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~Lasg 197 (792)
.|+++|+++++.. .+..|..+|.++.+.+ ....+++|+.|++|++||.++......+....+|.++.. .|+.|++|
T Consensus 76 ~vr~~Dln~~~~~-~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg 151 (323)
T KOG1036|consen 76 QVRRYDLNTGNED-QIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVG 151 (323)
T ss_pred eEEEEEecCCcce-eeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEe
Confidence 9999999988754 4556999999999998 778999999999999999999878888877788988875 46677776
Q ss_pred c-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc-----ccC----CCceeeecCC-------
Q 036953 198 S-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL-----DSS----DSSMTRATSP------- 260 (792)
Q Consensus 198 S-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL-----rs~----d~~~~l~t~s------- 260 (792)
+ +.++.+||+++..... ......-+-.+++|++-|++.-+++++-+..+ +.. ..+...+.+.
T Consensus 152 ~~~r~v~iyDLRn~~~~~-q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~ 230 (323)
T KOG1036|consen 152 TSDRKVLIYDLRNLDEPF-QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE 230 (323)
T ss_pred ecCceEEEEEcccccchh-hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce
Confidence 5 5569999999887532 11122235568999999987766665543332 221 1112221111
Q ss_pred -----CcccCCCCceEEEEecCCCEEEEeec-----cCcccCCCceEEEeEECCCCcEEE
Q 036953 261 -----GYLRYPPPAVFVANAQSGDHVSLAAE-----LPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 261 -----g~~~~p~~~~~l~~~ssG~~~~l~s~-----l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+.+.|.+....|+.+.++..+..+.. +.-+...+..|-.++|+.||..|+
T Consensus 231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence 12334444445666666666666652 223333567899999999999998
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.60 E-value=1.5e-14 Score=159.37 Aligned_cols=219 Identities=12% Similarity=0.119 Sum_probs=166.4
Q ss_pred EeecCCCceee--cCCcEEEEEeCCCeEEEEeccCC-------CcC--CCCCCeEEEEEcCCCCEEEEEECCCeEEEEEC
Q 036953 56 KTCGPSDSSVR--DAKRGLVSWVEAESLRHLSAKYC-------PLV--PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDC 124 (792)
Q Consensus 56 la~G~~a~sv~--d~~~~L~S~s~d~sIrvWd~~t~-------~L~--gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl 124 (792)
++.|....++. .....++++. .+.|++||+... +|. .....|.++...|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 45555544443 4566777766 467999998632 232 23456899999999999999999999999999
Q ss_pred CCCcE--EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CC
Q 036953 125 QTGNC--LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GH 200 (792)
Q Consensus 125 ~tgk~--v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd 200 (792)
..... ...+....-....++.+| |.++.++|..||.|.+||+++...+..| +|.+.+.||..++||..|.+|+ |+
T Consensus 495 AapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 76543 233333345667799999 9999999999999999999999999998 5999999999999999999999 78
Q ss_pred eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCE
Q 036953 201 KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDH 280 (792)
Q Consensus 201 ~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~ 280 (792)
.|+.||++.+.+.. .......|.++-++|+++++++......++. +. .++..
T Consensus 574 tvRcWDlregrqlq----qhdF~SQIfSLg~cP~~dWlavGMens~vev----------------------lh--~skp~ 625 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQ----QHDFSSQIFSLGYCPTGDWLAVGMENSNVEV----------------------LH--TSKPE 625 (705)
T ss_pred ceeehhhhhhhhhh----hhhhhhhheecccCCCccceeeecccCcEEE----------------------Ee--cCCcc
Confidence 89999999988543 3334678999999999998887764332221 11 12222
Q ss_pred EEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 281 VSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 281 ~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
++... -|...|.++.|++.|++++
T Consensus 626 kyqlh------lheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 626 KYQLH------LHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred ceeec------ccccEEEEEEecccCceee
Confidence 22221 2899999999999999999
No 110
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=4.6e-13 Score=136.14 Aligned_cols=234 Identities=15% Similarity=0.152 Sum_probs=159.6
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC----------CCcCCCCCCeEEEEEcCCCCE
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY----------CPLVPPPRSTIAAAFSPDGRT 109 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t----------~~L~gH~~~V~sLafSPDG~~ 109 (792)
.++.+..++|+|.+.+.+.|.. ...+-.+.....+..-..+. ..-+-|.+.|+|.+|+|+|..
T Consensus 31 dsqairav~fhp~g~lyavgsn-------skt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel 103 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSN-------SKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL 103 (350)
T ss_pred chhheeeEEecCCCceEEeccC-------CceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence 3457888999999998887731 22222222222222211111 123468899999999999999
Q ss_pred EEEEECCCeEEEEECCCCcE-----EEEecCCCCCcEEEEEcc---CCCCEEEEEe-CCCeEEEEECCCCcEEEEe-ccC
Q 036953 110 LASTHGDHTVKIIDCQTGNC-----LKVLSGHRRTPWVVRFHP---LRSEILASGS-LDHEVRLWDANTSECIGSC-DFY 179 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tgk~-----v~~L~gH~~~VtsVafSP---~dg~lLaSgS-~DgtVrLWDl~tg~~v~t~-~h~ 179 (792)
|++|++|++|++..++...+ ...|.-|.+.|..++|-. ..+.+|++++ .|..|.+-|..+|+....+ +|.
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght 183 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT 183 (350)
T ss_pred EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence 99999999999987654322 345777999999999954 2456788876 4788888899999988887 588
Q ss_pred CCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEec----CCCCeEEEEEccCCCeEEEEEeeCccccCCCce
Q 036953 180 RPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLK----TRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSM 254 (792)
Q Consensus 180 s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~----h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~ 254 (792)
+.|.++ ++.+|-+|++++.++ |++||++-.......-.... ....|.+|+..|.|+. ++++..+
T Consensus 184 ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl-l~sg~~d--------- 252 (350)
T KOG0641|consen 184 GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL-LASGHAD--------- 252 (350)
T ss_pred ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce-eeeccCC---------
Confidence 888776 577899999999655 99999998776542211111 1367999999999994 4444211
Q ss_pred eeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 255 TRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 255 ~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
....+.+...+..+.-+ --|...|-+|.|||...+++
T Consensus 253 -------------ssc~lydirg~r~iq~f------~phsadir~vrfsp~a~yll 289 (350)
T KOG0641|consen 253 -------------SSCMLYDIRGGRMIQRF------HPHSADIRCVRFSPGAHYLL 289 (350)
T ss_pred -------------CceEEEEeeCCceeeee------CCCccceeEEEeCCCceEEE
Confidence 11222222222222222 22888899999999999999
No 111
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=2.5e-15 Score=171.26 Aligned_cols=170 Identities=22% Similarity=0.329 Sum_probs=149.6
Q ss_pred cEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf 145 (792)
..|..+..+++|++||+... +|.+|...+..+.|+|-+.++++|+.|+.+++||.+...|.+.+.+|...|..++|
T Consensus 83 ~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~l 162 (825)
T KOG0267|consen 83 RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRL 162 (825)
T ss_pred hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEee
Confidence 34566678999999999866 47899999999999999999999999999999999988899999999999999999
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCC
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTR 223 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~ 223 (792)
+| ++.++++++.|.++++||+..|+.+..|. |...+..+.|||..-+++.|+.++ |++||+++.+.+. ......
T Consensus 163 sP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~---s~~~~~ 238 (825)
T KOG0267|consen 163 SP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS---SGKPET 238 (825)
T ss_pred cC-CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee---ccCCcc
Confidence 99 99999999999999999999999999996 999999999999999999999554 9999999876443 223346
Q ss_pred CCeEEEEEccCCCeEEEEEe
Q 036953 224 RSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s 243 (792)
..|.++.|+|++..++....
T Consensus 239 ~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 239 DGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred CCceeeeecCCceeeecCch
Confidence 78999999999996554443
No 112
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.58 E-value=6.7e-14 Score=162.24 Aligned_cols=174 Identities=22% Similarity=0.311 Sum_probs=145.2
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
++.++++++.|+++++||..++ .+.+|...|.++... ...+++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v 337 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV 337 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence 4778999999999999998876 478999999999874 6678889999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCC-CcccCCeEEe
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNK-EEASSPIIVL 220 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~-~~~~~~~~~~ 220 (792)
..+ +.++++|+.|++|++||+.++++++.+ +|...|.++.+... ..+++|+ |..|++||+++. ++.. ...
T Consensus 338 ~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~---tl~ 410 (537)
T KOG0274|consen 338 QLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH---TLQ 410 (537)
T ss_pred Eec---CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh---hhc
Confidence 996 689999999999999999999999999 59999999988765 8888888 555999999999 5543 445
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
.|..-+..+.+ .++.|+.+..+..|+.||.
T Consensus 411 ~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~ 440 (537)
T KOG0274|consen 411 GHTSLVSSLLL--RDNFLVSSSADGTIKLWDA 440 (537)
T ss_pred CCccccccccc--ccceeEeccccccEEEeec
Confidence 56666655544 4666666666555665543
No 113
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=5.6e-14 Score=154.36 Aligned_cols=232 Identities=16% Similarity=0.158 Sum_probs=174.9
Q ss_pred CCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCE
Q 036953 77 EAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEI 152 (792)
Q Consensus 77 ~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~l 152 (792)
....|.+|....+. ..--++.|.+++-+|+|.+|+.|...+.+++|.+.+|+.+..+.+|...|+++.|+- |+.+
T Consensus 59 ~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~-dgs~ 137 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSD-DGSH 137 (476)
T ss_pred cCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeC-CCcE
Confidence 44567888876542 223467799999999999999998999999999999999999999999999999998 9999
Q ss_pred EEEEeCCCeEEEEECCC---------CcEEEEe-ccCCCeeEEEEcCCC--cEEEEEc-CCeEEEEECCCCCcccCCeEE
Q 036953 153 LASGSLDHEVRLWDANT---------SECIGSC-DFYRPIASIAFHAEG--ELLAVAS-GHKLYIWPYNNKEEASSPIIV 219 (792)
Q Consensus 153 LaSgS~DgtVrLWDl~t---------g~~v~t~-~h~s~V~sVafSpdG--~~LasgS-dd~V~IWDlrt~~~~~~~~~~ 219 (792)
|+|++.||.|.+|++-. -+++..| .|.-+|+++...+.| .+|++++ |..+++||+..+... ..
T Consensus 138 iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LL----lt 213 (476)
T KOG0646|consen 138 IITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLL----LT 213 (476)
T ss_pred EEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceee----EE
Confidence 99999999999998742 3456666 588899998887654 5788888 555999999988743 34
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCc--eE
Q 036953 220 LKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPF--LI 297 (792)
Q Consensus 220 ~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~--~V 297 (792)
......+.+++.+|.+..+++++++..+....... .++. ......-.....+. ....+.||.+ .|
T Consensus 214 i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~----~~~~---~~~v~~k~~~~~~t------~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 214 ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFK----LSGQ---SAGVNQKGRHEENT------QINVLVGHENESAI 280 (476)
T ss_pred EecCCcceeEEEcccccEEEecCCcceEEeeehhc----CCcc---cccccccccccccc------eeeeeccccCCcce
Confidence 44678899999999999888888766655322110 0000 00000000001111 2234556887 99
Q ss_pred EEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 298 VPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 298 wdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
.+++++-||..|+ +|..|.+|+-||+.+-
T Consensus 281 TcLais~DgtlLl--------------------------SGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 281 TCLAISTDGTLLL--------------------------SGDEDGKVCVWDIYSK 309 (476)
T ss_pred eEEEEecCccEEE--------------------------eeCCCCCEEEEecchH
Confidence 9999999999999 8999999999997665
No 114
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.56 E-value=9.1e-14 Score=158.26 Aligned_cols=200 Identities=18% Similarity=0.253 Sum_probs=162.8
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
.+.+++.+..|.++.+|..... .|.+|+..|+++....++. ++|||.|.++++|.. +++...+++|+..|+++
T Consensus 70 ~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv 146 (745)
T KOG0301|consen 70 DKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAV 146 (745)
T ss_pred cCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeee
Confidence 4567899999999999988654 6899999999999887777 999999999999976 56777899999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecC
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKT 222 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h 222 (792)
..-| ++ .++||+.|++||+|.- ++.+++| +|.+.|+.+++-+++.+|-++.|+.|++|++ +++. .....+|
T Consensus 147 ~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~---l~~~~gh 218 (745)
T KOG0301|consen 147 ASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEV---LLEMHGH 218 (745)
T ss_pred eecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCce---eeeeecc
Confidence 9998 44 8999999999999985 6777777 5999999999998887776666777999999 4443 3467789
Q ss_pred CCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCc-eEEEeE
Q 036953 223 RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPF-LIVPSV 301 (792)
Q Consensus 223 ~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~-~VwdV~ 301 (792)
..-|+++....++..+++++.+..++.|+.. .|...-. |+. .||++.
T Consensus 219 tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-------------------------e~~q~I~-------lPttsiWsa~ 266 (745)
T KOG0301|consen 219 TNFVYSISMALSDGLIVSTGEDRTLRIWKKD-------------------------ECVQVIT-------LPTTSIWSAK 266 (745)
T ss_pred ceEEEEEEecCCCCeEEEecCCceEEEeecC-------------------------ceEEEEe-------cCccceEEEE
Confidence 9999999977777768888877766665422 2322222 444 899999
Q ss_pred ECCCCcEEE
Q 036953 302 SIDDSRIDL 310 (792)
Q Consensus 302 ~SpDGr~lv 310 (792)
+-++|..++
T Consensus 267 ~L~NgDIvv 275 (745)
T KOG0301|consen 267 VLLNGDIVV 275 (745)
T ss_pred EeeCCCEEE
Confidence 999999988
No 115
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.55 E-value=1.3e-13 Score=144.65 Aligned_cols=221 Identities=16% Similarity=0.159 Sum_probs=166.5
Q ss_pred CCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc----------EEEEe-----cCCCCCcEEEEEccCCCCEEEE
Q 036953 92 VPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN----------CLKVL-----SGHRRTPWVVRFHPLRSEILAS 155 (792)
Q Consensus 92 ~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk----------~v~~L-----~gH~~~VtsVafSP~dg~lLaS 155 (792)
..|.+.|+++...+ .|+++++|+.||.|.+||++... .+..+ .+|+-.|..+.|-|.|...+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999999 89999999999999999997432 11111 2688899999999988889999
Q ss_pred EeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCC---cEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEE
Q 036953 156 GSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEG---ELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHF 231 (792)
Q Consensus 156 gS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG---~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVaf 231 (792)
++-|+++|+||.++.+....|..++.|.+-+|+|-. .++|+|.++- |++.|+..+... ..+.+|.+.|.+|.|
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s---H~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS---HTLSGHRDGVLAVEW 196 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce---eeeccccCceEEEEe
Confidence 999999999999999999999999999999999853 4677777554 999999998854 367789999999999
Q ss_pred ccCCCeEEEEEe-eCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 232 HPHAAPFVLTAE-VNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 232 SPdG~~LlaS~s-~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+|..++++++++ +..++.||.+.. +| .+.+.+...+.. .. .+..-..|.+.|..++++.||++++
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRra----sg-------cf~~lD~hn~k~--~p-~~~~n~ah~gkvngla~tSd~~~l~ 262 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRA----SG-------CFRVLDQHNTKR--PP-ILKTNTAHYGKVNGLAWTSDARYLA 262 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecc----cc-------eeEEeecccCcc--Cc-cccccccccceeeeeeecccchhhh
Confidence 999999998877 333444332211 00 011111111111 00 0111123888999999999999998
Q ss_pred EccccccCCCCccccccccccccCCCCCccccccccccccCCCCC
Q 036953 311 QHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVIPP 355 (792)
Q Consensus 311 ~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~p~ 355 (792)
+-..|..++-|....|+.+
T Consensus 263 --------------------------~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 263 --------------------------SCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred --------------------------hccCccceEEeecccCccc
Confidence 6667778888888888776
No 116
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.54 E-value=1.6e-13 Score=150.42 Aligned_cols=207 Identities=17% Similarity=0.151 Sum_probs=157.8
Q ss_pred ccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC--------CcCCCCCCeEEEEE
Q 036953 32 LAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC--------PLVPPPRSTIAAAF 103 (792)
Q Consensus 32 ~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~--------~L~gH~~~V~sLaf 103 (792)
....++.+...++.+++|+|.... ..++++...+.|-+|+..++ .+.+|..+|.++.|
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~--------------~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F 242 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENR--------------KLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKF 242 (498)
T ss_pred eecceeEecccceEEEEecccCcc--------------eEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEe
Confidence 333445566778899999998541 23344456677777777422 24689999999999
Q ss_pred cC-CCCEEEEEECCCeEEEEECCCCc--EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEe-cc
Q 036953 104 SP-DGRTLASTHGDHTVKIIDCQTGN--CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC-IGSC-DF 178 (792)
Q Consensus 104 SP-DG~~LaSGS~DGtVrIWDl~tgk--~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-v~t~-~h 178 (792)
+| +...+++.|.||+|++-|++.+. .+..+......+.++.|+. +...++.+..=|...+||++++.. ...+ -|
T Consensus 243 ~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh 321 (498)
T KOG4328|consen 243 SPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLH 321 (498)
T ss_pred cCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhh
Confidence 99 78899999999999999998764 3344443556778888988 666677777667999999998764 3333 37
Q ss_pred CCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCcccC-CeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 179 YRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASS-PIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 179 ~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~-~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
...|++++++|.. .+|++++ |++++|||++.-..... .+....|...|.++.|+|++-.|+++|.+..|+.++..
T Consensus 322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 7799999999987 4677888 66699999987765443 34567799999999999999999999999999987764
No 117
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.53 E-value=3.1e-13 Score=152.83 Aligned_cols=260 Identities=15% Similarity=0.152 Sum_probs=181.5
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCC----------cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE--ec
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCP----------LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV--LS 134 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~----------L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~--L~ 134 (792)
.....|+.+.+++.|.+++.+... ...|...|..+.|-|....|++.+.|.++++||+++++++.. +.
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 456678888899999999876432 246999999999999777899999999999999999988766 88
Q ss_pred CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc--------------------EEEEe--------ccCCCeeE--
Q 036953 135 GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE--------------------CIGSC--------DFYRPIAS-- 184 (792)
Q Consensus 135 gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~--------------------~v~t~--------~h~s~V~s-- 184 (792)
||.+.|.+++|.|++...|++|+.|+.|.|||++-.. +.... .+...|.+
T Consensus 142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssv 221 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSV 221 (720)
T ss_pred ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeee
Confidence 9999999999999999999999999999999997422 00000 12233444
Q ss_pred -EEEcCCCcEEEEEc--CCeEEEEECCCCCcccC--CeEEe---cC---CCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 185 -IAFHAEGELLAVAS--GHKLYIWPYNNKEEASS--PIIVL---KT---RRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 185 -VafSpdG~~LasgS--dd~V~IWDlrt~~~~~~--~~~~~---~h---~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
+.+..|...|++++ |+.|++||+++...... +.... .+ ...+.++.....|.+++++|.|+.|-.++..
T Consensus 222 Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~ 301 (720)
T KOG0321|consen 222 TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMR 301 (720)
T ss_pred EEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecc
Confidence 55668889999988 45599999998764321 11111 12 3457788888889999999997776655433
Q ss_pred ee----eecCCC------ccc--CCCCceEEEEecCCCEEEEee------ccCcccCCCceEEEeEECC--CCcEEEEcc
Q 036953 254 MT----RATSPG------YLR--YPPPAVFVANAQSGDHVSLAA------ELPLMSSLPFLIVPSVSID--DSRIDLQHA 313 (792)
Q Consensus 254 ~~----l~t~sg------~~~--~p~~~~~l~~~ssG~~~~l~s------~l~~l~gh~~~VwdV~~Sp--DGr~lv~~~ 313 (792)
.. +....| +.+ ..+...++.-+..+.....+. ...++.||...|..|++.| ++..+
T Consensus 302 s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~---- 377 (720)
T KOG0321|consen 302 SLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVA---- 377 (720)
T ss_pred ccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCce----
Confidence 11 111111 111 122334444444433322221 4456778899998888865 35555
Q ss_pred ccccCCCCccccccccccccCCCCCccccccccccccCCC
Q 036953 314 SRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPVI 353 (792)
Q Consensus 314 ~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~~ 353 (792)
+.+-|.++.-|++.++.
T Consensus 378 -----------------------TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 378 -----------------------TCSDDFRVKIWRLSNGL 394 (720)
T ss_pred -----------------------eeccCcceEEEeccCch
Confidence 46899999999997773
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.53 E-value=1.3e-13 Score=155.98 Aligned_cols=176 Identities=16% Similarity=0.262 Sum_probs=150.1
Q ss_pred CCcEEEEEeCCCeEEEEeccCC------CcCCCCCCeEEEEE-cCCCCEEEEEECCCeEEEEECCCCc--EEE-------
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC------PLVPPPRSTIAAAF-SPDGRTLASTHGDHTVKIIDCQTGN--CLK------- 131 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~------~L~gH~~~V~sLaf-SPDG~~LaSGS~DGtVrIWDl~tgk--~v~------- 131 (792)
.+..+++++.|.++++|+.... .+..|.+.|.|+++ -++...+|+|+-|+.|.|||++++. .+.
T Consensus 84 ~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~ 163 (735)
T KOG0308|consen 84 NGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTV 163 (735)
T ss_pred CCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence 4558999999999999998755 46789999999999 7788899999999999999999772 222
Q ss_pred -Eec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEEC
Q 036953 132 -VLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPY 207 (792)
Q Consensus 132 -~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDl 207 (792)
.+. |+...|++++.++ .+..+++|+..+.+++||.++++.+..+ +|..-|..+..++||..+++++ |+.|++||+
T Consensus 164 ~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL 242 (735)
T KOG0308|consen 164 NSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL 242 (735)
T ss_pred ccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec
Confidence 233 7899999999999 8899999999999999999998766555 7999999999999999888888 556999999
Q ss_pred CCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 208 NNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 208 rt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
...++.. ....|.+.|.++..+|+=..+.+++.+..|
T Consensus 243 gqQrCl~---T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i 279 (735)
T KOG0308|consen 243 GQQRCLA---TYIVHKEGVWALQSSPSFTHVYSGGRDGNI 279 (735)
T ss_pred cccceee---eEEeccCceEEEeeCCCcceEEecCCCCcE
Confidence 9888754 456688889999999998888887775544
No 119
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.53 E-value=6.4e-13 Score=145.97 Aligned_cols=201 Identities=18% Similarity=0.164 Sum_probs=158.1
Q ss_pred CCceeeeEEeeCCCceEeecCCCcee--------------------------ecCCcEEEEEeCCCeEEEEeccCC----
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSV--------------------------RDAKRGLVSWVEAESLRHLSAKYC---- 89 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv--------------------------~d~~~~L~S~s~d~sIrvWd~~t~---- 89 (792)
+.+.+.+++-+++++++++|..+.-+ +.+...+++++.|.++++|+....
T Consensus 201 h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve 280 (479)
T KOG0299|consen 201 HVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE 280 (479)
T ss_pred ccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH
Confidence 33567788889999888887755443 123345788888889999988643
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
++.+|.+.|..+....-++.+-+|+.|.++++|++. .+....|.+|.+.+-|++|-. ...+++|+.||.|.||++.+
T Consensus 281 tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 281 TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred HHhCCccceeeechhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeeecc
Confidence 567899998888887677777777789999999984 333456778999999999974 68999999999999999999
Q ss_pred CcEEEEec--c-----------CCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC
Q 036953 170 SECIGSCD--F-----------YRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 170 g~~v~t~~--h-----------~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG 235 (792)
.+++.+.. | +.+|++++..|...++++|+ ++.|++|-+..+-....++....-.+.|++++|+++|
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSG 437 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCC
Confidence 99887752 1 23899999999999999999 5559999998774333344455567889999999999
Q ss_pred CeEEEEEe
Q 036953 236 APFVLTAE 243 (792)
Q Consensus 236 ~~LlaS~s 243 (792)
++++++.+
T Consensus 438 k~ivagiG 445 (479)
T KOG0299|consen 438 KRIVAGIG 445 (479)
T ss_pred CEEEEecc
Confidence 98888765
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=4.4e-13 Score=147.43 Aligned_cols=215 Identities=14% Similarity=0.126 Sum_probs=159.7
Q ss_pred CCCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cCC
Q 036953 21 LRRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVP 93 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~g 93 (792)
..++..++|....+..+. .....+.+++-+|+|. .++.+...+.|.+|.+.++. +..
T Consensus 58 ~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~----------------~l~ag~i~g~lYlWelssG~LL~v~~a 121 (476)
T KOG0646|consen 58 LKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGY----------------FLLAGTISGNLYLWELSSGILLNVLSA 121 (476)
T ss_pred ccCccccccccCchhhhhhhcccccceeeeecCCCce----------------EEEeecccCcEEEEEeccccHHHHHHh
Confidence 445567777665544333 1112234444444433 33344467788888888885 368
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---------CCcEEEEecCCCCCcEEEEEccC-CCCEEEEEeCCCeEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ---------TGNCLKVLSGHRRTPWVVRFHPL-RSEILASGSLDHEVR 163 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~---------tgk~v~~L~gH~~~VtsVafSP~-dg~lLaSgS~DgtVr 163 (792)
|-..|+|+.|+-||.+|++|+.||.|.+|++. +-++++.|..|.-+|+++...+. -..+++|+|.|.++|
T Consensus 122 HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 122 HYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred hccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence 99999999999999999999999999999863 23578899999999999998872 346899999999999
Q ss_pred EEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCC--cc-----------cCCeEEecCCC--CeE
Q 036953 164 LWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKE--EA-----------SSPIIVLKTRR--SLR 227 (792)
Q Consensus 164 LWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~--~~-----------~~~~~~~~h~~--sVt 227 (792)
+||+..+..+.++.+...+.+++.+|-++.+++|+ +++|.+.++.... .. .......+|.. .|+
T Consensus 202 ~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred EEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 99999999999999999999999999999999998 5668888775433 00 01123445666 999
Q ss_pred EEEEccCCCeEEEEEeeCccccCC
Q 036953 228 AVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 228 sVafSPdG~~LlaS~s~~dLrs~d 251 (792)
+++.+-||..|+++..+..+..||
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEe
Confidence 999999999666665555444433
No 121
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.6e-12 Score=133.07 Aligned_cols=201 Identities=15% Similarity=0.177 Sum_probs=144.2
Q ss_pred CCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCE
Q 036953 77 EAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEI 152 (792)
Q Consensus 77 ~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~l 152 (792)
.|.+||..++.+++ +.||.+.|+.++.+|-+..+++++.|++|++||++..++...+.-...+| ++|.| .+-+
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp-~GLi 154 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDP-EGLI 154 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECC-CCcE
Confidence 35666666666553 57999999999999988999999999999999999888877776444444 78999 8889
Q ss_pred EEEEeCCCeEEEEECCC--CcEEEEec----cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecC--C
Q 036953 153 LASGSLDHEVRLWDANT--SECIGSCD----FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKT--R 223 (792)
Q Consensus 153 LaSgS~DgtVrLWDl~t--g~~v~t~~----h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h--~ 223 (792)
+|.+...+.|+|||++. +.+..++. .....+.+.|+|||++|+.+.++. +++.|.-++.... ....... .
T Consensus 155 fA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~-tfs~~~~~~~ 233 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS-TFSGYPNAGN 233 (311)
T ss_pred EEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee-eEeeccCCCC
Confidence 99988888999999996 45555553 356788999999999988888555 9999998887443 1111111 2
Q ss_pred CCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEEC
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSI 303 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~S 303 (792)
.+ -...|.||+++++.+..+. .+.+|..++|+......+. +.+.+.++.|+
T Consensus 234 ~~-~~a~ftPds~Fvl~gs~dg-----------------------~i~vw~~~tg~~v~~~~~~-----~~~~~~~~~fn 284 (311)
T KOG1446|consen 234 LP-LSATFTPDSKFVLSGSDDG-----------------------TIHVWNLETGKKVAVLRGP-----NGGPVSCVRFN 284 (311)
T ss_pred cc-eeEEECCCCcEEEEecCCC-----------------------cEEEEEcCCCcEeeEecCC-----CCCCccccccC
Confidence 23 4778999999877766544 2444555555554444432 34445555566
Q ss_pred CCCcEEE
Q 036953 304 DDSRIDL 310 (792)
Q Consensus 304 pDGr~lv 310 (792)
|---.++
T Consensus 285 P~~~mf~ 291 (311)
T KOG1446|consen 285 PRYAMFV 291 (311)
T ss_pred Cceeeee
Confidence 6555554
No 122
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=3.2e-13 Score=138.79 Aligned_cols=218 Identities=15% Similarity=0.170 Sum_probs=165.1
Q ss_pred CCCCCCceEeeecccc------eeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC--
Q 036953 19 NHLRRRARNVSRLLAH------REISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP-- 90 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~------rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~-- 90 (792)
.+...+.++||..... .++..+...+.+++|-.. ..+..|.+++.|+.+.+|+...++
T Consensus 28 TcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahP--------------k~G~iLAScsYDgkVIiWke~~g~w~ 93 (299)
T KOG1332|consen 28 TCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHP--------------KFGTILASCSYDGKVIIWKEENGRWT 93 (299)
T ss_pred eecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeeccc--------------ccCcEeeEeecCceEEEEecCCCchh
Confidence 4556677788865433 245566777888888543 123467788899999999987663
Q ss_pred ----cCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCC---cEEEEecCCCCCcEEEEEccC--CC---------
Q 036953 91 ----LVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTG---NCLKVLSGHRRTPWVVRFHPL--RS--------- 150 (792)
Q Consensus 91 ----L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tg---k~v~~L~gH~~~VtsVafSP~--dg--------- 150 (792)
...|...|++++|.| -|-.|++++.||.|.|.++++. ...+...+|.-.|++++|.|. .+
T Consensus 94 k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~ 173 (299)
T KOG1332|consen 94 KAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAA 173 (299)
T ss_pred hhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccc
Confidence 357999999999999 5678999999999999998754 233456789999999999982 12
Q ss_pred --CEEEEEeCCCeEEEEECCCCcEE--EEe-ccCCCeeEEEEcCCC----cEEEEEc-CCeEEEEECCCCCcccCCeEEe
Q 036953 151 --EILASGSLDHEVRLWDANTSECI--GSC-DFYRPIASIAFHAEG----ELLAVAS-GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 151 --~lLaSgS~DgtVrLWDl~tg~~v--~t~-~h~s~V~sVafSpdG----~~LasgS-dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
+.|++|+.|+.|++|+..+++-+ .++ .|.+.|+.++|.|.- .+|++++ |+++.||-.+..........+.
T Consensus 174 ~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~ 253 (299)
T KOG1332|consen 174 KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLE 253 (299)
T ss_pred ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccc
Confidence 57999999999999999886432 223 589999999999964 5799999 5569999887443333334444
Q ss_pred cCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
...+.++.+.|+..|+.|.++++++.+..+
T Consensus 254 ~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 254 EFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred cCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 567889999999999999888887765543
No 123
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=4.1e-13 Score=141.67 Aligned_cols=165 Identities=17% Similarity=0.248 Sum_probs=140.5
Q ss_pred CcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-cEEEEecCCCCCcEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG-NCLKVLSGHRRTPWVV 143 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg-k~v~~L~gH~~~VtsV 143 (792)
+..+++++.|.+..+||++++ .|.||....+-+.-+|..+++++.+.|.+.++||+... ..+..|+||...|+++
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~ 363 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSV 363 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEE
Confidence 345777888899999999877 57899999999999999999999999999999998743 4578899999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCe-EEe
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANT-SECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPI-IVL 220 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~t-g~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~-~~~ 220 (792)
.|+- +..+++|+.|.+||+||+++ ..++.++...++++.++.+..+++|+.--|++ |++||++.......|. ...
T Consensus 364 vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRq 441 (481)
T KOG0300|consen 364 VFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQ 441 (481)
T ss_pred EEec--CCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccc
Confidence 9986 56899999999999999998 56889999999999999999999999988776 9999998777554332 345
Q ss_pred cCCCCeEEEEEccCC
Q 036953 221 KTRRSLRAVHFHPHA 235 (792)
Q Consensus 221 ~h~~sVtsVafSPdG 235 (792)
+|..-|++++|..+-
T Consensus 442 gHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 442 GHRRMVTCCAWLEEH 456 (481)
T ss_pred ccceeeeeeeccccC
Confidence 688899999997543
No 124
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.52 E-value=4.9e-13 Score=146.40 Aligned_cols=173 Identities=18% Similarity=0.224 Sum_probs=142.9
Q ss_pred CcEEEEEeCCCeEEEEeccCC-------------------------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC-------------------------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKII 122 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~-------------------------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIW 122 (792)
+..+..+..+..|.+||.... .-.+|.+.|..++|+. -.+.||||+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 345666777888999987411 1236999999999998 45688999999999999
Q ss_pred ECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEeccCCCeeEEEEcCCCcE-EEEEc-C
Q 036953 123 DCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-SECIGSCDFYRPIASIAFHAEGEL-LAVAS-G 199 (792)
Q Consensus 123 Dl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~v~t~~h~s~V~sVafSpdG~~-LasgS-d 199 (792)
|+.++++..++..|.+.|.++.|+|..+.+|++|+.|++|++.|.+. ...-..+...+.|..++|++.... ++++. +
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCC
Confidence 99999999999999999999999999999999999999999999995 333445678899999999998754 44444 4
Q ss_pred CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 200 HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 200 d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+.|+-+|+|..... ......|.+.|.++++++.-..++++++
T Consensus 352 G~v~~~D~R~~~~~--vwt~~AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKP--VWTLKAHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred ceEEeeecCCCCCc--eeEEEeccCCcceEEecCCCCcceeecc
Confidence 55999999988632 3466779999999999999888888776
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.51 E-value=1.9e-11 Score=127.45 Aligned_cols=162 Identities=17% Similarity=0.212 Sum_probs=117.4
Q ss_pred eCCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC
Q 036953 76 VEAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGRTLASTHGDH-TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE 151 (792)
Q Consensus 76 s~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~~LaSGS~DG-tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~ 151 (792)
..++.+++|+..+.+.. .+...+.+++|+|+++.+++++.++ .+.+||..+++.+..+. ....+..+.|+| +++
T Consensus 92 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~ 169 (300)
T TIGR03866 92 EDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTA-DGK 169 (300)
T ss_pred CCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECC-CCC
Confidence 45778889988765321 2234468899999999999988775 56778998887766554 233567899999 777
Q ss_pred EEE-EEeCCCeEEEEECCCCcEEEEeccC--------CCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEe
Q 036953 152 ILA-SGSLDHEVRLWDANTSECIGSCDFY--------RPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 152 lLa-SgS~DgtVrLWDl~tg~~v~t~~h~--------s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
+++ ++..++.|++||+++++.+..+... .....++|+|++++++++. ++.|.+||+++.+... ..
T Consensus 170 ~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~----~~ 245 (300)
T TIGR03866 170 ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD----YL 245 (300)
T ss_pred EEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE----EE
Confidence 775 5556999999999998877665321 1235688999999865543 5569999998766432 22
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.+...+.+++|+|+|+.|+++..
T Consensus 246 ~~~~~~~~~~~~~~g~~l~~~~~ 268 (300)
T TIGR03866 246 LVGQRVWQLAFTPDEKYLLTTNG 268 (300)
T ss_pred EeCCCcceEEECCCCCEEEEEcC
Confidence 34457899999999998876653
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=2.5e-12 Score=135.81 Aligned_cols=231 Identities=16% Similarity=0.137 Sum_probs=155.0
Q ss_pred CcEEEEEeCCCeEEEEeccCC--------CcCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCC---------CcE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC--------PLVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQT---------GNC 129 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~--------~L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~t---------gk~ 129 (792)
+.++.+++.|+++++|+.+.. ..+.|.+.|..+.|.+ -|+.+|+++.|++++||.-.. -..
T Consensus 25 GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~ 104 (361)
T KOG2445|consen 25 GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR 104 (361)
T ss_pred CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEE
Confidence 446777788999999996422 3568999999999987 689999999999999997521 123
Q ss_pred EEEecCCCCCcEEEEEcc-CCCCEEEEEeCCCeEEEEECCCCcEEE------Eec--------cCCCeeEEEEcCCC---
Q 036953 130 LKVLSGHRRTPWVVRFHP-LRSEILASGSLDHEVRLWDANTSECIG------SCD--------FYRPIASIAFHAEG--- 191 (792)
Q Consensus 130 v~~L~gH~~~VtsVafSP-~dg~lLaSgS~DgtVrLWDl~tg~~v~------t~~--------h~s~V~sVafSpdG--- 191 (792)
..++......|+++.|.| ..+-.|++++.||++|||+...---+. .+. +.....|+.|++..
T Consensus 105 ~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~ 184 (361)
T KOG2445|consen 105 RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE 184 (361)
T ss_pred EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccC
Confidence 456677888999999999 456779999999999999876532222 122 45567899999753
Q ss_pred cEEEEEcCC------eEEEEECCCCC-cccCCeEEecCCCCeEEEEEccCCC---eEE-EEEeeCccccCCCceeeecCC
Q 036953 192 ELLAVASGH------KLYIWPYNNKE-EASSPIIVLKTRRSLRAVHFHPHAA---PFV-LTAEVNDLDSSDSSMTRATSP 260 (792)
Q Consensus 192 ~~LasgSdd------~V~IWDlrt~~-~~~~~~~~~~h~~sVtsVafSPdG~---~Ll-aS~s~~dLrs~d~~~~l~t~s 260 (792)
.+|++|++. +++||...... .......+..+.++|++++|.|+-- .++ +++++. |+.+.-+.......
T Consensus 185 p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~ 263 (361)
T KOG2445|consen 185 PLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIE 263 (361)
T ss_pred ceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhh
Confidence 689999976 68999876554 2222334457899999999999632 233 344333 55433222111000
Q ss_pred CcccCCCCceEEEEecCCCE-EEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 261 GYLRYPPPAVFVANAQSGDH-VSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 261 g~~~~p~~~~~l~~~ssG~~-~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.. .......-++. +.+. ..+.+|.+.||.+.+.=.|..|.
T Consensus 264 ~e-------e~~~~~~~~~l~v~~v---s~~~~H~~~VWrv~wNmtGtiLs 304 (361)
T KOG2445|consen 264 EE-------EVLAPDLMTDLPVEKV---SELDDHNGEVWRVRWNMTGTILS 304 (361)
T ss_pred hh-------cccCCCCccccceEEe---eeccCCCCceEEEEEeeeeeEEe
Confidence 00 00000000111 1111 23677999999999999999998
No 127
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.50 E-value=6.8e-12 Score=139.03 Aligned_cols=236 Identities=15% Similarity=0.196 Sum_probs=170.0
Q ss_pred CCCceEeeecccceeeC-------CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----C
Q 036953 22 RRRARNVSRLLAHREIS-------PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----P 90 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels-------~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~ 90 (792)
.++....|......... ...|+|.++.|.+++. ++++..++.|.+|+..++ +
T Consensus 220 Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-----------------viTgDS~G~i~Iw~~~~~~~~k~ 282 (626)
T KOG2106|consen 220 GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-----------------VITGDSGGNILIWSKGTNRISKQ 282 (626)
T ss_pred CCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-----------------EEeecCCceEEEEeCCCceEEeE
Confidence 45556666544332222 2236788888877765 345566777788877655 3
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE----------------------------------------E
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC----------------------------------------L 130 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~----------------------------------------v 130 (792)
...|.++|.++....+|..|- |+.|..|..||-+-.+. .
T Consensus 283 ~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 283 VHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred eeecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 348999999999999987555 99999999998431100 0
Q ss_pred EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCC
Q 036953 131 KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNN 209 (792)
Q Consensus 131 ~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt 209 (792)
....+|....+.++.+| +.+.++||+.|+.+++|+ ..+++++.....++.++.|+|.| .++.|. .+...+.|..+
T Consensus 362 ~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~ 437 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTET 437 (626)
T ss_pred EEEEecccceeeEEcCC-ChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccc
Confidence 12247888999999999 889999999999999999 77888888889999999999999 888888 56699999988
Q ss_pred CCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCc
Q 036953 210 KEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPL 289 (792)
Q Consensus 210 ~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~ 289 (792)
...+ .......+++.++|+|+|.+|++.+.+.. +++...+.+.+..... ..
T Consensus 438 ~~lv----~~~~d~~~ls~v~ysp~G~~lAvgs~d~~-----------------------iyiy~Vs~~g~~y~r~--~k 488 (626)
T KOG2106|consen 438 QDLV----TIHTDNEQLSVVRYSPDGAFLAVGSHDNH-----------------------IYIYRVSANGRKYSRV--GK 488 (626)
T ss_pred ceeE----EEEecCCceEEEEEcCCCCEEEEecCCCe-----------------------EEEEEECCCCcEEEEe--ee
Confidence 6543 23334889999999999998887775442 2222223322222221 12
Q ss_pred ccCCCceEEEeEECCCCcEEE
Q 036953 290 MSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 290 l~gh~~~VwdV~~SpDGr~lv 310 (792)
.. -..|.-++||+|+++++
T Consensus 489 ~~--gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 489 CS--GSPITHLDWSSDSQFLV 507 (626)
T ss_pred ec--CceeEEeeecCCCceEE
Confidence 22 27888999999999999
No 128
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.49 E-value=1.9e-12 Score=137.01 Aligned_cols=146 Identities=25% Similarity=0.355 Sum_probs=123.1
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC--EEEEEeCCCeEEEEECC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE--ILASGSLDHEVRLWDAN 168 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~--lLaSgS~DgtVrLWDl~ 168 (792)
+..|...+++++.+ +.++++|+.|.+|+|||+...+.+..+-.|.+.|+++.|.+ .-. .|++|+.||.|.+|+..
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcC
Confidence 46799999999995 99999999999999999999999999999999999999988 443 89999999999999999
Q ss_pred CCcEEEEec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 169 TSECIGSCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 169 tg~~v~t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.-.++.++. |.+.|+.++.||.+++-++-+ |..+++||+-+++... ...-...-+.|.|+|.|.++++...
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~----v~~L~~~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF----VLNLKNKATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccce----eeccCCcceeeEEcCCCCEEEEEec
Confidence 988888884 888999999999999866655 5559999998887543 2222223344999999998877664
No 129
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.49 E-value=4.8e-12 Score=133.40 Aligned_cols=248 Identities=11% Similarity=0.108 Sum_probs=179.9
Q ss_pred CceEeeecccceeeC-----CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCC
Q 036953 24 RARNVSRLLAHREIS-----PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPP 95 (792)
Q Consensus 24 ~~r~V~~l~~~rels-----~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~ 95 (792)
+.+++|+......+. ...+.+..+.|+.++. ++++++.|+.+++||+.+++ +..|.
T Consensus 50 ~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddgs----------------kVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd 113 (347)
T KOG0647|consen 50 GTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGS----------------KVFSGGCDKQAKLWDLASGQVSQVAAHD 113 (347)
T ss_pred CceEEEEEecCCcccchhhhccCCCeEEEEEccCCc----------------eEEeeccCCceEEEEccCCCeeeeeecc
Confidence 456777765532222 3445666777776654 56777889999999998875 45799
Q ss_pred CCeEEEEEcCCCC--EEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 96 RSTIAAAFSPDGR--TLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 96 ~~V~sLafSPDG~--~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
++|.++.|-+... .|++||.|++|+.||.+..+++.++. -.+.+.++..- ..+++.+..++.|.+|+++++...
T Consensus 114 ~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te 189 (347)
T KOG0647|consen 114 APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTE 189 (347)
T ss_pred cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcch
Confidence 9999999988544 89999999999999999999888886 55677777664 367888889999999999876433
Q ss_pred EEe---ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCC---------CCeEEEEEccCCCeEEE
Q 036953 174 GSC---DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTR---------RSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 174 ~t~---~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~---------~sVtsVafSPdG~~Lla 240 (792)
... ..+-.+++|+..+|.+..+.|+ ++++.|..++.+.... -..+.-|+ ..|++|+|||.-..|++
T Consensus 190 ~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~-nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 190 FKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKD-NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred hhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccC-ceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 221 2445688999999988888888 7888888877653211 11222232 25789999999998999
Q ss_pred EEeeCccccCCCc--eeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCc
Q 036953 241 TAEVNDLDSSDSS--MTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPF 295 (792)
Q Consensus 241 S~s~~dLrs~d~~--~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~ 295 (792)
.+++..+..||.- .++.+.. ..+.+..+.....+|.......+.-..+||++
T Consensus 269 aGsDGtf~FWDkdar~kLk~s~---~~~qpItcc~fn~~G~ifaYA~gYDWSkGhe~ 322 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDARTKLKTSE---THPQPITCCSFNRNGSIFAYALGYDWSKGHEG 322 (347)
T ss_pred ecCCceEEEecchhhhhhhccC---cCCCccceeEecCCCCEEEEEeeccccccccc
Confidence 9998877766654 4555433 33566777777788887777666666677765
No 130
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=4e-13 Score=141.99 Aligned_cols=151 Identities=18% Similarity=0.233 Sum_probs=123.9
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD 177 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~ 177 (792)
..|+.|++.|.+||+|..||.|.|||+.+...-+.|.+|..+|++++|++ ++++|+|++.|..|++||+..|.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 78999999999999999999999999999998889999999999999999 99999999999999999999998887776
Q ss_pred cCCCeeEEE-----------------------------------------------EcCCCcEEEEEc-CCeEEEEECCC
Q 036953 178 FYRPIASIA-----------------------------------------------FHAEGELLAVAS-GHKLYIWPYNN 209 (792)
Q Consensus 178 h~s~V~sVa-----------------------------------------------fSpdG~~LasgS-dd~V~IWDlrt 209 (792)
+.++|+.+. |++.|+++++|. .+++.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 655554433 455577788776 45588888888
Q ss_pred CCcccCCeEEecC-CCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 210 KEEASSPIIVLKT-RRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 210 ~~~~~~~~~~~~h-~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
.+... ...-. ...|.++.|+..|++++..+++.-||..+.
T Consensus 185 ~e~va---s~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 185 LECVA---SFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred heeee---eeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 76543 12222 367888999999999988888766665443
No 131
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=9.7e-13 Score=153.75 Aligned_cols=190 Identities=17% Similarity=0.221 Sum_probs=152.7
Q ss_pred ecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEe
Q 036953 58 CGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVL 133 (792)
Q Consensus 58 ~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L 133 (792)
.|....++......++++..++++..+...... +....-++.+++|+.+|+.++.|+.|-.|++-++.+......+
T Consensus 55 ~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~l 134 (933)
T KOG1274|consen 55 SGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVL 134 (933)
T ss_pred cCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheee
Confidence 344445555566688999999999999886553 3455677999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------cCCCeeEEEEcCCC-cEEEEEcCCeEE
Q 036953 134 SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD---------FYRPIASIAFHAEG-ELLAVASGHKLY 203 (792)
Q Consensus 134 ~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~---------h~s~V~sVafSpdG-~~LasgSdd~V~ 203 (792)
.+|.++|.++.|+| ++++||+.+-||+|++||+.++.+..++. ....+..++|+|+| ++++.+.++.|+
T Consensus 135 rgh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVK 213 (933)
T ss_pred cccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEE
Confidence 99999999999999 99999999999999999999987776652 13456789999995 555556688899
Q ss_pred EEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcccc
Q 036953 204 IWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDS 249 (792)
Q Consensus 204 IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs 249 (792)
+|+....+... .+....+...+..+.|+|.|+||+++.-++.|-.
T Consensus 214 vy~r~~we~~f-~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~v 258 (933)
T KOG1274|consen 214 VYSRKGWELQF-KLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILV 258 (933)
T ss_pred EEccCCceehe-eecccccccceEEEEEcCCCcEEeeeccCCcEEE
Confidence 99998887543 2222334455999999999999988876544333
No 132
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=6.6e-13 Score=140.51 Aligned_cols=173 Identities=18% Similarity=0.228 Sum_probs=136.5
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCCcCCCCC----CeEEEEEcCCCCEEEEEECCCeEEEEECC---CC-----cEEEEec
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCPLVPPPR----STIAAAFSPDGRTLASTHGDHTVKIIDCQ---TG-----NCLKVLS 134 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~----~V~sLafSPDG~~LaSGS~DGtVrIWDl~---tg-----k~v~~L~ 134 (792)
++...|++++.|..|.+|+.+ +++.+|-+ .-+..+.||+|+++++++.--.|++|..- .| +.+..++
T Consensus 197 ~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 197 GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred CCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence 456678999999999999998 55544433 35678899999999999998889999863 22 2456788
Q ss_pred CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-------cEEEEe-----ccCCCeeEEEEcCCCcEEEEEcCCeE
Q 036953 135 GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-------ECIGSC-----DFYRPIASIAFHAEGELLAVASGHKL 202 (792)
Q Consensus 135 gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-------~~v~t~-----~h~s~V~sVafSpdG~~LasgSdd~V 202 (792)
||+..|..++|++ +...++|.+.||++++||..-. +.++.. ...+....+..+|.|+.|+.+....|
T Consensus 276 GH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l 354 (420)
T KOG2096|consen 276 GHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDL 354 (420)
T ss_pred cchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCce
Confidence 9999999999999 9999999999999999998632 222222 12334458999999999999988789
Q ss_pred EEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 203 YIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 203 ~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
++|..++++... .....|...|.++.|+++|+++++++.
T Consensus 355 ~~~~se~g~~~~--~~e~~h~~~Is~is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 355 KVFASEDGKDYP--ELEDIHSTTISSISYSSDGKYIATCGD 393 (420)
T ss_pred EEEEcccCccch--hHHHhhcCceeeEEecCCCcEEeeecc
Confidence 999999876532 334458899999999999996665553
No 133
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.7e-13 Score=163.16 Aligned_cols=198 Identities=17% Similarity=0.193 Sum_probs=149.6
Q ss_pred ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC---C-------CcCCCCCCeEEEEEcC-CCCEE
Q 036953 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY---C-------PLVPPPRSTIAAAFSP-DGRTL 110 (792)
Q Consensus 42 k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t---~-------~L~gH~~~V~sLafSP-DG~~L 110 (792)
.+.++++|.+.+.. ..+.|+.+.+||.|.+|+... + ++..|.+.|..+.|++ .++.|
T Consensus 65 ~rF~kL~W~~~g~~------------~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlL 132 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSH------------SHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLL 132 (1049)
T ss_pred ccceeeeecccCCC------------ccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCcee
Confidence 37888999888652 113566667899999998754 1 4578999999999999 66699
Q ss_pred EEEECCCeEEEEECCCCcEEEEe--cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC---CCeeEE
Q 036953 111 ASTHGDHTVKIIDCQTGNCLKVL--SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY---RPIASI 185 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~v~~L--~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~---s~V~sV 185 (792)
|+|+.||.|.|||++.-+.-..+ ..-...|.+++|+.+..++|++++.++++.+||++..+++..+... ..+..+
T Consensus 133 ASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l 212 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVL 212 (1049)
T ss_pred eccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeee
Confidence 99999999999999864433333 1245689999999878889999999999999999999888777432 347899
Q ss_pred EEcCCC-cEEEEEc-CCe---EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeE-EEEEeeCccccCCCc
Q 036953 186 AFHAEG-ELLAVAS-GHK---LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPF-VLTAEVNDLDSSDSS 253 (792)
Q Consensus 186 afSpdG-~~LasgS-dd~---V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~L-laS~s~~dLrs~d~~ 253 (792)
.|||+. ..|++++ ++. |.+||+|...... .....|...|.++.|++.+..+ ++++.+.++-.|+..
T Consensus 213 ~WhP~~aTql~~As~dd~~PviqlWDlR~assP~--k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 213 AWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL--KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN 284 (1049)
T ss_pred eeCCCCceeeeeecCCCCCceeEeecccccCCch--hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence 999998 4566665 443 9999998776432 2335799999999999988545 455556666555443
No 134
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.47 E-value=6.9e-13 Score=151.20 Aligned_cols=168 Identities=21% Similarity=0.226 Sum_probs=140.0
Q ss_pred CcEEEEEeCCCeEEEEeccCC--CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 036953 69 KRGLVSWVEAESLRHLSAKYC--PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH 146 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~--~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafS 146 (792)
+..+++++.|.++++|..... .+.+|...|.++++-|++ .++||+.|++|++|.- ++.+++|.+|...|+++++-
T Consensus 112 ~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl 188 (745)
T KOG0301|consen 112 DGTLISGSWDSTAKVWRIGELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVL 188 (745)
T ss_pred cCceEecccccceEEecchhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEe
Confidence 445899999999999987644 588999999999999877 8999999999999985 78899999999999999998
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC-C
Q 036953 147 PLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT-R 223 (792)
Q Consensus 147 P~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h-~ 223 (792)
+ +..++||+.||.|++||+ +++++..+ +|.+.+.+++...++..+++++ |++++||+.. ++. ....+ .
T Consensus 189 ~--~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~----q~I~lPt 259 (745)
T KOG0301|consen 189 D--DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECV----QVITLPT 259 (745)
T ss_pred c--CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceE----EEEecCc
Confidence 7 557999999999999999 66666665 7999999999777777888877 5569999986 222 23333 4
Q ss_pred CCeEEEEEccCCCeEEEEEeeCcccc
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLDS 249 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLrs 249 (792)
..|+++++-++|+ +++++++.-++.
T Consensus 260 tsiWsa~~L~NgD-Ivvg~SDG~VrV 284 (745)
T KOG0301|consen 260 TSIWSAKVLLNGD-IVVGGSDGRVRV 284 (745)
T ss_pred cceEEEEEeeCCC-EEEeccCceEEE
Confidence 4899999999999 788888776664
No 135
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=3.7e-12 Score=149.00 Aligned_cols=213 Identities=11% Similarity=0.093 Sum_probs=164.3
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG-NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg-k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
..|..+-+.++|.|+|++|++++.||.|++|+.... +.-..+.-+...|.+++.. ..+|++|+.+++|.+|....+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY---SNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec---ccceEEeeccceEEEeeCCCC
Confidence 468889999999999999999999999999998765 3223333388888888875 469999999999999999988
Q ss_pred cEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 171 ECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 171 ~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
+.-..+ .+.-+++.++|+-+|++++.|+++. |++.++...... ....+|..+|.+|.|+|.+++|+++..+..+.
T Consensus 87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~---~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE---KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQ 163 (933)
T ss_pred CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh---eeecccCCceeeeeEcCCCCEEEEEecCceEE
Confidence 766555 5778999999999999999999887 999999887754 36788999999999999999888877755554
Q ss_pred cCCCc-----eee-----------ecCCCcccCCCCceEEEEecCCCEEEEeecc-------CcccCCCceEEEeEECCC
Q 036953 249 SSDSS-----MTR-----------ATSPGYLRYPPPAVFVANAQSGDHVSLAAEL-------PLMSSLPFLIVPSVSIDD 305 (792)
Q Consensus 249 s~d~~-----~~l-----------~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l-------~~l~gh~~~VwdV~~SpD 305 (792)
.|+.. ..+ ........|.+....+++...++++.+.... -..+.+...+.++.|||+
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 43321 111 1112245677776667777777787776611 122334555999999999
Q ss_pred CcEEE
Q 036953 306 SRIDL 310 (792)
Q Consensus 306 Gr~lv 310 (792)
|+||+
T Consensus 244 G~YiA 248 (933)
T KOG1274|consen 244 GKYIA 248 (933)
T ss_pred CcEEe
Confidence 99999
No 136
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.43 E-value=2.7e-12 Score=138.94 Aligned_cols=178 Identities=20% Similarity=0.256 Sum_probs=143.3
Q ss_pred CCcEEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSG 135 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~g 135 (792)
.+..|.++++|.++.+|++..+ .|.+|.+.|--++|+| -.+.|++++.|.+|.|||+.+|+.+..+.
T Consensus 93 nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~- 171 (472)
T KOG0303|consen 93 NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD- 171 (472)
T ss_pred CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-
Confidence 3556778889999999988533 4679999999999999 66789999999999999999999888887
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccC-CCeeEEEEcCCCcEEEEEc----CCeEEEEECCC
Q 036953 136 HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFY-RPIASIAFHAEGELLAVAS----GHKLYIWPYNN 209 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~-s~V~sVafSpdG~~LasgS----dd~V~IWDlrt 209 (792)
|...|+++.|+- |+.+|+|.+.|+.||+||.++++.+..- .|. .....+.|-.+|+++.+|- +..+-+||-..
T Consensus 172 hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 172 HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence 999999999999 9999999999999999999999998876 344 3456778888999666664 23399999887
Q ss_pred CCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-eCccc
Q 036953 210 KEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-VNDLD 248 (792)
Q Consensus 210 ~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-~~dLr 248 (792)
.++.. ....+.....|.---|.+|...+.++++ +..|+
T Consensus 251 l~eP~-~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 251 LEEPI-ALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred ccCcc-eeEEeccCCceEEeeecCCCCEEEEEecCCcceE
Confidence 76542 3344556677877788998887766665 33443
No 137
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=8.2e-12 Score=132.19 Aligned_cols=182 Identities=19% Similarity=0.311 Sum_probs=137.0
Q ss_pred eeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeE
Q 036953 44 VPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTV 119 (792)
Q Consensus 44 V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtV 119 (792)
..+..|++.|.+++.| ..++.+.+||..+. .+.+|..+|++++||+||++|+++|.|..|
T Consensus 26 a~~~~Fs~~G~~lAvG----------------c~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVG----------------CANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceEEeccCcceeeee----------------ccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence 5667777776666555 56778888888765 467999999999999999999999999999
Q ss_pred EEEECCCCcEEEEecCCCCCcEEEEEccC----------------------------------------------CCCEE
Q 036953 120 KIIDCQTGNCLKVLSGHRRTPWVVRFHPL----------------------------------------------RSEIL 153 (792)
Q Consensus 120 rIWDl~tgk~v~~L~gH~~~VtsVafSP~----------------------------------------------dg~lL 153 (792)
++||+..|.+++.+. ...+|+.+.|+|. .++++
T Consensus 90 ~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred EEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEE
Confidence 999999888776554 2233333333331 46889
Q ss_pred EEEeCCCeEEEEECCCCcEEEEeccC--CCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCC------cccCCeEEe---c
Q 036953 154 ASGSLDHEVRLWDANTSECIGSCDFY--RPIASIAFHAEGELLAVASGHK-LYIWPYNNKE------EASSPIIVL---K 221 (792)
Q Consensus 154 aSgS~DgtVrLWDl~tg~~v~t~~h~--s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~------~~~~~~~~~---~ 221 (792)
++|...|.+.++|..+.+++..+... ..|..+.++..|+.|+.-+.++ |+.|+++.-. +.. +.... -
T Consensus 169 itGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e-~~~K~qDvV 247 (405)
T KOG1273|consen 169 ITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE-PEHKLQDVV 247 (405)
T ss_pred EEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC-hhHHHHHHH
Confidence 99999999999999999999988633 6899999999999999988665 9999986221 111 11111 1
Q ss_pred CCCCeEEEEEccCCCeEEEEEe
Q 036953 222 TRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 222 h~~sVtsVafSPdG~~LlaS~s 243 (792)
.+-.-.+++|+.+|.++++++.
T Consensus 248 Nk~~Wk~ccfs~dgeYv~a~s~ 269 (405)
T KOG1273|consen 248 NKLQWKKCCFSGDGEYVCAGSA 269 (405)
T ss_pred hhhhhhheeecCCccEEEeccc
Confidence 3445678999999998887664
No 138
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.43 E-value=2.3e-12 Score=145.72 Aligned_cols=245 Identities=16% Similarity=0.196 Sum_probs=165.7
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCe
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHT 118 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGt 118 (792)
.+..+++-|+|..+ ++ ..+..+.++|...+ ++++|.+.|+|++|+.||+++++|+.|+.
T Consensus 14 ci~d~afkPDGsqL---------------~l--AAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~ 76 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQL---------------IL--AAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKS 76 (1081)
T ss_pred chheeEECCCCceE---------------EE--ecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCcee
Confidence 56667777776532 11 12344566666544 67899999999999999999999999999
Q ss_pred EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc
Q 036953 119 VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 119 VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS 198 (792)
|.||+-.-.. +..+ .|...|.|+.|+| -.+.|+||+.. ..-+|....+ .+........+.+++|..||++|+.|-
T Consensus 77 VI~W~~klEG-~LkY-SH~D~IQCMsFNP-~~h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~ 151 (1081)
T KOG1538|consen 77 VIIWTSKLEG-ILKY-SHNDAIQCMSFNP-ITHQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGM 151 (1081)
T ss_pred EEEecccccc-eeee-ccCCeeeEeecCc-hHHHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEec
Confidence 9999854322 2223 5999999999999 88899999865 4678877653 333344567899999999999999998
Q ss_pred -CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe---EEEEEeeCcc--c--cCCCc-----eeeecCCCcccC
Q 036953 199 -GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP---FVLTAEVNDL--D--SSDSS-----MTRATSPGYLRY 265 (792)
Q Consensus 199 -dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~---LlaS~s~~dL--r--s~d~~-----~~l~t~sg~~~~ 265 (792)
+++|.|-+-...+... .....+..++|.+++|+|.... =+.+.-+|.- . +.+.. ..+...+-+..|
T Consensus 152 ~nGTIsiRNk~gEek~~-I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisY 230 (1081)
T KOG1538|consen 152 FNGTISIRNKNGEEKVK-IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISY 230 (1081)
T ss_pred cCceEEeecCCCCcceE-EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhhee
Confidence 5668887654333222 1112235789999999996431 1111112211 1 11111 112222335556
Q ss_pred CCCceEEEEecCCCEEEEee----ccCcccCCCceEEEeEECCCCcEEE
Q 036953 266 PPPAVFVANAQSGDHVSLAA----ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 266 p~~~~~l~~~ssG~~~~l~s----~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.++..++..+.+++..+++. -+.++.....+||.|...|+|++++
T Consensus 231 f~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 231 FTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred ccCCcEEEEccCCCceEEEeecCeEEeeccccceeEEEEEEccCCceEE
Confidence 66777777777777777776 3345566778999999999999998
No 139
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.43 E-value=2.5e-11 Score=140.96 Aligned_cols=288 Identities=12% Similarity=0.073 Sum_probs=184.0
Q ss_pred CCCceEeeecccceeeCCCC---ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc---CCC-
Q 036953 22 RRRARNVSRLLAHREISPKT---KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL---VPP- 94 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels~~t---k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L---~gH- 94 (792)
..+-.++|+....+.+.... ..+++..=+|-..+++.| ..+++|.+++++..+. ..|
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG----------------~~~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIG----------------LENGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEe----------------ccCceEEEEEcccCcEEEEEEcc
Confidence 45556778777777666322 344555444444444444 4556666666655431 124
Q ss_pred CCCeEEEEEcCCCCE-EEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC--C
Q 036953 95 PRSTIAAAFSPDGRT-LASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT--S 170 (792)
Q Consensus 95 ~~~V~sLafSPDG~~-LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t--g 170 (792)
.+.|+.++|.-||.. +++|+..|.+.+||++..+....+. .|.+.|....|-| ....+++.+.|+.+++|=..+ |
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~vfD~~dg 322 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVWVFDSGDG 322 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecC-CCceEeeccCCCceeEEEeeCCCC
Confidence 378999999999985 5666677999999998777666555 6777777777777 667777777777766662110 0
Q ss_pred ----------------------------------------------------c---------------------EE----
Q 036953 171 ----------------------------------------------------E---------------------CI---- 173 (792)
Q Consensus 171 ----------------------------------------------------~---------------------~v---- 173 (792)
+ ++
T Consensus 323 ~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa 402 (910)
T KOG1539|consen 323 VPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFA 402 (910)
T ss_pred cchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeee
Confidence 0 00
Q ss_pred ----------------------------------EEeccC------CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCc
Q 036953 174 ----------------------------------GSCDFY------RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEE 212 (792)
Q Consensus 174 ----------------------------------~t~~h~------s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~ 212 (792)
..+.+. ..+.+++.++.|++.+.|+ .+.|-+|+++++-.
T Consensus 403 ~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~ 482 (910)
T KOG1539|consen 403 FENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH 482 (910)
T ss_pred cccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee
Confidence 000011 2356788888899888887 45599999988865
Q ss_pred ccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceee-------ecCCCcccCCCCceEEEEecCCCEEEEee
Q 036953 213 ASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTR-------ATSPGYLRYPPPAVFVANAQSGDHVSLAA 285 (792)
Q Consensus 213 ~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l-------~t~sg~~~~p~~~~~l~~~ssG~~~~l~s 285 (792)
.........|..+|+.++..-.++.+++++.+..+..|+..... .......-+......++.+.++-.+.+..
T Consensus 483 r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD 562 (910)
T KOG1539|consen 483 RKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVD 562 (910)
T ss_pred ecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEE
Confidence 43122234689999999999888888888887777766654322 11111111111122222222222233222
Q ss_pred -----ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 286 -----ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 286 -----~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
-.+-+.||..+|.+.+||||||+|+ +++-|.||.-||+-.+
T Consensus 563 ~~t~kvvR~f~gh~nritd~~FS~DgrWli--------------------------sasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 563 VVTRKVVREFWGHGNRITDMTFSPDGRWLI--------------------------SASMDSTIRTWDLPTG 608 (910)
T ss_pred chhhhhhHHhhccccceeeeEeCCCCcEEE--------------------------EeecCCcEEEEeccCc
Confidence 1234678999999999999999999 8899999999998776
No 140
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.43 E-value=4.6e-12 Score=146.83 Aligned_cols=222 Identities=14% Similarity=0.144 Sum_probs=178.6
Q ss_pred CCcEEEEEeCCCeEEEEeccCCCc----------CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEe---c
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCPL----------VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVL---S 134 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~L----------~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L---~ 134 (792)
+...+.....+..++.|+.+...+ +.-...+++++.++.|++.+.|...|.|-+||+++|-....| +
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred hcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCc
Confidence 344444555667788888865533 233467899999999999999999999999999999888888 5
Q ss_pred CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcc
Q 036953 135 GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEA 213 (792)
Q Consensus 135 gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~ 213 (792)
.|.++|++++... -++.+++++.+|.++.||.+++..+..+.....+..+.++.....++.+.++- |.++|..+.+..
T Consensus 491 ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv 569 (910)
T KOG1539|consen 491 AHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV 569 (910)
T ss_pred cccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence 8999999999987 77899999999999999999999999999999999999999999999988766 999999888755
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCce-------eeecCCCcccCCCCceEEEEecCC-CEEEEee
Q 036953 214 SSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSM-------TRATSPGYLRYPPPAVFVANAQSG-DHVSLAA 285 (792)
Q Consensus 214 ~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~-------~l~t~sg~~~~p~~~~~l~~~ssG-~~~~l~s 285 (792)
+ .+.+|.+.|++++|||||+.+++++-+..|+.||-.. .+....-...+.|..-+++..+.+ .-+.+++
T Consensus 570 R---~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 570 R---EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred H---HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 4 5667999999999999999999999888888877552 122222345566667777777666 4477777
Q ss_pred ccCcccCC
Q 036953 286 ELPLMSSL 293 (792)
Q Consensus 286 ~l~~l~gh 293 (792)
....++.+
T Consensus 647 NkslF~~v 654 (910)
T KOG1539|consen 647 NKSLFKSV 654 (910)
T ss_pred chhHheec
Confidence 66666544
No 141
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.42 E-value=2.3e-12 Score=135.21 Aligned_cols=199 Identities=17% Similarity=0.151 Sum_probs=142.0
Q ss_pred ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC-CCeEEEEe-ccCCCcCCCCCCeEEEEEcC-CCCEEEEEECCCe
Q 036953 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE-AESLRHLS-AKYCPLVPPPRSTIAAAFSP-DGRTLASTHGDHT 118 (792)
Q Consensus 42 k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~-d~sIrvWd-~~t~~L~gH~~~V~sLafSP-DG~~LaSGS~DGt 118 (792)
..++++-|.|+.+-.-. ...+..+.-.++|..+. +..++.-. ...++-..+..++++..|+. |.++|.+++-|.+
T Consensus 97 YP~tK~~wiPd~~g~~p--dlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 97 YPVTKLMWIPDSKGVYP--DLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred CCccceEecCCccccCc--chhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe
Confidence 46889999999641100 11111122334444432 11111111 11223345677899999998 8899999999999
Q ss_pred EEEEECCCCc---EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cc-CCCeeEEEEcCCC
Q 036953 119 VKIIDCQTGN---CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC---DF-YRPIASIAFHAEG 191 (792)
Q Consensus 119 VrIWDl~tgk---~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~---~h-~s~V~sVafSpdG 191 (792)
+.|||+.++. ....+-+|...|..++|....-+.+++++.||.||++|++..+.-..+ .. ..+...++|+++.
T Consensus 175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD 254 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD 254 (364)
T ss_pred EEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence 9999999863 355677899999999999856789999999999999999986544433 22 5678899999876
Q ss_pred -cEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 192 -ELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 192 -~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
+++|+-. ..+|.|.|++...... ..+..|...|+.++|.|.....++++++
T Consensus 255 pnymATf~~dS~~V~iLDiR~P~tpv--a~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 255 PNYMATFAMDSNKVVILDIRVPCTPV--ARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred chHHhhhhcCCceEEEEEecCCCcce--ehhhcCcccccceEecCCCCceeeecCC
Confidence 5666654 3449999999887542 4566799999999999999888888873
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.41 E-value=3.3e-12 Score=135.84 Aligned_cols=182 Identities=23% Similarity=0.324 Sum_probs=139.6
Q ss_pred CcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEec---CCCCCc
Q 036953 69 KRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLS---GHRRTP 140 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~---gH~~~V 140 (792)
.-.++.++.-+.|++.|..+. .+.+|...|+.+.|.| +.++++++|.|..|++||+++..++..|- +|.+.|
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEV 184 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcE
Confidence 445666677889999998765 4678999999999999 56899999999999999999999998885 699999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcE------E-------------------EEe----ccCC-----------
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDANTSEC------I-------------------GSC----DFYR----------- 180 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~------v-------------------~t~----~h~s----------- 180 (792)
.++.|+. +++++++|+.|.++++|++...+. . ..| -|..
T Consensus 185 LSvD~~~-~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ 263 (385)
T KOG1034|consen 185 LSVDFSL-DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDF 263 (385)
T ss_pred EEEEEcC-CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhh
Confidence 9999999 999999999999999999973210 0 000 0000
Q ss_pred -------------------------------------------C--eeEEEEcCCCcEEEEEc-CCeEEEEECCCCCccc
Q 036953 181 -------------------------------------------P--IASIAFHAEGELLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 181 -------------------------------------------~--V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
. ....+|++-++.||.+. .++|++||++..+...
T Consensus 264 ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~ 343 (385)
T KOG1034|consen 264 ILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPK 343 (385)
T ss_pred eeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCcc
Confidence 0 11234556677888888 4569999998877643
Q ss_pred CCeE-EecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 215 SPII-VLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 215 ~~~~-~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
.... .......|...+|+.|+..|++.+.+..++-|+
T Consensus 344 ~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 344 CTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred CceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 2222 223467899999999999999998877666554
No 143
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.41 E-value=3.2e-11 Score=133.41 Aligned_cols=181 Identities=15% Similarity=0.181 Sum_probs=147.0
Q ss_pred cEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCC-CCCcEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH-RRTPWVVR 144 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH-~~~VtsVa 144 (792)
..+++++..+++++||.+.. .+++|...|+++.++....+||+++..|.|.|..+.++.....|.-- ...|.-+.
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLR 171 (673)
T ss_pred eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEee
Confidence 46778889999999999844 57899999999999999999999999999999999998877777633 34567899
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--ccCCCeeEEEEcCCCcE-EEEEc-CCeEEEEECCCCCcccCCeEEe
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSC--DFYRPIASIAFHAEGEL-LAVAS-GHKLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~--~h~s~V~sVafSpdG~~-LasgS-dd~V~IWDlrt~~~~~~~~~~~ 220 (792)
|++....+|.+++.+|.|.+||+....++..+ .|..+...|+|+|.... |++.+ |.+|++||.+...... ..
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~----~l 247 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD----RL 247 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc----ee
Confidence 99966777889999999999999998888777 48999999999998864 44445 6669999998766433 33
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe-----eCccccCCCce
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAE-----VNDLDSSDSSM 254 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s-----~~dLrs~d~~~ 254 (792)
....+...|+|.++|.+|+++.+ .||+|.....+
T Consensus 248 ~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 248 TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCc
Confidence 44667899999999998888776 45555544443
No 144
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.40 E-value=7.1e-12 Score=131.46 Aligned_cols=193 Identities=17% Similarity=0.170 Sum_probs=140.9
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcC--CCCEEEEEECCCeEE
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSP--DGRTLASTHGDHTVK 120 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSP--DG~~LaSGS~DGtVr 120 (792)
.+.++.|.|++..+++- .+....+|+..+..++ +-.+....-.+|....++-+|+| |++.+++.+ |+++.
T Consensus 125 ~i~cvew~Pns~klasm------~dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~ 196 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASM------DDNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQ 196 (370)
T ss_pred ceeeEEEcCCCCeeEEe------ccCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEEEeC-CCcEE
Confidence 67899999988766554 2444445554444432 22222112234677788999999 899888755 78999
Q ss_pred EEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEEe-ccCCCeeEEEEcCCC-cEEEE
Q 036953 121 IIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-SECIGSC-DFYRPIASIAFHAEG-ELLAV 196 (792)
Q Consensus 121 IWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~v~t~-~h~s~V~sVafSpdG-~~Las 196 (792)
.||+++.++...+. +|...|..+.|+|+...+|+||+.|+.|++||.+. ..++..+ +|..+++++.|+|.. ++|++
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEe
Confidence 99999988777765 68889999999997888999999999999999986 4577777 589999999999975 45566
Q ss_pred Ec-CCeEEEEECCCCC---------------------ccc-----CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 197 AS-GHKLYIWPYNNKE---------------------EAS-----SPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 197 gS-dd~V~IWDlrt~~---------------------~~~-----~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
++ |.+|.+|....-. ..+ .......|.+.|++++|+.-...++++-+
T Consensus 277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec
Confidence 66 4558888664321 000 01133458899999999999998887774
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=4.7e-11 Score=131.54 Aligned_cols=214 Identities=13% Similarity=0.143 Sum_probs=140.4
Q ss_pred EEEEEeCCCeEEEEeccCCCc------CCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 71 GLVSWVEAESLRHLSAKYCPL------VPPP-RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L------~gH~-~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
.+++.+..+-+..||+.+.++ .++. ..+....+++++++|+..+..|.|.|.-..+++.+..++ -.+.|..+
T Consensus 272 ~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 272 VIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred EEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 344444444555666554422 2232 245566666666666666666666666666666666665 46778999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCe--eEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccC--Ce-
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPI--ASIAFHAEGELLAVASGHK-LYIWPYNNKEEASS--PI- 217 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V--~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~--~~- 217 (792)
+|+. +++.|+.++.+|.|.+||++...++..+...+.| ++++.++++.+||+|++.+ |.|||.++...... |.
T Consensus 351 ~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik 429 (514)
T KOG2055|consen 351 TFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIK 429 (514)
T ss_pred EEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchh
Confidence 9998 8899999999999999999999999999665555 5677779999999999766 99999765432221 21
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceE
Q 036953 218 IVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLI 297 (792)
Q Consensus 218 ~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~V 297 (792)
.+..-...|+++.|++|.+.|+.++... ...-..+.+.....+.+||. .....+.|
T Consensus 430 ~~dNLtt~Itsl~Fn~d~qiLAiaS~~~--knalrLVHvPS~TVFsNfP~----------------------~n~~vg~v 485 (514)
T KOG2055|consen 430 TVDNLTTAITSLQFNHDAQILAIASRVK--KNALRLVHVPSCTVFSNFPT----------------------SNTKVGHV 485 (514)
T ss_pred hhhhhheeeeeeeeCcchhhhhhhhhcc--ccceEEEeccceeeeccCCC----------------------CCCcccce
Confidence 2233467899999999999665544311 00001112222223333332 22356678
Q ss_pred EEeEECCCCcEEE
Q 036953 298 VPSVSIDDSRIDL 310 (792)
Q Consensus 298 wdV~~SpDGr~lv 310 (792)
.+++|||.|-+++
T Consensus 486 tc~aFSP~sG~lA 498 (514)
T KOG2055|consen 486 TCMAFSPNSGYLA 498 (514)
T ss_pred EEEEecCCCceEE
Confidence 8999999988887
No 146
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.40 E-value=8.8e-12 Score=135.51 Aligned_cols=172 Identities=25% Similarity=0.313 Sum_probs=134.8
Q ss_pred EEEEEeCCCeEEEEeccCC-------------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC--------C---
Q 036953 71 GLVSWVEAESLRHLSAKYC-------------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ--------T--- 126 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~-------------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~--------t--- 126 (792)
++.++..|..|++|..... .|..|...|+++.|+|+|..|++|+.+|.|.+|... +
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 6777788888888876432 367899999999999999999999999999999765 2
Q ss_pred -----CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCC
Q 036953 127 -----GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGH 200 (792)
Q Consensus 127 -----gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd 200 (792)
....+++.+|...|..++|+| ++.++++++.|+.+++||+..|+....+ +|...+..++|.|-++++++-+.+
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred hCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccC
Confidence 123456778999999999999 9999999999999999999999999888 599999999999999999987744
Q ss_pred e-EEEEECCCCCcccCC----------------eEEecCC----CCeEEEEEccCCCeEEEEEe
Q 036953 201 K-LYIWPYNNKEEASSP----------------IIVLKTR----RSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 201 ~-V~IWDlrt~~~~~~~----------------~~~~~h~----~sVtsVafSPdG~~LlaS~s 243 (792)
. .+.++++..+..... ...+.|. .-...++|+|+|..+++-++
T Consensus 187 r~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag 250 (434)
T KOG1009|consen 187 RHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAG 250 (434)
T ss_pred cccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccc
Confidence 4 666665544322100 0111122 23467899999997776554
No 147
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.38 E-value=5.3e-12 Score=142.28 Aligned_cols=166 Identities=17% Similarity=0.215 Sum_probs=131.8
Q ss_pred eCCCeEEEEeccCC-Cc-----C--CCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-------cEEEEecCCCCC
Q 036953 76 VEAESLRHLSAKYC-PL-----V--PPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG-------NCLKVLSGHRRT 139 (792)
Q Consensus 76 s~d~sIrvWd~~t~-~L-----~--gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg-------k~v~~L~gH~~~ 139 (792)
+..+.|-+++...- +| . -....|+.++|+| |..+|++++.||.|+||.+..+ .....+.+|...
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 45788888887632 22 1 2345699999999 9999999999999999998654 345778899999
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCe
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPI 217 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~ 217 (792)
|+.++|||.-.+.|++++.|.+|++||+++++.-..+ +|.+.|.+++|+|+|+.+++.+ |++|++|+-++.+...
T Consensus 680 I~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv--- 756 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV--- 756 (1012)
T ss_pred EEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc---
Confidence 9999999988889999999999999999998766665 6999999999999999999988 6679999998876432
Q ss_pred EEec--CCCCeEEEEEccCCCeEEEEEee
Q 036953 218 IVLK--TRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 218 ~~~~--h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
.... -...--.+.|.-+|+++++++-+
T Consensus 757 ~Eg~gpvgtRgARi~wacdgr~viv~Gfd 785 (1012)
T KOG1445|consen 757 YEGKGPVGTRGARILWACDGRIVIVVGFD 785 (1012)
T ss_pred ccCCCCccCcceeEEEEecCcEEEEeccc
Confidence 1111 11223467788899988877743
No 148
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.38 E-value=2.3e-11 Score=138.74 Aligned_cols=242 Identities=16% Similarity=0.229 Sum_probs=178.3
Q ss_pred CcEEEEEeCCCeEEEEeccCCC-----------------------------------------cCCCCCCeEEEEEcCCC
Q 036953 69 KRGLVSWVEAESLRHLSAKYCP-----------------------------------------LVPPPRSTIAAAFSPDG 107 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~-----------------------------------------L~gH~~~V~sLafSPDG 107 (792)
...+.+++.|++||+|+...+. +-+..-++.+++.+|+|
T Consensus 392 ~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g 471 (1080)
T KOG1408|consen 392 RGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG 471 (1080)
T ss_pred ccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc
Confidence 4458899999999999985320 01234568999999999
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEcc--CCCCEEEEEeCCCeEEEEECCCC-cEEEEe-ccCCCee
Q 036953 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP--LRSEILASGSLDHEVRLWDANTS-ECIGSC-DFYRPIA 183 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP--~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~-~h~s~V~ 183 (792)
++|++|..-|+++|||+..-+.+..+.+|...|.|+.|+. ...++|++++.|.-|++||+... .++.++ +|.+.|+
T Consensus 472 qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 472 QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhccccccee
Confidence 9999999999999999999888888999999999999985 23578999999999999999764 455566 5899999
Q ss_pred EEEEcCCC--cEEEEEcCCeEEEEECCCCCcccCC---eEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC-----c
Q 036953 184 SIAFHAEG--ELLAVASGHKLYIWPYNNKEEASSP---IIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS-----S 253 (792)
Q Consensus 184 sVafSpdG--~~LasgSdd~V~IWDlrt~~~~~~~---~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~-----~ 253 (792)
++.|--.| ..+++++.++..+|+.......... ....-....++.++..|+.+++++.|.+.+|+..+. .
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 99998877 6777888777666766542211100 011113567999999999999999999888775442 2
Q ss_pred eeeecCCCc------ccCCCCceEEEEecCCCEEEEee-----ccCcccCCCceEEEeEECCCCcEEE
Q 036953 254 MTRATSPGY------LRYPPPAVFVANAQSGDHVSLAA-----ELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 254 ~~l~t~sg~------~~~p~~~~~l~~~ssG~~~~l~s-----~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
...+...++ ....|..++++..-+++.+.+.. ....+-||.-.|.-+.|++|=+.|+
T Consensus 632 k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlI 699 (1080)
T KOG1408|consen 632 KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLI 699 (1080)
T ss_pred eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhhe
Confidence 233333322 22344556666655666655554 2235668999999999999999888
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.37 E-value=1.7e-11 Score=135.50 Aligned_cols=197 Identities=15% Similarity=0.196 Sum_probs=151.9
Q ss_pred CCCCceEeeecccceeeC---CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----cC-
Q 036953 21 LRRRARNVSRLLAHREIS---PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LV- 92 (792)
Q Consensus 21 ~~s~~r~V~~l~~~rels---~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~- 92 (792)
-..+.++||++..+.... -+...|+.+.+.-. +..|.+++.++.|.+....+++ +.
T Consensus 98 G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~----------------DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 98 GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT----------------DEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred CcCceeeehhhHHHHHhhhccCCcceeEEEEecCC----------------cceeEEeccCCcEEEEecccCccccceec
Confidence 367789999998664443 23334555544333 3455566666777777666552 22
Q ss_pred CCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEEEe-cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 93 PPPRSTIAAAFSPDGR-TLASTHGDHTVKIIDCQTGNCLKVL-SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 93 gH~~~V~sLafSPDG~-~LaSGS~DGtVrIWDl~tgk~v~~L-~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+....|.-+.|++..+ +|.+++.+|.|.+||+....++..+ +.|..+..+|+|+|.+..+|++.+.|+.|.+||.+..
T Consensus 162 ~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 2245577899999655 5567889999999999877665544 4799999999999988899999999999999999998
Q ss_pred cEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC
Q 036953 171 ECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 171 ~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG 235 (792)
+....+....+...++|.++|.+|+.|. .++|..||++..+... .....|...|++|+|-|.-
T Consensus 242 ~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv--~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 242 ASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPV--AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cccceeeecCCcceeeecCCceEEEeecCCceEEEEecccCCCCc--eEeeecccceeEEEeeecc
Confidence 8888888899999999999999999998 5669999999887542 4556688889999998865
No 150
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.36 E-value=5.7e-11 Score=135.79 Aligned_cols=255 Identities=14% Similarity=0.100 Sum_probs=179.3
Q ss_pred EEEEEeCCCeEEEEeccC-----------CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---cEEEEecCC
Q 036953 71 GLVSWVEAESLRHLSAKY-----------CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG---NCLKVLSGH 136 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t-----------~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg---k~v~~L~gH 136 (792)
.|.+.+.|+++.+|.... +.+.+...+.+...|+|+++.+++-+..|-.++|..... .....+.||
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH 360 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGH 360 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccc
Confidence 445555666666665543 344556677999999999999999999999999983322 234456799
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEEe----ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCC
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE-CIGSC----DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNK 210 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~v~t~----~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~ 210 (792)
.+.|++++|+| .+.+|++.+.|.|-|++-....+ .-..+ -|...++|++|-+....|++|.+.+ +++|+..+.
T Consensus 361 ~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~ 439 (764)
T KOG1063|consen 361 VDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKS 439 (764)
T ss_pred cccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHH
Confidence 99999999999 99999999999999998765222 22222 2777889999988666677777766 888865321
Q ss_pred C-------------------------------------------c------------------------------ccCCe
Q 036953 211 E-------------------------------------------E------------------------------ASSPI 217 (792)
Q Consensus 211 ~-------------------------------------------~------------------------------~~~~~ 217 (792)
- . ..+..
T Consensus 440 fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~ 519 (764)
T KOG1063|consen 440 FVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVH 519 (764)
T ss_pred HHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhH
Confidence 0 0 00011
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEe----------eCccccCCCceeeecCCC---cccCCCCceEEEEecCCCEEEEe
Q 036953 218 IVLKTRRSLRAVHFHPHAAPFVLTAE----------VNDLDSSDSSMTRATSPG---YLRYPPPAVFVANAQSGDHVSLA 284 (792)
Q Consensus 218 ~~~~h~~sVtsVafSPdG~~LlaS~s----------~~dLrs~d~~~~l~t~sg---~~~~p~~~~~l~~~ssG~~~~l~ 284 (792)
.+.+|...|++++.+|+++.++++|. +|+...|.....+...+- .+.|.+...++...+.+....+.
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEee
Confidence 13357788999999999997777776 555555544433333222 45666666666666666554544
Q ss_pred e---------ccCcccCCCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCccccccccccccCC
Q 036953 285 A---------ELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQDGTVPSMETFPV 352 (792)
Q Consensus 285 s---------~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~D~tv~p~~~~~~ 352 (792)
. .....+.|..-||+++++||+++++ |+|.|++|--|....+
T Consensus 600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~Fa--------------------------TaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFA--------------------------TASRDKKVKVWEEPDL 650 (764)
T ss_pred eeecccchhhhhccccccceEEEEcccCcccceeE--------------------------EecCCceEEEEeccCc
Confidence 4 1223678999999999999999999 9999999999986544
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.36 E-value=8.8e-12 Score=137.04 Aligned_cols=205 Identities=16% Similarity=0.154 Sum_probs=155.5
Q ss_pred CCCCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCC----cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEE
Q 036953 92 VPPPRSTIAAAFSPD--GRTLASTHGDHTVKIIDCQTG----NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLW 165 (792)
Q Consensus 92 ~gH~~~V~sLafSPD--G~~LaSGS~DGtVrIWDl~tg----k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLW 165 (792)
.-+.+.|++++|+|. -+.+++|+.-|+|-+||+.+. .-+..+..|..+|.++.|+|.+...+++.+.||+|++-
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 457888999999993 368899999999999999533 24677889999999999999888999999999999999
Q ss_pred ECCCCcEEEEec---cCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 166 DANTSECIGSCD---FYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 166 Dl~tg~~v~t~~---h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
|+++...-..+. ....+.++.|+.+...++.+.+ +.+.+||+++.+... ....-|...|+.|+++|...+++++
T Consensus 263 D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~--~~~~lh~kKI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 263 DFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEY--ENLRLHKKKITSVALNPVCPWFLAT 340 (498)
T ss_pred eecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccc--hhhhhhhcccceeecCCCCchheee
Confidence 999864333332 3456788899888877777764 359999999987643 2234466799999999999999998
Q ss_pred EeeC-ccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEccccccCCC
Q 036953 242 AEVN-DLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASRRASSS 320 (792)
Q Consensus 242 ~s~~-dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~~~~Sg 320 (792)
++.+ ..+.||.+......+ + .++.. .|.-.|-+++|||+|--|+
T Consensus 341 ~s~D~T~kIWD~R~l~~K~s-------p-----------~lst~-------~HrrsV~sAyFSPs~gtl~---------- 385 (498)
T KOG4328|consen 341 ASLDQTAKIWDLRQLRGKAS-------P-----------FLSTL-------PHRRSVNSAYFSPSGGTLL---------- 385 (498)
T ss_pred cccCcceeeeehhhhcCCCC-------c-----------ceecc-------cccceeeeeEEcCCCCceE----------
Confidence 8844 333555442221100 0 11111 2888999999999976688
Q ss_pred CccccccccccccCCCCCccccccccccc
Q 036953 321 NMQIEPSASLHLQSDSNVEQDGTVPSMET 349 (792)
Q Consensus 321 ~v~~~~s~~~q~~~~~sgs~D~tv~p~~~ 349 (792)
+-.+|.+|.-||.
T Consensus 386 ----------------TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 386 ----------------TTCQDNEIRVFDS 398 (498)
T ss_pred ----------------eeccCCceEEeec
Confidence 7889999999998
No 152
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=5.4e-11 Score=125.88 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=123.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
..+.|..+.|+|..+.|+.++.||.+++||+........|+ |..++.+++|.+ ...+++|+.|+.|+.+|+++++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC--CceEEEeccCceEEEEEecCCcce
Confidence 46789999999999999999999999999998886666665 999999999985 678999999999999999999888
Q ss_pred EEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe-----eCcc
Q 036953 174 GSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE-----VNDL 247 (792)
Q Consensus 174 ~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s-----~~dL 247 (792)
..-.|..++.++.+.+....+++|+ |.+|++||.+..... ........|+++... |+.|++++. .||+
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~----~~~d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV----GTFDQGKKVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc----cccccCceEEEEecc--CCEEEEeecCceEEEEEc
Confidence 7778999999999998888888888 778999999874422 233344588888765 677887666 6666
Q ss_pred ccCCC
Q 036953 248 DSSDS 252 (792)
Q Consensus 248 rs~d~ 252 (792)
+.-+.
T Consensus 163 Rn~~~ 167 (323)
T KOG1036|consen 163 RNLDE 167 (323)
T ss_pred ccccc
Confidence 64443
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.35 E-value=2.9e-11 Score=128.69 Aligned_cols=140 Identities=27% Similarity=0.433 Sum_probs=118.7
Q ss_pred cEEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcCCC----CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDG----RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSPDG----~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf 145 (792)
..++.+..|+-+++...... ..|....+.++|+-|. .+++.|+.-|.|+|.|+.++++...+.+|...|..+.|
T Consensus 66 vtiy~c~~d~~ir~lq~y~D--~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~ 143 (385)
T KOG1034|consen 66 VTIYECPGDGGIRLLQSYAD--EDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKF 143 (385)
T ss_pred EEEEEECCccceeeeeeccC--CCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhc
Confidence 34566666665555543322 2578888999998743 37888889999999999999999999999999999999
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCC
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSC----DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKE 211 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~----~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~ 211 (792)
+|.+.+++++++.|..||+||+++..|+..| +|.+.|.+++|+.+|.+|++++ |..|++|+++..+
T Consensus 144 ~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 144 HPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred CCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 9988899999999999999999999999998 3888999999999999999998 6669999998543
No 154
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1.5e-10 Score=132.27 Aligned_cols=177 Identities=15% Similarity=0.140 Sum_probs=135.2
Q ss_pred EEEEEeCCCeEEEEeccCC-----CcCCC-CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYC-----PLVPP-PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~-----~L~gH-~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
.|...-.++.|.+|+...+ .+.++ .+.|.+++|+ ++.+|.+.+.+|.|.-||+.+++....+..-.+.|++++
T Consensus 39 ~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsia 117 (691)
T KOG2048|consen 39 QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIA 117 (691)
T ss_pred ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEE
Confidence 3566678899999998754 23444 4569999999 677889999999999999999999999999999999999
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEe
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSC---DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~---~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~ 220 (792)
.+| .++.++.|++||.+..++...++..... ..++.+-+++|++++..|+.|+.|+ |++||..++..........
T Consensus 118 i~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~ 196 (691)
T KOG2048|consen 118 INP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQL 196 (691)
T ss_pred eCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecc
Confidence 999 8899999999998888888887765543 3568999999999999999999655 9999999887543111111
Q ss_pred c-----CCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 221 K-----TRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 221 ~-----h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
. ...-|.+|.|-.++. |+++.+-..+..|
T Consensus 197 d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FW 230 (691)
T KOG2048|consen 197 DRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFW 230 (691)
T ss_pred cccccCCceEEEEEEEeecCc-EEEecCCceEEEE
Confidence 1 122477888876665 4444433333333
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.34 E-value=2.8e-11 Score=132.84 Aligned_cols=179 Identities=15% Similarity=0.161 Sum_probs=138.1
Q ss_pred ecCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCc
Q 036953 66 RDAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP 140 (792)
Q Consensus 66 ~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V 140 (792)
+.....|++++.|+++++||+.+++ +.-|.+.|.++.|+| ....|++|+.|++|.|.|++...+....-.-.+.|
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V 332 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV 332 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccce
Confidence 4567789999999999999999873 556899999999999 78899999999999999998432221111234678
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEec-cCCCeeEEEEcCCCc-EEEEEcCCe-EEEEECCCCCcccCC
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSCD-FYRPIASIAFHAEGE-LLAVASGHK-LYIWPYNNKEEASSP 216 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~~-h~s~V~sVafSpdG~-~LasgSdd~-V~IWDlrt~~~~~~~ 216 (792)
-.+.|+|+....++++..||+|+-+|+|+. ++++++. |.+.|.+++++..-. ++++++.++ |++|++.........
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 889999988888999999999999999984 8999885 999999999998764 667777555 999999655432100
Q ss_pred eEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 217 IIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 217 ~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
...+ .-+...|.++.|+-.++++.++..
T Consensus 413 ~~~~-~~~rl~c~~~~~~~a~~la~GG~k 440 (463)
T KOG0270|consen 413 EHSF-KLGRLHCFALDPDVAFTLAFGGEK 440 (463)
T ss_pred cccc-cccceeecccCCCcceEEEecCcc
Confidence 1111 123377888899888888777644
No 156
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.32 E-value=4.2e-11 Score=125.71 Aligned_cols=147 Identities=15% Similarity=0.256 Sum_probs=116.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE-EEEec-----CCCCCcEEEEEcc-CCCCEEEEEeCCCeEEEE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC-LKVLS-----GHRRTPWVVRFHP-LRSEILASGSLDHEVRLW 165 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~-v~~L~-----gH~~~VtsVafSP-~dg~lLaSgS~DgtVrLW 165 (792)
.+-+.|.|+.|.|++.++++-. |..|.+|++..+.. +..+. +|....++-+|+| ++++.+++ ..|+++..|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEE
Confidence 3455899999999999999876 77899999987765 33332 3566778899999 55666665 469999999
Q ss_pred ECCCCcEEEEec--cCCCeeEEEEcCCCc-EEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 166 DANTSECIGSCD--FYRPIASIAFHAEGE-LLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 166 Dl~tg~~v~t~~--h~s~V~sVafSpdG~-~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
|+++.++...+. |...+..+.|+|+.+ +|++++|++ |+|||.++.+... ....+|.-+|.+|.|+|.-+.|+.+
T Consensus 199 D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv--~el~~HsHWvW~VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 199 DLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV--QELPGHSHWVWAVRFNPEHDQLILS 276 (370)
T ss_pred EccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc--cccCCCceEEEEEEecCccceEEEe
Confidence 999988877774 888899999999876 566777555 9999999887542 4456789999999999988777777
Q ss_pred Ee
Q 036953 242 AE 243 (792)
Q Consensus 242 ~s 243 (792)
++
T Consensus 277 ~~ 278 (370)
T KOG1007|consen 277 GG 278 (370)
T ss_pred cC
Confidence 65
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.31 E-value=1.4e-11 Score=134.03 Aligned_cols=147 Identities=24% Similarity=0.377 Sum_probs=119.9
Q ss_pred CCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCc---------EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEE
Q 036953 95 PRSTIAAAFSPDGR-TLASTHGDHTVKIIDCQTGN---------CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRL 164 (792)
Q Consensus 95 ~~~V~sLafSPDG~-~LaSGS~DGtVrIWDl~tgk---------~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrL 164 (792)
..+|.++.|.++.. +|++|+.|..|+||-++.+. ....+..|...|+++.|+| ++++|+||+.+++|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 35699999998655 99999999999999876432 2345678999999999999 9999999999999999
Q ss_pred EECC--------C-----Cc-E-E-EEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 165 WDAN--------T-----SE-C-I-GSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 165 WDl~--------t-----g~-~-v-~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
|... + .+ . + +.+ .|...|..++|++++.++++++ ++.+++||+..+.... ....|..-+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---~~~dh~~yv 168 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---ILDDHEHYV 168 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe---ecccccccc
Confidence 9776 2 11 1 1 112 4778899999999999999999 6669999999998543 566788999
Q ss_pred EEEEEccCCCeEEEEEeeC
Q 036953 227 RAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~ 245 (792)
..++|.|-+++++.-+.+.
T Consensus 169 qgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 169 QGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred ceeecchhhhhhhhhccCc
Confidence 9999999999887655544
No 158
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.31 E-value=4.8e-10 Score=124.66 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=125.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE 171 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~ 171 (792)
.+|.+....++..|+.+.+++++.|+.++||+ ..+.+.... -..++.++.|+| .+ .++.|+..|...+.|.++..
T Consensus 365 ~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 365 QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEecccce
Confidence 46888889999999999999999999999999 455555544 456789999999 66 99999999999999999977
Q ss_pred EEEEeccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 172 CIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 172 ~v~t~~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
.+.....+.+++.+.|+|+|.+||+++. +.|+||-+........... .-+..+|+.++|++|++++..-+.+++|--|
T Consensus 440 lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~-k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 440 LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVG-KCSGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEee-eecCceeEEeeecCCCceEEeccCceEEEEE
Confidence 6666555899999999999999999994 5599999977664431221 2234899999999999998887777776554
No 159
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.30 E-value=7.8e-11 Score=123.85 Aligned_cols=234 Identities=12% Similarity=0.164 Sum_probs=160.5
Q ss_pred CccCCCCCCC--CCCCCCCCCCCCCceEeeecccc-eeeCCCCceeeeEEeeCCCceEeecCCCceeec--CCcEEEEEe
Q 036953 2 TGLSWPHDQN--SLRSQPSNHLRRRARNVSRLLAH-REISPKTKYVPKRQWVDASKLKTCGPSDSSVRD--AKRGLVSWV 76 (792)
Q Consensus 2 ~~~~w~~~~~--~~~~~~~~s~~s~~r~V~~l~~~-rels~~tk~V~s~aWspd~~lla~G~~a~sv~d--~~~~L~S~s 76 (792)
|..-|++++. .|..+.+ .+.+.++|+.... ..+... ...+.+.+.-.|+...++-|+ .-..+.+.+
T Consensus 100 tK~~wiPd~~g~~pdlLAT---s~D~LRlWri~~ee~~~~~~------~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 100 TKLMWIPDSKGVYPDLLAT---SSDFLRLWRIGDEESRVELQ------SVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred cceEecCCccccCcchhhc---ccCeEEEEeccCcCCceehh------hhhccCcccccCCcccccccccCCcceeEeec
Confidence 3455777765 4433433 4667888877642 112111 111111121223333333333 245567777
Q ss_pred CCCeEEEEeccCC-------CcCCCCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcEEEEec---CCCCCcEEEEE
Q 036953 77 EAESLRHLSAKYC-------PLVPPPRSTIAAAFSPDG-RTLASTHGDHTVKIIDCQTGNCLKVLS---GHRRTPWVVRF 145 (792)
Q Consensus 77 ~d~sIrvWd~~t~-------~L~gH~~~V~sLafSPDG-~~LaSGS~DGtVrIWDl~tgk~v~~L~---gH~~~VtsVaf 145 (792)
-|.+-.+|+++++ +|..|.+.|+.++|...+ +.|++.+.||.|++||++..+....+. ....+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 8889999998764 578999999999999844 578999999999999998766443333 22457788999
Q ss_pred ccCCCCEEEEEeCC-CeEEEEECCC-CcEEEEe-ccCCCeeEEEEcCCC-cEEEEEcCCe-EEEEECCCCCc--ccCCeE
Q 036953 146 HPLRSEILASGSLD-HEVRLWDANT-SECIGSC-DFYRPIASIAFHAEG-ELLAVASGHK-LYIWPYNNKEE--ASSPII 218 (792)
Q Consensus 146 SP~dg~lLaSgS~D-gtVrLWDl~t-g~~v~t~-~h~s~V~sVafSpdG-~~LasgSdd~-V~IWDlrt~~~--~~~~~~ 218 (792)
+++|.++++|-..| ..|.+.|++. ..++..+ .|.+.|+.++|.|.. ..|++++|+. +.|||+...-. ...|..
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 99999999998766 5699999997 4567776 599999999999976 6888888777 99999976543 222344
Q ss_pred EecCCCCeEEEEEccCCCeEEEEEee
Q 036953 219 VLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 219 ~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
.......|+.+.|++....-++.+..
T Consensus 331 ay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 331 AYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhhccceeeeeeecccCCCEEEEEec
Confidence 44467789999999766555555543
No 160
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.29 E-value=1.2e-10 Score=132.23 Aligned_cols=175 Identities=14% Similarity=0.202 Sum_probs=122.0
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCC------cCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc-----------
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCP------LVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN----------- 128 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~------L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk----------- 128 (792)
.++-.|++.+-|.+++.||+++.. +.||...|.+++|.| |...|++|+.||.|.|||+.-..
T Consensus 110 pge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~ 189 (720)
T KOG0321|consen 110 PGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRI 189 (720)
T ss_pred CCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhh
Confidence 356688999999999999998663 578999999999999 67789999999999999986321
Q ss_pred ----------------EEEEecCCCCCcEE---EEEccCCCCEEEEEeC-CCeEEEEECCCCcEEEEe------c---c-
Q 036953 129 ----------------CLKVLSGHRRTPWV---VRFHPLRSEILASGSL-DHEVRLWDANTSECIGSC------D---F- 178 (792)
Q Consensus 129 ----------------~v~~L~gH~~~Vts---VafSP~dg~lLaSgS~-DgtVrLWDl~tg~~v~t~------~---h- 178 (792)
.+..-+.|...|.+ +.+.. |...|++++. |+.||+||+++.+..... . +
T Consensus 190 ~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~s 268 (720)
T KOG0321|consen 190 YGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHS 268 (720)
T ss_pred hccccCCCCCCchhhccccccccccCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcc
Confidence 01111234445554 44444 7889999987 999999999976443322 1 2
Q ss_pred --CCCeeEEEEcCCCcEEEEE-cCCeEEEEECCCCCcccCCeEEecC-CCC-eEEEEEccCCCeEEEEEe
Q 036953 179 --YRPIASIAFHAEGELLAVA-SGHKLYIWPYNNKEEASSPIIVLKT-RRS-LRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 179 --~s~V~sVafSpdG~~Lasg-Sdd~V~IWDlrt~~~~~~~~~~~~h-~~s-VtsVafSPdG~~LlaS~s 243 (792)
.-.+.++..+..|.+|++. .|+.|++||+.+..... ...+.++ ... -..-..+||+.+++.+..
T Consensus 269 krs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP-~~~~sg~~~~sf~vks~lSpd~~~l~SgSs 337 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP-VAEFSGKLNSSFYVKSELSPDDCSLLSGSS 337 (720)
T ss_pred cceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc-hhhccCcccceeeeeeecCCCCceEeccCC
Confidence 2346778888888766554 57779999998776432 1111121 111 123357899998887666
No 161
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.28 E-value=4.4e-11 Score=127.10 Aligned_cols=203 Identities=14% Similarity=0.182 Sum_probs=146.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC---cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-CC
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG---NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN-TS 170 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg---k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~-tg 170 (792)
..+|+|.+|++|+..+|.+-..+.|.||..... +..++++.|...|++++|+| ..+.|++|+.|..-++|... .+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCCC
Confidence 567999999999999999999999999987654 46788999999999999999 88999999999999999984 44
Q ss_pred cE---EEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccC-CeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 171 EC---IGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASS-PIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 171 ~~---v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~-~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+- +..+.++..++++.|+|.++.|++++..+ |.||-+........ .......+++|++++|||++-.+++++.|.
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 32 23347899999999999999999999766 89998877664321 122344678999999999998666666566
Q ss_pred ccccCCCce-eeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 246 DLDSSDSSM-TRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 246 dLrs~d~~~-~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
..+.....+ .+........| |..+-+..-..-.....++|-.+.|+|+|..|+
T Consensus 169 k~rVfSayIK~Vdekpap~pW------------gsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPW------------GSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred ceeEEEEeeeccccCCCCCCC------------ccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 555322221 11111111111 111111110001113578999999999999887
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.1e-11 Score=148.15 Aligned_cols=237 Identities=21% Similarity=0.258 Sum_probs=154.9
Q ss_pred eeeeEEeeCCCc-eEeecCCCceeecCCcEEEEEeCCCeEEEEecc--CCC----c---CCCCCCeEEEEEcCCCCE---
Q 036953 43 YVPKRQWVDASK-LKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAK--YCP----L---VPPPRSTIAAAFSPDGRT--- 109 (792)
Q Consensus 43 ~V~s~aWspd~~-lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~--t~~----L---~gH~~~V~sLafSPDG~~--- 109 (792)
+....+|+|.+. +++.|..+... |. +.+.+.++.+|... ... . ..-....+.++|.+.+..
T Consensus 8 Rta~~awSp~~~~~laagt~aq~~-D~-----sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~G 81 (1049)
T KOG0307|consen 8 RTATFAWSPASPPLLAAGTAAQQF-DA-----SFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHG 81 (1049)
T ss_pred ccceEEecCCCchhhHHHhhhhcc-cc-----ccccccccceeeecccCccccccccccccccccceeeeecccCCCccc
Confidence 557889999986 46666543333 11 11334444444432 111 1 112345789999997765
Q ss_pred -EEEEECCCeEEEEECCC---C---cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---ccC
Q 036953 110 -LASTHGDHTVKIIDCQT---G---NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC---DFY 179 (792)
Q Consensus 110 -LaSGS~DGtVrIWDl~t---g---k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~---~h~ 179 (792)
|+.|..||.|.+||... + ..+..+..|.+.|.++.|++..+++|++|+.||+|.|||+++-+.-..+ ...
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~ 161 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPP 161 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCc
Confidence 88888999999999865 2 2355667899999999999977789999999999999999985433333 245
Q ss_pred CCeeEEEEcCCC-cEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeee
Q 036953 180 RPIASIAFHAEG-ELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRA 257 (792)
Q Consensus 180 s~V~sVafSpdG-~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~ 257 (792)
+.|.+++|+..- ..|++++. +++.|||++..+.+. .......+..+..+.|||+...-++.+...|-
T Consensus 162 ~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii-~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~---------- 230 (1049)
T KOG0307|consen 162 SEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPII-KLSDTPGRMHCSVLAWHPDHATQLLVASGDDS---------- 230 (1049)
T ss_pred ccceEeccchhhhHHhhccCCCCCceeccccCCCccc-ccccCCCccceeeeeeCCCCceeeeeecCCCC----------
Confidence 779999999765 56777774 469999999886542 11222234568899999998776665543210
Q ss_pred cCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC-cEEE
Q 036953 258 TSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS-RIDL 310 (792)
Q Consensus 258 t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG-r~lv 310 (792)
.+.+.+|+. |...+.+.++.+|..-|..+.+.+.+ ++++
T Consensus 231 ---------~PviqlWDl-----R~assP~k~~~~H~~GilslsWc~~D~~lll 270 (1049)
T KOG0307|consen 231 ---------APVIQLWDL-----RFASSPLKILEGHQRGILSLSWCPQDPRLLL 270 (1049)
T ss_pred ---------CceeEeecc-----cccCCchhhhcccccceeeeccCCCCchhhh
Confidence 122333331 11222334445577777777777665 5555
No 163
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=3.7e-11 Score=134.20 Aligned_cols=219 Identities=17% Similarity=0.160 Sum_probs=147.0
Q ss_pred CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEcc-CCCCEEEEEeCCCeEEEEE
Q 036953 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHP-LRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP-~dg~lLaSgS~DgtVrLWD 166 (792)
..|.||.+.|+|+.|+.||.+|++|+.|-.+.|||.-..|.++.+. ||...|.++.|-| .+..+++||..|+.|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 3588999999999999999999999999999999998888887775 8999999999998 4667899999999999999
Q ss_pred CCCC----------cEEEEe-ccCCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCcccC----C---eEEecCCCCe
Q 036953 167 ANTS----------ECIGSC-DFYRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASS----P---IIVLKTRRSL 226 (792)
Q Consensus 167 l~tg----------~~v~t~-~h~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~----~---~~~~~h~~sV 226 (792)
+... +.+..+ .|...|..++-.|++ ..|.+++ |+.|+-+|++....-.. + .......-..
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 9841 222333 377889999999999 6788888 55599999987542110 0 0111122456
Q ss_pred EEEEEccCCCeEEEEEe-eCccccCCCceeeecCC--CcccCCCCc-eEEEE-ecCCCEEEEeeccCcccCCCceEEEeE
Q 036953 227 RAVHFHPHAAPFVLTAE-VNDLDSSDSSMTRATSP--GYLRYPPPA-VFVAN-AQSGDHVSLAAELPLMSSLPFLIVPSV 301 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s-~~dLrs~d~~~~l~t~s--g~~~~p~~~-~~l~~-~ssG~~~~l~s~l~~l~gh~~~VwdV~ 301 (792)
.++..+|...++++.++ +--.+..|.+..++... +..+.+++. ..++. ...|+. +...+ ...-......-+.
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl-kn~~g--n~~~~~~~~t~vt 280 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL-KNSQG--NLDRYITCCTYVT 280 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc-cCccc--ccccceeeeEEEE
Confidence 78999998887776665 33344445343333222 222333321 11111 111111 11111 1111233456788
Q ss_pred ECCCCcEEE
Q 036953 302 SIDDSRIDL 310 (792)
Q Consensus 302 ~SpDGr~lv 310 (792)
|+|+|.+++
T Consensus 281 fnpNGtElL 289 (758)
T KOG1310|consen 281 FNPNGTELL 289 (758)
T ss_pred ECCCCcEEE
Confidence 999999887
No 164
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=2.8e-10 Score=129.08 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=108.4
Q ss_pred CeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCcE--EEEecCCCCCcEEEEEccCCC
Q 036953 79 ESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGD---HTVKIIDCQTGNC--LKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 79 ~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~D---GtVrIWDl~tgk~--v~~L~gH~~~VtsVafSP~dg 150 (792)
..|.+||.... .+..|...+...+|||||++|+..+.+ ..|++||+.+++. +..+.+| ...++|+| |+
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP-DG 259 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP-DG 259 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-CC
Confidence 57888887543 356778889999999999999988754 4699999988764 3333343 34689999 88
Q ss_pred CEEEEEe-CCCeEEE--EECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--CeEEEEECCCCCcccCCeEEecCCCC
Q 036953 151 EILASGS-LDHEVRL--WDANTSECIGSCDFYRPIASIAFHAEGELLAVASG--HKLYIWPYNNKEEASSPIIVLKTRRS 225 (792)
Q Consensus 151 ~lLaSgS-~DgtVrL--WDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d~V~IWDlrt~~~~~~~~~~~~h~~s 225 (792)
+.|+.++ .++.+.| ||+.+++......+...+....|+|||+.|+..++ +..+||+++...... ....+..
T Consensus 260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~---~~l~~~~- 335 (429)
T PRK01742 260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA---SLVGGRG- 335 (429)
T ss_pred CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe---EEecCCC-
Confidence 8777654 6776555 57777765554456667788999999998877663 447777664432211 1122322
Q ss_pred eEEEEEccCCCeEEEEEe
Q 036953 226 LRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 226 VtsVafSPdG~~LlaS~s 243 (792)
..+.|+|||+.+++++.
T Consensus 336 -~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 336 -YSAQISADGKTLVMING 352 (429)
T ss_pred -CCccCCCCCCEEEEEcC
Confidence 45789999998877653
No 165
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.26 E-value=4.1e-11 Score=136.97 Aligned_cols=188 Identities=20% Similarity=0.316 Sum_probs=136.0
Q ss_pred eeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC----CCcCCCCCCeEEEEEcCCCCEEE
Q 036953 36 EISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY----CPLVPPPRSTIAAAFSPDGRTLA 111 (792)
Q Consensus 36 els~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t----~~L~gH~~~V~sLafSPDG~~La 111 (792)
++..+...+.+++-+|+++++++....... +--.|++|+... ..+.+|.-.|+.++|||||++|+
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~-----------ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LL 588 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLK-----------EHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLL 588 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCc-----------cceEEEEEeccchhhhheecccceEEEEEEECCCCcEEE
Confidence 344566677777778887777665433322 123466776542 25889999999999999999999
Q ss_pred EEECCCeEEEEECCCCc----EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC--cEEEE---eccCCCe
Q 036953 112 STHGDHTVKIIDCQTGN----CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS--ECIGS---CDFYRPI 182 (792)
Q Consensus 112 SGS~DGtVrIWDl~tgk----~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg--~~v~t---~~h~s~V 182 (792)
+.+.|.++.+|...... .....+.|++.|+++.|+| ++.+++|+|.|++|++|..... +.+.. +.+...|
T Consensus 589 svsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aV 667 (764)
T KOG1063|consen 589 SVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAV 667 (764)
T ss_pred EeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCce
Confidence 99999999999875332 2234678999999999999 9999999999999999998877 44433 3688899
Q ss_pred eEEEEcCC-----CcEEEEEc-CCeEEEEECCCCCcccC---------CeEEecCCCCeEEEEEccCC
Q 036953 183 ASIAFHAE-----GELLAVAS-GHKLYIWPYNNKEEASS---------PIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 183 ~sVafSpd-----G~~LasgS-dd~V~IWDlrt~~~~~~---------~~~~~~h~~sVtsVafSPdG 235 (792)
+.++|.+- +..+++|- .+.|.+|.........+ ......+...|+.+.|.|..
T Consensus 668 TAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~ 735 (764)
T KOG1063|consen 668 TAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTC 735 (764)
T ss_pred eeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEecccc
Confidence 99999763 23566666 56699999763321110 01122356788999999863
No 166
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.26 E-value=3.5e-11 Score=135.85 Aligned_cols=174 Identities=16% Similarity=0.192 Sum_probs=132.3
Q ss_pred CcEEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCC
Q 036953 69 KRGLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGH 136 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH 136 (792)
..+|..+.+|+.|++|.+..+ .+..|.+.|+++.|+| ....|++++.|-+|+|||+.+++....|.+|
T Consensus 640 ~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH 719 (1012)
T KOG1445|consen 640 DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH 719 (1012)
T ss_pred hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC
Confidence 456788889999999988643 3678999999999999 6778999999999999999999999999999
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEEec--cCCCeeEEEEcCCCcEEEEEc-C----CeEEEEECC
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE-CIGSCD--FYRPIASIAFHAEGELLAVAS-G----HKLYIWPYN 208 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~v~t~~--h~s~V~sVafSpdG~~LasgS-d----d~V~IWDlr 208 (792)
.+.|.+++|+| +++.+++.+.|++|++|+.+.++ ++..-. ....-..|.|--||+++++.+ + ..|.+||..
T Consensus 720 tdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 720 TDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred cCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 99999999999 99999999999999999998764 333321 223445788888999888776 2 228899887
Q ss_pred CCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 209 NKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 209 t~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+-...........-.-.+.--.+.+|...++++++
T Consensus 799 ~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGK 833 (1012)
T KOG1445|consen 799 TLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGK 833 (1012)
T ss_pred hccCCcceeeeecccCccccccccCCCceEEEecC
Confidence 66532211222222222333446667776776665
No 167
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.6e-09 Score=123.13 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=115.8
Q ss_pred eEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.++|.... ++..|...+.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+...+|+| |++.|
T Consensus 183 ~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SP-DG~~l 260 (435)
T PRK05137 183 RLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSP-DGRKV 260 (435)
T ss_pred EEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECC-CCCEE
Confidence 5667776533 35677888999999999999988764 468999999888653 4555677788899999 77665
Q ss_pred -EEEeCCCe--EEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCC----eEEEEECCCCCcccCCeEEecCCCCe
Q 036953 154 -ASGSLDHE--VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGH----KLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 154 -aSgS~Dgt--VrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd----~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
++.+.++. |.+||+.+++......+........|+|||+.|+..++. .|++||+..++.. .+..+...+
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~----~lt~~~~~~ 336 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR----RISFGGGRY 336 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE----EeecCCCcc
Confidence 46666655 777799888765544555566789999999988877632 3899998765432 223334556
Q ss_pred EEEEEccCCCeEEEEE
Q 036953 227 RAVHFHPHAAPFVLTA 242 (792)
Q Consensus 227 tsVafSPdG~~LlaS~ 242 (792)
....|+|||+.++.+.
T Consensus 337 ~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 337 STPVWSPRGDLIAFTK 352 (435)
T ss_pred cCeEECCCCCEEEEEE
Confidence 7789999999888765
No 168
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=8e-11 Score=129.71 Aligned_cols=211 Identities=18% Similarity=0.192 Sum_probs=152.4
Q ss_pred CCCCCCceEeeecccceeeCCCC------ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcC
Q 036953 19 NHLRRRARNVSRLLAHREISPKT------KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLV 92 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels~~t------k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~ 92 (792)
.+..+++.++|++.+.+...... +.+....-++++ ..|+..+..+-|.+...+++.+.
T Consensus 275 ~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~----------------~fia~~G~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS----------------NFIAIAGNNGHIHLLHAKTKELI 338 (514)
T ss_pred ecccceEEEEeeccccccccccCCCCcccchhheeEecCCC----------------CeEEEcccCceEEeehhhhhhhh
Confidence 55678899999998776555221 112222223333 34455556667777777766543
Q ss_pred C---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCc--EEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 93 P---PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP--WVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 93 g---H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V--tsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
. -.+.|..++|+.|++.|+.++.+|.|.+||++...+++.+.. .+.| +.+|.++ ++.+||+|+..|.|.|||.
T Consensus 339 ~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 339 TSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISL-NGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred heeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecC-CCceEEeccCcceEEEecc
Confidence 2 356799999999999999999999999999999999999873 3344 4466677 8899999999999999997
Q ss_pred CC------CcEEEEec-cCCCeeEEEEcCCCcEEEEEcC---CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe
Q 036953 168 NT------SECIGSCD-FYRPIASIAFHAEGELLAVASG---HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP 237 (792)
Q Consensus 168 ~t------g~~v~t~~-h~s~V~sVafSpdG~~LasgSd---d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~ 237 (792)
++ .+++..+. ....|+++.|++|.++|+.+|. +.+++..+.+...-..-...-..-..|+|++|+|.+.+
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~ 496 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGY 496 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCce
Confidence 64 46666664 6778999999999999999983 44999888665432210011223467999999999998
Q ss_pred EEEEEeeCcc
Q 036953 238 FVLTAEVNDL 247 (792)
Q Consensus 238 LlaS~s~~dL 247 (792)
++++.....+
T Consensus 497 lAvGNe~grv 506 (514)
T KOG2055|consen 497 LAVGNEAGRV 506 (514)
T ss_pred EEeecCCCce
Confidence 8877764443
No 169
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=8.2e-10 Score=126.34 Aligned_cols=190 Identities=18% Similarity=0.253 Sum_probs=147.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-EEEEecCC-CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN-CLKVLSGH-RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk-~v~~L~gH-~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
+.+|.+|||+.+.+.||.+-.||.|.||++..+- +...+.++ .+.|.+++|.+ +..|++.+.+|+|.-||+.++++
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e--~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE--GGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc--CCeEEeecCCceEEEEecccCce
Confidence 6789999999999999999999999999998754 34556654 46899999995 67899999999999999999999
Q ss_pred EEEec-cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccC
Q 036953 173 IGSCD-FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSS 250 (792)
Q Consensus 173 v~t~~-h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~ 250 (792)
...++ ..+.|++++.+|.+..++.+++++ ++.++....+... ...+....+.|.++.|+|++..++.++.++-|+
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~-~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir-- 179 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY-KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR-- 179 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE-EeecccccceEEEEEecCCccEEEecccCceEE--
Confidence 99886 678999999999999999998766 6666665554332 223344568999999999999888887666444
Q ss_pred CCceeeecCCCcccCCCCceEEEEecCCCEEEEee-ccC-cccCCCceEEEeEECCCCcEEE
Q 036953 251 DSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAA-ELP-LMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 251 d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s-~l~-~l~gh~~~VwdV~~SpDGr~lv 310 (792)
+|++..++..++-+ .+. +-++-+..||++.|-.||..+.
T Consensus 180 ---------------------iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~s 220 (691)
T KOG2048|consen 180 ---------------------IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIAS 220 (691)
T ss_pred ---------------------EEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEE
Confidence 44445554444222 222 2233678899999999998886
No 170
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.25 E-value=1.7e-10 Score=122.78 Aligned_cols=217 Identities=16% Similarity=0.206 Sum_probs=155.8
Q ss_pred CCCCCC--CCCC-CCCCCCCCCceEeeecccceeeCC-CC-------ceeeeEEeeCCCceEeecCCCceeecCCcEEEE
Q 036953 6 WPHDQN--SLRS-QPSNHLRRRARNVSRLLAHREISP-KT-------KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVS 74 (792)
Q Consensus 6 w~~~~~--~~~~-~~~~s~~s~~r~V~~l~~~rels~-~t-------k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S 74 (792)
|-+.|. +|.. +-..++...-+++|+.-..+..+. +. ...-++.|+|+|..+-+|
T Consensus 112 wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG--------------- 176 (406)
T KOG2919|consen 112 WYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG--------------- 176 (406)
T ss_pred eeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec---------------
Confidence 555555 2322 333667778899998866554441 11 134577888888776666
Q ss_pred EeCCCeEEEEec-cCC-----------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcE
Q 036953 75 WVEAESLRHLSA-KYC-----------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141 (792)
Q Consensus 75 ~s~d~sIrvWd~-~t~-----------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vt 141 (792)
...+|++++. +.+ --.+..+-+.|++|+| +.+.++.|+....+-||.-..+.++..+-+|.+.|+
T Consensus 177 --ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvT 254 (406)
T KOG2919|consen 177 --YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVT 254 (406)
T ss_pred --ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCee
Confidence 3456666666 222 1123456689999999 778999999999999999888889999999999999
Q ss_pred EEEEccCCCCEEEEEeC-CCeEEEEECCC-CcEEEEec-cCC-CeeEE--EEcCCCcEEEEEc-CCeEEEEECCCCCccc
Q 036953 142 VVRFHPLRSEILASGSL-DHEVRLWDANT-SECIGSCD-FYR-PIASI--AFHAEGELLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~-DgtVrLWDl~t-g~~v~t~~-h~s-~V~sV--afSpdG~~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
.++|++ +++.|++|.. |-.|.+||++. +.++..+. |.. .-..| ...|++++|++|+ ++.|++||+++....
T Consensus 255 hL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~- 332 (406)
T KOG2919|consen 255 HLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE- 332 (406)
T ss_pred eEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc-
Confidence 999999 8899999874 77899999997 45665553 322 23334 4468999999997 555999999885432
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 215 SPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 215 ~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+.....+.+.++.|+++|--. |+++++
T Consensus 333 -~sv~~~~sd~vNgvslnP~mp-ilatss 359 (406)
T KOG2919|consen 333 -VSVTGNYSDTVNGVSLNPIMP-ILATSS 359 (406)
T ss_pred -ccccccccccccceecCcccc-eeeecc
Confidence 234566889999999999966 444443
No 171
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=2.3e-10 Score=122.52 Aligned_cols=164 Identities=16% Similarity=0.258 Sum_probs=127.4
Q ss_pred EEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEE--ecCCC-CCcE
Q 036953 71 GLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTGNCLKV--LSGHR-RTPW 141 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tgk~v~~--L~gH~-~~Vt 141 (792)
.++.....+++++++..++ .+++|+..++.++|.. ....+.+|+.||+|++||+++...... +.++. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 4556667788999988775 4678999999999987 466889999999999999988765444 34555 4566
Q ss_pred EEEEccCCCCEEEEEe----CCCeEEEEECCCCcE-EEEe--ccCCCeeEEEEcCCC-cEEEEEcCCe-EEEEECCCCCc
Q 036953 142 VVRFHPLRSEILASGS----LDHEVRLWDANTSEC-IGSC--DFYRPIASIAFHAEG-ELLAVASGHK-LYIWPYNNKEE 212 (792)
Q Consensus 142 sVafSP~dg~lLaSgS----~DgtVrLWDl~tg~~-v~t~--~h~s~V~sVafSpdG-~~LasgSdd~-V~IWDlrt~~~ 212 (792)
+++.+- +.+++++|+ .|-.|.+||++..+. +..+ .|...|+++.|||.. ++|++||-++ |.|||++...+
T Consensus 122 ~ld~nc-k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 122 CLDLNC-KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred EeeccC-cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 677665 667777775 466799999998765 6666 489999999999976 6888888544 99999987765
Q ss_pred ccCCeEEecCCCCeEEEEEccCC
Q 036953 213 ASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 213 ~~~~~~~~~h~~sVtsVafSPdG 235 (792)
.........+...|..+.|+.++
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCC
Confidence 44344556678889999999888
No 172
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.23 E-value=1.3e-10 Score=129.77 Aligned_cols=172 Identities=17% Similarity=0.233 Sum_probs=133.5
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEEC
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHG 115 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~ 115 (792)
.+...+.+..|+++|. .+++.++|+.|++|.-..- .+.....+|+|++|.|+.+.++.+..
T Consensus 102 AH~~A~~~gRW~~dGt----------------gLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGA----------------GLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred hhhhhhhhcccCCCCc----------------eeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 3444556666666653 6778889999999985422 44566788999999998888877765
Q ss_pred CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEE
Q 036953 116 DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLA 195 (792)
Q Consensus 116 DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~La 195 (792)
+ .+.|=.+.....+-..++|.+-|.++.|++ ..+++++|+.|-..++||-........-.|+.+|++++|.|+ +.++
T Consensus 166 ~-h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~ 242 (737)
T KOG1524|consen 166 G-HISIKPLAANSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYL 242 (737)
T ss_pred C-eEEEeecccccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-ccee
Confidence 5 466767776666777889999999999999 889999999999999999865544444468899999999999 8888
Q ss_pred EEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 196 VASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 196 sgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+++.+.+++ . ....+.|..++|++||..+..+++
T Consensus 243 v~S~nt~R~---~-----------~p~~GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 243 LWSYNTARF---S-----------SPRVGSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred eeeeeeeee---c-----------CCCccceEEEEEcCCCceeecccc
Confidence 888766661 1 123466899999999998776665
No 173
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=5.9e-10 Score=126.47 Aligned_cols=182 Identities=14% Similarity=0.119 Sum_probs=119.1
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEE-C
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTH-G 115 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS-~ 115 (792)
....+....|+|+++.++... .+ ..+..|.+|+..+++ +.........++|+|||++|+.++ .
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s-----~~--------~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~ 268 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVS-----FE--------NKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSK 268 (429)
T ss_pred CCCccccceEcCCCCEEEEEE-----ec--------CCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEec
Confidence 344677889999988665431 01 123356667665442 222223345789999999988765 6
Q ss_pred CCeEEEE--ECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCC-cEEEEeccCCCeeEEEEcCCC
Q 036953 116 DHTVKII--DCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRLWDANTS-ECIGSCDFYRPIASIAFHAEG 191 (792)
Q Consensus 116 DGtVrIW--Dl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrLWDl~tg-~~v~t~~h~s~V~sVafSpdG 191 (792)
+|.+.|| |+.+++ ...+..+...+....|+| |++.|+.++ .++..++|++... .....+.+.. ....|+|||
T Consensus 269 ~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG 344 (429)
T PRK01742 269 DGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADG 344 (429)
T ss_pred CCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCC
Confidence 7766555 666665 455666777788999999 787666554 5788888876532 2222333333 457899999
Q ss_pred cEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 192 ELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 192 ~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
++|+..+.+.+.+||+.+++... .... .....+.|+|+|+.++.++.
T Consensus 345 ~~ia~~~~~~i~~~Dl~~g~~~~----lt~~-~~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 345 KTLVMINGDNVVKQDLTSGSTEV----LSST-FLDESPSISPNGIMIIYSST 391 (429)
T ss_pred CEEEEEcCCCEEEEECCCCCeEE----ecCC-CCCCCceECCCCCEEEEEEc
Confidence 99988887778889998776321 1111 12356789999998887764
No 174
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.22 E-value=1.4e-10 Score=132.57 Aligned_cols=209 Identities=13% Similarity=0.156 Sum_probs=164.0
Q ss_pred CceEeeecccceeeCC---CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-----CcCCCC
Q 036953 24 RARNVSRLLAHREISP---KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----PLVPPP 95 (792)
Q Consensus 24 ~~r~V~~l~~~rels~---~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----~L~gH~ 95 (792)
+-.+||++...++.+. +...+.++.++.... ....|.+++.|..|+++|...+ ++.+|.
T Consensus 481 GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~-------------~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS 547 (1080)
T KOG1408|consen 481 GNLRVYDLQELEYTCFMEAHESEILCLEYSFPVL-------------TNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS 547 (1080)
T ss_pred CceEEEEehhhhhhhheecccceeEEEeecCchh-------------hhHhhhhccCCceEEEEecccccchhhhhcccc
Confidence 4467888888777663 445677777765521 2245667788999999998744 688999
Q ss_pred CCeEEEEEcCCC--CEEEEEECCCeEEEEECCC-CcEEEEecCC-----CCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 96 RSTIAAAFSPDG--RTLASTHGDHTVKIIDCQT-GNCLKVLSGH-----RRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 96 ~~V~sLafSPDG--~~LaSGS~DGtVrIWDl~t-gk~v~~L~gH-----~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
..|+++.|..+| .+.++++.|+.|. |+... ..-...|..| ...+.+++..| ..+++++++.|+.|+|||+
T Consensus 548 ssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i 625 (1080)
T KOG1408|consen 548 SSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDI 625 (1080)
T ss_pred cceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEec
Confidence 999999999877 7899999998775 44332 1112233322 35788999999 8999999999999999999
Q ss_pred CCCcEEEEec----cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 168 NTSECIGSCD----FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 168 ~tg~~v~t~~----h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
.+++.++.|+ +++....+..+|.|.||++++.++ |.++|+-++++.. ...+|..-|+.+.|.+|-+.|+..+
T Consensus 626 ~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA---~m~GHsE~VTG~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 626 ESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA---QMTGHSEAVTGVKFLNDCKHLISVS 702 (1080)
T ss_pred cccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh---hhcCcchheeeeeecccchhheeec
Confidence 9999999984 567788899999999999988555 9999999999764 6788999999999999999999888
Q ss_pred eeCccccC
Q 036953 243 EVNDLDSS 250 (792)
Q Consensus 243 s~~dLrs~ 250 (792)
++.-|-.|
T Consensus 703 gDgCIFvW 710 (1080)
T KOG1408|consen 703 GDGCIFVW 710 (1080)
T ss_pred CCceEEEE
Confidence 76544433
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=1.2e-09 Score=112.87 Aligned_cols=147 Identities=21% Similarity=0.303 Sum_probs=116.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
..|++|-..|..+-++.++.|+.++-||+.+|+..+.++||++.|.++.--. ....++||++||++|+||+++++++..
T Consensus 115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEE
Confidence 3589999999777777778999999999999999999999999999998854 456789999999999999999999988
Q ss_pred ecc-----------CCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 176 CDF-----------YRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 176 ~~h-----------~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
++. ..+|.+++ -+...|++|++.++.+|+++..+.. ..+.-..++..+.|.. +.+++.+.-
T Consensus 194 ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~t----~vfpipa~v~~v~F~~--d~vl~~G~g 265 (325)
T KOG0649|consen 194 IEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSEST----CVFPIPARVHLVDFVD--DCVLIGGEG 265 (325)
T ss_pred eccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCce----EEEecccceeEeeeec--ceEEEeccc
Confidence 742 23455554 4566899888878999999998853 4556677788899964 445666644
Q ss_pred CccccCC
Q 036953 245 NDLDSSD 251 (792)
Q Consensus 245 ~dLrs~d 251 (792)
..+..+.
T Consensus 266 ~~v~~~~ 272 (325)
T KOG0649|consen 266 NHVQSYT 272 (325)
T ss_pred cceeeee
Confidence 4454443
No 176
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.21 E-value=1e-09 Score=112.09 Aligned_cols=159 Identities=16% Similarity=0.301 Sum_probs=109.6
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---CcC-CCCCCeEEEEEcCCCCEEEEE--ECC
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---PLV-PPPRSTIAAAFSPDGRTLAST--HGD 116 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---~L~-gH~~~V~sLafSPDG~~LaSG--S~D 116 (792)
...++.|+++|..+..-.. ... +...+-.. ....|..++.+.. .+. .....|.+++|+|+|+.|++. ..+
T Consensus 7 ~~~~~~W~~~G~~l~~~~~-~~~-~~~~ks~~--~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~ 82 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQ-TRV-DKSGKSYY--GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMP 82 (194)
T ss_pred ceEEEEecccCCEEEEEEE-Eee-ccCcceEE--eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCC
Confidence 3467889999986533211 000 11111111 1122333333322 111 234469999999999987655 356
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC---CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcE
Q 036953 117 HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD---HEVRLWDANTSECIGSCDFYRPIASIAFHAEGEL 193 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D---gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~ 193 (792)
..|.|||++ ++.+..+. ...+..+.|+| ++++|++++.+ |.|.+||+++.+.+..+.+.. +..++|+|||++
T Consensus 83 ~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~ 157 (194)
T PF08662_consen 83 AKVTLYDVK-GKKIFSFG--TQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRY 157 (194)
T ss_pred cccEEEcCc-ccEeEeec--CCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCE
Confidence 799999996 66666664 56778999999 99999998754 679999999999988887665 689999999999
Q ss_pred EEEEc-------CCeEEEEECCCC
Q 036953 194 LAVAS-------GHKLYIWPYNNK 210 (792)
Q Consensus 194 LasgS-------dd~V~IWDlrt~ 210 (792)
|+++. +++++||++...
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEEEEeccceeccccEEEEEecCe
Confidence 99885 345999998543
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=1.5e-10 Score=130.15 Aligned_cols=203 Identities=13% Similarity=0.198 Sum_probs=151.1
Q ss_pred eEEeeCCCceEee--cCCCceeecCCcEEEEEeCCCeEEEEeccCC------------CcCCCCCCeEEEEEcCCCCEEE
Q 036953 46 KRQWVDASKLKTC--GPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------------PLVPPPRSTIAAAFSPDGRTLA 111 (792)
Q Consensus 46 s~aWspd~~lla~--G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------------~L~gH~~~V~sLafSPDG~~La 111 (792)
...|++...+... +-.+.........+++++++++|++|+.... ++.+|.++|.|+++.+++..++
T Consensus 281 ~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y 360 (577)
T KOG0642|consen 281 TKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY 360 (577)
T ss_pred heecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE
Confidence 4456666543211 1122222334567899999999999998321 4679999999999999999999
Q ss_pred EEECCCeEEEEECCCC----------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE--------
Q 036953 112 STHGDHTVKIIDCQTG----------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI-------- 173 (792)
Q Consensus 112 SGS~DGtVrIWDl~tg----------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v-------- 173 (792)
+|+.||+|+.|++... .....|.||.+.|+.+++|+ ..+.|++|+.||+|++|+.....+.
T Consensus 361 sgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~ 439 (577)
T KOG0642|consen 361 SGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEH 439 (577)
T ss_pred eeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCcccc
Confidence 9999999999966421 23456789999999999999 7788999999999999987654330
Q ss_pred ------------------------------------EEec--------cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECC
Q 036953 174 ------------------------------------GSCD--------FYRPIASIAFHAEGELLAVASGHK-LYIWPYN 208 (792)
Q Consensus 174 ------------------------------------~t~~--------h~s~V~sVafSpdG~~LasgSdd~-V~IWDlr 208 (792)
..+. ....++.+.++|.+.+.+++-.+. |+++|..
T Consensus 440 g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 440 GYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred CCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 0000 012356788899998888888554 9999999
Q ss_pred CCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 209 NKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 209 t~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
+++... ....|...++++++.|+|.+|+....+..++.+..
T Consensus 520 ~~~~l~---s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 520 TGKILH---SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccccch---heeeccceecceeecCCCceEEeecCCceeehhhc
Confidence 988543 45668899999999999999888887776665443
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.20 E-value=1.4e-08 Score=110.51 Aligned_cols=211 Identities=11% Similarity=0.107 Sum_probs=124.8
Q ss_pred CCCceEeeecccceeeC-----CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCCCC
Q 036953 22 RRRARNVSRLLAHREIS-----PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPPPR 96 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels-----~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~ 96 (792)
..+.+.+|+.....++. ........+.++|+++.+.++.. .++....|...+++.+...... ....
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~----~~~~i~~~~~~~~g~l~~~~~~-----~~~~ 80 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR----PEFRVLSYRIADDGALTFAAES-----PLPG 80 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC----CCCcEEEEEECCCCceEEeeee-----cCCC
Confidence 35677888874322211 11123455677777775533311 1222233333333333322211 1223
Q ss_pred CeEEEEEcCCCCEEEEEEC-CCeEEEEECCCC----cEEEEecCCCCCcEEEEEccCCCCEEEE-EeCCCeEEEEECCCC
Q 036953 97 STIAAAFSPDGRTLASTHG-DHTVKIIDCQTG----NCLKVLSGHRRTPWVVRFHPLRSEILAS-GSLDHEVRLWDANTS 170 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~-DGtVrIWDl~tg----k~v~~L~gH~~~VtsVafSP~dg~lLaS-gS~DgtVrLWDl~tg 170 (792)
....++|+|++++|++++. ++.|.+|++++. +.+..+. +.....+++++| +++++++ ...++.|.+||+.+.
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCC
Confidence 4678999999999988774 889999999742 2233333 334467789999 7777754 456799999999863
Q ss_pred cEEE-------EeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCC-cccCCeEEe------cCCCCeEEEEEccC
Q 036953 171 ECIG-------SCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKE-EASSPIIVL------KTRRSLRAVHFHPH 234 (792)
Q Consensus 171 ~~v~-------t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~-~~~~~~~~~------~h~~sVtsVafSPd 234 (792)
..+. ..........+.|+|+|++|+++. ++.|.+||++... ......... .+......+.|+|+
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 3221 122345567899999999998886 5669999997421 111000111 11223346889999
Q ss_pred CCeEEEEEe
Q 036953 235 AAPFVLTAE 243 (792)
Q Consensus 235 G~~LlaS~s 243 (792)
+++++++..
T Consensus 239 g~~lyv~~~ 247 (330)
T PRK11028 239 GRHLYACDR 247 (330)
T ss_pred CCEEEEecC
Confidence 998887753
No 179
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.19 E-value=8.6e-11 Score=136.20 Aligned_cols=207 Identities=16% Similarity=0.214 Sum_probs=149.3
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
.+..++++++|..+++|..++. .+.||...|+.++.+.+...++++++|..|++|.+.++.++.++.+|++.|+++
T Consensus 201 tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtai 280 (1113)
T KOG0644|consen 201 TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAI 280 (1113)
T ss_pred ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeee
Confidence 3456888899999999998866 568999999999999988899999999999999999999999999999999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCc--------------EEEEec-----------------cCCCeeEEEEcCCCc
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSE--------------CIGSCD-----------------FYRPIASIAFHAEGE 192 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~--------------~v~t~~-----------------h~s~V~sVafSpdG~ 192 (792)
+|+| - .+.+.||++++||.+-.. .+..+. ....+..++|...+-
T Consensus 281 afsP-~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~l 355 (1113)
T KOG0644|consen 281 AFSP-R----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLL 355 (1113)
T ss_pred ccCc-c----ccCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccce
Confidence 9999 2 377899999999987110 000000 000122233333333
Q ss_pred EEEEEc------------CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCC
Q 036953 193 LLAVAS------------GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSP 260 (792)
Q Consensus 193 ~LasgS------------dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~s 260 (792)
.+++.+ +..+.+|++.++.... ....|.+.++.+.+||-...+..+++.+
T Consensus 356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H---~l~ghsd~~yvLd~Hpfn~ri~msag~d--------------- 417 (1113)
T KOG0644|consen 356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH---NLMGHSDEVYVLDVHPFNPRIAMSAGYD--------------- 417 (1113)
T ss_pred EEEeccccccccceeeeeeeEeeeeecccchhhh---hhcccccceeeeeecCCCcHhhhhccCC---------------
Confidence 333332 2237788887776543 4566788888888998877666555422
Q ss_pred CcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 261 GYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 261 g~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
...++|+...|.-+.... . ..+.+.+..||+||..++
T Consensus 418 -------gst~iwdi~eg~pik~y~-----~-gh~kl~d~kFSqdgts~~ 454 (1113)
T KOG0644|consen 418 -------GSTIIWDIWEGIPIKHYF-----I-GHGKLVDGKFSQDGTSIA 454 (1113)
T ss_pred -------CceEeeecccCCcceeee-----c-ccceeeccccCCCCceEe
Confidence 345666666665555444 1 267888999999999887
No 180
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1e-10 Score=127.98 Aligned_cols=146 Identities=20% Similarity=0.307 Sum_probs=120.6
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE---
Q 036953 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS--- 175 (792)
Q Consensus 99 ~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t--- 175 (792)
.+++|+.+|..+++|+.||++|||+..+...+.....|.+.|.++.|+| |+++|++.+.| ..++||++++-++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 6899999999999999999999999877777777788999999999999 99999999999 899999987611100
Q ss_pred -----------------------e-----------------cc------------CCCeeEEEEcCCCcEEEEEc-CCeE
Q 036953 176 -----------------------C-----------------DF------------YRPIASIAFHAEGELLAVAS-GHKL 202 (792)
Q Consensus 176 -----------------------~-----------------~h------------~s~V~sVafSpdG~~LasgS-dd~V 202 (792)
+ .. ...|.+++.+.+|++++.|+ ++.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 0 00 22578999999999999999 5559
Q ss_pred EEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 203 YIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 203 ~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
-|++..+-+..+ .....|...|+.|.|+||.++++..+.++...
T Consensus 306 ai~~~~~lq~~~--~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 306 AIYDAKSLQRLQ--YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAA 349 (398)
T ss_pred EEEEeceeeeeE--eehhhheeeeeeEEEcCCcCcccccccCCcee
Confidence 999998877653 34456888999999999999888877666544
No 181
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=4.9e-10 Score=126.56 Aligned_cols=149 Identities=19% Similarity=0.287 Sum_probs=111.6
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
+.+|.+.|.++...|.|.+|++|+.||+|+||.+.+|.|++.+. -.+.|.+|+|+|.....++.+.....+.+-+..-|
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeCcccc
Confidence 47999999999999999999999999999999999999999987 55689999999933333333333333444332110
Q ss_pred --------------------------------------cEEEEeccCCCeeEEEEcCCCcEEEEEcC----CeEEEEECC
Q 036953 171 --------------------------------------ECIGSCDFYRPIASIAFHAEGELLAVASG----HKLYIWPYN 208 (792)
Q Consensus 171 --------------------------------------~~v~t~~h~s~V~sVafSpdG~~LasgSd----d~V~IWDlr 208 (792)
..-..+.+...|..+.||..|.||++... ..|.|.++.
T Consensus 475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS 554 (733)
T KOG0650|consen 475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS 554 (733)
T ss_pred chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence 01123457788999999999999998762 239999997
Q ss_pred CCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 209 NKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 209 t~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+..... .+....+.|.++.|||...++++++.
T Consensus 555 K~~sQ~---PF~kskG~vq~v~FHPs~p~lfVaTq 586 (733)
T KOG0650|consen 555 KRKSQS---PFRKSKGLVQRVKFHPSKPYLFVATQ 586 (733)
T ss_pred cccccC---chhhcCCceeEEEecCCCceEEEEec
Confidence 766432 23345678999999999998887765
No 182
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.19 E-value=2.2e-09 Score=111.95 Aligned_cols=162 Identities=27% Similarity=0.416 Sum_probs=131.0
Q ss_pred CCCeEEEEeccC-----CCcCCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCC
Q 036953 77 EAESLRHLSAKY-----CPLVPPPRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 77 ~d~sIrvWd~~t-----~~L~gH~~~V~sLafSPDG~~LaSGS~-DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg 150 (792)
.++.+++|+... ..+..|...|..++|+|+++.+++++. |+.+++|++..++.+..+.+|...|.+++|+| ++
T Consensus 132 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 210 (466)
T COG2319 132 LDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP-DG 210 (466)
T ss_pred CCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcC-Cc
Confidence 378899998875 256789999999999999999998885 99999999998888999999999999999998 76
Q ss_pred C-EEEEEeCCCeEEEEECCCCcEEE-Ee-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCe
Q 036953 151 E-ILASGSLDHEVRLWDANTSECIG-SC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 151 ~-lLaSgS~DgtVrLWDl~tg~~v~-t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
. ++++++.|+.|++||...+..+. .+ .+.... -..|++++.++++++ ++.+++||++..... ......|...+
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~v 287 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL--LRTLSGHSSSV 287 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE--EEEEecCCccE
Confidence 6 66666999999999999887777 34 344443 338999998888777 455999999877651 11225678899
Q ss_pred EEEEEccCCCeEEEEE
Q 036953 227 RAVHFHPHAAPFVLTA 242 (792)
Q Consensus 227 tsVafSPdG~~LlaS~ 242 (792)
.++.|+|++..+++.+
T Consensus 288 ~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 288 LSVAFSPDGKLLASGS 303 (466)
T ss_pred EEEEECCCCCEEEEee
Confidence 9999999888777733
No 183
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=7.7e-09 Score=117.58 Aligned_cols=200 Identities=16% Similarity=0.141 Sum_probs=131.7
Q ss_pred eEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.++|.... .+..+...+...+|||||+.|+..+. +..|.+||+.+++.... ....+.+..+.|+| |++.|
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SP-DG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSP-DGSKL 257 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECC-CCCEE
Confidence 5777776433 34556678999999999999987643 45799999988864332 22334455789999 88777
Q ss_pred EEE-eCCC--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCC----eEEEEECCCCCcccCCeEEecCCCCe
Q 036953 154 ASG-SLDH--EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGH----KLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 154 aSg-S~Dg--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd----~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
+.. +.++ .|.+||+.+++..........+....|+|||+.|+..++. .|+++|+..++.. .........
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~----~lt~~~~~~ 333 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ----RITWEGSQN 333 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE----EeecCCCCc
Confidence 654 4454 5889999988776655555677889999999988877642 2666677665432 222233445
Q ss_pred EEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC
Q 036953 227 RAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS 306 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG 306 (792)
....|+|||+.++........ ..+.+++..++....+... .......|+|||
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~--------------------~~I~~~dl~~g~~~~Lt~~--------~~~~~p~~SpDG 385 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQ--------------------QHIAKQDLATGGVQVLTDT--------FLDETPSIAPNG 385 (429)
T ss_pred cCEEECCCCCEEEEEEccCCC--------------------ceEEEEECCCCCeEEeCCC--------CCCCCceECCCC
Confidence 678999999988876643210 1234444444544433321 112357799999
Q ss_pred cEEEEcc
Q 036953 307 RIDLQHA 313 (792)
Q Consensus 307 r~lv~~~ 313 (792)
+.|++..
T Consensus 386 ~~i~~~s 392 (429)
T PRK03629 386 TMVIYSS 392 (429)
T ss_pred CEEEEEE
Confidence 9998433
No 184
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=2.7e-09 Score=121.17 Aligned_cols=200 Identities=14% Similarity=0.160 Sum_probs=132.5
Q ss_pred eEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.+||.... ++..+...+.+.+|+|||+.|+..+. +..|++||+.+++... +..+.+......|+| +++.|
T Consensus 185 ~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~Sp-DG~~l 262 (433)
T PRK04922 185 ALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSP-DGRRL 262 (433)
T ss_pred EEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECC-CCCEE
Confidence 5777876533 35667778999999999999998874 3469999998877543 334455566789999 77655
Q ss_pred -EEEeCCC--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--Ce--EEEEECCCCCcccCCeEEecCCCCe
Q 036953 154 -ASGSLDH--EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG--HK--LYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 154 -aSgS~Dg--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d~--V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
++.+.++ .|.+||+.+++......+.......+|+|||+.|+..++ +. |+++|+.+++... ........
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~----lt~~g~~~ 338 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER----LTFQGNYN 338 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----eecCCCCc
Confidence 4556655 599999998876554445455567899999998888773 22 7888887655321 22223345
Q ss_pred EEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC
Q 036953 227 RAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS 306 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG 306 (792)
..++|+|||+.++.+..... . ..+.++...++..+.+..+ .......|+|||
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~----~----------------~~I~v~d~~~g~~~~Lt~~--------~~~~~p~~spdG 390 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGG----Q----------------YRIAVMDLSTGSVRTLTPG--------SLDESPSFAPNG 390 (433)
T ss_pred cCEEECCCCCEEEEEECCCC----c----------------eeEEEEECCCCCeEECCCC--------CCCCCceECCCC
Confidence 57899999998887653210 0 0234444444444433221 123456899999
Q ss_pred cEEEEcc
Q 036953 307 RIDLQHA 313 (792)
Q Consensus 307 r~lv~~~ 313 (792)
+++++..
T Consensus 391 ~~i~~~s 397 (433)
T PRK04922 391 SMVLYAT 397 (433)
T ss_pred CEEEEEE
Confidence 9988443
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.18 E-value=1.5e-08 Score=110.30 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=111.3
Q ss_pred eCCCeEEEEeccC-CC-----cCCCCCCeEEEEEcCCCCEEEEEE-CCCeEEEEECCC-CcE--EEEecCCCCCcEEEEE
Q 036953 76 VEAESLRHLSAKY-CP-----LVPPPRSTIAAAFSPDGRTLASTH-GDHTVKIIDCQT-GNC--LKVLSGHRRTPWVVRF 145 (792)
Q Consensus 76 s~d~sIrvWd~~t-~~-----L~gH~~~V~sLafSPDG~~LaSGS-~DGtVrIWDl~t-gk~--v~~L~gH~~~VtsVaf 145 (792)
..++.|.+|+..+ ++ ...+......++++|++++|++++ .++.|.+|++.. ++. +.... ..+....+.|
T Consensus 9 ~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~ 87 (330)
T PRK11028 9 PESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIST 87 (330)
T ss_pred CCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEE
Confidence 4567777777642 21 112345677899999999987765 478899999873 332 22222 3345778999
Q ss_pred ccCCCCEEEEEe-CCCeEEEEECCC-C---cEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccC---
Q 036953 146 HPLRSEILASGS-LDHEVRLWDANT-S---ECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASS--- 215 (792)
Q Consensus 146 SP~dg~lLaSgS-~DgtVrLWDl~t-g---~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~--- 215 (792)
+| +++++++++ .++.|.+||+.+ + +.+..+........++++|+++++++++ ++.|.+||+++......
T Consensus 88 ~~-~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~ 166 (330)
T PRK11028 88 DH-QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP 166 (330)
T ss_pred CC-CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC
Confidence 99 888887776 488999999974 2 2333333444567889999999987766 46699999976432210
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 216 PIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 216 ~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.............+.|+|+|++++++..
T Consensus 167 ~~~~~~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 167 AEVTTVEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred CceecCCCCCCceEEECCCCCEEEEEec
Confidence 0011122344678999999998887765
No 186
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.17 E-value=7.5e-10 Score=119.84 Aligned_cols=161 Identities=19% Similarity=0.233 Sum_probs=132.9
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC------CCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeE
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ------TGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEV 162 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~------tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtV 162 (792)
.+.+|.+.|+++.|+.++++|++|+.|..+++|++. +.+++.... .|...|.+++|.. ...++++|+.+++|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCccee
Confidence 467899999999999999999999999999999985 334555443 3668899999998 88999999999999
Q ss_pred EEEECCCCcEEEEeccCC---CeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeE
Q 036953 163 RLWDANTSECIGSCDFYR---PIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPF 238 (792)
Q Consensus 163 rLWDl~tg~~v~t~~h~s---~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~L 238 (792)
.+-|+++.+.+..+.+.. .|..+..+|..+.|++.++++ |.+||.+.......+..........+.+.|+|....|
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999999999987655 899999999999999988666 9999998877443344444456778899999999888
Q ss_pred EEEEe------eCccccCC
Q 036953 239 VLTAE------VNDLDSSD 251 (792)
Q Consensus 239 laS~s------~~dLrs~d 251 (792)
+++.. +||++...
T Consensus 210 i~~~~~~~G~~~~D~R~~~ 228 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQA 228 (609)
T ss_pred EEeccccCCCCceeecccc
Confidence 87665 66666443
No 187
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=5.9e-09 Score=118.55 Aligned_cols=188 Identities=14% Similarity=0.100 Sum_probs=121.1
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEE
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLAST 113 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSG 113 (792)
+......+....|+|+++.++... .. .....|.+|+...+ .+......+..++|+|||++|+..
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s-----~~--------~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~ 260 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVT-----FE--------SGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFA 260 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEE-----ec--------CCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEE
Confidence 333344677889999988765431 01 11234555555443 122333445678999999988865
Q ss_pred -ECCC--eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC-Ce--EEEEECCCCcEEEEeccCCCeeEEEE
Q 036953 114 -HGDH--TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD-HE--VRLWDANTSECIGSCDFYRPIASIAF 187 (792)
Q Consensus 114 -S~DG--tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D-gt--VrLWDl~tg~~v~t~~h~s~V~sVaf 187 (792)
+.++ .|++||+.+++... +..+...+....|+| |++.|+..+.+ +. |.++|+.+++...............|
T Consensus 261 ~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~ 338 (429)
T PRK03629 261 LSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADV 338 (429)
T ss_pred EcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEE
Confidence 3344 58899998887554 444455678899999 88888776654 44 55557777655443334445667899
Q ss_pred cCCCcEEEEEc-C-C--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 188 HAEGELLAVAS-G-H--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 188 SpdG~~LasgS-d-d--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
+|||++|+..+ + + .|++||+.+++... +.. ........|+|||+.++.++.+
T Consensus 339 SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~----Lt~-~~~~~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 339 SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV----LTD-TFLDETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCCeEE----eCC-CCCCCCceECCCCCEEEEEEcC
Confidence 99999988765 2 2 38999998775321 211 2234467899999988887753
No 188
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=2.1e-09 Score=114.02 Aligned_cols=221 Identities=14% Similarity=0.188 Sum_probs=151.5
Q ss_pred CCCCCCceEeeeccccee-------eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC--
Q 036953 19 NHLRRRARNVSRLLAHRE-------ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-- 89 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~re-------ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-- 89 (792)
.+.....++||+...... ...+...+.++.|-+. ..++.+.+++.|+++++|.....
T Consensus 30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhP--------------EfGqvvA~cS~Drtv~iWEE~~~~~ 95 (361)
T KOG2445|consen 30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHP--------------EFGQVVATCSYDRTVSIWEEQEKSE 95 (361)
T ss_pred eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCc--------------cccceEEEEecCCceeeeeeccccc
Confidence 455666788887422111 1123334555555333 34567788899999999987422
Q ss_pred -----------CcCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCc------EEEEec-------CCCCCcEEE
Q 036953 90 -----------PLVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTGN------CLKVLS-------GHRRTPWVV 143 (792)
Q Consensus 90 -----------~L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tgk------~v~~L~-------gH~~~VtsV 143 (792)
++......|+.+.|.| -|-.+++++.||.++||+.-.-- ....++ .+.....|+
T Consensus 96 ~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~Cv 175 (361)
T KOG2445|consen 96 EAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCV 175 (361)
T ss_pred ccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEE
Confidence 3445667899999999 67899999999999999875321 222222 366678899
Q ss_pred EEcc--CCCCEEEEEeCC-----CeEEEEECCCCc--EE--EEe-ccCCCeeEEEEcCCC----cEEEEEcCCeEEEEEC
Q 036953 144 RFHP--LRSEILASGSLD-----HEVRLWDANTSE--CI--GSC-DFYRPIASIAFHAEG----ELLAVASGHKLYIWPY 207 (792)
Q Consensus 144 afSP--~dg~lLaSgS~D-----gtVrLWDl~tg~--~v--~t~-~h~s~V~sVafSpdG----~~LasgSdd~V~IWDl 207 (792)
.|+| ....+|+.|+.+ +.++||...... .. .++ ++..+|++++|.|.- ..||+++.++|+||.+
T Consensus 176 sWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDgv~I~~v 255 (361)
T KOG2445|consen 176 SWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDGVRIFKV 255 (361)
T ss_pred eeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCcEEEEEE
Confidence 9998 345678877765 478999876532 22 222 689999999999963 5789999777999999
Q ss_pred CCCC------------c-----ccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 208 NNKE------------E-----ASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 208 rt~~------------~-----~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
+... . +........|+..|..+.|+-.|..|.+++.+..++.|...
T Consensus 256 ~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 256 KVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 7421 0 00011234588899999999999977777778888876643
No 189
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.17 E-value=4.2e-10 Score=125.66 Aligned_cols=160 Identities=14% Similarity=0.220 Sum_probs=120.2
Q ss_pred cEEEEEeCCCeEEEEeccC---CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 036953 70 RGLVSWVEAESLRHLSAKY---CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH 146 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t---~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafS 146 (792)
..++.++.|+.+.+.+... ..+..|.+.+.+-.|+|||.-|++.+.||.|+||. ++|....++.....+|.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~ 154 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWA 154 (737)
T ss_pred ceEEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEEC
Confidence 3466677888888776542 24678999999999999999999999999999999 4565545555567899999999
Q ss_pred cCCCCEEEEEeCCCeEEEEECCC-CcEEEEeccCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCCC
Q 036953 147 PLRSEILASGSLDHEVRLWDANT-SECIGSCDFYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRR 224 (792)
Q Consensus 147 P~dg~lLaSgS~DgtVrLWDl~t-g~~v~t~~h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~~ 224 (792)
|+..+.+++.+. .+.+=.+.. .++++--.|.+-|.+++|++..+++++|+.| +.+|||-.... ......|..
T Consensus 155 p~S~~vl~c~g~--h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~----Lf~S~~~ey 228 (737)
T KOG1524|consen 155 PNSNSIVFCQGG--HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGAN----LFTSAAEEY 228 (737)
T ss_pred CCCCceEEecCC--eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcc----cccCChhcc
Confidence 944455544433 334333433 3445545699999999999999999999955 59999975544 223455889
Q ss_pred CeEEEEEccCCC
Q 036953 225 SLRAVHFHPHAA 236 (792)
Q Consensus 225 sVtsVafSPdG~ 236 (792)
+|++++|+|+..
T Consensus 229 ~ITSva~npd~~ 240 (737)
T KOG1524|consen 229 AITSVAFNPEKD 240 (737)
T ss_pred ceeeeeeccccc
Confidence 999999999944
No 190
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.15 E-value=2.8e-09 Score=108.77 Aligned_cols=142 Identities=17% Similarity=0.255 Sum_probs=98.6
Q ss_pred EEEEEcCCCCEEEEEEC----------CCeEEEEECCC-CcEEEEec-CCCCCcEEEEEccCCCCEEEEE--eCCCeEEE
Q 036953 99 IAAAFSPDGRTLASTHG----------DHTVKIIDCQT-GNCLKVLS-GHRRTPWVVRFHPLRSEILASG--SLDHEVRL 164 (792)
Q Consensus 99 ~sLafSPDG~~LaSGS~----------DGtVrIWDl~t-gk~v~~L~-gH~~~VtsVafSP~dg~lLaSg--S~DgtVrL 164 (792)
..+.|+++|++|+.-.. -+...||.++. +..+..+. ...++|.+++|+| +++.++.+ ..++.|.+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP-~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSP-NGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECc-CCCEEEEEEccCCcccEE
Confidence 46788888887754332 13345555422 22333333 2455799999999 77776544 46789999
Q ss_pred EECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc----CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 165 WDANTSECIGSCDFYRPIASIAFHAEGELLAVAS----GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 165 WDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS----dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
||++ ++.+..+. ...++.+.|+|+|++|++++ .+.|.+||.++.+.+. ...+ ..++.++|+|||+++++
T Consensus 88 yd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~----~~~~-~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 88 YDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS----TFEH-SDATDVEWSPDGRYLAT 160 (194)
T ss_pred EcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee----cccc-CcEEEEEEcCCCCEEEE
Confidence 9997 66666665 46778999999999999987 2459999999666432 2233 35789999999999998
Q ss_pred EEeeCccc
Q 036953 241 TAEVNDLD 248 (792)
Q Consensus 241 S~s~~dLr 248 (792)
+...+.++
T Consensus 161 a~t~~r~~ 168 (194)
T PF08662_consen 161 ATTSPRLR 168 (194)
T ss_pred EEecccee
Confidence 87655333
No 191
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=2.6e-09 Score=115.21 Aligned_cols=167 Identities=14% Similarity=0.237 Sum_probs=121.7
Q ss_pred EEEEEeCCCeEEEEeccCC---Cc-CCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC----c----------EEE
Q 036953 71 GLVSWVEAESLRHLSAKYC---PL-VPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG----N----------CLK 131 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~---~L-~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg----k----------~v~ 131 (792)
.+.....|.++++++.+.. .+ ......|.|++|-| .++.|+.|...| |.||..... . .+.
T Consensus 112 ~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred hhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhhe
Confidence 3445566778888877643 12 23356799999999 666788887765 899976421 1 122
Q ss_pred EecCCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECC
Q 036953 132 VLSGHRRTPWVVRFHPLRSEILASGSL-DHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYN 208 (792)
Q Consensus 132 ~L~gH~~~VtsVafSP~dg~lLaSgS~-DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlr 208 (792)
.-.+| .+|+++.|++ |+..+++++. |..|.+||..++..+... ...+.+.-+.|+|||.+|+.+. |...++|+..
T Consensus 191 ~~pgh-~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 191 QDPGH-NPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred eCCCC-ceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence 23456 6899999999 8999999884 677999999998877665 4667788999999999888877 6669999664
Q ss_pred CCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 209 NKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 209 t~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
...... +. .. ..+.|...+|+|+|++|+.++.
T Consensus 269 q~wt~e-rw-~l-gsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 269 QSWTKE-RW-IL-GSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ccceec-ce-ec-cCCceeeeeecCCCCEEEEEEc
Confidence 432111 11 22 3348999999999999998876
No 192
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.14 E-value=3.3e-10 Score=126.81 Aligned_cols=164 Identities=18% Similarity=0.223 Sum_probs=125.5
Q ss_pred ecccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC-----cCCCCCCeEEEEEc
Q 036953 30 RLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP-----LVPPPRSTIAAAFS 104 (792)
Q Consensus 30 ~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~-----L~gH~~~V~sLafS 104 (792)
++.-.+|+..++..|++++|+.+|.++++| ++|..+.+||....+ -.+|...|.+++|-
T Consensus 39 rL~lE~eL~GH~GCVN~LeWn~dG~lL~SG----------------SDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 39 RLDLEAELTGHTGCVNCLEWNADGELLASG----------------SDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFV 102 (758)
T ss_pred hcchhhhhccccceecceeecCCCCEEeec----------------CCcceEEeecchhcceeeeeecccccceeEEeee
Confidence 345567888999999999999999888777 455556666654322 24799999999999
Q ss_pred C--CCCEEEEEECCCeEEEEECCCC----------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-
Q 036953 105 P--DGRTLASTHGDHTVKIIDCQTG----------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE- 171 (792)
Q Consensus 105 P--DG~~LaSGS~DGtVrIWDl~tg----------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~- 171 (792)
| +.+.+++|..|..|+++|+... +....+..|...|..++..|...+.+.++++||+++-+|++...
T Consensus 103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 9 6678899999999999999842 34456678999999999999666999999999999999998731
Q ss_pred ------EEEEe----ccCCCeeEEEEcCCC-cEEEEEcCCe-EEEEECCC
Q 036953 172 ------CIGSC----DFYRPIASIAFHAEG-ELLAVASGHK-LYIWPYNN 209 (792)
Q Consensus 172 ------~v~t~----~h~s~V~sVafSpdG-~~LasgSdd~-V~IWDlrt 209 (792)
+...+ ..--...++..+|.. .+|++|+.+- .++||.++
T Consensus 183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr 232 (758)
T KOG1310|consen 183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRR 232 (758)
T ss_pred CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence 11111 112346788999976 5788887666 99999543
No 193
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.14 E-value=5.7e-08 Score=101.43 Aligned_cols=202 Identities=22% Similarity=0.342 Sum_probs=139.7
Q ss_pred eCCCeEEEEeccCCC-----cCCCC-CCeEEEEE-cCCCC-EEEEEEC-CCeEEEEECCC-CcEEEEecCCCCCcEEEEE
Q 036953 76 VEAESLRHLSAKYCP-----LVPPP-RSTIAAAF-SPDGR-TLASTHG-DHTVKIIDCQT-GNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 76 s~d~sIrvWd~~t~~-----L~gH~-~~V~sLaf-SPDG~-~LaSGS~-DGtVrIWDl~t-gk~v~~L~gH~~~VtsVaf 145 (792)
..++.+.+|+..... +..+. ..+..+.+ ++++. .++..+. |+.+++||... ......+..|...|..+.|
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 163 (466)
T COG2319 84 SSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF 163 (466)
T ss_pred cCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEE
Confidence 356666666655442 22322 36777777 78787 5555444 99999999988 7788889999999999999
Q ss_pred ccCCCCEEEEEeC-CCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCc-EEEEEc-CCeEEEEECCCCCcccCCeEEec
Q 036953 146 HPLRSEILASGSL-DHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGE-LLAVAS-GHKLYIWPYNNKEEASSPIIVLK 221 (792)
Q Consensus 146 SP~dg~lLaSgS~-DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~-~LasgS-dd~V~IWDlrt~~~~~~~~~~~~ 221 (792)
+| ++..+++++. |+.+++|++..+..+..+. |...+.+++|+|++. ++++++ ++.|++||........ .....
T Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~--~~~~~ 240 (466)
T COG2319 164 SP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR--STLSG 240 (466)
T ss_pred CC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEe--eecCC
Confidence 99 7778888885 9999999999988877775 789999999999998 555535 5569999887444321 12344
Q ss_pred CCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCE-EEEeeccCcccCCCceEEEe
Q 036953 222 TRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDH-VSLAAELPLMSSLPFLIVPS 300 (792)
Q Consensus 222 h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~-~~l~s~l~~l~gh~~~VwdV 300 (792)
|.... -..|+|++..++.++.+..++. |....... .... .+|...|..+
T Consensus 241 ~~~~~-~~~~~~~~~~~~~~~~d~~~~~-----------------------~~~~~~~~~~~~~------~~~~~~v~~~ 290 (466)
T COG2319 241 HSDSV-VSSFSPDGSLLASGSSDGTIRL-----------------------WDLRSSSSLLRTL------SGHSSSVLSV 290 (466)
T ss_pred CCcce-eEeECCCCCEEEEecCCCcEEE-----------------------eeecCCCcEEEEE------ecCCccEEEE
Confidence 54543 2389999965654443433333 22222111 1111 2367888899
Q ss_pred EECCCCcEEE
Q 036953 301 VSIDDSRIDL 310 (792)
Q Consensus 301 ~~SpDGr~lv 310 (792)
.+.|++..++
T Consensus 291 ~~~~~~~~~~ 300 (466)
T COG2319 291 AFSPDGKLLA 300 (466)
T ss_pred EECCCCCEEE
Confidence 9999998888
No 194
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.13 E-value=1.3e-09 Score=116.22 Aligned_cols=178 Identities=14% Similarity=0.210 Sum_probs=130.4
Q ss_pred EEEEEeCCCeEEEEeccCCCcC------CCCCC---eEEEEEcCCCCEEEEEECCCeEEEEEC-CCCcE--EEEe-----
Q 036953 71 GLVSWVEAESLRHLSAKYCPLV------PPPRS---TIAAAFSPDGRTLASTHGDHTVKIIDC-QTGNC--LKVL----- 133 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L~------gH~~~---V~sLafSPDG~~LaSGS~DGtVrIWDl-~tgk~--v~~L----- 133 (792)
.+.+.+.+..|++||.-++++. .|.+. ..+++|+|||.+|+.|-. ..|++||+ +.|.. +...
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k 203 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGK 203 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccc
Confidence 3444567889999999988664 34443 568999999999998654 58999999 44432 1111
Q ss_pred cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCC
Q 036953 134 SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNK 210 (792)
Q Consensus 134 ~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~ 210 (792)
.+..+.|.+++|+|.+.+.++.++.-..+-|+.-..+.++..+ +|.+.|+.+.|+++|+.|++|. +++|..||++..
T Consensus 204 ~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 204 FGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS 283 (406)
T ss_pred ccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence 2347889999999988889999999999999988888888887 6999999999999999999998 677999999987
Q ss_pred CcccCCeEEecCCC-CeE--EEEEccCCCeEEEEEeeCccccCC
Q 036953 211 EEASSPIIVLKTRR-SLR--AVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 211 ~~~~~~~~~~~h~~-sVt--sVafSPdG~~LlaS~s~~dLrs~d 251 (792)
+.+. ..+..|.. +-. -.+..|+++.|+....+.-|+.|+
T Consensus 284 ~~pv--~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 284 RDPV--YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD 325 (406)
T ss_pred cchh--hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence 7542 12222322 222 345578888555543444444443
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.10 E-value=9e-11 Score=136.05 Aligned_cols=152 Identities=18% Similarity=0.291 Sum_probs=122.4
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
.|.+|...|+|+.|...|.++++|+.|..|+||...++.++....||.+.|+.++.+. +...+++++.|+.|++|-+..
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~-~n~~iaaaS~D~vIrvWrl~~ 263 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSS-NNTMIAAASNDKVIRVWRLPD 263 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccch-hhhhhhhcccCceEEEEecCC
Confidence 4679999999999999999999999999999999999999999999999999999998 888999999999999999999
Q ss_pred CcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeE-EecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 170 SECIGSC-DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPII-VLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 170 g~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~-~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+.++..+ +|.+.|++++|+|-. .++.++.+++||.+-.-....+.. .....+-+.++.|-.++..+++...+.
T Consensus 264 ~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ 338 (1113)
T KOG0644|consen 264 GAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDG 338 (1113)
T ss_pred CchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCc
Confidence 9999887 699999999999976 333366699999982222111111 122345566667766666565544433
No 196
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=7.9e-10 Score=124.44 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=108.3
Q ss_pred EEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--------CcEEEEecCCCCCcEEEEEccCCCCE
Q 036953 81 LRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT--------GNCLKVLSGHRRTPWVVRFHPLRSEI 152 (792)
Q Consensus 81 IrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t--------gk~v~~L~gH~~~VtsVafSP~dg~l 152 (792)
.+.|+.+. ++..|.+.|..++|.+....|++++.||++++|++.. -+++.+|.+|.++|.|+++.+ +++.
T Consensus 281 ~k~w~ik~-tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~ 358 (577)
T KOG0642|consen 281 TKKWNIKF-TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEH 358 (577)
T ss_pred heecceee-eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceE
Confidence 45677766 6788999999999999999999999999999999932 246789999999999999999 9999
Q ss_pred EEEEeCCCeEEEEECCCC------c---EE-E-EeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCc
Q 036953 153 LASGSLDHEVRLWDANTS------E---CI-G-SCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEE 212 (792)
Q Consensus 153 LaSgS~DgtVrLWDl~tg------~---~v-~-t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~ 212 (792)
+++|+.||+|++|++... . .+ . ..+|.+.++.+++|.....|++++ |+++++|+......
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 999999999999966521 1 11 1 136899999999999888888887 77799999866553
No 197
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.10 E-value=8.7e-10 Score=123.45 Aligned_cols=162 Identities=14% Similarity=0.261 Sum_probs=122.0
Q ss_pred CCcEEEEEeCCCeEEEEeccCCC---c-----CCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC------------
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCP---L-----VPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQT------------ 126 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~---L-----~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~t------------ 126 (792)
.+..+..+..-+.+.+.+..... + .--+..|+|+.|-| +...|+.+..+|.+++||...
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 34455666666666666654321 1 11246799999999 666788888999999997631
Q ss_pred --Cc--------------EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcC
Q 036953 127 --GN--------------CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHA 189 (792)
Q Consensus 127 --gk--------------~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSp 189 (792)
+. ++..+.--.+.|...+|+| |+++||+.+.||.+||+|..+.+.+..+. ..+...|++|+|
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 11 1111122345788999999 99999999999999999999887766664 567899999999
Q ss_pred CCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEcc
Q 036953 190 EGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP 233 (792)
Q Consensus 190 dG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP 233 (792)
||++|++|+.|. |.||.+...+.+ ..-.+|+.+|+.|+|.|
T Consensus 343 DGKyIvtGGEDDLVtVwSf~erRVV---ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEERRVV---ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CccEEEecCCcceEEEEEeccceEE---EeccccccceeeEeecc
Confidence 999999999555 999999877743 35567999999999998
No 198
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1e-08 Score=116.21 Aligned_cols=251 Identities=15% Similarity=0.161 Sum_probs=160.9
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCC--EEEEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGR--TLAST 113 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~--~LaSG 113 (792)
.++..+.++.-++.+.++ .++++|+++|+|.+.++... ...+.|.|++|+|.+. .||++
T Consensus 398 GHtg~Vr~iSvdp~G~wl----------------asGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWL----------------ASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred ccCCeEEEEEecCCccee----------------eecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEE
Confidence 344455555555555544 44466666666666655211 2235699999999543 45544
Q ss_pred ECCCeEEEEEC---------------------------------CCC----cEEEEecCCCCCcEEEEEccCCCCEEEEE
Q 036953 114 HGDHTVKIIDC---------------------------------QTG----NCLKVLSGHRRTPWVVRFHPLRSEILASG 156 (792)
Q Consensus 114 S~DGtVrIWDl---------------------------------~tg----k~v~~L~gH~~~VtsVafSP~dg~lLaSg 156 (792)
-... +.|-+. ... +-+...-.|...|+.+.||. +|++|++.
T Consensus 462 ~~~~-~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-kGDYlatV 539 (733)
T KOG0650|consen 462 VGEC-VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-KGDYLATV 539 (733)
T ss_pred ecCc-eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-CCceEEEe
Confidence 3332 333332 110 01223335888999999999 99999998
Q ss_pred eCC---CeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEc
Q 036953 157 SLD---HEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFH 232 (792)
Q Consensus 157 S~D---gtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafS 232 (792)
.-+ +.|.|.++...+...-| ...+.+.++.|||...+|++++...|+|||+.+....+ ........|..++.|
T Consensus 540 ~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvK---kL~tg~kwiS~msih 616 (733)
T KOG0650|consen 540 MPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVK---KLLTGSKWISSMSIH 616 (733)
T ss_pred ccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHH---HHhcCCeeeeeeeec
Confidence 654 56899999887666555 46778999999999999999998889999998876544 344567789999999
Q ss_pred cCCCeEEEEEeeC-----ccccCCCc---eeeecCCC-cccCCCCceEEEEecC-CCEEEEee-------------ccCc
Q 036953 233 PHAAPFVLTAEVN-----DLDSSDSS---MTRATSPG-YLRYPPPAVFVANAQS-GDHVSLAA-------------ELPL 289 (792)
Q Consensus 233 PdG~~LlaS~s~~-----dLrs~d~~---~~l~t~sg-~~~~p~~~~~l~~~ss-G~~~~l~s-------------~l~~ 289 (792)
|.|..|++++.+. |++..... +.+..... ...+......|+.+.+ |..+.+-. .+..
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~ 696 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKR 696 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeee
Confidence 9999999888744 34433222 11221111 2233333334444444 33322211 3345
Q ss_pred ccCCCce----EEEeEECCCCcEEE
Q 036953 290 MSSLPFL----IVPSVSIDDSRIDL 310 (792)
Q Consensus 290 l~gh~~~----VwdV~~SpDGr~lv 310 (792)
+.+|... |.++.|.|.-=+++
T Consensus 697 L~gH~~~~~~gVLd~~wHP~qpWLf 721 (733)
T KOG0650|consen 697 LRGHEKTNDLGVLDTIWHPRQPWLF 721 (733)
T ss_pred ccCceeecccceEeecccCCCceEE
Confidence 6778777 99999999988888
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=6.2e-10 Score=119.25 Aligned_cols=137 Identities=20% Similarity=0.340 Sum_probs=111.4
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC-CCCEEEEEeCCCeEEEEECCCCcEEEEec--c--CCCe
Q 036953 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL-RSEILASGSLDHEVRLWDANTSECIGSCD--F--YRPI 182 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~-dg~lLaSgS~DgtVrLWDl~tg~~v~t~~--h--~s~V 182 (792)
..++++-..|.|++||..+++.+..|+++...+..++|... .++.+.+|+.||+||+||++....+..+. . ..+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 56788888999999999999999999999999999999763 56889999999999999999865554442 2 2467
Q ss_pred eEEEEcCCCcEEEEEc----CCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 183 ASIAFHAEGELLAVAS----GHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 183 ~sVafSpdG~~LasgS----dd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
.+++..-.++.+++|. .+. |.+||+|..+... ......|.+.|++|+|||....++++++.+
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l-~~~~eSH~DDVT~lrFHP~~pnlLlSGSvD 187 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL-RQLNESHNDDVTQLRFHPSDPNLLLSGSVD 187 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchh-hhhhhhccCcceeEEecCCCCCeEEeeccc
Confidence 7777776788888886 223 9999999888631 123456999999999999999999999844
No 200
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=9.5e-09 Score=116.75 Aligned_cols=187 Identities=14% Similarity=0.142 Sum_probs=127.2
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEE-E
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLA-S 112 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~La-S 112 (792)
+......+....|+|+++.++... .. ..+..|.+|+..+++ +..+...+...+|+|||+.|+ +
T Consensus 197 lt~~~~~v~~p~wSpDG~~lay~s------~~-------~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~ 263 (435)
T PRK05137 197 LTDGSSLVLTPRFSPNRQEITYMS------YA-------NGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMS 263 (435)
T ss_pred EecCCCCeEeeEECCCCCEEEEEE------ec-------CCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEE
Confidence 444455678889999987664431 00 123456677765542 345566778899999999876 4
Q ss_pred EECCCe--EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEeccCCCeeEEEE
Q 036953 113 THGDHT--VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DH--EVRLWDANTSECIGSCDFYRPIASIAF 187 (792)
Q Consensus 113 GS~DGt--VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-Dg--tVrLWDl~tg~~v~t~~h~s~V~sVaf 187 (792)
.+.++. |.+||+.+++. ..+..+........|+| |++.|+..+. ++ .|.+||+.+++..........+....|
T Consensus 264 ~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~ 341 (435)
T PRK05137 264 LSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVW 341 (435)
T ss_pred EecCCCceEEEEECCCCce-EEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEE
Confidence 455554 77779887764 45666766778899999 8888777663 33 688889887765544444556677899
Q ss_pred cCCCcEEEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 188 HAEGELLAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 188 SpdG~~LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+|+|++|+.... + .|.+||+..+... .......+..+.|+|||+.|+.+..
T Consensus 342 SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-----~lt~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 342 SPRGDLIAFTKQGGGQFSIGVMKPDGSGER-----ILTSGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CCCCCEEEEEEcCCCceEEEEEECCCCceE-----eccCCCCCCCCeECCCCCEEEEEEc
Confidence 999999887652 2 3889998654421 1222234678899999998887664
No 201
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=1.5e-08 Score=110.04 Aligned_cols=257 Identities=14% Similarity=0.118 Sum_probs=166.3
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC---------CcC--CCCCCeEEEEEcC
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC---------PLV--PPPRSTIAAAFSP 105 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~---------~L~--gH~~~V~sLafSP 105 (792)
+..++..++.+.|+.++.+ |+++++|...++|++... .+. .|...|.|++|+-
T Consensus 52 ~~~H~GCiNAlqFS~N~~~----------------L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~ 115 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRF----------------LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL 115 (609)
T ss_pred hhhhccccceeeeccCCeE----------------EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc
Confidence 3344455556656555544 455567777788876421 233 4667899999999
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEecC--CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEEe---ccC
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSG--HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE-CIGSC---DFY 179 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk~v~~L~g--H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~v~t~---~h~ 179 (792)
..+++++|..+++|.+.|+.+.+.+.++.. ..+.|..+..+| -.++|++.+.++.|.+||.+..+ ++..+ ...
T Consensus 116 ~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~ 194 (609)
T KOG4227|consen 116 ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSG 194 (609)
T ss_pred CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCC
Confidence 889999999999999999999998888752 235999999999 57899999999999999998765 33222 456
Q ss_pred CCeeEEEEcCCCc-EEEEEc-CCeEEEEECCCCCcccCCe-EEec---CCCCeEEEEEccCCCeEEEEEe-----eCccc
Q 036953 180 RPIASIAFHAEGE-LLAVAS-GHKLYIWPYNNKEEASSPI-IVLK---TRRSLRAVHFHPHAAPFVLTAE-----VNDLD 248 (792)
Q Consensus 180 s~V~sVafSpdG~-~LasgS-dd~V~IWDlrt~~~~~~~~-~~~~---h~~sVtsVafSPdG~~LlaS~s-----~~dLr 248 (792)
..+..+.|+|... +|++.+ .+++.+||.+......... ..+. .......+.|+|+|..+++.-. ++|+.
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 6788999999875 556665 4559999998876431000 1111 1223467889999887765322 33433
Q ss_pred cCCCc-eeee-cCCCcccCCC------------------CceEEEEecC----CCE-------------EEEeeccCccc
Q 036953 249 SSDSS-MTRA-TSPGYLRYPP------------------PAVFVANAQS----GDH-------------VSLAAELPLMS 291 (792)
Q Consensus 249 s~d~~-~~l~-t~sg~~~~p~------------------~~~~l~~~ss----G~~-------------~~l~s~l~~l~ 291 (792)
+.-.. +... ...||.+.+. -.+.+|.... +.+ +.+..++.+++
T Consensus 275 S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr 354 (609)
T KOG4227|consen 275 SQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR 354 (609)
T ss_pred cccceeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe
Confidence 31111 1111 0112222110 0122232211 111 23444667889
Q ss_pred CCCceEEEeEECCCCcEEE
Q 036953 292 SLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 292 gh~~~VwdV~~SpDGr~lv 310 (792)
||...+..|.|+|-..+|+
T Consensus 355 GHRSv~NQVRF~~H~~~l~ 373 (609)
T KOG4227|consen 355 GHRSVPNQVRFSQHNNLLV 373 (609)
T ss_pred cccccccceeecCCcceEe
Confidence 9999999999999999998
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.08 E-value=4.5e-09 Score=113.72 Aligned_cols=148 Identities=19% Similarity=0.233 Sum_probs=124.0
Q ss_pred CceeecCCcEEEEEeCCCeEEEEeccCCCc-------CCCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCcEEEE
Q 036953 62 DSSVRDAKRGLVSWVEAESLRHLSAKYCPL-------VPPPRSTIAAAFSPDGRTLASTH--GDHTVKIIDCQTGNCLKV 132 (792)
Q Consensus 62 a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L-------~gH~~~V~sLafSPDG~~LaSGS--~DGtVrIWDl~tgk~v~~ 132 (792)
..+++-.+.+|+.+-++. |.++|++.-++ ..+..++.++.++.++.+|+.=+ ..|.|.|||+.+-+.+..
T Consensus 90 IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~ 168 (391)
T KOG2110|consen 90 ILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNT 168 (391)
T ss_pred eEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeE
Confidence 445666777888877665 99999986532 35777788888888888888543 468999999999999999
Q ss_pred ecCCCCCcEEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEecc---CCCeeEEEEcCCCcEEEEEcC-CeEEEEEC
Q 036953 133 LSGHRRTPWVVRFHPLRSEILASGSLDHE-VRLWDANTSECIGSCDF---YRPIASIAFHAEGELLAVASG-HKLYIWPY 207 (792)
Q Consensus 133 L~gH~~~VtsVafSP~dg~lLaSgS~Dgt-VrLWDl~tg~~v~t~~h---~s~V~sVafSpdG~~LasgSd-d~V~IWDl 207 (792)
+..|++.+-+++|++ +|.+|||++..|+ ||++.+.+|+.+..|.. ...|.+++|++++++|++.++ ++|+||.+
T Consensus 169 I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 169 INAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred EEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEe
Confidence 999999999999999 9999999999998 79999999999999853 346889999999999999885 55999999
Q ss_pred CCCC
Q 036953 208 NNKE 211 (792)
Q Consensus 208 rt~~ 211 (792)
....
T Consensus 248 ~~~~ 251 (391)
T KOG2110|consen 248 EKVS 251 (391)
T ss_pred cccc
Confidence 7655
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.08 E-value=1.7e-09 Score=123.09 Aligned_cols=144 Identities=23% Similarity=0.347 Sum_probs=121.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
.|+.++|-|||..|+.+..| .+.|||.+.|..+..+++|+..|.+++|+. |++.+++|+.|+.|.+|+-+- +-+..+
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~kl-EG~LkY 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKL-EGILKY 90 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEcc-CCceeccCCCceeEEEecccc-cceeee
Confidence 79999999999999988766 699999999999999999999999999999 999999999999999998643 334556
Q ss_pred ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 177 DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 177 ~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
.|.+.|.|+.|+|-...|++++=...-+|........ .......|.+++|..||.+++.+-....|.
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~-----K~kss~R~~~CsWtnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS-----KHKSSSRIICCSWTNDGQYLALGMFNGTIS 157 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH-----hhhhheeEEEeeecCCCcEEEEeccCceEE
Confidence 8999999999999999999998444778887554322 223356789999999999998877766554
No 204
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=1.9e-08 Score=114.36 Aligned_cols=183 Identities=13% Similarity=0.097 Sum_probs=119.3
Q ss_pred CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEE-EEECC
Q 036953 41 TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLA-STHGD 116 (792)
Q Consensus 41 tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~La-SGS~D 116 (792)
...+....|+|+++.++.... .. ....|.+|+...++ +..+.....+.+|+|||++|+ +.+.+
T Consensus 203 ~~~v~~p~wSpDg~~la~~s~----~~---------~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 203 AEPILSPAWSPDGKKLAYVSF----ER---------GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred CCccccccCCCCCCEEEEEec----CC---------CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC
Confidence 335667788888876554310 01 12345566655432 223344456789999999876 44555
Q ss_pred C--eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CCe--EEEEECCCCcEEEEeccCCCeeEEEEcCCC
Q 036953 117 H--TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DHE--VRLWDANTSECIGSCDFYRPIASIAFHAEG 191 (792)
Q Consensus 117 G--tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-Dgt--VrLWDl~tg~~v~t~~h~s~V~sVafSpdG 191 (792)
+ .|++||+.+++. ..+..+.......+|+| |++.|+.++. ++. |.++|+.+++.............++|+|||
T Consensus 270 g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG 347 (433)
T PRK04922 270 GNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDG 347 (433)
T ss_pred CCceEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCC
Confidence 5 599999988774 44555666667899999 8887776663 444 667787777654433333445578999999
Q ss_pred cEEEEEc-C-C--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 192 ELLAVAS-G-H--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 192 ~~LasgS-d-d--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
++|+..+ + + .|++||+.+++.. ...+........|+|||+.++.+..
T Consensus 348 ~~Ia~~~~~~~~~~I~v~d~~~g~~~-----~Lt~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 348 KKIAMVHGSGGQYRIAVMDLSTGSVR-----TLTPGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CEEEEEECCCCceeEEEEECCCCCeE-----ECCCCCCCCCceECCCCCEEEEEEe
Confidence 9988765 2 2 3999999776532 1222224456799999998887664
No 205
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.06 E-value=4.6e-08 Score=109.36 Aligned_cols=158 Identities=16% Similarity=0.174 Sum_probs=112.0
Q ss_pred eEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGD---HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~D---GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.+++.... .+..+...+...+|+|||++|+.+..+ ..|++||+.+++... +..+.+.+..++|+| +++.|
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp-Dg~~l 248 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP-DGSKL 248 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEE
Confidence 4666665422 345666678999999999999987654 479999998886543 334566677899999 77665
Q ss_pred E-EEeCCC--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCe
Q 036953 154 A-SGSLDH--EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 154 a-SgS~Dg--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
+ +.+.++ .|.+||+.+++......+........|+|+|+.|+..++ + .|++||+...+.. .+..+...+
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~ 324 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYN 324 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCc
Confidence 5 555444 588999988766554445455567899999998877653 2 4888898765522 233344567
Q ss_pred EEEEEccCCCeEEEEEe
Q 036953 227 RAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s 243 (792)
..+.|+|+|+.++.+..
T Consensus 325 ~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHR 341 (417)
T ss_pred cCeEECCCCCEEEEEEc
Confidence 78899999998887764
No 206
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.05 E-value=3.9e-08 Score=111.75 Aligned_cols=201 Identities=18% Similarity=0.170 Sum_probs=125.9
Q ss_pred eEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGD---HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~D---GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.++|.... ++..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+| |++.|
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SP-DG~~l 254 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSP-DGRTL 254 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECC-CCCEE
Confidence 4555555422 345677889999999999999887743 459999999887543 333445667899999 77766
Q ss_pred E-EEeCCCeEEEE--ECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--CeEEEE--ECCCCCcccCCeEEecCCCCe
Q 036953 154 A-SGSLDHEVRLW--DANTSECIGSCDFYRPIASIAFHAEGELLAVASG--HKLYIW--PYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 154 a-SgS~DgtVrLW--Dl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d~V~IW--Dlrt~~~~~~~~~~~~h~~sV 226 (792)
+ +.+.++...+| |+..++......+........|+|||+.|+..++ +...|| |+..++.. .........
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~----~lt~~g~~~ 330 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ----RVTFTGSYN 330 (427)
T ss_pred EEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE----EEecCCCCc
Confidence 5 66778876666 4555543332234445567899999998887663 334444 54444321 111222334
Q ss_pred EEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCC
Q 036953 227 RAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDS 306 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDG 306 (792)
....|+|||+.++.++.... ...++++...++..+.+..+ .......|+|||
T Consensus 331 ~~~~~SpDG~~Ia~~s~~~g--------------------~~~I~v~d~~~g~~~~lt~~--------~~~~~p~~spdg 382 (427)
T PRK02889 331 TSPRISPDGKLLAYISRVGG--------------------AFKLYVQDLATGQVTALTDT--------TRDESPSFAPNG 382 (427)
T ss_pred CceEECCCCCEEEEEEccCC--------------------cEEEEEEECCCCCeEEccCC--------CCccCceECCCC
Confidence 56889999998887664220 01244555455544433321 122457899999
Q ss_pred cEEEEccc
Q 036953 307 RIDLQHAS 314 (792)
Q Consensus 307 r~lv~~~~ 314 (792)
++|++...
T Consensus 383 ~~l~~~~~ 390 (427)
T PRK02889 383 RYILYATQ 390 (427)
T ss_pred CEEEEEEe
Confidence 99984433
No 207
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.04 E-value=8.4e-09 Score=111.66 Aligned_cols=165 Identities=16% Similarity=0.228 Sum_probs=123.6
Q ss_pred CCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC---CCCCcEEEEEccCCC
Q 036953 77 EAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG---HRRTPWVVRFHPLRS 150 (792)
Q Consensus 77 ~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g---H~~~VtsVafSP~dg 150 (792)
+.+.+++++.+..... -.+..|.++.++ -++|+++=.+. |+|||+++-+.++++.. +...+.++.+++ .+
T Consensus 66 qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n 141 (391)
T KOG2110|consen 66 QPRKLKVVHFKKKTTICEIFFPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-AN 141 (391)
T ss_pred CCceEEEEEcccCceEEEEecCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCC-CC
Confidence 3456777777655322 245678888886 56777777664 99999999998887763 444565566655 55
Q ss_pred CEEEEEe--CCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcC-Ce-EEEEECCCCCcccCCeEEec--CC
Q 036953 151 EILASGS--LDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASG-HK-LYIWPYNNKEEASSPIIVLK--TR 223 (792)
Q Consensus 151 ~lLaSgS--~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSd-d~-V~IWDlrt~~~~~~~~~~~~--h~ 223 (792)
.+++--+ ..|.|.+||+.+-+++..+. |++.+.+++|+++|.+||++++ ++ |+++.+..++... .+.. ..
T Consensus 142 ~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~---eFRRG~~~ 218 (391)
T KOG2110|consen 142 CYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLY---EFRRGTYP 218 (391)
T ss_pred ceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEee---eeeCCcee
Confidence 5766432 46889999999999998885 9999999999999999999995 44 9999998888654 2222 24
Q ss_pred CCeEEEEEccCCCeEEEEEeeCccc
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
..|++++|+|++++|.+++....|.
T Consensus 219 ~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 219 VSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred eEEEEEEECCCCCeEEEecCCCeEE
Confidence 5789999999999888777655444
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.00 E-value=8.1e-09 Score=110.12 Aligned_cols=190 Identities=14% Similarity=0.196 Sum_probs=139.9
Q ss_pred ceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-------CcCCCCCCeEEEEEcCCCCEEEEEE
Q 036953 42 KYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-------PLVPPPRSTIAAAFSPDGRTLASTH 114 (792)
Q Consensus 42 k~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-------~L~gH~~~V~sLafSPDG~~LaSGS 114 (792)
..+++.+|+++...++.+. ..+.+.++..... .+..|...|+++.|+|..+.|++|+
T Consensus 11 ~pitchAwn~drt~iAv~~----------------~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs 74 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSP----------------NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS 74 (361)
T ss_pred CceeeeeecCCCceEEecc----------------CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc
Confidence 4678899999987766553 2333444443322 4678999999999999999999999
Q ss_pred CCCeEEEEECCC-C--cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-----ccCCCeeEEE
Q 036953 115 GDHTVKIIDCQT-G--NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-----DFYRPIASIA 186 (792)
Q Consensus 115 ~DGtVrIWDl~t-g--k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-----~h~s~V~sVa 186 (792)
.|..-++|.... + ++..++..+++.++++.|+| +++.|++|+..+.|.+|=++...--+.- ...+.|.+++
T Consensus 75 ~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sld 153 (361)
T KOG1523|consen 75 HDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLD 153 (361)
T ss_pred CCCCccccccCCCCeeccceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeee
Confidence 999999999833 3 45566677999999999999 9999999999999999988765433221 3567789999
Q ss_pred EcCCCcEEEEEc-CCeEEEEECC-----CCCccc-----CCe-----EEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 187 FHAEGELLAVAS-GHKLYIWPYN-----NKEEAS-----SPI-----IVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 187 fSpdG~~LasgS-dd~V~IWDlr-----t~~~~~-----~~~-----~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
|||++-+|+.|+ |.+.++|..- ...... .+. ......+.+..+.|+|+|..|+-.+.+..+.
T Consensus 154 WhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~ 231 (361)
T KOG1523|consen 154 WHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVS 231 (361)
T ss_pred ccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceE
Confidence 999999999998 6667777542 211100 000 0113467899999999999988777655444
No 209
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.00 E-value=8.8e-08 Score=108.34 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=108.0
Q ss_pred EEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEE
Q 036953 81 LRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGD---HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILA 154 (792)
Q Consensus 81 IrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~D---GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLa 154 (792)
|.++|.... .+..+...+...+|+|||++|+..+.+ ..|.+||+.+++... +....+.+....|+| |++.|+
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~Sp-DG~~la 258 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSP-DGSKLA 258 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECC-CCCEEE
Confidence 555555433 345667788999999999999877643 368999998886543 333444556789999 777665
Q ss_pred -EEeCCC--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCeE
Q 036953 155 -SGSLDH--EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSLR 227 (792)
Q Consensus 155 -SgS~Dg--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sVt 227 (792)
+.+.++ .|.+||+.+++......+........|+|||+.|+..++ + .|+++|+.+++... .........
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~----lt~~~~~~~ 334 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER----VTFVGNYNA 334 (430)
T ss_pred EEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----eecCCCCcc
Confidence 555555 588889998876554445555667899999998877663 2 38888887765322 111122334
Q ss_pred EEEEccCCCeEEEEEe
Q 036953 228 AVHFHPHAAPFVLTAE 243 (792)
Q Consensus 228 sVafSPdG~~LlaS~s 243 (792)
...|+|+|+.++.+..
T Consensus 335 ~~~~Spdg~~i~~~~~ 350 (430)
T PRK00178 335 RPRLSADGKTLVMVHR 350 (430)
T ss_pred ceEECCCCCEEEEEEc
Confidence 6789999998887763
No 210
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.99 E-value=3.1e-08 Score=112.50 Aligned_cols=185 Identities=17% Similarity=0.139 Sum_probs=117.9
Q ss_pred CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEE-EEEC
Q 036953 40 KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLA-STHG 115 (792)
Q Consensus 40 ~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~La-SGS~ 115 (792)
....+....|+|+++.++.... .+ ....|.+|+..+++ +......+...+|+|||+.|+ +.+.
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~----~~---------~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~ 260 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSF----ES---------KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSR 260 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEc----cC---------CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEcc
Confidence 3445677889999876654310 01 12335666655442 223344567899999999887 4567
Q ss_pred CCeEEEEE--CCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEE--CCCCcEEEEeccCCCeeEEEEcCC
Q 036953 116 DHTVKIID--CQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DHEVRLWD--ANTSECIGSCDFYRPIASIAFHAE 190 (792)
Q Consensus 116 DGtVrIWD--l~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-DgtVrLWD--l~tg~~v~t~~h~s~V~sVafSpd 190 (792)
++...||. +.+++ ...+..+........|+| |++.|+..+. ++...+|. +.+++...............|+||
T Consensus 261 ~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD 338 (427)
T PRK02889 261 DGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD 338 (427)
T ss_pred CCCceEEEEECCCCC-cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence 77766665 44444 555665666677889999 8887776554 45666665 445544333323334456889999
Q ss_pred CcEEEEEcC-C---eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEee
Q 036953 191 GELLAVASG-H---KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 191 G~~LasgSd-d---~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
|++|+..+. + .|++||+.+++... ... ......+.|+|||+.|+.+...
T Consensus 339 G~~Ia~~s~~~g~~~I~v~d~~~g~~~~----lt~-~~~~~~p~~spdg~~l~~~~~~ 391 (427)
T PRK02889 339 GKLLAYISRVGGAFKLYVQDLATGQVTA----LTD-TTRDESPSFAPNGRYILYATQQ 391 (427)
T ss_pred CCEEEEEEccCCcEEEEEEECCCCCeEE----ccC-CCCccCceECCCCCEEEEEEec
Confidence 999887662 2 39999998776322 211 2234678999999988887753
No 211
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=3.8e-08 Score=106.38 Aligned_cols=216 Identities=14% Similarity=0.151 Sum_probs=138.4
Q ss_pred CCCceEeeecccc---eeeCCCCceeeeEEeeCCCce-EeecCCCceeecCCcEEEEEeCCC----eEEEEeccCCCc--
Q 036953 22 RRRARNVSRLLAH---REISPKTKYVPKRQWVDASKL-KTCGPSDSSVRDAKRGLVSWVEAE----SLRHLSAKYCPL-- 91 (792)
Q Consensus 22 ~s~~r~V~~l~~~---rels~~tk~V~s~aWspd~~l-la~G~~a~sv~d~~~~L~S~s~d~----sIrvWd~~t~~L-- 91 (792)
...-+.+|+.... +..+...+.+++++|.|.+.. ++.|. ..+..+|+.+... .++.-...-.++
T Consensus 118 nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC------r~gIciW~~s~tln~~r~~~~~s~~~~qvl~ 191 (445)
T KOG2139|consen 118 NDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC------RAGICIWSDSRTLNANRNIRMMSTHHLQVLQ 191 (445)
T ss_pred cCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee------cceeEEEEcCcccccccccccccccchhhee
Confidence 4455677766542 122234457899999998643 32221 2333444432211 111111111122
Q ss_pred -CCCCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 92 -VPPPRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 92 -~gH~~~V~sLafSPDG~~LaSGS~-DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
.+| ..|++|+|++||..+++++. |..|.|||.+++..+.....--+.++-+.|+| |+++|+.++-|+..++|+...
T Consensus 192 ~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 192 DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcc
Confidence 344 57999999999999999885 67899999999987766655567889999999 999999999999999996554
Q ss_pred C-cEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCccc---------CCeE--------EecC----CCCeE
Q 036953 170 S-ECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEAS---------SPII--------VLKT----RRSLR 227 (792)
Q Consensus 170 g-~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~---------~~~~--------~~~h----~~sVt 227 (792)
. ....-.-..+.|...+|+|+|++|..+..+.-.+|.+.-.++.. .... .... .+.+.
T Consensus 270 ~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq 349 (445)
T KOG2139|consen 270 SWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQ 349 (445)
T ss_pred cceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccc
Confidence 3 33333334558999999999998777665544455442221100 0000 0011 35678
Q ss_pred EEEEccCCCeEEEEEeeC
Q 036953 228 AVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 228 sVafSPdG~~LlaS~s~~ 245 (792)
+++|.|.|.+++++-+-.
T Consensus 350 ~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 350 CLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred eeeECCCCCEEEEEEcCC
Confidence 999999999999887633
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.97 E-value=2e-08 Score=119.50 Aligned_cols=224 Identities=16% Similarity=0.166 Sum_probs=153.5
Q ss_pred CCCCCceEeeecccceeeCCCCceeeeEEeeCCCceEeecCCCceeec---CCcEEEEEeCCCeEEEEeccCCCc-----
Q 036953 20 HLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRD---AKRGLVSWVEAESLRHLSAKYCPL----- 91 (792)
Q Consensus 20 s~~s~~r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d---~~~~L~S~s~d~sIrvWd~~t~~L----- 91 (792)
....+.++||+....+. .+....-+|.+-..++........+-+ ..+.|+..++-..|++||.+..++
T Consensus 1129 as~dGvIRIwk~y~~~~----~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1129 ASSDGVIRIWKDYADKW----KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred eccCceEEEeccccccc----CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc
Confidence 34566788998766543 233445567666554333222223333 456677777789999999986643
Q ss_pred CCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc---EEEEecCCCCC--cEEEEEccCCCCEEEEEeCCCeEEEE
Q 036953 92 VPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN---CLKVLSGHRRT--PWVVRFHPLRSEILASGSLDHEVRLW 165 (792)
Q Consensus 92 ~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk---~v~~L~gH~~~--VtsVafSP~dg~lLaSgS~DgtVrLW 165 (792)
.+....|+++.-+- .|+.|+.|-.||.|++||.+... .+...+.|+.. |..+.+.+..-..|++|+.||.|++|
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~ 1284 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLL 1284 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEE
Confidence 23344566665544 57999999999999999986432 46777788877 99999998444569999999999999
Q ss_pred ECCCCcEEEEe------ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCccc---CCeEEecCCCCeEEEEEccCCC
Q 036953 166 DANTSECIGSC------DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEAS---SPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 166 Dl~tg~~v~t~------~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~---~~~~~~~h~~sVtsVafSPdG~ 236 (792)
|++.......+ +.++..+++..|++...+|+|+...|+||++...+... .+.+.......+.+++|||..-
T Consensus 1285 DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1285 DLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred ecccCcccccceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhH
Confidence 99984222111 23456999999999999999998679999996654321 1222233456789999999877
Q ss_pred eEEEEEeeCcc
Q 036953 237 PFVLTAEVNDL 247 (792)
Q Consensus 237 ~LlaS~s~~dL 247 (792)
.++++..++.+
T Consensus 1365 llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1365 LLAAGSADSTV 1375 (1387)
T ss_pred hhhhccCCceE
Confidence 55555434433
No 213
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=2.1e-07 Score=106.55 Aligned_cols=158 Identities=18% Similarity=0.179 Sum_probs=105.8
Q ss_pred eEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGD---HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~D---GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.++|.... .+..+...+.+..|+|||++|+..+.+ ..|.+||+.+++... +....+......|+| |++.|
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSP-DG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSP-DGKKL 276 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECC-CCCEE
Confidence 4555554322 344566778899999999999876543 358899998876533 322233445789999 77766
Q ss_pred E-EEeCCCe--EEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCe
Q 036953 154 A-SGSLDHE--VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSL 226 (792)
Q Consensus 154 a-SgS~Dgt--VrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sV 226 (792)
+ +.+.++. |.+||+.+++......+.......+|+|||+.|+..++ + .|+++|+.+++... ........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~----Lt~~g~~~ 352 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR----LTFEGEQN 352 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----EecCCCCC
Confidence 5 4566664 77889988876554445555678899999998877663 2 28888887765322 11122233
Q ss_pred EEEEEccCCCeEEEEEe
Q 036953 227 RAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 227 tsVafSPdG~~LlaS~s 243 (792)
...+|+|||+.++.+..
T Consensus 353 ~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 353 LGGSITPDGRSMIMVNR 369 (448)
T ss_pred cCeeECCCCCEEEEEEe
Confidence 45789999998887654
No 214
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.94 E-value=1.2e-07 Score=110.59 Aligned_cols=267 Identities=16% Similarity=0.130 Sum_probs=164.9
Q ss_pred CceeeeEEeeCCCc--e-EeecC--CCceeecCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcC-CCCEE
Q 036953 41 TKYVPKRQWVDASK--L-KTCGP--SDSSVRDAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSP-DGRTL 110 (792)
Q Consensus 41 tk~V~s~aWspd~~--l-la~G~--~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSP-DG~~L 110 (792)
...+....|.+++. + .++.. ...........+.. ..+..+.+|+.+... .......|.|+.|+| +...+
T Consensus 180 ~~~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll 258 (555)
T KOG1587|consen 180 KRQVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLS-EPDGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLL 258 (555)
T ss_pred hcceeeeeeccCCCcceEEEEeecccccccccccccccc-cCCceEEEEecCCCCCceEEEecCCceeEEEeccCCcceE
Confidence 34678889988876 2 22111 11110000011111 223378899987551 123467799999999 88899
Q ss_pred EEEECCCeEEEEECCCCcE--EEE----ecCCCCCcEEEEEccCCC--CEEEEEeCCCeEEEEECCCCcE-EEEe-----
Q 036953 111 ASTHGDHTVKIIDCQTGNC--LKV----LSGHRRTPWVVRFHPLRS--EILASGSLDHEVRLWDANTSEC-IGSC----- 176 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~--v~~----L~gH~~~VtsVafSP~dg--~lLaSgS~DgtVrLWDl~tg~~-v~t~----- 176 (792)
+.|..+|+|.+||+..+.. ... ...|..+++.+.|.. +. .-+++++.||.|..|+++.-.. +...
T Consensus 259 ~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~-~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~ 337 (555)
T KOG1587|consen 259 AGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ-NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESK 337 (555)
T ss_pred EeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec-cCCCCceEEEecCCcEeeeeccccccchhhcccccc
Confidence 9999999999999987654 222 236899999999976 33 4499999999999999875321 1111
Q ss_pred -------ccCCCeeEEEEcCCC-cEEEEEcCCe-EEEEECCCCCcc----cCCe-EEecCCCCeEEEEEccCCCeEEEEE
Q 036953 177 -------DFYRPIASIAFHAEG-ELLAVASGHK-LYIWPYNNKEEA----SSPI-IVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 177 -------~h~s~V~sVafSpdG-~~LasgSdd~-V~IWDlrt~~~~----~~~~-~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
.....+++++|.+.. ..|++|++.+ |+--+-...+.. .+.. ....|.++|+.+.++|-+..+++++
T Consensus 338 ~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 338 KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee
Confidence 123468899999865 5677777544 544222222111 1112 3345889999999999999999999
Q ss_pred eeCccccCCCcee------eecCCC---cccC--CCCceEEEEecCCCEEEEee-----ccC--cccCCCceEEEeEECC
Q 036953 243 EVNDLDSSDSSMT------RATSPG---YLRY--PPPAVFVANAQSGDHVSLAA-----ELP--LMSSLPFLIVPSVSID 304 (792)
Q Consensus 243 s~~dLrs~d~~~~------l~t~sg---~~~~--p~~~~~l~~~ssG~~~~l~s-----~l~--~l~gh~~~VwdV~~Sp 304 (792)
++|.++.|..... +..... ...| ..+.+|+....+|+ +.++. ..+ ..+-+......+.+++
T Consensus 418 gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~ 496 (555)
T KOG1587|consen 418 GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDIWDLLQDDEEPVLSQKVCSPALTRVRWSP 496 (555)
T ss_pred ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eehhhhhccccCCcccccccccccceeecCC
Confidence 9999998876521 111111 1334 33555655544444 44443 111 2222345566677888
Q ss_pred CCcEEE
Q 036953 305 DSRIDL 310 (792)
Q Consensus 305 DGr~lv 310 (792)
+|++|+
T Consensus 497 ~g~~la 502 (555)
T KOG1587|consen 497 NGKLLA 502 (555)
T ss_pred CCcEEE
Confidence 899998
No 215
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=98.94 E-value=5.2e-09 Score=117.34 Aligned_cols=94 Identities=24% Similarity=0.359 Sum_probs=87.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
.+.|+..+|+|||++||+.+.||.+||||..+.+.+..++..-+...|++|+| |+++|++|++|--|.+|.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 45799999999999999999999999999999888877777788999999999 99999999999999999999998887
Q ss_pred Ee-ccCCCeeEEEEcC
Q 036953 175 SC-DFYRPIASIAFHA 189 (792)
Q Consensus 175 t~-~h~s~V~sVafSp 189 (792)
.- .|+++|..|+|+|
T Consensus 369 RGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccccccceeeEeecc
Confidence 75 6999999999986
No 216
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.92 E-value=1.4e-07 Score=105.37 Aligned_cols=181 Identities=15% Similarity=0.152 Sum_probs=120.0
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEE-ECC--
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLAST-HGD-- 116 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSG-S~D-- 116 (792)
.+....|+|+++.++.... . .....|.+|+..++. +..+...+.+++|+|||+.|+.. +.+
T Consensus 191 ~~~~p~~Spdg~~la~~~~-----~--------~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 191 PILSPAWSPDGQKLAYVSF-----E--------SGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred ceecccCCCCCCEEEEEEc-----C--------CCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCC
Confidence 4566678888776654310 0 012356677765542 33455567789999999988654 434
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC-C--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcE
Q 036953 117 HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD-H--EVRLWDANTSECIGSCDFYRPIASIAFHAEGEL 193 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D-g--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~ 193 (792)
..|++||+.+++. ..+..+........|+| +++.|+.++.. + .|.+||+.+++.............+.|+|+|++
T Consensus 258 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~ 335 (417)
T TIGR02800 258 PDIYVMDLDGKQL-TRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDL 335 (417)
T ss_pred ccEEEEECCCCCE-EECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCE
Confidence 3588999987764 44444555566789999 88877766543 3 588889888775544445566778899999999
Q ss_pred EEEEcC-C---eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 194 LAVASG-H---KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 194 LasgSd-d---~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
|+.++. + .|++||+.++... .. ..........|+|+|+.|+.+..
T Consensus 336 i~~~~~~~~~~~i~~~d~~~~~~~----~l-~~~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 336 IAFVHREGGGFNIAVMDLDGGGER----VL-TDTGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred EEEEEccCCceEEEEEeCCCCCeE----Ec-cCCCCCCCceECCCCCEEEEEEe
Confidence 888763 2 4999998775421 11 11223445689999998887765
No 217
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=4.3e-07 Score=102.76 Aligned_cols=187 Identities=11% Similarity=0.042 Sum_probs=117.5
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEE-
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLAS- 112 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaS- 112 (792)
+......+....|+|+++.++.... .++. ..|.+|+..+++ +......+...+|+|||++|+.
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~----~~~~---------~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~ 260 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSF----EQKR---------PRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFV 260 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEc----CCCC---------CEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEE
Confidence 3334445677789999876654311 0111 234455554331 2223334557899999998874
Q ss_pred EECCC--eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEeccCCCeeEEEE
Q 036953 113 THGDH--TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DH--EVRLWDANTSECIGSCDFYRPIASIAF 187 (792)
Q Consensus 113 GS~DG--tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-Dg--tVrLWDl~tg~~v~t~~h~s~V~sVaf 187 (792)
.+.++ .|++||+.+++.. .+..+........|+| +++.++..+. ++ .|.++|+.+++...............|
T Consensus 261 ~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 261 LSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRL 338 (430)
T ss_pred EccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEE
Confidence 44444 6888899887644 4555666677789999 7776665553 33 577888888775443322233446789
Q ss_pred cCCCcEEEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 188 HAEGELLAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 188 SpdG~~LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+|+|++|+.... + .|.+||+.+++... .. .........|+|||+.++.+..
T Consensus 339 Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~----lt-~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 339 SADGKTLVMVHRQDGNFHVAAQDLQRGSVRI----LT-DTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred CCCCCEEEEEEccCCceEEEEEECCCCCEEE----cc-CCCCCCCceECCCCCEEEEEEe
Confidence 999999887762 2 38999998765321 11 1112235689999998887764
No 218
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.87 E-value=3.9e-08 Score=102.78 Aligned_cols=152 Identities=15% Similarity=0.224 Sum_probs=111.5
Q ss_pred CCCeEEEEEcC-CCC--EEEEEECCCeEEEEECCCCcEE----------EEecCCCCCcEEEEEccCCCCEEEEEeCCCe
Q 036953 95 PRSTIAAAFSP-DGR--TLASTHGDHTVKIIDCQTGNCL----------KVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161 (792)
Q Consensus 95 ~~~V~sLafSP-DG~--~LaSGS~DGtVrIWDl~tgk~v----------~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt 161 (792)
.+.+.|..+.. +++ .++.|-.+|.|.+||+.++..+ .....|..+|.++.|.+ .-+.=++++.+..
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas-~~~rGisgga~dk 228 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS-SCDRGISGGADDK 228 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech-hhcCCcCCCcccc
Confidence 44566666544 444 4567778999999999987433 33346999999999988 5555677888888
Q ss_pred EEEEECCCC--cEEE--Eec-cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC
Q 036953 162 VRLWDANTS--ECIG--SCD-FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 162 VrLWDl~tg--~~v~--t~~-h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG 235 (792)
+..|+++.. .+.. .+. .+-.+..+..-||++.||+++ |++|+||+.++..... ....|...|++++|+|+.
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA---VLkyHsagvn~vAfspd~ 305 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA---VLKYHSAGVNAVAFSPDC 305 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh---hhhhhhcceeEEEeCCCC
Confidence 999988753 2211 111 334578889999999999999 8889999999988543 556689999999999998
Q ss_pred CeEEEEEeeCccccC
Q 036953 236 APFVLTAEVNDLDSS 250 (792)
Q Consensus 236 ~~LlaS~s~~dLrs~ 250 (792)
..+++++.+..|..|
T Consensus 306 ~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 306 ELMAAASKDARISLW 320 (323)
T ss_pred chhhhccCCceEEee
Confidence 766666655544433
No 219
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.86 E-value=5.6e-07 Score=102.60 Aligned_cols=145 Identities=17% Similarity=0.214 Sum_probs=93.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC-----CCeEEEEECCC---CcEEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHG-----DHTVKIIDCQT---GNCLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRL 164 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~-----DGtVrIWDl~t---gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrL 164 (792)
........+|||||++|+..+. |..+.+|++.. ++......++.+.....+|+| |++.|+..+ .++...+
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~l 307 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRI 307 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceE
Confidence 3444567899999999887653 22344477665 333344433334556789999 888776655 4665555
Q ss_pred E--ECCC-CcEEEEe-ccCCCeeEEEEcCCCcEEEEEcC----CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 165 W--DANT-SECIGSC-DFYRPIASIAFHAEGELLAVASG----HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 165 W--Dl~t-g~~v~t~-~h~s~V~sVafSpdG~~LasgSd----d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
| ++.. +.....+ .....+....|+|||+.|+..+. ..|++||+.+++... +......+....|+|||+
T Consensus 308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----Lt~~~~~~~~p~wSpDG~ 383 (428)
T PRK01029 308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----LTTSPENKESPSWAIDSL 383 (428)
T ss_pred EEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----ccCCCCCccceEECCCCC
Confidence 5 4432 2222333 34456678999999998887652 239999998876432 222334567899999999
Q ss_pred eEEEEEe
Q 036953 237 PFVLTAE 243 (792)
Q Consensus 237 ~LlaS~s 243 (792)
.|+.+..
T Consensus 384 ~L~f~~~ 390 (428)
T PRK01029 384 HLVYSAG 390 (428)
T ss_pred EEEEEEC
Confidence 8887664
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.84 E-value=1e-08 Score=113.55 Aligned_cols=199 Identities=18% Similarity=0.213 Sum_probs=145.7
Q ss_pred CCCceEeeecccceeeCCC-CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcC----CCCC
Q 036953 22 RRRARNVSRLLAHREISPK-TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLV----PPPR 96 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels~~-tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~----gH~~ 96 (792)
.+++..||+......=|.+ ...++++.|-|-.= .|++.++.+-++.-|+.++++. --.+
T Consensus 189 QK~y~yvYD~~GtElHClk~~~~v~rLeFLPyHf----------------LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G 252 (545)
T KOG1272|consen 189 QKKYVYVYDNNGTELHCLKRHIRVARLEFLPYHF----------------LLVAASEAGFLKYQDVSTGKLVASIRTGAG 252 (545)
T ss_pred hhceEEEecCCCcEEeehhhcCchhhhcccchhh----------------eeeecccCCceEEEeechhhhhHHHHccCC
Confidence 4566667766555444432 23556665555533 3444556666777777777543 3456
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
.+..|+-+|-...+-+|...|+|.+|.....+++..+..|.++|.++++.+ ++.+++|.+.|..++|||+++-..+.++
T Consensus 253 ~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 253 RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred ccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeecccccccee
Confidence 788899999888999999999999999999999888899999999999999 9999999999999999999998777777
Q ss_pred ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCC--CcccCCeEEecCCCCeEEEEEccCCCeE
Q 036953 177 DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNK--EEASSPIIVLKTRRSLRAVHFHPHAAPF 238 (792)
Q Consensus 177 ~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~--~~~~~~~~~~~h~~sVtsVafSPdG~~L 238 (792)
....+...+++|..| +||.+-++.|.||.-.-. .....+.........|..+.|.|-++.|
T Consensus 332 ~tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvL 394 (545)
T KOG1272|consen 332 RTPHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVL 394 (545)
T ss_pred ecCCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHee
Confidence 666777888888655 566666677999953222 1222233333345689999999988843
No 221
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.84 E-value=5.2e-07 Score=96.53 Aligned_cols=116 Identities=20% Similarity=0.278 Sum_probs=92.5
Q ss_pred CCCeEEEEEcCCCCEEEE-EECCCeEEEEECCCCcE--EEEecCCCCCcEEEEEccCCCCEEEEEeCCCe-EEEEECCCC
Q 036953 95 PRSTIAAAFSPDGRTLAS-THGDHTVKIIDCQTGNC--LKVLSGHRRTPWVVRFHPLRSEILASGSLDHE-VRLWDANTS 170 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaS-GS~DGtVrIWDl~tgk~--v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt-VrLWDl~tg 170 (792)
+++..++.-.-+...||. |-.-|.|.|-|+...+. -..+.+|...|.+++.+- +|.++||+|..|| |||||..+|
T Consensus 136 PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g 214 (346)
T KOG2111|consen 136 PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDG 214 (346)
T ss_pred CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCC
Confidence 444444443334344443 33468999999976654 367889999999999998 9999999999998 899999999
Q ss_pred cEEEEec---cCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCC
Q 036953 171 ECIGSCD---FYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKE 211 (792)
Q Consensus 171 ~~v~t~~---h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~ 211 (792)
+.+..+. ....|.+++|+|+..+|+++||. +|+||.++...
T Consensus 215 ~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 215 TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 9999985 44679999999999999999965 49999997654
No 222
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.81 E-value=3.3e-07 Score=108.06 Aligned_cols=180 Identities=12% Similarity=0.084 Sum_probs=128.2
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEecc-------CC-CcCCCCCCeEEEEEcCCCCEEEEEE
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAK-------YC-PLVPPPRSTIAAAFSPDGRTLASTH 114 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~-------t~-~L~gH~~~V~sLafSPDG~~LaSGS 114 (792)
-.++.+++|++.++++|. .||.|.+|.-- +. .+.-|.+.|.+++|++||.+|++|+
T Consensus 207 ~~t~~~~spn~~~~Aa~d----------------~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG 270 (792)
T KOG1963|consen 207 NITCVALSPNERYLAAGD----------------SDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG 270 (792)
T ss_pred cceeEEeccccceEEEec----------------cCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc
Confidence 356677888877776662 23333444221 11 3567899999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec------------cCCCe
Q 036953 115 GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD------------FYRPI 182 (792)
Q Consensus 115 ~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~------------h~s~V 182 (792)
..+.+.+|.+.+++ .+-+.--..+|..+.++| |+++.+.+..|+.|.+....+.....++. ..+-.
T Consensus 271 ~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 271 REGVLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred cceEEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 99999999999988 455566788999999999 99999999999999998775543332221 23446
Q ss_pred eEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEec--------CCCCeEEEEEccCCCeEEE
Q 036953 183 ASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLK--------TRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 183 ~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~--------h~~sVtsVafSPdG~~Lla 240 (792)
+.++++|.-+.++..+ .+.|++||+-+.+.+++...... +...++++.++..|.++++
T Consensus 349 t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT 415 (792)
T KOG1963|consen 349 TGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMAT 415 (792)
T ss_pred eeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEE
Confidence 6788899655555555 56699999988776543322221 2235788888888875544
No 223
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=5.4e-08 Score=106.88 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=111.7
Q ss_pred CCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE-------------
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL------------- 130 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v------------- 130 (792)
.+..+.++..|+++|+|+.... ....|.+.|.++.|+|||++|++-+.| ..+||+.+++.++
T Consensus 155 ~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~ 233 (398)
T KOG0771|consen 155 DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFS 233 (398)
T ss_pred CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhh
Confidence 4467888899999999994322 346799999999999999999999999 8999999876111
Q ss_pred -------------EEe---c------------CC-------------CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 131 -------------KVL---S------------GH-------------RRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 131 -------------~~L---~------------gH-------------~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
..+ . -+ ...|++++.+. ++++++.|+.||.|-+++..+
T Consensus 234 ~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~ 312 (398)
T KOG0771|consen 234 SCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKS 312 (398)
T ss_pred hceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcEEEEEece
Confidence 000 0 01 23789999999 999999999999999999999
Q ss_pred CcEEEEec--cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECC
Q 036953 170 SECIGSCD--FYRPIASIAFHAEGELLAVAS-GHKLYIWPYN 208 (792)
Q Consensus 170 g~~v~t~~--h~s~V~sVafSpdG~~LasgS-dd~V~IWDlr 208 (792)
.+.++... |...|+.+.|+||.+++++.+ +.+..+.-+.
T Consensus 313 lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 313 LQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 88888774 888999999999999988876 4446665553
No 224
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.80 E-value=5e-07 Score=107.92 Aligned_cols=211 Identities=13% Similarity=0.169 Sum_probs=137.1
Q ss_pred CCCceEeeecccceeeCCC------CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC------
Q 036953 22 RRRARNVSRLLAHREISPK------TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC------ 89 (792)
Q Consensus 22 ~s~~r~V~~l~~~rels~~------tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~------ 89 (792)
.+..+.||+-...+.+... .+.|+.+.+... +..-.+++++.|+.||+|+-...
T Consensus 1084 ~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe--------------~D~aLlLtas~dGvIRIwk~y~~~~~~~e 1149 (1387)
T KOG1517|consen 1084 DRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE--------------QDDALLLTASSDGVIRIWKDYADKWKKPE 1149 (1387)
T ss_pred CcceEEEEecccCceeccccCCCCCCCccceeeeecc--------------cchhheeeeccCceEEEecccccccCCce
Confidence 4566777777666665521 122333322111 23445778888999999974211
Q ss_pred ----------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeC
Q 036953 90 ----------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSL 158 (792)
Q Consensus 90 ----------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~ 158 (792)
.+.+-.+.-.-+.|.....+|++++.-..|+|||+...+++..+. +....|+++.-+...++.++.|-.
T Consensus 1150 LVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1150 LVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred eEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeec
Confidence 122222222445677655566666667899999998877777665 455678888776657899999999
Q ss_pred CCeEEEEECCCCc---EEEEe-ccCCC--eeEEEEcCCCc-EEEEEc-CCeEEEEECCCCCcccCCeEEecC---CCCeE
Q 036953 159 DHEVRLWDANTSE---CIGSC-DFYRP--IASIAFHAEGE-LLAVAS-GHKLYIWPYNNKEEASSPIIVLKT---RRSLR 227 (792)
Q Consensus 159 DgtVrLWDl~tg~---~v~t~-~h~s~--V~sVafSpdG~-~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h---~~sVt 227 (792)
||.|++||.+... .+..+ .|... |..+.+.+.|- .|++++ +|.|++||++...... ......| .+.++
T Consensus 1230 DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~-~~~iv~~~~yGs~lT 1308 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET-FLTIVAHWEYGSALT 1308 (1387)
T ss_pred CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc-cceeeeccccCccce
Confidence 9999999998743 33344 46666 99999988774 478877 6669999999853332 2222222 33599
Q ss_pred EEEEccCCCeEEEEEeeCccc
Q 036953 228 AVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 228 sVafSPdG~~LlaS~s~~dLr 248 (792)
++..|++.. ++++++...+.
T Consensus 1309 al~VH~hap-iiAsGs~q~ik 1328 (1387)
T KOG1517|consen 1309 ALTVHEHAP-IIASGSAQLIK 1328 (1387)
T ss_pred eeeeccCCC-eeeecCcceEE
Confidence 999999998 55555433333
No 225
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.76 E-value=2.9e-08 Score=103.68 Aligned_cols=137 Identities=18% Similarity=0.231 Sum_probs=110.9
Q ss_pred cEEEEEeCCCeEEEEeccCC--------------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC--cE--EE
Q 036953 70 RGLVSWVEAESLRHLSAKYC--------------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG--NC--LK 131 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~--------------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg--k~--v~ 131 (792)
..++.+-+++.+.+||..++ ....|..+|.++.|.+.-..=++|+.+..+..|+++.. .+ -.
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~ 245 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRK 245 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccc
Confidence 34566678888889988764 23579999999999986666688888888999998643 21 11
Q ss_pred EecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcC-CeEEEEEC
Q 036953 132 VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASG-HKLYIWPY 207 (792)
Q Consensus 132 ~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSd-d~V~IWDl 207 (792)
.+.-..-.|..+.+-| |+++++|++.|+.||+|..++.+++..+. |...|++++|+|+..++|.++. .+|.+|++
T Consensus 246 e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 246 EITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 1222345688899999 99999999999999999999999999985 8899999999999999999994 45999986
No 226
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.74 E-value=1.6e-06 Score=98.79 Aligned_cols=192 Identities=15% Similarity=0.160 Sum_probs=115.5
Q ss_pred cCCCCCCeEEEEEcCCCCEEE---EEECC--CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-----CC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLA---STHGD--HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-----DH 160 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~La---SGS~D--GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-----Dg 160 (792)
+......+.+-+|||||+.++ +...+ ..|.+.++.+++.... ....+.....+|+| |++.|+..+. |.
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSP-DG~~Laf~s~~~g~~di 257 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSP-RKKLLAFISDRYGNPDL 257 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECC-CCCEEEEEECCCCCcce
Confidence 444455677889999998532 33333 3577888887764333 33445556789999 8877776543 23
Q ss_pred eEEEEECCC---CcEEEEecc-CCCeeEEEEcCCCcEEEEEcC--Ce--EEEEECCCCCcccCCeEEecCCCCeEEEEEc
Q 036953 161 EVRLWDANT---SECIGSCDF-YRPIASIAFHAEGELLAVASG--HK--LYIWPYNNKEEASSPIIVLKTRRSLRAVHFH 232 (792)
Q Consensus 161 tVrLWDl~t---g~~v~t~~h-~s~V~sVafSpdG~~LasgSd--d~--V~IWDlrt~~~~~~~~~~~~h~~sVtsVafS 232 (792)
.+.+||+.. ++....... .......+|+|||+.|+..++ +. |+++++...... ...+......+....|+
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~--~~~lt~~~~~~~~p~wS 335 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS--PRLLTKKYRNSSCPAWS 335 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc--eEEeccCCCCccceeEC
Confidence 345577765 233333332 234467899999998887662 33 666666432211 12233344567789999
Q ss_pred cCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEc
Q 036953 233 PHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQH 312 (792)
Q Consensus 233 PdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~ 312 (792)
|||+.|+.+..... ...+.+++...+....+... ...+....++|||+.|++.
T Consensus 336 PDG~~Laf~~~~~g--------------------~~~I~v~dl~~g~~~~Lt~~-------~~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 336 PDGKKIAFCSVIKG--------------------VRQICVYDLATGRDYQLTTS-------PENKESPSWAIDSLHLVYS 388 (428)
T ss_pred CCCCEEEEEEcCCC--------------------CcEEEEEECCCCCeEEccCC-------CCCccceEECCCCCEEEEE
Confidence 99998887763211 01245555555655544432 2234557889999998844
Q ss_pred c
Q 036953 313 A 313 (792)
Q Consensus 313 ~ 313 (792)
.
T Consensus 389 ~ 389 (428)
T PRK01029 389 A 389 (428)
T ss_pred E
Confidence 3
No 227
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.74 E-value=1.3e-07 Score=101.19 Aligned_cols=138 Identities=18% Similarity=0.288 Sum_probs=103.1
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-c
Q 036953 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-F 178 (792)
Q Consensus 100 sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h 178 (792)
-+.|||+|+++|+.+.- .+.|-|..+-+..+.|.. -..|.-+.|..+...+|.....|+.|.+|++...+--..++ .
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 45799999999999877 677888877665544442 34567788988344445555688899999999888777774 6
Q ss_pred CCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 179 YRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 179 ~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
..++.+++|+|||+.|...+ +-+|.+|.+.+.+... ....+..+..++|+|||++.+....
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----LPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----ecccccCceeEEECCCCceeeeeec
Confidence 77899999999997776666 5569999999887432 2223445688999999997665544
No 228
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=4.6e-07 Score=93.99 Aligned_cols=136 Identities=11% Similarity=0.142 Sum_probs=107.2
Q ss_pred CCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC--------
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG-------- 135 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g-------- 135 (792)
....++....|+.+..||.++++ +.+|.+.|.++.--.....+++|+.||+++|||+++++++..+..
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lR 204 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLR 204 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcC
Confidence 45566777789999999999874 689999999999855556799999999999999999999887752
Q ss_pred -CC-CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCC
Q 036953 136 -HR-RTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNN 209 (792)
Q Consensus 136 -H~-~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt 209 (792)
|. ..|.+++. +.+++++|+ ...+.+|.++..+++..|....++..+.|.. +.++.++ .+.|.-|.+..
T Consensus 205 p~~g~wigala~---~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 205 PDWGKWIGALAV---NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cccCceeEEEec---cCceEEecC-CCceeEEeccCCCceEEEecccceeEeeeec--ceEEEeccccceeeeeecc
Confidence 22 34566665 457777665 5579999999999999999999999999854 3555555 44599998754
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=3.8e-07 Score=99.63 Aligned_cols=185 Identities=17% Similarity=0.163 Sum_probs=139.7
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCC-----c--CCCCCCeEEEEEcC-CCCEEEEEECC--CeEEEEECCCCcEEEEecCC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCP-----L--VPPPRSTIAAAFSP-DGRTLASTHGD--HTVKIIDCQTGNCLKVLSGH 136 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~-----L--~gH~~~V~sLafSP-DG~~LaSGS~D--GtVrIWDl~tgk~v~~L~gH 136 (792)
..+..|+++..++.+.+|..+.+- + .....++..|.-++ +...+++|+.. ..++|||+...+.++.-+.-
T Consensus 113 ~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNv 192 (412)
T KOG3881|consen 113 LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNV 192 (412)
T ss_pred hcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCC
Confidence 356789999999999999987442 1 12235577777777 44566678887 78999999887655543321
Q ss_pred ---------CCCcEEEEEccCC--CCEEEEEeCCCeEEEEECCCC-cEEEEec-cCCCeeEEEEcCCCcEEEEEcCC-eE
Q 036953 137 ---------RRTPWVVRFHPLR--SEILASGSLDHEVRLWDANTS-ECIGSCD-FYRPIASIAFHAEGELLAVASGH-KL 202 (792)
Q Consensus 137 ---------~~~VtsVafSP~d--g~lLaSgS~DgtVrLWDl~tg-~~v~t~~-h~s~V~sVafSpdG~~LasgSdd-~V 202 (792)
.-.++++.|-+ + ...|++++.-+.|++||.+.+ +++..|. .+.+++++...|++++++++... .+
T Consensus 193 pnD~L~LrVPvW~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 193 PNDRLGLRVPVWITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred CCccccceeeeeeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence 12467789988 5 789999999999999999874 6888886 57899999999999999999844 49
Q ss_pred EEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCce
Q 036953 203 YIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSM 254 (792)
Q Consensus 203 ~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~ 254 (792)
..||+++++... ....+..+.|+++..||..++++.++-+..+|..|...
T Consensus 272 ~~FD~r~~kl~g--~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 272 AKFDLRGGKLLG--CGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred heecccCceeec--cccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 999999988543 22455678999999999999655555566677655443
No 230
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.70 E-value=6.4e-06 Score=89.71 Aligned_cols=167 Identities=15% Similarity=0.220 Sum_probs=117.2
Q ss_pred CCeEEEEeccCC-------CcCCCCCCeEEEEEcCCCCEEEEEECC---CeEEEEECCC--CcEE--EEecCCCCCcEEE
Q 036953 78 AESLRHLSAKYC-------PLVPPPRSTIAAAFSPDGRTLASTHGD---HTVKIIDCQT--GNCL--KVLSGHRRTPWVV 143 (792)
Q Consensus 78 d~sIrvWd~~t~-------~L~gH~~~V~sLafSPDG~~LaSGS~D---GtVrIWDl~t--gk~v--~~L~gH~~~VtsV 143 (792)
++-|.+|++.+. ++......++-|+|+|+.++|.++..+ |.|.-|.++. |+.. ........+...+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 556777776532 345677889999999999999998654 6677776654 4422 1112223344789
Q ss_pred EEccCCCCEEEEEeC-CCeEEEEECCC-Cc---EEEEeccCCC----------eeEEEEcCCCcEEEEEc--CCeEEEEE
Q 036953 144 RFHPLRSEILASGSL-DHEVRLWDANT-SE---CIGSCDFYRP----------IASIAFHAEGELLAVAS--GHKLYIWP 206 (792)
Q Consensus 144 afSP~dg~lLaSgS~-DgtVrLWDl~t-g~---~v~t~~h~s~----------V~sVafSpdG~~LasgS--dd~V~IWD 206 (792)
++++ ++++++++.. -+.|.++-+++ |. .+..+.|... +-...+.|++++|++.. .|+|.+|+
T Consensus 95 svd~-~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~ 173 (346)
T COG2706 95 SVDE-DGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYD 173 (346)
T ss_pred EECC-CCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEE
Confidence 9999 8899998874 57899999976 32 3344445444 77889999999999987 67799999
Q ss_pred CCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 207 YNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 207 lrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+..++..............-+.+.|||++++..+.+++.
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~ 212 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN 212 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC
Confidence 997665432222224445567899999999888777644
No 231
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.69 E-value=1.7e-06 Score=99.19 Aligned_cols=181 Identities=13% Similarity=0.098 Sum_probs=111.1
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEE-EECCCe
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLAS-THGDHT 118 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaS-GS~DGt 118 (792)
.+....|+|+++.++.... .++. ..|.+|+..+++ +..........+|+|||+.|+. .+.++.
T Consensus 219 ~~~~p~wSPDG~~La~~s~----~~g~---------~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 219 PLMSPAWSPDGRKLAYVSF----ENRK---------AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred cccCceECCCCCEEEEEEe----cCCC---------cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCC
Confidence 4567788888876544310 0111 234455544332 2222233457899999998875 455664
Q ss_pred --EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CC--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcE
Q 036953 119 --VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DH--EVRLWDANTSECIGSCDFYRPIASIAFHAEGEL 193 (792)
Q Consensus 119 --VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-Dg--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~ 193 (792)
|++||+.+++. ..+..+........|+| |++.|+..+. ++ .|.++|+.+++..............+|+|||++
T Consensus 286 ~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~ 363 (448)
T PRK04792 286 PEIYVVDIATKAL-TRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRS 363 (448)
T ss_pred eEEEEEECCCCCe-EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCE
Confidence 77889887764 44555666677899999 7777665543 33 467778887765443222233445789999999
Q ss_pred EEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 194 LAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 194 LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
|+..+. + .|.++|+.+++... .... .......|+|||+.++.+..
T Consensus 364 l~~~~~~~g~~~I~~~dl~~g~~~~----lt~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 364 MIMVNRTNGKFNIARQDLETGAMQV----LTST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred EEEEEecCCceEEEEEECCCCCeEE----ccCC-CCCCCceECCCCCEEEEEEe
Confidence 887652 2 27778887765321 1111 12234579999998877664
No 232
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.65 E-value=5.2e-07 Score=105.26 Aligned_cols=211 Identities=14% Similarity=0.155 Sum_probs=143.5
Q ss_pred CCCceEeeeccccee--eC-------CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC--
Q 036953 22 RRRARNVSRLLAHRE--IS-------PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP-- 90 (792)
Q Consensus 22 ~s~~r~V~~l~~~re--ls-------~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~-- 90 (792)
..+.+-+|++..... .+ .+...+..+.|..+.. . ..+++.+.|+.|..|+.+.-.
T Consensus 263 y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~-------------~-~~f~s~ssDG~i~~W~~~~l~~P 328 (555)
T KOG1587|consen 263 YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEH-------------N-TEFFSLSSDGSICSWDTDMLSLP 328 (555)
T ss_pred cCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCC-------------C-CceEEEecCCcEeeeeccccccc
Confidence 566778888876655 22 2333455666655321 1 457788889999999775221
Q ss_pred -----c--C-------CCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCC---Cc-----EEEEecCCCCCcEEEEEcc
Q 036953 91 -----L--V-------PPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQT---GN-----CLKVLSGHRRTPWVVRFHP 147 (792)
Q Consensus 91 -----L--~-------gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~t---gk-----~v~~L~gH~~~VtsVafSP 147 (792)
+ . .-...+++++|.+ +...|+.|+.+|.|.--+-.. .. ....+..|.++|+.+.++|
T Consensus 329 ~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nP 408 (555)
T KOG1587|consen 329 VEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNP 408 (555)
T ss_pred hhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCC
Confidence 1 1 1223588999999 788999999999987733222 11 1234556889999999999
Q ss_pred CCCCEEEEEeCCCeEEEEECC-CCcEEEEec-cCCCeeEEEEcCCCcEE-EEEc-CCeEEEEECCCCCcccCCeEEecCC
Q 036953 148 LRSEILASGSLDHEVRLWDAN-TSECIGSCD-FYRPIASIAFHAEGELL-AVAS-GHKLYIWPYNNKEEASSPIIVLKTR 223 (792)
Q Consensus 148 ~dg~lLaSgS~DgtVrLWDl~-tg~~v~t~~-h~s~V~sVafSpdG~~L-asgS-dd~V~IWDlrt~~~~~~~~~~~~h~ 223 (792)
...+++++++ |-+|+||.-. ...++..+. +...+.+++|||....+ +++. ++.|.|||+.......... ...+.
T Consensus 409 F~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s-~~~~~ 486 (555)
T KOG1587|consen 409 FYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS-QKVCS 486 (555)
T ss_pred Cccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc-ccccc
Confidence 8888888887 9999999987 667776664 55669999999998654 4444 4559999998776543122 22235
Q ss_pred CCeEEEEEccCCCeEEEEEeeCccc
Q 036953 224 RSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
...+.+.|++.|+.++++...+++.
T Consensus 487 ~~l~~~~~s~~g~~lavGd~~G~~~ 511 (555)
T KOG1587|consen 487 PALTRVRWSPNGKLLAVGDANGTTH 511 (555)
T ss_pred cccceeecCCCCcEEEEecCCCcEE
Confidence 6677888999899666555444333
No 233
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.64 E-value=1.9e-06 Score=104.42 Aligned_cols=187 Identities=12% Similarity=0.140 Sum_probs=130.8
Q ss_pred EeeCCCceEee-------cCCCceeecCCcEEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEEcCCCCE
Q 036953 48 QWVDASKLKTC-------GPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAFSPDGRT 109 (792)
Q Consensus 48 aWspd~~lla~-------G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLafSPDG~~ 109 (792)
.|.+.|.+++. .......+..+-.+++++.|+++|+|+.+.- ++..-...+.++...+.+..
T Consensus 1033 gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1033 GWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 47777766432 1122223345577899999999999998632 12224566888999999999
Q ss_pred EEEEECCCeEEEEECCCCc-------EEEEecCCC-CC-cEEEEEccCCCC-EEEEEeCCCeEEEEECCCCcEEEEec--
Q 036953 110 LASTHGDHTVKIIDCQTGN-------CLKVLSGHR-RT-PWVVRFHPLRSE-ILASGSLDHEVRLWDANTSECIGSCD-- 177 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tgk-------~v~~L~gH~-~~-VtsVafSP~dg~-lLaSgS~DgtVrLWDl~tg~~v~t~~-- 177 (792)
+|.++.||.|.+.+++..+ +.+....+. +. |...+|...... .++.+...+.|..||++.....+.++
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 9999999999999987521 122222222 22 333344443344 78888889999999999877666664
Q ss_pred -cCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 178 -FYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 178 -h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
..+.|++++.+|.+.+++.|.. |.+-+||++-...+. .....+..+|+.|..+|...
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~--sw~~P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL--SWEHPARAPIRHVWLCPTYP 1251 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceee--cccCcccCCcceEEeeccCC
Confidence 4578999999999999999985 459999998776442 22344567888888888655
No 234
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.64 E-value=3.1e-06 Score=94.90 Aligned_cols=135 Identities=16% Similarity=0.192 Sum_probs=95.7
Q ss_pred CEEE-EEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEE
Q 036953 108 RTLA-STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIA 186 (792)
Q Consensus 108 ~~La-SGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVa 186 (792)
++++ +-..++.|.|.|..+.+.+..+.........+.|+| |+++++.++.|+.|.++|+.+++.+.++.......+++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEE
Confidence 3444 445689999999999999999986554445578999 99999999999999999999999999998888889999
Q ss_pred EcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEE-ec---CCCCeEEEEEccCCCeEEEEEe
Q 036953 187 FHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIV-LK---TRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 187 fSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~-~~---h~~sVtsVafSPdG~~LlaS~s 243 (792)
+++||++++++. .+.+.++|.++.+..+..... .. ....+..+..+|....++++-.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk 147 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK 147 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc
Confidence 999999999887 577999999988755411100 00 2346778888888886666543
No 235
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.62 E-value=3.2e-07 Score=97.28 Aligned_cols=155 Identities=15% Similarity=0.072 Sum_probs=116.7
Q ss_pred CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECC-CCcEEEE-ecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 90 PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQ-TGNCLKV-LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 90 ~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~-tgk~v~~-L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
..++|.-.+..+.|+- +.+.+.+|+.|+.+.-||++ .++.+.. .+-|...|.++.-+|.++.+++||+.|-.|++||
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~D 239 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLD 239 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeee
Confidence 5678999999999997 67889999999999999998 4444444 4568899999999987889999999999999999
Q ss_pred CCC-CcEEEEeccCCCeeEEEEcCCC--cEEEEEcCCeEEEEECCCCCccc--CCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 167 ANT-SECIGSCDFYRPIASIAFHAEG--ELLAVASGHKLYIWPYNNKEEAS--SPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 167 l~t-g~~v~t~~h~s~V~sVafSpdG--~~LasgSdd~V~IWDlrt~~~~~--~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
.++ ++++..-...+.|+.+.++|.- +.|+++-.++.+|-+........ .......|.+-++.-+|... ..++++
T Consensus 240 tRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~-~~~lAT 318 (339)
T KOG0280|consen 240 TRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK-DSFLAT 318 (339)
T ss_pred hhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccc-cceeee
Confidence 995 7888877778999999999964 45666666678888886655331 01122335555666667443 335666
Q ss_pred EeeC
Q 036953 242 AEVN 245 (792)
Q Consensus 242 ~s~~ 245 (792)
|+.+
T Consensus 319 CsFY 322 (339)
T KOG0280|consen 319 CSFY 322 (339)
T ss_pred eecc
Confidence 6544
No 236
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.62 E-value=1.7e-06 Score=98.65 Aligned_cols=168 Identities=15% Similarity=0.090 Sum_probs=135.5
Q ss_pred EEEEEeCCCeEEEEeccCCCcC-------CCCCCeEEEEEc--------------------CCCCEEEEEECCCeEEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYCPLV-------PPPRSTIAAAFS--------------------PDGRTLASTHGDHTVKIID 123 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L~-------gH~~~V~sLafS--------------------PDG~~LaSGS~DGtVrIWD 123 (792)
.+.....|+.+|+|+...+++. .-.+...+..|. -|-..++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 3444467888999988766432 123344455553 1334677888899999999
Q ss_pred CCCCcEEEEec--CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcCC
Q 036953 124 CQTGNCLKVLS--GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVASGH 200 (792)
Q Consensus 124 l~tgk~v~~L~--gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSdd 200 (792)
...++....+. +|.+.|.++.++. +-..|.|++.|+.+..|+...++.+..+. ....+.+++.+|||+.|++++ +
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-~ 164 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-R 164 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-c
Confidence 99999888876 6999999999998 88999999999999999999999888885 667789999999999999988 4
Q ss_pred eEEEEECCCCCcccCCeEEecCCCCeEEEEEccC-----CCeEEEEEe
Q 036953 201 KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPH-----AAPFVLTAE 243 (792)
Q Consensus 201 ~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPd-----G~~LlaS~s 243 (792)
.|++||+++.+.. ..+.+|.+.|+++.|--+ |.+++++..
T Consensus 165 ~ik~~~~~~kevv---~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 165 QIKVLDIETKEVV---ITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA 209 (541)
T ss_pred eEEEEEccCceEE---EEecCCCcceEEEEEEEeccccccceeeeccc
Confidence 5999999998854 367789999999999887 788887665
No 237
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.61 E-value=2.3e-07 Score=110.89 Aligned_cols=139 Identities=19% Similarity=0.216 Sum_probs=114.7
Q ss_pred CcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE-EecCCCCCcEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK-VLSGHRRTPWVV 143 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~-~L~gH~~~VtsV 143 (792)
...+.++.--+.|.+|+.... .+.+|.+.|..+.|+-||.++++.|.|.++++|++.+.+... ..-+|...|+.+
T Consensus 145 ~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~ 224 (967)
T KOG0974|consen 145 ELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWAC 224 (967)
T ss_pred EEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEE
Confidence 345666677788899987633 378999999999999999999999999999999999988665 556899999999
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-c-cCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCC
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSC-D-FYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKE 211 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~-h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~ 211 (792)
+|.| + .++|++.|.+.++|+.+..+.. .+ + ....+..++.+++...++++++| ++++||+....
T Consensus 225 ~~~~-n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 225 CFLP-N--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred Eecc-c--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 9998 4 9999999999999977654433 44 3 34679999999888888888854 59999986543
No 238
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.59 E-value=8.1e-05 Score=81.32 Aligned_cols=216 Identities=13% Similarity=0.085 Sum_probs=141.9
Q ss_pred CCCCceEeeecc-cceeeCC-----CCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC-CCeEEEEeccCCCcCC
Q 036953 21 LRRRARNVSRLL-AHREISP-----KTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE-AESLRHLSAKYCPLVP 93 (792)
Q Consensus 21 ~~s~~r~V~~l~-~~rels~-----~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~-d~sIrvWd~~t~~L~g 93 (792)
+.++.+.+|++. ...+++. .....+-++|+++.+.+=++.... ..++...+.+.. ++.+...+.... .+
T Consensus 13 ~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~--~~ggvaay~iD~~~G~Lt~ln~~~~--~g 88 (346)
T COG2706 13 RESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPG--EEGGVAAYRIDPDDGRLTFLNRQTL--PG 88 (346)
T ss_pred cCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecC--CcCcEEEEEEcCCCCeEEEeecccc--CC
Confidence 458889999887 4444442 223567789999986543321110 123333344442 366666654422 22
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCC-CcEE--EEecCCCCC----------cEEEEEccCCCCEEEEEeC-
Q 036953 94 PPRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQT-GNCL--KVLSGHRRT----------PWVVRFHPLRSEILASGSL- 158 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~-DGtVrIWDl~t-gk~v--~~L~gH~~~----------VtsVafSP~dg~lLaSgS~- 158 (792)
.+.+-++++++|++++++.. .|.|.++-++. |... ..+..|.+. +....|.| ++++|+++..
T Consensus 89 --~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG 165 (346)
T COG2706 89 --SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLG 165 (346)
T ss_pred --CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecC
Confidence 22378999999999999876 58899998865 4321 122236555 88899999 9899998863
Q ss_pred CCeEEEEECCCCcEEEE----eccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCC-cccCCe------EEecCCCC
Q 036953 159 DHEVRLWDANTSECIGS----CDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKE-EASSPI------IVLKTRRS 225 (792)
Q Consensus 159 DgtVrLWDl~tg~~v~t----~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~-~~~~~~------~~~~h~~s 225 (792)
--.|.+|++..++.... +......+-|.|||++++..+.. +++|-+|..+... ...... ..+....+
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 23589999998765433 24556778999999999888877 6779999987741 111011 11224567
Q ss_pred eEEEEEccCCCeEEEEEe
Q 036953 226 LRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 226 VtsVafSPdG~~LlaS~s 243 (792)
..++..++||++|.++..
T Consensus 246 ~aaIhis~dGrFLYasNR 263 (346)
T COG2706 246 AAAIHISPDGRFLYASNR 263 (346)
T ss_pred eeEEEECCCCCEEEEecC
Confidence 889999999998888764
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=8.5e-07 Score=100.61 Aligned_cols=178 Identities=15% Similarity=0.168 Sum_probs=137.5
Q ss_pred CCceeecCCcEEEEEeCCCeEEEEeccCCCc----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec--
Q 036953 61 SDSSVRDAKRGLVSWVEAESLRHLSAKYCPL----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-- 134 (792)
Q Consensus 61 ~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-- 134 (792)
.+.........|+.+..+..+.-+++..+.+ .-....++++..++...+|++|+.||.|..||..+...+..+.
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 4444444566788888888888888887754 3345789999999988899999999999999998876655553
Q ss_pred ----CCCC-----CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecc--CCCeeEEEEcCC--CcEEEEEcCCe
Q 036953 135 ----GHRR-----TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF--YRPIASIAFHAE--GELLAVASGHK 201 (792)
Q Consensus 135 ----gH~~-----~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h--~s~V~sVafSpd--G~~LasgSdd~ 201 (792)
.|.+ .|+++.|+. ++-.++.|+.+|.|.+||+++.+++..-.| .-+|..+.|.+. ++.+++.....
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~ 295 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRI 295 (703)
T ss_pred cccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHH
Confidence 2333 499999997 799999999999999999999999887765 457889999765 45666665555
Q ss_pred EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 202 LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 202 V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
++|||-.+++.. ........++.+|+-|++-.++++-.
T Consensus 296 ~kiWd~~~Gk~~----asiEpt~~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 296 LKIWDECTGKPM----ASIEPTSDLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred hhhcccccCCce----eeccccCCcCceeeecCCceEEEecC
Confidence 999999998843 34444556999999998885555443
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.58 E-value=9.6e-05 Score=81.83 Aligned_cols=149 Identities=15% Similarity=0.223 Sum_probs=99.3
Q ss_pred CCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCC-CcEEEE---ec----------CCCCCcEEEEEccCCCCEEEEEe-C
Q 036953 95 PRSTIAAAFSPDGRTLASTHG-DHTVKIIDCQT-GNCLKV---LS----------GHRRTPWVVRFHPLRSEILASGS-L 158 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~-DGtVrIWDl~t-gk~v~~---L~----------gH~~~VtsVafSP~dg~lLaSgS-~ 158 (792)
......++++|++++|+++.. +|.|.++++.. +..... +. .......++.|+| ++++++... .
T Consensus 86 g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG 164 (345)
T PF10282_consen 86 GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLG 164 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETT
T ss_pred CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecC
Confidence 345678999999999999875 89999999986 433222 21 1224567899999 888777764 3
Q ss_pred CCeEEEEECCCCc--EEE----EeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCcccCCeEEec-------CC
Q 036953 159 DHEVRLWDANTSE--CIG----SCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEASSPIIVLK-------TR 223 (792)
Q Consensus 159 DgtVrLWDl~tg~--~v~----t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~-------h~ 223 (792)
...|.+|++.... ... .+........+.|+|+++++++.. ++.|.+|++.............. ..
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGE 244 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSS
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccccccc
Confidence 4479999987654 322 234667789999999999988877 56699998872221100111111 12
Q ss_pred CCeEEEEEccCCCeEEEEEee
Q 036953 224 RSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 224 ~sVtsVafSPdG~~LlaS~s~ 244 (792)
.....++++|||++|+++...
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~ 265 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRG 265 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECT
T ss_pred CCceeEEEecCCCEEEEEecc
Confidence 367899999999999888753
No 241
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.57 E-value=3.3e-06 Score=89.80 Aligned_cols=136 Identities=14% Similarity=0.211 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcE--EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC-CCcEEE
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC--LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN-TSECIG 174 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~--v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~-tg~~v~ 174 (792)
..++.|++.+..++++-.+|.+.+-+...... ++..++|.-.++-..|+..+.+++.+|+.|+.+..||++ .++.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~ 203 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW 203 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence 45788999899999999999999666555443 347889999999999998888999999999999999999 344444
Q ss_pred E--eccCCCeeEEEEcC-CCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 175 S--CDFYRPIASIAFHA-EGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 175 t--~~h~s~V~sVafSp-dG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
. ..|...|.+|.-+| +..+|++|+ |+.|++||.|.-.+ |.....-.+.|..+.++|.-.
T Consensus 204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k---Pl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK---PLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC---ccccCccccceEEEEecchhh
Confidence 4 24888999998775 467999999 55699999986553 333334457899999999644
No 242
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.55 E-value=1.5e-07 Score=104.54 Aligned_cols=160 Identities=17% Similarity=0.199 Sum_probs=127.1
Q ss_pred EEEEeCCCeEEEEeccCCCcCC--CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCC
Q 036953 72 LVSWVEAESLRHLSAKYCPLVP--PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLR 149 (792)
Q Consensus 72 L~S~s~d~sIrvWd~~t~~L~g--H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~d 149 (792)
++.....+-+.+||-....+.. -...|..+.|-|.--.|++++..|.++.-|+.+|+.+..+..-.+.+..++-+| -
T Consensus 184 ~~AVAQK~y~yvYD~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP-~ 262 (545)
T KOG1272|consen 184 FFAVAQKKYVYVYDNNGTELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP-Y 262 (545)
T ss_pred HHHhhhhceEEEecCCCcEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC-c
Confidence 3333444455555544222211 124588999999888899999999999999999999999988888999999999 7
Q ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeE
Q 036953 150 SEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLR 227 (792)
Q Consensus 150 g~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVt 227 (792)
...+-+|...|+|.+|.....+++..+ .|.++|.+|+++++|.|+++++ |..++|||++...... ... ......
T Consensus 263 NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~---t~~-tp~~a~ 338 (545)
T KOG1272|consen 263 NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH---TYR-TPHPAS 338 (545)
T ss_pred cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc---eee-cCCCcc
Confidence 789999999999999999998887665 6999999999999999999999 5669999999887443 222 245677
Q ss_pred EEEEccCCC
Q 036953 228 AVHFHPHAA 236 (792)
Q Consensus 228 sVafSPdG~ 236 (792)
.++||..|-
T Consensus 339 ~ls~Sqkgl 347 (545)
T KOG1272|consen 339 NLSLSQKGL 347 (545)
T ss_pred ccccccccc
Confidence 888988775
No 243
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.55 E-value=7.8e-06 Score=91.68 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=113.7
Q ss_pred EEEeCCCeEEEEeccCCCc----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC
Q 036953 73 VSWVEAESLRHLSAKYCPL----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL 148 (792)
Q Consensus 73 ~S~s~d~sIrvWd~~t~~L----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~ 148 (792)
+.-..++.+.+.|..+.+. ......-..+.|+|||+++++++.|+.|.++|+.+++.+..++.- ....++++++
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~- 87 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSP- 87 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE---
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcC-
Confidence 3444678888888876542 222222345789999999999999999999999999999998743 4568899999
Q ss_pred CCCEEEEEe-CCCeEEEEECCCCcEEEEec--------cCCCeeEEEEcCCCcEEEEEc-C-CeEEEEECCCCCcccCCe
Q 036953 149 RSEILASGS-LDHEVRLWDANTSECIGSCD--------FYRPIASIAFHAEGELLAVAS-G-HKLYIWPYNNKEEASSPI 217 (792)
Q Consensus 149 dg~lLaSgS-~DgtVrLWDl~tg~~v~t~~--------h~s~V~sVafSpdG~~LasgS-d-d~V~IWDlrt~~~~~~~~ 217 (792)
|+++++.+. .++++.++|.++.++++.+. ..+.+..+..++....+++.- + +.|.+.|+...+... .
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~--~ 165 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK--V 165 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE--E
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc--e
Confidence 888887665 68999999999999998873 234677888888888666665 3 558888887764322 2
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 218 IVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 218 ~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.............|+|++++++++..
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~ 191 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAAN 191 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEG
T ss_pred eeecccccccccccCcccceeeeccc
Confidence 33445567788999999998877653
No 244
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.54 E-value=5e-05 Score=84.06 Aligned_cols=147 Identities=15% Similarity=0.213 Sum_probs=101.3
Q ss_pred CCeEEEEEcCCCCEEEEEEC----CCeEEEEECCCC--c--EEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHG----DHTVKIIDCQTG--N--CLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRLWD 166 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~----DGtVrIWDl~tg--k--~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrLWD 166 (792)
.....++++|++++|++... ++.|..|++... + .+............++++| ++++|+.+. .+++|.+++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEEE
Confidence 44667899999999999877 568999988754 3 2333332345567799999 888888887 589999999
Q ss_pred CCC-CcEEEE---ec-----------cCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCc-cc-CCeEEecCCCCeE
Q 036953 167 ANT-SECIGS---CD-----------FYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEE-AS-SPIIVLKTRRSLR 227 (792)
Q Consensus 167 l~t-g~~v~t---~~-----------h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~-~~-~~~~~~~h~~sVt 227 (792)
+.. +..... +. ......++.|+|+|+++++.. .++|++|++..... .. ...........-+
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR 195 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR 195 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc
Confidence 987 433222 21 234577999999999998876 56799999977652 21 0112233455678
Q ss_pred EEEEccCCCeEEEEEe
Q 036953 228 AVHFHPHAAPFVLTAE 243 (792)
Q Consensus 228 sVafSPdG~~LlaS~s 243 (792)
.+.|+|+++++++.+.
T Consensus 196 h~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 196 HLAFSPDGKYAYVVNE 211 (345)
T ss_dssp EEEE-TTSSEEEEEET
T ss_pred EEEEcCCcCEEEEecC
Confidence 9999999998888775
No 245
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.48 E-value=2.8e-05 Score=88.63 Aligned_cols=187 Identities=12% Similarity=0.078 Sum_probs=116.9
Q ss_pred CeEEEEEcCCCCE-EEEEEC---CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEE-EEeCC--CeEEEEECCC
Q 036953 97 STIAAAFSPDGRT-LASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILA-SGSLD--HEVRLWDANT 169 (792)
Q Consensus 97 ~V~sLafSPDG~~-LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLa-SgS~D--gtVrLWDl~t 169 (792)
......|+|||+. ++..+. +..|.++|+.+++...... ..+......|+| |++.++ +.+.+ ..|.++|+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence 6778999999985 665444 3568999998887655443 555667788999 776554 44444 4688889888
Q ss_pred CcEEEEeccCCCeeEEEEcCCCcEEEEEcCC----eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 170 SECIGSCDFYRPIASIAFHAEGELLAVASGH----KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 170 g~~v~t~~h~s~V~sVafSpdG~~LasgSdd----~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
++...............|+|||+.|+..++. .|+++|+.+++... ...... . ...|+|||+.++.+....
T Consensus 267 g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r---lt~~g~-~--~~~~SPDG~~Ia~~~~~~ 340 (419)
T PRK04043 267 KTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ---VVFHGK-N--NSSVSTYKNYIVYSSRET 340 (419)
T ss_pred CcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe---CccCCC-c--CceECCCCCEEEEEEcCC
Confidence 7754433333334456899999988877743 39999998776432 111111 1 248999999998877432
Q ss_pred ccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEEEcc
Q 036953 246 DLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHA 313 (792)
Q Consensus 246 dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~ 313 (792)
+-. +.. ....+++.....+..+.+... .......|+|||+.|++..
T Consensus 341 ~~~-------------~~~-~~~~I~v~d~~~g~~~~LT~~--------~~~~~p~~SPDG~~I~f~~ 386 (419)
T PRK04043 341 NNE-------------FGK-NTFNLYLISTNSDYIRRLTAN--------GVNQFPRFSSDGGSIMFIK 386 (419)
T ss_pred Ccc-------------cCC-CCcEEEEEECCCCCeEECCCC--------CCcCCeEECCCCCEEEEEE
Confidence 100 000 011344445455555444432 1122477999999888443
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.47 E-value=3.9e-06 Score=100.70 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=131.4
Q ss_pred CcEEEEEeCCCeEEEEeccCCCc---CCCCCC-----eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCc
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPL---VPPPRS-----TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP 140 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L---~gH~~~-----V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V 140 (792)
..+++.+...+.+-+|+.+...+ ..+... ..-+.++++.-++++|+.-+.|.+|+....+.-..+.+|.+.|
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 34566666777888888765421 122222 2234456677789999999999999987443333588999999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE--EeccCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCe
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDANTSECIG--SCDFYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPI 217 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~--t~~h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~ 217 (792)
..+.|+. |+.+++++|.|.++|+|++.+++... -|+|...+..++|+|. .+++++.+ ..++|+.+..+..
T Consensus 179 F~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~---- 251 (967)
T KOG0974|consen 179 FSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLE---- 251 (967)
T ss_pred EEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceeh----
Confidence 9999998 99999999999999999999987654 4689999999999998 88888844 5999977655432
Q ss_pred EEecC-CCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 218 IVLKT-RRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 218 ~~~~h-~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
....| .+.|..++.+++...+++.+.+..++.++.
T Consensus 252 ~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 252 VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 23333 567899999887776666666666666554
No 247
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.45 E-value=2.5e-06 Score=91.62 Aligned_cols=143 Identities=17% Similarity=0.226 Sum_probs=104.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE---------------------------------------------
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL--------------------------------------------- 130 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v--------------------------------------------- 130 (792)
-++..+.|+|.+++|+.|+.|+.++|-|--+-+..
T Consensus 211 lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~ 290 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWE 290 (447)
T ss_pred cceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccc
Confidence 35889999999999999999998887553211100
Q ss_pred ---------------EEec------CCCCCcEEEEEccCCCCEEEEEeCC--CeEEEEECCCCcEEEEeccCCCeeEEEE
Q 036953 131 ---------------KVLS------GHRRTPWVVRFHPLRSEILASGSLD--HEVRLWDANTSECIGSCDFYRPIASIAF 187 (792)
Q Consensus 131 ---------------~~L~------gH~~~VtsVafSP~dg~lLaSgS~D--gtVrLWDl~tg~~v~t~~h~s~V~sVaf 187 (792)
..++ .-.-.+.-++|++ |..+++|-... +.+-+||++..+.-..+....+|....|
T Consensus 291 ~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~W 369 (447)
T KOG4497|consen 291 ESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEW 369 (447)
T ss_pred cchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEe
Confidence 0011 1122456699999 88888875432 4689999999888777888999999999
Q ss_pred cCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 188 HAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 188 SpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+|....|+.+.+ .++++|......... .....-.|..++|+.+|.+++..++
T Consensus 370 dP~~prL~vctg~srLY~W~psg~~~V~----vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 370 DPGRPRLVVCTGKSRLYFWAPSGPRVVG----VPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred CCCCceEEEEcCCceEEEEcCCCceEEe----cCCCCceeeeEEecCCCcEEEEEcC
Confidence 999987777764 449999887654332 2233478999999999998887765
No 248
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.44 E-value=1.3e-06 Score=94.26 Aligned_cols=202 Identities=13% Similarity=0.171 Sum_probs=132.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-Cc----EEEEecCCC------------CCcEEEEEcc-CCCCEEEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT-GN----CLKVLSGHR------------RTPWVVRFHP-LRSEILASG 156 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t-gk----~v~~L~gH~------------~~VtsVafSP-~dg~lLaSg 156 (792)
.+-|.++.|+.+|.+|++|..+|.|.++.-.. .+ ....++.|. ..|..++|.+ .+...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 35588999999999999999999999996432 21 223344443 3678899987 344567777
Q ss_pred eCCCeEEEEECCCCcE-----------------------------------EEEe--ccCCCeeEEEEcCCCcEEEEEcC
Q 036953 157 SLDHEVRLWDANTSEC-----------------------------------IGSC--DFYRPIASIAFHAEGELLAVASG 199 (792)
Q Consensus 157 S~DgtVrLWDl~tg~~-----------------------------------v~t~--~h~s~V~sVafSpdG~~LasgSd 199 (792)
+.|++|++|.+..... .+.+ .|.-.|++++++.|++.++++.+
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 8999999998864211 1112 24556899999999999999988
Q ss_pred CeEEEEECCCCCcccCCeEEecC-----CCCeEEEEEccCCCeEE-EEEeeCccccCCCcee-eecCCCcccCCCCceEE
Q 036953 200 HKLYIWPYNNKEEASSPIIVLKT-----RRSLRAVHFHPHAAPFV-LTAEVNDLDSSDSSMT-RATSPGYLRYPPPAVFV 272 (792)
Q Consensus 200 d~V~IWDlrt~~~~~~~~~~~~h-----~~sVtsVafSPdG~~Ll-aS~s~~dLrs~d~~~~-l~t~sg~~~~p~~~~~l 272 (792)
=+|.+|++..........-+..+ ..-|++..|||..-.++ .+++-..|+.-|.+.. +.. .....+
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd--------~hsKlf 256 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCD--------AHSKLF 256 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhc--------chhhhh
Confidence 88999999766543212222222 34588999999765544 4555555554443311 110 011122
Q ss_pred EEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 273 ANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 273 ~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.-..++..+.++.+ -...|.|+.|+.+||+++
T Consensus 257 Eepedp~~rsffse------iIsSISDvKFs~sGryil 288 (433)
T KOG1354|consen 257 EEPEDPSSRSFFSE------IISSISDVKFSHSGRYIL 288 (433)
T ss_pred ccccCCcchhhHHH------HhhhhhceEEccCCcEEE
Confidence 22234444555543 567899999999999999
No 249
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.37 E-value=9.4e-06 Score=92.38 Aligned_cols=175 Identities=15% Similarity=0.253 Sum_probs=120.5
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecc
Q 036953 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF 178 (792)
Q Consensus 99 ~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h 178 (792)
..|+++.-..-|+.++....|+-+++..|..+.-|.-..+.++++..++ -..+|++|+.||.|..||.+....+.++..
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~ 215 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA 215 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeec
Confidence 4555554333455555555788889999999888888889999999999 778999999999999999999877766632
Q ss_pred C------------CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecC--CCCeEEEEEccCC-CeEEEEE
Q 036953 179 Y------------RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKT--RRSLRAVHFHPHA-APFVLTA 242 (792)
Q Consensus 179 ~------------s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h--~~sVtsVafSPdG-~~LlaS~ 242 (792)
. ..|+++.|+.+|-.+++|. .+.++|||++..+. .....| .-+|..+.|.+.+ ..-++++
T Consensus 216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p----l~~kdh~~e~pi~~l~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP----LLVKDHGYELPIKKLDWQDTDQQNKVVSM 291 (703)
T ss_pred ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc----eeecccCCccceeeecccccCCCceEEec
Confidence 2 2389999999999999998 55699999999884 334444 6689999997762 2244444
Q ss_pred e-----eCccccCCCceeeec---CCCcccCCCCceEEEEecCC
Q 036953 243 E-----VNDLDSSDSSMTRAT---SPGYLRYPPPAVFVANAQSG 278 (792)
Q Consensus 243 s-----~~dLrs~d~~~~l~t---~sg~~~~p~~~~~l~~~ssG 278 (792)
. +|+-..+.....+.. ......+|...++|....++
T Consensus 292 Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~ 335 (703)
T KOG2321|consen 292 DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESS 335 (703)
T ss_pred chHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCC
Confidence 4 444333333322221 11233345555555554443
No 250
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.33 E-value=1.4e-05 Score=94.61 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=104.1
Q ss_pred CCeEEEEeccCC--------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--C--cEEEEecCCCCCcEEEEE
Q 036953 78 AESLRHLSAKYC--------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT--G--NCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 78 d~sIrvWd~~t~--------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t--g--k~v~~L~gH~~~VtsVaf 145 (792)
+..+.+|...+. .-..|...+++.+++|+++++++|..||.|.+|.--. + .....+.=|...|++++|
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~f 259 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSF 259 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEE
Confidence 444556665542 1235777789999999999999999999999996332 1 234556678899999999
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCC
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNK 210 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~ 210 (792)
++ ++.+|+||+..+-+-+|.+.+++....-+-.++|..+.++||+.+.++.. |+.|++....+.
T Consensus 260 S~-~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 260 SS-DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred ec-CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence 99 99999999999999999999998443336889999999999998777766 666888876443
No 251
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.32 E-value=0.00013 Score=83.28 Aligned_cols=155 Identities=10% Similarity=0.044 Sum_probs=97.7
Q ss_pred eEEEEeccCCC---cCCCCCCeEEEEEcCCCCEEEEEE-C--CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE
Q 036953 80 SLRHLSAKYCP---LVPPPRSTIAAAFSPDGRTLASTH-G--DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 80 sIrvWd~~t~~---L~gH~~~V~sLafSPDG~~LaSGS-~--DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL 153 (792)
.|.+++..+++ +....+......|+|||+.|+... . +..|.++|+.+++. ..+..+........|+| |++.|
T Consensus 214 ~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SP-DG~~I 291 (419)
T PRK04043 214 TLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVE-DDKRI 291 (419)
T ss_pred EEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECC-CCCEE
Confidence 34455554432 223345566788999999876543 2 35688889887764 44444444345578999 77766
Q ss_pred EEEe-CCC--eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-C-------C--eEEEEECCCCCcccCCeEEe
Q 036953 154 ASGS-LDH--EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-G-------H--KLYIWPYNNKEEASSPIIVL 220 (792)
Q Consensus 154 aSgS-~Dg--tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-d-------d--~V~IWDlrt~~~~~~~~~~~ 220 (792)
+-.+ ..+ .|.+.|+.+++.......... ...|+|||++|+... . + .|++.|+.+++... +.
T Consensus 292 ~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~----LT 365 (419)
T PRK04043 292 VFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR----LT 365 (419)
T ss_pred EEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE----CC
Confidence 6555 333 588889988776444322222 248999999887765 2 2 48888987775321 22
Q ss_pred cCCCCeEEEEEccCCCeEEEEEe
Q 036953 221 KTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 221 ~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.. .......|+|||+.++.+..
T Consensus 366 ~~-~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 366 AN-GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CC-CCcCCeEECCCCCEEEEEEc
Confidence 22 22335889999998887754
No 252
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.32 E-value=4.3e-05 Score=82.15 Aligned_cols=148 Identities=15% Similarity=0.187 Sum_probs=102.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECC-CCcEEEEecCCCCCcEEEEEccC-CCCEEEE-EeCCCeEEEEECCCC
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ-TGNCLKVLSGHRRTPWVVRFHPL-RSEILAS-GSLDHEVRLWDANTS 170 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~-tgk~v~~L~gH~~~VtsVafSP~-dg~lLaS-gS~DgtVrLWDl~tg 170 (792)
....|.++.+.++ +|++.- .+.|+||... .-+.++.+..-.++=--++..|. +..+|+. |-.-|.|.+-|+...
T Consensus 93 f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~ 169 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLAST 169 (346)
T ss_pred eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhc
Confidence 3567888888754 555544 5689999987 44556666532222112334442 3334443 346689999999875
Q ss_pred cE---EEEeccCCCeeEEEEcCCCcEEEEEc-CCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 171 EC---IGSCDFYRPIASIAFHAEGELLAVAS-GHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 171 ~~---v~t~~h~s~V~sVafSpdG~~LasgS-dd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+. .....|.+.|.+++.+.+|.++|++| .++ |+|||..+++...+ ...-.....|++++|+|++.+|++++.-.
T Consensus 170 ~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E-~RRG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 170 KPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQE-LRRGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred CcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeee-eecCCchheEEEEEeCCCccEEEEEcCCC
Confidence 54 44457999999999999999999999 566 99999999986652 11122356799999999999888777633
No 253
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=4.2e-06 Score=93.66 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=121.6
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccC-CCCEEEEEeCCCeEEEEEC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPL-RSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~-dg~lLaSgS~DgtVrLWDl 167 (792)
+|.+|.+.|+.+.|+..|..|++|+.|..|.+||...++.+..|. +|...|....|-|+ +...+++++.||.|++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 678999999999999999999999999999999999888776665 79988888888873 4567999999999999876
Q ss_pred CC-CcEEEE---eccCCCeeEEEEcCCCc-EEEEEcCCe-EEEEECCCCCcccCCeEEecCCC---CeEEEEEccCCCeE
Q 036953 168 NT-SECIGS---CDFYRPIASIAFHAEGE-LLAVASGHK-LYIWPYNNKEEASSPIIVLKTRR---SLRAVHFHPHAAPF 238 (792)
Q Consensus 168 ~t-g~~v~t---~~h~s~V~sVafSpdG~-~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~---sVtsVafSPdG~~L 238 (792)
.. +.+..+ ..|.++|..++.-|+.. .|.+++.+. +.-+|++.............+.. ..+.++.+|-..+.
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~ 296 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNE 296 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccc
Confidence 54 333322 36899999999999874 566666554 88899987654331111112222 57889999988765
Q ss_pred EEEEe-eCccccCCCc
Q 036953 239 VLTAE-VNDLDSSDSS 253 (792)
Q Consensus 239 laS~s-~~dLrs~d~~ 253 (792)
++.++ +.-.+.++.+
T Consensus 297 faVgG~dqf~RvYD~R 312 (559)
T KOG1334|consen 297 FAVGGSDQFARVYDQR 312 (559)
T ss_pred cccCChhhhhhhhccc
Confidence 55554 4444454443
No 254
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.27 E-value=3.3e-05 Score=94.12 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=108.9
Q ss_pred CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCC-------cEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCe
Q 036953 90 PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTG-------NCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161 (792)
Q Consensus 90 ~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tg-------k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt 161 (792)
.+..|...|..++.++ ++.+|++|+.||+||+||+..- +...++.-....+..+.+.+ .++.+|.++.||.
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFAVSTKDGS 1121 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEEEEcCCCe
Confidence 5678888999999888 5599999999999999998631 22333433567888888888 8899999999999
Q ss_pred EEEEECCCC-------cEEEEe--ccCCCeeEE-EEcCC-Cc-EEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEE
Q 036953 162 VRLWDANTS-------ECIGSC--DFYRPIASI-AFHAE-GE-LLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRA 228 (792)
Q Consensus 162 VrLWDl~tg-------~~v~t~--~h~s~V~sV-afSpd-G~-~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVts 228 (792)
|++.++.-. .+.... ...+.+.++ +|... +. .|+.+.+ ++|..||+++..... ........+.|++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w-~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW-RLKNQLRHGLVTS 1200 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHH-hhhcCccccceeE
Confidence 999988752 111111 233344333 33322 23 5555554 559999998876543 1122224578999
Q ss_pred EEEccCCCeEEEEEe-----eCcccc
Q 036953 229 VHFHPHAAPFVLTAE-----VNDLDS 249 (792)
Q Consensus 229 VafSPdG~~LlaS~s-----~~dLrs 249 (792)
++.+|.+..++.+.. .||+|.
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEeec
Confidence 999999998887666 555553
No 255
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=9.9e-06 Score=88.82 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=105.5
Q ss_pred CcEEEEEeCCCeEEEEeccCC-----CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEE-ecCCCCCcEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC-----PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKV-LSGHRRTPWV 142 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~-----~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~-L~gH~~~Vts 142 (792)
...++++..-+.+|+||.+.+ ++.--..++.++...|+++++++|..-+.+..||++.++.... |++-.+.|++
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirs 295 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRS 295 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcce
Confidence 567888889999999999865 2334466789999999999999999999999999999987766 8899999999
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCC
Q 036953 143 VRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAE 190 (792)
Q Consensus 143 VafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpd 190 (792)
+..+| ...++++|+.|..|||+|+.+.+++......+.++++.+.++
T Consensus 296 ih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 296 IHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred EEEcC-CCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 99999 888999999999999999999888877777778888877654
No 256
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.23 E-value=1.8e-05 Score=88.85 Aligned_cols=196 Identities=13% Similarity=0.136 Sum_probs=140.3
Q ss_pred eeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC-----cCCCCCCeEEEEEcC--CCC
Q 036953 36 EISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP-----LVPPPRSTIAAAFSP--DGR 108 (792)
Q Consensus 36 els~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~-----L~gH~~~V~sLafSP--DG~ 108 (792)
++..+...++.+.|...+.. +.++++|..+.+|+-.... ..+|...|....|-| +.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~----------------l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDV----------------LASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred cccCCCCccceeeecccCce----------------eeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCc
Confidence 34455555666666555554 4455677777777765442 257999999999999 667
Q ss_pred EEEEEECCCeEEEEECCC-CcE--EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe---c-cCC-
Q 036953 109 TLASTHGDHTVKIIDCQT-GNC--LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC---D-FYR- 180 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~t-gk~--v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~---~-h~s- 180 (792)
.+++++.||.|++=.+.. +.+ ...+..|.+.|..++.-|+....|.|++.|+.++-+|++...+...+ . ...
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 899999999999887643 322 34566799999999999988899999999999999999987665444 1 223
Q ss_pred --CeeEEEEcCCCc-EEEEEcCCe-EEEEECCCCCccc--------CCeEEe-cCCCCeEEEEEccCCCeEEEEEeeCcc
Q 036953 181 --PIASIAFHAEGE-LLAVASGHK-LYIWPYNNKEEAS--------SPIIVL-KTRRSLRAVHFHPHAAPFVLTAEVNDL 247 (792)
Q Consensus 181 --~V~sVafSpdG~-~LasgSdd~-V~IWDlrt~~~~~--------~~~~~~-~h~~sVtsVafSPdG~~LlaS~s~~dL 247 (792)
....++.+|... .+++++.+. +++||.++-.... .+.... .....|++++|+.++.-++++-.+.++
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 467889898775 788888666 9999997654321 011111 234569999999888878877765444
No 257
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.23 E-value=4.2e-05 Score=87.55 Aligned_cols=189 Identities=12% Similarity=0.079 Sum_probs=136.9
Q ss_pred CCCCCCceEeeecccceeeC---CC---CceeeeEEeeC--C-Cce-EeecCCCceeecCCcEEEEEeCCCeEEEEeccC
Q 036953 19 NHLRRRARNVSRLLAHREIS---PK---TKYVPKRQWVD--A-SKL-KTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY 88 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels---~~---tk~V~s~aWsp--d-~~l-la~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t 88 (792)
.+...+...+|+....+... +. +.......|.= + ..+ .-+-..+.-...+...++-+...+.+.+++...
T Consensus 10 ~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~ 89 (541)
T KOG4547|consen 10 LSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAG 89 (541)
T ss_pred ecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecC
Confidence 45577888999887765443 21 12344555640 0 000 000000111112333455556677777777765
Q ss_pred CCc------CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeE
Q 036953 89 CPL------VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162 (792)
Q Consensus 89 ~~L------~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtV 162 (792)
+.+ .+|.+.|+++.++.+...|.+++.|+.+..|+..+.+.++.+++.+..+.+++.+| |+..+++++ ++|
T Consensus 90 g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~i 166 (541)
T KOG4547|consen 90 GEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQI 166 (541)
T ss_pred CeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceE
Confidence 532 47999999999999999999999999999999999999999999999999999999 899998875 679
Q ss_pred EEEECCCCcEEEEe-ccCCCeeEEEEcCC-----CcEEEEEcC--CeEEEEECCCC
Q 036953 163 RLWDANTSECIGSC-DFYRPIASIAFHAE-----GELLAVASG--HKLYIWPYNNK 210 (792)
Q Consensus 163 rLWDl~tg~~v~t~-~h~s~V~sVafSpd-----G~~LasgSd--d~V~IWDlrt~ 210 (792)
++||+++++.+..| +|.++|+++.|--+ |+++.++.. ..+.+|-+...
T Consensus 167 k~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 167 KVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 99999999999999 58999999999876 777777663 33888877653
No 258
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.14 E-value=7.7e-06 Score=89.94 Aligned_cols=151 Identities=20% Similarity=0.323 Sum_probs=102.4
Q ss_pred CCeEEEEeccCC---CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEe-cCCCCCcEEEEEccCCCCEE
Q 036953 78 AESLRHLSAKYC---PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVL-SGHRRTPWVVRFHPLRSEIL 153 (792)
Q Consensus 78 d~sIrvWd~~t~---~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L-~gH~~~VtsVafSP~dg~lL 153 (792)
...+.+|+...+ .+.||-.-++.++|+||+++|+++..|..|+|-....-..+..| -||+..|..++..+ +..|
T Consensus 131 ~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~L 208 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLL 208 (390)
T ss_pred ceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--Ccee
Confidence 344555654422 45789999999999999999999999999999887655445444 37999999999986 5679
Q ss_pred EEEeCCCeEEEEECCCCcEEEEeccCC---Cee----------EEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEE
Q 036953 154 ASGSLDHEVRLWDANTSECIGSCDFYR---PIA----------SIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIV 219 (792)
Q Consensus 154 aSgS~DgtVrLWDl~tg~~v~t~~h~s---~V~----------sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~ 219 (792)
+|+|.|++|++||+.+++++.++...+ .+. .++|......++..+++. ++++.....+... ..
T Consensus 209 lS~sGD~tlr~Wd~~sgk~L~t~dl~s~~~~i~~lap~~f~~~~i~i~e~~~~~~~~~~~~p~~if~~~a~~~~~---v~ 285 (390)
T KOG3914|consen 209 LSGSGDKTLRLWDITSGKLLDTCDLSSLVIPILPLAPPKFIPTIIAIFESSRLVWLLCDGTPVVIFGAEALPTSL---VP 285 (390)
T ss_pred eecCCCCcEEEEecccCCcccccchhHhhhhccccCchhhhhhHHHHHHhhhhhheecCCCeEEEEeecCCCcee---EE
Confidence 999999999999999999887764222 221 122222233444444444 7777766655332 22
Q ss_pred ecCCCCeEEEEEcc
Q 036953 220 LKTRRSLRAVHFHP 233 (792)
Q Consensus 220 ~~h~~sVtsVafSP 233 (792)
......+.++++-.
T Consensus 286 l~~~~qv~d~a~~e 299 (390)
T KOG3914|consen 286 LVSEVQVWDLALLE 299 (390)
T ss_pred EEecccceeeeeee
Confidence 22333355555543
No 259
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.13 E-value=0.00087 Score=75.44 Aligned_cols=175 Identities=15% Similarity=0.168 Sum_probs=123.3
Q ss_pred EcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCC-eEEEEECCCCcEEEEeccCC
Q 036953 103 FSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH-EVRLWDANTSECIGSCDFYR 180 (792)
Q Consensus 103 fSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg-tVrLWDl~tg~~v~t~~h~s 180 (792)
|++ +|.+++..|. |+..|.+...+-.++ -+|.+.|.-..+.- +++-++.|..|+ .+-++|.++++.......-+
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceEEEeeCCcc
Confidence 444 7888887775 567777765554332 25778888888887 777899999999 89999999988777777788
Q ss_pred CeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecC
Q 036953 181 PIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATS 259 (792)
Q Consensus 181 ~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~ 259 (792)
.|.++..+++|++++++.+.- |.++|+.++.... ......+-|+...|||++++++-+--
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vididngnv~~---idkS~~~lItdf~~~~nsr~iAYafP---------------- 463 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKSEYGLITDFDWHPNSRWIAYAFP---------------- 463 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE---ecccccceeEEEEEcCCceeEEEecC----------------
Confidence 899999999999999998654 8888998887321 22334567999999999997765432
Q ss_pred CCcccCCCCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 260 PGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 260 sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.|+ -...+.+.+...++.....++ ...=.+.+|.|||++|+
T Consensus 464 ~gy---~tq~Iklydm~~~Kiy~vTT~-------ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 464 EGY---YTQSIKLYDMDGGKIYDVTTP-------TAYDFSPAFDPDGRYLY 504 (668)
T ss_pred cce---eeeeEEEEecCCCeEEEecCC-------cccccCcccCCCCcEEE
Confidence 111 123455555554444333321 11223478999999887
No 260
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.11 E-value=2.8e-05 Score=84.29 Aligned_cols=202 Identities=14% Similarity=0.191 Sum_probs=128.3
Q ss_pred CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEE-EEeccCC------Cc-----CCCCCCeEEEEEcCCC-
Q 036953 41 TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLR-HLSAKYC------PL-----VPPPRSTIAAAFSPDG- 107 (792)
Q Consensus 41 tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIr-vWd~~t~------~L-----~gH~~~V~sLafSPDG- 107 (792)
...+.++.|+..|.++++| +.+++++-...++..+ .++..+. .+ ..-...|+.+.|.+++
T Consensus 25 adiis~vef~~~Ge~LatG-------dkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n 97 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATG-------DKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN 97 (433)
T ss_pred hcceeeEEeecccceEeec-------CCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence 3467899999999999999 5555655554444332 2222111 11 1223568899999854
Q ss_pred -CEEEEEECCCeEEEEECCCCcE-----------------------------------EEEe-cCCCCCcEEEEEccCCC
Q 036953 108 -RTLASTHGDHTVKIIDCQTGNC-----------------------------------LKVL-SGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 108 -~~LaSGS~DGtVrIWDl~tgk~-----------------------------------v~~L-~gH~~~VtsVafSP~dg 150 (792)
..++....|++|++|.+..... .+.+ .+|.--|.++.++. |.
T Consensus 98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~ 176 (433)
T KOG1354|consen 98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DK 176 (433)
T ss_pred ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-cc
Confidence 5778888999999998753211 0111 25777889999998 87
Q ss_pred CEEEEEeCCCeEEEEECCCCc-EEEEec--------cCCCeeEEEEcCCCc-E-EEEEcCCeEEEEECCCCCccc-----
Q 036953 151 EILASGSLDHEVRLWDANTSE-CIGSCD--------FYRPIASIAFHAEGE-L-LAVASGHKLYIWPYNNKEEAS----- 214 (792)
Q Consensus 151 ~lLaSgS~DgtVrLWDl~tg~-~v~t~~--------h~s~V~sVafSpdG~-~-LasgSdd~V~IWDlrt~~~~~----- 214 (792)
..++++ .|=.|.+|++.--. +....+ ...-|++..|||... . ..+++.|.|++.|++....-.
T Consensus 177 Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKl 255 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKL 255 (433)
T ss_pred ceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhh
Confidence 877775 57789999997532 222221 223578899999763 3 344456779999998432110
Q ss_pred --CC---e---EEecCCCCeEEEEEccCCCeEEE----EEeeCccccCC
Q 036953 215 --SP---I---IVLKTRRSLRAVHFHPHAAPFVL----TAEVNDLDSSD 251 (792)
Q Consensus 215 --~~---~---~~~~h~~sVtsVafSPdG~~Lla----S~s~~dLrs~d 251 (792)
++ . .+..--..|..+.|+++|+++++ +-.+||+....
T Consensus 256 fEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~ 304 (433)
T KOG1354|consen 256 FEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA 304 (433)
T ss_pred hccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC
Confidence 00 0 01112357899999999998875 44466665433
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.11 E-value=6.8e-05 Score=87.06 Aligned_cols=251 Identities=11% Similarity=0.091 Sum_probs=151.2
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeC---CCeEEEE----ecc-CCCcCCCCCCeEEEEEcCCCCEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVE---AESLRHL----SAK-YCPLVPPPRSTIAAAFSPDGRTL 110 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~---d~sIrvW----d~~-t~~L~gH~~~V~sLafSPDG~~L 110 (792)
|......+.+|.....+++||+.++.+ +++-... |...+-. +.. .+++.||...|.-+.|+.+.++|
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlL-----KVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLL-----KVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred CCCceEEEEEEcccCCeEEecccccee-----EEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 667788999999999999998533222 3332221 1111110 001 22578999999999999999999
Q ss_pred EEEECCCeEEEEECCCCcEEE--EecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEE
Q 036953 111 ASTHGDHTVKIIDCQTGNCLK--VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAF 187 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~v~--~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVaf 187 (792)
-+...+|.|.+|-+-.+.-.. .-...+.-|.+++|+. ++..++..-.||.|.+=.+...+ ++... .......+.|
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~w 164 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLW 164 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccce-ecchhcchheccceee
Confidence 999999999999987664211 1122456788999999 99999999999988877665432 22211 2223457899
Q ss_pred cCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCC-cccC
Q 036953 188 HAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPG-YLRY 265 (792)
Q Consensus 188 SpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg-~~~~ 265 (792)
++|.+.+..+- ++.+++||....-..+... ...-.++. .|+.-+..+..-. -..| +...
T Consensus 165 s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~---~c~Vn~tg-~~s~~~~kia~i~---------------w~~g~~~~v 225 (1189)
T KOG2041|consen 165 SEDLEQALFKKANGETHLYDNQGNFERKLEK---DCEVNGTG-IFSNFPTKIAEIE---------------WNTGPYQPV 225 (1189)
T ss_pred cccHHHHHhhhcCCcEEEecccccHHHhhhh---ceEEeeee-eecCCCcccccee---------------eccCccccC
Confidence 99998777666 5569999986543222000 00011111 1222222211111 0111 1111
Q ss_pred CC-CceEEEEecCCCE---EEEeeccCcccCCCceEEEeEECCCCcEEEEcccc
Q 036953 266 PP-PAVFVANAQSGDH---VSLAAELPLMSSLPFLIVPSVSIDDSRIDLQHASR 315 (792)
Q Consensus 266 p~-~~~~l~~~ssG~~---~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv~~~~~ 315 (792)
+| ...+......|.+ ++.....+++-+....|..+.++++|..+++.+..
T Consensus 226 ~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 226 PPDRPRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CCCCCEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCc
Confidence 22 2333444455655 44444555555677889999999999999855543
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=0.00035 Score=79.85 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=55.7
Q ss_pred eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC---CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe
Q 036953 161 EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG---HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP 237 (792)
Q Consensus 161 tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd---d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~ 237 (792)
++++.++....+...+...++|.++.|+++++-|+++.+ .++.|||++..- ...-..++=+++-|+|.|+.
T Consensus 252 ~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~------v~df~egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 252 TLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP------VFDFPEGPRNTAFFNPHGNI 325 (566)
T ss_pred eEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE------eEeCCCCCccceEECCCCCE
Confidence 456666664455555567889999999999998888764 349999996643 23334566788999999997
Q ss_pred EEEEE
Q 036953 238 FVLTA 242 (792)
Q Consensus 238 LlaS~ 242 (792)
+++++
T Consensus 326 i~lAG 330 (566)
T KOG2315|consen 326 ILLAG 330 (566)
T ss_pred EEEee
Confidence 76665
No 263
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.09 E-value=1.8e-05 Score=92.06 Aligned_cols=135 Identities=18% Similarity=0.297 Sum_probs=100.7
Q ss_pred CeEEEEEcCCC---CEEEEEECCCeEEEEECCC---CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 97 STIAAAFSPDG---RTLASTHGDHTVKIIDCQT---GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 97 ~V~sLafSPDG---~~LaSGS~DGtVrIWDl~t---gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
.|-.+.|++.. ..+++.+.. .-.+|++.. ......+.+|...|+++.|+|++...+++|+.|..|..||++..
T Consensus 69 ~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hhcceecccCCCCceeEEecCcc-hhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 47778888832 345555544 455899853 34556778999999999999999999999999999999999984
Q ss_pred -cEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccC
Q 036953 171 -ECIGSC-DFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPH 234 (792)
Q Consensus 171 -~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPd 234 (792)
.++..+ ........++|+-....+.+.+.++ |++||++.+.... .....|...|+.++|+.-
T Consensus 148 ~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl--~s~K~~vs~vn~~~fnr~ 212 (1081)
T KOG0309|consen 148 HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL--CSLKGHVSSVNSIDFNRF 212 (1081)
T ss_pred CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcce--EEecccceeeehHHHhhh
Confidence 456555 4667788999997665555555444 9999999887542 345557778888888764
No 264
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.09 E-value=0.00022 Score=80.00 Aligned_cols=145 Identities=13% Similarity=0.100 Sum_probs=115.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCC-eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDH-TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DG-tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
.+|...|.-..+.-+++.++.|..|| .+-|+|..+++ ++.+.+.-+.|..+..++ ++++++.+....++.+.|+.++
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididng 433 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNG 433 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCC
Confidence 46778899999988888999999999 89999998776 556666778899999999 9999999988889999999998
Q ss_pred cEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CC----eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 171 ECIGSC-DFYRPIASIAFHAEGELLAVAS-GH----KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 171 ~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd----~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+....- ...+-|+.+.|||++++||-+- ++ .|+++|+...+... .......-.+-+|.|++++|..-+
T Consensus 434 nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~----vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 434 NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD----VTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE----ecCCcccccCcccCCCCcEEEEEe
Confidence 765443 3567799999999999999886 32 39999998877322 222233445778999999886544
No 265
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.08 E-value=9.2e-06 Score=60.58 Aligned_cols=39 Identities=36% Similarity=0.805 Sum_probs=36.8
Q ss_pred CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 127 GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 127 gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
++++.++.+|.+.|++++|+| ++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 367889999999999999999 899999999999999998
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=9.3e-05 Score=84.42 Aligned_cols=131 Identities=18% Similarity=0.324 Sum_probs=97.8
Q ss_pred CCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC---CeEEEEECCC
Q 036953 95 PRSTIAAAFSPDGRTLASTH--GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD---HEVRLWDANT 169 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS--~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D---gtVrLWDl~t 169 (792)
.++|.++.|+++++.|+++. .=-.+.|||++ ++.+..|. .++=.++-|+| .+++++.++-+ |.+-+||+.+
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECC-CCCEEEEeecCCCCCceEEEeccc
Confidence 67899999999998887654 34678999975 66666664 45567799999 99999988854 7899999999
Q ss_pred CcEEEEeccCCCeeEEEEcCCCcEEEEEc-------CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC
Q 036953 170 SECIGSCDFYRPIASIAFHAEGELLAVAS-------GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 170 g~~v~t~~h~s~V~sVafSpdG~~LasgS-------dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG 235 (792)
.+++..+.... -+-+.|+|||++|+++. |++++||++.....-. ..-.+.+..+.|-|-.
T Consensus 346 ~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~-----~~f~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 346 RKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE-----KMFKSELLQVEWRPFN 412 (566)
T ss_pred hhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh-----hhhhHhHhheeeeecC
Confidence 88888776433 34578999999999886 4569999985543211 1112257788887643
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.02 E-value=0.0034 Score=70.16 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=58.2
Q ss_pred EcCCCCEEEEEEC----------CCeEEEEECCCCcEEEEecCC-------CCCcEEEEEccCCCCEEEEEe-C-CCeEE
Q 036953 103 FSPDGRTLASTHG----------DHTVKIIDCQTGNCLKVLSGH-------RRTPWVVRFHPLRSEILASGS-L-DHEVR 163 (792)
Q Consensus 103 fSPDG~~LaSGS~----------DGtVrIWDl~tgk~v~~L~gH-------~~~VtsVafSP~dg~lLaSgS-~-DgtVr 163 (792)
+|||++.|+++.. +..|.+||+.+.+.+..+.-- ......++++| |+++|+... . +..|-
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 9999999988766 689999999999999888621 22334789999 888888765 3 78999
Q ss_pred EEECCCCcEEEEe
Q 036953 164 LWDANTSECIGSC 176 (792)
Q Consensus 164 LWDl~tg~~v~t~ 176 (792)
+.|+.+++.+..+
T Consensus 132 VvD~~~~kvv~ei 144 (352)
T TIGR02658 132 VVDLEGKAFVRMM 144 (352)
T ss_pred EEECCCCcEEEEE
Confidence 9999988776654
No 268
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.99 E-value=6.1e-05 Score=83.04 Aligned_cols=113 Identities=16% Similarity=0.251 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 98 TIAAAFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
-+++.|..+......+.. ...+.+|....+.+. .+-||-..++.++|+| |+++++++..|..||+-....--.+.
T Consensus 110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~Ie 187 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIE 187 (390)
T ss_pred cceeeeeeccceEEEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchh
Confidence 445555554555544443 445555555544443 3448999999999999 88999999999999998887766666
Q ss_pred Ee--ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcc
Q 036953 175 SC--DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEA 213 (792)
Q Consensus 175 t~--~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~ 213 (792)
.| +|...|..++.-++.. |++++ |++|++||+++++..
T Consensus 188 sfclGH~eFVS~isl~~~~~-LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 188 SFCLGHKEFVSTISLTDNYL-LLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hhccccHhheeeeeeccCce-eeecCCCCcEEEEecccCCcc
Confidence 65 6889999999876655 55555 666999999999865
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.95 E-value=0.00038 Score=73.70 Aligned_cols=174 Identities=10% Similarity=0.014 Sum_probs=118.4
Q ss_pred CcEEEEEeCCCeEEEEeccCC--CcCCCCCC--eEEEEEcCCCCEEEEEECCCeEEEEECCCCc--EEE-EecCCCCCcE
Q 036953 69 KRGLVSWVEAESLRHLSAKYC--PLVPPPRS--TIAAAFSPDGRTLASTHGDHTVKIIDCQTGN--CLK-VLSGHRRTPW 141 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~--~L~gH~~~--V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk--~v~-~L~gH~~~Vt 141 (792)
.-.+..++.|.++++.++... ...-|... +..+++++|++++++.+....|..|.+.... .+. .....+..-.
T Consensus 128 ~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF 207 (344)
T KOG4532|consen 128 KFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGF 207 (344)
T ss_pred ccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCce
Confidence 445666777888888776543 23334443 8899999999999999999999999886532 223 2223344456
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-----ccCCCeeEEEEcCCCc--EEEEEc-CCeEEEEECCCCCc
Q 036953 142 VVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSC-----DFYRPIASIAFHAEGE--LLAVAS-GHKLYIWPYNNKEE 212 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~-----~h~s~V~sVafSpdG~--~LasgS-dd~V~IWDlrt~~~ 212 (792)
+..|+. ....+|++..||++.+||++.. .+.... .|.+.+..+.|++.|. +|+..- -..+++.|+++...
T Consensus 208 ~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 208 YNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred eeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 788998 7889999999999999999974 333332 4789999999998773 344333 34599999999875
Q ss_pred ccCCe----EEecCC-CCeEEEEEccCCCeEEEEEe
Q 036953 213 ASSPI----IVLKTR-RSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 213 ~~~~~----~~~~h~-~sVtsVafSPdG~~LlaS~s 243 (792)
.+... ....|. ..|..-.|+.++..+.+...
T Consensus 287 ~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 287 HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred eeEEecCccccccccccccccccccCCCcccccccc
Confidence 43111 111122 33677777777665555444
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=8.8e-06 Score=91.82 Aligned_cols=152 Identities=14% Similarity=0.182 Sum_probs=109.5
Q ss_pred CCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-------CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCe
Q 036953 89 CPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT-------GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHE 161 (792)
Q Consensus 89 ~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t-------gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dgt 161 (792)
+.+.||...|..++--.+.+-+++++.|++|++|.++. ..|..+++.|+.+|.++.|-. +.+++++| |+.
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGG 805 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCc
Confidence 35678999998887766888999999999999999863 236788899999999999988 77777765 899
Q ss_pred EEEEECCCCcEEEEec---cCCCeeEEEEcC--CCcEEEEEc--CCeEEEEECCCCCcccCCeEE--ecCCCCeEEEEEc
Q 036953 162 VRLWDANTSECIGSCD---FYRPIASIAFHA--EGELLAVAS--GHKLYIWPYNNKEEASSPIIV--LKTRRSLRAVHFH 232 (792)
Q Consensus 162 VrLWDl~tg~~v~t~~---h~s~V~sVafSp--dG~~LasgS--dd~V~IWDlrt~~~~~~~~~~--~~h~~sVtsVafS 232 (792)
|++||.--++++.... ..+.+..+.--+ +..++..++ ..+|+++|.+..+...+.... ......+++++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999998887776442 222333333222 444555543 455999999887754322222 2234678899999
Q ss_pred cCCCeEEEEEe
Q 036953 233 PHAAPFVLTAE 243 (792)
Q Consensus 233 PdG~~LlaS~s 243 (792)
+.|+.+++.-+
T Consensus 886 ~~GN~lAa~LS 896 (1034)
T KOG4190|consen 886 DKGNKLAAALS 896 (1034)
T ss_pred cCcchhhHHhc
Confidence 99998876544
No 271
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.91 E-value=3.6e-05 Score=83.47 Aligned_cols=139 Identities=11% Similarity=0.157 Sum_probs=100.9
Q ss_pred EEeCCCeEEEEeccCC--CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC-----cEEEEecCCCCCcEEEEEc
Q 036953 74 SWVEAESLRHLSAKYC--PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTG-----NCLKVLSGHRRTPWVVRFH 146 (792)
Q Consensus 74 S~s~d~sIrvWd~~t~--~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tg-----k~v~~L~gH~~~VtsVafS 146 (792)
+.+.+..+-+.+..++ +....+..|.++.|.-.++.+..|..+|.|..+|++.+ .+...|. |...|+++..-
T Consensus 229 s~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~L 307 (425)
T KOG2695|consen 229 SVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQIL 307 (425)
T ss_pred cccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhhh
Confidence 3344555556666654 22235667999999988999999999999999999764 3555665 89999998876
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCcE---EEEec-cCCCe--eEEEEcCCCcEEEEEcCCe-EEEEECCCCCcc
Q 036953 147 PLRSEILASGSLDHEVRLWDANTSEC---IGSCD-FYRPI--ASIAFHAEGELLAVASGHK-LYIWPYNNKEEA 213 (792)
Q Consensus 147 P~dg~lLaSgS~DgtVrLWDl~tg~~---v~t~~-h~s~V--~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~ 213 (792)
..++++|++.+.+|+|++||++.-++ +..+. |-..- .-+-.++....++++++|. .+||.++.+...
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 65778888889999999999998666 55553 32222 2223345556777777766 999999988754
No 272
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.90 E-value=0.0023 Score=79.89 Aligned_cols=211 Identities=16% Similarity=0.189 Sum_probs=123.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEEC---C---CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC---CCeEEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHG---D---HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL---DHEVRL 164 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~---D---GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~---DgtVrL 164 (792)
+.+.-..++|-.||++||+.+. + ..++||+-+ |+...+-+.-.+--..++|.| .|++|++.-. ...|.+
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrP-sG~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRP-SGNLIASSQRLPDRHDVVF 285 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCC-CCCEEEEEEEcCCCcEEEE
Confidence 3445668899999999998874 2 579999954 654433333333334689999 9999998864 345777
Q ss_pred EECCC---CcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCe-EE
Q 036953 165 WDANT---SECIGSC-DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAP-FV 239 (792)
Q Consensus 165 WDl~t---g~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~-Ll 239 (792)
|.-+. ++....+ .....|..+.|+.|+..||+-..+.|++|-..+..---+..........+..+.|+|.... |.
T Consensus 286 fErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 286 FERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred EecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence 76543 2222222 2356799999999999999988778999988766421111122223344556999996554 33
Q ss_pred EEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEee------cc----CcccCCCceEEEeEECCCCcEE
Q 036953 240 LTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAA------EL----PLMSSLPFLIVPSVSIDDSRID 309 (792)
Q Consensus 240 aS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s------~l----~~l~gh~~~VwdV~~SpDGr~l 309 (792)
+.+..+.+...+.........+.. +...-.+++ -+|+.+.+.. .. ..+. .+..|.+++|++++..+
T Consensus 366 v~t~~g~~~~~~~~~~v~~s~~~~--~~D~g~vaV-IDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~ 441 (928)
T PF04762_consen 366 VLTSNGQYEIYDFAWDVSRSPGSS--PNDNGTVAV-IDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRF 441 (928)
T ss_pred EEecCCcEEEEEEEEEEEecCCCC--ccCceEEEE-EeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeE
Confidence 333334443333332222222211 111112222 3455544433 11 1112 46788999999988644
Q ss_pred E
Q 036953 310 L 310 (792)
Q Consensus 310 v 310 (792)
+
T Consensus 442 a 442 (928)
T PF04762_consen 442 A 442 (928)
T ss_pred E
Confidence 4
No 273
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.82 E-value=0.02 Score=59.90 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=99.5
Q ss_pred eCCCeEEEEeccCCCcCC-CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC-----CCCCcEEEEEccCC
Q 036953 76 VEAESLRHLSAKYCPLVP-PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG-----HRRTPWVVRFHPLR 149 (792)
Q Consensus 76 s~d~sIrvWd~~t~~L~g-H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g-----H~~~VtsVafSP~d 149 (792)
...+.|..|+..++...- .......+++...+..|+.+..++ +.++|..+++....+.. .....+++++.+ +
T Consensus 19 ~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~ 96 (246)
T PF08450_consen 19 IPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-D 96 (246)
T ss_dssp TTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-T
T ss_pred cCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-C
Confidence 345666666665553211 111277888884335566666655 55669988865443332 345678899999 8
Q ss_pred CCEEEEEeCC--------CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCc-ccCCeE
Q 036953 150 SEILASGSLD--------HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEE-ASSPII 218 (792)
Q Consensus 150 g~lLaSgS~D--------gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~-~~~~~~ 218 (792)
+++.++.... +.|..++.. ++.......-...+.++|+|+++.|+++. .++|..|++..... ......
T Consensus 97 G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~ 175 (246)
T PF08450_consen 97 GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRV 175 (246)
T ss_dssp S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEE
T ss_pred CCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeee
Confidence 8888887644 557778877 66555555566789999999999887654 45699999865432 211111
Q ss_pred Eec--C-CCCeEEEEEccCCCeEE
Q 036953 219 VLK--T-RRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 219 ~~~--h-~~sVtsVafSPdG~~Ll 239 (792)
... . ....-.+++..+|+.++
T Consensus 176 ~~~~~~~~g~pDG~~vD~~G~l~v 199 (246)
T PF08450_consen 176 FIDFPGGPGYPDGLAVDSDGNLWV 199 (246)
T ss_dssp EEE-SSSSCEEEEEEEBTTS-EEE
T ss_pred EEEcCCCCcCCCcceEcCCCCEEE
Confidence 211 1 22367899999998444
No 274
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.76 E-value=0.00051 Score=74.81 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=135.0
Q ss_pred cCCcEEEEEeCCCeEEEEeccC-CCc-----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC----CCcEEEEecCC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKY-CPL-----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ----TGNCLKVLSGH 136 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t-~~L-----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~----tgk~v~~L~gH 136 (792)
.....+++.++|.++|+|..+. +++ ..-+.+++++.+.++..+|+.|-..|++.-+.+. .....+....|
T Consensus 34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h 113 (404)
T KOG1409|consen 34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAH 113 (404)
T ss_pred cCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhh
Confidence 3456789999999999997653 222 2236779999999999999999999999888664 23345666789
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-----------------------------------------cEEEE
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-----------------------------------------ECIGS 175 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-----------------------------------------~~v~t 175 (792)
...|..+-|+- ...++++++.|+.+.---.+.+ .++.+
T Consensus 114 ~~~v~~~if~~-~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~ 192 (404)
T KOG1409|consen 114 QARVSAIVFSL-THEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT 192 (404)
T ss_pred hcceeeEEecC-CceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence 99999999987 7788999888876543211111 11222
Q ss_pred e-ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCc
Q 036953 176 C-DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSS 253 (792)
Q Consensus 176 ~-~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~ 253 (792)
+ +|.+.+.+++|.+....|.++.. .++.+||+-..+... ....+|...|..+..-+.-+.++++..+..|..|+..
T Consensus 193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee--eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence 2 46778999999999999999884 459999997665432 4566788888888888877777777776666555544
Q ss_pred e
Q 036953 254 M 254 (792)
Q Consensus 254 ~ 254 (792)
.
T Consensus 271 ~ 271 (404)
T KOG1409|consen 271 V 271 (404)
T ss_pred c
Confidence 3
No 275
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.0037 Score=71.66 Aligned_cols=282 Identities=15% Similarity=0.130 Sum_probs=164.9
Q ss_pred CCCCCCceEeeecccceeeCCC-CceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCC----
Q 036953 19 NHLRRRARNVSRLLAHREISPK-TKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVP---- 93 (792)
Q Consensus 19 ~s~~s~~r~V~~l~~~rels~~-tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~g---- 93 (792)
.+....++.+|.-.....+... -.-+.-+.+||+-+++.+-.-.-.... +.-.+...+++||+.++.+..
T Consensus 226 ~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~-----~~d~e~~~l~IWDI~tG~lkrsF~~ 300 (698)
T KOG2314|consen 226 VTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVE-----EDDNEGQQLIIWDIATGLLKRSFPV 300 (698)
T ss_pred EEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccC-----cccCCCceEEEEEccccchhcceec
Confidence 5667888888877666554422 234667788888877544311111101 112456789999999885431
Q ss_pred --CCCCe-EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC-----CeEEEE
Q 036953 94 --PPRST-IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD-----HEVRLW 165 (792)
Q Consensus 94 --H~~~V-~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D-----gtVrLW 165 (792)
....+ --..||.|++++|--..| .|.||+..+-..+-.-.-.-..|....|+| .+++||--... .++-|-
T Consensus 301 ~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~ 378 (698)
T KOG2314|consen 301 IKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLM 378 (698)
T ss_pred cCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEE
Confidence 11112 246899999999987775 699998765332211111235688899999 77777754321 346667
Q ss_pred ECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEcC--------C---eEEEEECCCCCcccCCeEEecCCCCeEEEEEcc
Q 036953 166 DANTSECIGSCD-FYRPIASIAFHAEGELLAVASG--------H---KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP 233 (792)
Q Consensus 166 Dl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgSd--------d---~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP 233 (792)
.+.+++.+++.. ++-.=..+-|-.+|.+|++--+ + .+.|+.++.... +.....-...|...+|-|
T Consensus 379 evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI---pve~velke~vi~FaWEP 455 (698)
T KOG2314|consen 379 EVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI---PVEVVELKESVIAFAWEP 455 (698)
T ss_pred ecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC---Cceeeecchheeeeeecc
Confidence 777776665543 2222234566677888876431 1 267777766653 345556678899999999
Q ss_pred CCCeEEEEEe--------eCccccCCCce----e-eecCCCcccCCCCceEEEEecCC---CEEEEee-cc---C-cccC
Q 036953 234 HAAPFVLTAE--------VNDLDSSDSSM----T-RATSPGYLRYPPPAVFVANAQSG---DHVSLAA-EL---P-LMSS 292 (792)
Q Consensus 234 dG~~LlaS~s--------~~dLrs~d~~~----~-l~t~sg~~~~p~~~~~l~~~ssG---~~~~l~s-~l---~-~l~g 292 (792)
.|+.+++-.+ .+.+.....+. . -+...+...|.|...+++++.-. ....+.. .. . +..-
T Consensus 456 ~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~ 535 (698)
T KOG2314|consen 456 HGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP 535 (698)
T ss_pred CCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc
Confidence 9998876544 23333211110 1 12334456676666666555322 1222222 11 0 1111
Q ss_pred CCceEEEeEECCCCcEEE
Q 036953 293 LPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 293 h~~~VwdV~~SpDGr~lv 310 (792)
-.+....+.+.|+|||++
T Consensus 536 eh~~at~veWDPtGRYvv 553 (698)
T KOG2314|consen 536 EHFAATEVEWDPTGRYVV 553 (698)
T ss_pred cccccccceECCCCCEEE
Confidence 234567889999999999
No 276
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=8e-05 Score=84.32 Aligned_cols=145 Identities=20% Similarity=0.179 Sum_probs=107.0
Q ss_pred cCCcEEEEEeCCCeEEEEeccCC-----------CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYC-----------PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS- 134 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~-----------~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~- 134 (792)
+....+++.+.|+++++|..+.. ++..|+++|.++.|-.+.+.++++ |+-|.+||.--++.+....
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~d 822 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMED 822 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhc
Confidence 56778899999999999998622 356899999999999888888765 7889999987776554332
Q ss_pred -CCCCCcEEEEEccC-CCCE-EEEEeCCCeEEEEECCCCcEEEEec------cCCCeeEEEEcCCCcEEEEEc-CCeEEE
Q 036953 135 -GHRRTPWVVRFHPL-RSEI-LASGSLDHEVRLWDANTSECIGSCD------FYRPIASIAFHAEGELLAVAS-GHKLYI 204 (792)
Q Consensus 135 -gH~~~VtsVafSP~-dg~l-LaSgS~DgtVrLWDl~tg~~v~t~~------h~s~V~sVafSpdG~~LasgS-dd~V~I 204 (792)
...+.+..+..-+. +..+ ++-|+...+||++|.+.++.+..+. .+.-+.+++.-+.|++++++- ++.|.+
T Consensus 823 apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~ 902 (1034)
T KOG4190|consen 823 APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAI 902 (1034)
T ss_pred CcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEE
Confidence 12223333333331 3334 4445788999999999987776653 235578999999999999886 556999
Q ss_pred EECCCCCcc
Q 036953 205 WPYNNKEEA 213 (792)
Q Consensus 205 WDlrt~~~~ 213 (792)
.|.++++.+
T Consensus 903 LDaR~G~vI 911 (1034)
T KOG4190|consen 903 LDARNGKVI 911 (1034)
T ss_pred EecCCCcee
Confidence 999998843
No 277
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.67 E-value=0.00041 Score=74.58 Aligned_cols=205 Identities=15% Similarity=0.180 Sum_probs=125.7
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccC-CCcCCC------------CCCeEEEEEcC
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKY-CPLVPP------------PRSTIAAAFSP 105 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t-~~L~gH------------~~~V~sLafSP 105 (792)
.....++.+.|...|.+++|| |.+++++-....+. +....+. ..+.+| ...|..+.|..
T Consensus 24 tead~ItaVefd~tg~YlatG-------DkgGRVvlfer~~s-~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~ 95 (460)
T COG5170 24 TEADKITAVEFDETGLYLATG-------DKGGRVVLFEREKS-YGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD 95 (460)
T ss_pred cccceeeEEEeccccceEeec-------CCCceEEEeecccc-cccchhhhhhhcccccchhhhhhccHHHHhhheeeec
Confidence 344578999999999999999 44445444433322 2111110 012222 24578888876
Q ss_pred CC--CEEEEEECCCeEEEEECCCCcE-------------------------------------E-----EEe-cCCCCCc
Q 036953 106 DG--RTLASTHGDHTVKIIDCQTGNC-------------------------------------L-----KVL-SGHRRTP 140 (792)
Q Consensus 106 DG--~~LaSGS~DGtVrIWDl~tgk~-------------------------------------v-----~~L-~gH~~~V 140 (792)
++ ..++..+.|++|++|.+..... + +.+ ..|.--|
T Consensus 96 ~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhi 175 (460)
T COG5170 96 DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHI 175 (460)
T ss_pred CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEe
Confidence 43 4677888999999998753200 0 111 3466678
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----cc-----CCCeeEEEEcCCCc--EEEEEcCCeEEEEECCC
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC----DF-----YRPIASIAFHAEGE--LLAVASGHKLYIWPYNN 209 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~----~h-----~s~V~sVafSpdG~--~LasgSdd~V~IWDlrt 209 (792)
.++.|+. |...++++ .|-.|.+|++........+ .+ ..-|++..|||... +..+++.+.|++-|++.
T Consensus 176 NSiS~Ns-D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 176 NSISFNS-DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred eeeeecC-chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 8899988 77777764 5778999998753222221 12 23478889999753 45556677799999984
Q ss_pred CCcccCCe-------------EEecCCCCeEEEEEccCCCeEEE----EEeeCccccCCCc
Q 036953 210 KEEASSPI-------------IVLKTRRSLRAVHFHPHAAPFVL----TAEVNDLDSSDSS 253 (792)
Q Consensus 210 ~~~~~~~~-------------~~~~h~~sVtsVafSPdG~~Lla----S~s~~dLrs~d~~ 253 (792)
...-..+. .+..-.+.|..+.|+++|+++++ +-..||++.....
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~p 314 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNP 314 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCC
Confidence 32111000 01112467899999999997765 4446666654433
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.67 E-value=0.00014 Score=76.57 Aligned_cols=74 Identities=27% Similarity=0.411 Sum_probs=64.1
Q ss_pred CCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc-EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 96 RSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN-CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 96 ~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk-~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
+.|.+++-+| ....+++|+.||.+-+||.+... ++..++.|+..|+.+-|+|.++..|+++++||.+..||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 4599999999 55677788899999999998663 34556789999999999999999999999999999999875
No 279
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.66 E-value=7.4e-05 Score=55.65 Aligned_cols=34 Identities=35% Similarity=0.464 Sum_probs=31.9
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIID 123 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWD 123 (792)
.+.+|...|++++|+|++++|++++.|+.|++||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3568999999999999999999999999999997
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.66 E-value=0.0019 Score=81.64 Aligned_cols=115 Identities=19% Similarity=0.283 Sum_probs=83.3
Q ss_pred CeEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecC-------------C--------CCCcEEEEEccCCCCEEE
Q 036953 97 STIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSG-------------H--------RRTPWVVRFHPLRSEILA 154 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~g-------------H--------~~~VtsVafSP~dg~lLa 154 (792)
....++|+|+++.|+++ +.++.|++||+.++.......+ + -....+++|++ ++++++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYV 819 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYV 819 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEE
Confidence 35679999999865544 5678999999987653211100 0 11346899999 888999
Q ss_pred EEeCCCeEEEEECCCCcEEEEecc--------------CCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCc
Q 036953 155 SGSLDHEVRLWDANTSECIGSCDF--------------YRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEE 212 (792)
Q Consensus 155 SgS~DgtVrLWDl~tg~~v~t~~h--------------~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~ 212 (792)
+-..++.|++||..++........ ......++++++|+++++-+ ++.|++||+++.+.
T Consensus 820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 999999999999988766544321 12467899999999777665 55699999988764
No 281
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.64 E-value=0.00025 Score=76.18 Aligned_cols=203 Identities=14% Similarity=0.218 Sum_probs=125.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-E----EEEecCCC------------CCcEEEEEcc-CCCCEEEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN-C----LKVLSGHR------------RTPWVVRFHP-LRSEILASG 156 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk-~----v~~L~gH~------------~~VtsVafSP-~dg~lLaSg 156 (792)
.+-|+++.|...|.+|++|...|.|.+|.-.... | ...|++|. ..|..+.|-. .+-..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3558999999999999999999999999754321 2 23355554 3567788764 233566777
Q ss_pred eCCCeEEEEECCCCc-------------------EE-----------------------EEe--ccCCCeeEEEEcCCCc
Q 036953 157 SLDHEVRLWDANTSE-------------------CI-----------------------GSC--DFYRPIASIAFHAEGE 192 (792)
Q Consensus 157 S~DgtVrLWDl~tg~-------------------~v-----------------------~t~--~h~s~V~sVafSpdG~ 192 (792)
+.|++|++|.+.... ++ +.+ .|.-.+++++|+.|.+
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 899999999886431 00 001 1333578999999999
Q ss_pred EEEEEcCCeEEEEECCCCCcccCCeEEecC-----CCCeEEEEEccCCCeEEE-EEeeCccccCCCceeeecCCCcccCC
Q 036953 193 LLAVASGHKLYIWPYNNKEEASSPIIVLKT-----RRSLRAVHFHPHAAPFVL-TAEVNDLDSSDSSMTRATSPGYLRYP 266 (792)
Q Consensus 193 ~LasgSdd~V~IWDlrt~~~~~~~~~~~~h-----~~sVtsVafSPdG~~Lla-S~s~~dLrs~d~~~~l~t~sg~~~~p 266 (792)
.++++.+-+|.+|++..........-...| ..-|++..|||....++. +++-..|...|.+..- -+ .
T Consensus 186 t~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~a----lc---d 258 (460)
T COG5170 186 TLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSA----LC---D 258 (460)
T ss_pred eeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhh----hc---c
Confidence 999988888999999766533212222222 245889999997665443 4433334333222100 00 0
Q ss_pred CCceEEEEecCCCEEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 267 PPAVFVANAQSGDHVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 267 ~~~~~l~~~ssG~~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.+...+....++...... .+-...|.++.|+++||+|+
T Consensus 259 n~~klfe~~~D~v~~~ff------~eivsSISD~kFs~ngryIl 296 (460)
T COG5170 259 NSKKLFELTIDGVDVDFF------EEIVSSISDFKFSDNGRYIL 296 (460)
T ss_pred CchhhhhhccCcccchhH------HHHhhhhcceEEcCCCcEEE
Confidence 001111111233333333 33677899999999999999
No 282
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=6e-05 Score=89.20 Aligned_cols=159 Identities=15% Similarity=0.165 Sum_probs=117.4
Q ss_pred CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCC--eEEEEEC
Q 036953 90 PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH--EVRLWDA 167 (792)
Q Consensus 90 ~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg--tVrLWDl 167 (792)
.+..|....+|++|+-+.++|+.|+..|.|++|++.+|.......+|..+|+.+.-+. ++..+++.+.-. -..+|++
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~-dgs~~Ltsss~S~PlsaLW~~ 1174 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSV-DGSTQLTSSSSSSPLSALWDA 1174 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccC-CcceeeeeccccCchHHHhcc
Confidence 3556788899999999999999999999999999999999999999999999999888 777776655433 3679998
Q ss_pred CC-CcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeE-EecCCCCeEEEEEccCCCeEEEEEee
Q 036953 168 NT-SECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPII-VLKTRRSLRAVHFHPHAAPFVLTAEV 244 (792)
Q Consensus 168 ~t-g~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~-~~~h~~sVtsVafSPdG~~LlaS~s~ 244 (792)
.. +.+..+|.. -.++.|+..-..-+.|. .+...|||+.+......... .......-+.+.|+|+.+.++--+-+
T Consensus 1175 ~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndGvL 1251 (1516)
T KOG1832|consen 1175 SSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDGVL 1251 (1516)
T ss_pred ccccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCcee
Confidence 65 445555533 34567776654444444 45699999998875432111 11223344788999999966666669
Q ss_pred CccccCCC
Q 036953 245 NDLDSSDS 252 (792)
Q Consensus 245 ~dLrs~d~ 252 (792)
||++....
T Consensus 1252 WDvR~~~a 1259 (1516)
T KOG1832|consen 1252 WDVRIPEA 1259 (1516)
T ss_pred eeeccHHH
Confidence 99997643
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.60 E-value=0.0039 Score=78.94 Aligned_cols=141 Identities=15% Similarity=0.183 Sum_probs=90.6
Q ss_pred eEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCC---------------CCCcEEEEEccCCCC-EEEEEeCCC
Q 036953 98 TIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGH---------------RRTPWVVRFHPLRSE-ILASGSLDH 160 (792)
Q Consensus 98 V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH---------------~~~VtsVafSP~dg~-lLaSgS~Dg 160 (792)
...++|+| ++..+++...++.|++||..++... .+.+. -....+++|+| +++ ++++-+.++
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~ 762 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESS 762 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCC
Confidence 46899999 5666677777899999998776532 22211 12456799999 666 666667789
Q ss_pred eEEEEECCCCcEEEEe-------------c-c--------CCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCe
Q 036953 161 EVRLWDANTSECIGSC-------------D-F--------YRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPI 217 (792)
Q Consensus 161 tVrLWDl~tg~~v~t~-------------~-h--------~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~ 217 (792)
.|++||+.++...... . . ......++++++|+++++-. +++|++||..++.......
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG 842 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG 842 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec
Confidence 9999999876532111 0 0 01245889999998766666 5669999997765321000
Q ss_pred E----------EecCCCCeEEEEEccCCCeEEE
Q 036953 218 I----------VLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 218 ~----------~~~h~~sVtsVafSPdG~~Lla 240 (792)
. ....-.....++++++|+.+++
T Consensus 843 ~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 843 TGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred cCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 0 0001124668889998874443
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.58 E-value=0.0028 Score=67.37 Aligned_cols=166 Identities=10% Similarity=-0.046 Sum_probs=107.7
Q ss_pred cEEEEEeCCCeEEEEeccCCC-----cCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEE
Q 036953 70 RGLVSWVEAESLRHLSAKYCP-----LVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVV 143 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~-----L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsV 143 (792)
..|+.++..+.+.+|...+++ ...|...|+-+.=.. ....+..++.|+++++.++..+.....+.-..-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 355666666677777665442 122333222221111 22356778899999999987554332222111237889
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCC-c-EEEEe--ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccC--C
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTS-E-CIGSC--DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASS--P 216 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg-~-~v~t~--~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~--~ 216 (792)
.+++ |++++++.+....|..|.+... + .+... ...+.--+..|+.....+|++. ++.+.|||++....... .
T Consensus 165 ~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 165 HYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred EEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 9999 9999999999999999988753 2 23322 2444556788999999999999 55699999987653321 1
Q ss_pred eEEecCCCCeEEEEEccCCC
Q 036953 217 IIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 217 ~~~~~h~~sVtsVafSPdG~ 236 (792)
.....|.+.++.+.|++.|.
T Consensus 244 strp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred ccCCCCCCceEEEEecCCCc
Confidence 12234889999999998664
No 285
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.55 E-value=0.011 Score=67.28 Aligned_cols=218 Identities=11% Similarity=0.103 Sum_probs=135.3
Q ss_pred CCCCCceEeeeccccee-eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc----CCC
Q 036953 20 HLRRRARNVSRLLAHRE-ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL----VPP 94 (792)
Q Consensus 20 s~~s~~r~V~~l~~~re-ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L----~gH 94 (792)
+.....+.+|....+.. .......|.-+.++|.++++.+-...... +-.....-...++.+.+||...+.+ ..-
T Consensus 49 ~~~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~-~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~ 127 (561)
T COG5354 49 SEHAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPII-EPEIEISPFTSKNNVFVWDIASGMIVFSFNGI 127 (561)
T ss_pred hhhccceEEccccchhheeeeecCCceecccCcccceeeeeccCCcc-ChhhccCCccccCceeEEeccCceeEeecccc
Confidence 34566778887665543 33444567778889998887654322221 2222333333444688888887743 222
Q ss_pred CCC--eE-EEEEcCCCCEEEEEECCCeEEEEECCCCcEE-EEecCC-CCCcEEEEEccC-CCCEEEE-----EeCCCeEE
Q 036953 95 PRS--TI-AAAFSPDGRTLASTHGDHTVKIIDCQTGNCL-KVLSGH-RRTPWVVRFHPL-RSEILAS-----GSLDHEVR 163 (792)
Q Consensus 95 ~~~--V~-sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v-~~L~gH-~~~VtsVafSP~-dg~lLaS-----gS~DgtVr 163 (792)
..+ .. -+.|+.+.+++|--.. ..++|+++ +.... .-+..- ...|....|+|. +...|+. .+.+++++
T Consensus 128 ~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~ 205 (561)
T COG5354 128 SQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVR 205 (561)
T ss_pred CCcccccceeeeeecchhhhhhcc-CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEE
Confidence 222 33 6788888887765543 36999997 43321 111111 246778888883 3344443 35678899
Q ss_pred EEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc------------CCeEEEEECCCCCcccCCeEEecCCCCeEEEE
Q 036953 164 LWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS------------GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVH 230 (792)
Q Consensus 164 LWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS------------dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVa 230 (792)
+|.+..++.+.+.. ..-.-..+.|++.|++|++-- ...++|+++..... + ......++|...+
T Consensus 206 i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~-V~~~~~~pVhdf~ 281 (561)
T COG5354 206 ILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI---P-VEKDLKDPVHDFT 281 (561)
T ss_pred EEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc---c-eeccccccceeee
Confidence 99998777665542 333345789999998776531 13489999874432 1 2225688999999
Q ss_pred EccCCCeEEEEEee
Q 036953 231 FHPHAAPFVLTAEV 244 (792)
Q Consensus 231 fSPdG~~LlaS~s~ 244 (792)
|.|+++.+++..+.
T Consensus 282 W~p~S~~F~vi~g~ 295 (561)
T COG5354 282 WEPLSSRFAVISGY 295 (561)
T ss_pred ecccCCceeEEecc
Confidence 99999988887753
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=97.51 E-value=0.00026 Score=89.20 Aligned_cols=137 Identities=13% Similarity=0.173 Sum_probs=105.1
Q ss_pred EEEEEeCCCeEEEEeccCCC------cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE
Q 036953 71 GLVSWVEAESLRHLSAKYCP------LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR 144 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~------L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa 144 (792)
..++++.|+.+++|.-..++ ..+. ..|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+.|.....+++
T Consensus 2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~ 2299 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFR 2299 (2439)
T ss_pred eEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCcccccee
Confidence 44555556666655543221 1233 779999999999999999999999999987 667777889999999999
Q ss_pred EccCCCCEEEEEe---CCCeEEEEECCCC---cEEEEeccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcc
Q 036953 145 FHPLRSEILASGS---LDHEVRLWDANTS---ECIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEA 213 (792)
Q Consensus 145 fSP~dg~lLaSgS---~DgtVrLWDl~tg---~~v~t~~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~ 213 (792)
|-. ..+++.+ .++.+.+||..-. .++. ..|.+.++++++-|..++|++|+. +.|++||++..+..
T Consensus 2300 Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2300 FIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred eee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence 964 6777765 5678999997542 2333 468999999999999999999994 45999999887754
No 287
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00068 Score=77.49 Aligned_cols=136 Identities=14% Similarity=0.194 Sum_probs=103.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-----------CCeEEEE
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-----------DHEVRLW 165 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-----------DgtVrLW 165 (792)
.-+-+.|||-|.+|++-...| |.+|--.+-..++.|. |. .|.-+.|+| ..++|+|-+. -..++||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCC-ccceEEEecCCccccCcccCCCceEEEE
Confidence 456799999999999999987 8899876666666675 76 488899999 9999998652 1569999
Q ss_pred ECCCCcEEEEecc---CCCe-eEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 166 DANTSECIGSCDF---YRPI-ASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 166 Dl~tg~~v~t~~h---~s~V-~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
|+++|...+.|.. ...+ .-+.||.|++++|.-..+.|.||+..+..... ...-.-..|....|+|.+..|+
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld---~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeec---ccccCCccccCcccCCCcceEE
Confidence 9999988887742 2222 24689999999999888889999986644221 0011245688999999988554
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.48 E-value=0.035 Score=58.12 Aligned_cols=141 Identities=18% Similarity=0.207 Sum_probs=92.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECC--------CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEE-EEEeCCCeEEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGD--------HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEIL-ASGSLDHEVRLW 165 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~D--------GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lL-aSgS~DgtVrLW 165 (792)
....+.+++.++|+..++.... |.|..++.. ++...... .-....+++|+| +++.| ++-+..+.|..+
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~ 161 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSP-DGKTLYVADSFNGRIWRF 161 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEET-TSSEEEEEETTTTEEEEE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECC-cchheeecccccceeEEE
Confidence 3458899999999977776643 457777766 55443333 456678999999 77655 466778889999
Q ss_pred ECCCCc--E--EEEe---ccC-CCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEE-ccCC
Q 036953 166 DANTSE--C--IGSC---DFY-RPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHF-HPHA 235 (792)
Q Consensus 166 Dl~tg~--~--v~t~---~h~-s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVaf-SPdG 235 (792)
|+.... . ...+ ... +....++++.+|++.++.. .++|.++|.+ ++... .... ....+++++| -++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~--~i~~-p~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 162 DLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR--EIEL-PVPRPTNCAFGGPDG 237 (246)
T ss_dssp EEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE--EEE--SSSSEEEEEEESTTS
T ss_pred eccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE--EEcC-CCCCEEEEEEECCCC
Confidence 986422 1 1112 222 2478899999998766654 6779999987 55332 1222 2358999999 5777
Q ss_pred CeEEEEE
Q 036953 236 APFVLTA 242 (792)
Q Consensus 236 ~~LlaS~ 242 (792)
+.|++++
T Consensus 238 ~~L~vTt 244 (246)
T PF08450_consen 238 KTLYVTT 244 (246)
T ss_dssp SEEEEEE
T ss_pred CEEEEEe
Confidence 7777765
No 289
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.45 E-value=0.0015 Score=78.25 Aligned_cols=173 Identities=12% Similarity=0.101 Sum_probs=118.2
Q ss_pred EEeCCCeEEEEeccCCCcC--CC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCC
Q 036953 74 SWVEAESLRHLSAKYCPLV--PP--PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLR 149 (792)
Q Consensus 74 S~s~d~sIrvWd~~t~~L~--gH--~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~d 149 (792)
-+.-.+.+..+|..+.+.. .+ ...|.-|+. +++.+.+|...|+|.+-|.++.+.+++|.+|.+.|.++.. .
T Consensus 152 ~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv---~ 226 (1118)
T KOG1275|consen 152 MGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV---Q 226 (1118)
T ss_pred ecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec---c
Confidence 3333444555666544321 11 223666665 5889999999999999999999999999999999988877 4
Q ss_pred CCEEEEEeCC---------CeEEEEECCCCcEEEEeccCCCeeEEEEcCCC-cEEEEEc-CCeEEEEECCCCCcccC-Ce
Q 036953 150 SEILASGSLD---------HEVRLWDANTSECIGSCDFYRPIASIAFHAEG-ELLAVAS-GHKLYIWPYNNKEEASS-PI 217 (792)
Q Consensus 150 g~lLaSgS~D---------gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG-~~LasgS-dd~V~IWDlrt~~~~~~-~~ 217 (792)
+++|++||.. ..|++||++.-+.+.-+.......-+.|+|.- ..+++++ .+...+.|..+...... ..
T Consensus 227 GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~ 306 (1118)
T KOG1275|consen 227 GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK 306 (1118)
T ss_pred CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCcccee
Confidence 6899999854 45899999987776666544444567788864 3444444 66688888443332211 12
Q ss_pred EEecCCCCeEEEEEccCCCeEEEEEeeCccccCC
Q 036953 218 IVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSD 251 (792)
Q Consensus 218 ~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d 251 (792)
........+..++++++++.++.+-..+.|..|.
T Consensus 307 ~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 307 MVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2233445599999999999888777666555543
No 290
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=97.43 E-value=0.00046 Score=80.81 Aligned_cols=180 Identities=18% Similarity=0.244 Sum_probs=122.7
Q ss_pred eeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC-------CcCCCCCCeEEEEEcC-CCCEEEEEE
Q 036953 43 YVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC-------PLVPPPRSTIAAAFSP-DGRTLASTH 114 (792)
Q Consensus 43 ~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~-------~L~gH~~~V~sLafSP-DG~~LaSGS 114 (792)
.+..+.|++... ....+++++..++ .+|+.... -+.+|..+|+.+.|+| ....+++++
T Consensus 69 ~vad~qws~h~a-------------~~~wiVsts~qka-iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs 134 (1081)
T KOG0309|consen 69 QVADVQWSPHPA-------------KPYWIVSTSNQKA-IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS 134 (1081)
T ss_pred hhcceecccCCC-------------CceeEEecCcchh-hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc
Confidence 455666666632 2234455554444 35655322 2568999999999999 566889999
Q ss_pred CCCeEEEEECCCCc-EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-cEEEEe-ccCCCeeEEEEcCCC
Q 036953 115 GDHTVKIIDCQTGN-CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-ECIGSC-DFYRPIASIAFHAEG 191 (792)
Q Consensus 115 ~DGtVrIWDl~tgk-~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-~~v~t~-~h~s~V~sVafSpdG 191 (792)
.|-.+..||+++-. .+..+..-......|.|+..++..+++ +..+.|++||++.+ .++..+ .+...++.++|..--
T Consensus 135 vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~ 213 (1081)
T KOG0309|consen 135 VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK 213 (1081)
T ss_pred ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh-ccCCceEEEeccCCCcceEEecccceeeehHHHhhhh
Confidence 99999999998753 555555555567789999867776665 56778999999986 455555 477788888887643
Q ss_pred --cEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 192 --ELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 192 --~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
..+-++.++.|+.||..+..... ........+|..-+|-|-|+-.+
T Consensus 214 ~s~~~s~~~d~tvkfw~y~kSt~e~--~~~vtt~~piw~~r~~Pfg~g~~ 261 (1081)
T KOG0309|consen 214 YSEIMSSSNDGTVKFWDYSKSTTES--KRTVTTNFPIWRGRYLPFGEGYC 261 (1081)
T ss_pred hhhhcccCCCCceeeeccccccccc--ceeccccCcceeccccccCceeE
Confidence 33444446779999997765432 23344567777778888665433
No 291
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0013 Score=72.91 Aligned_cols=151 Identities=19% Similarity=0.187 Sum_probs=107.6
Q ss_pred cCCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 91 LVPPPRSTIAAAFSPDGR-TLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~-~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
+..|...|..++|||..+ .+..++.+.+|+|.|+.+..++..+..+ ..+++++|.-++.+++..|-.+|.|.+||++.
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 456778899999999665 7888999999999999999999888877 78999999997778888888999999999987
Q ss_pred Cc-EEEEec---cCCCeeEEEEc------CCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 170 SE-CIGSCD---FYRPIASIAFH------AEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 170 g~-~v~t~~---h~s~V~sVafS------pdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
.+ ++..+. ...+|..++.- +.|-+|+.++. .+..|++........+.......+.+.+..+++..+.++
T Consensus 268 ~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l 346 (463)
T KOG1645|consen 268 PEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLL 346 (463)
T ss_pred CCchHhhhhhhhccCcceeecccCccccccccceEEeeeh-hhhhhhhhccccCCCcccccCCCcceeeeeecCccceEE
Confidence 43 222221 22344444332 33444544443 378888765544332223344456677888888778888
Q ss_pred EEEe
Q 036953 240 LTAE 243 (792)
Q Consensus 240 aS~s 243 (792)
++..
T Consensus 347 ~tyR 350 (463)
T KOG1645|consen 347 LTYR 350 (463)
T ss_pred EEec
Confidence 7765
No 292
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.39 E-value=0.0025 Score=73.75 Aligned_cols=113 Identities=15% Similarity=0.177 Sum_probs=81.9
Q ss_pred CCeEEEEEcC-CCCEEEEE----ECCCe----EEEEECCCCcEE----EEecCCCCCcEEEEEccCCCCEEEEEeCCCeE
Q 036953 96 RSTIAAAFSP-DGRTLAST----HGDHT----VKIIDCQTGNCL----KVLSGHRRTPWVVRFHPLRSEILASGSLDHEV 162 (792)
Q Consensus 96 ~~V~sLafSP-DG~~LaSG----S~DGt----VrIWDl~tgk~v----~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtV 162 (792)
....++.||. +...+.+- +.+|. -.+|++..++.. ..+ .....|.+++++| +.+.++.|+.||.|
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp-~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSP-SEDKLVLGCEDGSI 283 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCc-ccceEEEEecCCeE
Confidence 3456778877 55555543 23443 356776655421 222 4778999999999 89999999999999
Q ss_pred EEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCC
Q 036953 163 RLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKE 211 (792)
Q Consensus 163 rLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~ 211 (792)
.+||...+..... ...-..+.++|||+|.+|++|++ +.|.+||+.-..
T Consensus 284 iLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 9999987643322 44556789999999999999996 559999986543
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.00016 Score=85.69 Aligned_cols=173 Identities=14% Similarity=0.127 Sum_probs=121.2
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCC----cCCCCCCeEEEEEcCCCCEEEEEECCC--eEEEEECCC-CcEEEEecCCCCC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCP----LVPPPRSTIAAAFSPDGRTLASTHGDH--TVKIIDCQT-GNCLKVLSGHRRT 139 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~----L~gH~~~V~sLafSPDG~~LaSGS~DG--tVrIWDl~t-gk~v~~L~gH~~~ 139 (792)
.+...|+.+.-.+.|+++++.++. ..+|...|+-+.-+.||..+++.+.-. -..+|++.+ +...+.|.+
T Consensus 1111 ~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e---- 1186 (1516)
T KOG1832|consen 1111 GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE---- 1186 (1516)
T ss_pred cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCccccccc----
Confidence 355667777888899999998774 567889999999888999877665432 467999864 445555553
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-----cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCccc
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-----FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEAS 214 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-----h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~ 214 (792)
-.++.|+. ....-+.|.......+||+.++.++.++- ..-.-+...|+|+.++++--+ .+||++..+.+.
T Consensus 1187 d~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndG----vLWDvR~~~aIh 1261 (1516)
T KOG1832|consen 1187 DKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDG----VLWDVRIPEAIH 1261 (1516)
T ss_pred cceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCc----eeeeeccHHHHh
Confidence 34688887 33444444445678999999988776641 222336788999988776422 699999886543
Q ss_pred CCeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCC
Q 036953 215 SPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDS 252 (792)
Q Consensus 215 ~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~ 252 (792)
.+......+. -.|||+|..++..+.+||+++...
T Consensus 1262 ---~FD~ft~~~~-G~FHP~g~eVIINSEIwD~RTF~l 1295 (1516)
T KOG1832|consen 1262 ---RFDQFTDYGG-GGFHPSGNEVIINSEIWDMRTFKL 1295 (1516)
T ss_pred ---hhhhheeccc-ccccCCCceEEeechhhhhHHHHH
Confidence 2222223332 359999999999999999997543
No 294
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0025 Score=75.77 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=106.1
Q ss_pred CcEEEEEeCCCeEEEEeccCC--CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEc
Q 036953 69 KRGLVSWVEAESLRHLSAKYC--PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFH 146 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~--~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafS 146 (792)
+..+.-+.-.+.+.+.+.... +...|... ..+|.+++||+.||+|.|..+-+.+...++. -..++.+++++
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~ 121 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNPKTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALH 121 (846)
T ss_pred cceeeeccccceEEEEecCCccccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEec
Confidence 344444455556666554432 11223222 4589999999999999999998888777665 45789999999
Q ss_pred cC----CCCEEEEEeCCCeEEEEECCC---CcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCC---
Q 036953 147 PL----RSEILASGSLDHEVRLWDANT---SECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSP--- 216 (792)
Q Consensus 147 P~----dg~lLaSgS~DgtVrLWDl~t---g~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~--- 216 (792)
|+ ..+.+++|+..| +.++.-+- ...+..-...++|.+++| .|+++|-++|.+|++||+...+.....
T Consensus 122 Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~p 198 (846)
T KOG2066|consen 122 PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPPP 198 (846)
T ss_pred cchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCCC
Confidence 92 367899999888 77775432 233323357789999998 488999999999999999887653211
Q ss_pred eEEecCCCCeEEEEEccCCC
Q 036953 217 IIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 217 ~~~~~h~~sVtsVafSPdG~ 236 (792)
.........-..+.|.++.+
T Consensus 199 ~~~~R~e~fpphl~W~~~~~ 218 (846)
T KOG2066|consen 199 SQSVRPELFPPHLHWQDEDR 218 (846)
T ss_pred CCCCCcccCCCceEecCCCe
Confidence 10001112234678877665
No 295
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.35 E-value=0.0027 Score=69.32 Aligned_cols=183 Identities=15% Similarity=0.178 Sum_probs=112.3
Q ss_pred CCCCCceEeeecccceeeC-----CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCcCCC
Q 036953 20 HLRRRARNVSRLLAHREIS-----PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPLVPP 94 (792)
Q Consensus 20 s~~s~~r~V~~l~~~rels-----~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L~gH 94 (792)
.+..+..+||-...-.+.+ ...+.+..+...+....+.+|...+. ..-++.++|-.--. .......|
T Consensus 42 ~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt-----vtefs~sedfnkm~---~~r~~~~h 113 (404)
T KOG1409|consen 42 VSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT-----VTEFALSEDFNKMT---FLKDYLAH 113 (404)
T ss_pred ccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce-----EEEEEhhhhhhhcc---hhhhhhhh
Confidence 3455556666433333333 23345566666666655555532222 23333333211000 00122356
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEEC------------------------------------------CCCcEEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDC------------------------------------------QTGNCLKV 132 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl------------------------------------------~tgk~v~~ 132 (792)
...|..+-|+-...++++.+.|+.+. |-. +.-..+..
T Consensus 114 ~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~ 192 (404)
T KOG1409|consen 114 QARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT 192 (404)
T ss_pred hcceeeEEecCCceeEEEeccccceE-EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence 66677777776666666666654332 111 11123456
Q ss_pred ecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc--EEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCC
Q 036953 133 LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE--CIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNN 209 (792)
Q Consensus 133 L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~--~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt 209 (792)
+.+|.+.+.++.|.+ ...+|++|..|..+.+||+-.++ ....+.|...|..+.+-+.-+.|.+++ |+.|-+||++.
T Consensus 193 ~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 779999999999999 88999999999999999997543 334456888888888877777777777 66699999987
Q ss_pred CCc
Q 036953 210 KEE 212 (792)
Q Consensus 210 ~~~ 212 (792)
...
T Consensus 272 ~r~ 274 (404)
T KOG1409|consen 272 KRV 274 (404)
T ss_pred eee
Confidence 654
No 296
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.33 E-value=0.049 Score=59.71 Aligned_cols=194 Identities=21% Similarity=0.181 Sum_probs=119.8
Q ss_pred CeEEEEEcC-CCCEEEEEECCCe-EEEEECCCCcEEEEecCCCCCc--EEEEEccCCCCEEEEEeCC-----CeEEEEEC
Q 036953 97 STIAAAFSP-DGRTLASTHGDHT-VKIIDCQTGNCLKVLSGHRRTP--WVVRFHPLRSEILASGSLD-----HEVRLWDA 167 (792)
Q Consensus 97 ~V~sLafSP-DG~~LaSGS~DGt-VrIWDl~tgk~v~~L~gH~~~V--tsVafSP~dg~lLaSgS~D-----gtVrLWDl 167 (792)
....++.+| +...++.+-.-|+ ..+||..+++....+....+.- -.-+|++ |+++|++.-.| |.|-+||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345778888 5666667766554 6789999998877665332221 1368999 99999987554 67999999
Q ss_pred C-CCcEEEEec-cCCCeeEEEEcCCCcEEEEEcCC-------------------eEEEEECCCCCcccCCeEE--ecCCC
Q 036953 168 N-TSECIGSCD-FYRPIASIAFHAEGELLAVASGH-------------------KLYIWPYNNKEEASSPIIV--LKTRR 224 (792)
Q Consensus 168 ~-tg~~v~t~~-h~s~V~sVafSpdG~~LasgSdd-------------------~V~IWDlrt~~~~~~~~~~--~~h~~ 224 (792)
. +-+.+..|. +.-..-.+.+.|||+.|+++..+ .|-..|..+++... ...+ ..|.-
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~-q~~Lp~~~~~l 163 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE-QVELPPDLHQL 163 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceee-eeecCcccccc
Confidence 9 456666664 44455678899999998887532 13444555555432 1112 23567
Q ss_pred CeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCC-EEEEeeccCcccCCCceEEEeEEC
Q 036953 225 SLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGD-HVSLAAELPLMSSLPFLIVPSVSI 303 (792)
Q Consensus 225 sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~-~~~l~s~l~~l~gh~~~VwdV~~S 303 (792)
+|..++++++|. +..+..|.-...+ .++.+.+. ..|. ...+.............+=+|+++
T Consensus 164 SiRHLa~~~~G~--V~~a~Q~qg~~~~--------------~~PLva~~--~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~ 225 (305)
T PF07433_consen 164 SIRHLAVDGDGT--VAFAMQYQGDPGD--------------APPLVALH--RRGGALRLLPAPEEQWRRLNGYIGSIAAD 225 (305)
T ss_pred ceeeEEecCCCc--EEEEEecCCCCCc--------------cCCeEEEE--cCCCcceeccCChHHHHhhCCceEEEEEe
Confidence 899999999987 3334444222111 11222222 2233 222222222333456778889999
Q ss_pred CCCcEEE
Q 036953 304 DDSRIDL 310 (792)
Q Consensus 304 pDGr~lv 310 (792)
++|.+++
T Consensus 226 ~~g~~ia 232 (305)
T PF07433_consen 226 RDGRLIA 232 (305)
T ss_pred CCCCEEE
Confidence 9998886
No 297
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.003 Score=70.20 Aligned_cols=94 Identities=17% Similarity=0.265 Sum_probs=76.7
Q ss_pred EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcE-EEEE
Q 036953 119 VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGEL-LAVA 197 (792)
Q Consensus 119 VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~-Lasg 197 (792)
|++.+..+-+....+.+|...|.+++|+|.+..++..++.+++|++.|+++..++..+.....+++++|+.|... |+.|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 566665555556667789999999999995555899999999999999999999988887799999999988754 5555
Q ss_pred c-CCeEEEEECCCCCc
Q 036953 198 S-GHKLYIWPYNNKEE 212 (792)
Q Consensus 198 S-dd~V~IWDlrt~~~ 212 (792)
- .+.|+|||++..+.
T Consensus 255 l~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEG 270 (463)
T ss_pred ccCceEEEEEccCCCc
Confidence 4 45599999988764
No 298
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=97.30 E-value=0.02 Score=71.61 Aligned_cols=172 Identities=13% Similarity=0.203 Sum_probs=108.5
Q ss_pred cEEEEEeCCCeEEEE----eccCCC--cC-CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC---------------C-
Q 036953 70 RGLVSWVEAESLRHL----SAKYCP--LV-PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ---------------T- 126 (792)
Q Consensus 70 ~~L~S~s~d~sIrvW----d~~t~~--L~-gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~---------------t- 126 (792)
..++.+..+|.|.+. +..... .. .-..+|.+++||||+..|+....++++.+.+-. .
T Consensus 88 ~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~ 167 (928)
T PF04762_consen 88 ESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGES 167 (928)
T ss_pred CcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCC
Confidence 345555666666666 333322 12 235689999999999999999999988776532 0
Q ss_pred -------CcEEEEecC------------------------CCCCcEEEEEccCCCCEEEEEeC---C---CeEEEEECCC
Q 036953 127 -------GNCLKVLSG------------------------HRRTPWVVRFHPLRSEILASGSL---D---HEVRLWDANT 169 (792)
Q Consensus 127 -------gk~v~~L~g------------------------H~~~VtsVafSP~dg~lLaSgS~---D---gtVrLWDl~t 169 (792)
|+...+|.| +...-..++|-. |+.+++..+. + ..+|+|+-+
T Consensus 168 ~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re- 245 (928)
T PF04762_consen 168 KHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE- 245 (928)
T ss_pred ceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-
Confidence 111122221 111334588988 9999998775 2 569999875
Q ss_pred CcEEEEec-cCCCeeEEEEcCCCcEEEEEcC--C--eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 170 SECIGSCD-FYRPIASIAFHAEGELLAVASG--H--KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 170 g~~v~t~~-h~s~V~sVafSpdG~~LasgSd--d--~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
|....+-+ ..+--..++|-|.|++||+.-. + .|.+|.-+..+..............|..+.|++|+..|++...
T Consensus 246 G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~ 324 (928)
T PF04762_consen 246 GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLE 324 (928)
T ss_pred ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEec
Confidence 55443332 2233347899999999999862 2 2777775544432211111134567999999999997776553
No 299
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.002 Score=76.50 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=104.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
.+.++|++++ ++.|+-|.-+|.|++++.... . .+...|... . .+|.+++||+.||+|.+-.+-+.+...
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~-~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------I-LEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------c-cCCceEEEecCCCcEEEeeccCCccce
Confidence 4567788886 789999999999999997643 3 333345543 3 389999999999999999999999989
Q ss_pred EeccCCCeeEEEEcCC-----CcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCcccc
Q 036953 175 SCDFYRPIASIAFHAE-----GELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDS 249 (792)
Q Consensus 175 t~~h~s~V~sVafSpd-----G~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs 249 (792)
++.+..++.+++++|+ .+.+++|+..++.++.-+-.+... ........++|.++.|. |+ +++-+.+..++.
T Consensus 108 ~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~-~v~l~~~eG~I~~i~W~--g~-lIAWand~Gv~v 183 (846)
T KOG2066|consen 108 QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKD-SVVLSEGEGPIHSIKWR--GN-LIAWANDDGVKV 183 (846)
T ss_pred eEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCcc-ceeeecCccceEEEEec--Cc-EEEEecCCCcEE
Confidence 9999999999999998 467888885557777654433322 23455678999999997 66 444444444443
Q ss_pred CC
Q 036953 250 SD 251 (792)
Q Consensus 250 ~d 251 (792)
.+
T Consensus 184 yd 185 (846)
T KOG2066|consen 184 YD 185 (846)
T ss_pred Ee
Confidence 33
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.28 E-value=0.0007 Score=73.78 Aligned_cols=110 Identities=11% Similarity=0.142 Sum_probs=88.5
Q ss_pred CcEEEEEeCCCeEEEEeccCC--------CcCCCCCCeEEEEEcC-CCCEEEEEECCCeEEEEECCCCcE---EEEecCC
Q 036953 69 KRGLVSWVEAESLRHLSAKYC--------PLVPPPRSTIAAAFSP-DGRTLASTHGDHTVKIIDCQTGNC---LKVLSGH 136 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~--------~L~gH~~~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk~---v~~L~gH 136 (792)
+..++.+...+.|..+|.+.. +..-|...|+++..-. ++++|.+.+.+|+|++||++--++ +.++.||
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH 343 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH 343 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc
Confidence 456777788888988888754 2345888999998777 889999999999999999987776 8899999
Q ss_pred CCCcEEE--EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC
Q 036953 137 RRTPWVV--RFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY 179 (792)
Q Consensus 137 ~~~VtsV--afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~ 179 (792)
-+.-.-+ -.++ ....+++++.|...|+|.++.+..+.++.+.
T Consensus 344 vN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 344 VNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred ccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 7644333 3345 6678888999999999999999999888644
No 301
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.24 E-value=0.017 Score=67.96 Aligned_cols=189 Identities=16% Similarity=0.212 Sum_probs=122.7
Q ss_pred eCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC----c--CCCCCCeEEEEEcCCCCEE
Q 036953 37 ISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP----L--VPPPRSTIAAAFSPDGRTL 110 (792)
Q Consensus 37 ls~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~----L--~gH~~~V~sLafSPDG~~L 110 (792)
+..+...|..+.|..+.. ++-+...++.|.+|-.-.+. + ...+..|.+|.|+.||.++
T Consensus 67 LeGH~~sV~vvTWNe~~Q----------------KLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kI 130 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNENNQ----------------KLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKI 130 (1189)
T ss_pred hccCcceEEEEEeccccc----------------cccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEE
Confidence 334445555556655543 34444567778888765542 1 2345568999999999999
Q ss_pred EEEECCCeEEEEECCCCcEE-EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-------cEEEEe-----c
Q 036953 111 ASTHGDHTVKIIDCQTGNCL-KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-------ECIGSC-----D 177 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~v-~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-------~~v~t~-----~ 177 (792)
...-.||.|.+=.++.++.- +.+++ .-...+.|++ |.+.++.+-.+|.++++|.... .+.... .
T Consensus 131 cIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~-D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~ 207 (1189)
T KOG2041|consen 131 CIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSE-DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSN 207 (1189)
T ss_pred EEEEccCCEEEEeeccceecchhcch--heccceeecc-cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecC
Confidence 99999999988776543321 12222 1234689999 8888888888999999997642 232221 1
Q ss_pred cCCCeeEEEEc--------CCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc
Q 036953 178 FYRPIASIAFH--------AEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD 248 (792)
Q Consensus 178 h~s~V~sVafS--------pdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr 248 (792)
+...|..+.|. ||...|+++.++ .+.|..-..... |.. ....-.|....|+++|..+++++.+.+-.
T Consensus 208 ~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~---Pvv-~dtgm~~vgakWnh~G~vLAvcG~~~da~ 283 (1189)
T KOG2041|consen 208 FPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE---PVV-VDTGMKIVGAKWNHNGAVLAVCGNDSDAD 283 (1189)
T ss_pred CCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC---CeE-EecccEeecceecCCCcEEEEccCccccc
Confidence 34456677774 477889999854 477765433332 333 33347788999999999888777655444
No 302
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.20 E-value=0.048 Score=61.10 Aligned_cols=111 Identities=22% Similarity=0.245 Sum_probs=81.7
Q ss_pred EEcC-CCCEEEEEECCCeEEEEECCCC-----cEEEEecC-------CCCCcEEEEEccCCCCEEEEEe----------C
Q 036953 102 AFSP-DGRTLASTHGDHTVKIIDCQTG-----NCLKVLSG-------HRRTPWVVRFHPLRSEILASGS----------L 158 (792)
Q Consensus 102 afSP-DG~~LaSGS~DGtVrIWDl~tg-----k~v~~L~g-------H~~~VtsVafSP~dg~lLaSgS----------~ 158 (792)
.|.+ +|++++.... |+|.+.|+... +....+.. ..+.+.-+++++ +++.++... .
T Consensus 200 ~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~ 277 (352)
T TIGR02658 200 AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTA 277 (352)
T ss_pred ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC-CCCEEEEEecCCccccccCC
Confidence 4566 8888877666 99999996433 22233221 223444599999 666666632 1
Q ss_pred CCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCc-EEEEEc--CCeEEEEECCCCCccc
Q 036953 159 DHEVRLWDANTSECIGSCDFYRPIASIAFHAEGE-LLAVAS--GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 159 DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~-~LasgS--dd~V~IWDlrt~~~~~ 214 (792)
.++|.++|..+++.+..+.....+..++++||++ +|++.. ++.|.++|..+.+...
T Consensus 278 ~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 278 SRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred CCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 2579999999999999998888999999999999 888776 3459999998887543
No 303
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.0094 Score=68.38 Aligned_cols=190 Identities=15% Similarity=0.171 Sum_probs=111.8
Q ss_pred ceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCC--CeEEEEeccCCC---cCCCCCCeEEEEEcCCCC
Q 036953 34 HREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEA--ESLRHLSAKYCP---LVPPPRSTIAAAFSPDGR 108 (792)
Q Consensus 34 ~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d--~sIrvWd~~t~~---L~gH~~~V~sLafSPDG~ 108 (792)
.+.+......+..-.|++++..++.- +.... ..+.+++..+++ +......-..-+|+|||+
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~--------------~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~ 250 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYV--------------SFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGS 250 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEE--------------EEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCC
Confidence 34444444556666777776654322 11111 235555655442 122233445678999999
Q ss_pred EEEEEE-CCCe--EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCe--EEEEECCCCcEEEEeccCCCe
Q 036953 109 TLASTH-GDHT--VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHE--VRLWDANTSECIGSCDFYRPI 182 (792)
Q Consensus 109 ~LaSGS-~DGt--VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~Dgt--VrLWDl~tg~~v~t~~h~s~V 182 (792)
+|+.++ .|+. |.++|+.+++ +..+..-.+.-+.-.|+| |++.++-.+ ..|. |.+.|++.++..........-
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~ 328 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN 328 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC
Confidence 887665 4554 6667887666 344543333344678999 777766655 3444 666677766553333222222
Q ss_pred eEEEEcCCCcEEEEEc--CCe--EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 183 ASIAFHAEGELLAVAS--GHK--LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 183 ~sVafSpdG~~LasgS--dd~--V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
..-.|+|||++|+..+ ++. |.+.|+..... ............-.|.++|+.++....
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~----~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK----IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCc----EEEccccccCCCCCcCCCCceEEEecc
Confidence 2678999999998877 343 66666665553 223444444556788999997776654
No 304
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=97.14 E-value=0.0076 Score=68.67 Aligned_cols=137 Identities=9% Similarity=0.177 Sum_probs=99.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC---CeEEEEEC
Q 036953 93 PPPRSTIAAAFSPDGRTLASTH--GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD---HEVRLWDA 167 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS--~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D---gtVrLWDl 167 (792)
...++|...+|+|.++.|++.+ .+-.+.++|+... ....+. ...=..+.|+| ..++++.++-| |.+-+||.
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccC-cccEEEEecCCccccceEEecc
Confidence 5578999999999888887665 5778899998765 444443 22334578999 88999998866 56999998
Q ss_pred CCCcEEE-EeccCCCeeEEEEcCCCcEEEEEc-------CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 168 NTSECIG-SCDFYRPIASIAFHAEGELLAVAS-------GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 168 ~tg~~v~-t~~h~s~V~sVafSpdG~~LasgS-------dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
...-.+. .+. .....-+.|+||++++.+.. |..|.|||+.....- ..+.+.|.|.+++..
T Consensus 348 ~~rf~~~~~~~-~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-----------el~~~~W~p~~~~~t 415 (561)
T COG5354 348 AGRFKVAGAFN-GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-----------ELTNITWDPSGQYVT 415 (561)
T ss_pred CCceEEEEEee-cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-----------hhhhccccCCcccce
Confidence 7754443 332 23345578999999988764 345999999666521 467889999999777
Q ss_pred EEEeeC
Q 036953 240 LTAEVN 245 (792)
Q Consensus 240 aS~s~~ 245 (792)
+++..+
T Consensus 416 tsSs~~ 421 (561)
T COG5354 416 TSSSCP 421 (561)
T ss_pred eeccCC
Confidence 776655
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.14 E-value=0.001 Score=70.26 Aligned_cols=141 Identities=18% Similarity=0.152 Sum_probs=89.6
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCCCCCCeE-----EEEEcCCCCEEEEEEC-----CCeEEEEECCCCcEEEEecCCCC
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVPPPRSTI-----AAAFSPDGRTLASTHG-----DHTVKIIDCQTGNCLKVLSGHRR 138 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~-----sLafSPDG~~LaSGS~-----DGtVrIWDl~tgk~v~~L~gH~~ 138 (792)
+..+..+..|+.+.+.+.+.-.-..|..++. +.+....++.+.++.. -+..++|+++..+.+..-.....
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~ 180 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD 180 (319)
T ss_pred CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence 4556777778887777765421111222111 2222234555554432 23456677654432222122233
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--ccCCCeeEEEEcCC-CcEEEEEc-CCeEEEEECCC
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC--DFYRPIASIAFHAE-GELLAVAS-GHKLYIWPYNN 209 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~--~h~s~V~sVafSpd-G~~LasgS-dd~V~IWDlrt 209 (792)
.|.+++-+|...+++++|+.||.+-+||.++......+ .|+.+++.+-|||. +..|++++ ++.+..||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 49999999977788888999999999999987443333 48999999999986 46788888 45599999865
No 306
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.13 E-value=0.0017 Score=75.22 Aligned_cols=75 Identities=27% Similarity=0.412 Sum_probs=64.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
..+..|.+++++|+..+|+.|+.||.|.+||...+.. .+....-.++.++||| ++.+++.|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--LLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--eeeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 5677899999999999999999999999999876633 2334556688999999 9999999999999999998643
No 307
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.12 E-value=0.092 Score=56.54 Aligned_cols=140 Identities=18% Similarity=0.217 Sum_probs=86.0
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC--cEEEEec---CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 101 AAFSPDGRTLASTHGDHTVKIIDCQTG--NCLKVLS---GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 101 LafSPDG~~LaSGS~DGtVrIWDl~tg--k~v~~L~---gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
++.+.||+.||.- .|..|.|-..+.. .++.+.+ .....=+.++|+| |+.+||.+...|+|+++|+.... +..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEE
Confidence 4566788877764 4556666655432 1222222 2223346799999 99999999999999999997533 223
Q ss_pred e--------ccCCCeeEEEEcCCC-------cEEEEEcCCeEEEEECCCC--CcccCCe--EEe-cCCCCeEEEEEccCC
Q 036953 176 C--------DFYRPIASIAFHAEG-------ELLAVASGHKLYIWPYNNK--EEASSPI--IVL-KTRRSLRAVHFHPHA 235 (792)
Q Consensus 176 ~--------~h~s~V~sVafSpdG-------~~LasgSdd~V~IWDlrt~--~~~~~~~--~~~-~h~~sVtsVafSPdG 235 (792)
+ .....|..+.|-.-. ++|+....+.++-|-+..+ +.-.+.. .+. .....|+++.|+|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 2 234567777775432 4666666766666665322 1111111 111 246689999999998
Q ss_pred CeEEEEEe
Q 036953 236 APFVLTAE 243 (792)
Q Consensus 236 ~~LlaS~s 243 (792)
+.|++++.
T Consensus 160 ~LLlVgG~ 167 (282)
T PF15492_consen 160 RLLLVGGC 167 (282)
T ss_pred CEEEEecc
Confidence 87766655
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.10 E-value=0.024 Score=70.27 Aligned_cols=171 Identities=12% Similarity=0.181 Sum_probs=106.9
Q ss_pred CCcEEEEEeCCCeEEEEeccCCCc---CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECC----C--------------
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCPL---VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQ----T-------------- 126 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~L---~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~----t-------------- 126 (792)
.+..++.....+.|.+.|..+..+ ..-..+|.+++||||++.++..+.++++.+-+-. .
T Consensus 79 d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~ 158 (1265)
T KOG1920|consen 79 DTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKF 158 (1265)
T ss_pred ccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcccccccccccccc
Confidence 344566666777777777776543 2346789999999999999999988888765421 0
Q ss_pred -----CcEEEEecCCCC---------------------CcEEEEEccCCCCEEEEE-----eCCCeEEEEECCCCcEEEE
Q 036953 127 -----GNCLKVLSGHRR---------------------TPWVVRFHPLRSEILASG-----SLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 127 -----gk~v~~L~gH~~---------------------~VtsVafSP~dg~lLaSg-----S~DgtVrLWDl~tg~~v~t 175 (792)
|+....|.|..+ .=+.|.|-- |+++++.. ...+.|++||-+ +..-..
T Consensus 159 v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~ 236 (1265)
T KOG1920|consen 159 VNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNST 236 (1265)
T ss_pred ceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcc
Confidence 111122322111 112488987 88898873 223789999987 332211
Q ss_pred e-ccCCCeeEEEEcCCCcEEEEEc----CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 176 C-DFYRPIASIAFHAEGELLAVAS----GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 176 ~-~h~s~V~sVafSpdG~~LasgS----dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
- ....--.+++|-|.|.++++-. ++.|.+|.-+..+..............|..++|+-++..|++
T Consensus 237 se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 237 SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAV 306 (1265)
T ss_pred cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceee
Confidence 1 1223345789999999998864 445888886554432211111122334899999999996655
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.06 E-value=0.051 Score=64.77 Aligned_cols=131 Identities=11% Similarity=0.106 Sum_probs=95.2
Q ss_pred CCeEEEEeccCC----CcCCCCCCeEEEEEcCC------C------CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcE
Q 036953 78 AESLRHLSAKYC----PLVPPPRSTIAAAFSPD------G------RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141 (792)
Q Consensus 78 d~sIrvWd~~t~----~L~gH~~~V~sLafSPD------G------~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vt 141 (792)
...+.+.|..+- .+.-|+..|+.+.|.|. + -.||++.-.|.|.+||...+..+..++.|..+|.
T Consensus 34 hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~q 113 (1062)
T KOG1912|consen 34 HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQ 113 (1062)
T ss_pred CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchh
Confidence 334444444332 34568889999999872 1 1567777789999999999988888999999999
Q ss_pred EEEEcc--CCC-CEEEEEeCCCeEEEEECCCCcEEEEeccCC-CeeEEEEcCCC-cE-EEEEcCCeEEEEECC
Q 036953 142 VVRFHP--LRS-EILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHAEG-EL-LAVASGHKLYIWPYN 208 (792)
Q Consensus 142 sVafSP--~dg-~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s-~V~sVafSpdG-~~-LasgSdd~V~IWDlr 208 (792)
.++|-+ ++. +.|+.-....++.+|+..+|+..+.+.... ...++.++|-. +. .+.++.+.|.+-+.-
T Consensus 114 dl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 114 DLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred heeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 999977 334 566777778899999999999998886544 45568888844 44 444556666666553
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.04 E-value=0.2 Score=55.08 Aligned_cols=158 Identities=17% Similarity=0.203 Sum_probs=100.7
Q ss_pred CCeEEEEeccC-----CCcCCCCCCeEEEEEcCCCCEEEEEEC------------------CCeEEEEECCCCcEEEE--
Q 036953 78 AESLRHLSAKY-----CPLVPPPRSTIAAAFSPDGRTLASTHG------------------DHTVKIIDCQTGNCLKV-- 132 (792)
Q Consensus 78 d~sIrvWd~~t-----~~L~gH~~~V~sLafSPDG~~LaSGS~------------------DGtVrIWDl~tgk~v~~-- 132 (792)
.+.|-+||... +.+..|.-.-..+.+.|||+.|+++.. +-.+.+.|..+|+.+.+
T Consensus 76 ~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~ 155 (305)
T PF07433_consen 76 RGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVE 155 (305)
T ss_pred cEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeee
Confidence 34566676651 134455556678889999988888732 22445556677876655
Q ss_pred e--cCCCCCcEEEEEccCCCCEEEEEeCCCe-------EEEEECCCCcEEEEe--------ccCCCeeEEEEcCCCcEEE
Q 036953 133 L--SGHRRTPWVVRFHPLRSEILASGSLDHE-------VRLWDANTSECIGSC--------DFYRPIASIAFHAEGELLA 195 (792)
Q Consensus 133 L--~gH~~~VtsVafSP~dg~lLaSgS~Dgt-------VrLWDl~tg~~v~t~--------~h~s~V~sVafSpdG~~La 195 (792)
+ .-|+..|..+++.+ ++..++-.-..+. |-+++. ++.+..+ .....+-+|++++++.+++
T Consensus 156 Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia 232 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIA 232 (305)
T ss_pred cCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEE
Confidence 4 34888999999998 7666655543332 223332 2323222 2457899999999999998
Q ss_pred EEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 196 VAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 196 sgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+++ .+.+.+||..+++... ...-..+..|+-.+++ ++++++..
T Consensus 233 ~tsPrGg~~~~~d~~tg~~~~-----~~~l~D~cGva~~~~~--f~~ssG~G 277 (305)
T PF07433_consen 233 VTSPRGGRVAVWDAATGRLLG-----SVPLPDACGVAPTDDG--FLVSSGQG 277 (305)
T ss_pred EECCCCCEEEEEECCCCCEee-----ccccCceeeeeecCCc--eEEeCCCc
Confidence 888 5569999999987543 1122345667766666 44444433
No 311
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.96 E-value=0.18 Score=54.41 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=93.7
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC-------CCCCcEEEEEccCC-----CCEEEEEeCCCeEEEE
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG-------HRRTPWVVRFHPLR-----SEILASGSLDHEVRLW 165 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g-------H~~~VtsVafSP~d-----g~lLaSgS~DgtVrLW 165 (792)
-..++||||+..||.+...|+|++||+.. ..+..+.. -...|.++.|-+.. ...|+.-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 56899999999999999999999999875 33444432 23467777775411 2246666778877776
Q ss_pred ECCC-----CcEEEEec----cCCCeeEEEEcCCCcEEEEEc----CC--------eEEEEECCCCCc-----------c
Q 036953 166 DANT-----SECIGSCD----FYRPIASIAFHAEGELLAVAS----GH--------KLYIWPYNNKEE-----------A 213 (792)
Q Consensus 166 Dl~t-----g~~v~t~~----h~s~V~sVafSpdG~~LasgS----dd--------~V~IWDlrt~~~-----------~ 213 (792)
-+.. .+....|. ....|.++.|+|..++|++|+ ++ +|.-|.+-.... .
T Consensus 125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~ 204 (282)
T PF15492_consen 125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI 204 (282)
T ss_pred EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence 6532 23333332 467899999999999888886 11 366675533210 0
Q ss_pred c----------CC-eEE----ecCCCCeEEEEEccCCCeEEEEEe
Q 036953 214 S----------SP-IIV----LKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 214 ~----------~~-~~~----~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
. .. ... ....+.|..+..+|||..|++..-
T Consensus 205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~ 249 (282)
T PF15492_consen 205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHF 249 (282)
T ss_pred cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEc
Confidence 0 00 000 113577899999999997766544
No 312
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.87 E-value=0.017 Score=64.36 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=84.4
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCCCCC--CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCC-CCcEEEEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVPPPR--STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHR-RTPWVVRF 145 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~gH~~--~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~-~~VtsVaf 145 (792)
+..++....++.+..++..++++.-... ...... .++.+++.++.||.+..+|..+++.+....... ........
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i 318 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV 318 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE
Confidence 3466777778888888887664321111 111111 256788888999999999999999887764222 22222233
Q ss_pred ccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCC-Cee-EEEEcCCCcEEEEEcCCeEEEE
Q 036953 146 HPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIA-SIAFHAEGELLAVASGHKLYIW 205 (792)
Q Consensus 146 SP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s-~V~-sVafSpdG~~LasgSdd~V~IW 205 (792)
.+..++.++.||.|.++|..+++.+..+.... .+. +..+ .++++++.+.+++|+.|
T Consensus 319 ---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~-~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 319 ---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVV-VGDGLLVQTRDGDLYAF 376 (377)
T ss_pred ---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEE-ECCEEEEEeCCceEEEe
Confidence 34688889999999999999999998886333 332 2222 34555555556667765
No 313
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.75 E-value=0.013 Score=67.13 Aligned_cols=143 Identities=19% Similarity=0.296 Sum_probs=92.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEE---CC-CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEE-EEeCCCe--EEEEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTH---GD-HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILA-SGSLDHE--VRLWD 166 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS---~D-GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLa-SgS~Dgt--VrLWD 166 (792)
-...+..-+|+|+++.++.-+ .. ..+.++|+++++....+. ..+.-...+|+| |++.|+ +...|+. |.+.|
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~~d 268 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP-DGSKLAFSSSRDGSPDIYLMD 268 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC-CCCEEEEEECCCCCccEEEEc
Confidence 345577889999999876553 22 358999999887554443 223334478999 555555 5556665 56668
Q ss_pred CCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC--Ce--EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 167 ANTSECIGSCDFYRPIASIAFHAEGELLAVASG--HK--LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 167 l~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd--d~--V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+..++..+.....+.-..-.|+|||++++..++ +. |+++|........ ......... .-.|+|||++++...
T Consensus 269 l~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r---iT~~~~~~~-~p~~SpdG~~i~~~~ 344 (425)
T COG0823 269 LDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR---LTFSGGGNS-NPVWSPDGDKIVFES 344 (425)
T ss_pred CCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE---eeccCCCCc-CccCCCCCCEEEEEe
Confidence 877764332223333346789999999988874 33 8888887776422 122222222 778999999888777
No 314
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.70 E-value=0.0044 Score=42.47 Aligned_cols=39 Identities=44% Similarity=0.680 Sum_probs=34.3
Q ss_pred CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 127 GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 127 gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
++++..+..|...|.++.|++ +..++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355677778999999999999 778999999999999996
No 315
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.69 E-value=0.0068 Score=77.21 Aligned_cols=154 Identities=14% Similarity=0.201 Sum_probs=116.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE 171 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~ 171 (792)
-+-..|.++.=+|...+.++|+.||.|++|.-..++.+..+. +-...|+.+.|+. .|+.+..+..||.+.+|.+. .+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc-cCCceeeeccCCceeecccC-Cc
Confidence 345678888888888899999999999999998888777765 2237899999998 88888888999999999997 34
Q ss_pred EEEEe-ccCCCeeEEEEcCCCcEEEEEc---CCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc
Q 036953 172 CIGSC-DFYRPIASIAFHAEGELLAVAS---GHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 172 ~v~t~-~h~s~V~sVafSpdG~~LasgS---dd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
+.... .|.....++.|-. ..+++++ +++ +.+||........ .....|...++++++-|.-+.+++++...+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s--~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS--LVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc--eeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence 44444 4777777777755 5666665 444 9999986655433 233668999999999999997777766555
Q ss_pred cccCCC
Q 036953 247 LDSSDS 252 (792)
Q Consensus 247 Lrs~d~ 252 (792)
+..+|.
T Consensus 2360 v~l~D~ 2365 (2439)
T KOG1064|consen 2360 VCLFDI 2365 (2439)
T ss_pred EEEeeh
Confidence 544443
No 316
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.57 E-value=0.046 Score=60.86 Aligned_cols=137 Identities=15% Similarity=0.042 Sum_probs=85.2
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCC---CCCCe-EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEE-E
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVP---PPRST-IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWV-V 143 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~g---H~~~V-~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vts-V 143 (792)
+..++....++.+..+|..+++..- -...+ ..... ++..++.++.|+.+..+|..+|+.++...... .+.+ .
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCC
Confidence 3455666666667666665553221 01111 11222 57788889999999999999999888765322 2221 1
Q ss_pred EEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCee------EEEEcCCCcEEEEEc-CCeEEEEECCCCCcc
Q 036953 144 RFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIA------SIAFHAEGELLAVAS-GHKLYIWPYNNKEEA 213 (792)
Q Consensus 144 afSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~------sVafSpdG~~LasgS-dd~V~IWDlrt~~~~ 213 (792)
.. .++.++.++.|+.+..||.++++.++.+....... +.... ++ .++.+. ++.+..+|.++++..
T Consensus 142 ~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~~~~~g~v~ald~~tG~~~ 213 (377)
T TIGR03300 142 LV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLVGFAGGKLVALDLQTGQPL 213 (377)
T ss_pred EE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEEECCCCEEEEEEccCCCEe
Confidence 22 23466777889999999999999988875433221 11111 33 455555 567999999888643
No 317
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.57 E-value=0.00052 Score=79.58 Aligned_cols=149 Identities=18% Similarity=0.236 Sum_probs=105.4
Q ss_pred cCCCCCCeEEEEEcC-CCCEEEEEE----CCCeEEEEECCCC----cEEEEecC-CCCCcEEEEEccCCCCEEEEEeCCC
Q 036953 91 LVPPPRSTIAAAFSP-DGRTLASTH----GDHTVKIIDCQTG----NCLKVLSG-HRRTPWVVRFHPLRSEILASGSLDH 160 (792)
Q Consensus 91 L~gH~~~V~sLafSP-DG~~LaSGS----~DGtVrIWDl~tg----k~v~~L~g-H~~~VtsVafSP~dg~lLaSgS~Dg 160 (792)
..+|....++++|++ |.+.||.|- .|..+.|||+.++ +....|.+ ......+++|-. +.+++.+|...+
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr 176 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSR 176 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccc
Confidence 456788899999999 788888884 3677999999876 22333433 344566899986 889999999999
Q ss_pred eEEEEECCCCcEEEEeccCCCeeEEEEcC-CCcEEEEEcCCeEEEEE-CCCCCcccCCeEEecC-----CCCeEEEEEcc
Q 036953 161 EVRLWDANTSECIGSCDFYRPIASIAFHA-EGELLAVASGHKLYIWP-YNNKEEASSPIIVLKT-----RRSLRAVHFHP 233 (792)
Q Consensus 161 tVrLWDl~tg~~v~t~~h~s~V~sVafSp-dG~~LasgSdd~V~IWD-lrt~~~~~~~~~~~~h-----~~sVtsVafSP 233 (792)
.++++|++........-....+..+..+| .+.+++...++.|-+|| .++-+. +.....+ ...+..++|.|
T Consensus 177 ~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnien---pl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIEN---PLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccccCceeeccchhhhcc---HHHHHhhCCCCcccceeeEEecc
Confidence 99999998543222222344567778888 78899988888899999 443332 1111111 23489999999
Q ss_pred CCCeEEEEEe
Q 036953 234 HAAPFVLTAE 243 (792)
Q Consensus 234 dG~~LlaS~s 243 (792)
...-++++..
T Consensus 254 trtglla~l~ 263 (783)
T KOG1008|consen 254 TRTGLLAVLS 263 (783)
T ss_pred CCcchhhhhc
Confidence 8776666554
No 318
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.56 E-value=0.11 Score=53.27 Aligned_cols=139 Identities=19% Similarity=0.088 Sum_probs=87.5
Q ss_pred CCcEEEEEeCCCeEEEEeccCCCcCCC--------CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCC
Q 036953 68 AKRGLVSWVEAESLRHLSAKYCPLVPP--------PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRT 139 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~~L~gH--------~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~ 139 (792)
.+..++....++.+..+|..++++.-. ......+....++..++.+..++.|..+|+.+|+.+..+......
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 344555556677888888766632111 011222233334888999998999999999999999888764422
Q ss_pred c-----------EEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEE
Q 036953 140 P-----------WVVRFHPLRSEILASGSLDHE-VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWP 206 (792)
Q Consensus 140 V-----------tsVafSP~dg~lLaSgS~Dgt-VrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWD 206 (792)
. ..+.+. ++ .++.++.++. +.+ |+.+++.++... ...+..+ ...++..|++++ ++.|.+||
T Consensus 155 ~~~~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVIS--DG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS--EEEETTEEEEEECC--TT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCcceeeecccccceEEE--CC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1 222222 34 6666777775 555 999999776444 3333332 345666666666 77799999
Q ss_pred CCCCCc
Q 036953 207 YNNKEE 212 (792)
Q Consensus 207 lrt~~~ 212 (792)
+++++.
T Consensus 229 ~~tG~~ 234 (238)
T PF13360_consen 229 LKTGKV 234 (238)
T ss_dssp TTTTEE
T ss_pred CCCCCE
Confidence 999874
No 319
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.52 E-value=0.62 Score=51.90 Aligned_cols=144 Identities=13% Similarity=0.088 Sum_probs=77.6
Q ss_pred CCCcEEEEEccCCCC-EEEEE-eCCC---eEEEEECCCCcEEEEe--ccCCCe---eEEEEc-CCCcEEEEEc--CCe--
Q 036953 137 RRTPWVVRFHPLRSE-ILASG-SLDH---EVRLWDANTSECIGSC--DFYRPI---ASIAFH-AEGELLAVAS--GHK-- 201 (792)
Q Consensus 137 ~~~VtsVafSP~dg~-lLaSg-S~Dg---tVrLWDl~tg~~v~t~--~h~s~V---~sVafS-pdG~~LasgS--dd~-- 201 (792)
...+..+.|.+ +++ +++.- ..+. .+.++|..++.+...+ .....| ....|. +++..++..+ ++-
T Consensus 183 ~~yl~~v~W~~-d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 183 DYYLTRVGWSP-DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SEEEEEEEEEE-TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred ccCcccceecC-CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 34577889988 666 33332 3332 3667788776554443 223332 356654 6666555444 332
Q ss_pred EEEEECCCCCcccCCeEEecCCCCeEE-EEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecC-CC
Q 036953 202 LYIWPYNNKEEASSPIIVLKTRRSLRA-VHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQS-GD 279 (792)
Q Consensus 202 V~IWDlrt~~~~~~~~~~~~h~~sVts-VafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ss-G~ 279 (792)
|++++...+.. ..+..+.-.|+. +.|+++++.+..++...+ |...+...+.-+ +.
T Consensus 262 ly~~~~~~~~~----~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~-------------------p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 262 LYLYDLDGGKP----RQLTSGDWEVTSILGWDEDNNRIYFTANGDN-------------------PGERHLYRVSLDSGG 318 (353)
T ss_dssp EEEEETTSSEE----EESS-SSS-EEEEEEEECTSSEEEEEESSGG-------------------TTSBEEEEEETTETT
T ss_pred EEEEcccccce----eccccCceeecccceEcCCCCEEEEEecCCC-------------------CCceEEEEEEeCCCC
Confidence 88888877652 234445666744 788999998887775321 112222222222 33
Q ss_pred EEEEeeccCcccCCCceEEEeEECCCCcEEE
Q 036953 280 HVSLAAELPLMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 280 ~~~l~s~l~~l~gh~~~VwdV~~SpDGr~lv 310 (792)
.....+.. ...| ..+.|||||++++
T Consensus 319 ~~~~LT~~--~~~~----~~~~~Spdg~y~v 343 (353)
T PF00930_consen 319 EPKCLTCE--DGDH----YSASFSPDGKYYV 343 (353)
T ss_dssp EEEESSTT--SSTT----EEEEE-TTSSEEE
T ss_pred CeEeccCC--CCCc----eEEEECCCCCEEE
Confidence 33333311 1112 7899999999998
No 320
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=96.52 E-value=0.014 Score=70.39 Aligned_cols=142 Identities=18% Similarity=0.168 Sum_probs=108.6
Q ss_pred CceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcCCCCEEEEEEC---------CCeEEEEECCCCc
Q 036953 62 DSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSPDGRTLASTHG---------DHTVKIIDCQTGN 128 (792)
Q Consensus 62 a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSPDG~~LaSGS~---------DGtVrIWDl~tgk 128 (792)
....+..+..++.+...|++.+-|.+.. ++..|.+.|.++.. .|+.|++++. |..|+|||++.-+
T Consensus 180 v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 180 VTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred eEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhh
Confidence 4445566677888888899999888765 56789999988776 5999999975 6678999998877
Q ss_pred EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcE---EEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeE
Q 036953 129 CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-SEC---IGSC-DFYRPIASIAFHAEGELLAVAS-GHKL 202 (792)
Q Consensus 129 ~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~---v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V 202 (792)
.+.-+.-+.++ .-+.|+|.-...++.++..|...+-|..+ +.+ +..+ ...+.+..++++++|+.++.+. ++.|
T Consensus 258 al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v 336 (1118)
T KOG1275|consen 258 ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHV 336 (1118)
T ss_pred ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcE
Confidence 66555555554 55889997778899999999999998332 222 1222 3456699999999999999998 5569
Q ss_pred EEEE
Q 036953 203 YIWP 206 (792)
Q Consensus 203 ~IWD 206 (792)
.+|-
T Consensus 337 ~~wa 340 (1118)
T KOG1275|consen 337 NLWA 340 (1118)
T ss_pred eeec
Confidence 9997
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=0.31 Score=59.05 Aligned_cols=140 Identities=13% Similarity=0.211 Sum_probs=93.9
Q ss_pred EEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCC-cEEEEEccCCCCEEEEEeCCCe-----EEEEECCCC-----
Q 036953 102 AFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRT-PWVVRFHPLRSEILASGSLDHE-----VRLWDANTS----- 170 (792)
Q Consensus 102 afSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~-VtsVafSP~dg~lLaSgS~Dgt-----VrLWDl~tg----- 170 (792)
+|++.+..++.|+.||.|.+.+ +.-+.++.|+.+... |..+-... +..+|++.+.|++ +++||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 3667888999999999887776 334455778877776 44444333 5578999888765 899998742
Q ss_pred -cEE---EEec-----cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccC-CeEEecCCCCeEEEEEccCCCe--
Q 036953 171 -ECI---GSCD-----FYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASS-PIIVLKTRRSLRAVHFHPHAAP-- 237 (792)
Q Consensus 171 -~~v---~t~~-----h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~-~~~~~~h~~sVtsVafSPdG~~-- 237 (792)
+++ ..+. ...++.+++.|.+-+.+|+|-.++ |..+.-+-.+.... .........+|+.+.|..+++.
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 344 2222 245788999999989999998554 77764322211110 1223446789999999999987
Q ss_pred EEEEEe
Q 036953 238 FVLTAE 243 (792)
Q Consensus 238 LlaS~s 243 (792)
+++|..
T Consensus 188 Fv~Tt~ 193 (933)
T KOG2114|consen 188 FVATTE 193 (933)
T ss_pred EEEecc
Confidence 444444
No 322
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.013 Score=68.40 Aligned_cols=93 Identities=16% Similarity=0.152 Sum_probs=81.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcE-EEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW-VVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vt-sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
.-.+.-+.|+|.-..||.+..+|.|.+..++ .+.++++.-|...++ +++|.| |+++|+.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 4458889999999999999999999999988 778899987887777 999999 8999999999999999999999888
Q ss_pred EE--eccCCCeeEEEEcC
Q 036953 174 GS--CDFYRPIASIAFHA 189 (792)
Q Consensus 174 ~t--~~h~s~V~sVafSp 189 (792)
.. +.....|.++-|++
T Consensus 98 ~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eccccccccchheeeccc
Confidence 77 45667788888863
No 323
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.45 E-value=0.098 Score=64.05 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=91.9
Q ss_pred CCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCC-cEEEEEcc----CCCCEEEEEeCCCeEEEEECCCCc--EEE---
Q 036953 106 DGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRT-PWVVRFHP----LRSEILASGSLDHEVRLWDANTSE--CIG--- 174 (792)
Q Consensus 106 DG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~-VtsVafSP----~dg~lLaSgS~DgtVrLWDl~tg~--~v~--- 174 (792)
+.+.|+.- .....|+-.|+..|+.+.....|... |..++-.. ....-.+.|-.++.+..||.|-.. ++.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444433 34577999999999999998877654 55443321 123445677788899999998642 332
Q ss_pred -EeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 175 -SCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 175 -t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
.+.....+.|++-+.+|. ||+|+ +|.|++||- .++.. ...+.+-.++|..|+.+.||+++++||..+
T Consensus 572 k~Y~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~-~g~~A--KT~lp~lG~pI~~iDvt~DGkwilaTc~ty 640 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDGY-IAVGSNKGDIRLYDR-LGKRA--KTALPGLGDPIIGIDVTADGKWILATCKTY 640 (794)
T ss_pred cccccCCCceEEEecCCce-EEEEeCCCcEEeecc-cchhh--hhcCCCCCCCeeEEEecCCCcEEEEeecce
Confidence 123455678888777775 55555 666999994 33322 233445579999999999999999999833
No 324
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.44 E-value=0.029 Score=57.49 Aligned_cols=105 Identities=19% Similarity=0.112 Sum_probs=72.8
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccC----C
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFY----R 180 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~----s 180 (792)
++.++++++.++.+..||..+|+.+..+.. .+.+...-.. .+..++.++.|+.+..+|..+|+.++.. ... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 577888889999999999999999988875 3222221122 3456666778889999999999999884 322 1
Q ss_pred CeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcc
Q 036953 181 PIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEA 213 (792)
Q Consensus 181 ~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~ 213 (792)
.........++..++++. ++.|..+|.++++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEE
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEE
Confidence 112222333366666666 677999999998854
No 325
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.013 Score=66.00 Aligned_cols=145 Identities=11% Similarity=0.056 Sum_probs=100.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC--C-cEEEEecCCCCCcEEEEEccCCCCEEEEEeC-CCeEEEEECCC
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT--G-NCLKVLSGHRRTPWVVRFHPLRSEILASGSL-DHEVRLWDANT 169 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t--g-k~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-DgtVrLWDl~t 169 (792)
|.+.|+-+... -.+++.+++.||.++.|--.. + +.+.-+..|-+.|.+++.+. ++.++.|.+. |+.+|++|+.+
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEEeec
Confidence 66667666544 467899999999999997543 1 33455667888899999998 8899999777 99999999988
Q ss_pred CcEEEEec---cCCCeeEEEEcCCC--cEEEEEc--CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 170 SECIGSCD---FYRPIASIAFHAEG--ELLAVAS--GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 170 g~~v~t~~---h~s~V~sVafSpdG--~~LasgS--dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
-..+..+. ..+.+. +..++.. ..|+++. ++.+.++|-....+.. .....-|..+|..+.++|.++.+++..
T Consensus 86 ~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~-~~fkklH~sPV~~i~y~qa~Ds~vSiD 163 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD-GYFKKLHFSPVKKIRYNQAGDSAVSID 163 (558)
T ss_pred cchhhhcccccCCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcCcc-ceecccccCceEEEEeeccccceeecc
Confidence 65554433 222222 2223322 2455555 3459999986655332 234445889999999999999766554
No 326
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.35 E-value=0.11 Score=62.13 Aligned_cols=191 Identities=15% Similarity=0.086 Sum_probs=126.4
Q ss_pred CCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCC----CcCCCCCCeEEEEEcC---CC-CEE
Q 036953 39 PKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYC----PLVPPPRSTIAAAFSP---DG-RTL 110 (792)
Q Consensus 39 ~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~----~L~gH~~~V~sLafSP---DG-~~L 110 (792)
.+...++++.|.|..--.+ ..+-......|.+..-.|.|.+||...+ .+..|.+++..++|-+ +. ..|
T Consensus 53 ~h~s~V~~VrWap~~~p~~----llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRD----LLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL 128 (1062)
T ss_pred cCccceeEEEeccCCCchh----ccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence 4456899999998853211 1111123446677777888999998765 5678889999999987 33 356
Q ss_pred EEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC----cEEEEe----ccCC--
Q 036953 111 ASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS----ECIGSC----DFYR-- 180 (792)
Q Consensus 111 aSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg----~~v~t~----~h~s-- 180 (792)
+.-+...++.+|+..+|+..++.........|+.+.|.|.+.+..-+..|.|.+-+.-.. .+.+.+ +|.+
T Consensus 129 laIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~ 208 (1062)
T KOG1912|consen 129 LAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA 208 (1062)
T ss_pred EEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh
Confidence 666777899999999999999888666788889999988888888888888877765321 111111 1111
Q ss_pred -----------------------CeeEEEEcCCCc-EEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 181 -----------------------PIASIAFHAEGE-LLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 181 -----------------------~V~sVafSpdG~-~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
....++|+|.-+ .++..--..+.|+|++-..... ...-....+.-+.|-|+++
T Consensus 209 ~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~---vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 209 HLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLA---VVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred hhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeE---EEEeccCCcceeEeccCCC
Confidence 112457788764 4444555669999997766443 1111233344566666654
No 327
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.99 E-value=0.44 Score=53.03 Aligned_cols=92 Identities=17% Similarity=0.185 Sum_probs=62.2
Q ss_pred cCCCCEEEEEE---------CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 104 SPDGRTLASTH---------GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 104 SPDG~~LaSGS---------~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
|||+++++... ..+.+.|||+.+++...... ....+....|+| +++.++-.. ++.|.++++.+++..+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~-~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTP-PPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS--EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcC-Cccccccceeec-CCCeeEEEe-cCceEEEECCCCCeEE
Confidence 57787777642 24678999999876544333 367888999999 888888875 6789999988775443
Q ss_pred Eec-c-----------------CCCeeEEEEcCCCcEEEEEc
Q 036953 175 SCD-F-----------------YRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 175 t~~-h-----------------~s~V~sVafSpdG~~LasgS 198 (792)
.-. . -+.-..+-|+||+++|+...
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 221 1 12235688999999888764
No 328
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=1.5 Score=49.62 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCEEEEE-ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEE-e--CCCeEEEEECCCCcEE
Q 036953 98 TIAAAFSPDGRTLAST-HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASG-S--LDHEVRLWDANTSECI 173 (792)
Q Consensus 98 V~sLafSPDG~~LaSG-S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSg-S--~DgtVrLWDl~tg~~v 173 (792)
-..++++++++.++.. ..++.|.+.|..+.+......- ......+++++ +++.+..+ . .++++.+.|..+.+.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 4577888888855544 4468999999887776666542 22667899999 55444444 4 3789999999999888
Q ss_pred EEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCccc-CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 174 GSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEEAS-SPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 174 ~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~~~-~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.+......-..++++|+|+.++++. ++.|.+.|........ .......-...-..+.++|+|.++.+...
T Consensus 154 ~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 154 ATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEec
Confidence 8864333238999999999877776 5669999976654331 01111222233457889999997776664
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.76 E-value=0.068 Score=63.31 Aligned_cols=137 Identities=14% Similarity=0.180 Sum_probs=96.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec--CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS--GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE 171 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~--gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~ 171 (792)
|...|.--+++..+++++.|+.-|.+++|+-..++. ..++ +-.+.+..+..++ +..++|.|+..+.|.++.++.+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccC
Confidence 344455556677899999999999999999766653 3333 3455666777888 88889999999999999887743
Q ss_pred EEEE-----e--ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCC-CcccCCeEEecCCCCeEEEEEc
Q 036953 172 CIGS-----C--DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNK-EEASSPIIVLKTRRSLRAVHFH 232 (792)
Q Consensus 172 ~v~t-----~--~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~-~~~~~~~~~~~h~~sVtsVafS 232 (792)
+-.. . .|+..|++++|++++..|++|. .|+|..-.+... ........+..-...|-.++..
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 2211 1 2577899999999999999998 455777666652 1111122344556778777765
No 330
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.74 E-value=0.26 Score=58.80 Aligned_cols=108 Identities=10% Similarity=0.042 Sum_probs=75.5
Q ss_pred EcCCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe------------------------
Q 036953 103 FSPDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS------------------------ 157 (792)
Q Consensus 103 fSPDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS------------------------ 157 (792)
+++||+.+...+ ..+.+.+.|..+.+...++.- .+....+.+++ +++++++.+
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn 277 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN 277 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence 345776654332 356778888887776666542 22345677777 666666554
Q ss_pred ----------------CCCeEEEEECCC-----CcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCCCCc
Q 036953 158 ----------------LDHEVRLWDANT-----SECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNNKEE 212 (792)
Q Consensus 158 ----------------~DgtVrLWDl~t-----g~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt~~~ 212 (792)
.+++|.+.|.++ .+.+..+........+.++|||+++++++ ++.|.|+|+.+.+.
T Consensus 278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence 235588888887 45666667777788999999999999988 56699999988653
No 331
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.70 E-value=0.19 Score=58.19 Aligned_cols=135 Identities=19% Similarity=0.261 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD 177 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~ 177 (792)
-....|.. .+.+|+-....+|+|+.--..+....++- ...+..+-. |.+|...+.+ .|.+||..+++.+..+.
T Consensus 71 g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~ 143 (443)
T PF04053_consen 71 GLSFVWSS-RNRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRID 143 (443)
T ss_dssp -SEEEE-T-SSEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEES
T ss_pred eeEEEEec-CccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEe
Confidence 45678888 45577777788899974222222223331 122333332 5666666544 89999999999999998
Q ss_pred cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCC------Ccc-cCCeEEec-CCCCeEEEEEccCCCeEEEEE
Q 036953 178 FYRPIASIAFHAEGELLAVASGHKLYIWPYNNK------EEA-SSPIIVLK-TRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 178 h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~------~~~-~~~~~~~~-h~~sVtsVafSPdG~~LlaS~ 242 (792)
... |..+.|+++|++++..+++.++|++.+.. +.. ........ -...|.+.+|.-+ .++.+.
T Consensus 144 v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT 213 (443)
T PF04053_consen 144 VSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT 213 (443)
T ss_dssp S-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-
T ss_pred cCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc
Confidence 665 89999999999999999888888887554 100 00122222 2678889999855 555554
No 332
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.67 E-value=3 Score=44.74 Aligned_cols=149 Identities=11% Similarity=0.122 Sum_probs=83.5
Q ss_pred cCCCCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCCCcEEEEecCC-CCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 91 LVPPPRSTIAAAFSPDGR-TLASTHGDHTVKIIDCQTGNCLKVLSGH-RRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~-~LaSGS~DGtVrIWDl~tgk~v~~L~gH-~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
+.+-.+.+..++|+|+.+ .+++....+.|..++. .|+.++.+.-. .+..-+|++.. ++.++++--.++.+.++++.
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE-
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEe
Confidence 445566799999999755 5566667788888886 47777776532 34578889876 66666666568999999884
Q ss_pred CC--c----EEEEe--c----cCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCC--CC-cccCCeEE------ecCCCCe
Q 036953 169 TS--E----CIGSC--D----FYRPIASIAFHAEGELLAVASGHK-LYIWPYNN--KE-EASSPIIV------LKTRRSL 226 (792)
Q Consensus 169 tg--~----~v~t~--~----h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt--~~-~~~~~~~~------~~h~~sV 226 (792)
.. . ....+ . .+..+..++|++.++.|+++-... ..||.++. .. ... .... ......+
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLF-VSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--E-EEE-HHHH-HT--SS--
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcccee-eccccccccccceeccc
Confidence 31 1 11222 1 345689999999987777776433 55555543 11 110 0000 0123457
Q ss_pred EEEEEccCCCeEEEEE
Q 036953 227 RAVHFHPHAAPFVLTA 242 (792)
Q Consensus 227 tsVafSPdG~~LlaS~ 242 (792)
.++.++|....+++-+
T Consensus 174 S~l~~~p~t~~lliLS 189 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILS 189 (248)
T ss_dssp -EEEEETTTTEEEEEE
T ss_pred cceEEcCCCCeEEEEE
Confidence 8999999877666554
No 333
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.65 E-value=0.57 Score=44.24 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=67.0
Q ss_pred eEEEEEcC-CC---CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 98 TIAAAFSP-DG---RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 98 V~sLafSP-DG---~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
|++|++.. |+ +.|++|+.|..|++|+- .+.+..+. ....|+.++-.. ...++.+-.+|+|-+|+- .+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeC--ccee
Confidence 66777665 33 58999999999999984 35667776 345677777665 478999999999999975 3445
Q ss_pred EEeccCCCeeEEEEcC---CC-cEEEEEc-CCeE
Q 036953 174 GSCDFYRPIASIAFHA---EG-ELLAVAS-GHKL 202 (792)
Q Consensus 174 ~t~~h~s~V~sVafSp---dG-~~LasgS-dd~V 202 (792)
+..+.+..+.++.+.. || .-|++|- +++|
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 5555556666666543 33 2455554 5544
No 334
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.56 E-value=0.02 Score=39.06 Aligned_cols=31 Identities=42% Similarity=0.598 Sum_probs=28.5
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIID 123 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWD 123 (792)
.|...|.++.|++++..+++++.|+.+++||
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 5677899999999999999999999999996
No 335
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.51 E-value=0.27 Score=58.95 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=83.6
Q ss_pred CCeEEEEEcCCCCEEEEEE------CCCe--EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC--------
Q 036953 96 RSTIAAAFSPDGRTLASTH------GDHT--VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD-------- 159 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS------~DGt--VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D-------- 159 (792)
..+...+++|||+.++... .|.. +.+++. .+.....+.+. ..+.-.|+| +++.+.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678999999999887765 2443 444454 23333333333 378899999 77777666432
Q ss_pred ----CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEE---EECCCCC-cccCCeEEec-CCCCeEEEE
Q 036953 160 ----HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYI---WPYNNKE-EASSPIIVLK-TRRSLRAVH 230 (792)
Q Consensus 160 ----gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~I---WDlrt~~-~~~~~~~~~~-h~~sVtsVa 230 (792)
+.+.+.++..++... .....|..+.|+|||+.++...+++|++ -....++ ....+..... -...+.++.
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 223333443333322 3356799999999999988877777777 4433333 1111222222 234468899
Q ss_pred EccCCCeEEEE
Q 036953 231 FHPHAAPFVLT 241 (792)
Q Consensus 231 fSPdG~~LlaS 241 (792)
|..++. |++.
T Consensus 504 W~~~~~-L~V~ 513 (591)
T PRK13616 504 WRTGDS-LVVG 513 (591)
T ss_pred EecCCE-EEEE
Confidence 999888 4443
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.47 E-value=0.83 Score=55.60 Aligned_cols=173 Identities=15% Similarity=0.144 Sum_probs=110.0
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCC---cCCCCCC-eEEEEEcCCCCEEEEEECCC-----eEEEEECCCC------cEE-
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCP---LVPPPRS-TIAAAFSPDGRTLASTHGDH-----TVKIIDCQTG------NCL- 130 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~---L~gH~~~-V~sLafSPDG~~LaSGS~DG-----tVrIWDl~tg------k~v- 130 (792)
.++..++.+..++.|-..+..... +..+... |..+....+.+.|++-+.|+ .++|||++.- .++
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CCCceEEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 456666777777777666654332 3445555 33333333446777777664 4899998632 233
Q ss_pred -EEecC-----CCCCcEEEEEccCCCCEEEEEeCCCeEEEEE--C-CCC--cEEEEeccCCCeeEEEEcCCCcE-EEEEc
Q 036953 131 -KVLSG-----HRRTPWVVRFHPLRSEILASGSLDHEVRLWD--A-NTS--ECIGSCDFYRPIASIAFHAEGEL-LAVAS 198 (792)
Q Consensus 131 -~~L~g-----H~~~VtsVafSP~dg~lLaSgS~DgtVrLWD--l-~tg--~~v~t~~h~s~V~sVafSpdG~~-LasgS 198 (792)
..+.. ...++.+++.+. +-+.++.|-.||.|.++. + +.. +.........+|+.+.+..+++. ++++.
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T 191 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT 191 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe
Confidence 12222 245688899998 788899999999999884 2 121 12222246789999999988876 44455
Q ss_pred CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 199 GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 199 dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
...|.+|.+.... +. ......+..+++|..|++....+++++
T Consensus 192 t~~V~~y~l~gr~-p~-~~~ld~~G~~lnCss~~~~t~qfIca~ 233 (933)
T KOG2114|consen 192 TEQVMLYSLSGRT-PS-LKVLDNNGISLNCSSFSDGTYQFICAG 233 (933)
T ss_pred cceeEEEEecCCC-cc-eeeeccCCccceeeecCCCCccEEEec
Confidence 5569999997443 22 233556788899999988665354444
No 337
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.27 E-value=0.57 Score=58.73 Aligned_cols=166 Identities=12% Similarity=0.150 Sum_probs=102.6
Q ss_pred EEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCC
Q 036953 71 GLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRS 150 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg 150 (792)
..+....-+.+++|-.....- .-.+.|.++.|.-+.+.++.+..+|.|.+-|..+.... ....-.+.|.+++|+| |+
T Consensus 45 ~~~ei~~~~kv~~~~~s~~~~-~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~-De 121 (1265)
T KOG1920|consen 45 KIFEIESVGKVRLVAESFLPE-DGDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSP-DE 121 (1265)
T ss_pred cceeeeccccccceeecccCc-CCCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecC-CC
Confidence 333333333355554332211 22367999999999999999999999999988766422 2223457899999999 99
Q ss_pred CEEEEEeCCCeEEEEEC----CCCcEE-------------------EEec----------------------cCCCeeEE
Q 036953 151 EILASGSLDHEVRLWDA----NTSECI-------------------GSCD----------------------FYRPIASI 185 (792)
Q Consensus 151 ~lLaSgS~DgtVrLWDl----~tg~~v-------------------~t~~----------------------h~s~V~sV 185 (792)
++++..+.+.++.+-+- -..+++ ..|. ..+.=.+|
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~I 201 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSI 201 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceE
Confidence 99999888888765322 111111 0110 11122359
Q ss_pred EEcCCCcEEEEEc-----C-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 186 AFHAEGELLAVAS-----G-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 186 afSpdG~~LasgS-----d-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.|--||+++++.. + .+|++||-. +.... .......-=.+++|-|.|..+++...
T Consensus 202 sWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns---~se~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 202 SWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS---TSEPVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred EEccCCcEEEEEEEeccCCceeEEEeccc-chhhc---ccCcccccccceeecCCCCeEeeeee
Confidence 9999999999953 3 349999976 32111 01111222347889998886655433
No 338
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.09 E-value=0.56 Score=50.33 Aligned_cols=130 Identities=15% Similarity=0.056 Sum_probs=82.9
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCC---CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEE-EE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVP---PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWV-VR 144 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~g---H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vts-Va 144 (792)
+..++-++-.+.+.-.|.+++.+.- ....+.+-+.- -|++++.|...|.+++.+.++|+..+.|.... .|.+ ..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceE
Confidence 4445555555555555555543321 12233332222 47789999999999999999998888876432 3332 23
Q ss_pred EccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCC-CeeEEEEcC-CCcEEEEEcCCe
Q 036953 145 FHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR-PIASIAFHA-EGELLAVASGHK 201 (792)
Q Consensus 145 fSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s-~V~sVafSp-dG~~LasgSdd~ 201 (792)
..+ ++.++..++.|++.+..|.++..++...+-.+ -..+-+..+ ++.+.++...+.
T Consensus 101 ~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~ 158 (354)
T KOG4649|consen 101 CDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGA 158 (354)
T ss_pred EcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccce
Confidence 344 78999999999999999999999998875333 233444555 455444444444
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.07 E-value=0.43 Score=56.94 Aligned_cols=92 Identities=13% Similarity=0.222 Sum_probs=64.6
Q ss_pred CCeEEEEECCC-----CcEEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcE------------EEEec
Q 036953 116 DHTVKIIDCQT-----GNCLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRLWDANTSEC------------IGSCD 177 (792)
Q Consensus 116 DGtVrIWDl~t-----gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrLWDl~tg~~------------v~t~~ 177 (792)
++.|.+.|..+ .+.+..+. -.....+++++| |+++++.++ .+.+|.+.|+.+.+. +....
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 35688888777 33444443 455678899999 777766554 689999999987542 33344
Q ss_pred cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCC
Q 036953 178 FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNN 209 (792)
Q Consensus 178 h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt 209 (792)
........+|+++|+...+-. +..|-.||+.+
T Consensus 373 vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 444455778999998666655 66699999876
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=95.05 E-value=1.4 Score=54.44 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=68.8
Q ss_pred cEEEEEeCCCeEEEEeccCCC--cC-------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCc
Q 036953 70 RGLVSWVEAESLRHLSAKYCP--LV-------PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP 140 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~--L~-------gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V 140 (792)
...+.+..++.|..||.+... +. .......|++-+.+| +||+|+.+|.||+||-...+....|.+-..+|
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI 621 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPI 621 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCe
Confidence 356677778888888887431 11 123346777777666 79999999999999954333445567888999
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
.+|..+. ||++++..+ +..+.|++.
T Consensus 622 ~~iDvt~-DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 622 IGIDVTA-DGKWILATC-KTYLLLIDT 646 (794)
T ss_pred eEEEecC-CCcEEEEee-cceEEEEEE
Confidence 9999999 888877654 567777775
No 341
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.085 Score=61.86 Aligned_cols=92 Identities=12% Similarity=0.188 Sum_probs=73.3
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCee-EEEEcCCCcEEEEEc-CCeEEEEECCCCCccc
Q 036953 138 RTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIA-SIAFHAEGELLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 138 ~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~-sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
-.|.-+.|+| .-+++|++..+|.|-+.-++ -+.++++. ++-.++ +++|.|||+.|++|- |++|++-|..++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3567799999 88999999999999998887 66777776 555666 999999999999998 6669999999887543
Q ss_pred CCeEEecCCCCeEEEEEcc
Q 036953 215 SPIIVLKTRRSLRAVHFHP 233 (792)
Q Consensus 215 ~~~~~~~h~~sVtsVafSP 233 (792)
. ....-...|.++-|.+
T Consensus 99 ~--~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 S--FLFSVETDISKGIWDR 115 (665)
T ss_pred c--cccccccchheeeccc
Confidence 1 1233456788888874
No 342
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.03 E-value=1.9 Score=48.80 Aligned_cols=170 Identities=15% Similarity=0.194 Sum_probs=113.1
Q ss_pred CcEEEEE-eCCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecCCCCCcE
Q 036953 69 KRGLVSW-VEAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPW 141 (792)
Q Consensus 69 ~~~L~S~-s~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~Vt 141 (792)
+.+++.. ...+.+.+.+..+.+.. .-......++++++++.+..+.. ++++.+.|..+++.+.....-..+ .
T Consensus 85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~ 163 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-T 163 (381)
T ss_pred CCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-c
Confidence 3333333 34577888885544221 11225678999999988887765 689999999988877775433233 8
Q ss_pred EEEEccCCCCEEE-EEeCCCeEEEEECCCCcEEE-----EeccCCCeeEEEEcCCCcEEEEEcC----CeEEEEECCCCC
Q 036953 142 VVRFHPLRSEILA-SGSLDHEVRLWDANTSECIG-----SCDFYRPIASIAFHAEGELLAVASG----HKLYIWPYNNKE 211 (792)
Q Consensus 142 sVafSP~dg~lLa-SgS~DgtVrLWDl~tg~~v~-----t~~h~s~V~sVafSpdG~~LasgSd----d~V~IWDlrt~~ 211 (792)
.+++.| +++.++ +-..+++|.+.|........ ..........+.++++|+++.+..+ +.+...|..+..
T Consensus 164 ~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~ 242 (381)
T COG3391 164 GVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN 242 (381)
T ss_pred eEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce
Confidence 899999 777544 44578999999987765553 1333445578899999997777652 358888888776
Q ss_pred cccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 212 EASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 212 ~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
...... ..... .-..+.++|+|+.+.+.-
T Consensus 243 v~~~~~-~~~~~-~~~~v~~~p~g~~~yv~~ 271 (381)
T COG3391 243 VTATDL-PVGSG-APRGVAVDPAGKAAYVAN 271 (381)
T ss_pred EEEecc-ccccC-CCCceeECCCCCEEEEEe
Confidence 432101 11112 455688999999777664
No 343
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.96 E-value=0.52 Score=53.13 Aligned_cols=132 Identities=15% Similarity=0.066 Sum_probs=80.3
Q ss_pred cEEEEEeCCCeEEEEeccCCCcCCC--CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCC-CCcEEEEEc
Q 036953 70 RGLVSWVEAESLRHLSAKYCPLVPP--PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHR-RTPWVVRFH 146 (792)
Q Consensus 70 ~~L~S~s~d~sIrvWd~~t~~L~gH--~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~-~~VtsVafS 146 (792)
..++....++.+..+|..+++..-. ......+.. ++..++.++.|+.+..+|..+++.+.....-. .......+.
T Consensus 257 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~ 334 (394)
T PRK11138 257 GVVYALAYNGNLVALDLRSGQIVWKREYGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY 334 (394)
T ss_pred CEEEEEEcCCeEEEEECCCCCEEEeecCCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE
Confidence 4555666677777777766532211 011111222 56788888899999999999998877654211 122223332
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEecc-CCCee-EEEEcCCCcEEEEEcCCeEEEEEC
Q 036953 147 PLRSEILASGSLDHEVRLWDANTSECIGSCDF-YRPIA-SIAFHAEGELLAVASGHKLYIWPY 207 (792)
Q Consensus 147 P~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h-~s~V~-sVafSpdG~~LasgSdd~V~IWDl 207 (792)
+..++.++.||.+.+.|..+|+.+..... ...+. ...+ .++++++...++.|+.++.
T Consensus 335 ---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 ---NGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ---CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence 35778889999999999999998887753 22222 2222 2444444444666877764
No 344
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.96 E-value=4.8 Score=45.77 Aligned_cols=174 Identities=16% Similarity=0.105 Sum_probs=87.6
Q ss_pred cCCcEEEEEeCCC--eEEEEeccCC---CcCCCC-CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCc
Q 036953 67 DAKRGLVSWVEAE--SLRHLSAKYC---PLVPPP-RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP 140 (792)
Q Consensus 67 d~~~~L~S~s~d~--sIrvWd~~t~---~L~gH~-~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V 140 (792)
+++..|+....++ .+...|+.++ +|.... +......++++.+.++.......|+-.|+.+.+....+......+
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~ 125 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWK 125 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccc
Confidence 3444455444343 3444455554 333332 223356677888888766666788889999998777777666666
Q ss_pred EEEEEcc-CCCCEEEEEeC---C-------------------CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCc-EEEE
Q 036953 141 WVVRFHP-LRSEILASGSL---D-------------------HEVRLWDANTSECIGSCDFYRPIASIAFHAEGE-LLAV 196 (792)
Q Consensus 141 tsVafSP-~dg~lLaSgS~---D-------------------gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~-~Las 196 (792)
-...|.. .+...++-.-. | ..|.--|+.+|+....+.....+.-+.|+|... +|+.
T Consensus 126 g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~f 205 (386)
T PF14583_consen 126 GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMF 205 (386)
T ss_dssp EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEE
T ss_pred cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEE
Confidence 5566643 25555543321 1 235556888888887888888999999999775 4444
Q ss_pred EcCC---e--EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 197 ASGH---K--LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 197 gSdd---~--V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
|-.+ . -+||-+++-.....+.........+.-=-|.|||..|..
T Consensus 206 CHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 206 CHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp EE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred eccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 4322 2 266766443221101111111233444456666665554
No 345
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.87 E-value=3 Score=45.69 Aligned_cols=151 Identities=11% Similarity=0.189 Sum_probs=98.6
Q ss_pred cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCC-CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC
Q 036953 91 LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH-RRTPWVVRFHPLRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 91 L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH-~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t 169 (792)
+.+-...+.++.|+|+.+.|++..+...-.||=...|+.+.++.-. -...-.+.|-. +++++++--.++++.++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcC
Confidence 4555666999999999999988888877778877788888877521 12234577776 777777777888888887765
Q ss_pred CcEE-------EEe---cc-CCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEec-------CCCCeEEEE
Q 036953 170 SECI-------GSC---DF-YRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLK-------TRRSLRAVH 230 (792)
Q Consensus 170 g~~v-------~t~---~h-~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~-------h~~sVtsVa 230 (792)
...+ ..+ .+ +.....++|+|..+.|.++-... +.||.+......-....... .-..|.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 4221 111 22 56788999999999988887554 55555543331110111111 123577889
Q ss_pred EccCCCeEEEEE
Q 036953 231 FHPHAAPFVLTA 242 (792)
Q Consensus 231 fSPdG~~LlaS~ 242 (792)
|++....+++-+
T Consensus 240 ~~~~~~~LLVLS 251 (316)
T COG3204 240 FNAITNSLLVLS 251 (316)
T ss_pred ecCCCCcEEEEe
Confidence 988665555433
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.82 E-value=0.89 Score=48.15 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=82.2
Q ss_pred CCCEEEEEECCCeEEEEECC-CCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE----------
Q 036953 106 DGRTLASTHGDHTVKIIDCQ-TGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG---------- 174 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~-tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~---------- 174 (792)
.++.|+.|..+| +.+++.. ..+...... ...|..+..-+ +-+.++.-+ |+++.++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 578999999998 8999983 333333332 33499999998 666666654 6999999987643332
Q ss_pred -----EeccCCCeeEEE---EcCCCcEEEEEcCCeEEEEECCCCCccc-CCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 175 -----SCDFYRPIASIA---FHAEGELLAVASGHKLYIWPYNNKEEAS-SPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 175 -----t~~h~s~V~sVa---fSpdG~~LasgSdd~V~IWDlrt~~~~~-~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.+.....+..++ -......|+++...+|.+|......... .......-.+.+..++|. ++.++++..
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeC
Confidence 222233444444 2234467777777788888876642211 122334456889999998 454555543
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.81 E-value=1.8 Score=48.92 Aligned_cols=110 Identities=18% Similarity=0.215 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCEEEEE-ECCC----eEEEEECCCCcEEEE-ecCCCCCcEEEEEccCCCCEEEEEeCC-----------C
Q 036953 98 TIAAAFSPDGRTLAST-HGDH----TVKIIDCQTGNCLKV-LSGHRRTPWVVRFHPLRSEILASGSLD-----------H 160 (792)
Q Consensus 98 V~sLafSPDG~~LaSG-S~DG----tVrIWDl~tgk~v~~-L~gH~~~VtsVafSP~dg~lLaSgS~D-----------g 160 (792)
+....+|||+++++.+ +..| .++++|+.+++.+.. +..- ....+.|.+ +++.|+....| .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 4468899999999866 3333 599999999976543 2221 223499999 76666555433 2
Q ss_pred eEEEEECCCCcE--EEEec--cCCC-eeEEEEcCCCcEEEEEc---CC--eEEEEECCCC
Q 036953 161 EVRLWDANTSEC--IGSCD--FYRP-IASIAFHAEGELLAVAS---GH--KLYIWPYNNK 210 (792)
Q Consensus 161 tVrLWDl~tg~~--v~t~~--h~s~-V~sVafSpdG~~LasgS---dd--~V~IWDlrt~ 210 (792)
.|+.|++.+... ...+. .... ...+..++|+++|+..+ .. .+++.|+...
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 488888887632 23343 2333 67889999999887654 22 3899999875
No 348
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.72 E-value=1.2 Score=51.67 Aligned_cols=169 Identities=16% Similarity=0.164 Sum_probs=88.4
Q ss_pred cCCCceeecCCcEEEEEeCCCeEEEE-eccCCC--cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecC
Q 036953 59 GPSDSSVRDAKRGLVSWVEAESLRHL-SAKYCP--LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSG 135 (792)
Q Consensus 59 G~~a~sv~d~~~~L~S~s~d~sIrvW-d~~t~~--L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~g 135 (792)
|....++|..+...+......+|+++ +.+... ....+..+..+-. |..|...+.+ .|.+||..+++.++.+..
T Consensus 69 G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 69 GSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV 144 (443)
T ss_dssp EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS
T ss_pred CceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec
Confidence 33344555556666666667778885 332221 1111222333322 8878777665 899999999999999973
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC-----------cEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEE
Q 036953 136 HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS-----------ECIGSC-DFYRPIASIAFHAEGELLAVASGHKLY 203 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-----------~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~ 203 (792)
. .|..+.|++ ++++++..+.+ ++.+++.+.. .....+ .....|.+..|.-+ -++.+... +|+
T Consensus 145 ~--~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lk 218 (443)
T PF04053_consen 145 S--AVKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLK 218 (443)
T ss_dssp ---E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEE
T ss_pred C--CCcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEE
Confidence 3 389999999 88999888765 6777765433 123333 33778999999877 55555554 666
Q ss_pred EEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 204 IWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 204 IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
- +-.++.. ....-..+++=+...+..+.+.+...
T Consensus 219 Y--l~~Ge~~----~i~~ld~~~yllgy~~~~~~ly~~Dr 252 (443)
T PF04053_consen 219 Y--LVNGETG----IIAHLDKPLYLLGYLPKENRLYLIDR 252 (443)
T ss_dssp E--EETTEEE----EEEE-SS--EEEEEETTTTEEEEE-T
T ss_pred E--EEcCCcc----eEEEcCCceEEEEEEccCCEEEEEEC
Confidence 6 3344321 12223456666777776665555443
No 349
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.56 E-value=0.36 Score=57.41 Aligned_cols=137 Identities=12% Similarity=0.019 Sum_probs=89.4
Q ss_pred EEEEEeCCCeEEEEeccCCCc-----CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE---EE--Ee-cCCCCC
Q 036953 71 GLVSWVEAESLRHLSAKYCPL-----VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC---LK--VL-SGHRRT 139 (792)
Q Consensus 71 ~L~S~s~d~sIrvWd~~t~~L-----~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~---v~--~L-~gH~~~ 139 (792)
.+.-+..-+.+.+++-..+.+ .+-...+..+..|++..++|.|+..|.|.++-++.+.. +. .+ +.|+..
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~r 126 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCR 126 (726)
T ss_pred eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCce
Confidence 344445556666666555422 12334466677888888999999999999998875432 11 11 137889
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCC-----cEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCC
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANTS-----ECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNK 210 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg-----~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~ 210 (792)
|++++|++ ++..+++|...|+|.+-.+... .....+...+.|-.+++. ++.+|++.. -+-.+++...+
T Consensus 127 VTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl-~r~~Lc~tE~e 199 (726)
T KOG3621|consen 127 VTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL-TRCILCQTEAE 199 (726)
T ss_pred EEEEEecc-cccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh-hhhheeecchh
Confidence 99999999 9999999999999998887762 122223466778777764 333333333 23455555444
No 350
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.48 E-value=4.2 Score=43.05 Aligned_cols=141 Identities=13% Similarity=0.106 Sum_probs=91.9
Q ss_pred cCCcEEEEEeCCCeEEEEecc-CC--CcCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE------------
Q 036953 67 DAKRGLVSWVEAESLRHLSAK-YC--PLVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK------------ 131 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~-t~--~L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~------------ 131 (792)
.++..++.+.++| +.+++.. .. ....+...|..+...++-+.|++-+ |+.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 3566777777777 6677662 11 1122334499999999877777655 5999999987543222
Q ss_pred ---EecCCCCCcEEEE-EccCCCCEEEEEeCCCeEEEEECCCC-----cEEEEeccCCCeeEEEEcCCCcEEEEEcCCeE
Q 036953 132 ---VLSGHRRTPWVVR-FHPLRSEILASGSLDHEVRLWDANTS-----ECIGSCDFYRPIASIAFHAEGELLAVASGHKL 202 (792)
Q Consensus 132 ---~L~gH~~~VtsVa-fSP~dg~lLaSgS~DgtVrLWDl~tg-----~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V 202 (792)
.+ .....+...+ -....+...+.+...++|.+|..... +..+.+.....+..++|. ++.|+.+..+..
T Consensus 83 ~~~~~-~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f 159 (275)
T PF00780_consen 83 LPTKL-PETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGF 159 (275)
T ss_pred ccccc-cccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCce
Confidence 11 1223344444 11224444555556668888877652 466677788899999998 778888877779
Q ss_pred EEEECCCCCc
Q 036953 203 YIWPYNNKEE 212 (792)
Q Consensus 203 ~IWDlrt~~~ 212 (792)
.+.|+.++..
T Consensus 160 ~~idl~~~~~ 169 (275)
T PF00780_consen 160 YLIDLNTGSP 169 (275)
T ss_pred EEEecCCCCc
Confidence 9999986653
No 351
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.34 E-value=0.093 Score=63.10 Aligned_cols=133 Identities=17% Similarity=0.227 Sum_probs=89.2
Q ss_pred EEEEcCCCCEEEEEEC----CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 100 AAAFSPDGRTLASTHG----DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 100 sLafSPDG~~LaSGS~----DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
-..|+|...+|++++. .|.|.||- ++|++-.... ..-.++++|||| ..-.|+.|-.-|.+.+|...+.+.-..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccCh-HHHHHhhccccceeEEEecCCceeeee
Confidence 3468888888877764 47788874 5565432221 112356799999 777788888899999999887654333
Q ss_pred -eccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEEecC--CCC--eEEEEEccCCC
Q 036953 176 -CDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIVLKT--RRS--LRAVHFHPHAA 236 (792)
Q Consensus 176 -~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h--~~s--VtsVafSPdG~ 236 (792)
..|..+|..+.|+++|..|+++..-+ |.+|.+....... -.....| .+. ..+..+++++.
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q-~~~~~~hel~~~ltl~cfRL~~~~E 162 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQ-TSNIMQHELNDQLTLWCFRLSYDRE 162 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccc-cchhhhhHhhceeeEEEEecCCChH
Confidence 35899999999999999999998544 9999886444332 1112222 233 34555566643
No 352
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.31 E-value=0.99 Score=50.85 Aligned_cols=142 Identities=10% Similarity=-0.009 Sum_probs=86.6
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCc-----E
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTP-----W 141 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~V-----t 141 (792)
+..++.+..++.+..+|.+++++.-....-..+.-+| .+..++.+..++.+.-+|..+|+.++.+......+ .
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~ 199 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGES 199 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCC
Confidence 4566777778889899988775432211100111122 35567778889999999999999998886432111 1
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCC--------eeEEEEcC---CCcEEEEEcCCeEEEEECCCC
Q 036953 142 VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRP--------IASIAFHA---EGELLAVASGHKLYIWPYNNK 210 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~--------V~sVafSp---dG~~LasgSdd~V~IWDlrt~ 210 (792)
..... +..++.++.++.+..+|..+++.++.+....+ ...+.-+| ++..++.+.++.++.+|..++
T Consensus 200 sP~v~---~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG 276 (394)
T PRK11138 200 APATA---FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG 276 (394)
T ss_pred CCEEE---CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence 11111 23566677899999999999988776532111 11111122 444444445677999999888
Q ss_pred Ccc
Q 036953 211 EEA 213 (792)
Q Consensus 211 ~~~ 213 (792)
+..
T Consensus 277 ~~~ 279 (394)
T PRK11138 277 QIV 279 (394)
T ss_pred CEE
Confidence 743
No 353
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.14 E-value=2.5 Score=49.94 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=87.5
Q ss_pred cCCCCCCeEEEEEcCC----C-CEEEEEECCCeEEEEECC-----CCcEEEEecCCC-C----CcEEEEEccCCCCEEEE
Q 036953 91 LVPPPRSTIAAAFSPD----G-RTLASTHGDHTVKIIDCQ-----TGNCLKVLSGHR-R----TPWVVRFHPLRSEILAS 155 (792)
Q Consensus 91 L~gH~~~V~sLafSPD----G-~~LaSGS~DGtVrIWDl~-----tgk~v~~L~gH~-~----~VtsVafSP~dg~lLaS 155 (792)
..|.-.-|..+.|.|- - .+||+ .-.+.|.||.+. .++.+..-..+- . -..++.||| ...+|+.
T Consensus 52 viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~V 129 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTV 129 (671)
T ss_pred EeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccC-CCceEEE
Confidence 3455566999999993 3 34555 445679999875 223222211111 1 124688999 6667666
Q ss_pred EeCCCeEEEEECCC--CcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe--EEEEECCCCCcccCC-eEEecCCCCeEEEE
Q 036953 156 GSLDHEVRLWDANT--SECIGSCDFYRPIASIAFHAEGELLAVASGHK--LYIWPYNNKEEASSP-IIVLKTRRSLRAVH 230 (792)
Q Consensus 156 gS~DgtVrLWDl~t--g~~v~t~~h~s~V~sVafSpdG~~LasgSdd~--V~IWDlrt~~~~~~~-~~~~~h~~sVtsVa 230 (792)
-.....=.+++++. .+....+...+.|.|.+|.+||+.|+++-+.. -+|||-......... ...+.-.+.|.++.
T Consensus 130 LT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~ 209 (671)
T PF15390_consen 130 LTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIE 209 (671)
T ss_pred EecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEE
Confidence 55554445566654 33444457788999999999999888877555 689986544322111 12233345566665
Q ss_pred EccCCCeEEEEE
Q 036953 231 FHPHAAPFVLTA 242 (792)
Q Consensus 231 fSPdG~~LlaS~ 242 (792)
-.-|.. ++++.
T Consensus 210 AT~dsq-VAvaT 220 (671)
T PF15390_consen 210 ATVDSQ-VAVAT 220 (671)
T ss_pred Eeccce-EEEEe
Confidence 444433 44433
No 354
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=94.13 E-value=9.9 Score=40.86 Aligned_cols=193 Identities=12% Similarity=0.157 Sum_probs=98.6
Q ss_pred ceeeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCC-eEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEE
Q 036953 34 HREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAE-SLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLAS 112 (792)
Q Consensus 34 ~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~-sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaS 112 (792)
.+.+....+.+..++|+|+...+ +++.+....++....++ .++.+... + .+....+++..++.++++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tL------faV~d~~~~i~els~~G~vlr~i~l~-----g-~~D~EgI~y~g~~~~vl~ 81 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTL------FAVQDEPGEIYELSLDGKVLRRIPLD-----G-FGDYEGITYLGNGRYVLS 81 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEE------EEEETTTTEEEEEETT--EEEEEE-S-----S--SSEEEEEE-STTEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeE------EEEECCCCEEEEEcCCCCEEEEEeCC-----C-CCCceeEEEECCCEEEEE
Confidence 44555555678999999986543 23346677777777654 44444432 2 345788899877766666
Q ss_pred EECCCeEEEEECCCCc------EEEEec-----CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC---CcEEEEe--
Q 036953 113 THGDHTVKIIDCQTGN------CLKVLS-----GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT---SECIGSC-- 176 (792)
Q Consensus 113 GS~DGtVrIWDl~tgk------~v~~L~-----gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t---g~~v~t~-- 176 (792)
--.++.+.++++.... ....+. .++..+-+++|.+ ..+.|+.+-...-.++|.++. ...+...
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~ 160 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD 160 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence 5568999999884321 112222 3556789999999 555666666665566665543 2222111
Q ss_pred ---c----cCCCeeEEEEcCCCc-EEEEEc-CCeEEEEECCCCCcccCCeEEecC-------CCCeEEEEEccCCCeEEE
Q 036953 177 ---D----FYRPIASIAFHAEGE-LLAVAS-GHKLYIWPYNNKEEASSPIIVLKT-------RRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 177 ---~----h~s~V~sVafSpdG~-~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h-------~~sVtsVafSPdG~~Lla 240 (792)
. .-..+.+++++|... +++.+. +..|.++|. .++... ...+... -..--.|+|.++|+ |.+
T Consensus 161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~-~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYI 237 (248)
T PF06977_consen 161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVS-SLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYI 237 (248)
T ss_dssp HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEE-EEE-STTGGG-SS---SEEEEEE-TT---EEE
T ss_pred cccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEE-EEEeCCcccCcccccCCccEEEECCCCC-EEE
Confidence 1 234578999998764 444444 344888884 444222 1111110 12456899999997 444
Q ss_pred EE
Q 036953 241 TA 242 (792)
Q Consensus 241 S~ 242 (792)
++
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 44
No 355
>PRK13616 lipoprotein LpqB; Provisional
Probab=93.96 E-value=1.4 Score=52.91 Aligned_cols=102 Identities=3% Similarity=-0.050 Sum_probs=60.6
Q ss_pred CCCCcEEEEEccCCCCEEEEEe------CCCe--EEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCC-e-EEEE
Q 036953 136 HRRTPWVVRFHPLRSEILASGS------LDHE--VRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGH-K-LYIW 205 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaSgS------~Dgt--VrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd-~-V~IW 205 (792)
....+...+++| +++.++... .|+. |.+++.. +.. ..+........-.|+|+|+.|++..++ . +++.
T Consensus 348 ~~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcceEEEe
Confidence 334678899999 777766654 2444 4444542 222 233223347889999999888777643 2 3333
Q ss_pred ECCCCCccc-------CCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 206 PYNNKEEAS-------SPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 206 Dlrt~~~~~-------~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+........ .... .....|..+.|+|||.++++..
T Consensus 425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE
Confidence 322111110 0000 2245799999999999998766
No 356
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=0.34 Score=55.06 Aligned_cols=137 Identities=11% Similarity=0.052 Sum_probs=102.2
Q ss_pred eCCCeEEEEeccCC--C----cCCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC------CcEE---------EEec
Q 036953 76 VEAESLRHLSAKYC--P----LVPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQT------GNCL---------KVLS 134 (792)
Q Consensus 76 s~d~sIrvWd~~t~--~----L~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~t------gk~v---------~~L~ 134 (792)
.+++.+.++|.... + -.-|..+|.++.+++.+..+++....|.|.-|.... .+.. ..+.
T Consensus 119 ~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~ 198 (558)
T KOG0882|consen 119 FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP 198 (558)
T ss_pred ccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccc
Confidence 35566777776432 1 235889999999999999999999999999999762 1111 1223
Q ss_pred CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecc---------------------------------C-C
Q 036953 135 GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF---------------------------------Y-R 180 (792)
Q Consensus 135 gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h---------------------------------~-s 180 (792)
..+...+++.|+| ++..+.+-+.|..|++++.++++.++.++. . .
T Consensus 199 K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~ 277 (558)
T KOG0882|consen 199 KAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST 277 (558)
T ss_pred ccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc
Confidence 3456788999999 999999999999999999999876554410 0 1
Q ss_pred CeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcc
Q 036953 181 PIASIAFHAEGELLAVASGHKLYIWPYNNKEEA 213 (792)
Q Consensus 181 ~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~ 213 (792)
.-..+.|...|++|+-++--+|++.++.+....
T Consensus 278 ~~~~~~fdes~~flly~t~~gikvin~~tn~v~ 310 (558)
T KOG0882|consen 278 VGTNAVFDESGNFLLYGTILGIKVINLDTNTVV 310 (558)
T ss_pred ccceeEEcCCCCEEEeecceeEEEEEeecCeEE
Confidence 224567888899999888667999999888753
No 357
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.88 E-value=3.1 Score=44.44 Aligned_cols=154 Identities=12% Similarity=0.046 Sum_probs=84.7
Q ss_pred CcEEEEEccCCCCEEEEEe-CCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC-CeEEEEE-CCCCCcccC
Q 036953 139 TPWVVRFHPLRSEILASGS-LDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIWP-YNNKEEASS 215 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS-~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd-d~V~IWD-lrt~~~~~~ 215 (792)
.+...++++ +++.++... .++.-.||-...+...........+....|++++...++... ...+++. ...++....
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 688899999 777666555 333334443344443333334457888899999887777653 3355553 333332210
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEeeCccccCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccCcccCCCc
Q 036953 216 PIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLDSSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELPLMSSLPF 295 (792)
Q Consensus 216 ~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLrs~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~~l~gh~~ 295 (792)
..........|..+.++|||.++++.....+= ..+.+ -.+....+|.-..+.....+......
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~----~~v~v-------------a~V~r~~~g~~~~l~~~~~~~~~~~~ 166 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGG----GRVYV-------------AGVVRDGDGVPRRLTGPRRVAPPLLS 166 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCC----CeEEE-------------EEEEeCCCCCcceeccceEecccccC
Confidence 11111112289999999999999887743210 00000 11111112212233333333333456
Q ss_pred eEEEeEECCCCcEEE
Q 036953 296 LIVPSVSIDDSRIDL 310 (792)
Q Consensus 296 ~VwdV~~SpDGr~lv 310 (792)
.+.++.+.+++++++
T Consensus 167 ~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 167 DVTDVAWSDDSTLVV 181 (253)
T ss_pred cceeeeecCCCEEEE
Confidence 788999999999988
No 358
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=93.79 E-value=0.02 Score=67.02 Aligned_cols=152 Identities=15% Similarity=0.177 Sum_probs=101.6
Q ss_pred CCeEEEEEcC--CCCEEEEEECCCeEEEEECCCCcE--EEEecCCCCCcEEEEEccCCCCEEEEEe----CCCeEEEEEC
Q 036953 96 RSTIAAAFSP--DGRTLASTHGDHTVKIIDCQTGNC--LKVLSGHRRTPWVVRFHPLRSEILASGS----LDHEVRLWDA 167 (792)
Q Consensus 96 ~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~tgk~--v~~L~gH~~~VtsVafSP~dg~lLaSgS----~DgtVrLWDl 167 (792)
..+.|++++- |...++.|..+|.|.+-.+....- -....+|....++++|++.|.++|+.|- .|..++|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 4477887766 445788999999999988754321 2345678899999999997778888773 3557999999
Q ss_pred CCC--cEEEEec----cCCCeeEEEEcCCCcEEEEEcCC-eEEEEECCCCCcccCCeEEecCCCCeEEEEEcc-CCCeEE
Q 036953 168 NTS--ECIGSCD----FYRPIASIAFHAEGELLAVASGH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP-HAAPFV 239 (792)
Q Consensus 168 ~tg--~~v~t~~----h~s~V~sVafSpdG~~LasgSdd-~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP-dG~~Ll 239 (792)
.++ .+..... ......+++|..+.+++.+|... .++++|++...... ..-....+..+...| .+.++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~----~svnTk~vqG~tVdp~~~nY~- 211 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV----SSVNTKYVQGITVDPFSPNYF- 211 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhh----hhhhhhhcccceecCCCCCce-
Confidence 986 3332221 33456689999888888888855 49999998543211 111123455666777 45544
Q ss_pred EEEeeCccccCCC
Q 036953 240 LTAEVNDLDSSDS 252 (792)
Q Consensus 240 aS~s~~dLrs~d~ 252 (792)
++..+.++..||.
T Consensus 212 cs~~dg~iAiwD~ 224 (783)
T KOG1008|consen 212 CSNSDGDIAIWDT 224 (783)
T ss_pred eccccCceeeccc
Confidence 4444666666664
No 359
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.54 E-value=1.3 Score=52.18 Aligned_cols=141 Identities=12% Similarity=0.147 Sum_probs=87.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC---CCCEEEEEeCCCeEEEEE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTH---GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL---RSEILASGSLDHEVRLWD 166 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS---~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~---dg~lLaSgS~DgtVrLWD 166 (792)
.--.+|..++|. ||+.++-.. .+|.+++=| .+.+..| .-|.++.|.|- +...++..-..+-|.+|.
T Consensus 17 qAiHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 17 QAIHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred hhhccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 334578899997 787665442 234444333 2334444 46889999982 233566667788999998
Q ss_pred CCC-----CcEEEE----eccCC--CeeEEEEcCCCcEEEEEcCCeE-EEEECCCCCcccCCeEEecCCCCeEEEEEccC
Q 036953 167 ANT-----SECIGS----CDFYR--PIASIAFHAEGELLAVASGHKL-YIWPYNNKEEASSPIIVLKTRRSLRAVHFHPH 234 (792)
Q Consensus 167 l~t-----g~~v~t----~~h~s--~V~sVafSpdG~~LasgSdd~V-~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPd 234 (792)
+.- .+.+.. +...- --..+.|||....|++-....+ .+++++..... ........+-|.+.+|.+|
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr--VkaDi~~~G~IhCACWT~D 166 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSR--VKADIKTSGLIHCACWTKD 166 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCce--EEEeccCCceEEEEEecCc
Confidence 862 222221 11111 2347889999999888764444 44555443321 1233457788999999999
Q ss_pred CCeEEEEEe
Q 036953 235 AAPFVLTAE 243 (792)
Q Consensus 235 G~~LlaS~s 243 (792)
|++|+++.+
T Consensus 167 G~RLVVAvG 175 (671)
T PF15390_consen 167 GQRLVVAVG 175 (671)
T ss_pred CCEEEEEeC
Confidence 999988765
No 360
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=93.19 E-value=11 Score=41.75 Aligned_cols=145 Identities=15% Similarity=0.198 Sum_probs=90.8
Q ss_pred CCeEEEEEcCCCCEEEEEEC-----C----CeEEEEECC-CCcEEEEecCCCCCcEEEEEccCCCCEEEEE-eCCCeEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHG-----D----HTVKIIDCQ-TGNCLKVLSGHRRTPWVVRFHPLRSEILASG-SLDHEVRL 164 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~-----D----GtVrIWDl~-tgk~v~~L~gH~~~VtsVafSP~dg~lLaSg-S~DgtVrL 164 (792)
...+.+...|+|.+.++... . ..-.||-+. .+..++.+.++-..-++++|+| |++.|+.+ +..+.|.-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSP-DGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECC-CCCEEEEEeCCCCeEEE
Confidence 34667888899887765443 1 112455544 5677777777777778999999 77665555 45578888
Q ss_pred EECCC--C----cEEEE-e-ccCCCeeEEEEcCCCcEEEEEc-CC-eEEEEECCCCCcccCCeEEecCCCCeEEEEE-cc
Q 036953 165 WDANT--S----ECIGS-C-DFYRPIASIAFHAEGELLAVAS-GH-KLYIWPYNNKEEASSPIIVLKTRRSLRAVHF-HP 233 (792)
Q Consensus 165 WDl~t--g----~~v~t-~-~h~s~V~sVafSpdG~~LasgS-dd-~V~IWDlrt~~~~~~~~~~~~h~~sVtsVaf-SP 233 (792)
|++.. + +.... + ...+..-.++...+|.+.+++. ++ +|.+|+.. ++... ...-....+++++| .|
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~---~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLG---EIKLPVKRPTNPAFGGP 265 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEE---EEECCCCCCccceEeCC
Confidence 87752 1 11111 1 1345566788888898876544 33 69999988 55432 22223366777777 45
Q ss_pred CCCeEEEEEeeC
Q 036953 234 HAAPFVLTAEVN 245 (792)
Q Consensus 234 dG~~LlaS~s~~ 245 (792)
+.+.|++++...
T Consensus 266 ~~~~L~iTs~~~ 277 (307)
T COG3386 266 DLNTLYITSARS 277 (307)
T ss_pred CcCEEEEEecCC
Confidence 567777766543
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.19 E-value=8 Score=43.68 Aligned_cols=163 Identities=15% Similarity=0.070 Sum_probs=90.2
Q ss_pred CeEEEEeccCCCcCCC--CCC-eEEEEEcCCCCEEEEEECCC-----------eEEEEECCCCcE--EEEecCCCCC--c
Q 036953 79 ESLRHLSAKYCPLVPP--PRS-TIAAAFSPDGRTLASTHGDH-----------TVKIIDCQTGNC--LKVLSGHRRT--P 140 (792)
Q Consensus 79 ~sIrvWd~~t~~L~gH--~~~-V~sLafSPDG~~LaSGS~DG-----------tVrIWDl~tgk~--v~~L~gH~~~--V 140 (792)
..++++|+.++++..- ... ...+.|.+|++.|+....+. .|++|++.+... ...|...... .
T Consensus 150 ~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~ 229 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWF 229 (414)
T ss_dssp EEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSE
T ss_pred EEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEE
Confidence 3488888887754321 111 12399999999887776443 378888877643 3556554443 4
Q ss_pred EEEEEccCCCCEEEEEe-C--C-CeEEEEECCCC-----cEEEEeccCCCe-eEEEEcCCCcEEEEEcC----CeEEEEE
Q 036953 141 WVVRFHPLRSEILASGS-L--D-HEVRLWDANTS-----ECIGSCDFYRPI-ASIAFHAEGELLAVASG----HKLYIWP 206 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS-~--D-gtVrLWDl~tg-----~~v~t~~h~s~V-~sVafSpdG~~LasgSd----d~V~IWD 206 (792)
..+..++ ++++++... . + ..+.+.|+..+ +..........+ ..+... .+.+++...+ ++|...+
T Consensus 230 ~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~ 307 (414)
T PF02897_consen 230 VSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVD 307 (414)
T ss_dssp EEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEE
T ss_pred EEEEecC-cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEec
Confidence 6788888 777766543 2 2 35788888875 344444444444 344443 5555554432 3477788
Q ss_pred CCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 207 YNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 207 lrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+...........+..+...+.-..+...+++|++.-.
T Consensus 308 l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 308 LADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp TTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred ccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence 8777642212244455554444444556777776554
No 362
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.17 E-value=7.7 Score=42.07 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=73.0
Q ss_pred eEEEEEcCCCCEEEEEECCC--eEEEEECCCCcEEEEec-CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 98 TIAAAFSPDGRTLASTHGDH--TVKIIDCQTGNCLKVLS-GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DG--tVrIWDl~tgk~v~~L~-gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
...+.|..+|..+-+.+.-| .|+.+|+.+++...... ...-.--+++... +++..-.=.++...+||..+-+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEEE
Confidence 55788877888777877665 69999999998765544 2233445566653 4455555578899999999999998
Q ss_pred EeccCCCeeEEEEcCCCcEEEE-EcCCeEEEEECCCCCc
Q 036953 175 SCDFYRPIASIAFHAEGELLAV-ASGHKLYIWPYNNKEE 212 (792)
Q Consensus 175 t~~h~s~V~sVafSpdG~~Las-gSdd~V~IWDlrt~~~ 212 (792)
++.....-+.++ .|++.|+. -+.++|+.+|..+.+.
T Consensus 125 ~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 125 TFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp EEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred EEecCCcceEEE--cCCCEEEEECCccceEEECCcccce
Confidence 887766667777 34544444 4466799999876653
No 363
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.14 E-value=3.7 Score=43.89 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=87.1
Q ss_pred CeEEEEEcCCCCEEEEEE---CCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE-CCCCcE
Q 036953 97 STIAAAFSPDGRTLASTH---GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD-ANTSEC 172 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS---~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD-l~tg~~ 172 (792)
.+...++++|++.++... ....++++.. +.....+. ....+..-.|++ ++.+.+....+...+++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence 588999999999887655 2334555543 33333321 223778889999 666666666566666663 333332
Q ss_pred EE-Ee--c-cCCCeeEEEEcCCCcEEEEEc----CCeEEEEECCCCCcc-----cCCeEEe-cCCCCeEEEEEccCCCeE
Q 036953 173 IG-SC--D-FYRPIASIAFHAEGELLAVAS----GHKLYIWPYNNKEEA-----SSPIIVL-KTRRSLRAVHFHPHAAPF 238 (792)
Q Consensus 173 v~-t~--~-h~s~V~sVafSpdG~~LasgS----dd~V~IWDlrt~~~~-----~~~~~~~-~h~~sVtsVafSPdG~~L 238 (792)
.. .. . ....|..+.++|||..++.-. +++|++--+.+.... ..+.... .....++.+.|.+++..+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 21 12 1 222899999999998877765 455777766433222 1122222 235689999999999855
Q ss_pred EEEEe
Q 036953 239 VLTAE 243 (792)
Q Consensus 239 laS~s 243 (792)
+.+..
T Consensus 181 V~~~~ 185 (253)
T PF10647_consen 181 VLGRS 185 (253)
T ss_pred EEeCC
Confidence 55443
No 364
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.97 E-value=20 Score=40.88 Aligned_cols=137 Identities=16% Similarity=0.205 Sum_probs=78.4
Q ss_pred EEcCCCCEEEEEEC---CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEecc
Q 036953 102 AFSPDGRTLASTHG---DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDF 178 (792)
Q Consensus 102 afSPDG~~LaSGS~---DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h 178 (792)
+|.+||++|+.++. ...+.+.|+.+++..+.-.+-.....+..+++ +.+.++-....+.|+-.|+.+++....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~-~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSP-DDRALYYVKNGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-T-TSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEec-CCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence 56789988776665 45677779998886655443323233567788 667777666778999999999877666643
Q ss_pred C-CCeeEEEE--cCCCcEEEEEc----C-------------------CeEEEEECCCCCcccCCeEEecCCCCeEEEEEc
Q 036953 179 Y-RPIASIAF--HAEGELLAVAS----G-------------------HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFH 232 (792)
Q Consensus 179 ~-s~V~sVaf--SpdG~~LasgS----d-------------------d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafS 232 (792)
. ..+-...| +.|+..++..- + .+|...|+++++. ..+......+.-+.|+
T Consensus 121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~----~~v~~~~~wlgH~~fs 196 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER----KVVFEDTDWLGHVQFS 196 (386)
T ss_dssp -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E----EEEEEESS-EEEEEEE
T ss_pred CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce----eEEEecCccccCcccC
Confidence 3 33333555 34555554331 0 1367778877663 3455567889999999
Q ss_pred cCCCeEEEEEe
Q 036953 233 PHAAPFVLTAE 243 (792)
Q Consensus 233 PdG~~LlaS~s 243 (792)
|....+++=|.
T Consensus 197 P~dp~li~fCH 207 (386)
T PF14583_consen 197 PTDPTLIMFCH 207 (386)
T ss_dssp TTEEEEEEEEE
T ss_pred CCCCCEEEEec
Confidence 98888877665
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.93 E-value=21 Score=40.97 Aligned_cols=184 Identities=15% Similarity=0.154 Sum_probs=92.2
Q ss_pred CCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCC---c--CCCCCCe-----EEEEEcCCC
Q 036953 38 SPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCP---L--VPPPRST-----IAAAFSPDG 107 (792)
Q Consensus 38 s~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~---L--~gH~~~V-----~sLafSPDG 107 (792)
...++.+.+..|.. ++++.-+ |.....|+....++.+++++..... + .-....| ....+..+|
T Consensus 67 s~sG~ll~~i~w~~-~~iv~~~------wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 67 SSSGKLLSSIPWDS-GRIVGMG------WTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred CCCCCEeEEEEECC-CCEEEEE------ECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 34455677888877 5555444 5667888888999999999885222 1 0111122 222333345
Q ss_pred CEEEEEECCCeEEEEECCCCc-EEEEec---CCCC------CcEE-EEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 108 RTLASTHGDHTVKIIDCQTGN-CLKVLS---GHRR------TPWV-VRFHPLRSEILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk-~v~~L~---gH~~------~Vts-VafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
-.+++ .++.+.+.+-.... ..+.+. .... .... ..++. +....+....++.+.+.+-...+. +
T Consensus 140 ivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 IVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS-DRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred EEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec-CcceEEEEecCCEEEEEEcccccc---c
Confidence 33333 34444443322211 111111 1000 0000 12232 333344444444555333222111 3
Q ss_pred ccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 177 DFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 177 ~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
...+++..++.||+|+++|.-.+ +.+.+.+..-.+... ............+.|.-+..
T Consensus 214 ~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~--e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 214 DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLC--EFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeE--EeecCcCCCCcEEEEECCCc
Confidence 33568999999999999988774 458787764443221 11122235567788875543
No 366
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=92.78 E-value=1.9 Score=47.13 Aligned_cols=135 Identities=9% Similarity=0.119 Sum_probs=78.1
Q ss_pred CCEEEEEEC----------CCeEEEEECCCC----cEEEEe--cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 107 GRTLASTHG----------DHTVKIIDCQTG----NCLKVL--SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 107 G~~LaSGS~----------DGtVrIWDl~tg----k~v~~L--~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
-.+|++|.. .|.|.++++... ..+..+ ....++|++++--. +.++++ ..+.|.+|++...
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~--~~lv~~--~g~~l~v~~l~~~ 117 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFN--GRLVVA--VGNKLYVYDLDNS 117 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEET--TEEEEE--ETTEEEEEEEETT
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhC--CEEEEe--ecCEEEEEEccCc
Confidence 456777653 288999999874 122222 23578899988653 443333 3588999999887
Q ss_pred c-EEEEec--cCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCc
Q 036953 171 E-CIGSCD--FYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 171 ~-~v~t~~--h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
+ ....-. ....+.++... ++++++|. .+.+.++.++.....-...........++++.|-++++.++++....+
T Consensus 118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 7 444433 34456666554 56888887 444666654432211111222334567899999877776666555444
Q ss_pred c
Q 036953 247 L 247 (792)
Q Consensus 247 L 247 (792)
+
T Consensus 196 l 196 (321)
T PF03178_consen 196 L 196 (321)
T ss_dssp E
T ss_pred E
Confidence 3
No 367
>PRK10115 protease 2; Provisional
Probab=92.75 E-value=22 Score=43.71 Aligned_cols=183 Identities=12% Similarity=-0.010 Sum_probs=91.1
Q ss_pred eeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc--CCCCCCeEEEEEcCCCCEEEEEECC-----
Q 036953 44 VPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL--VPPPRSTIAAAFSPDGRTLASTHGD----- 116 (792)
Q Consensus 44 V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L--~gH~~~V~sLafSPDG~~LaSGS~D----- 116 (792)
+....|+|++++++.+. +. .+.+...|++.+..++.. ......-..++|.+|++.|+....+
T Consensus 129 l~~~~~Spdg~~la~~~------d~-----~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~ 197 (686)
T PRK10115 129 LGGMAITPDNTIMALAE------DF-----LSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLL 197 (686)
T ss_pred EeEEEECCCCCEEEEEe------cC-----CCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCC
Confidence 44455666666554441 10 112233466777765541 1122222569999999887766543
Q ss_pred -CeEEEEECCCC--cEEEEecCCCCCcEEEEEccCCCCEEEEEe---CCCeEEEEECC--CCcEEEEeccC-CCeeEEEE
Q 036953 117 -HTVKIIDCQTG--NCLKVLSGHRRTPWVVRFHPLRSEILASGS---LDHEVRLWDAN--TSECIGSCDFY-RPIASIAF 187 (792)
Q Consensus 117 -GtVrIWDl~tg--k~v~~L~gH~~~VtsVafSP~dg~lLaSgS---~DgtVrLWDl~--tg~~v~t~~h~-s~V~sVaf 187 (792)
..|+.+++.++ +-...+........-..+.+.++++++..+ .++.+.+|+.. +++....+... .....+.
T Consensus 198 ~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 276 (686)
T PRK10115 198 PYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD- 276 (686)
T ss_pred CCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-
Confidence 36888888887 444455543333332233333666655443 34578888853 34433333322 2223333
Q ss_pred cCCCcEEEEEcCC----eEEEEECCCCCcccCCeEEecC--CCCeEEEEEccCCCeEEEEEe
Q 036953 188 HAEGELLAVASGH----KLYIWPYNNKEEASSPIIVLKT--RRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 188 SpdG~~LasgSdd----~V~IWDlrt~~~~~~~~~~~~h--~~sVtsVafSPdG~~LlaS~s 243 (792)
+..+.+++....+ +|...++..... ...+..+ ...|..+.+. ++.|+++..
T Consensus 277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~---~~~l~~~~~~~~i~~~~~~--~~~l~~~~~ 333 (686)
T PRK10115 277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQ---WEELIPPRENIMLEGFTLF--TDWLVVEER 333 (686)
T ss_pred eCCCEEEEEEcCCCCCceEEEecCCCccc---CeEEECCCCCCEEEEEEEE--CCEEEEEEE
Confidence 3334444333321 244445543221 1223333 3367777776 555666554
No 368
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=92.73 E-value=4.2 Score=38.53 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=49.9
Q ss_pred cEEEEEcc---CCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEEC
Q 036953 140 PWVVRFHP---LRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPY 207 (792)
Q Consensus 140 VtsVafSP---~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDl 207 (792)
|+++++.. +..+.|+.|+.|..||+|+- .+.+..+.-.+.+.+++-...+++.+.-.+++|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 55666554 23478999999999999975 46788888889999999887766555555777888875
No 369
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=92.58 E-value=0.24 Score=59.81 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=81.4
Q ss_pred eeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCeEEEEeccCCCc--CCCCCCeEEEEEcCCCCEEEEEECCCeEEE
Q 036953 44 VPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAESLRHLSAKYCPL--VPPPRSTIAAAFSPDGRTLASTHGDHTVKI 121 (792)
Q Consensus 44 V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~sIrvWd~~t~~L--~gH~~~V~sLafSPDG~~LaSGS~DGtVrI 121 (792)
.+-..|+|...+++... ++-...+++.++--...+- ...+-.+.+++|+|..-.|++|-.-|.+.+
T Consensus 18 sti~SWHPsePlfAVA~------------fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVAS------------FSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDV 85 (1416)
T ss_pred ccccccCCCCceeEEEE------------ecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhccccceeEE
Confidence 34457998887765542 2223344455442211110 111223668999998889999999999999
Q ss_pred EECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECC
Q 036953 122 IDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 122 WDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~ 168 (792)
|..++.+.-.....|..+|..+.|++ ++..++|+..-|.|.+|.+.
T Consensus 86 ~~~~~~e~htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 86 QKTNTTETHTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EecCCceeeeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 99988776666668999999999999 99999999999999999765
No 370
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.57 E-value=0.67 Score=57.83 Aligned_cols=145 Identities=11% Similarity=0.064 Sum_probs=93.1
Q ss_pred CeEEEEEcCCCCEEEEE--ECCCeEEEEECCCCcE-----EEEec------CCCCCcEEEEEccCCCCEEEEEeCCCeEE
Q 036953 97 STIAAAFSPDGRTLAST--HGDHTVKIIDCQTGNC-----LKVLS------GHRRTPWVVRFHPLRSEILASGSLDHEVR 163 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSG--S~DGtVrIWDl~tgk~-----v~~L~------gH~~~VtsVafSP~dg~lLaSgS~DgtVr 163 (792)
.+..+..++|+...++. +++-.|..||+.+-.. ..-|. .......++.|+|.=....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 46667777787655443 4445788999864321 11111 23345677889985455566777899888
Q ss_pred EEECCCC-cEEEEeccCCCeeEEEEcCCCcEEEEEcC-CeEEEEECCCC--CcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 164 LWDANTS-ECIGSCDFYRPIASIAFHAEGELLAVASG-HKLYIWPYNNK--EEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 164 LWDl~tg-~~v~t~~h~s~V~sVafSpdG~~LasgSd-d~V~IWDlrt~--~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
+..+... +.+..+......++++|+|.|+.++.|-. +++.-|-..-. ..+..+-. .....|.+|+|--...+++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~--~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPV--EENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCc--CCCcceeEEEEecceeEEE
Confidence 8877643 33344567788999999999999999984 44666654332 22211111 1257899999998888776
Q ss_pred EEEe
Q 036953 240 LTAE 243 (792)
Q Consensus 240 aS~s 243 (792)
+-+.
T Consensus 260 vy~n 263 (1405)
T KOG3630|consen 260 VYGN 263 (1405)
T ss_pred Eecc
Confidence 6443
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.70 E-value=12 Score=41.45 Aligned_cols=104 Identities=16% Similarity=0.207 Sum_probs=73.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECC-CeEEEEECCC--C----cE-EEEecCCCCCcEEEEEccCCCCEEEEEeCCC-eEE
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGD-HTVKIIDCQT--G----NC-LKVLSGHRRTPWVVRFHPLRSEILASGSLDH-EVR 163 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~D-GtVrIWDl~t--g----k~-v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg-tVr 163 (792)
++-..-+.++||||++.|+.+... +.|.-|++.. + +. ...+..+.+..-+++... ++.+.+++..++ .|.
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~ 238 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVV 238 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEE
Confidence 344556799999999999888664 7788777752 1 11 222334567777888887 888776555554 899
Q ss_pred EEECCCCcEEEEeccC-CCeeEEEEc-CCCcEEEEEc
Q 036953 164 LWDANTSECIGSCDFY-RPIASIAFH-AEGELLAVAS 198 (792)
Q Consensus 164 LWDl~tg~~v~t~~h~-s~V~sVafS-pdG~~LasgS 198 (792)
.|+.. ++.+..+... ..+++++|- ++.+.|++.+
T Consensus 239 ~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 239 RFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred EECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 99998 8888888655 778888884 5556665555
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.70 E-value=24 Score=38.83 Aligned_cols=168 Identities=18% Similarity=0.185 Sum_probs=99.0
Q ss_pred ecCCcEEEEEeCCCeEEEEeccCCCcCCCCCCeEEEEEcC-CCCEEEEEECCCe-EEEEECCCCcEEEEecCCCC--CcE
Q 036953 66 RDAKRGLVSWVEAESLRHLSAKYCPLVPPPRSTIAAAFSP-DGRTLASTHGDHT-VKIIDCQTGNCLKVLSGHRR--TPW 141 (792)
Q Consensus 66 ~d~~~~L~S~s~d~sIrvWd~~t~~L~gH~~~V~sLafSP-DG~~LaSGS~DGt-VrIWDl~tgk~v~~L~gH~~--~Vt 141 (792)
+|+...++...+++++..--. -......|+|+| ....++.+-.-|+ ..++|.+..+...++...++ .--
T Consensus 45 ~dgs~g~a~~~eaGk~v~~~~-------lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyG 117 (366)
T COG3490 45 RDGSFGAATLSEAGKIVFATA-------LPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYG 117 (366)
T ss_pred cCCceeEEEEccCCceeeeee-------cccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeec
Confidence 455556666666665432111 123344677887 3445555555454 56888887765544432111 112
Q ss_pred EEEEccCCCCEEEEEeCC-----CeEEEEECCCC-cEEEEec-cCCCeeEEEEcCCCcEEEEEcCC--------------
Q 036953 142 VVRFHPLRSEILASGSLD-----HEVRLWDANTS-ECIGSCD-FYRPIASIAFHAEGELLAVASGH-------------- 200 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~D-----gtVrLWDl~tg-~~v~t~~-h~s~V~sVafSpdG~~LasgSdd-------------- 200 (792)
.-+|+| |+.+|...-.| |.|-+||.+.+ +.+..+. |.-....+.|.+||+.++.+..+
T Consensus 118 HGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNl 196 (366)
T COG3490 118 HGVFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNL 196 (366)
T ss_pred ccccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccch
Confidence 246899 99988876554 67889999854 3344442 55556789999999999988642
Q ss_pred -----eEEEEECCCCCcccCCeEEe--cCCCCeEEEEEccCCCeEEEEEe
Q 036953 201 -----KLYIWPYNNKEEASSPIIVL--KTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 201 -----~V~IWDlrt~~~~~~~~~~~--~h~~sVtsVafSPdG~~LlaS~s 243 (792)
.+.+.|..+++.+. ...+. .+.-+|..++..+||. +.+.|.
T Consensus 197 dsMePSlvlld~atG~lie-kh~Lp~~l~~lSiRHld~g~dgt-vwfgcQ 244 (366)
T COG3490 197 DSMEPSLVLLDAATGNLIE-KHTLPASLRQLSIRHLDIGRDGT-VWFGCQ 244 (366)
T ss_pred hhcCccEEEEeccccchhh-hccCchhhhhcceeeeeeCCCCc-EEEEEE
Confidence 13334434444332 11111 2455788999999998 555554
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.57 E-value=1.4 Score=51.37 Aligned_cols=134 Identities=12% Similarity=0.101 Sum_probs=88.9
Q ss_pred CCCEEE-EEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCC-------EEEEEeCCCeEEEEECCCCcE--EEE
Q 036953 106 DGRTLA-STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSE-------ILASGSLDHEVRLWDANTSEC--IGS 175 (792)
Q Consensus 106 DG~~La-SGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~-------lLaSgS~DgtVrLWDl~tg~~--v~t 175 (792)
+.+.|+ ++.....++-.|+..|+.+....-|.. |.-+.+.| +.+ .-+.|-.|+.|.-||.+-... +..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~-d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITP-DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccC-CcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 444444 455556788889999999888876665 77777877 321 223455688899999984321 111
Q ss_pred -----eccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 176 -----CDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 176 -----~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
+.......|.+-.-+| ++++|+ ++.|++||- .+... ...+.+-..+|..|..+.+|++|+++|..+
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~A--KTAlPgLG~~I~hVdvtadGKwil~Tc~ty 493 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRA--KTALPGLGDAIKHVDVTADGKWILATCKTY 493 (644)
T ss_pred eeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhh--hhcccccCCceeeEEeeccCcEEEEecccE
Confidence 1233445566655555 566666 666999997 33322 234455678999999999999999999844
No 374
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.53 E-value=3.3 Score=49.93 Aligned_cols=110 Identities=14% Similarity=0.142 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEec-CCCCCcEEEEEcc-CCCCEEEEEeCCCeEEEEECC-----CC
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLS-GHRRTPWVVRFHP-LRSEILASGSLDHEVRLWDAN-----TS 170 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~-gH~~~VtsVafSP-~dg~lLaSgS~DgtVrLWDl~-----tg 170 (792)
..-+.-|.-++..++-+...++.|||...+.....-. ...+.|.++.|.. .+++.+++.+-.+.|.++.-. +.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcC
Confidence 3344444444444444445679999998876443222 4578899999964 378889999999999998542 11
Q ss_pred ----cEEEEe---cc-CCCeeEEEEcCCCcEEEEEcCCeEEEEECC
Q 036953 171 ----ECIGSC---DF-YRPIASIAFHAEGELLAVASGHKLYIWPYN 208 (792)
Q Consensus 171 ----~~v~t~---~h-~s~V~sVafSpdG~~LasgSdd~V~IWDlr 208 (792)
.+++.+ .+ ..+|.+..|.++|.+++.+ ++.++|+|-.
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 234443 23 3689999999998765554 4669998753
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.44 E-value=1.8 Score=50.52 Aligned_cols=135 Identities=19% Similarity=0.183 Sum_probs=85.3
Q ss_pred EEEEeCCCeEEEEeccCCCcCC---CCCCeEEEEEcCCCC--EE-----EEEECCCeEEEEECCCCc--EEEEecCCC--
Q 036953 72 LVSWVEAESLRHLSAKYCPLVP---PPRSTIAAAFSPDGR--TL-----ASTHGDHTVKIIDCQTGN--CLKVLSGHR-- 137 (792)
Q Consensus 72 L~S~s~d~sIrvWd~~t~~L~g---H~~~V~sLafSPDG~--~L-----aSGS~DGtVrIWDl~tgk--~v~~L~gH~-- 137 (792)
+.+......|...|++.+++.. ..+.|+-+.+.|+.+ .+ +.|-.|..|.-||.+-.. .+..-++|.
T Consensus 349 l~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 349 LMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 3444445556666666554321 122377777777543 22 445567889999976322 233333332
Q ss_pred --CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECC
Q 036953 138 --RTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHKLYIWPYN 208 (792)
Q Consensus 138 --~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~IWDlr 208 (792)
....|.+-. ...+++.||.+|.|||||--..+....+ ....+|..|..+.+|++|+..++..|.+.|+.
T Consensus 429 ~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 429 TKNNFSCFATT--ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred cccccceeeec--CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 223344433 5678999999999999997332222223 47789999999999999999998887777764
No 376
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.22 E-value=6.2 Score=44.32 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=57.3
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-eEEEEECCC--Cc--EEEEecCCCCCcEEEEEccCCCCEEEEEeCC
Q 036953 96 RSTIAAAFSPDGRTLASTH-----------GDH-TVKIIDCQT--GN--CLKVLSGHRRTPWVVRFHPLRSEILASGSLD 159 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS-----------~DG-tVrIWDl~t--gk--~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D 159 (792)
.....|+|.++|+.+++-. ..+ .|.+++-.. |+ ....|...-....+++|.+ ++ ++++ ..+
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~-~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVA-TPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEe-CCC
Confidence 3466889999998776642 123 677665432 33 2344544445678899988 66 5554 444
Q ss_pred CeEEEEECCCC-----cE--E-EEecc-----CCCeeEEEEcCCCcEEEEEc
Q 036953 160 HEVRLWDANTS-----EC--I-GSCDF-----YRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 160 gtVrLWDl~tg-----~~--v-~t~~h-----~s~V~sVafSpdG~~LasgS 198 (792)
...++.|.... +. + ..+.. ......+.|.|||.+.++-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 43344455321 21 1 11222 24477899999998766544
No 377
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.78 E-value=6.2 Score=42.67 Aligned_cols=104 Identities=12% Similarity=0.035 Sum_probs=75.5
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCee-EEE
Q 036953 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIA-SIA 186 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~-sVa 186 (792)
.+++.|+-.+.+.--|..+|+.++.-. -...|.+-+.- -+++++.|...+.+++.+.++|...+.+.....|. ...
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 456777888888888999998766533 22333332222 25679999999999999999998888876444433 234
Q ss_pred EcCCCcEEEEEcCC-eEEEEECCCCCccc
Q 036953 187 FHAEGELLAVASGH-KLYIWPYNNKEEAS 214 (792)
Q Consensus 187 fSpdG~~LasgSdd-~V~IWDlrt~~~~~ 214 (792)
..+++..+..++.+ ..+..|.++...+.
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEE
Confidence 47889999999954 49999999888654
No 378
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=90.37 E-value=0.72 Score=36.89 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC 129 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~ 129 (792)
...|.+++|+|....||.+..||.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4543
No 379
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.21 E-value=10 Score=42.00 Aligned_cols=144 Identities=15% Similarity=0.103 Sum_probs=74.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-Cc
Q 036953 93 PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-SE 171 (792)
Q Consensus 93 gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-g~ 171 (792)
+-...+..+..++||++++++..-....-||--...-...-..-...|..+.|.| ++.+.+. ...+.|+.=+... .+
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~-~~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWML-ARGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEE-ETTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEE-eCCcEEEEccCCCCcc
Confidence 4456788999999999988886665566777432211111223567899999999 7666554 4888888887222 22
Q ss_pred EEEE----ec-cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 172 CIGS----CD-FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 172 ~v~t----~~-h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
.... +. ..-.+..++|.+++...++++++. .+.....++..+.......-...++.+.|..+.+-++
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~ 291 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV 291 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCcc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceEE
Confidence 1111 11 223478999999999999888774 3444445543220001112245688899976655443
No 380
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=90.18 E-value=4 Score=47.03 Aligned_cols=164 Identities=13% Similarity=0.108 Sum_probs=80.1
Q ss_pred CeEEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEEC--------------------CCeEEEEECCCCcEEEEecCC-C
Q 036953 79 ESLRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTHG--------------------DHTVKIIDCQTGNCLKVLSGH-R 137 (792)
Q Consensus 79 ~sIrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS~--------------------DGtVrIWDl~tgk~v~~L~gH-~ 137 (792)
+.+..|+.... ...--+.+-|.|.-+.++|... -.++.+||+.+.+.++++.-- .
T Consensus 168 ~v~g~We~~~~----~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 168 EVKGRWEKDRG----PQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp -EEEE--SB-T----T------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred cccceeccCCC----CCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 44556654321 1234567778887777777642 368999999999999888632 2
Q ss_pred -CCcEEEEEcc--CCCCEEEEEeCCCeEEEEEC-CCCcEE----EEec---c---------------CCCeeEEEEcCCC
Q 036953 138 -RTPWVVRFHP--LRSEILASGSLDHEVRLWDA-NTSECI----GSCD---F---------------YRPIASIAFHAEG 191 (792)
Q Consensus 138 -~~VtsVafSP--~dg~lLaSgS~DgtVrLWDl-~tg~~v----~t~~---h---------------~s~V~sVafSpdG 191 (792)
..+..++|.. ....-++.+....+|..|-- ..++.. ..+. . ..-|+.|..|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 2455677753 22233455555556655533 343221 1111 0 2347899999999
Q ss_pred cEEEEEc--CCeEEEEECCCCCcccCCeE-EecC---------------CCCeEEEEEccCCCeEEEEEeeCc
Q 036953 192 ELLAVAS--GHKLYIWPYNNKEEASSPII-VLKT---------------RRSLRAVHFHPHAAPFVLTAEVND 246 (792)
Q Consensus 192 ~~LasgS--dd~V~IWDlrt~~~~~~~~~-~~~h---------------~~sVtsVafSPdG~~LlaS~s~~d 246 (792)
++|.++. ++.|+.||+......+..-. ..+. .+...-|..|.||++|.+|.+++.
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSLys 396 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNSLYS 396 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE----H
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEeeccc
Confidence 9999998 67799999987765431111 1111 112367889999999999999653
No 381
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=88.67 E-value=22 Score=41.64 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=64.8
Q ss_pred EEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEE------------------eCCCeEEEEECCCC
Q 036953 109 TLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASG------------------SLDHEVRLWDANTS 170 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSg------------------S~DgtVrLWDl~tg 170 (792)
.++.++.+|.+...|..+|+.+....... ..+..+| ..++.+ ..++.+...|+.++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 57788889999999999999988765211 1123333 233322 24678999999999
Q ss_pred cEEEEeccC---------CCe--eEEEEcCCCcEEEEEc-CCeEEEEECCCCCccc
Q 036953 171 ECIGSCDFY---------RPI--ASIAFHAEGELLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 171 ~~v~t~~h~---------s~V--~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
+.++..... .+. ..+. -.+..|++++ ++.|+.+|.++++...
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceee
Confidence 988887543 111 1122 2456666666 6679999999998653
No 382
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=88.43 E-value=2.2 Score=45.08 Aligned_cols=104 Identities=13% Similarity=0.091 Sum_probs=64.2
Q ss_pred eecCCcEEEEEeCCCeEEEEeccCC-C----cCCCCCCeEEEEE-cCCCCEEEEEECCCeEEEEECCCCcEEEEecCCC-
Q 036953 65 VRDAKRGLVSWVEAESLRHLSAKYC-P----LVPPPRSTIAAAF-SPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHR- 137 (792)
Q Consensus 65 v~d~~~~L~S~s~d~sIrvWd~~t~-~----L~gH~~~V~sLaf-SPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~- 137 (792)
+..+...++.+..++.+.+|+.... . ...-...|.++-- -.++.+..++..|+.|+.|++.-++.+.....|+
T Consensus 66 v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 66 VVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred ecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC
Confidence 3345667888888999998887611 1 1111222333322 2256688899999999999999888777776676
Q ss_pred CCcEEEEEccCCCCEEEEE--eCCCeEEEEECCC
Q 036953 138 RTPWVVRFHPLRSEILASG--SLDHEVRLWDANT 169 (792)
Q Consensus 138 ~~VtsVafSP~dg~lLaSg--S~DgtVrLWDl~t 169 (792)
..+....... .+..++.. |.|..++.|++..
T Consensus 146 ~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 3443333333 34455555 5556666666543
No 383
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.10 E-value=1.3 Score=55.07 Aligned_cols=70 Identities=24% Similarity=0.368 Sum_probs=54.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE---ccCCCCEEEEEeCCCeEEEEEC
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF---HPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf---SP~dg~lLaSgS~DgtVrLWDl 167 (792)
..+|++++|+.||+.++.|-.+|.|.+||...++..+.+..|..+.+++-+ .. ++..++++..-|. +|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 467999999999999999999999999999999999998877776666543 33 4456666655554 4543
No 384
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.84 E-value=23 Score=39.00 Aligned_cols=159 Identities=13% Similarity=0.076 Sum_probs=93.7
Q ss_pred EEEEEccCCCCEEEEEeCCCe-EEEEECCCCcEEEEec---cCCCeeEEEEcCCCcEEEEEcC------CeEEEEECCCC
Q 036953 141 WVVRFHPLRSEILASGSLDHE-VRLWDANTSECIGSCD---FYRPIASIAFHAEGELLAVASG------HKLYIWPYNNK 210 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~Dgt-VrLWDl~tg~~v~t~~---h~s~V~sVafSpdG~~LasgSd------d~V~IWDlrt~ 210 (792)
.++.|+|....-++.+-.-|+ ..++|....+...++. .....--=.||+||.+|+..-+ +-|-|||.+..
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 347888866666777766666 5688998876655542 1111223468999999998752 22899999744
Q ss_pred CcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeCccc--cCCCceeeecCCCcccCCCCceEEEEecCCCEEEEeeccC
Q 036953 211 EEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVNDLD--SSDSSMTRATSPGYLRYPPPAVFVANAQSGDHVSLAAELP 288 (792)
Q Consensus 211 ~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~dLr--s~d~~~~l~t~sg~~~~p~~~~~l~~~ssG~~~~l~s~l~ 288 (792)
-.. .-....|.-.-..+.|.+||+.++...+--... ..-.++.+. ...|++.+.+..+|+.+.--. ++
T Consensus 151 fqr--vgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNld-------sMePSlvlld~atG~liekh~-Lp 220 (366)
T COG3490 151 FQR--VGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLD-------SMEPSLVLLDAATGNLIEKHT-LP 220 (366)
T ss_pred cce--ecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchh-------hcCccEEEEeccccchhhhcc-Cc
Confidence 321 112333444456789999999887766511111 111112121 133556666656666522111 11
Q ss_pred cccCCCceEEEeEECCCCcEEE
Q 036953 289 LMSSLPFLIVPSVSIDDSRIDL 310 (792)
Q Consensus 289 ~l~gh~~~VwdV~~SpDGr~lv 310 (792)
-+.+...|--++..+||+...
T Consensus 221 -~~l~~lSiRHld~g~dgtvwf 241 (366)
T COG3490 221 -ASLRQLSIRHLDIGRDGTVWF 241 (366)
T ss_pred -hhhhhcceeeeeeCCCCcEEE
Confidence 012566788899999999887
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=87.78 E-value=1.6 Score=46.16 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=62.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCc-EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cC-CCe
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGN-CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FY-RPI 182 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk-~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~-s~V 182 (792)
-+..++.|..+|.|++|+.+... ....+..-...|.++--.-.++.+.+++..|+.|+.|++.-.+.+.... |+ ..+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~ 148 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESG 148 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCc
Confidence 46789999999999999976221 1111111222333332222355688999999999999998777665553 33 344
Q ss_pred eEEEEcCCCcEEEEE--cCC-eEEEEECCCC
Q 036953 183 ASIAFHAEGELLAVA--SGH-KLYIWPYNNK 210 (792)
Q Consensus 183 ~sVafSpdG~~Lasg--Sdd-~V~IWDlrt~ 210 (792)
........++.++.+ |.+ .++.|++..-
T Consensus 149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 149 EELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 444444445555554 322 2666665443
No 386
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=87.66 E-value=13 Score=43.53 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=65.3
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcCCCC----C------CeE--EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCC
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLVPPP----R------STI--AAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH 136 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~gH~----~------~V~--sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH 136 (792)
+..++....++.+.-+|..++++.-+. . .+. .+... ++..++.++.++.|+-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 445666666777777777766432111 0 000 11111 2267888889999999999999999888643
Q ss_pred CCC-----c-EEEEEccCCCCEEEEEe---------CCCeEEEEECCCCcEEEEecc
Q 036953 137 RRT-----P-WVVRFHPLRSEILASGS---------LDHEVRLWDANTSECIGSCDF 178 (792)
Q Consensus 137 ~~~-----V-tsVafSP~dg~lLaSgS---------~DgtVrLWDl~tg~~v~t~~h 178 (792)
... + ....+. + .+++.++ .++.+..+|..+|+.++.+..
T Consensus 140 ~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 140 DQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 221 1 112222 2 3454443 367899999999999888753
No 387
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.07 E-value=2 Score=53.59 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=70.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCcE-EEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCee
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGNC-LKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIA 183 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk~-v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~ 183 (792)
.+..++.|+..|.+-..|....-. ...=..-.++|++++|+. ++.+++.|-.+|-|.+||+..++..+.+. +..+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 456788888888898888754311 111112457999999998 99999999999999999999999888874 444444
Q ss_pred ---EEEEcCCCcEEEEEcCCeEEEEEC
Q 036953 184 ---SIAFHAEGELLAVASGHKLYIWPY 207 (792)
Q Consensus 184 ---sVafSpdG~~LasgSdd~V~IWDl 207 (792)
-+.+..++..+.++..++ .+|.+
T Consensus 177 ~vi~v~~t~~nS~llt~D~~G-sf~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGG-SFWKL 202 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCC-ceEEE
Confidence 444555666666665333 25544
No 388
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=86.55 E-value=1.6 Score=34.87 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=29.4
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
...|..++|+| ..+++|.++.||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 35689999999 8999999999999999998 4443
No 389
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=86.55 E-value=46 Score=37.54 Aligned_cols=114 Identities=22% Similarity=0.175 Sum_probs=71.0
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCcEE--EEecCC----------CCCcEEEEEccCCCCEEEEEe---CC-----
Q 036953 100 AAAFSPDGRTLASTHGDHTVKIIDCQTGNCL--KVLSGH----------RRTPWVVRFHPLRSEILASGS---LD----- 159 (792)
Q Consensus 100 sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v--~~L~gH----------~~~VtsVafSP~dg~lLaSgS---~D----- 159 (792)
.-++...+..++--+.+|.|+--|+...... ..+.-- .+.-.-+++++ ..++|+.-- .+
T Consensus 188 ~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~-~~~rlyvLMh~g~~gsHKd 266 (342)
T PF06433_consen 188 HPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA-ASGRLYVLMHQGGEGSHKD 266 (342)
T ss_dssp --EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET-TTTEEEEEEEE--TT-TTS
T ss_pred ccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc-ccCeEEEEecCCCCCCccC
Confidence 3345555666666788899888887655421 112100 12233477877 444444321 11
Q ss_pred --CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCc-EEEEEc--CCeEEEEECCCCCccc
Q 036953 160 --HEVRLWDANTSECIGSCDFYRPIASIAFHAEGE-LLAVAS--GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 160 --gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~-~LasgS--dd~V~IWDlrt~~~~~ 214 (792)
.+|.++|+.+++.+..+....++.+|..+.+.+ +|++.+ ++.|.+||..+++...
T Consensus 267 pgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 267 PGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp -EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred CceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 247888999999999998777899999998876 555443 4559999999987543
No 390
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.98 E-value=4.6 Score=42.43 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=47.6
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEe---------------ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCC
Q 036953 149 RSEILASGSLDHEVRLWDANTSECIGSC---------------DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 149 dg~lLaSgS~DgtVrLWDl~tg~~v~t~---------------~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~ 211 (792)
++++++..+.+|.+++||+.+++.+..- .....|..+..+.+|.-|++-+++..+.||..-..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~~ 98 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLGC 98 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccce
Confidence 5688999999999999999998765432 13356777888888877777777678888875543
No 391
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=84.59 E-value=14 Score=44.86 Aligned_cols=104 Identities=16% Similarity=0.241 Sum_probs=63.5
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe--ccCCCeeEEEEc--CCCc-EEEEEcCCeEEEEECCCCC--
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC--DFYRPIASIAFH--AEGE-LLAVASGHKLYIWPYNNKE-- 211 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~--~h~s~V~sVafS--pdG~-~LasgSdd~V~IWDlrt~~-- 211 (792)
.+.-+.-+. -++..+.-+...++.|||.+.+.....- ...+.|.+++|. |+++ .|++|-.+.|.+|--.+..
T Consensus 31 ~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 334444444 3344344344557999999988755443 348899999996 5666 4556668888888543211
Q ss_pred ---cccCCe---EEec-CCCCeEEEEEccCCCeEEEEEe
Q 036953 212 ---EASSPI---IVLK-TRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 212 ---~~~~~~---~~~~-h~~sVtsVafSPdG~~LlaS~s 243 (792)
....+. .... ...+|.+..|.++|..++.++.
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC
Confidence 111111 1122 3468999999999996665554
No 392
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.62 E-value=44 Score=36.00 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=78.4
Q ss_pred CcEEEEEeCCCeEEE-EeccCCCcCCCCCCeEEEEEcCCCCEEEEE-ECCCeEEEEE--CCCCc-----EEEEecC----
Q 036953 69 KRGLVSWVEAESLRH-LSAKYCPLVPPPRSTIAAAFSPDGRTLAST-HGDHTVKIID--CQTGN-----CLKVLSG---- 135 (792)
Q Consensus 69 ~~~L~S~s~d~sIrv-Wd~~t~~L~gH~~~V~sLafSPDG~~LaSG-S~DGtVrIWD--l~tgk-----~v~~L~g---- 135 (792)
++.|.++..++.+.+ |+. -.--+.++|+-|.+.+..- +.+-+|.-|| +.+|. .+..++.
T Consensus 138 ~g~Ly~~~~~h~v~~i~~~--------v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~ 209 (310)
T KOG4499|consen 138 GGELYSWLAGHQVELIWNC--------VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPF 209 (310)
T ss_pred ccEEEEeccCCCceeeehh--------ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCc
Confidence 445566655555443 221 1224578999888777654 5677887787 55553 2333332
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec-cCCCeeEEEEcCC-CcEEEEEc
Q 036953 136 HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD-FYRPIASIAFHAE-GELLAVAS 198 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-h~s~V~sVafSpd-G~~LasgS 198 (792)
..-..-+++..- ++++.+++-..++|...|..+|+.+..+. ....+++++|--. -..|++..
T Consensus 210 e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 210 ESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 112234566666 88999999999999999999999999885 5678999999633 24454443
No 393
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=83.55 E-value=30 Score=38.87 Aligned_cols=98 Identities=8% Similarity=0.061 Sum_probs=55.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCC-----CcEEE---EecC----CCCCcEEEEEccCCCCEEEEEeCC-----
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQT-----GNCLK---VLSG----HRRTPWVVRFHPLRSEILASGSLD----- 159 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~t-----gk~v~---~L~g----H~~~VtsVafSP~dg~lLaSgS~D----- 159 (792)
....+++.+++ |++++.+...++.|.+. ++... .+.. +......++|.| |+.+.++.+..
T Consensus 73 ~p~Gi~~~~~G--lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 73 MVTGLAVAVGG--VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKV 149 (367)
T ss_pred CccceeEecCC--EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCcee
Confidence 45788898888 44445554333445432 12221 2222 234577899999 88887766521
Q ss_pred --------------CeEEEEECCCCcEEEEec-cCCCeeEEEEcCCCcEEEEEc
Q 036953 160 --------------HEVRLWDANTSECIGSCD-FYRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 160 --------------gtVrLWDl~tg~~v~t~~-h~s~V~sVafSpdG~~LasgS 198 (792)
+.|.-+|..+++.. .+. .......++|+++|+++++-.
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEE-EEecCcCCCccceECCCCCEEEEcc
Confidence 33455555544322 222 223356899999999887654
No 394
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=83.33 E-value=16 Score=41.80 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=50.2
Q ss_pred EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEec---------cCCCeeEEEEc-----CCC---cE
Q 036953 131 KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCD---------FYRPIASIAFH-----AEG---EL 193 (792)
Q Consensus 131 ~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~---------h~s~V~sVafS-----pdG---~~ 193 (792)
..++...+.|++++.+ |-.+++.|..+|.+.+.|+|....+..-. ....++++.|. .|+ -.
T Consensus 80 ~l~~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 80 TLLDAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp EEE---S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred hheeccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 3444567899999997 57799999999999999998887776631 23457788775 233 35
Q ss_pred EEEEc-CCeEEEEECC
Q 036953 194 LAVAS-GHKLYIWPYN 208 (792)
Q Consensus 194 LasgS-dd~V~IWDlr 208 (792)
+++|. .+.+.+|.+.
T Consensus 158 L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKIL 173 (395)
T ss_dssp EEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCEEEEEEe
Confidence 66666 4558888774
No 395
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=83.30 E-value=75 Score=34.70 Aligned_cols=120 Identities=16% Similarity=0.269 Sum_probs=69.9
Q ss_pred eEEEEECCCCcEEEEecC-CCCCcEEE---EEccC---CCCEEEEEeC----------CCeEEEEECCCC-------cEE
Q 036953 118 TVKIIDCQTGNCLKVLSG-HRRTPWVV---RFHPL---RSEILASGSL----------DHEVRLWDANTS-------ECI 173 (792)
Q Consensus 118 tVrIWDl~tgk~v~~L~g-H~~~VtsV---afSP~---dg~lLaSgS~----------DgtVrLWDl~tg-------~~v 173 (792)
.|+|.|..+.+.+..+.- ....+.++ .+..+ ...+++.|+. .|.|.++++... +.+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 577778777766655431 12233333 33321 1466666642 288999999884 223
Q ss_pred EEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 174 GSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 174 ~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
......++|.+++-- ++ +|+++.+.+|++|++...+... ..........+.++... +++++++.
T Consensus 83 ~~~~~~g~V~ai~~~-~~-~lv~~~g~~l~v~~l~~~~~l~-~~~~~~~~~~i~sl~~~--~~~I~vgD 146 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NG-RLVVAVGNKLYVYDLDNSKTLL-KKAFYDSPFYITSLSVF--KNYILVGD 146 (321)
T ss_dssp EEEEESS-EEEEEEE-TT-EEEEEETTEEEEEEEETTSSEE-EEEEE-BSSSEEEEEEE--TTEEEEEE
T ss_pred EEEeecCcceEhhhh-CC-EEEEeecCEEEEEEccCcccch-hhheecceEEEEEEecc--ccEEEEEE
Confidence 334578899998865 34 4777777889999998877221 22233334466666655 55566554
No 396
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=83.07 E-value=37 Score=36.54 Aligned_cols=142 Identities=13% Similarity=0.085 Sum_probs=82.0
Q ss_pred CCeEEEEEcCCCCEEEEEECC---------CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHGD---------HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWD 166 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~D---------GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWD 166 (792)
...+.-..+|+|++++-.-.| |.++.|-+. ..+..+...-+.-.+++|+.+...+.++-+.+-+|.-||
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEeeee
Confidence 345667788999984322122 344444432 222233333344567899873444555667888898888
Q ss_pred --CCCCc-----EEEEecc----CC-CeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEcc
Q 036953 167 --ANTSE-----CIGSCDF----YR-PIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHP 233 (792)
Q Consensus 167 --l~tg~-----~v~t~~h----~s-~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSP 233 (792)
..+|. .+..+.. +. ..-.++...+|++.+++- .++|...|..+++... .+.-....|++++|--
T Consensus 187 yd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~---eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 187 YDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILL---EIKLPTPQITSCCFGG 263 (310)
T ss_pred cCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEE---EEEcCCCceEEEEecC
Confidence 55543 2333322 11 123455567788777666 4559999999998654 2223467899999963
Q ss_pred C-CCeEEEEE
Q 036953 234 H-AAPFVLTA 242 (792)
Q Consensus 234 d-G~~LlaS~ 242 (792)
. -..+.+++
T Consensus 264 kn~d~~yvT~ 273 (310)
T KOG4499|consen 264 KNLDILYVTT 273 (310)
T ss_pred CCccEEEEEe
Confidence 3 23344444
No 397
>PRK10115 protease 2; Provisional
Probab=82.87 E-value=92 Score=38.37 Aligned_cols=111 Identities=11% Similarity=0.005 Sum_probs=66.5
Q ss_pred CCeEEEEEcCCCCEEEEEEC-----CCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCC------CeEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHG-----DHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLD------HEVRL 164 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~-----DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~D------gtVrL 164 (792)
-.+..+.|+||+++|+.+.. .-.|++.|+.+++.+........ ..++|.+ |++.|+....+ ..|..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWAN-DSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence 34677899999998887643 23588889988863322111111 4599999 66655544332 36888
Q ss_pred EECCCC--cEEEEecc-CCCee-EEEEcCCCcEEEEEc----CCeEEEEECCC
Q 036953 165 WDANTS--ECIGSCDF-YRPIA-SIAFHAEGELLAVAS----GHKLYIWPYNN 209 (792)
Q Consensus 165 WDl~tg--~~v~t~~h-~s~V~-sVafSpdG~~LasgS----dd~V~IWDlrt 209 (792)
+++.++ +-...+.. ..... .+..+.++++++..+ +..+.+|+...
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 888887 33334432 22232 333455787766544 23389998643
No 398
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=82.60 E-value=61 Score=35.93 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCe------EEEEECCC--C--cEE-----EEecCCCC--------CcEEEEEccCCCCE
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHT------VKIIDCQT--G--NCL-----KVLSGHRR--------TPWVVRFHPLRSEI 152 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGt------VrIWDl~t--g--k~v-----~~L~gH~~--------~VtsVafSP~dg~l 152 (792)
+....+.+.+++..++.-+.++. +..+++.. + ..+ ..+..-.+ -.-+|++.+ ++.+
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CCCE
Confidence 45667777765555555566665 54444432 1 001 11111111 334688855 8888
Q ss_pred EEEEeCC------CeEEEEECCCCcEEEEe----------------ccCCCeeEEEEcCCCcEEEEEc------CC--e-
Q 036953 153 LASGSLD------HEVRLWDANTSECIGSC----------------DFYRPIASIAFHAEGELLAVAS------GH--K- 201 (792)
Q Consensus 153 LaSgS~D------gtVrLWDl~tg~~v~t~----------------~h~s~V~sVafSpdG~~LasgS------dd--~- 201 (792)
+++--.+ ..|..+|.. |+.+..+ ..+..+.+++++|+|+.|+++. ++ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887777 788888876 5544333 2345688999999999666553 11 1
Q ss_pred ------EEEEEC--CCCC-cccCCeEEec------CCCCeEEEEEccCCCeEEE
Q 036953 202 ------LYIWPY--NNKE-EASSPIIVLK------TRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 202 ------V~IWDl--rt~~-~~~~~~~~~~------h~~sVtsVafSPdG~~Lla 240 (792)
++|+.+ .+.. .......... ....|..+.+-++++.++.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 444444 4312 1110111111 3567889999999995543
No 399
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=82.55 E-value=1.4e+02 Score=37.28 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=94.6
Q ss_pred CCCCeEEEEEc---C--C--CCEEEEEECCCeEEEEEC------CC---------CcEEEEecC---CCCCcEEEEEccC
Q 036953 94 PPRSTIAAAFS---P--D--GRTLASTHGDHTVKIIDC------QT---------GNCLKVLSG---HRRTPWVVRFHPL 148 (792)
Q Consensus 94 H~~~V~sLafS---P--D--G~~LaSGS~DGtVrIWDl------~t---------gk~v~~L~g---H~~~VtsVafSP~ 148 (792)
-..+|..++|. . + .++|++ -....+.|+.. .. ..++..+.. -..+..+++|+|.
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 45678889988 2 2 234444 44456677761 11 122333431 1236778999998
Q ss_pred CCCEEEEEeCCCeEEEEECCCC----cEEEEe--cc----------CCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCc
Q 036953 149 RSEILASGSLDHEVRLWDANTS----ECIGSC--DF----------YRPIASIAFHAEGELLAVASGHKLYIWPYNNKEE 212 (792)
Q Consensus 149 dg~lLaSgS~DgtVrLWDl~tg----~~v~t~--~h----------~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~ 212 (792)
+...||.....|...+||+... ...... .. .+.-..+.|..+-+.|++++..++.++|++....
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQ 236 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCCceEEEECCCCCc
Confidence 8889999999999999999211 111111 11 1233478899888899999888899999987765
Q ss_pred ccCCeEEecCCCCeEEEEEccC--CCeEEEEEe
Q 036953 213 ASSPIIVLKTRRSLRAVHFHPH--AAPFVLTAE 243 (792)
Q Consensus 213 ~~~~~~~~~h~~sVtsVafSPd--G~~LlaS~s 243 (792)
.. ..........|..+.-+|. +..++.|..
T Consensus 237 ~~-~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~ 268 (765)
T PF10214_consen 237 TE-YLVTAKTWSWILDVKRSPDNPSHVFILTSK 268 (765)
T ss_pred cc-hhccCCChhheeeEEecCCccceEEEEecC
Confidence 32 1233445678999999988 444444444
No 400
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=82.28 E-value=24 Score=43.96 Aligned_cols=108 Identities=14% Similarity=0.057 Sum_probs=71.7
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCC--------cEEEEEcc---------------CCCCEEEEEeCCCeE
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRT--------PWVVRFHP---------------LRSEILASGSLDHEV 162 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~--------VtsVafSP---------------~dg~lLaSgS~DgtV 162 (792)
.+..++.++.++.|.-.|..+|+.+.++...... .+++.+.. ..+..++.++.|+.+
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 4667888888899999999999999888633211 22344421 123478888899999
Q ss_pred EEEECCCCcEEEEeccCCCee-------------EEEEcC--CCcEEEEEc-----------CCeEEEEECCCCCcc
Q 036953 163 RLWDANTSECIGSCDFYRPIA-------------SIAFHA--EGELLAVAS-----------GHKLYIWPYNNKEEA 213 (792)
Q Consensus 163 rLWDl~tg~~v~t~~h~s~V~-------------sVafSp--dG~~LasgS-----------dd~V~IWDlrt~~~~ 213 (792)
.-.|.++|+.+..+..++.+. .+.-.| .+..+++++ ++.|+-+|.++++..
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999998876544331 111112 133455553 244999999998854
No 401
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=82.11 E-value=8.8 Score=44.28 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=58.0
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEcc---CCC-----------------C
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP---LRS-----------------E 151 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP---~dg-----------------~ 151 (792)
......+.++..+|++++.++...-|.|.|+|+.++..++.++|-.+.= +.|-. ... -
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq--c~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ--CGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce--EEEEEeecccccccccccccCCCCcceEE
Confidence 3445668999999999998888888999999999998888887765432 12211 011 1
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 152 ILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 152 lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
+++-.-.-|.|.+|++++|..+..+
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEE
Confidence 2334556778888888887766655
No 402
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=80.89 E-value=33 Score=33.67 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=70.5
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCC--------cEEEEecCCCCCcEEEEEcc----CCCCEEEEEeCCCeEEEEECC
Q 036953 101 AAFSPDGRTLASTHGDHTVKIIDCQTG--------NCLKVLSGHRRTPWVVRFHP----LRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 101 LafSPDG~~LaSGS~DGtVrIWDl~tg--------k~v~~L~gH~~~VtsVafSP----~dg~lLaSgS~DgtVrLWDl~ 168 (792)
-+|......|+.++.-++|.|++.... ..+..|. -...|++++-.+ ++.+.|+.|+ ...+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 355555556777778888888876532 2333443 445677765443 2355666665 5579999999
Q ss_pred CCcEEEEeccCCCeeEEEEcC----CCcEEEEEcCCeEEEEECCCCC
Q 036953 169 TSECIGSCDFYRPIASIAFHA----EGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 169 tg~~v~t~~h~s~V~sVafSp----dG~~LasgSdd~V~IWDlrt~~ 211 (792)
+..-+...+..+.++++.+-. +..++++|++..|.-||....+
T Consensus 82 ~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 82 NNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 877665556678888887742 3456777766668888865544
No 403
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=80.75 E-value=85 Score=36.08 Aligned_cols=101 Identities=17% Similarity=0.241 Sum_probs=61.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCC-CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH-RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH-~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
.+.+..|++||+++++|.-..+|.+.|.+.+-.+....+.-. ......+.|.- ++..++.- ...+.+.......
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG-~dav~l~~--~~~l~lvg~~~~~-- 290 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG-NDAVVLSW--EDELLLVGPDGDS-- 290 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC-CCcEEEEe--CCEEEEECCCCCc--
Confidence 457999999999999999999999999887666666555533 34566777875 33333322 3344444422211
Q ss_pred EEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCC
Q 036953 174 GSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 174 ~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~ 211 (792)
+.|.-++..++..--|+|+|..-...+
T Consensus 291 -----------~~~~~~~~~~l~~E~DG~riit~~~~~ 317 (410)
T PF04841_consen 291 -----------ISFWYDGPVILVSEIDGVRIITSTSHE 317 (410)
T ss_pred -----------eEEeccCceEEeccCCceEEEeCCceE
Confidence 233334444444444558887654443
No 404
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=79.50 E-value=1.2e+02 Score=35.60 Aligned_cols=104 Identities=12% Similarity=0.173 Sum_probs=59.8
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE--EEEec-----CCCCCcEEEEEccCCC------CEE-EEEeC---
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC--LKVLS-----GHRRTPWVVRFHPLRS------EIL-ASGSL--- 158 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~--v~~L~-----gH~~~VtsVafSP~dg------~lL-aSgS~--- 158 (792)
.....|+|.|||+.|++--..|.|++++..++.. +..+. .-.+...+|+++| +- .+| ++-+.
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~P-dF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHP-DFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECC-CccccCCCcEEEEEEeccCC
Confidence 3477899999998777655569999998655432 21111 1256788999998 42 233 33211
Q ss_pred ------CCeEEEEECCCC-----cEEEEec-----cCCCeeEEEEcCCCcEEEEEcCC
Q 036953 159 ------DHEVRLWDANTS-----ECIGSCD-----FYRPIASIAFHAEGELLAVASGH 200 (792)
Q Consensus 159 ------DgtVrLWDl~tg-----~~v~t~~-----h~s~V~sVafSpdG~~LasgSdd 200 (792)
...|.-|.+... .....+. ....-..|.|.|||+++++.++.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 233444554321 1111121 12234578899999877766654
No 405
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=79.00 E-value=5 Score=31.70 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=27.4
Q ss_pred CCcEEEEEccCCC--CEEEEEeCCCeEEEEECCC
Q 036953 138 RTPWVVRFHPLRS--EILASGSLDHEVRLWDANT 169 (792)
Q Consensus 138 ~~VtsVafSP~dg--~lLaSgS~DgtVrLWDl~t 169 (792)
+.|.++.|+|... ++|+-.-.-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998555 6899888889999999995
No 406
>PRK13684 Ycf48-like protein; Provisional
Probab=78.79 E-value=1.1e+02 Score=33.94 Aligned_cols=140 Identities=14% Similarity=0.111 Sum_probs=76.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEE-EECCCCcEEEEe-cCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKI-IDCQTGNCLKVL-SGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC 172 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrI-WDl~tgk~v~~L-~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~ 172 (792)
...+.++.+.+++..++++ ..|.+.. +| ..++.-..+ ..-...++++.+.+ ++..++. +..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~v-g~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQP-DGNLWML-ARGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcC-CCCCeEEEeeCCCcccceeeeEcC-CCCEEEE-ecCCEEEEccCCCCCc
Confidence 4568899999988766554 4554432 22 222222222 23456789999998 7766655 4567665433344433
Q ss_pred EEEec-----cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 173 IGSCD-----FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 173 v~t~~-----h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
-.... ....+.++.+.+++..++++.++.|. .....++..........-....+.+.|..+++.++
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV 318 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence 22221 12357789999988888777766443 34444433221000011123577788776666443
No 407
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=78.59 E-value=51 Score=39.21 Aligned_cols=55 Identities=15% Similarity=0.134 Sum_probs=36.2
Q ss_pred CeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCccc
Q 036953 160 HEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 160 gtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
+.|.-||+.+++.++.+....+...-...-.+.+++.+. ++.++.+|.++++.+.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 458889999999888775443321111122445666666 6669999999998654
No 408
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=78.05 E-value=1.2e+02 Score=33.71 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=57.0
Q ss_pred ecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE-EEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEEC-CCC
Q 036953 133 LSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC-IGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPY-NNK 210 (792)
Q Consensus 133 L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~-v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDl-rt~ 210 (792)
...-.+.+..+.-++ ++++++.+..-..+.-||--...- .........|..+.|.+++.+.+++.++.|+.=+. ...
T Consensus 140 ~~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 140 VSETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG 218 (302)
T ss_dssp E-S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE
T ss_pred ccCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc
Confidence 344567788888888 888888876666667888654322 22223568899999999999888776666777762 222
Q ss_pred CcccCCeEEe-cCCCCeEEEEEccCCCeEEEEE
Q 036953 211 EEASSPIIVL-KTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 211 ~~~~~~~~~~-~h~~sVtsVafSPdG~~LlaS~ 242 (792)
+....+.... .....+..++|.+++...++++
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg 251 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG 251 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEES
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeC
Confidence 2111111111 1234588999999877544433
No 409
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=77.04 E-value=15 Score=41.28 Aligned_cols=79 Identities=16% Similarity=0.088 Sum_probs=51.4
Q ss_pred EEEEEcCCCCEEEEEE--------CCC--eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEEC
Q 036953 99 IAAAFSPDGRTLASTH--------GDH--TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRLWDA 167 (792)
Q Consensus 99 ~sLafSPDG~~LaSGS--------~DG--tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrLWDl 167 (792)
.-+++++..++|++-- .|+ .|-++|+.+++.+..+.. ...+.+|..+.++..+|+..+ .++.+.+||.
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 3456666455554431 122 466779999999988873 345789999985555776554 5899999999
Q ss_pred CCCcEEEEecc
Q 036953 168 NTSECIGSCDF 178 (792)
Q Consensus 168 ~tg~~v~t~~h 178 (792)
.+++.+.++..
T Consensus 320 ~tGk~~~~~~~ 330 (342)
T PF06433_consen 320 ATGKLVRSIEQ 330 (342)
T ss_dssp TT--EEEEE--
T ss_pred cCCcEEeehhc
Confidence 99999988854
No 410
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=75.71 E-value=58 Score=38.51 Aligned_cols=137 Identities=14% Similarity=0.165 Sum_probs=84.2
Q ss_pred EcCCCCEEE-EEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccC-------CCCEEEEEeCCCeEEEEECCC-CcEE
Q 036953 103 FSPDGRTLA-STHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPL-------RSEILASGSLDHEVRLWDANT-SECI 173 (792)
Q Consensus 103 fSPDG~~La-SGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~-------dg~lLaSgS~DgtVrLWDl~t-g~~v 173 (792)
...|.+.|+ .|..-..++-.|+..|+.+....-|..- -+.|.|. +.+.|+ |-.|..|.-.|.+- |.-+
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCce
Confidence 333555554 4455567777899999988887766553 5777772 123343 44466666667664 3333
Q ss_pred EEeccCCCeeEEEEcC----CCcEEEEEcCCe-EEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEeeC
Q 036953 174 GSCDFYRPIASIAFHA----EGELLAVASGHK-LYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAEVN 245 (792)
Q Consensus 174 ~t~~h~s~V~sVafSp----dG~~LasgSdd~-V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s~~ 245 (792)
........++.-.|+. ..-++++++..+ |++||--..... ..+.+-...|..+..+.+|++++++|..+
T Consensus 552 ~v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAK---talP~lG~aIk~idvta~Gk~ilaTCk~y 625 (776)
T COG5167 552 KVVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAK---TALPGLGDAIKHIDVTANGKHILATCKNY 625 (776)
T ss_pred eeeeehhccccccccccccccCceEEEecCCCceeeehhhcchhh---hcCcccccceeeeEeecCCcEEEEeecce
Confidence 3333333333333332 345788888544 999996433321 23344567899999999999999999843
No 411
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.84 E-value=1.4e+02 Score=33.09 Aligned_cols=161 Identities=13% Similarity=0.180 Sum_probs=90.3
Q ss_pred eeCCCCceeeeEEeeCCCceEeecCCCceeecCCcEEEEEeCCCe-EEEEeccCCCcCCCCCCeEEEEEcCCCCEEEEEE
Q 036953 36 EISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAKRGLVSWVEAES-LRHLSAKYCPLVPPPRSTIAAAFSPDGRTLASTH 114 (792)
Q Consensus 36 els~~tk~V~s~aWspd~~lla~G~~a~sv~d~~~~L~S~s~d~s-IrvWd~~t~~L~gH~~~V~sLafSPDG~~LaSGS 114 (792)
++...+.-+..+.|+|+.+.+ +++-+..-.++-....+. |+.. ++.+- .....+.+.-++++.++--
T Consensus 80 pi~g~~~nvS~LTynp~~rtL------Fav~n~p~~iVElt~~Gdlirti-----PL~g~-~DpE~Ieyig~n~fvi~dE 147 (316)
T COG3204 80 PILGETANVSSLTYNPDTRTL------FAVTNKPAAIVELTKEGDLIRTI-----PLTGF-SDPETIEYIGGNQFVIVDE 147 (316)
T ss_pred ccccccccccceeeCCCcceE------EEecCCCceEEEEecCCceEEEe-----ccccc-CChhHeEEecCCEEEEEeh
Confidence 344445568888999997653 223344445555554443 3322 23332 2244667776777777767
Q ss_pred CCCeEEEEECCCCcEEEE-------ec--CC-CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc-EEEE---ec---
Q 036953 115 GDHTVKIIDCQTGNCLKV-------LS--GH-RRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE-CIGS---CD--- 177 (792)
Q Consensus 115 ~DGtVrIWDl~tgk~v~~-------L~--gH-~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~-~v~t---~~--- 177 (792)
.+..+.++.+.....+.. +. .+ +...-+++|.| ..+.|..+-+-+=+.||.+.... .+.. ..
T Consensus 148 R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~ 226 (316)
T COG3204 148 RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTA 226 (316)
T ss_pred hcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccccccccCccc
Confidence 788888887765432211 11 12 56778899999 66666666666666776665332 1110 01
Q ss_pred ----cCCCeeEEEEcCCCcEEEEEc-CCe-EEEEECCC
Q 036953 178 ----FYRPIASIAFHAEGELLAVAS-GHK-LYIWPYNN 209 (792)
Q Consensus 178 ----h~s~V~sVafSpdG~~LasgS-dd~-V~IWDlrt 209 (792)
.-..+.++.|++....|.+-| ..+ |.-.|...
T Consensus 227 ~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 227 DRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 123467788887655554444 333 66666543
No 412
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=73.76 E-value=56 Score=38.07 Aligned_cols=174 Identities=15% Similarity=0.204 Sum_probs=81.0
Q ss_pred CcEEEEEe-CCCeEEEEeccCCCcCC-----------CC----CCeEEEEEcCCCCEEEEEEC------CCeEEEEECCC
Q 036953 69 KRGLVSWV-EAESLRHLSAKYCPLVP-----------PP----RSTIAAAFSPDGRTLASTHG------DHTVKIIDCQT 126 (792)
Q Consensus 69 ~~~L~S~s-~d~sIrvWd~~t~~L~g-----------H~----~~V~sLafSPDG~~LaSGS~------DGtVrIWDl~t 126 (792)
+..|+.-. ....|.++|..+..... +. .....+..-|+|+.++|+=. -|-+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 44555544 56678888876442110 11 11234445578988887632 25678888887
Q ss_pred CcEEEEecCC---CCCcEEEEEccCCCCEEEEEeC--------------------CCeEEEEECCCCcEEEEeccCC---
Q 036953 127 GNCLKVLSGH---RRTPWVVRFHPLRSEILASGSL--------------------DHEVRLWDANTSECIGSCDFYR--- 180 (792)
Q Consensus 127 gk~v~~L~gH---~~~VtsVafSP~dg~lLaSgS~--------------------DgtVrLWDl~tg~~v~t~~h~s--- 180 (792)
.+........ ...-..+-|.| ..+.++|... -.++.+||+.+.+.++++....
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp --EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred ccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 7766655432 33456788888 7788888642 2679999999999999986442
Q ss_pred CeeEEEE--cCCCcEEEEEc--CCeEEEEEC-CCCCcccCCeEEecC------------------CCCeEEEEEccCCCe
Q 036953 181 PIASIAF--HAEGELLAVAS--GHKLYIWPY-NNKEEASSPIIVLKT------------------RRSLRAVHFHPHAAP 237 (792)
Q Consensus 181 ~V~sVaf--SpdG~~LasgS--dd~V~IWDl-rt~~~~~~~~~~~~h------------------~~sVtsVafSPdG~~ 237 (792)
....+.| .|+..+=++++ ...|..|-- ..++-..+....... ..-|+.+..|.|.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 3445555 45565544444 444544433 333211100111100 234789999999999
Q ss_pred EEEEEe
Q 036953 238 FVLTAE 243 (792)
Q Consensus 238 LlaS~s 243 (792)
|.+++-
T Consensus 326 LYvs~W 331 (461)
T PF05694_consen 326 LYVSNW 331 (461)
T ss_dssp EEEEET
T ss_pred EEEEcc
Confidence 998886
No 413
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=72.95 E-value=1.3e+02 Score=38.35 Aligned_cols=139 Identities=16% Similarity=0.263 Sum_probs=86.3
Q ss_pred CeEEEEEcCC-CCEEEEEEC----------CCeEEEEECCCCcEEEEecC--CCCCcEEEEEccCCCCEEEEEeCCCeEE
Q 036953 97 STIAAAFSPD-GRTLASTHG----------DHTVKIIDCQTGNCLKVLSG--HRRTPWVVRFHPLRSEILASGSLDHEVR 163 (792)
Q Consensus 97 ~V~sLafSPD-G~~LaSGS~----------DGtVrIWDl~tgk~v~~L~g--H~~~VtsVafSP~dg~lLaSgS~DgtVr 163 (792)
.+.++.|..| +.++++|.. .|.|.||....++.+..... -++.|.++..- +++++| +-...|+
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA--~In~~vr 851 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLA--GINQSVR 851 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEE--ecCcEEE
Confidence 3566668876 677777753 47788887776444443332 23555555543 466665 4567899
Q ss_pred EEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 164 LWDANTSECIGSC-DFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 164 LWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
+|++.+++.++.- .+..++..+...-.|..+++|. -..+.+...+..+-.-......-+..+.+++.+--+..++.
T Consensus 852 Lye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylg 929 (1096)
T KOG1897|consen 852 LYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLG 929 (1096)
T ss_pred EEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEe
Confidence 9999888555443 4677888888888899999987 44455555444331110112223567778887766555443
No 414
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=72.60 E-value=30 Score=41.15 Aligned_cols=74 Identities=16% Similarity=0.117 Sum_probs=49.7
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCee--EEEEcCCCc
Q 036953 117 HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIA--SIAFHAEGE 192 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~--sVafSpdG~ 192 (792)
+.+.-+|+.+++.+..++.......+.... .+.+++.++.|+.++.+|.++|+.+..+.....+. -+.|.-+|+
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~ 516 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGK 516 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCE
Confidence 457778999999888776332222222222 45678888889999999999999999886544333 234445664
No 415
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=72.13 E-value=1.9e+02 Score=33.31 Aligned_cols=137 Identities=14% Similarity=0.051 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE--EEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCc----
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL--KVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSE---- 171 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v--~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~---- 171 (792)
...+..++|+..++.+..-..++-||- ++.. ..-......+..+.|.+ ++.+++.+ .+|.+. |....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcccc
Confidence 445667778877776654433333442 3221 11123345688999988 77666554 566643 3344443
Q ss_pred -EEEEecc---CCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 172 -CIGSCDF---YRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 172 -~v~t~~h---~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
....... ...+.++.|.+++..+++|..+.+... ...++..........-...++.+.|.++++-+++
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~ 387 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL 387 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEE
Confidence 1222222 235889999999998888887644444 3344322100001122456889999877664443
No 416
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.14 E-value=1.2e+02 Score=39.20 Aligned_cols=120 Identities=14% Similarity=0.167 Sum_probs=79.0
Q ss_pred eCCCeEEEEeccCC---------CcCCC------CCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCc-EEEEecCCCC
Q 036953 76 VEAESLRHLSAKYC---------PLVPP------PRSTIAAAFSPD-GRTLASTHGDHTVKIIDCQTGN-CLKVLSGHRR 138 (792)
Q Consensus 76 s~d~sIrvWd~~t~---------~L~gH------~~~V~sLafSPD-G~~LaSGS~DGtVrIWDl~tgk-~v~~L~gH~~ 138 (792)
..+..|..+|+++- .|..| ..-..++.|+|. ....+.+..|+.|++..+.... .+..+ .-..
T Consensus 121 sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~ 199 (1405)
T KOG3630|consen 121 SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTN 199 (1405)
T ss_pred cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-Cccc
Confidence 34556777777522 12222 233568889983 2345667788888888765332 22222 2556
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe-----ccCCCeeEEEEcCCCcEEEEEc
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC-----DFYRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~-----~h~s~V~sVafSpdG~~LasgS 198 (792)
.+++++|+| .++.++.|-..|++.-|... .+....+ .....|.+|+|-....++++-+
T Consensus 200 ~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 200 SQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ceeeEEecc-ccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 789999999 99999999999999988653 2322222 1246799999988887777643
No 417
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=70.23 E-value=42 Score=39.60 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=48.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCC
Q 036953 149 RSEILASGSLDHEVRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASGHKLYIWPYNN 209 (792)
Q Consensus 149 dg~lLaSgS~DgtVrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt 209 (792)
...+++.++..|.|++||--..+....+ .....|..+..+.+|+++++.+...|.+-|++-
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 4679999999999999996544333333 466789999999999999988888888888854
No 418
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=69.70 E-value=15 Score=43.30 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=45.7
Q ss_pred CCCCEEEEEECCCeEEEEECCC----CcEEEE--ecCC--------------------CCCcEEEEEcc---CCCCEEEE
Q 036953 105 PDGRTLASTHGDHTVKIIDCQT----GNCLKV--LSGH--------------------RRTPWVVRFHP---LRSEILAS 155 (792)
Q Consensus 105 PDG~~LaSGS~DGtVrIWDl~t----gk~v~~--L~gH--------------------~~~VtsVafSP---~dg~lLaS 155 (792)
.+...|+.+..||.+....... +..... +..+ ...+..+.++. .+..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3677888888999888777653 221111 1111 12344455544 25689999
Q ss_pred EeCCCeEEEEECCCCcEEEEec
Q 036953 156 GSLDHEVRLWDANTSECIGSCD 177 (792)
Q Consensus 156 gS~DgtVrLWDl~tg~~v~t~~ 177 (792)
.+.|+++|+||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999987764
No 419
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.57 E-value=96 Score=38.27 Aligned_cols=52 Identities=10% Similarity=0.264 Sum_probs=38.2
Q ss_pred CCeEEEEECCCCcEEEEecc-CCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCC
Q 036953 159 DHEVRLWDANTSECIGSCDF-YRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 159 DgtVrLWDl~tg~~v~t~~h-~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~ 211 (792)
--.|+++++ +|+.+..+-. ...+..+.|+.+..+|++.-++.+++|++....
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ 115 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEF 115 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhh
Confidence 345778876 4555555432 237889999999999998888899999985543
No 420
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=68.56 E-value=0.91 Score=52.41 Aligned_cols=142 Identities=13% Similarity=0.141 Sum_probs=94.4
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEE
Q 036953 94 PPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 94 H~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v 173 (792)
+-.......|-+.+.-++.++.+..+..||- .++....+. -.+..-.++|..+.+..++.+-..+.+.+||+.+....
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 3344556678887777999999989999994 344333333 34556678888744455566677889999999864321
Q ss_pred -EEeccCCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEE
Q 036953 174 -GSCDFYRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 174 -~t~~h~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Lla 240 (792)
..+.....-.=+.|++.+..++.+. .+.+.|++..+.+... ..-+|...+++++|.+.+..++.
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccceeeec
Confidence 1112222222277888888888887 4559999998877432 23338889999999998774443
No 421
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=67.42 E-value=1.1e+02 Score=32.31 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=66.5
Q ss_pred CEEEEEECCCeEEEEECCC--CcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCC------eEEEE---ECC--CCcEEE
Q 036953 108 RTLASTHGDHTVKIIDCQT--GNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH------EVRLW---DAN--TSECIG 174 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~t--gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg------tVrLW---Dl~--tg~~v~ 174 (792)
..|+.+...+.|.+|++.. .+....|. --+.|..+.++. .|++++|--.+. .+|+| ... ..+++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 4454446667899999883 34566665 347899999998 899999875432 45654 322 112222
Q ss_pred --E---------------------eccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCC
Q 036953 175 --S---------------------CDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 175 --t---------------------~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~ 211 (792)
. +....++.+++-.|-.--|++|+++++.||.++...
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQT 166 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEE
Confidence 1 122345667887887666777888889999886554
No 422
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=66.67 E-value=1.1e+02 Score=34.22 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=70.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECC------CC-cEEEEecC-----CCCCcEEEEEccCCC------------CE
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQ------TG-NCLKVLSG-----HRRTPWVVRFHPLRS------------EI 152 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~------tg-k~v~~L~g-----H~~~VtsVafSP~dg------------~l 152 (792)
.-+.|+++|.+...++...-+...+||.. .. ..+..+.. -....+.+.|+. .. ..
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCccccee
Confidence 46789999999888888888899999986 12 23334432 235688899885 22 23
Q ss_pred EEEEeCCCeEEEEECCCCcE-----EEEecc--CCCe-eEEEEcC--CCcEEEEEc--CCeEEEEECCC
Q 036953 153 LASGSLDHEVRLWDANTSEC-----IGSCDF--YRPI-ASIAFHA--EGELLAVAS--GHKLYIWPYNN 209 (792)
Q Consensus 153 LaSgS~DgtVrLWDl~tg~~-----v~t~~h--~s~V-~sVafSp--dG~~LasgS--dd~V~IWDlrt 209 (792)
++.+++||+|.-|...-... ...+.. ...| ..+++.. .+.+|+.+. .++|.+||-.-
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f 171 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF 171 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc
Confidence 67789999999998543221 122221 1222 3455443 356666665 45588887543
No 423
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=66.23 E-value=63 Score=36.19 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=71.0
Q ss_pred EEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcC-
Q 036953 121 IIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASG- 199 (792)
Q Consensus 121 IWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSd- 199 (792)
++|+.+++.+. .+.. ...+.+|+ ++++.++-+..|+|.-+|..+|+........+....++|. |.+++++.+
T Consensus 189 vidv~s~evl~--~GLs-mPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmSk 261 (335)
T TIGR03032 189 VIDIPSGEVVA--SGLS-MPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLSK 261 (335)
T ss_pred EEEeCCCCEEE--cCcc-CCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEecc
Confidence 46776665442 2221 23345777 5889999999999999999988776666666788889988 888777631
Q ss_pred --------------------CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCC
Q 036953 200 --------------------HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 200 --------------------d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG 235 (792)
.+|.+.|++++.... -..+.+.-..+++|+.-|.=
T Consensus 262 ~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~-~l~feg~v~EifdV~vLPg~ 316 (335)
T TIGR03032 262 LRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVH-WLRFEGVIEEIYDVAVLPGV 316 (335)
T ss_pred ccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEE-EEEeCCceeEEEEEEEecCC
Confidence 137777887777543 22233345567777776653
No 424
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=65.51 E-value=3.5e+02 Score=33.75 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=51.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECC----------CCcE--E-EEe--------cCCCCCcEEEEEccC--CCCE
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQ----------TGNC--L-KVL--------SGHRRTPWVVRFHPL--RSEI 152 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~----------tgk~--v-~~L--------~gH~~~VtsVafSP~--dg~l 152 (792)
-.|..+.+|++|++|+..+..+. .|-.+. .++. . +.+ ..+...|..+.|||. ++..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 35899999999999999888764 443332 1111 1 111 134567889999993 3577
Q ss_pred EEEEeCCCeEEEEECCCC
Q 036953 153 LASGSLDHEVRLWDANTS 170 (792)
Q Consensus 153 LaSgS~DgtVrLWDl~tg 170 (792)
|+.-..|+++|+||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888889999999999763
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=65.21 E-value=22 Score=28.15 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=25.1
Q ss_pred CCeEEEEEcC-CC--CEEEEEECCCeEEEEECCC
Q 036953 96 RSTIAAAFSP-DG--RTLASTHGDHTVKIIDCQT 126 (792)
Q Consensus 96 ~~V~sLafSP-DG--~~LaSGS~DGtVrIWDl~t 126 (792)
+.|.+++||| .+ ..|+.+-..+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998 44 5777777778999999985
No 426
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=64.76 E-value=99 Score=38.57 Aligned_cols=111 Identities=13% Similarity=0.129 Sum_probs=73.2
Q ss_pred CeEEEEEcC-CCCEEEEEECCCeEEEEECCCCc-----EEEEecCCCCCc----------EEEEEccCCCCEEEEEeCCC
Q 036953 97 STIAAAFSP-DGRTLASTHGDHTVKIIDCQTGN-----CLKVLSGHRRTP----------WVVRFHPLRSEILASGSLDH 160 (792)
Q Consensus 97 ~V~sLafSP-DG~~LaSGS~DGtVrIWDl~tgk-----~v~~L~gH~~~V----------tsVafSP~dg~lLaSgS~Dg 160 (792)
+...++|+| +.+.||.-...|...|||+.... .......+.+.| ..+.|.+ +.+.|+.++ ..
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~-r~ 224 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN-RS 224 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-CC
Confidence 456899999 77799999999999999992111 111111222333 3688987 666777765 44
Q ss_pred eEEEEECCCCcEEE---EeccCCCeeEEEEcCC--CcEEEEEcCCeEEEEECCCC
Q 036953 161 EVRLWDANTSECIG---SCDFYRPIASIAFHAE--GELLAVASGHKLYIWPYNNK 210 (792)
Q Consensus 161 tVrLWDl~tg~~v~---t~~h~s~V~sVafSpd--G~~LasgSdd~V~IWDlrt~ 210 (792)
.+.++|+++..... .......|.++.-++. +..|+..+ ..|...|+...
T Consensus 225 ~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~~ 278 (765)
T PF10214_consen 225 KLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKSS 278 (765)
T ss_pred ceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccCC
Confidence 68999998876533 2234567888888887 34444433 45888888764
No 427
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=64.45 E-value=80 Score=35.08 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=56.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE---EEEe----cCCCCCcEEEEEccC---CCCEEEEEeCC-------
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDCQTGNC---LKVL----SGHRRTPWVVRFHPL---RSEILASGSLD------- 159 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~---v~~L----~gH~~~VtsVafSP~---dg~lLaSgS~D------- 159 (792)
..+.|+|.|||+.|++ ...|.|++++ ..+.. +..+ ........+++++|+ ++.+.+.-+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3678999999876664 6699999999 44443 2222 123456789999992 24444444422
Q ss_pred -CeEEEEECCCC-------cEEE-Eec----cCCCeeEEEEcCCCcEEEEEcC
Q 036953 160 -HEVRLWDANTS-------ECIG-SCD----FYRPIASIAFHAEGELLAVASG 199 (792)
Q Consensus 160 -gtVrLWDl~tg-------~~v~-t~~----h~s~V~sVafSpdG~~LasgSd 199 (792)
..|.-|.+..+ +.+. .+. .......|.|.|||.+.++.++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 23444444333 1111 111 2345677999999976666553
No 428
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.00 E-value=92 Score=36.48 Aligned_cols=104 Identities=11% Similarity=0.125 Sum_probs=71.3
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEe----ccC-CCeeEEEEcCCCcEEEEEcCCeEEEEECCCC
Q 036953 136 HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSC----DFY-RPIASIAFHAEGELLAVASGHKLYIWPYNNK 210 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~----~h~-s~V~sVafSpdG~~LasgSdd~V~IWDlrt~ 210 (792)
.+++|.++.|++ |.+.++.--.|++|.+++....+....+ ..+ ..|....|+.. .-+|.-.+.++.+|-+...
T Consensus 65 d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPE 142 (657)
T ss_pred CCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchh
Confidence 567999999999 9999999999999999998544433332 222 34788888766 5566666556777766444
Q ss_pred CcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 211 EEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 211 ~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+.. ......+.-.|+-..|.++-+.++.+.+
T Consensus 143 krs--lRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 143 KRS--LRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhh--hhhhhhcccCccEEEEccccceEeeecc
Confidence 321 1233446667778888888876666555
No 429
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=63.67 E-value=33 Score=25.36 Aligned_cols=40 Identities=33% Similarity=0.514 Sum_probs=27.9
Q ss_pred CCCCEEEEEE-CCCeEEEEECCCCcEEEEecCCCCCcEEEEE
Q 036953 105 PDGRTLASTH-GDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF 145 (792)
Q Consensus 105 PDG~~LaSGS-~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf 145 (792)
|++++|+++. .+++|.++|..+++.+..+.- ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5677776655 578999999998888877764 333344544
No 430
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=63.59 E-value=1.2e+02 Score=30.03 Aligned_cols=85 Identities=13% Similarity=0.155 Sum_probs=57.0
Q ss_pred EEEccCCCCEEEEEeCCCeEEEEECCCC--------cEEEEeccCCCeeEEEEcC-----CCcEEEEEcCCeEEEEECCC
Q 036953 143 VRFHPLRSEILASGSLDHEVRLWDANTS--------ECIGSCDFYRPIASIAFHA-----EGELLAVASGHKLYIWPYNN 209 (792)
Q Consensus 143 VafSP~dg~lLaSgS~DgtVrLWDl~tg--------~~v~t~~h~s~V~sVafSp-----dG~~LasgSdd~V~IWDlrt 209 (792)
-+|.. ....|+.++.-++|.+.+.... ..+..+.....|++++-.+ +...|+.|+...|..||+..
T Consensus 4 GkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~ 82 (136)
T PF14781_consen 4 GKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVEN 82 (136)
T ss_pred EEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEccc
Confidence 34554 3346777778888999887633 3556667777888876543 34689999988899999987
Q ss_pred CCcccCCeEEecCCCCeEEEEEc
Q 036953 210 KEEASSPIIVLKTRRSLRAVHFH 232 (792)
Q Consensus 210 ~~~~~~~~~~~~h~~sVtsVafS 232 (792)
..... ...-.+.|+++.+-
T Consensus 83 N~d~F----yke~~DGvn~i~~g 101 (136)
T PF14781_consen 83 NSDLF----YKEVPDGVNAIVIG 101 (136)
T ss_pred Cchhh----hhhCccceeEEEEE
Confidence 76432 23334556666663
No 431
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=62.18 E-value=2.5e+02 Score=32.17 Aligned_cols=176 Identities=11% Similarity=0.075 Sum_probs=91.0
Q ss_pred ceeecCCcEEEEEeCCCeEEEEecc--CC--CcC-----CC---CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Q 036953 63 SSVRDAKRGLVSWVEAESLRHLSAK--YC--PLV-----PP---PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCL 130 (792)
Q Consensus 63 ~sv~d~~~~L~S~s~d~sIrvWd~~--t~--~L~-----gH---~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v 130 (792)
..+.+++..+|++..++-+..-+.+ .+ ... .+ -+....++|...+..|+.+..---+..-+...++ .
T Consensus 70 ~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~-a 148 (376)
T KOG1520|consen 70 TGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGL-A 148 (376)
T ss_pred EEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEecceeeEEECCCCCc-c
Confidence 3345677778888877777666552 11 111 11 1446689999877667776543223333433333 1
Q ss_pred EEecCCC-----CCcEEEEEccCCCCEEEE-----------------EeCCCeEEEEECCCCcEEEEeccCCCeeEEEEc
Q 036953 131 KVLSGHR-----RTPWVVRFHPLRSEILAS-----------------GSLDHEVRLWDANTSECIGSCDFYRPIASIAFH 188 (792)
Q Consensus 131 ~~L~gH~-----~~VtsVafSP~dg~lLaS-----------------gS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafS 188 (792)
..+..+. ....++..++ ++.+.+| +..+|.+.-||..++.....++.-...+.++.+
T Consensus 149 ~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS 227 (376)
T KOG1520|consen 149 ELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALS 227 (376)
T ss_pred eeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhhhcccccccccCC
Confidence 1111111 1223344444 4433333 234455666666655443333444556789999
Q ss_pred CCCcEEEEEcCC--eEEEEECCCCCcccCCeE---EecCCCCeEEEEEccCCCeEEEEEe
Q 036953 189 AEGELLAVASGH--KLYIWPYNNKEEASSPII---VLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 189 pdG~~LasgSdd--~V~IWDlrt~~~~~~~~~---~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
||+.+++++-.. +|+-|=++..+....... ..+..+. +..+.+|.+.++...
T Consensus 228 ~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDN---IR~~~~G~fWVal~~ 284 (376)
T KOG1520|consen 228 PDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDN---IRRDSTGHFWVALHS 284 (376)
T ss_pred CCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcc---eeECCCCCEEEEEec
Confidence 999998888633 344443443332110111 1223344 456788987776543
No 432
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=62.12 E-value=26 Score=40.49 Aligned_cols=83 Identities=20% Similarity=0.279 Sum_probs=54.9
Q ss_pred EEEeccCcceeEEEeccccccceeEEEecCCc-ccceeEEEEEEEeCCceeEEeecCCCCceeeEEecccCCCc------
Q 036953 682 SIQFSPTSEHILLAYGRRHGSLLKSIVIDGET-TSPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGG------ 754 (792)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~g------ 754 (792)
+|.+||++++|.+|++.|-.-|--.+-.++.. .-..|.+.-.-.++|= ..+.|...++-|....+
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~--------~~e~ITsi~clpl~s~~~s~~~~ 77 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDE--------PGECITSILCLPLSSQKRSTGGP 77 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCC--------CCCEEEEEEEEEeecccccCCCC
Confidence 58899999999999999987443223222222 3334444433222221 11788999999996666
Q ss_pred ----eeEeeccceEEEEEecCC
Q 036953 755 ----LVYGTKEGKLRILQYDGV 772 (792)
Q Consensus 755 ----~~ygt~~g~~~~~~~~~~ 772 (792)
+|=||..|-||+.--+|.
T Consensus 78 dw~~I~VG~ssG~vrfyte~G~ 99 (415)
T PF14655_consen 78 DWTCIAVGTSSGYVRFYTENGV 99 (415)
T ss_pred CcEEEEEEecccEEEEEeccch
Confidence 788999999999876553
No 433
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=61.25 E-value=63 Score=34.27 Aligned_cols=28 Identities=29% Similarity=0.268 Sum_probs=17.5
Q ss_pred CCCEEEEEEC--CCeEEEEECCCCcEEEEe
Q 036953 106 DGRTLASTHG--DHTVKIIDCQTGNCLKVL 133 (792)
Q Consensus 106 DG~~LaSGS~--DGtVrIWDl~tgk~v~~L 133 (792)
+|..+.+.+. ...|++||+.+++.+..-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~ 84 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSE 84 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEe
Confidence 4555555543 346888888888766543
No 434
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=61.23 E-value=1.9e+02 Score=32.00 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=90.5
Q ss_pred CCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE
Q 036953 96 RSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS 175 (792)
Q Consensus 96 ~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t 175 (792)
.....++-+|||...+++...+.|--.|-.+|+....--+.......|..-| |+..-++-+.. -|.-.|-++.+....
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEe
Confidence 3467888899999999998888888889999987665556666777888889 66555553333 456666666543322
Q ss_pred e---c-cCCCeeEEEEcCCCcEEEEEcCC----------eEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 176 C---D-FYRPIASIAFHAEGELLAVASGH----------KLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 176 ~---~-h~s~V~sVafSpdG~~LasgSdd----------~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
- + .....+...|++.|++-+++..+ .|++|+.-.+. .-+.++-.|+|...+++
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~-------------gpyGi~atpdGsvwyas 206 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGG-------------GPYGICATPDGSVWYAS 206 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCCC-------------CCcceEECCCCcEEEEe
Confidence 1 2 34567888999999998887632 25666654332 24577889999865554
Q ss_pred E
Q 036953 242 A 242 (792)
Q Consensus 242 ~ 242 (792)
-
T Consensus 207 l 207 (353)
T COG4257 207 L 207 (353)
T ss_pred c
Confidence 3
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=61.07 E-value=47 Score=34.95 Aligned_cols=65 Identities=6% Similarity=0.039 Sum_probs=43.9
Q ss_pred CCCCEEEEEECCCeEEEEECCCCcEEEEe-------c-------CCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCC
Q 036953 105 PDGRTLASTHGDHTVKIIDCQTGNCLKVL-------S-------GHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTS 170 (792)
Q Consensus 105 PDG~~LaSGS~DGtVrIWDl~tgk~v~~L-------~-------gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg 170 (792)
.++++|++-..+|.+++||+.+++.+..- . .....|..+.++. +|.-+++-+ ++....||..-+
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccccc
Confidence 46888999999999999999988754221 1 2345666677775 666666554 456677766544
Q ss_pred c
Q 036953 171 E 171 (792)
Q Consensus 171 ~ 171 (792)
.
T Consensus 98 ~ 98 (219)
T PF07569_consen 98 C 98 (219)
T ss_pred e
Confidence 3
No 436
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=60.57 E-value=2.5e+02 Score=33.03 Aligned_cols=106 Identities=16% Similarity=0.160 Sum_probs=56.6
Q ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCC---CcEEEEEccCCCCEEEEEeC-------------CCeEEE
Q 036953 101 AAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR---TPWVVRFHPLRSEILASGSL-------------DHEVRL 164 (792)
Q Consensus 101 LafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~---~VtsVafSP~dg~lLaSgS~-------------DgtVrL 164 (792)
+.+.++|.+++... ..++.+|+. |+.++.+.--.+ .-..+.+-| ++++|+.+.. .-.|..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~~~D~Ive 228 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDTVEDVIVE 228 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE---S-EEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECC-CCCEEEEEeecccccCCCCccEecCEEEE
Confidence 66778888777655 678889975 666555442221 124467778 8888888772 123666
Q ss_pred EECCCCcEEEEec---cC-------------------------CCeeEEEEcCCCc-EEEEEcC-CeEEEEECCCCC
Q 036953 165 WDANTSECIGSCD---FY-------------------------RPIASIAFHAEGE-LLAVASG-HKLYIWPYNNKE 211 (792)
Q Consensus 165 WDl~tg~~v~t~~---h~-------------------------s~V~sVafSpdG~-~LasgSd-d~V~IWDlrt~~ 211 (792)
+| .+|+.++.+. +- -.++++.+.+... +|+++-. +.|...|.++++
T Consensus 229 vd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~ 304 (477)
T PF05935_consen 229 VD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGK 304 (477)
T ss_dssp E--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-
T ss_pred EC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCc
Confidence 67 7787777652 10 1378999998544 4444443 358888866665
No 437
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=59.81 E-value=4.3e+02 Score=33.24 Aligned_cols=145 Identities=13% Similarity=0.116 Sum_probs=80.2
Q ss_pred CcEEEEEeCCCeEEEEeccCCCcC---CCCCCe-------------EEEEEcC--CCCEEEEEEC----------CCeEE
Q 036953 69 KRGLVSWVEAESLRHLSAKYCPLV---PPPRST-------------IAAAFSP--DGRTLASTHG----------DHTVK 120 (792)
Q Consensus 69 ~~~L~S~s~d~sIrvWd~~t~~L~---gH~~~V-------------~sLafSP--DG~~LaSGS~----------DGtVr 120 (792)
+.+++....|+.+.-.|.++++.. +....| ..+.-.| .+..+++|+. +|.|+
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~ 339 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR 339 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence 346666667777777777766432 111111 1122223 2446666643 68899
Q ss_pred EEECCCCcEEEEecCC---------CC--------Cc-EEEEEccCCCCEEEEEe------------------CCCeEEE
Q 036953 121 IIDCQTGNCLKVLSGH---------RR--------TP-WVVRFHPLRSEILASGS------------------LDHEVRL 164 (792)
Q Consensus 121 IWDl~tgk~v~~L~gH---------~~--------~V-tsVafSP~dg~lLaSgS------------------~DgtVrL 164 (792)
-+|+.+|+.+..+..- .+ .+ ...++.+ +..+++... ..+.|.-
T Consensus 340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~-~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDE-KLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcC-CCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 9999999998887510 00 11 1234444 223333211 1245677
Q ss_pred EECCCCcEEEEecc-CC---------CeeEEEEcC-CCc---EEEEEc-CCeEEEEECCCCCccc
Q 036953 165 WDANTSECIGSCDF-YR---------PIASIAFHA-EGE---LLAVAS-GHKLYIWPYNNKEEAS 214 (792)
Q Consensus 165 WDl~tg~~v~t~~h-~s---------~V~sVafSp-dG~---~LasgS-dd~V~IWDlrt~~~~~ 214 (792)
.|+++|+..+.++. .. ...=+.+.. +|+ .++.+. ++.++++|-++++.+.
T Consensus 419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 78899998888742 11 111122322 553 566666 4559999999988543
No 438
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=57.88 E-value=2.9e+02 Score=32.50 Aligned_cols=55 Identities=13% Similarity=0.257 Sum_probs=38.5
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE--EEEe------ccCCCeeEEEEcCCC
Q 036953 136 HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC--IGSC------DFYRPIASIAFHAEG 191 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~--v~t~------~h~s~V~sVafSpdG 191 (792)
.-...+.|+|.| ++++|++--..|.|++++..++.. +..+ ........|+++|+-
T Consensus 28 GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344678999999 888777765579999998765432 2111 135678899999874
No 439
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=57.02 E-value=1.3e+02 Score=33.14 Aligned_cols=115 Identities=11% Similarity=0.164 Sum_probs=68.6
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe------CCCeEEEEECCCCcEEEEec-----cCCCeeEE
Q 036953 117 HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS------LDHEVRLWDANTSECIGSCD-----FYRPIASI 185 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS------~DgtVrLWDl~tg~~v~t~~-----h~s~V~sV 185 (792)
..|++||..+.+-...-.+-.+.|+.+.|.. +.++++.|. ....+..||..+......-. -.+++..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 3589999877654444445668899999986 667777764 34568889998765432222 23678887
Q ss_pred EEcC-CCcEEE-EEc--C--CeEEEEECCCCCcccCCeEEecCCCCeEEEEEccC
Q 036953 186 AFHA-EGELLA-VAS--G--HKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPH 234 (792)
Q Consensus 186 afSp-dG~~La-sgS--d--d~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPd 234 (792)
.+.. |+..+. .|. . .-|..||=.+..... .........|..+.+-|-
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~--~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG--SDILGSGTTIRGLQVLPL 147 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEecc--ccccCCCCEEEEEEEEec
Confidence 7743 343333 332 2 228888766555332 112223455666666543
No 440
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.08 E-value=3.6e+02 Score=33.59 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=53.8
Q ss_pred CeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE-Eec---cCCCeeEEEEcCCCc
Q 036953 117 HTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG-SCD---FYRPIASIAFHAEGE 192 (792)
Q Consensus 117 GtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~-t~~---h~s~V~sVafSpdG~ 192 (792)
-.|+||++ +|+.+..+.-..+.+-.+.|+. ...|+....||++++|++....... ..+ ....|..+.+..+|-
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~--~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSD--DEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccC--CceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCce
Confidence 45888886 4665555443344788899985 5667778899999999986432111 121 223344444444666
Q ss_pred EEEEEcCCeEEEEECCC
Q 036953 193 LLAVASGHKLYIWPYNN 209 (792)
Q Consensus 193 ~LasgSdd~V~IWDlrt 209 (792)
.+.+.++.-+.+-+...
T Consensus 141 avlt~~g~v~~i~~~~~ 157 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEE 157 (829)
T ss_pred EEEecCCcEEEEcCCCc
Confidence 66665544345555444
No 441
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=55.55 E-value=4e+02 Score=34.47 Aligned_cols=120 Identities=10% Similarity=0.113 Sum_probs=64.3
Q ss_pred eEEEEECCCCcEEEEecCC----CCCcEEEEEccCCCCEEEEEeCC------------CeEEEEECC-CCcEE---EEec
Q 036953 118 TVKIIDCQTGNCLKVLSGH----RRTPWVVRFHPLRSEILASGSLD------------HEVRLWDAN-TSECI---GSCD 177 (792)
Q Consensus 118 tVrIWDl~tgk~v~~L~gH----~~~VtsVafSP~dg~lLaSgS~D------------gtVrLWDl~-tg~~v---~t~~ 177 (792)
.|+++|..+++.+..+.-. .-.|..+.|+..+...++..+.+ +.++.|++- .++.+ ....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 3788888877766555421 12466677776333323333322 224444432 23322 2222
Q ss_pred cCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEE
Q 036953 178 FYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 178 h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
..+.+. +..|-+.++.+|-++.+++||+-..+..+ ..........|+.+++. +.+++++.
T Consensus 934 ~~~~v~--Ai~~f~~~~LagvG~~l~~YdlG~K~lLR-k~e~k~~p~~Is~iqt~--~~RI~VgD 993 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVLAGVGRFLRLYDLGKKKLLR-KCELKFIPNRISSIQTY--GARIVVGD 993 (1205)
T ss_pred CCccce--EEeccCCEEEEecccEEEEeeCChHHHHh-hhhhccCceEEEEEeec--ceEEEEee
Confidence 334443 44576778888877889999997776443 11111134557777664 45555544
No 442
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=55.41 E-value=43 Score=24.74 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=27.1
Q ss_pred CCC-EEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEE
Q 036953 149 RSE-ILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAF 187 (792)
Q Consensus 149 dg~-lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVaf 187 (792)
+++ ++++...+++|.++|..+++.+..+........+.|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 344 455555688999999999888887765544455554
No 443
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=54.74 E-value=3.9e+02 Score=30.81 Aligned_cols=193 Identities=16% Similarity=0.143 Sum_probs=103.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEeeecccceeeCCCCceeeeEEeeCCCceEeecCCCceeecCC-cEEEEEe--CC--C
Q 036953 5 SWPHDQNSLRSQPSNHLRRRARNVSRLLAHREISPKTKYVPKRQWVDASKLKTCGPSDSSVRDAK-RGLVSWV--EA--E 79 (792)
Q Consensus 5 ~w~~~~~~~~~~~~~s~~s~~r~V~~l~~~rels~~tk~V~s~aWspd~~lla~G~~a~sv~d~~-~~L~S~s--~d--~ 79 (792)
.|+...++.++....-.++.+..+|++..+........+.+.+.-.... .+ .++ .-|+..+ ++ .
T Consensus 59 IWvnp~dp~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf----------~l-~g~~vDlavas~R~~g~n 127 (381)
T PF02333_consen 59 IWVNPADPAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGF----------PL-NGKTVDLAVASDRSDGRN 127 (381)
T ss_dssp EE--SS-GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEE----------EE-TTEEEEEEEEEE-CCCT-
T ss_pred EecCCCCcccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecce----------ec-CCceEEEEEEecCcCCCC
Confidence 4666665555555555677889999887765544444444433221110 01 111 1122222 11 3
Q ss_pred eEEEEecc--CCCcC----------CCCCCeEEEEE--cC-CCC-EEEEEECCCeEEEEECC---CC----cEEEEecCC
Q 036953 80 SLRHLSAK--YCPLV----------PPPRSTIAAAF--SP-DGR-TLASTHGDHTVKIIDCQ---TG----NCLKVLSGH 136 (792)
Q Consensus 80 sIrvWd~~--t~~L~----------gH~~~V~sLaf--SP-DG~-~LaSGS~DGtVrIWDl~---tg----k~v~~L~gH 136 (792)
+|++|.+. ++.|. .-...++.+++ ++ +|+ +++....+|.+.-|.+. .+ +.++.|..
T Consensus 128 ~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~- 206 (381)
T PF02333_consen 128 SLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV- 206 (381)
T ss_dssp EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--
T ss_pred eEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-
Confidence 56666543 22221 11133566664 54 555 55667889988877664 23 35677763
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-----CcEEEEec---cCCCeeEEEEc--CCC-cEEEEEc--CCeEE
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-----SECIGSCD---FYRPIASIAFH--AEG-ELLAVAS--GHKLY 203 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-----g~~v~t~~---h~s~V~sVafS--pdG-~~LasgS--dd~V~ 203 (792)
...+.+|.... ....|+.+-+|.-|.-|+.+- ++.+.... ....+..++.- .++ .||++++ ++...
T Consensus 207 ~sQ~EGCVVDD-e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~ 285 (381)
T PF02333_consen 207 GSQPEGCVVDD-ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFA 285 (381)
T ss_dssp SS-EEEEEEET-TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEE
T ss_pred CCcceEEEEec-ccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEE
Confidence 34788888887 777899999998888888763 22332222 34567777764 344 4777776 56699
Q ss_pred EEECCCC
Q 036953 204 IWPYNNK 210 (792)
Q Consensus 204 IWDlrt~ 210 (792)
|||.+..
T Consensus 286 Vy~r~~~ 292 (381)
T PF02333_consen 286 VYDREGP 292 (381)
T ss_dssp EEESSTT
T ss_pred EEecCCC
Confidence 9998654
No 444
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=54.36 E-value=81 Score=36.23 Aligned_cols=98 Identities=8% Similarity=0.077 Sum_probs=56.6
Q ss_pred EEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEcc----CCCCEEEEEeCCCeEEEEECCCCcEEEEeccC-----C
Q 036953 110 LASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHP----LRSEILASGSLDHEVRLWDANTSECIGSCDFY-----R 180 (792)
Q Consensus 110 LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP----~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~-----s 180 (792)
++....+..++++...+.+..++.....-....+++-+ ..+..|++-..||.++++.+..-+.+...... .
T Consensus 228 ~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~ 307 (395)
T PF08596_consen 228 YVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSR 307 (395)
T ss_dssp EEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HH
T ss_pred EEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccc
Confidence 34444567899999988877665553323334445521 14667888889999999999998888776432 2
Q ss_pred CeeEEEEcCCCcEEEEEcCCeEEEEEC
Q 036953 181 PIASIAFHAEGELLAVASGHKLYIWPY 207 (792)
Q Consensus 181 ~V~sVafSpdG~~LasgSdd~V~IWDl 207 (792)
.+....++++|+.++..+...+.++.+
T Consensus 308 ~~~~ssis~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 308 RLSSSSISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp HHTT-EE-TTS-EEEE-SSSEEEEEEE
T ss_pred cccccEECCCCCEEEEeCcccEEEEEE
Confidence 345677899999998888666444443
No 445
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=53.44 E-value=4.4e+02 Score=31.01 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=43.5
Q ss_pred EEEEE---ECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCe---
Q 036953 109 TLAST---HGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPI--- 182 (792)
Q Consensus 109 ~LaSG---S~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V--- 182 (792)
+++.. ...+...++|. .|...+.+.........+...+ ++.+++... ..++.+|+. |+.++.+......
T Consensus 117 ~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~-nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~ 191 (477)
T PF05935_consen 117 YFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLP-NGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDF 191 (477)
T ss_dssp EEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-T-TS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B
T ss_pred EEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcC-CCCEEEecC--CceEEEcCC-CCEEEeeecCCccccc
Confidence 45554 24566777785 4666666653222221155566 777776554 789999985 6666666544332
Q ss_pred -eEEEEcCCCcEEEEEc
Q 036953 183 -ASIAFHAEGELLAVAS 198 (792)
Q Consensus 183 -~sVafSpdG~~LasgS 198 (792)
..+..-|+|++|+.+.
T Consensus 192 HHD~~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 192 HHDIDELPNGNLLILAS 208 (477)
T ss_dssp -S-EEE-TTS-EEEEEE
T ss_pred ccccEECCCCCEEEEEe
Confidence 4667778898887666
No 446
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=53.29 E-value=1.3e+02 Score=33.52 Aligned_cols=102 Identities=16% Similarity=0.050 Sum_probs=59.1
Q ss_pred CEEEEEECCCeEEEEECCCCcEEEEecCCC--CCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCC--Cee
Q 036953 108 RTLASTHGDHTVKIIDCQTGNCLKVLSGHR--RTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYR--PIA 183 (792)
Q Consensus 108 ~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~--~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s--~V~ 183 (792)
..++.+..||.|.-.|..+++.++....-. ..+.+-.+.. +++ ++.++.++.+..+|.++|+.++.+.... .+.
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 345555788888888888888766544221 2233323332 444 7777888899999999999988886544 111
Q ss_pred EEEEcCCCcEEEEEcCCeEEEEECCCCC
Q 036953 184 SIAFHAEGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 184 sVafSpdG~~LasgSdd~V~IWDlrt~~ 211 (792)
.-..-.++..++...++.++..|..+++
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG~ 174 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTGT 174 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCCc
Confidence 1122223333333233445555555544
No 447
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.68 E-value=1.6e+02 Score=36.68 Aligned_cols=73 Identities=11% Similarity=0.150 Sum_probs=47.7
Q ss_pred CCcEEEEEccCCCCEEEEEeCCCeEEEEECCC----------CcE--E-EEe---------ccCCCeeEEEEcCCC---c
Q 036953 138 RTPWVVRFHPLRSEILASGSLDHEVRLWDANT----------SEC--I-GSC---------DFYRPIASIAFHAEG---E 192 (792)
Q Consensus 138 ~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t----------g~~--v-~t~---------~h~s~V~sVafSpdG---~ 192 (792)
-.|..|.++| ++++++..|..+- .+-.+.. ++. . +++ .....|..+.|||.+ .
T Consensus 85 f~v~~i~~n~-~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNP-TGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECC-CCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3578899999 8999988887654 3333321 111 1 111 123468899999974 4
Q ss_pred -EEEEEcCCeEEEEECCCCCc
Q 036953 193 -LLAVASGHKLYIWPYNNKEE 212 (792)
Q Consensus 193 -~LasgSdd~V~IWDlrt~~~ 212 (792)
+++..+|+.+++||+.....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred eEEEEecCCEEEEEecCCCCC
Confidence 55556688899999976553
No 448
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=52.62 E-value=1.5e+02 Score=36.84 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=70.1
Q ss_pred CCeEEEEEcC--CCCEEEEEECCCeEEEEECCC-------C----c---------EEEEecCCCCCcEEEEEc--cCCCC
Q 036953 96 RSTIAAAFSP--DGRTLASTHGDHTVKIIDCQT-------G----N---------CLKVLSGHRRTPWVVRFH--PLRSE 151 (792)
Q Consensus 96 ~~V~sLafSP--DG~~LaSGS~DGtVrIWDl~t-------g----k---------~v~~L~gH~~~VtsVafS--P~dg~ 151 (792)
..|+-|.... +...|+.+..||.|.+|.+.+ . + +-..+. -...+++++++ . ..+
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~r 178 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSR 178 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cce
Confidence 4466666554 556888999999999997631 0 0 112222 34578999998 6 677
Q ss_pred EEEEEeCCCeEEEEECCCC--c--EEEEeccCCCeeEEEEcCCC-----c-EEEEEc-CCeEEEEEC
Q 036953 152 ILASGSLDHEVRLWDANTS--E--CIGSCDFYRPIASIAFHAEG-----E-LLAVAS-GHKLYIWPY 207 (792)
Q Consensus 152 lLaSgS~DgtVrLWDl~tg--~--~v~t~~h~s~V~sVafSpdG-----~-~LasgS-dd~V~IWDl 207 (792)
+||.++....|.+|-.... + ......+..-|-+|+|-++. . ++++++ .+.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888877778887754431 1 11123356678888886543 2 566566 666777666
No 449
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=52.01 E-value=61 Score=34.28 Aligned_cols=51 Identities=18% Similarity=0.236 Sum_probs=36.7
Q ss_pred CcEEEEEcCCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 191 GELLAVASGHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 191 G~~LasgSdd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
+.+|+++++.+|.+|++...+.. +...+..-+.|..+.++..|+++++-=.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~--~~~~F~Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECP--LLCTFSTVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCc--eeEEEcchhheeEEEeccccceEEEEEe
Confidence 34445566777999999844332 4455667789999999999998876443
No 450
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=50.73 E-value=16 Score=45.49 Aligned_cols=113 Identities=11% Similarity=0.184 Sum_probs=67.0
Q ss_pred EEEEEcC---CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEE-----------EccCCCCEEEEEeCCCeEEE
Q 036953 99 IAAAFSP---DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVR-----------FHPLRSEILASGSLDHEVRL 164 (792)
Q Consensus 99 ~sLafSP---DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVa-----------fSP~dg~lLaSgS~DgtVrL 164 (792)
.-+.|.| +..++..+-.+++|++.+.++... ..|.+|...+..++ .+| ||..++....||.++.
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f 261 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGF 261 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccce
Confidence 4444554 566777777788888877654432 34455766555433 578 8889999999998888
Q ss_pred EECC-CC----cEEEEec-cC-CCeeEEEEcCCC---------cEEEEEcC-C-eEEEEECCCCCcc
Q 036953 165 WDAN-TS----ECIGSCD-FY-RPIASIAFHAEG---------ELLAVASG-H-KLYIWPYNNKEEA 213 (792)
Q Consensus 165 WDl~-tg----~~v~t~~-h~-s~V~sVafSpdG---------~~LasgSd-d-~V~IWDlrt~~~~ 213 (792)
|.+. ++ .|+..++ |. .+-.|..++.+. .+++++++ + .+++|.....++.
T Consensus 262 ~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 262 YQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 8654 22 3444443 33 222222233321 24455553 3 3999988777653
No 451
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=50.60 E-value=5.3e+02 Score=31.17 Aligned_cols=105 Identities=17% Similarity=0.072 Sum_probs=58.7
Q ss_pred CCCEEEEEECCC-----eEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCC------eEEEEECCCCcEEE
Q 036953 106 DGRTLASTHGDH-----TVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDH------EVRLWDANTSECIG 174 (792)
Q Consensus 106 DG~~LaSGS~DG-----tVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg------tVrLWDl~tg~~v~ 174 (792)
+|...++|+.|| +|..||..+.+-...- .......+......++.+.+.||.|+ ++..||..+.+...
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~ 458 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL 458 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccC-CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee
Confidence 688889998886 4677777655421111 12112222222222678889988654 57788888876443
Q ss_pred Eec--cCCCeeEEEEcCCCcEEEEEcCC------eEEEEECCCCCc
Q 036953 175 SCD--FYRPIASIAFHAEGELLAVASGH------KLYIWPYNNKEE 212 (792)
Q Consensus 175 t~~--h~s~V~sVafSpdG~~LasgSdd------~V~IWDlrt~~~ 212 (792)
.-. ....-..++ .-++.+.+.|+.+ .|..||..+.+-
T Consensus 459 ~~~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W 503 (571)
T KOG4441|consen 459 IAPMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQW 503 (571)
T ss_pred cCCcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCce
Confidence 321 111111222 2356677777632 278888877664
No 452
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=50.07 E-value=1.2e+02 Score=27.61 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=31.6
Q ss_pred eCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc
Q 036953 157 SLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS 198 (792)
Q Consensus 157 S~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS 198 (792)
..+|.+..||..+++....+..-...+.|+.++|+.+|+++-
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 446788899999988766666666789999999999888875
No 453
>PHA03098 kelch-like protein; Provisional
Probab=48.15 E-value=3.3e+02 Score=32.02 Aligned_cols=101 Identities=14% Similarity=0.171 Sum_probs=51.6
Q ss_pred CCCEEEEEECC------CeEEEEECCCCcEEE--EecCCCCCcEEEEEccCCCCEEEEEeCC--------CeEEEEECCC
Q 036953 106 DGRTLASTHGD------HTVKIIDCQTGNCLK--VLSGHRRTPWVVRFHPLRSEILASGSLD--------HEVRLWDANT 169 (792)
Q Consensus 106 DG~~LaSGS~D------GtVrIWDl~tgk~v~--~L~gH~~~VtsVafSP~dg~lLaSgS~D--------gtVrLWDl~t 169 (792)
+++.++.|+.+ ..+..||..+++-.. .+...... .++... ++.+++.|+.+ ..+.+||..+
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceEEEE--CCEEEEECCccCCCCCcccceEEEecCCC
Confidence 56667777632 457888987654221 11111111 122222 56777777643 2388899887
Q ss_pred CcEEEEec--cCC-CeeEEEEcCCCcEEEEEcC------CeEEEEECCCCC
Q 036953 170 SECIGSCD--FYR-PIASIAFHAEGELLAVASG------HKLYIWPYNNKE 211 (792)
Q Consensus 170 g~~v~t~~--h~s-~V~sVafSpdG~~LasgSd------d~V~IWDlrt~~ 211 (792)
.+....-. ... ....+.+ ++++++.|+. +.+.+||..+.+
T Consensus 466 ~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 466 NKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 76443221 111 1112222 5666666652 237777776554
No 454
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.00 E-value=67 Score=38.14 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=50.9
Q ss_pred CeEEEEEcCCCCEEEEEECCCeEEEEEC---------CCCcEEE---E-------ec-CCCCCcEEEEEccCC--CCEEE
Q 036953 97 STIAAAFSPDGRTLASTHGDHTVKIIDC---------QTGNCLK---V-------LS-GHRRTPWVVRFHPLR--SEILA 154 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~DGtVrIWDl---------~tgk~v~---~-------L~-gH~~~VtsVafSP~d--g~lLa 154 (792)
.|..+..++.|..++-.+.+|.+.++=. ..|+.+. + |. ...-.+..++|||+. +..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4788889999999999999986655421 2333211 1 11 111245668899944 46677
Q ss_pred EEeCCCeEEEEECCCCcEE
Q 036953 155 SGSLDHEVRLWDANTSECI 173 (792)
Q Consensus 155 SgS~DgtVrLWDl~tg~~v 173 (792)
.-+.|++||+||+...+.+
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 7788999999998776554
No 455
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=46.63 E-value=1.6e+02 Score=32.76 Aligned_cols=102 Identities=17% Similarity=0.286 Sum_probs=53.8
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcE---EEEe-----ccCCCeeEEEEcCC---CcEEEEE-cC-------
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSEC---IGSC-----DFYRPIASIAFHAE---GELLAVA-SG------- 199 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~---v~t~-----~h~s~V~sVafSpd---G~~Lasg-Sd------- 199 (792)
..+.|+|.| +++++++ ...|.|++++ ..+.. +..+ ........++++|+ ..+|.+. +.
T Consensus 3 ~P~~~a~~p-dG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEET-TSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeC-CCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 357899999 7777665 6699999999 44432 2222 23456889999995 2333333 21
Q ss_pred --CeEEEEECCCC--Cc--ccCCeEEec----CCCCeEEEEEccCCCeEEEEEe
Q 036953 200 --HKLYIWPYNNK--EE--ASSPIIVLK----TRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 200 --d~V~IWDlrt~--~~--~~~~~~~~~----h~~sVtsVafSPdG~~LlaS~s 243 (792)
..|.-|.+... .. ......... ....-..+.|.|||..+++.+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 12444544333 10 110111111 2334567999999964444444
No 456
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=46.29 E-value=5.2e+02 Score=29.83 Aligned_cols=106 Identities=10% Similarity=0.034 Sum_probs=65.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc-----EEEEecC--CCCCcEEEEEccCCCCEEEEEeCCCeEEEEEC
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGN-----CLKVLSG--HRRTPWVVRFHPLRSEILASGSLDHEVRLWDA 167 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk-----~v~~L~g--H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl 167 (792)
...+..+.|.+++..++++ .+|.+ +|....++ ....+.- -...+.++.|.+ ++.. +.++.+|.+....
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~-d~~~-~a~G~~G~v~~s~- 354 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRS-KKEA-WAAGGSGILLRST- 354 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcC-CCcE-EEEECCCcEEEeC-
Confidence 4568899999998877765 55654 34444443 1222221 123488899987 5554 5556777666653
Q ss_pred CCCcEEEEec----cCCCeeEEEEcCCCcEEEEEcCCeEEEE
Q 036953 168 NTSECIGSCD----FYRPIASIAFHAEGELLAVASGHKLYIW 205 (792)
Q Consensus 168 ~tg~~v~t~~----h~s~V~sVafSpdG~~LasgSdd~V~IW 205 (792)
..++.-.... -...++.+.|.++++-++++.++.|.-|
T Consensus 355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 3444322222 2346789999888888888887765443
No 457
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=46.06 E-value=4.6e+02 Score=29.19 Aligned_cols=110 Identities=11% Similarity=0.000 Sum_probs=63.2
Q ss_pred cCCcEEEEEeCCCeEEEEeccCCCcC------CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCC-CC
Q 036953 67 DAKRGLVSWVEAESLRHLSAKYCPLV------PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHR-RT 139 (792)
Q Consensus 67 d~~~~L~S~s~d~sIrvWd~~t~~L~------gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~-~~ 139 (792)
..+.+++....++.|.-.+..++... +....+.+-.+-.+|+ |+.++.++.++.+|..+|+.+..+.... ..
T Consensus 66 ~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~ 144 (370)
T COG1520 66 DGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPY 144 (370)
T ss_pred eeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeE
Confidence 34445555555555555555444311 1011222222222565 7778888888889988899998887655 11
Q ss_pred cEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC
Q 036953 140 PWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY 179 (792)
Q Consensus 140 VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~ 179 (792)
+..-..- ....+..++.|+.+...|..+++..+.+...
T Consensus 145 ~~~~~v~--~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~ 182 (370)
T COG1520 145 YASPPVV--GDGTVYVGTDDGHLYALNADTGTLKWTYETP 182 (370)
T ss_pred EecCcEE--cCcEEEEecCCCeEEEEEccCCcEEEEEecC
Confidence 1111111 2234444447899999999999888876543
No 458
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=45.00 E-value=26 Score=43.69 Aligned_cols=100 Identities=19% Similarity=0.332 Sum_probs=57.9
Q ss_pred EEEeCCCeEEEEeccCC---CcCCCCCCeEEEE-----------EcCCCCEEEEEECCCeEEEEECC-CC----cEEEEe
Q 036953 73 VSWVEAESLRHLSAKYC---PLVPPPRSTIAAA-----------FSPDGRTLASTHGDHTVKIIDCQ-TG----NCLKVL 133 (792)
Q Consensus 73 ~S~s~d~sIrvWd~~t~---~L~gH~~~V~sLa-----------fSPDG~~LaSGS~DGtVrIWDl~-tg----k~v~~L 133 (792)
.-..+++.+++...... -+.+|...+..++ .||||+.|+....||.++.|.+. +| .|+...
T Consensus 199 c~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhew 278 (1283)
T KOG1916|consen 199 CYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEW 278 (1283)
T ss_pred eeccCCCceeEeeechHHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhcc
Confidence 33345666776665433 2445766655544 58999999999999999988764 22 234444
Q ss_pred cCCCC-CcEEEEEccCCC---------CEEEEEe-CCCeEEEEECCCCcEE
Q 036953 134 SGHRR-TPWVVRFHPLRS---------EILASGS-LDHEVRLWDANTSECI 173 (792)
Q Consensus 134 ~gH~~-~VtsVafSP~dg---------~lLaSgS-~DgtVrLWDl~tg~~v 173 (792)
+.|.+ +-.|.-|+. +. .++++++ .+..+++|....-+|+
T Consensus 279 kphd~~p~vC~lc~~-~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 279 KPHDKHPRVCWLCHK-QEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCCCceeeeecc-ccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 55552 222211322 11 2344444 4566888887665655
No 459
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.00 E-value=1.4e+02 Score=35.05 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=72.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE----EecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLK----VLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT- 169 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~----~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t- 169 (792)
.++|.++.||+|.+.||+--.|++|.+++....+... +-+..+..|.+.+|+. ..-++..+..| +.+|.+..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEEchh
Confidence 4589999999999999999999999999984333221 1223345688999985 35555555443 56665433
Q ss_pred CcEEEEe-ccCCCeeEEEEcCCCcEEEEEcC---CeEEEEECCCCC
Q 036953 170 SECIGSC-DFYRPIASIAFHAEGELLAVASG---HKLYIWPYNNKE 211 (792)
Q Consensus 170 g~~v~t~-~h~s~V~sVafSpdG~~LasgSd---d~V~IWDlrt~~ 211 (792)
.+.++.. .++-.|+-..|.++-+.+..++. +.+.=+.++.+.
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence 2222222 35667888888888876555442 224444444443
No 460
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.96 E-value=2e+02 Score=34.33 Aligned_cols=74 Identities=14% Similarity=0.177 Sum_probs=48.5
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEE---------CCCCcEEEEe---c-------cC--CCeeEEEEcCCC----cE
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWD---------ANTSECIGSC---D-------FY--RPIASIAFHAEG----EL 193 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWD---------l~tg~~v~t~---~-------h~--s~V~sVafSpdG----~~ 193 (792)
.|..+..++ .|..++-.+.+|.+.++= ++.++++.+. . .. -.+..++|||+. .+
T Consensus 105 eV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 456677788 888888888888765542 2234433222 1 11 135678999976 45
Q ss_pred EEEEcCCeEEEEECCCCCcc
Q 036953 194 LAVASGHKLYIWPYNNKEEA 213 (792)
Q Consensus 194 LasgSdd~V~IWDlrt~~~~ 213 (792)
++..+|+.|++||+......
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 56666778999999887654
No 461
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=44.34 E-value=1.3e+02 Score=30.24 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=24.1
Q ss_pred CcEEEEEcc-----CCCCEEEEEeCCCeEEEEECCC
Q 036953 139 TPWVVRFHP-----LRSEILASGSLDHEVRLWDANT 169 (792)
Q Consensus 139 ~VtsVafSP-----~dg~lLaSgS~DgtVrLWDl~t 169 (792)
.|..++|+| ...-+|+..+.++.|.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 688899998 2245788888999999997664
No 462
>smart00020 Tryp_SPc Trypsin-like serine protease. Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.
Probab=43.56 E-value=28 Score=35.10 Aligned_cols=71 Identities=23% Similarity=0.390 Sum_probs=44.1
Q ss_pred cchhhhhH-HhhhccceeEEEeccCcceeEEEeccccccceeEEEecCCcccceeEEEEEE---------EeCCceeEEe
Q 036953 665 FGSVLVSR-AIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTSPIYTVLEVY---------RVSDMELVRV 734 (792)
Q Consensus 665 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 734 (792)
-|.+|..+ .++||||+..-. +..-.+.++.-.+.. ......++|.+++ ...|+.|++.
T Consensus 29 ~GtlIs~~~VLTaahC~~~~~--~~~~~v~~g~~~~~~----------~~~~~~~~v~~~~~~p~~~~~~~~~DiAll~L 96 (229)
T smart00020 29 GGSLISPRWVLTAAHCVYGSD--PSNIRVRLGSHDLSS----------GEEGQVIKVSKVIIHPNYNPSTYDNDIALLKL 96 (229)
T ss_pred EEEEecCCEEEECHHHcCCCC--CcceEEEeCcccCCC----------CCCceEEeeEEEEECCCCCCCCCcCCEEEEEE
Confidence 37777777 899999998766 556666665544322 1111556677665 4567888876
Q ss_pred ecC--CCCceeeEEe
Q 036953 735 LPS--AEDEVNVACF 747 (792)
Q Consensus 735 ~~~--~~~~~n~~~~ 747 (792)
-.. ..+.|.-+|+
T Consensus 97 ~~~i~~~~~~~pi~l 111 (229)
T smart00020 97 KSPVTLSDNVRPICL 111 (229)
T ss_pred CcccCCCCceeeccC
Confidence 544 2345666665
No 463
>PHA02713 hypothetical protein; Provisional
Probab=43.55 E-value=2.6e+02 Score=33.51 Aligned_cols=62 Identities=6% Similarity=0.030 Sum_probs=35.9
Q ss_pred CCCEEEEEeCC------CeEEEEECCC-CcEEEE--eccCCCeeEEEEcCCCcEEEEEc-CC--eEEEEECCCCC
Q 036953 149 RSEILASGSLD------HEVRLWDANT-SECIGS--CDFYRPIASIAFHAEGELLAVAS-GH--KLYIWPYNNKE 211 (792)
Q Consensus 149 dg~lLaSgS~D------gtVrLWDl~t-g~~v~t--~~h~s~V~sVafSpdG~~LasgS-dd--~V~IWDlrt~~ 211 (792)
++++.+.|+.+ ..+..||..+ .+.... +.......+++. -+|++.++|+ ++ .+..||..+.+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL-HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE-ECCEEEEEeeecceeehhhcCccccc
Confidence 56788888764 2467899987 554322 222211222222 2677778877 33 37788877665
No 464
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=43.13 E-value=5.4e+02 Score=29.10 Aligned_cols=72 Identities=17% Similarity=0.148 Sum_probs=46.3
Q ss_pred CCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe-C---C----------------CeEEEE
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS-L---D----------------HEVRLW 165 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~---D----------------gtVrLW 165 (792)
+|+..++=+..|.+.-+|.++|+...... -.+...++.|. +++++.+- . + .-|.+.
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e~Va~-vpG~~rGL~f~---G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vi 287 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQPVAF-LPGFTRGLAFA---GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVI 287 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEEEEEE-CCCCCccccee---CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEE
Confidence 78888888889999999988786443332 34567888886 45665442 1 1 224555
Q ss_pred ECCCCcEEEEeccCCC
Q 036953 166 DANTSECIGSCDFYRP 181 (792)
Q Consensus 166 Dl~tg~~v~t~~h~s~ 181 (792)
|+++|..+..+..++.
T Consensus 288 dl~tG~vv~~l~feg~ 303 (335)
T TIGR03032 288 DLNSGDVVHWLRFEGV 303 (335)
T ss_pred ECCCCCEEEEEEeCCc
Confidence 6666666666554443
No 465
>PRK13684 Ycf48-like protein; Provisional
Probab=42.96 E-value=5.1e+02 Score=28.80 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=56.5
Q ss_pred CCCcEEEEEccCCCCEEEEEeCCCeEEE-EECCCCcEEEEe--ccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcc
Q 036953 137 RRTPWVVRFHPLRSEILASGSLDHEVRL-WDANTSECIGSC--DFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEA 213 (792)
Q Consensus 137 ~~~VtsVafSP~dg~lLaSgS~DgtVrL-WDl~tg~~v~t~--~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~ 213 (792)
.+.+.++.+.+ ++.+++. +..|.+.. +|- .++..... .....++++.+.++++.++++..+.+++=..+.+...
T Consensus 172 ~g~~~~i~~~~-~g~~v~~-g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAV-SSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECC-CCeEEEE-eCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCcc
Confidence 45788899998 6655544 45555443 222 22222222 2446788999999999888877665432223333322
Q ss_pred cCCeEE-ecCCCCeEEEEEccCCCeEEEEE
Q 036953 214 SSPIIV-LKTRRSLRAVHFHPHAAPFVLTA 242 (792)
Q Consensus 214 ~~~~~~-~~h~~sVtsVafSPdG~~LlaS~ 242 (792)
...... ......+.++.|.+++. +++.+
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G 277 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGE-IWAGG 277 (334)
T ss_pred ccccCCccccccceeeEEEcCCCC-EEEEc
Confidence 111100 11224578899998877 44443
No 466
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=42.52 E-value=4.9e+02 Score=28.48 Aligned_cols=119 Identities=16% Similarity=0.167 Sum_probs=73.3
Q ss_pred CCCeEEEEeccCCCcC---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCC-----CCCcEEEEEccC
Q 036953 77 EAESLRHLSAKYCPLV---PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGH-----RRTPWVVRFHPL 148 (792)
Q Consensus 77 ~d~sIrvWd~~t~~L~---gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH-----~~~VtsVafSP~ 148 (792)
..+...+||..+-+.. .....=..++ .|++.|+.......++++|..+.+.+..+.-. -..++-+.|-
T Consensus 108 k~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-- 183 (264)
T PF05096_consen 108 KEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-- 183 (264)
T ss_dssp SSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--
T ss_pred cCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--
Confidence 3556667776543211 1122334444 36888888888889999999888776666522 1245667776
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEec-----------c-----CCCeeEEEEcCCCcEEEEEcC
Q 036953 149 RSEILASGSLDHEVRLWDANTSECIGSCD-----------F-----YRPIASIAFHAEGELLAVASG 199 (792)
Q Consensus 149 dg~lLaSgS~DgtVrLWDl~tg~~v~t~~-----------h-----~s~V~sVafSpdG~~LasgSd 199 (792)
++.+.|=.=....|...|..+|+.+..+. . ..-.+.|+|+|..+.|.+.+.
T Consensus 184 ~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 184 NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 57777766667778888999999887762 0 234789999998877666653
No 467
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=42.08 E-value=51 Score=38.96 Aligned_cols=40 Identities=30% Similarity=0.413 Sum_probs=30.9
Q ss_pred CeEEEEEcC----CCCEEEEEECCCeEEEEECCCCcEEEEecCC
Q 036953 97 STIAAAFSP----DGRTLASTHGDHTVKIIDCQTGNCLKVLSGH 136 (792)
Q Consensus 97 ~V~sLafSP----DG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH 136 (792)
.+..++++. +..+|++-+.|+++|+||+.+++++..+.-.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 456666666 6789999999999999999999998776543
No 468
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=41.65 E-value=1.3e+02 Score=32.44 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=48.3
Q ss_pred EEEEECCCCcEEEEe-ccCCCeeEEEEcCCCcEEEEEcC--C--eEEEEECCC---CCcccCCeEEecCCCCeEEEEEcc
Q 036953 162 VRLWDANTSECIGSC-DFYRPIASIAFHAEGELLAVASG--H--KLYIWPYNN---KEEASSPIIVLKTRRSLRAVHFHP 233 (792)
Q Consensus 162 VrLWDl~tg~~v~t~-~h~s~V~sVafSpdG~~LasgSd--d--~V~IWDlrt---~~~~~~~~~~~~h~~sVtsVafSP 233 (792)
-.+||+.+++..... .......+-.+-+||++|.+|++ + ++++++-.. .....+........++=-.+.--|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 357888887643322 23334445567799999999983 2 289998654 111110111123344444566678
Q ss_pred CCCeEEEEEee
Q 036953 234 HAAPFVLTAEV 244 (792)
Q Consensus 234 dG~~LlaS~s~ 244 (792)
||+.|++++..
T Consensus 128 DG~vlIvGG~~ 138 (243)
T PF07250_consen 128 DGRVLIVGGSN 138 (243)
T ss_pred CCCEEEEeCcC
Confidence 99977777754
No 469
>PF08953 DUF1899: Domain of unknown function (DUF1899); InterPro: IPR015048 This set of proteins are found in various eukaryotic proteins. The function is unknown. ; PDB: 2B4E_A 2AQ5_A.
Probab=41.14 E-value=12 Score=32.23 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=16.7
Q ss_pred CCCCCceEeeecccceeeCCCCceeeeEEeeCC
Q 036953 20 HLRRRARNVSRLLAHREISPKTKYVPKRQWVDA 52 (792)
Q Consensus 20 s~~s~~r~V~~l~~~rels~~tk~V~s~aWspd 52 (792)
.|.+++||+|....++|.+.....+.+..|+.+
T Consensus 3 vR~SKfRhv~g~~~kke~~y~~i~vs~~~~d~n 35 (65)
T PF08953_consen 3 VRSSKFRHVFGKPAKKEECYDNIRVSTSSWDSN 35 (65)
T ss_dssp ----TTTT-EEEE--GGGSEES--B-----SS-
T ss_pred ccccccccccCccCCccccCcCEEEeCccccCC
Confidence 478999999999999999999999999999744
No 470
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=40.50 E-value=2.1e+02 Score=30.90 Aligned_cols=123 Identities=18% Similarity=0.239 Sum_probs=67.6
Q ss_pred EEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeC-C--CeEEEEECCC--CcEEE-----EeccCCCeeEEEEcC
Q 036953 120 KIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSL-D--HEVRLWDANT--SECIG-----SCDFYRPIASIAFHA 189 (792)
Q Consensus 120 rIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~-D--gtVrLWDl~t--g~~v~-----t~~h~s~V~sVafSp 189 (792)
.+||+.+++....-....-...+-.+-+ |++++.+|+. | +.+++++..+ +.+.+ .+....+-....--+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~-dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLP-DGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCC-CCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4899988764332223334445556777 8999999875 2 4588888654 11111 123344445556678
Q ss_pred CCcEEEEEcCCe--EEEEECCCCCcccCCeEEec-----CCCCeE-EEEEccCCCeEEEEEe
Q 036953 190 EGELLAVASGHK--LYIWPYNNKEEASSPIIVLK-----TRRSLR-AVHFHPHAAPFVLTAE 243 (792)
Q Consensus 190 dG~~LasgSdd~--V~IWDlrt~~~~~~~~~~~~-----h~~sVt-sVafSPdG~~LlaS~s 243 (792)
||+.|+.|+... ..+|.-+............. .....+ -+...|+|+.++.+..
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~ 189 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR 189 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC
Confidence 999999998543 55555432211110111111 111222 4667899996666554
No 471
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=39.43 E-value=3.8e+02 Score=29.37 Aligned_cols=59 Identities=15% Similarity=0.173 Sum_probs=40.3
Q ss_pred CCCEEEEEECCCeEEEEECCC--CcEEEEecCCCCCcEEEEEccCCCCEEEEEe-CCCeEEEEECC
Q 036953 106 DGRTLASTHGDHTVKIIDCQT--GNCLKVLSGHRRTPWVVRFHPLRSEILASGS-LDHEVRLWDAN 168 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~t--gk~v~~L~gH~~~VtsVafSP~dg~lLaSgS-~DgtVrLWDl~ 168 (792)
++++|+.|..+| +.+.|+.. ++..+.+ +...|+.+...+ ..++|++-+ ....++.+|+.
T Consensus 12 ~~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~-~~~lLi~Lsgk~~~L~~~~L~ 73 (302)
T smart00036 12 DGKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLE-ENNVLLMISGKKPQLYSHPLS 73 (302)
T ss_pred CCcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEh-hhCEEEEEeCCcceEEEEEHH
Confidence 446899999998 55666654 3344443 567899999998 555555544 44459999984
No 472
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=39.05 E-value=20 Score=41.93 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=98.0
Q ss_pred CCcEEEEEeCCCeEEEEeccCC---CcC---CCCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcE
Q 036953 68 AKRGLVSWVEAESLRHLSAKYC---PLV---PPPRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPW 141 (792)
Q Consensus 68 ~~~~L~S~s~d~sIrvWd~~t~---~L~---gH~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~Vt 141 (792)
|+..++-....+.+.+|+..+. ++. .|.... +.|++.+..++.+-..+.+.|++..+.+.+.+.-.|...++
T Consensus 86 gdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgt 163 (615)
T KOG2247|consen 86 GDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGT 163 (615)
T ss_pred cchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhccccccee
Confidence 4445555667788999998644 332 122232 78999899999999999999999887776666655999999
Q ss_pred EEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCee--------EEEEcCCCcEEEEEcCCeEEEE--ECCCCC
Q 036953 142 VVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIA--------SIAFHAEGELLAVASGHKLYIW--PYNNKE 211 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~--------sVafSpdG~~LasgSdd~V~IW--Dlrt~~ 211 (792)
+++|.+ .++.+.++.|..+.+-...+ +........+... -=.|...|..+...-.+++++. .++...
T Consensus 164 q~av~l--Ed~vil~dcd~~L~v~~qeg-eta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D 240 (615)
T KOG2247|consen 164 QIAVTL--EDYVILCDCDNTLSVTTQEG-ETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELD 240 (615)
T ss_pred EEEecc--cceeeecCcHHHHHHhhhcc-ceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCC
Confidence 999998 56778888787665543322 2222222111111 1124444555554433442222 222222
Q ss_pred cccCCeEEecCCCCeEEEEEccCCC
Q 036953 212 EASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 212 ~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
.. .........+.+.++.|--||.
T Consensus 241 ~p-val~fq~~~gni~cyrwylDg~ 264 (615)
T KOG2247|consen 241 EP-VALQFQEKYGNIHCYRWYLDGY 264 (615)
T ss_pred Cc-cceEeeecCCceeEEEEecccc
Confidence 21 1223444567788888888765
No 473
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=38.55 E-value=1.5e+02 Score=36.84 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=56.0
Q ss_pred CCCEEEEEeCCCeEEEEECCC-------C-------------cEEEEeccCCCeeEEEEc--CCCcEEEEEcCCe-EEEE
Q 036953 149 RSEILASGSLDHEVRLWDANT-------S-------------ECIGSCDFYRPIASIAFH--AEGELLAVASGHK-LYIW 205 (792)
Q Consensus 149 dg~lLaSgS~DgtVrLWDl~t-------g-------------~~v~t~~h~s~V~sVafS--pdG~~LasgSdd~-V~IW 205 (792)
+...|+.|.+||.|.+|-+++ . ++-..+.....+++++++ ...++||++++.. |.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 567899999999999996531 0 122333456678999999 8888999888544 6666
Q ss_pred ECCCCCcccCCeEEecCCCCeEEEEEccCC
Q 036953 206 PYNNKEEASSPIIVLKTRRSLRAVHFHPHA 235 (792)
Q Consensus 206 Dlrt~~~~~~~~~~~~h~~sVtsVafSPdG 235 (792)
-+...+..........+...|-+|+|-++.
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~ 222 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDD 222 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCC
Confidence 554322111011122356678889998765
No 474
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=37.41 E-value=1.9e+02 Score=33.97 Aligned_cols=105 Identities=11% Similarity=0.063 Sum_probs=65.4
Q ss_pred CCCEEEEEECCCeEEEE-ECCCC-c----EEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccC
Q 036953 106 DGRTLASTHGDHTVKII-DCQTG-N----CLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFY 179 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIW-Dl~tg-k----~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~ 179 (792)
.|.-++.++.||-|.-| |...+ . .++.++-....+..+.-.. +.+-+++-...|++.++.....+.+..-...
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~-~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~ 357 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPET-NRKGFYSLYRNGTLQSFYSTSEKLLLFERAY 357 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeecccc-ccceEEEEcCCCceeeeecccCcceehhhhh
Confidence 46678888999999887 44332 1 2233322223333332222 4455667777787777765444433322333
Q ss_pred CCeeEEEEcCCCcEEEEEcCCeEEEEECCCCC
Q 036953 180 RPIASIAFHAEGELLAVASGHKLYIWPYNNKE 211 (792)
Q Consensus 180 s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~ 211 (792)
..+.-++++|.+.+|++-..++++++.+.+..
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred cCcceeeeCcccchheeecCCceEEEEecCCC
Confidence 45667899999999999888889999886654
No 475
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=36.97 E-value=5.2e+02 Score=31.24 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=61.0
Q ss_pred CCCEEEEEECC------CeEEEEECCCCcEEE--EecCCCCCcEEEEEccCCCCEEEEEeCC------CeEEEEECCCCc
Q 036953 106 DGRTLASTHGD------HTVKIIDCQTGNCLK--VLSGHRRTPWVVRFHPLRSEILASGSLD------HEVRLWDANTSE 171 (792)
Q Consensus 106 DG~~LaSGS~D------GtVrIWDl~tgk~v~--~L~gH~~~VtsVafSP~dg~lLaSgS~D------gtVrLWDl~tg~ 171 (792)
.+..++.|+.+ ..+..||..+++-.. .+. +...-.++++. ++.+.++||.| .++..||.++.+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 45667777766 367888887764322 222 33344556665 46899999998 357788988877
Q ss_pred EEEEeccCCC--eeEEEEcCCCcEEEEEc-CC-----eEEEEECCCCCc
Q 036953 172 CIGSCDFYRP--IASIAFHAEGELLAVAS-GH-----KLYIWPYNNKEE 212 (792)
Q Consensus 172 ~v~t~~h~s~--V~sVafSpdG~~LasgS-dd-----~V~IWDlrt~~~ 212 (792)
....-.-... -.+++ .-+|.+.++|+ ++ .+..||..+.+-
T Consensus 361 W~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W 408 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKW 408 (571)
T ss_pred eeccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCcc
Confidence 4432111111 11111 12677777777 32 288888877653
No 476
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.87 E-value=1e+03 Score=31.58 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=62.9
Q ss_pred CCCCeEEEEEcCC-CCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEE--------ccCCCCEEEEEeCCCeEEE
Q 036953 94 PPRSTIAAAFSPD-GRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRF--------HPLRSEILASGSLDHEVRL 164 (792)
Q Consensus 94 H~~~V~sLafSPD-G~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVaf--------SP~dg~lLaSgS~DgtVrL 164 (792)
|...-..|-+-|. ++..+| .|+.+.+|+.+++.....+.+-...|..|.. .| .=++++....-..|.+
T Consensus 77 ~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~-~IqhlLvvaT~~ei~i 153 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVP-EIQHLLVVATPVEIVI 153 (1311)
T ss_pred CcceeeeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchh-hhheeEEecccceEEE
Confidence 4444445555553 333333 4778999999998777777776666665543 22 2234444444455666
Q ss_pred EECC----CCcE---E--EEec-cCCCeeEEEEcCCCcEEEEEcCCeEE
Q 036953 165 WDAN----TSEC---I--GSCD-FYRPIASIAFHAEGELLAVASGHKLY 203 (792)
Q Consensus 165 WDl~----tg~~---v--~t~~-h~s~V~sVafSpdG~~LasgSdd~V~ 203 (792)
+-+. ++.. . .++. .+..|+++....+|+.|.+|-+|.|+
T Consensus 154 lgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~ly 202 (1311)
T KOG1900|consen 154 LGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLY 202 (1311)
T ss_pred EEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCEE
Confidence 5332 2111 0 1111 35568899989999999999888543
No 477
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=35.43 E-value=9.8e+02 Score=31.20 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=72.4
Q ss_pred CeEEEEEcCCCC--EEEEEEC-----------CCeEEEEECC-CCcEEEEec--CCCCCcEEEEEccCCCCEEEEEeCCC
Q 036953 97 STIAAAFSPDGR--TLASTHG-----------DHTVKIIDCQ-TGNCLKVLS--GHRRTPWVVRFHPLRSEILASGSLDH 160 (792)
Q Consensus 97 ~V~sLafSPDG~--~LaSGS~-----------DGtVrIWDl~-tgk~v~~L~--gH~~~VtsVafSP~dg~lLaSgS~Dg 160 (792)
.+..+.|+.... .+++|.. +|.++.|++. .++.+.-+. .-.+.| .+..| -..+++ ++...
T Consensus 879 ~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~-f~~~~L-agvG~ 954 (1205)
T KOG1898|consen 879 SVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICP-FQGRVL-AGVGR 954 (1205)
T ss_pred heeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccc--eEEec-cCCEEE-Eeccc
Confidence 467777776322 3344432 3446666653 333222222 112334 44556 333443 35667
Q ss_pred eEEEEECCCCcEEEEecc---CCCeeEEEEcCCCcEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCC
Q 036953 161 EVRLWDANTSECIGSCDF---YRPIASIAFHAEGELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAA 236 (792)
Q Consensus 161 tVrLWDl~tg~~v~t~~h---~s~V~sVafSpdG~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~ 236 (792)
.+++||+.++++++.... ...|..+.+ .+..+++|. .+.++.+-.+.....-.+.....-.+.|+++.+- |..
T Consensus 955 ~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l-D~~ 1031 (1205)
T KOG1898|consen 955 FLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELL-DYD 1031 (1205)
T ss_pred EEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEe-cCC
Confidence 899999999887766542 445666665 456777776 4455555554433221011112235567776654 344
Q ss_pred eEEEEEe
Q 036953 237 PFVLTAE 243 (792)
Q Consensus 237 ~LlaS~s 243 (792)
.++.+-.
T Consensus 1032 tvagaDr 1038 (1205)
T KOG1898|consen 1032 TVAGADR 1038 (1205)
T ss_pred ceeeccc
Confidence 3554444
No 478
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=34.27 E-value=84 Score=22.03 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=20.8
Q ss_pred EEEEEECCCeEEEEECCCCcEEEEe
Q 036953 109 TLASTHGDHTVKIIDCQTGNCLKVL 133 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~tgk~v~~L 133 (792)
.++.++.++.+..+|..+|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999999877654
No 479
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=34.22 E-value=8.1e+02 Score=28.57 Aligned_cols=141 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCCEEEEEECCCeEEEEECCCCc-----EEEEecCCCCCcEEEEEcc---CCCCEEEEEeCCCeEEEEEC----------
Q 036953 106 DGRTLASTHGDHTVKIIDCQTGN-----CLKVLSGHRRTPWVVRFHP---LRSEILASGSLDHEVRLWDA---------- 167 (792)
Q Consensus 106 DG~~LaSGS~DGtVrIWDl~tgk-----~v~~L~gH~~~VtsVafSP---~dg~lLaSgS~DgtVrLWDl---------- 167 (792)
+..+|++|+.+|.++||+...+. .+...+ -+.+|-.+..-. ......+..=.-+.+.+|.+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Q ss_pred --CCCcEEEEeccCCCeeEEEEcCCC-----cEEEEEc-CCeEEEEECCCCCcccCCeEEecCCCCeEEEEEccCCCeEE
Q 036953 168 --NTSECIGSCDFYRPIASIAFHAEG-----ELLAVAS-GHKLYIWPYNNKEEASSPIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 168 --~tg~~v~t~~h~s~V~sVafSpdG-----~~LasgS-dd~V~IWDlrt~~~~~~~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
-.-+.+...........+++-+-| .+|.+-+ |+.+.+|+-+..- .......-----.+.|.+.-+.++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~----f~~~lp~~llPgPl~Y~~~tDsfv 190 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA----FSRFLPDFLLPGPLCYCPRTDSFV 190 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE----EEEEcCCCCCCcCeEEeecCCEEE
Q ss_pred EEEeeCccccCC
Q 036953 240 LTAEVNDLDSSD 251 (792)
Q Consensus 240 aS~s~~dLrs~d 251 (792)
++.+.|.+....
T Consensus 191 t~sss~~l~~Yk 202 (418)
T PF14727_consen 191 TASSSWTLECYK 202 (418)
T ss_pred EecCceeEEEec
No 480
>PRK13615 lipoprotein LpqB; Provisional
Probab=34.21 E-value=9e+02 Score=29.32 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=80.2
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCC-CcEEEE--
Q 036953 99 IAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANT-SECIGS-- 175 (792)
Q Consensus 99 ~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~t-g~~v~t-- 175 (792)
.+++.++++..++....++.+.++... +.....+. ...++.-.|.+ ++ .+=+.-.+...++..... +.....
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~-~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v 411 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDA-QG-YVWSTPASDPRGLVAWGPDGVGHPVAV 411 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcC-CC-CEEEEeCCCceEEEEecCCCceEEeec
Confidence 688999999999888878878887655 22222233 22455566766 44 444444333445544432 333221
Q ss_pred -eccCCCeeEEEEcCCCcEEEEEc----CCeEEEEECCC-CC---cc-cCCeEEecCCCCeEEEEEccCCCeEEEE
Q 036953 176 -CDFYRPIASIAFHAEGELLAVAS----GHKLYIWPYNN-KE---EA-SSPIIVLKTRRSLRAVHFHPHAAPFVLT 241 (792)
Q Consensus 176 -~~h~s~V~sVafSpdG~~LasgS----dd~V~IWDlrt-~~---~~-~~~~~~~~h~~sVtsVafSPdG~~LlaS 241 (792)
+.....|..+..|+||-.++.-. .++|+|=-+.+ +. .. ..+.........+.++.|..++...+.+
T Consensus 412 ~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~ 487 (557)
T PRK13615 412 SWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLT 487 (557)
T ss_pred cccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEe
Confidence 12346799999999997666543 24466644433 21 11 1122222234488999999988854444
No 481
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=33.02 E-value=4.2e+02 Score=29.24 Aligned_cols=71 Identities=24% Similarity=0.252 Sum_probs=51.4
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCC-Cc--EEEEEcc-CCCCEEEEEeCCCeEEEEECC
Q 036953 98 TIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRR-TP--WVVRFHP-LRSEILASGSLDHEVRLWDAN 168 (792)
Q Consensus 98 V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~-~V--tsVafSP-~dg~lLaSgS~DgtVrLWDl~ 168 (792)
++++....+|.+|+|.-.-..|.+.|-.+|+.++.+.+..+ .. ....|.- ++.+++-....+++|.++|-.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 78888889999999998888999999999999999987622 11 1112322 244455455678888888863
No 482
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=32.88 E-value=7.4e+02 Score=27.69 Aligned_cols=101 Identities=14% Similarity=0.122 Sum_probs=69.9
Q ss_pred CcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEE-eccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccCCe
Q 036953 139 TPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGS-CDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASSPI 217 (792)
Q Consensus 139 ~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t-~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~~~ 217 (792)
....++-.| |+..-+++...+.|--.|..+|+.... +.....-..|...|||..-++-+...|.-.|-++.+....++
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeec
Confidence 345577777 888888888788888888888876554 345556677888899987776554467777776666544233
Q ss_pred EEecCCCCeEEEEEccCCCeEEE
Q 036953 218 IVLKTRRSLRAVHFHPHAAPFVL 240 (792)
Q Consensus 218 ~~~~h~~sVtsVafSPdG~~Lla 240 (792)
.............|.+.|...++
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt 164 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFT 164 (353)
T ss_pred ccccCCCcccceeeCCCccEEEe
Confidence 33334667888999999984443
No 483
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=32.65 E-value=2.7e+02 Score=34.99 Aligned_cols=93 Identities=19% Similarity=0.222 Sum_probs=57.9
Q ss_pred EEEEccCCCCEEEEEeCCC-----eEEEEECCC---CcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcc
Q 036953 142 VVRFHPLRSEILASGSLDH-----EVRLWDANT---SECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEA 213 (792)
Q Consensus 142 sVafSP~dg~lLaSgS~Dg-----tVrLWDl~t---g~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~ 213 (792)
.+.|-| .+..++|-+.|+ .|..+.-+. |+.-...+....+..++|+-....++++..+.|++|-..+...
T Consensus 251 ~LSWkp-qgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhW- 328 (1243)
T COG5290 251 QLSWKP-QGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHW- 328 (1243)
T ss_pred cccccc-CCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEE-
Confidence 388999 888899877554 255554332 3332233344456678888777788887777899998765431
Q ss_pred cCCeEEecCCCCeEEEEEccCCCeE
Q 036953 214 SSPIIVLKTRRSLRAVHFHPHAAPF 238 (792)
Q Consensus 214 ~~~~~~~~h~~sVtsVafSPdG~~L 238 (792)
.....-.-..+.-+.|||..++-
T Consensus 329 --YLK~e~~ip~~s~vkwhpe~~nT 351 (1243)
T COG5290 329 --YLKVERQIPGISYVKWHPEEKNT 351 (1243)
T ss_pred --EEEEeecCCCcceeeeccccCcE
Confidence 11111123446678999976543
No 484
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=31.86 E-value=18 Score=24.92 Aligned_cols=9 Identities=56% Similarity=0.984 Sum_probs=7.4
Q ss_pred cccccccee
Q 036953 602 HFSPCGRYL 610 (792)
Q Consensus 602 ~~~~~~~~~ 610 (792)
=|||.||.+
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 499999975
No 485
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=31.41 E-value=99 Score=21.67 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=21.6
Q ss_pred CEEEEEeCCCeEEEEECCCCcEEEEe
Q 036953 151 EILASGSLDHEVRLWDANTSECIGSC 176 (792)
Q Consensus 151 ~lLaSgS~DgtVrLWDl~tg~~v~t~ 176 (792)
..++.++.++.+..+|.++|+.++.+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 46777888999999999999887654
No 486
>PHA02713 hypothetical protein; Provisional
Probab=31.01 E-value=1e+03 Score=28.63 Aligned_cols=100 Identities=9% Similarity=-0.001 Sum_probs=53.2
Q ss_pred CCCEEEEEECCC-----eEEEEECCCCcEE--EEecCCCCCcEEEEEccCCCCEEEEEeCCC------------------
Q 036953 106 DGRTLASTHGDH-----TVKIIDCQTGNCL--KVLSGHRRTPWVVRFHPLRSEILASGSLDH------------------ 160 (792)
Q Consensus 106 DG~~LaSGS~DG-----tVrIWDl~tgk~v--~~L~gH~~~VtsVafSP~dg~lLaSgS~Dg------------------ 160 (792)
+++..+.|+.++ .+..||..+.+-. ..+.........+.+ ++.+.+.||.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE---CCEEEEEeCCCccccccccccccccccccc
Confidence 677778887653 4788998765321 111111111222222 578888887653
Q ss_pred -----eEEEEECCCCcEEEEec--cCCCeeEEEEcCCCcEEEEEcC-------CeEEEEECCC
Q 036953 161 -----EVRLWDANTSECIGSCD--FYRPIASIAFHAEGELLAVASG-------HKLYIWPYNN 209 (792)
Q Consensus 161 -----tVrLWDl~tg~~v~t~~--h~s~V~sVafSpdG~~LasgSd-------d~V~IWDlrt 209 (792)
++..||..+.+....-. ....-.+++ .-++++.+.|+. ..+..||..+
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 47778887765432211 111111122 225666666652 1267888876
No 487
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=29.20 E-value=1.2e+02 Score=37.61 Aligned_cols=101 Identities=14% Similarity=0.223 Sum_probs=57.8
Q ss_pred CCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCeEEEEECCCCCcccC
Q 036953 136 HRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHKLYIWPYNNKEEASS 215 (792)
Q Consensus 136 H~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~V~IWDlrt~~~~~~ 215 (792)
....++++.-+| .++.++++..|+.|++|+....+..+......+-..+.|...|-+.++ ++.++.-|.-+.--..+
T Consensus 13 ~~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhgl~~~t-sdrr~la~~~dgvvqqq- 89 (1636)
T KOG3616|consen 13 EDEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHGLVTAT-SDRRALAWKEDGVVQQQ- 89 (1636)
T ss_pred ccceeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccceEEEe-ccchhheeeccCcchhh-
Confidence 345678888899 899999999999999999876554333333344445566555533333 34445556433211100
Q ss_pred CeEEecCCCCeEEEEEccCCCeEE
Q 036953 216 PIIVLKTRRSLRAVHFHPHAAPFV 239 (792)
Q Consensus 216 ~~~~~~h~~sVtsVafSPdG~~Ll 239 (792)
............++.+.|..+.++
T Consensus 90 fdyndqsekefss~~cdptaqnvv 113 (1636)
T KOG3616|consen 90 FDYNDQSEKEFSSILCDPTAQNVV 113 (1636)
T ss_pred ccccchhhhhccceecCchhhhhh
Confidence 000111223355666777776655
No 488
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=28.97 E-value=2e+02 Score=25.98 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=30.8
Q ss_pred eEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEc--CCeEEEEECCC
Q 036953 161 EVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVAS--GHKLYIWPYNN 209 (792)
Q Consensus 161 tVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgS--dd~V~IWDlrt 209 (792)
.|..||..+ .......-...+.|.++|++++|.+++ ...|++|..++
T Consensus 37 ~Vvyyd~~~--~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 37 NVVYYDGKE--VKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred eEEEEeCCE--eEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 355555432 222223345667899999999999887 45599998653
No 489
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=28.96 E-value=8.2e+02 Score=27.01 Aligned_cols=99 Identities=23% Similarity=0.335 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCCEEEEEECC------CeEEEEECCCCcEEEEec---------------CCCCCcEEEEEccCCCCEEEE
Q 036953 97 STIAAAFSPDGRTLASTHGD------HTVKIIDCQTGNCLKVLS---------------GHRRTPWVVRFHPLRSEILAS 155 (792)
Q Consensus 97 ~V~sLafSPDG~~LaSGS~D------GtVrIWDl~tgk~v~~L~---------------gH~~~VtsVafSP~dg~lLaS 155 (792)
...+|++.+++.++++.-.+ ..|+.++.. |+....+. ..+...-+++++| +++.|++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEE
Confidence 45588887788888887777 788888876 65544331 1345678999999 8886665
Q ss_pred EeC-----CC--e-------EEE--EECCC-CcEEEEe----c------cCCCeeEEEEcCCCcEEEEE
Q 036953 156 GSL-----DH--E-------VRL--WDANT-SECIGSC----D------FYRPIASIAFHAEGELLAVA 197 (792)
Q Consensus 156 gS~-----Dg--t-------VrL--WDl~t-g~~v~t~----~------h~s~V~sVafSpdG~~Lasg 197 (792)
+.. |+ . +++ ||..+ +++...+ . ....+..+.+-+++++|+.-
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 532 22 1 455 45544 3333333 2 34678899999999987764
No 490
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=28.95 E-value=1.1e+02 Score=22.80 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=23.2
Q ss_pred EEEEEeCCCeEEEEECCCCcEEEEeccC
Q 036953 152 ILASGSLDHEVRLWDANTSECIGSCDFY 179 (792)
Q Consensus 152 lLaSgS~DgtVrLWDl~tg~~v~t~~h~ 179 (792)
.++.++.|+.|.-.|.++|+.++.+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4556689999999999999999988643
No 491
>PF04651 Pox_A12: Poxvirus A12 protein; InterPro: IPR006744 This family contains vaccinia virus protein A12 and its homologues. VVA12 is a virion protein though its function is unknown.
Probab=27.73 E-value=40 Score=34.46 Aligned_cols=21 Identities=48% Similarity=0.773 Sum_probs=15.4
Q ss_pred CCCceeEee-ccceEEEEEecC
Q 036953 751 AGGGLVYGT-KEGKLRILQYDG 771 (792)
Q Consensus 751 ~~~g~~ygt-~~g~~~~~~~~~ 771 (792)
-+|=||||| |+|||-|--+=|
T Consensus 115 N~GKIVYGtvkdGkLeVqG~VG 136 (189)
T PF04651_consen 115 NCGKIVYGTVKDGKLEVQGTVG 136 (189)
T ss_pred cCCcEEEEEeecCeEEeeeeec
Confidence 367799998 889988755433
No 492
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=27.12 E-value=3.2e+02 Score=34.79 Aligned_cols=80 Identities=8% Similarity=0.090 Sum_probs=56.2
Q ss_pred CCeEEEEECCCCcEEEE-eccCCCeeEEEEcCCCcEEEE-Ec-CC---e--EEEEECCCCCcccCCeEEecCCCCeEEEE
Q 036953 159 DHEVRLWDANTSECIGS-CDFYRPIASIAFHAEGELLAV-AS-GH---K--LYIWPYNNKEEASSPIIVLKTRRSLRAVH 230 (792)
Q Consensus 159 DgtVrLWDl~tg~~v~t-~~h~s~V~sVafSpdG~~Las-gS-dd---~--V~IWDlrt~~~~~~~~~~~~h~~sVtsVa 230 (792)
.+.+.+-|.....+... +....+|.+-+|+|||+.|+- .+ ++ + |++-|+++..... ..+.-....|-.-.
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~--vkl~ve~aaiprwr 405 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGL--VKLPVENAAIPRWR 405 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCc--eEeecccccccceE
Confidence 35788888887766655 778889999999999999987 33 33 3 9999998776432 22222345566666
Q ss_pred EccCCCeEEE
Q 036953 231 FHPHAAPFVL 240 (792)
Q Consensus 231 fSPdG~~Lla 240 (792)
...+|+..++
T Consensus 406 v~e~gdt~iv 415 (912)
T TIGR02171 406 VLENGDTVIV 415 (912)
T ss_pred ecCCCCeEEE
Confidence 6777776654
No 493
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=26.22 E-value=1.3e+02 Score=22.46 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.5
Q ss_pred EEEEEECCCeEEEEECCCCcEEEEec
Q 036953 109 TLASTHGDHTVKIIDCQTGNCLKVLS 134 (792)
Q Consensus 109 ~LaSGS~DGtVrIWDl~tgk~v~~L~ 134 (792)
.++.++.||.|.-.|..+|+.+..++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 45667889999999999999998886
No 494
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=25.98 E-value=1.4e+02 Score=36.88 Aligned_cols=108 Identities=13% Similarity=0.136 Sum_probs=66.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEE
Q 036953 95 PRSTIAAAFSPDGRTLASTHGDHTVKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGSLDHEVRLWDANTSECIG 174 (792)
Q Consensus 95 ~~~V~sLafSPDG~~LaSGS~DGtVrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~ 174 (792)
...++++.-+|.++.+++++.||.|.+|+.......+... ...+-..+.|.. .-|++...|..+.-|.- +|-..+
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tn---hgl~~~tsdrr~la~~~-dgvvqq 88 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTN---HGLVTATSDRRALAWKE-DGVVQQ 88 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeec---cceEEEeccchhheeec-cCcchh
Confidence 3457788888999999999999999999986554322221 223444567765 34677777888888864 333333
Q ss_pred Eec----cCCCeeEEEEcCCCcEEEEEcCCeEEEEEC
Q 036953 175 SCD----FYRPIASIAFHAEGELLAVASGHKLYIWPY 207 (792)
Q Consensus 175 t~~----h~s~V~sVafSpdG~~LasgSdd~V~IWDl 207 (792)
.|. ......++...|..+.++-.--++|.-+|.
T Consensus 89 qfdyndqsekefss~~cdptaqnvvgtlcggv~q~dc 125 (1636)
T KOG3616|consen 89 QFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFDC 125 (1636)
T ss_pred hccccchhhhhccceecCchhhhhhhhhccceeeehH
Confidence 342 233455666666655444322234666664
No 495
>PHA03098 kelch-like protein; Provisional
Probab=25.93 E-value=5.7e+02 Score=29.99 Aligned_cols=101 Identities=15% Similarity=0.193 Sum_probs=53.6
Q ss_pred CCCEEEEEECCC------eEEEEECCCCcEEEEecC---CCCCcEEEEEccCCCCEEEEEeCC-----CeEEEEECCCCc
Q 036953 106 DGRTLASTHGDH------TVKIIDCQTGNCLKVLSG---HRRTPWVVRFHPLRSEILASGSLD-----HEVRLWDANTSE 171 (792)
Q Consensus 106 DG~~LaSGS~DG------tVrIWDl~tgk~v~~L~g---H~~~VtsVafSP~dg~lLaSgS~D-----gtVrLWDl~tg~ 171 (792)
++..++.|+.++ .+..||..+++-. .+.. .......+.+ ++.+++.||.+ ..+..||..+.+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 566667776542 5677887766532 2221 1112222222 56788888865 357788888765
Q ss_pred EEEEec--cCCCeeEEEEcCCCcEEEEEcC-------CeEEEEECCCCC
Q 036953 172 CIGSCD--FYRPIASIAFHAEGELLAVASG-------HKLYIWPYNNKE 211 (792)
Q Consensus 172 ~v~t~~--h~s~V~sVafSpdG~~LasgSd-------d~V~IWDlrt~~ 211 (792)
....-. ....-.+++ .-++++++.|+. +.+..||..+.+
T Consensus 370 W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 370 WREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred eeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 432211 111111122 235666666651 238899987654
No 496
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=25.80 E-value=3.5e+02 Score=35.87 Aligned_cols=42 Identities=14% Similarity=0.002 Sum_probs=31.4
Q ss_pred CCceEEEeEECCCCcEEEEccccccCCCCccccccccccccCCCCCcc
Q 036953 293 LPFLIVPSVSIDDSRIDLQHASRRASSSNMQIEPSASLHLQSDSNVEQ 340 (792)
Q Consensus 293 h~~~VwdV~~SpDGr~lv~~~~~~~~Sg~v~~~~s~~~q~~~~~sgs~ 340 (792)
+-.....++++|||..++ +-+||..|+..+..+-..+.+-.|
T Consensus 660 ~lnsp~alaVsPdg~v~I------AD~gN~rIr~Vs~~~~~~~~sr~Y 701 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVII------ADSGNSRIRKVSARMAKYDGSRTY 701 (1899)
T ss_pred ccCCcceEEECCCCcEEE------ecCCchhhhhhhhcccccCCCcee
Confidence 556778899999999888 678888898877666555543333
No 497
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=25.66 E-value=1.2e+03 Score=28.18 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=78.4
Q ss_pred CCCCCCeEEEEEcCCCCEEEEEECCCe--EEEEECCCCcEEEEecCCCCCcEEEEEccCCCCEEEEEe------CCCe--
Q 036953 92 VPPPRSTIAAAFSPDGRTLASTHGDHT--VKIIDCQTGNCLKVLSGHRRTPWVVRFHPLRSEILASGS------LDHE-- 161 (792)
Q Consensus 92 ~gH~~~V~sLafSPDG~~LaSGS~DGt--VrIWDl~tgk~v~~L~gH~~~VtsVafSP~dg~lLaSgS------~Dgt-- 161 (792)
..+...+..+.|+|+|+.++..+.++. ..+|-+..+. .+..+...|....|++ +++.++... .|+.
T Consensus 56 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~-~g~~~~~~~~~~~~~~~~~~~ 131 (620)
T COG1506 56 LTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSP-DGDRIAFLTAEGASKRDGGDH 131 (620)
T ss_pred cccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCC-CCCeEEEEecccccccCCcee
Confidence 345667888999999999988774332 3344332221 3344556777888988 666655521 1222
Q ss_pred -----EEEEECCCC-cEE--EEe----------ccCCCeeEEEEcCCCcEEEEEc--CC---e---EEEEECCCCCcccC
Q 036953 162 -----VRLWDANTS-ECI--GSC----------DFYRPIASIAFHAEGELLAVAS--GH---K---LYIWPYNNKEEASS 215 (792)
Q Consensus 162 -----VrLWDl~tg-~~v--~t~----------~h~s~V~sVafSpdG~~LasgS--dd---~---V~IWDlrt~~~~~~ 215 (792)
+.+|....+ ... ..+ .....+....++.+++.++... ++ . ..++...+..
T Consensus 132 ~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 207 (620)
T COG1506 132 LFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE---- 207 (620)
T ss_pred eeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc----
Confidence 233433222 111 111 1334556666666666666554 11 1 3344332222
Q ss_pred CeEEecCCCCeEEEEEccCCCeEEEEEe
Q 036953 216 PIIVLKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 216 ~~~~~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
..........+..+.|.++++.+...+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 208 LESLTPGEGSISKLAFDADGKSIALLGT 235 (620)
T ss_pred eEEEcCCCceeeeeeeCCCCCeeEEecc
Confidence 2334445666899999999986655443
No 498
>PRK13615 lipoprotein LpqB; Provisional
Probab=25.23 E-value=1.3e+03 Score=28.03 Aligned_cols=99 Identities=7% Similarity=0.049 Sum_probs=59.1
Q ss_pred EEEEEccCCCCEEEEEeCCCeEEEEECCCCcEEEEeccCCCeeEEEEcCCCcEEEEEcCCe-EEEEECCCCCcccCCeEE
Q 036953 141 WVVRFHPLRSEILASGSLDHEVRLWDANTSECIGSCDFYRPIASIAFHAEGELLAVASGHK-LYIWPYNNKEEASSPIIV 219 (792)
Q Consensus 141 tsVafSP~dg~lLaSgS~DgtVrLWDl~tg~~v~t~~h~s~V~sVafSpdG~~LasgSdd~-V~IWDlrt~~~~~~~~~~ 219 (792)
.+++.++ ++..++....++.+.++.... ... .+.....+..-.|+++| .+.+.-++. .++...............
T Consensus 337 ~s~avS~-dg~~~A~v~~~~~l~vg~~~~-~~~-~~~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~v~v~ 412 (557)
T PRK13615 337 DAATLSA-DGRQAAVRNASGVWSVGDGDR-DAV-LLDTRPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHPVAVS 412 (557)
T ss_pred ccceEcC-CCceEEEEcCCceEEEecCCC-cce-eeccCCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEEeecc
Confidence 6788998 888888887788787776652 222 22223346677788877 555544332 455444332111101111
Q ss_pred ecCCCCeEEEEEccCCCeEEEEEe
Q 036953 220 LKTRRSLRAVHFHPHAAPFVLTAE 243 (792)
Q Consensus 220 ~~h~~sVtsVafSPdG~~LlaS~s 243 (792)
......|..+..|+||.+++.-..
T Consensus 413 ~~~~~~I~~lrvSrDG~R~Avi~~ 436 (557)
T PRK13615 413 WTATGRVVSLEVARDGARVLVQLE 436 (557)
T ss_pred ccCCCeeEEEEeCCCccEEEEEEe
Confidence 113467999999999999887654
No 499
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=22.81 E-value=1e+03 Score=26.11 Aligned_cols=88 Identities=9% Similarity=0.100 Sum_probs=50.8
Q ss_pred CeEEEEeccCCCc----CCCCCCeEEEEEcCCCCEEEEEE------CCCeEEEEECCCCcEEEEecC-----CCCCcEEE
Q 036953 79 ESLRHLSAKYCPL----VPPPRSTIAAAFSPDGRTLASTH------GDHTVKIIDCQTGNCLKVLSG-----HRRTPWVV 143 (792)
Q Consensus 79 ~sIrvWd~~t~~L----~gH~~~V~sLafSPDG~~LaSGS------~DGtVrIWDl~tgk~v~~L~g-----H~~~VtsV 143 (792)
..|.+||....+. .+-.+.|+.+.|..+.+.++.|. ....+..||+.+.. ...+.+ -.++|..+
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEE
Confidence 3466776554422 23456799999986666666664 34568889987654 333333 23778888
Q ss_pred EEccCCCC-EEEEEe-CCC--eEEEEEC
Q 036953 144 RFHPLRSE-ILASGS-LDH--EVRLWDA 167 (792)
Q Consensus 144 afSP~dg~-lLaSgS-~Dg--tVrLWDl 167 (792)
.+...+.. +.+.|. .++ .|..||=
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcC
Confidence 87543443 444443 233 3555543
No 500
>PRK13614 lipoprotein LpqB; Provisional
Probab=22.64 E-value=1.4e+03 Score=27.71 Aligned_cols=104 Identities=6% Similarity=-0.034 Sum_probs=57.9
Q ss_pred ecCCcEEEEEeCCC--eEEEEecc-C----------CCcCCCCC-CeEEEEEcCCCCEEEEE-ECCCe--EEEEEC---C
Q 036953 66 RDAKRGLVSWVEAE--SLRHLSAK-Y----------CPLVPPPR-STIAAAFSPDGRTLAST-HGDHT--VKIIDC---Q 125 (792)
Q Consensus 66 ~d~~~~L~S~s~d~--sIrvWd~~-t----------~~L~gH~~-~V~sLafSPDG~~LaSG-S~DGt--VrIWDl---~ 125 (792)
++....+|+...+. .+...... + -......+ .|..+..|+||.+++.- ..+|. |.|--+ .
T Consensus 390 ~d~~g~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~ 469 (573)
T PRK13614 390 FSPQDWVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNE 469 (573)
T ss_pred ccCCCCEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCC
Confidence 34445677776655 44333321 1 01122333 49999999999987653 34554 655432 2
Q ss_pred CCcEEEEec----CCCCCcEEEEEccCCCCEEEEEe---CCCeEEEEECCCC
Q 036953 126 TGNCLKVLS----GHRRTPWVVRFHPLRSEILASGS---LDHEVRLWDANTS 170 (792)
Q Consensus 126 tgk~v~~L~----gH~~~VtsVafSP~dg~lLaSgS---~DgtVrLWDl~tg 170 (792)
.|.....-. +....+.++.|.. +..+++.+. .+..+++..+..+
T Consensus 470 ~G~P~~L~~~~~~~~~~~~~sl~W~~-~~sl~V~~~~~~~~~~~~~v~v~~g 520 (573)
T PRK13614 470 DGTPRELTAPITLAADSDADTGAWVG-DSTVVVTKASATSNVVPELLSVDAG 520 (573)
T ss_pred CCCeEEccCceecccCCCcceeEEcC-CCEEEEEeccCCCcceEEEEEeCCC
Confidence 343222111 3346889999998 666666543 2344666666443
Done!