BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036958
MGEETSDTVNLDWNLSHGPEAQSGSIATEVVNLDDWVDDPIDRIREVFAAEEKSNEAPKT
CENNNGFLEDEVSDKKDDDEKGNGNDGSFFDSNICLDLARDTPPPPPCDLLCKAIPSVRG
WVTVKNVTPMYGCENSTRESEKDLSLKIPLRPQGWRRFGLAHHLTPPRDGSSARETGERA
NSLINRILTSWGICGEQNTDSALPDDVDMHSGSNAEGEAIWLRSLLLQRQAQAHRAPTFS
YSFSSTLNSAERCLMDTAVEIDSMVLLSTSSSRRRSDSSRVLDVDSGHSGTIQTENCRKF
GTSCCQGGTQET

High Scoring Gene Products

Symbol, full name Information P value
AT3G58030 protein from Arabidopsis thaliana 3.5e-15
AT2G42030 protein from Arabidopsis thaliana 9.3e-12

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036958
        (312 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2095833 - symbol:AT3G58030 species:3702 "Arabi...   161  3.5e-15   2
TAIR|locus:2064584 - symbol:AT2G42030 species:3702 "Arabi...   149  9.3e-12   2


>TAIR|locus:2095833 [details] [associations]
            symbol:AT3G58030 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA;ISS] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
            Prosite:PS00518 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR013083
            InterPro:IPR017907 KO:K10666 HOGENOM:HOG000090666
            ProtClustDB:CLSN2683808 EMBL:AY081289 EMBL:BT006585 IPI:IPI00546255
            RefSeq:NP_001190122.1 RefSeq:NP_191362.2 RefSeq:NP_974453.1
            RefSeq:NP_974454.1 UniGene:At.34773 ProteinModelPortal:Q8RXF2
            SMR:Q8RXF2 EnsemblPlants:AT3G58030.1 EnsemblPlants:AT3G58030.2
            EnsemblPlants:AT3G58030.3 EnsemblPlants:AT3G58030.4 GeneID:824972
            KEGG:ath:AT3G58030 TAIR:At3g58030 eggNOG:NOG244906
            InParanoid:Q8RXF2 OMA:HARRIES PhylomeDB:Q8RXF2
            Genevestigator:Q8RXF2 Uniprot:Q8RXF2
        Length = 436

 Score = 161 (61.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
 Identities = 44/143 (30%), Positives = 62/143 (43%)

Query:    28 TEVVNLDDWVDDPIDRIR-EVFAAEEKSNEAPKTCENNNGFLXXXXXXXXXXXXXXXXXX 86
             T  + L+  + + ++R   +     E+ NE  K CEN +G L                  
Sbjct:    74 TMAIELNQLMGNSVNRAAMQTGEGSERGNEDLKMCENGDGALGDGVLDKKADVEKSSGSD 133

Query:    87 XSFFDSNICLDLARDTXXXXXCDLLC-------------KAIPSVRGWVTVKNVTPMYGC 133
              +FFD NICLDL+++        L C             K  P  +G VT K VTP+YG 
Sbjct:   134 GNFFDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCKGEVTSKTVTPIYGR 193

Query:   134 ENSTRESEKDLSLKIPLRPQGWR 156
              N  RE E+ L  K+P+RP   R
Sbjct:   194 GNHKREIEESLDTKVPMRPHARR 216

 Score = 121 (47.7 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
 Identities = 24/46 (52%), Positives = 29/46 (63%)

Query:     1 MGEETSDTVNLDWNLSHGPEAQSGSIATEVVNLDDWVDDPIDRIRE 46
             MGEE +DT+NLD NL  GPE+       E VNL DW +DP +R  E
Sbjct:     1 MGEELADTMNLDLNLGPGPESDLQPAPNETVNLADWTNDPPERSSE 46

 Score = 87 (35.7 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
 Identities = 35/105 (33%), Positives = 51/105 (48%)

Query:   165 TPPRDGSSARETGER----ANSLINRILTSWGICGEQNTDSALP-------DDVDMHSG- 212
             TP  D S+ RE  ER    ANS++NR++TS G+  EQN  SA         +D+D++   
Sbjct:   249 TPVPDFSN-REASERVNDRANSILNRLMTSRGVRSEQNQASAAAAAIVAASEDIDLNPNI 307

Query:   213 -SNAEGEAIWXXXXXXXXXXXXXXXPTFSYSFSSTLNSAERCLMD 256
               + EGE+                      +F+S L+SAER L+D
Sbjct:   308 APDLEGESNTRFHPLLIRRQLQSHRVARISTFTSALSSAER-LVD 351


>TAIR|locus:2064584 [details] [associations]
            symbol:AT2G42030 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
            evidence=IEA;ISS] InterPro:IPR001841 PROSITE:PS50089 SMART:SM00184
            Prosite:PS00518 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0046872 GO:GO:0008270 EMBL:U90439 Gene3D:3.30.40.10
            InterPro:IPR013083 InterPro:IPR017907 HSSP:P15919 EMBL:AY058184
            EMBL:AY072117 EMBL:AY096666 IPI:IPI00537204 PIR:A84849
            RefSeq:NP_181733.1 UniGene:At.20315 UniGene:At.74233
            ProteinModelPortal:P93744 SMR:P93744 EnsemblPlants:AT2G42030.1
            GeneID:818803 KEGG:ath:AT2G42030 TAIR:At2g42030 eggNOG:NOG251015
            HOGENOM:HOG000090666 InParanoid:P93744 OMA:SEAKECP PhylomeDB:P93744
            ProtClustDB:CLSN2683808 ArrayExpress:P93744 Genevestigator:P93744
            Uniprot:P93744
        Length = 425

 Score = 149 (57.5 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
 Identities = 59/182 (32%), Positives = 77/182 (42%)

Query:    49 AAEEKSNEAPKTCENNNGFLXXXXXXXXXXXXXXXXXXX-SFFDSNICLDLARDTXXXXX 107
             A+ E+  E  K CEN +  +                    SFFD  ICLDL++D      
Sbjct:    97 ASGERVIEDSKKCENGSKVMAEDNVTEEKRDVEKSVGSDGSFFDCYICLDLSKDPVVTNC 156

Query:   108 CDLLC-------------KAIPSVRGWVTVKNVTPMYGCENSTRESEKDLSLKIPLRPQG 154
               L C             K  P  +G V+VK VTP+YG     RESE+  + KIP RPQ 
Sbjct:   157 GHLYCWSCLYQWLQVSEAKECPVCKGEVSVKTVTPIYGRGIQKRESEEVSNTKIPSRPQA 216

Query:   155 WR---------RFG-----LAHHLTPPRDGSSARETGER-ANSLINRILTSWGICGEQNT 199
              R         R G     +  HL    +  S+  TGER A   +NR +TS G+  E+N 
Sbjct:   217 RRTESLRTTLNRSGHIPTEIFRHLQDRLERESS--TGERRARPSLNRFMTSRGVRAEENQ 274

Query:   200 DS 201
              S
Sbjct:   275 SS 276

 Score = 70 (29.7 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
 Identities = 19/37 (51%), Positives = 21/37 (56%)

Query:     1 MGEETSDTVNLDWNLSHGPEAQSG-SIATEVVNLDDW 36
             MGEE S TVNLD NL  GP+ + G   AT      DW
Sbjct:     1 MGEEISSTVNLDLNL--GPDPELGLEPATNYAR-SDW 34


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      312       248   0.00079  114 3  11 23  0.37    34
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  624 (66 KB)
  Total size of DFA:  215 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.26u 0.20s 17.46t   Elapsed:  00:00:00
  Total cpu time:  17.26u 0.20s 17.46t   Elapsed:  00:00:00
  Start:  Fri May 10 14:03:34 2013   End:  Fri May 10 14:03:34 2013

Back to top