BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036958
(312 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 37/122 (30%)
Query: 63 NNNGFLEDEVSDKKDDDEKGNGNDGSFFDSNICLDLARDTPPPPPCDLLCKAI---PSVR 119
++NGF+ + + G N+ FD NICLD A D P LC + P +
Sbjct: 15 HDNGFIAKQKPNLTTAPTAGQANESGCFDCNICLDTAHD-----PVVTLCGHLFCWPCIY 69
Query: 120 GW-----------------------VTVKNVTPMYG----CENSTRESEKD--LSLKIPL 150
W +T+ ++ P+YG +ST S+K LS IP
Sbjct: 70 KWLHVQLSSVSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPR 129
Query: 151 RP 152
RP
Sbjct: 130 RP 131
>sp|P12296|POLG_ENMGO Genome polyprotein OS=Mengo encephalomyocarditis virus PE=1 SV=3
Length = 2293
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 115 IPSVRGWVTVKNVTPMY---GCENSTR-----ESEKDLSLKIPLRPQGW 155
I +V GWVTV +TP+ GC S + + KD SLK+P+ P W
Sbjct: 573 ITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPW 621
>sp|P17593|POLG_EMCVB Genome polyprotein OS=Encephalomyocarditis virus (strain emc-b
nondiabetogenic) PE=3 SV=1
Length = 2292
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 115 IPSVRGWVTVKNVTPMY---GCENSTR-----ESEKDLSLKIPLRPQGW 155
I +V GWVTV +TP+ GC S + + KD SLK+P+ P W
Sbjct: 573 ITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPW 621
>sp|P17594|POLG_EMCVD Genome polyprotein OS=Encephalomyocarditis virus (strain emc-d
diabetogenic) PE=1 SV=2
Length = 2292
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 8/49 (16%)
Query: 115 IPSVRGWVTVKNVTPMY---GCENSTR-----ESEKDLSLKIPLRPQGW 155
I +V GWVTV +TP+ GC S + + KD SLK+P+ P W
Sbjct: 573 ITNVDGWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPW 621
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 35.0 bits (79), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 21/89 (23%)
Query: 84 GNDGSFFDSNICLDLARDTPPPPPCDLLC--------------KAIPSVRGWVTVKNVTP 129
G G+ F+ NICL+ AR+ L C + P + ++ + V P
Sbjct: 19 GGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVP 78
Query: 130 MYGCENSTRESEK--DLSLKIPLRPQGWR 156
+YG R S+K D LK P RPQG R
Sbjct: 79 LYG-----RGSQKPQDPRLKTPPRPQGQR 102
>sp|P32540|POLG_ENMG3 Genome polyprotein (Fragment) OS=Mengo encephalomyocarditis virus
(strain 37A) PE=1 SV=1
Length = 901
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 8/49 (16%)
Query: 120 GWVTVKNVTPMY---GCENSTR-----ESEKDLSLKIPLRPQGWRRFGL 160
GWVTV +TP+ GC S + + KD SLK+P+ P W G+
Sbjct: 578 GWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPWSPQGV 626
>sp|P03304|POLG_EMCV Genome polyprotein OS=Encephalomyocarditis virus PE=1 SV=1
Length = 2290
Score = 34.7 bits (78), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 120 GWVTVKNVTPMY---GCENSTR-----ESEKDLSLKIPLRPQGW 155
GWVTV +TP+ GC S + + KD SLK+P+ P W
Sbjct: 576 GWVTVWQLTPLTYPPGCPTSAKILTMVSAGKDFSLKMPISPAPW 619
>sp|Q9PKI4|SYL_CHLMU Leucine--tRNA ligase OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=leuS PE=3 SV=1
Length = 819
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 150 LRPQGWRRFGLAHHLTPPRDGSSARETGERANSLINRILTSWGICGEQNTDSALPD 205
L P GW FGL R G+ RET E+ + + LTS G +++ + A D
Sbjct: 73 LHPMGWDSFGLPAEQYAIRTGTHPRETTEKNIANFKQQLTSMGFSYDESREFATSD 128
>sp|B0BBI9|SYL_CHLTB Leucine--tRNA ligase OS=Chlamydia trachomatis serovar L2b (strain
UCH-1/proctitis) GN=leuS PE=3 SV=1
Length = 819
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 150 LRPQGWRRFGLAHHLTPPRDGSSARETGERANSLINRILTSWGICGEQNTDSALPD 205
L P GW FGL R G+ RET E+ + + LT+ G +++ + A D
Sbjct: 73 LHPMGWDSFGLPAEQYAIRTGTHPRETTEKNIANFKKQLTAMGFSYDESREFATSD 128
>sp|B0B9V9|SYL_CHLT2 Leucine--tRNA ligase OS=Chlamydia trachomatis serovar L2 (strain
434/Bu / ATCC VR-902B) GN=leuS PE=3 SV=1
Length = 819
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 150 LRPQGWRRFGLAHHLTPPRDGSSARETGERANSLINRILTSWGICGEQNTDSALPD 205
L P GW FGL R G+ RET E+ + + LT+ G +++ + A D
Sbjct: 73 LHPMGWDSFGLPAEQYAIRTGTHPRETTEKNIANFKKQLTAMGFSYDESREFATSD 128
>sp|Q3KMF3|SYL_CHLTA Leucine--tRNA ligase OS=Chlamydia trachomatis serovar A (strain
HAR-13 / ATCC VR-571B) GN=leuS PE=3 SV=1
Length = 819
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 150 LRPQGWRRFGLAHHLTPPRDGSSARETGERANSLINRILTSWGICGEQNTDSALPD 205
L P GW FGL R G+ RET E+ + + LT+ G +++ + A D
Sbjct: 73 LHPMGWDSFGLPAEQYAIRTGTHPRETTEKNIANFKKQLTAMGFSYDESREFATSD 128
>sp|O84211|SYL_CHLTR Leucine--tRNA ligase OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=leuS PE=3 SV=1
Length = 819
Score = 33.1 bits (74), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 150 LRPQGWRRFGLAHHLTPPRDGSSARETGERANSLINRILTSWGICGEQNTDSALPD 205
L P GW FGL R G+ RET E+ + + LT+ G +++ + A D
Sbjct: 73 LHPMGWDSFGLPAEQYAIRTGTHPRETTEKNIANFKKQLTAMGFSYDESREFATSD 128
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 21/89 (23%)
Query: 84 GNDGSFFDSNICLDLARDTPPPPPCDLLC--------------KAIPSVRGWVTVKNVTP 129
G + F+ NICL+ AR+ L C + P + ++ + V P
Sbjct: 19 GGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVP 78
Query: 130 MYGCENSTRESEK--DLSLKIPLRPQGWR 156
+YG R S+K D LK P RPQG R
Sbjct: 79 LYG-----RGSQKPQDPRLKTPPRPQGQR 102
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 21/89 (23%)
Query: 84 GNDGSFFDSNICLDLARDTPPPPPCDLLC--------------KAIPSVRGWVTVKNVTP 129
G + F+ NICL+ AR+ L C + P + ++ + V P
Sbjct: 19 GGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQECPVCKAGISREKVVP 78
Query: 130 MYGCENSTRESEK--DLSLKIPLRPQGWR 156
+YG R S+K D LK P RPQG R
Sbjct: 79 LYG-----RGSQKPQDPRLKTPPRPQGQR 102
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 31.2 bits (69), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 17/88 (19%)
Query: 83 NGNDGSFFDSNICLDLARDTPPPPPCDLLC--------------KAIPSVRGWVTVKNVT 128
+G S F+ NICLD A+D L C + P + ++ V
Sbjct: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI 89
Query: 129 PMYGCENSTRESEKDLSLKIPLRPQGWR 156
P+YG ++ ++ ++ K P RPQG R
Sbjct: 90 PLYGRGSTGQQDPRE---KTPPRPQGQR 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.130 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,313,673
Number of Sequences: 539616
Number of extensions: 5334566
Number of successful extensions: 12047
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 12005
Number of HSP's gapped (non-prelim): 60
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)