Query 036958
Match_columns 312
No_of_seqs 175 out of 801
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 11:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kr4_A Ubiquitin conjugation f 98.9 1.4E-10 4.9E-15 88.7 0.3 52 84-136 9-72 (85)
2 2kre_A Ubiquitin conjugation f 98.9 2.6E-10 9E-15 90.2 0.5 52 84-136 24-87 (100)
3 2egp_A Tripartite motif-contai 98.9 2.4E-09 8.2E-14 78.0 5.0 49 86-135 9-76 (79)
4 1t1h_A Gspef-atpub14, armadill 98.8 3.8E-10 1.3E-14 82.8 0.5 50 86-136 5-67 (78)
5 2ecv_A Tripartite motif-contai 98.8 3.6E-09 1.2E-13 77.2 5.2 49 86-135 16-82 (85)
6 2ecw_A Tripartite motif-contai 98.8 2.9E-09 1E-13 77.7 3.7 49 86-135 16-82 (85)
7 2c2l_A CHIP, carboxy terminus 98.8 8.6E-10 3E-14 95.6 0.1 51 85-136 204-267 (281)
8 3ztg_A E3 ubiquitin-protein li 98.7 1.8E-09 6.3E-14 81.3 1.2 50 86-136 10-75 (92)
9 1wgm_A Ubiquitin conjugation f 98.7 1.6E-09 5.3E-14 85.5 0.7 51 85-136 18-81 (98)
10 3ng2_A RNF4, snurf, ring finge 98.6 3.2E-09 1.1E-13 75.9 0.2 46 85-131 6-70 (71)
11 3lrq_A E3 ubiquitin-protein li 98.6 3.4E-09 1.1E-13 82.3 -0.3 48 88-135 21-81 (100)
12 2djb_A Polycomb group ring fin 98.6 1.4E-08 4.7E-13 73.9 2.9 45 87-131 13-69 (72)
13 2ecy_A TNF receptor-associated 98.6 2.9E-08 1E-12 70.9 4.5 41 86-127 12-65 (66)
14 1jm7_B BARD1, BRCA1-associated 98.6 7.2E-09 2.5E-13 82.2 1.0 48 88-136 21-79 (117)
15 2xeu_A Ring finger protein 4; 98.6 3.7E-09 1.2E-13 73.8 -0.9 44 87-131 1-63 (64)
16 2yu4_A E3 SUMO-protein ligase 98.6 4.3E-09 1.5E-13 81.4 -1.2 49 87-136 5-75 (94)
17 3fl2_A E3 ubiquitin-protein li 98.6 4.7E-09 1.6E-13 83.6 -1.2 47 88-135 51-111 (124)
18 1jm7_A BRCA1, breast cancer ty 98.6 2.6E-08 9E-13 76.8 2.9 47 88-135 20-81 (112)
19 2f42_A STIP1 homology and U-bo 98.5 6.7E-09 2.3E-13 91.0 -0.6 52 84-136 101-165 (179)
20 2csy_A Zinc finger protein 183 98.5 1.2E-08 4.2E-13 75.5 0.7 44 86-131 12-67 (81)
21 2y43_A E3 ubiquitin-protein li 98.5 5.1E-09 1.8E-13 80.2 -1.5 47 88-135 21-80 (99)
22 1bor_A Transcription factor PM 98.5 5.7E-08 1.9E-12 68.5 3.5 38 86-124 3-49 (56)
23 2yur_A Retinoblastoma-binding 98.5 3.8E-08 1.3E-12 72.2 2.3 37 86-123 12-63 (74)
24 2ysl_A Tripartite motif-contai 98.5 4.4E-08 1.5E-12 70.5 2.5 41 86-127 17-72 (73)
25 1g25_A CDK-activating kinase a 98.5 1.8E-08 6.1E-13 71.8 0.3 44 88-132 2-63 (65)
26 1z6u_A NP95-like ring finger p 98.4 2.1E-08 7E-13 84.0 -0.4 47 88-135 77-137 (150)
27 2d8t_A Dactylidin, ring finger 98.4 2.2E-08 7.7E-13 72.6 -0.3 40 86-126 12-63 (71)
28 2ckl_A Polycomb group ring fin 98.4 1.9E-08 6.6E-13 78.3 -1.5 45 88-133 14-75 (108)
29 3htk_C E3 SUMO-protein ligase 98.3 4.6E-08 1.6E-12 91.0 -0.5 58 79-136 171-244 (267)
30 4ayc_A E3 ubiquitin-protein li 98.3 4E-08 1.4E-12 80.0 -0.8 36 88-124 52-99 (138)
31 3hct_A TNF receptor-associated 98.3 7.2E-08 2.4E-12 76.5 0.4 49 86-135 15-76 (118)
32 4ap4_A E3 ubiquitin ligase RNF 98.3 6.8E-08 2.3E-12 75.3 -0.4 48 87-135 5-71 (133)
33 2ct2_A Tripartite motif protei 98.3 2.2E-07 7.5E-12 68.6 2.4 40 86-126 12-70 (88)
34 1rmd_A RAG1; V(D)J recombinati 98.3 9.2E-08 3.2E-12 75.1 -0.1 42 88-130 22-76 (116)
35 2ckl_B Ubiquitin ligase protei 98.3 5E-08 1.7E-12 81.1 -2.0 49 87-135 52-114 (165)
36 3l11_A E3 ubiquitin-protein li 98.3 1.4E-07 4.8E-12 74.0 0.5 38 86-124 12-62 (115)
37 2ect_A Ring finger protein 126 98.2 4.7E-07 1.6E-11 66.2 2.9 45 86-130 12-70 (78)
38 2ea6_A Ring finger protein 4; 98.2 1.7E-07 5.8E-12 66.2 0.2 38 86-124 12-68 (69)
39 1e4u_A Transcriptional repress 98.2 1E-06 3.5E-11 67.0 4.4 41 86-127 8-65 (78)
40 4ap4_A E3 ubiquitin ligase RNF 98.2 1.2E-07 4.1E-12 73.9 -1.3 46 86-132 69-133 (133)
41 3hcs_A TNF receptor-associated 98.2 2.5E-07 8.5E-12 77.0 0.4 48 86-134 15-75 (170)
42 2ecn_A Ring finger protein 141 98.2 4.2E-07 1.4E-11 65.2 1.3 40 86-127 12-63 (70)
43 2ecg_A Baculoviral IAP repeat- 98.1 5.6E-07 1.9E-11 66.5 1.6 36 88-124 24-68 (75)
44 2ysj_A Tripartite motif-contai 98.1 9.7E-07 3.3E-11 62.2 2.6 26 86-112 17-43 (63)
45 2ecj_A Tripartite motif-contai 98.1 1.9E-06 6.4E-11 59.2 3.7 25 87-112 13-38 (58)
46 3knv_A TNF receptor-associated 98.1 3.4E-07 1.1E-11 76.0 -1.1 37 86-123 28-77 (141)
47 4ic3_A E3 ubiquitin-protein li 98.0 1.1E-07 3.8E-12 70.4 -3.9 36 88-124 23-67 (74)
48 2bay_A PRE-mRNA splicing facto 98.0 6.3E-07 2.1E-11 65.4 0.1 44 88-132 2-58 (61)
49 1chc_A Equine herpes virus-1 r 98.0 1.8E-06 6.3E-11 61.3 1.5 37 87-123 3-51 (68)
50 2l0b_A E3 ubiquitin-protein li 97.9 2E-06 6.7E-11 65.7 1.2 40 84-124 35-89 (91)
51 2ecm_A Ring finger and CHY zin 97.9 1.8E-06 6.3E-11 58.8 0.7 36 87-123 3-54 (55)
52 2ea5_A Cell growth regulator w 97.9 4.9E-06 1.7E-10 61.4 2.8 38 86-124 12-58 (68)
53 1x4j_A Ring finger protein 38; 97.9 2.9E-06 9.8E-11 61.8 1.4 38 86-124 20-72 (75)
54 2ep4_A Ring finger protein 24; 97.9 7E-06 2.4E-10 59.3 3.4 37 87-124 13-64 (74)
55 2kiz_A E3 ubiquitin-protein li 97.9 3.4E-06 1.2E-10 60.2 1.7 38 86-124 11-63 (69)
56 1iym_A EL5; ring-H2 finger, ub 97.9 3.4E-06 1.2E-10 57.6 1.4 36 87-123 3-54 (55)
57 1v87_A Deltex protein 2; ring- 97.7 1E-05 3.6E-10 62.9 2.4 35 89-124 25-94 (114)
58 2yho_A E3 ubiquitin-protein li 97.6 7.6E-06 2.6E-10 61.8 -0.2 35 89-124 18-61 (79)
59 2vje_A E3 ubiquitin-protein li 97.6 6.6E-06 2.2E-10 59.7 -1.1 43 86-131 5-62 (64)
60 2y1n_A E3 ubiquitin-protein li 97.5 1.6E-05 5.3E-10 77.2 0.2 38 89-127 332-382 (389)
61 2vje_B MDM4 protein; proto-onc 97.5 1.1E-05 3.6E-10 58.4 -1.1 41 88-131 6-61 (63)
62 3t6p_A Baculoviral IAP repeat- 97.4 2.6E-05 8.8E-10 73.9 0.2 36 88-124 294-338 (345)
63 2ecl_A Ring-box protein 2; RNF 97.3 6.3E-05 2.1E-09 56.4 1.2 42 84-125 10-77 (81)
64 1wim_A KIAA0161 protein; ring 97.1 4.3E-05 1.5E-09 58.2 -1.3 40 87-127 3-69 (94)
65 3dpl_R Ring-box protein 1; ubi 96.3 0.00036 1.2E-08 55.9 -1.3 38 86-123 34-100 (106)
66 4a0k_B E3 ubiquitin-protein li 96.1 0.00056 1.9E-08 56.1 -1.3 41 84-124 43-112 (117)
67 2d8s_A Cellular modulator of i 94.8 0.019 6.5E-07 43.7 3.2 40 85-125 11-71 (80)
68 2jun_A Midline-1; B-BOX, TRIM, 91.2 0.035 1.2E-06 42.3 -0.3 29 88-116 2-33 (101)
69 3k1l_B Fancl; UBC, ring, RWD, 89.6 0.17 5.7E-06 49.4 2.9 38 87-124 306-373 (381)
70 1vyx_A ORF K3, K3RING; zinc-bi 88.0 0.48 1.7E-05 34.1 3.7 38 86-124 3-59 (60)
71 3m62_A Ubiquitin conjugation f 83.7 0.22 7.6E-06 53.4 0.1 90 45-135 827-949 (968)
72 2ct0_A Non-SMC element 1 homol 81.9 0.47 1.6E-05 36.0 1.3 36 88-123 14-63 (74)
73 2dmd_A Zinc finger protein 64, 78.0 0.92 3.1E-05 32.2 1.7 40 85-124 4-76 (96)
74 2gmg_A Hypothetical protein PF 73.4 1.4 4.7E-05 36.3 1.7 26 98-123 63-95 (105)
75 2ee8_A Protein ODD-skipped-rel 70.7 4.3 0.00015 29.3 3.8 39 86-124 14-85 (106)
76 2yt9_A Zinc finger-containing 66.7 3.1 0.0001 29.4 2.2 15 86-100 4-18 (95)
77 2ctu_A Zinc finger protein 483 66.5 2.5 8.7E-05 28.1 1.7 37 85-124 14-51 (73)
78 2dlq_A GLI-kruppel family memb 62.6 4.8 0.00016 29.4 2.7 12 88-99 6-17 (124)
79 2d8v_A Zinc finger FYVE domain 59.3 2.1 7.3E-05 32.8 0.2 29 84-114 3-33 (67)
80 3i2d_A E3 SUMO-protein ligase 58.3 3.1 0.00011 40.4 1.2 44 86-129 246-305 (371)
81 2kmk_A Zinc finger protein GFI 57.8 3 0.0001 28.4 0.8 10 114-123 59-68 (82)
82 1wjp_A Zinc finger protein 295 57.6 5 0.00017 29.3 2.0 39 86-124 13-81 (107)
83 2csh_A Zinc finger protein 297 54.5 5.4 0.00018 29.0 1.7 38 86-124 7-77 (110)
84 3vk6_A E3 ubiquitin-protein li 54.4 2 6.8E-05 35.1 -0.7 32 92-124 4-49 (101)
85 3nw0_A Non-structural maintena 52.8 3.8 0.00013 36.7 0.8 36 88-123 179-228 (238)
86 1weo_A Cellulose synthase, cat 52.5 10 0.00035 30.6 3.2 38 87-124 14-70 (93)
87 2lt7_A Transcriptional regulat 48.7 4.5 0.00015 32.2 0.5 39 86-124 19-90 (133)
88 1vd4_A Transcription initiatio 48.4 9.5 0.00032 25.7 2.1 16 85-100 10-25 (62)
89 4fo9_A E3 SUMO-protein ligase 45.5 4.5 0.00015 39.1 0.1 45 85-129 211-271 (360)
90 1z2q_A LM5-1; membrane protein 45.1 12 0.0004 28.3 2.3 36 80-115 12-51 (84)
91 1wfe_A Riken cDNA 2310008M20 p 43.7 12 0.00042 29.2 2.3 25 88-112 24-51 (86)
92 2lce_A B-cell lymphoma 6 prote 43.4 8.1 0.00028 26.3 1.1 41 83-124 11-57 (74)
93 2kn9_A Rubredoxin; metalloprot 43.2 21 0.00073 27.9 3.6 14 87-100 25-38 (81)
94 2dmi_A Teashirt homolog 3; zin 42.3 39 0.0013 24.6 4.8 16 85-100 15-30 (115)
95 1x5w_A Zinc finger protein 64, 41.7 9.2 0.00032 25.7 1.2 39 85-124 5-49 (70)
96 2eps_A POZ-, at HOOK-, and zin 41.7 22 0.00077 22.9 3.1 17 84-100 7-23 (54)
97 1x4v_A Hypothetical protein LO 41.0 14 0.00049 27.5 2.2 23 90-112 13-38 (63)
98 2jmo_A Parkin; IBR, E3 ligase, 40.4 24 0.00081 26.4 3.4 26 89-114 25-63 (80)
99 2yw8_A RUN and FYVE domain-con 40.3 9.4 0.00032 28.7 1.1 35 81-115 11-49 (82)
100 3vth_A Hydrogenase maturation 40.2 7.2 0.00025 40.7 0.6 28 85-112 107-144 (761)
101 3uk3_C Zinc finger protein 217 39.0 7.4 0.00025 24.9 0.3 10 114-123 34-43 (57)
102 2ctd_A Zinc finger protein 512 38.5 18 0.00063 26.8 2.5 12 88-99 33-44 (96)
103 2d9h_A Zinc finger protein 692 38.2 11 0.00037 25.8 1.1 16 86-101 4-19 (78)
104 1x6e_A Zinc finger protein 24; 38.0 12 0.00041 25.3 1.3 39 85-124 10-54 (72)
105 1joc_A EEA1, early endosomal a 37.7 8.5 0.00029 31.3 0.6 35 81-115 61-99 (125)
106 3mjh_B Early endosome antigen 37.5 8.7 0.0003 25.6 0.5 13 89-101 5-17 (34)
107 4gzn_C ZFP-57, zinc finger pro 35.6 11 0.00036 26.5 0.7 11 114-124 34-44 (60)
108 1wfk_A Zinc finger, FYVE domai 35.3 13 0.00045 28.6 1.3 31 85-115 5-39 (88)
109 1wff_A Riken cDNA 2810002D23 p 34.4 11 0.00038 29.9 0.7 23 89-112 25-50 (85)
110 2i13_A AART; DNA binding, zinc 33.3 14 0.00048 29.5 1.1 8 90-97 78-85 (190)
111 3pwf_A Rubrerythrin; non heme 33.2 21 0.00073 30.4 2.3 27 87-121 136-162 (170)
112 3v2d_6 50S ribosomal protein L 33.1 6.8 0.00023 28.5 -0.7 10 113-122 38-47 (54)
113 2zjr_1 50S ribosomal protein L 33.0 11 0.00038 27.3 0.5 10 113-122 39-48 (55)
114 4g9i_A Hydrogenase maturation 32.1 6.7 0.00023 40.9 -1.2 27 86-112 103-139 (772)
115 1a1h_A QGSR zinc finger peptid 31.6 14 0.0005 25.4 0.9 10 114-123 64-73 (90)
116 1x4u_A Zinc finger, FYVE domai 31.4 19 0.00064 27.1 1.5 35 81-115 6-44 (84)
117 1lko_A Rubrerythrin all-iron(I 31.2 18 0.00062 31.0 1.6 25 88-121 154-180 (191)
118 2lv2_A Insulinoma-associated p 30.7 21 0.00072 26.6 1.7 40 84-124 23-68 (85)
119 3r8s_1 50S ribosomal protein L 30.5 9.3 0.00032 27.3 -0.3 10 113-122 35-44 (50)
120 3mpx_A FYVE, rhogef and PH dom 30.0 11 0.00037 34.8 0.0 33 83-115 369-405 (434)
121 2gqj_A Zinc finger protein KIA 29.8 13 0.00046 27.0 0.5 40 84-124 19-66 (98)
122 3ttc_A HYPF, transcriptional r 29.5 7.7 0.00026 39.9 -1.2 27 86-112 14-50 (657)
123 1wys_A Riken cDNA 2310008M20 p 29.2 15 0.00051 28.2 0.6 23 90-112 15-40 (75)
124 1x4w_A Hypothetical protein FL 28.4 14 0.00048 28.1 0.4 22 90-112 16-42 (67)
125 2wbt_A B-129; zinc finger; 2.7 27.9 24 0.00083 26.3 1.6 14 87-100 72-85 (129)
126 1y02_A CARP2, FYVE-ring finger 27.7 13 0.00045 30.6 0.1 29 85-113 15-47 (120)
127 2ct7_A Ring finger protein 31; 27.6 33 0.0011 25.8 2.3 25 91-115 27-57 (86)
128 1e8j_A Rubredoxin; iron-sulfur 27.4 45 0.0015 23.7 2.9 13 88-100 2-14 (52)
129 1bbo_A Human enhancer-binding 26.0 27 0.00094 22.0 1.4 10 114-123 31-40 (57)
130 1s24_A Rubredoxin 2; electron 26.0 40 0.0014 26.6 2.6 15 86-100 32-46 (87)
131 1wfh_A Zinc finger (AN1-like) 25.6 19 0.00064 27.2 0.6 23 89-112 15-39 (64)
132 2cot_A Zinc finger protein 435 25.2 25 0.00086 23.9 1.2 38 87-124 16-58 (77)
133 1z60_A TFIIH basal transcripti 25.2 28 0.00096 25.6 1.5 28 91-118 17-58 (59)
134 1nkw_1 50S ribosomal protein L 24.6 19 0.00065 28.4 0.5 10 113-122 66-75 (82)
135 1wfp_A Zinc finger (AN1-like) 24.6 43 0.0015 25.9 2.5 24 88-112 24-49 (74)
136 1yuz_A Nigerythrin; rubrythrin 24.1 41 0.0014 29.3 2.5 26 86-121 168-195 (202)
137 2els_A Zinc finger protein 406 23.9 37 0.0013 19.4 1.6 16 86-101 6-21 (36)
138 2ebt_A Krueppel-like factor 5; 23.7 49 0.0017 23.1 2.5 37 87-123 13-86 (100)
139 1tac_A TAT protein; transcript 23.1 1.2E+02 0.004 24.2 4.7 31 106-136 20-52 (86)
140 1wfl_A Zinc finger protein 216 22.8 22 0.00075 27.6 0.5 23 89-112 25-49 (74)
141 2elq_A Zinc finger protein 406 22.2 39 0.0013 19.3 1.4 15 86-100 6-20 (36)
142 2elr_A Zinc finger protein 406 22.1 41 0.0014 19.0 1.5 14 87-100 7-20 (36)
143 2elt_A Zinc finger protein 406 21.8 44 0.0015 18.9 1.6 15 86-100 6-20 (36)
144 2adr_A ADR1; transcription reg 20.7 39 0.0013 21.6 1.4 11 114-124 32-42 (60)
145 1p7a_A BF3, BKLF, kruppel-like 20.5 51 0.0018 18.8 1.8 15 87-101 9-23 (37)
146 2ftc_P Mitochondrial ribosomal 20.3 25 0.00085 25.1 0.3 10 113-122 37-46 (52)
147 2elv_A Zinc finger protein 406 20.3 47 0.0016 18.9 1.6 14 87-100 7-20 (36)
No 1
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.91 E-value=1.4e-10 Score=88.65 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=45.9
Q ss_pred CCCCCeeeeccccccccCCCCCCCCC-CCC-----------ccCcccccccccCCcccccccCCC
Q 036958 84 GNDGSFFDSNICLDLARDTPPPPPCD-LLC-----------KAIPSVRGWVTVKNVTPMYGCENS 136 (312)
Q Consensus 84 ~~~~e~f~CpICLDvfrDPVv~T~CG-lFC-----------k~CPvCR~~vs~~~L~Pnygl~ns 136 (312)
....+.|.|+||+++|+|||+ ++|| .|| ..||+|+..+....|+||+.+.+.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~ 72 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVR-LPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQ 72 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHH
T ss_pred hcCchheECcccCchhcCCeE-CCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHH
Confidence 344578999999999999999 9999 999 369999999999999999988553
No 2
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.87 E-value=2.6e-10 Score=90.19 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=46.0
Q ss_pred CCCCCeeeeccccccccCCCCCCCCC-CCC-----------ccCcccccccccCCcccccccCCC
Q 036958 84 GNDGSFFDSNICLDLARDTPPPPPCD-LLC-----------KAIPSVRGWVTVKNVTPMYGCENS 136 (312)
Q Consensus 84 ~~~~e~f~CpICLDvfrDPVv~T~CG-lFC-----------k~CPvCR~~vs~~~L~Pnygl~ns 136 (312)
....+.|.||||+++|+|||+ ++|| .|| ..||+|+..+....|+||+.+.+.
T Consensus 24 ~~~p~~~~CpI~~~~m~dPV~-~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~ 87 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLMTDPVR-LPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQ 87 (100)
T ss_dssp SSCSTTTBCTTTCSBCSSEEE-ETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHH
T ss_pred ccCcHhhCCcCccCcccCCeE-CCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHH
Confidence 344578999999999999999 9999 999 369999999999999999988653
No 3
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.85 E-value=2.4e-09 Score=78.02 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=43.0
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC---------c---------cCcccccccccCCcccccccCC
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC---------K---------AIPSVRGWVTVKNVTPMYGCEN 135 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC---------k---------~CPvCR~~vs~~~L~Pnygl~n 135 (312)
-.+.+.|+||++.|.+|++ ++|| .|| . .||+||..+....+.+|+.+.+
T Consensus 9 ~~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCCEETTTTEECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred cccCCCCcCCCcccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 3467999999999999999 9999 999 1 4999999999888999888754
No 4
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.84 E-value=3.8e-10 Score=82.75 Aligned_cols=50 Identities=20% Similarity=0.228 Sum_probs=44.3
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC------------ccCcccccccccCCcccccccCCC
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC------------KAIPSVRGWVTVKNVTPMYGCENS 136 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC------------k~CPvCR~~vs~~~L~Pnygl~ns 136 (312)
..+.|.|+||+++|.+||+ ++|| .|| ..||+|++.+....+.||+.+.+.
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~-~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~ 67 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVI-VSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSL 67 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEE-ETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHH
T ss_pred CcccCCCCCccccccCCEE-cCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHH
Confidence 3568999999999999999 9999 999 259999999998899999888653
No 5
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=3.6e-09 Score=77.15 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=43.2
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC-----------------ccCcccccccccCCcccccccCC
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC-----------------KAIPSVRGWVTVKNVTPMYGCEN 135 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC-----------------k~CPvCR~~vs~~~L~Pnygl~n 135 (312)
-.+.+.|+||++.+.+|++ ++|| .|| ..||+||..+....+.+++.+.+
T Consensus 16 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred ccCCCCCCCCCcccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 3467899999999999999 9999 999 14999999999988999888754
No 6
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.79 E-value=2.9e-09 Score=77.67 Aligned_cols=49 Identities=22% Similarity=0.394 Sum_probs=43.0
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC---------c--------cCcccccccccCCcccccccCC
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC---------K--------AIPSVRGWVTVKNVTPMYGCEN 135 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC---------k--------~CPvCR~~vs~~~L~Pnygl~n 135 (312)
..+.+.|+||++.+.+|++ ++|| .|| . .||+||..+....+.+++.+.+
T Consensus 16 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred CccCCCCcCCChhhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 3467899999999999999 9999 999 1 4999999999989999887754
No 7
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.76 E-value=8.6e-10 Score=95.57 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=44.9
Q ss_pred CCCCeeeeccccccccCCCCCCCCC-CCC------------ccCcccccccccCCcccccccCCC
Q 036958 85 NDGSFFDSNICLDLARDTPPPPPCD-LLC------------KAIPSVRGWVTVKNVTPMYGCENS 136 (312)
Q Consensus 85 ~~~e~f~CpICLDvfrDPVv~T~CG-lFC------------k~CPvCR~~vs~~~L~Pnygl~ns 136 (312)
.....|.|+||+++|+|||+ ++|| .|| ..||+|+..++...++||+.+.+.
T Consensus 204 ~~~~~~~c~i~~~~~~dPv~-~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~ 267 (281)
T 2c2l_A 204 DIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEV 267 (281)
T ss_dssp CCCSTTBCTTTCSBCSSEEE-CSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHH
T ss_pred CCCcccCCcCcCCHhcCCeE-CCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHH
Confidence 34478999999999999999 9999 999 249999999999999999888654
No 8
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.74 E-value=1.8e-09 Score=81.31 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=42.6
Q ss_pred CCCeeeeccccccccCCCCCCC-CC-CCC-------------ccCccccccc-ccCCcccccccCCC
Q 036958 86 DGSFFDSNICLDLARDTPPPPP-CD-LLC-------------KAIPSVRGWV-TVKNVTPMYGCENS 136 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~-CG-lFC-------------k~CPvCR~~v-s~~~L~Pnygl~ns 136 (312)
-.+.+.|+||+++|.+||+ ++ || .|| ..||+||..+ ....+.+|+.+.+-
T Consensus 10 ~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~ 75 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQA 75 (92)
T ss_dssp CCTTTEETTTTEECSSCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHH
T ss_pred CCcCCCCCCCChhhcCceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHH
Confidence 3567999999999999999 99 99 999 2699999997 56788888887553
No 9
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.73 E-value=1.6e-09 Score=85.47 Aligned_cols=51 Identities=18% Similarity=0.133 Sum_probs=45.3
Q ss_pred CCCCeeeeccccccccCCCCCCCCC--CCC-----------ccCcccccccccCCcccccccCCC
Q 036958 85 NDGSFFDSNICLDLARDTPPPPPCD--LLC-----------KAIPSVRGWVTVKNVTPMYGCENS 136 (312)
Q Consensus 85 ~~~e~f~CpICLDvfrDPVv~T~CG--lFC-----------k~CPvCR~~vs~~~L~Pnygl~ns 136 (312)
...++|.|+||+++|+|||+ ++|| .|| ..||+|++.+....|+||+.+.+.
T Consensus 18 ~~p~~~~CpI~~~~m~dPV~-~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~ 81 (98)
T 1wgm_A 18 DACDEFLDPIMSTLMCDPVV-LPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEK 81 (98)
T ss_dssp SCCTTTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHH
T ss_pred cCcHhcCCcCccccccCCeE-CCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHH
Confidence 34578999999999999999 9999 899 369999999999999999988654
No 10
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.65 E-value=3.2e-09 Score=75.89 Aligned_cols=46 Identities=22% Similarity=0.526 Sum_probs=40.9
Q ss_pred CCCCeeeeccccccccCC-------CCCCCCC-CCC-----------ccCcccccccccCCccccc
Q 036958 85 NDGSFFDSNICLDLARDT-------PPPPPCD-LLC-----------KAIPSVRGWVTVKNVTPMY 131 (312)
Q Consensus 85 ~~~e~f~CpICLDvfrDP-------Vv~T~CG-lFC-----------k~CPvCR~~vs~~~L~Pny 131 (312)
...+.+.|+||++.+.+| +. ++|| .|| ..||+||+.+....+.++|
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEE-CTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEe-CCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 345678999999999998 77 9999 999 4799999999999999987
No 11
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.62 E-value=3.4e-09 Score=82.34 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=42.3
Q ss_pred CeeeeccccccccCCCCCCCCC-CCC------------ccCcccccccccCCcccccccCC
Q 036958 88 SFFDSNICLDLARDTPPPPPCD-LLC------------KAIPSVRGWVTVKNVTPMYGCEN 135 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T~CG-lFC------------k~CPvCR~~vs~~~L~Pnygl~n 135 (312)
+.+.|+||+++|.+||.+++|| .|| ..||+||..+....+.+++.+.+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~ 81 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEE 81 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHH
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHH
Confidence 5789999999999999889999 999 26999999999888888876643
No 12
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=1.4e-08 Score=73.95 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=38.2
Q ss_pred CCeeeeccccccccCCCCCCCCC-CCC-----------ccCcccccccccCCccccc
Q 036958 87 GSFFDSNICLDLARDTPPPPPCD-LLC-----------KAIPSVRGWVTVKNVTPMY 131 (312)
Q Consensus 87 ~e~f~CpICLDvfrDPVv~T~CG-lFC-----------k~CPvCR~~vs~~~L~Pny 131 (312)
.+.+.|+||++.+.+|++.++|| .|| ..||+||+.+....+.++.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 46789999999999999833999 999 3699999999887776654
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=2.9e-08 Score=70.90 Aligned_cols=41 Identities=10% Similarity=0.220 Sum_probs=35.7
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC------------ccCcccccccccCCc
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC------------KAIPSVRGWVTVKNV 127 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC------------k~CPvCR~~vs~~~L 127 (312)
..+.+.|+||++.+++|++ ++|| .|| ..||+||+.+..+.|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQ-TECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSCCC-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCeeE-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 3468999999999999999 9999 999 259999999876654
No 14
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=7.2e-09 Score=82.16 Aligned_cols=48 Identities=10% Similarity=0.295 Sum_probs=42.2
Q ss_pred CeeeeccccccccCCCCCC-CCC-CCC---------ccCcccccccccCCcccccccCCC
Q 036958 88 SFFDSNICLDLARDTPPPP-PCD-LLC---------KAIPSVRGWVTVKNVTPMYGCENS 136 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T-~CG-lFC---------k~CPvCR~~vs~~~L~Pnygl~ns 136 (312)
+.+.|+||+++|.+||+ + +|| .|| ..||+||..+....+.+|+.+.+-
T Consensus 21 ~~~~C~IC~~~~~~pv~-~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~~~~~~n~~l~~l 79 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVC-LGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSM 79 (117)
T ss_dssp HTTSCSSSCSCCSSCBC-CCSSSCCBCTTTGGGGTTTBCSSSCCBCSCSSCCCCHHHHHH
T ss_pred hCCCCCCCChHhhCccE-eCCCCCHHHHHHHHHHhcCCCcCCCCcCccccccccHHHHHH
Confidence 46899999999999999 8 999 999 269999999988889998887553
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.59 E-value=3.7e-09 Score=73.83 Aligned_cols=44 Identities=25% Similarity=0.634 Sum_probs=39.3
Q ss_pred CCeeeeccccccccCC-------CCCCCCC-CCC-----------ccCcccccccccCCccccc
Q 036958 87 GSFFDSNICLDLARDT-------PPPPPCD-LLC-----------KAIPSVRGWVTVKNVTPMY 131 (312)
Q Consensus 87 ~e~f~CpICLDvfrDP-------Vv~T~CG-lFC-----------k~CPvCR~~vs~~~L~Pny 131 (312)
++.+.|+||++.+.+| +. ++|| .|| ..||+||+.+....+.++|
T Consensus 1 g~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 1 GAMVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp CCCCBCTTTCCBHHHHHHTTCCEEE-ETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCCCCCccChhhhCccccCCCEEe-CCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 4578999999999988 77 9999 999 3699999999999999887
No 16
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=4.3e-09 Score=81.45 Aligned_cols=49 Identities=10% Similarity=0.088 Sum_probs=42.9
Q ss_pred CCeeeeccccccccCCCCCCC-CC-CCC----------c-------cCcc--cccc-cccCCcccccccCCC
Q 036958 87 GSFFDSNICLDLARDTPPPPP-CD-LLC----------K-------AIPS--VRGW-VTVKNVTPMYGCENS 136 (312)
Q Consensus 87 ~e~f~CpICLDvfrDPVv~T~-CG-lFC----------k-------~CPv--CR~~-vs~~~L~Pnygl~ns 136 (312)
...|.||||+++|+|||+ ++ || .|| . .||+ |+.. +....|+||+.+.+.
T Consensus 5 ~~~~~CPI~~~~~~dPV~-~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~ 75 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVK-NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRA 75 (94)
T ss_dssp SSCCBCTTTCSBCSSEEE-ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHH
T ss_pred CcEeECcCcCchhcCCEE-cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHH
Confidence 468999999999999999 85 99 999 2 6999 9988 888899999988653
No 17
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.56 E-value=4.7e-09 Score=83.57 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=40.5
Q ss_pred CeeeeccccccccCCCCCCCCC-CCC------------ccCccccccccc-CCcccccccCC
Q 036958 88 SFFDSNICLDLARDTPPPPPCD-LLC------------KAIPSVRGWVTV-KNVTPMYGCEN 135 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T~CG-lFC------------k~CPvCR~~vs~-~~L~Pnygl~n 135 (312)
+.+.|+||+++|.+||+ ++|| .|| ..||+||..+.. ..+.+|+.+.+
T Consensus 51 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~ 111 (124)
T 3fl2_A 51 ETFQCICCQELVFRPIT-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQT 111 (124)
T ss_dssp HHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHH
T ss_pred cCCCCCcCChHHcCcEE-eeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHH
Confidence 56899999999999999 9999 999 279999999986 66777776644
No 18
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.55 E-value=2.6e-08 Score=76.81 Aligned_cols=47 Identities=21% Similarity=0.543 Sum_probs=41.2
Q ss_pred CeeeeccccccccCCCCCCCCC-CCC----------c----cCcccccccccCCcccccccCC
Q 036958 88 SFFDSNICLDLARDTPPPPPCD-LLC----------K----AIPSVRGWVTVKNVTPMYGCEN 135 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T~CG-lFC----------k----~CPvCR~~vs~~~L~Pnygl~n 135 (312)
+.+.|+||++.+.+|++ ++|| .|| . .||+||..+....+.+++.+.+
T Consensus 20 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~ 81 (112)
T 1jm7_A 20 KILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81 (112)
T ss_dssp HHTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSH
T ss_pred CCCCCcccChhhcCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHH
Confidence 46789999999999999 9999 999 1 5999999999888888877654
No 19
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.55 E-value=6.7e-09 Score=90.96 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=45.8
Q ss_pred CCCCCeeeeccccccccCCCCCCCCC-CCC------------ccCcccccccccCCcccccccCCC
Q 036958 84 GNDGSFFDSNICLDLARDTPPPPPCD-LLC------------KAIPSVRGWVTVKNVTPMYGCENS 136 (312)
Q Consensus 84 ~~~~e~f~CpICLDvfrDPVv~T~CG-lFC------------k~CPvCR~~vs~~~L~Pnygl~ns 136 (312)
..-.+.|.||||+++|+|||+ ++|| .|| ..||+|+..+....++||+.+.+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~-~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~ 165 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCI-TPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEV 165 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHH
T ss_pred cCCcHhhcccCccccCCCCeE-CCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHH
Confidence 344679999999999999999 9999 999 249999999999999999988654
No 20
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=1.2e-08 Score=75.53 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=36.6
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC-----------ccCcccccccccCCccccc
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC-----------KAIPSVRGWVTVKNVTPMY 131 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC-----------k~CPvCR~~vs~~~L~Pny 131 (312)
....+.|+||++.+.+||+ ++|| .|| ..||+||+.+. ..+.++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~ 67 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVV-TKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPAK 67 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEE-CTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECH
T ss_pred CCCCCCCcCCCchhcCeeE-ccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHH
Confidence 4467899999999999999 9999 999 36999999886 4455543
No 21
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.53 E-value=5.1e-09 Score=80.22 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=41.7
Q ss_pred CeeeeccccccccCCCCCC-CCC-CCC-----------ccCcccccccccCCcccccccCC
Q 036958 88 SFFDSNICLDLARDTPPPP-PCD-LLC-----------KAIPSVRGWVTVKNVTPMYGCEN 135 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T-~CG-lFC-----------k~CPvCR~~vs~~~L~Pnygl~n 135 (312)
+.+.|+||++.|.+||+ + +|| .|| ..||+||..+....+.+|+.+.+
T Consensus 21 ~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 80 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMI-IPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDE 80 (99)
T ss_dssp HHTBCTTTCSBCSSEEE-CTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHH
T ss_pred CCCCcccCChhhCCcCE-ECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHH
Confidence 57899999999999998 6 999 999 36999999999888999888765
No 22
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.51 E-value=5.7e-08 Score=68.51 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=33.3
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC--------ccCccccccccc
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC--------KAIPSVRGWVTV 124 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC--------k~CPvCR~~vs~ 124 (312)
..+.+.|+||++.|.+|++ ++|| .|| ..||+||+.+..
T Consensus 3 e~~~~~C~IC~~~~~~p~~-l~CgH~fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKCPKL-LPCLHTLCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp SCCCSSCSSSCSSCBCCSC-STTSCCSBTTTCSSSSSSCSSCCSSSSC
T ss_pred cccCCCceEeCCccCCeEE-cCCCCcccHHHHccCCCCCCcCCcEeec
Confidence 3567899999999999999 9999 999 369999998764
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.49 E-value=3.8e-08 Score=72.25 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=32.2
Q ss_pred CCCeeeeccccccccCCCCCCC-CC-CCC-------------ccCcccccccc
Q 036958 86 DGSFFDSNICLDLARDTPPPPP-CD-LLC-------------KAIPSVRGWVT 123 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~-CG-lFC-------------k~CPvCR~~vs 123 (312)
..+.+.|+||+++|.+||+ ++ || .|| ..||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhCCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3468999999999999999 99 99 999 26999999754
No 24
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=4.4e-08 Score=70.50 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=35.4
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC--------c------cCcccccccccCCc
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC--------K------AIPSVRGWVTVKNV 127 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC--------k------~CPvCR~~vs~~~L 127 (312)
..+.+.|+||++.+.+|++ ++|| .|| . .||+||+.+....+
T Consensus 17 ~~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3467899999999999999 9999 999 2 59999998876554
No 25
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.48 E-value=1.8e-08 Score=71.82 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=37.9
Q ss_pred Ceeeeccccc-cccCCC----CCCCCC-CCC------------ccCcccccccccCCcccccc
Q 036958 88 SFFDSNICLD-LARDTP----PPPPCD-LLC------------KAIPSVRGWVTVKNVTPMYG 132 (312)
Q Consensus 88 e~f~CpICLD-vfrDPV----v~T~CG-lFC------------k~CPvCR~~vs~~~L~Pnyg 132 (312)
+++.|+||++ ++.+|+ + ++|| .|| ..||+||+.+....+.+++.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMV-NVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEE-CTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEECC
T ss_pred CCCcCCcCCCCccCCCccCeec-CCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeecc
Confidence 4678999999 999994 6 8999 999 25999999999888888653
No 26
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.44 E-value=2.1e-08 Score=83.96 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=40.7
Q ss_pred CeeeeccccccccCCCCCCCCC-CCC------------ccCcccccccccC-CcccccccCC
Q 036958 88 SFFDSNICLDLARDTPPPPPCD-LLC------------KAIPSVRGWVTVK-NVTPMYGCEN 135 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T~CG-lFC------------k~CPvCR~~vs~~-~L~Pnygl~n 135 (312)
+.+.|+||+++|.+||+ ++|| .|| ..||+||..+... .+.+|+.+.+
T Consensus 77 ~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~ 137 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVT-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQT 137 (150)
T ss_dssp HHTBCTTTSSBCSSEEE-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHH
T ss_pred cCCEeecCChhhcCCEE-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHH
Confidence 46899999999999999 9999 999 2699999999877 7778777654
No 27
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=2.2e-08 Score=72.62 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=34.8
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC-----------ccCcccccccccCC
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC-----------KAIPSVRGWVTVKN 126 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC-----------k~CPvCR~~vs~~~ 126 (312)
..+.+.|+||++.+.+||. ++|| .|| ..||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVS-LPCKHVFCYLCVKGASWLGKRCALCRQEIPEDF 63 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEE-ETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred CCCCCCCccCCcccCCCEE-ccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence 4567899999999999999 9999 999 36999999887554
No 28
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.39 E-value=1.9e-08 Score=78.29 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=37.0
Q ss_pred CeeeeccccccccCCCCCC-CCC-CCC-----------ccCcccccccccC----Cccccccc
Q 036958 88 SFFDSNICLDLARDTPPPP-PCD-LLC-----------KAIPSVRGWVTVK----NVTPMYGC 133 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T-~CG-lFC-----------k~CPvCR~~vs~~----~L~Pnygl 133 (312)
+.+.|+||+++|.+||+ + +|| .|| ..||+||..+... .+.+++.+
T Consensus 14 ~~~~C~IC~~~~~~p~~-~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l 75 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATT-IIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTL 75 (108)
T ss_dssp GGTBCTTTSSBCSSEEE-ETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHH
T ss_pred CcCCCccCChHHhCcCE-eCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHH
Confidence 57899999999999999 6 999 999 3699999988765 45555444
No 29
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.35 E-value=4.6e-08 Score=91.04 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=48.4
Q ss_pred cccCCCCCCCeeeeccccccccCCCCCCCCC-CCC-------------ccCcc--cccccccCCcccccccCCC
Q 036958 79 DEKGNGNDGSFFDSNICLDLARDTPPPPPCD-LLC-------------KAIPS--VRGWVTVKNVTPMYGCENS 136 (312)
Q Consensus 79 ~ek~~~~~~e~f~CpICLDvfrDPVv~T~CG-lFC-------------k~CPv--CR~~vs~~~L~Pnygl~ns 136 (312)
.+-..+.....|.||||+++|++||+.+.|| +|| ..||+ |++.+....|.|++.+.+-
T Consensus 171 DDI~v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~l 244 (267)
T 3htk_C 171 DDLQIEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELR 244 (267)
T ss_dssp SCCCCCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHH
T ss_pred ccceecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHH
Confidence 3444555678999999999999999845999 999 15999 9999999999999988653
No 30
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.34 E-value=4e-08 Score=80.04 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=32.0
Q ss_pred CeeeeccccccccCCCCCCCCC-CCC-----------ccCccccccccc
Q 036958 88 SFFDSNICLDLARDTPPPPPCD-LLC-----------KAIPSVRGWVTV 124 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T~CG-lFC-----------k~CPvCR~~vs~ 124 (312)
+.+.|+||++.|.+||+ ++|| .|| ..||+||+.+..
T Consensus 52 ~~~~C~iC~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVT-LNCAHSFCSYCINEWMKRKIECPICRKDIKS 99 (138)
T ss_dssp HHSBCTTTCSBCSSEEE-ETTSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred ccCCCcccCcccCCceE-CCCCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 35789999999999999 9999 999 369999998754
No 31
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.34 E-value=7.2e-08 Score=76.49 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=41.7
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC-----------c-cCcccccccccCCcccccccCC
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC-----------K-AIPSVRGWVTVKNVTPMYGCEN 135 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC-----------k-~CPvCR~~vs~~~L~Pnygl~n 135 (312)
-.+.+.|+||++++.+||+ ++|| .|| . .||+||..+....+.++..+.+
T Consensus 15 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~ 76 (118)
T 3hct_A 15 LESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKR 76 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHH
T ss_pred CCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHH
Confidence 4567999999999999999 9999 999 2 7999999998887777665533
No 32
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.30 E-value=6.8e-08 Score=75.30 Aligned_cols=48 Identities=21% Similarity=0.466 Sum_probs=42.0
Q ss_pred CCeeeeccccccccCC-------CCCCCCC-CCC-----------ccCcccccccccCCcccccccCC
Q 036958 87 GSFFDSNICLDLARDT-------PPPPPCD-LLC-----------KAIPSVRGWVTVKNVTPMYGCEN 135 (312)
Q Consensus 87 ~e~f~CpICLDvfrDP-------Vv~T~CG-lFC-----------k~CPvCR~~vs~~~L~Pnygl~n 135 (312)
.+.+.|+||++.|.+| ++ ++|| .|| ..||+||+.+....+.++|....
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~~ 71 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGSG 71 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEE-ETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSSS
T ss_pred CCCCCCcccChhhhCccccccCeEe-cCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccCCC
Confidence 4678999999999999 88 9999 999 37999999999998888876543
No 33
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=2.2e-07 Score=68.64 Aligned_cols=40 Identities=13% Similarity=0.341 Sum_probs=34.2
Q ss_pred CCCeeeeccccccccC----CCCCCCCC-CCC----------c----cCcccccccccCC
Q 036958 86 DGSFFDSNICLDLARD----TPPPPPCD-LLC----------K----AIPSVRGWVTVKN 126 (312)
Q Consensus 86 ~~e~f~CpICLDvfrD----PVv~T~CG-lFC----------k----~CPvCR~~vs~~~ 126 (312)
..+.+.|+||++.|.+ |++ ++|| .|| . .||+||+.+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKL-LHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEE-CSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred ccCCCCCccCCccccccCCCeEE-CCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 4467899999999999 999 9999 999 1 5999999887643
No 34
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.28 E-value=9.2e-08 Score=75.12 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=36.5
Q ss_pred CeeeeccccccccCCCCCCCCC-CCC------------ccCcccccccccCCcccc
Q 036958 88 SFFDSNICLDLARDTPPPPPCD-LLC------------KAIPSVRGWVTVKNVTPM 130 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T~CG-lFC------------k~CPvCR~~vs~~~L~Pn 130 (312)
+.+.|+||++++.+||+ ++|| .|| ..||+||..+....+.++
T Consensus 22 ~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 76 (116)
T 1rmd_A 22 KSISCQICEHILADPVE-TSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESP 76 (116)
T ss_dssp HHTBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCC
T ss_pred CCCCCCCCCcHhcCcEE-cCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcccc
Confidence 47899999999999999 9999 999 269999999987766543
No 35
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.27 E-value=5e-08 Score=81.10 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=39.3
Q ss_pred CCeeeeccccccccCCCCCCCCC-CCC------------ccCcccccccc-cCCcccccccCC
Q 036958 87 GSFFDSNICLDLARDTPPPPPCD-LLC------------KAIPSVRGWVT-VKNVTPMYGCEN 135 (312)
Q Consensus 87 ~e~f~CpICLDvfrDPVv~T~CG-lFC------------k~CPvCR~~vs-~~~L~Pnygl~n 135 (312)
.+.+.|+||++.|.+||+.++|| .|| ..||+||..+. ...+.|++.+.+
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~ 114 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDA 114 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHH
T ss_pred CCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHH
Confidence 45789999999999999833999 999 25999999984 456777766643
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.26 E-value=1.4e-07 Score=73.95 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=33.5
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC------------ccCccccccccc
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC------------KAIPSVRGWVTV 124 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC------------k~CPvCR~~vs~ 124 (312)
..+.+.|+||+++|.+||+ ++|| .|| ..||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVT-LPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEE-CTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeE-cCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4457999999999999999 9999 999 269999998864
No 37
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.24 E-value=4.7e-07 Score=66.16 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=36.1
Q ss_pred CCCeeeeccccccccCCCC--CCCCC-CCC-----------ccCcccccccccCCcccc
Q 036958 86 DGSFFDSNICLDLARDTPP--PPPCD-LLC-----------KAIPSVRGWVTVKNVTPM 130 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv--~T~CG-lFC-----------k~CPvCR~~vs~~~L~Pn 130 (312)
....+.|+||++.|.++.. .++|| .|| ..||+||+.+....+.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCC
Confidence 4567899999999987743 16999 999 369999999987766654
No 38
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=1.7e-07 Score=66.18 Aligned_cols=38 Identities=18% Similarity=0.459 Sum_probs=32.7
Q ss_pred CCCeeeeccccccccCC-------CCCCCCC-CCC-----------ccCccccccccc
Q 036958 86 DGSFFDSNICLDLARDT-------PPPPPCD-LLC-----------KAIPSVRGWVTV 124 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDP-------Vv~T~CG-lFC-----------k~CPvCR~~vs~ 124 (312)
..+.+.|+||++.+.+| ++ ++|| .|| ..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEE-CSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEe-CCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 45678999999999988 77 9999 999 369999998754
No 39
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.21 E-value=1e-06 Score=66.97 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=32.7
Q ss_pred CCCeeeecccccccc--CCCCCCC--CC-CCC------------ccCcccccccccCCc
Q 036958 86 DGSFFDSNICLDLAR--DTPPPPP--CD-LLC------------KAIPSVRGWVTVKNV 127 (312)
Q Consensus 86 ~~e~f~CpICLDvfr--DPVv~T~--CG-lFC------------k~CPvCR~~vs~~~L 127 (312)
..+.+.|+||++.+. ++++ .+ || .|| ..||+||+.+....+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~-~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINF-FPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTC-CSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccc-cccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 456899999999884 5555 66 99 999 269999999987654
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.19 E-value=1.2e-07 Score=73.89 Aligned_cols=46 Identities=22% Similarity=0.497 Sum_probs=40.8
Q ss_pred CCCeeeeccccccccCC-------CCCCCCC-CCC-----------ccCcccccccccCCcccccc
Q 036958 86 DGSFFDSNICLDLARDT-------PPPPPCD-LLC-----------KAIPSVRGWVTVKNVTPMYG 132 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDP-------Vv~T~CG-lFC-----------k~CPvCR~~vs~~~L~Pnyg 132 (312)
..+.+.|+||++.+.+| +. +.|| .|| +.||+||..+..++++|+|.
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEE-ETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCCccccccccCcceEe-CCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 35678899999999987 77 9999 999 57999999999999999883
No 41
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.18 E-value=2.5e-07 Score=77.05 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=41.1
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC------------ccCcccccccccCCcccccccC
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC------------KAIPSVRGWVTVKNVTPMYGCE 134 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC------------k~CPvCR~~vs~~~L~Pnygl~ 134 (312)
-.+.|.|+||+++|.+||+ ++|| .|| ..||+||..+....+.|+....
T Consensus 15 ~~~~~~C~IC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~ 75 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAK 75 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHH
T ss_pred CCCCCCCCCCChhhcCcEE-CCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHH
Confidence 4568999999999999999 9999 999 2799999999887777765543
No 42
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=4.2e-07 Score=65.16 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=33.5
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC-----------ccCcccccccccCCc
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC-----------KAIPSVRGWVTVKNV 127 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC-----------k~CPvCR~~vs~~~L 127 (312)
..+.+.|+||++.+.+ ++ ++|| .|| ..||+||+.+.....
T Consensus 12 ~~~~~~C~IC~~~~~~-~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LI-LPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EE-ETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred CCCCCCCeeCCcCccC-cc-cCCCCcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 3457899999999999 88 9999 999 369999998875543
No 43
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=5.6e-07 Score=66.48 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=32.3
Q ss_pred CeeeeccccccccCCCCCCCCC-C-CC-------ccCccccccccc
Q 036958 88 SFFDSNICLDLARDTPPPPPCD-L-LC-------KAIPSVRGWVTV 124 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T~CG-l-FC-------k~CPvCR~~vs~ 124 (312)
+.+.|+||++.+.+||. ++|| . || ..||+||+.+..
T Consensus 24 ~~~~C~IC~~~~~~~~~-~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAVDKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSCCCBCC-SSSCCCCBCHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcCCCCCCCEEE-ecCCCHHHHHHHhhCCCCCccCCceecC
Confidence 46789999999999999 9999 8 99 579999998864
No 44
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=9.7e-07 Score=62.24 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=24.0
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC 112 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC 112 (312)
..+.+.|+||++.+.+||+ ++|| .||
T Consensus 17 ~~~~~~C~IC~~~~~~p~~-~~CgH~fC 43 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVT-IDCGHNFC 43 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEE-CTTSSEEC
T ss_pred CccCCCCCcCCchhCCeEE-eCCCCcch
Confidence 4567899999999999999 9999 999
No 45
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=1.9e-06 Score=59.21 Aligned_cols=25 Identities=16% Similarity=0.448 Sum_probs=23.4
Q ss_pred CCeeeeccccccccCCCCCCCCC-CCC
Q 036958 87 GSFFDSNICLDLARDTPPPPPCD-LLC 112 (312)
Q Consensus 87 ~e~f~CpICLDvfrDPVv~T~CG-lFC 112 (312)
.+.+.|+||++.+++|++ ++|| .||
T Consensus 13 ~~~~~C~IC~~~~~~p~~-~~CgH~fC 38 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVI-IECGHNFC 38 (58)
T ss_dssp CCCCBCSSSCCBCSSCCC-CSSCCCCC
T ss_pred ccCCCCccCCcccCccEe-CCCCCccC
Confidence 457899999999999999 9999 999
No 46
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.06 E-value=3.4e-07 Score=76.03 Aligned_cols=37 Identities=11% Similarity=0.162 Sum_probs=32.6
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC------------ccCcccccccc
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC------------KAIPSVRGWVT 123 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC------------k~CPvCR~~vs 123 (312)
-.+.|.|+||+++|++||+ +.|| .|| ..||+||..+.
T Consensus 28 l~~~~~C~IC~~~~~~pv~-~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQ-AQCGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CCcCcCCCCCChhhcCcEE-CCCCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4578999999999999999 9999 999 26999998753
No 47
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.05 E-value=1.1e-07 Score=70.41 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=32.2
Q ss_pred CeeeeccccccccCCCCCCCCC-C-CC-------ccCccccccccc
Q 036958 88 SFFDSNICLDLARDTPPPPPCD-L-LC-------KAIPSVRGWVTV 124 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T~CG-l-FC-------k~CPvCR~~vs~ 124 (312)
+.+.|+||++.+.+||. ++|| . || ..||+||+.+..
T Consensus 23 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVF-VPCGHLVTCKQCAEAVDKCPMCYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSBCCEEE-ETTCCBCCCHHHHTTCSBCTTTCCBCSE
T ss_pred cCCCCCCCCCCCCCEEE-cCCCChhHHHHhhhcCccCCCcCcCccC
Confidence 46789999999999999 9999 8 99 479999998864
No 48
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.04 E-value=6.3e-07 Score=65.43 Aligned_cols=44 Identities=9% Similarity=0.075 Sum_probs=38.8
Q ss_pred CeeeeccccccccCCCCCC-CCC-CCC-----------ccCcccccccccCCcccccc
Q 036958 88 SFFDSNICLDLARDTPPPP-PCD-LLC-----------KAIPSVRGWVTVKNVTPMYG 132 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T-~CG-lFC-----------k~CPvCR~~vs~~~L~Pnyg 132 (312)
-.|.|+||+++++|||+ + .|| .|| ..||++++.+....|+|++.
T Consensus 2 ~~~~CpIs~~~m~dPV~-~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 2 SHMLCAISGKVPRRPVL-SPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp --CCCTTTCSCCSSEEE-ETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred CeEEecCCCCCCCCCEE-eCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 46899999999999999 8 999 999 36999999999999999864
No 49
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.97 E-value=1.8e-06 Score=61.32 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=30.8
Q ss_pred CCeeeeccccccccCCCCCCCCC-CCC-----------ccCcccccccc
Q 036958 87 GSFFDSNICLDLARDTPPPPPCD-LLC-----------KAIPSVRGWVT 123 (312)
Q Consensus 87 ~e~f~CpICLDvfrDPVv~T~CG-lFC-----------k~CPvCR~~vs 123 (312)
.....|+||++.+.+|++.++|| .|| ..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence 34678999999999984339999 999 36999999876
No 50
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.94 E-value=2e-06 Score=65.65 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=32.9
Q ss_pred CCCCCeeeeccccccccC---CCCCCCCC-CCC-----------ccCccccccccc
Q 036958 84 GNDGSFFDSNICLDLARD---TPPPPPCD-LLC-----------KAIPSVRGWVTV 124 (312)
Q Consensus 84 ~~~~e~f~CpICLDvfrD---PVv~T~CG-lFC-----------k~CPvCR~~vs~ 124 (312)
...+....|+||++.|.+ ++. ++|| .|| ..||+||+.+..
T Consensus 35 ~~~~~~~~C~IC~~~~~~~~~~~~-l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 35 GAVGQEMCCPICCSEYVKGDVATE-LPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSSCSEETTTTEECCTTCEEEE-ETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cccCCCCCCcccChhhcCCCcEEe-cCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 345578899999999887 777 9999 999 369999987753
No 51
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.92 E-value=1.8e-06 Score=58.82 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=29.8
Q ss_pred CCeeeeccccccccC----CCCCCCCC-CCC-----------ccCcccccccc
Q 036958 87 GSFFDSNICLDLARD----TPPPPPCD-LLC-----------KAIPSVRGWVT 123 (312)
Q Consensus 87 ~e~f~CpICLDvfrD----PVv~T~CG-lFC-----------k~CPvCR~~vs 123 (312)
.+.+.|+||++.+.+ +++ ++|| .|| ..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHV-LPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEE-CTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEe-cCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 356889999999866 667 9999 999 36999998764
No 52
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=4.9e-06 Score=61.40 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=33.0
Q ss_pred CCCeeeeccccccccCCCCCCCCC-C-CC-------ccCccccccccc
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-L-LC-------KAIPSVRGWVTV 124 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-l-FC-------k~CPvCR~~vs~ 124 (312)
..+...|.||++.++++|. ++|| + || +.||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVL-LPCRHTCLCDGCVKYFQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEE-TTTTBCCSCTTHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEE-ECCCChhhhHHHHhcCCCCCCCCcchhc
Confidence 3456789999999999999 9999 7 99 579999998864
No 53
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.90 E-value=2.9e-06 Score=61.85 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=31.7
Q ss_pred CCCeeeeccccccccCC---CCCCCCC-CCC-----------ccCccccccccc
Q 036958 86 DGSFFDSNICLDLARDT---PPPPPCD-LLC-----------KAIPSVRGWVTV 124 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDP---Vv~T~CG-lFC-----------k~CPvCR~~vs~ 124 (312)
..+...|+||++.|.++ +. ++|| .|| ..||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~-l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRV-LPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEE-ETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEE-ECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 44678999999999888 66 8999 999 369999987754
No 54
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=7e-06 Score=59.34 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=31.2
Q ss_pred CCeeeeccccccccCCCCCC---CCC-CCC-----------ccCccccccccc
Q 036958 87 GSFFDSNICLDLARDTPPPP---PCD-LLC-----------KAIPSVRGWVTV 124 (312)
Q Consensus 87 ~e~f~CpICLDvfrDPVv~T---~CG-lFC-----------k~CPvCR~~vs~ 124 (312)
.....|+||++.|.++.. + +|| .|| ..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~-~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDE-LGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCSCBCSSSCCBCCSSSC-EEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred CCCCCCcCCCcccCCCCc-EEEcCCCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence 456789999999998877 6 999 999 469999997753
No 55
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.89 E-value=3.4e-06 Score=60.24 Aligned_cols=38 Identities=26% Similarity=0.420 Sum_probs=30.6
Q ss_pred CCCeeeecccccccc---CCCCCCCCC-CCC-----------ccCccccccccc
Q 036958 86 DGSFFDSNICLDLAR---DTPPPPPCD-LLC-----------KAIPSVRGWVTV 124 (312)
Q Consensus 86 ~~e~f~CpICLDvfr---DPVv~T~CG-lFC-----------k~CPvCR~~vs~ 124 (312)
......|+||++.|. .++. ++|| .|| ..||+||+.+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~-~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRR-LPCMHLFHQVCVDQWLITNKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEE-CTTSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEE-eCCCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence 456789999999874 4566 9999 999 469999998764
No 56
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.88 E-value=3.4e-06 Score=57.61 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=29.4
Q ss_pred CCeeeeccccccccC---CCCCCC-CC-CCC-----------ccCcccccccc
Q 036958 87 GSFFDSNICLDLARD---TPPPPP-CD-LLC-----------KAIPSVRGWVT 123 (312)
Q Consensus 87 ~e~f~CpICLDvfrD---PVv~T~-CG-lFC-----------k~CPvCR~~vs 123 (312)
.+...|+||++.+.+ ++. ++ || .|| ..||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~-~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARF-LPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEE-CSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEE-CCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 356789999999987 676 65 99 999 36999998764
No 57
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.75 E-value=1e-05 Score=62.86 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=29.6
Q ss_pred eeeeccccccccCCC------------------CCCCCC-CCC----------------ccCccccccccc
Q 036958 89 FFDSNICLDLARDTP------------------PPPPCD-LLC----------------KAIPSVRGWVTV 124 (312)
Q Consensus 89 ~f~CpICLDvfrDPV------------------v~T~CG-lFC----------------k~CPvCR~~vs~ 124 (312)
...|+||++.|.+|+ . ++|| .|| ..||+||+.+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRL-TKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEE-SSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceec-CCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999999998876 5 8999 999 159999998764
No 58
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.61 E-value=7.6e-06 Score=61.81 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=31.4
Q ss_pred eeeeccccccccCCCCCCCCC-C-CC-------ccCccccccccc
Q 036958 89 FFDSNICLDLARDTPPPPPCD-L-LC-------KAIPSVRGWVTV 124 (312)
Q Consensus 89 ~f~CpICLDvfrDPVv~T~CG-l-FC-------k~CPvCR~~vs~ 124 (312)
...|.||++.+.+||. ++|| . || +.||+||+.+..
T Consensus 18 ~~~C~IC~~~~~~~v~-~pCgH~~~C~~C~~~~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTF-CPCGHTVCCESCAAQLQSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEE-ETTCBCCBCHHHHTTCSBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEE-ECCCCHHHHHHHHHhcCcCCCCCchhhC
Confidence 4589999999999999 9999 7 99 479999998875
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.57 E-value=6.6e-06 Score=59.67 Aligned_cols=43 Identities=19% Similarity=0.235 Sum_probs=33.9
Q ss_pred CCCeeeeccccccccCCCCCC--CCC-C-CC-----------ccCcccccccccCCccccc
Q 036958 86 DGSFFDSNICLDLARDTPPPP--PCD-L-LC-----------KAIPSVRGWVTVKNVTPMY 131 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T--~CG-l-FC-----------k~CPvCR~~vs~~~L~Pny 131 (312)
..+...|.||++.+++++. + +|| . || +.||+||+.+. .++.+|
T Consensus 5 ~~~~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i~ 62 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCI-VHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ--MIVLTY 62 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEE-EETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC--EEEEEE
T ss_pred CCCcCCCCcCCCCCCCEEE-ECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh--ceEeee
Confidence 3456689999999999997 7 999 7 89 25999999885 344444
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.49 E-value=1.6e-05 Score=77.16 Aligned_cols=38 Identities=26% Similarity=0.522 Sum_probs=33.3
Q ss_pred eeeeccccccccCCCCCCCCC-CCC------------ccCcccccccccCCc
Q 036958 89 FFDSNICLDLARDTPPPPPCD-LLC------------KAIPSVRGWVTVKNV 127 (312)
Q Consensus 89 ~f~CpICLDvfrDPVv~T~CG-lFC------------k~CPvCR~~vs~~~L 127 (312)
...|+||++.+.+||. ++|| .|| ..||+||+.+....+
T Consensus 332 ~~~C~ICle~~~~pv~-lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKDVKI-EPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCCEEE-ETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCCeEE-eCCCChhhHHHHHHHHhcCCCCCCCCCCccCCcee
Confidence 4799999999999999 9999 999 369999998876543
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.46 E-value=1.1e-05 Score=58.40 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=32.9
Q ss_pred CeeeeccccccccCCCCCC--CCC-C-CC-----------ccCcccccccccCCccccc
Q 036958 88 SFFDSNICLDLARDTPPPP--PCD-L-LC-----------KAIPSVRGWVTVKNVTPMY 131 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T--~CG-l-FC-----------k~CPvCR~~vs~~~L~Pny 131 (312)
....|.||++.++++++ + +|| + || +.||+||+.+. .++.+|
T Consensus 6 ~~~~C~IC~~~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~--~~i~i~ 61 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNI-IHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ--LVIKVF 61 (63)
T ss_dssp GGSBCTTTSSSBSCEEE-EETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC--EEEEEE
T ss_pred cCCCCcccCCcCCCeEE-EecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh--ceEEEe
Confidence 45689999999999987 7 999 7 99 27999999885 344444
No 62
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.38 E-value=2.6e-05 Score=73.88 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=32.1
Q ss_pred CeeeeccccccccCCCCCCCCC-C-CC-------ccCccccccccc
Q 036958 88 SFFDSNICLDLARDTPPPPPCD-L-LC-------KAIPSVRGWVTV 124 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T~CG-l-FC-------k~CPvCR~~vs~ 124 (312)
+.+.|+||++.+.+||. ++|| . || ..||+||..+..
T Consensus 294 ~~~~C~IC~~~~~~~v~-lpCgH~~fC~~C~~~~~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVF-IPCGHLVVCQECAPSLRKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEE-ETTCCEEECTTTGGGCSBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEE-cCCCChhHhHHHHhcCCcCCCCCCCccC
Confidence 45899999999999999 9999 8 99 479999998864
No 63
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.28 E-value=6.3e-05 Score=56.39 Aligned_cols=42 Identities=17% Similarity=0.075 Sum_probs=31.0
Q ss_pred CCCCCeeeeccccccccCC--------------CCCCCCC-CCC-----------ccCcccccccccC
Q 036958 84 GNDGSFFDSNICLDLARDT--------------PPPPPCD-LLC-----------KAIPSVRGWVTVK 125 (312)
Q Consensus 84 ~~~~e~f~CpICLDvfrDP--------------Vv~T~CG-lFC-----------k~CPvCR~~vs~~ 125 (312)
..+.+.-.|+||++.|.++ ++-+.|| .|+ ..||+||+.+...
T Consensus 10 ~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 10 SWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred eecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 3344567799999999874 3413599 999 3699999987644
No 64
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.10 E-value=4.3e-05 Score=58.20 Aligned_cols=40 Identities=13% Similarity=0.316 Sum_probs=31.8
Q ss_pred CCeeeeccccccccCCCCCC---CCC-CCC-------------------ccCcc--cccc--cccCCc
Q 036958 87 GSFFDSNICLDLARDTPPPP---PCD-LLC-------------------KAIPS--VRGW--VTVKNV 127 (312)
Q Consensus 87 ~e~f~CpICLDvfrDPVv~T---~CG-lFC-------------------k~CPv--CR~~--vs~~~L 127 (312)
.+.++|+||++.+.+|+. + +|| .|| ..||. |+.. +....+
T Consensus 3 ~~~~~C~IC~~~~~~~~~-~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i 69 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQM-TTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI 69 (94)
T ss_dssp CSBCCCSSSCCCCBGGGE-EEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred CCCcCCcccCcccccccc-eEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence 358899999999999976 4 799 999 15999 9988 554433
No 65
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=96.34 E-value=0.00036 Score=55.87 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=29.5
Q ss_pred CCCeeeeccccccccCC-----------------CCCCCCC-CCC-----------ccCcccccccc
Q 036958 86 DGSFFDSNICLDLARDT-----------------PPPPPCD-LLC-----------KAIPSVRGWVT 123 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDP-----------------Vv~T~CG-lFC-----------k~CPvCR~~vs 123 (312)
+.+.-.|.||++.|.++ ++.++|| .|+ ..||+||+.+.
T Consensus 34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 33456799999999876 2227899 999 36999999864
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.11 E-value=0.00056 Score=56.11 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=2.6
Q ss_pred CCCCCeeeeccccccccCC-----------------CCCCCCC-CCC-----------ccCccccccccc
Q 036958 84 GNDGSFFDSNICLDLARDT-----------------PPPPPCD-LLC-----------KAIPSVRGWVTV 124 (312)
Q Consensus 84 ~~~~e~f~CpICLDvfrDP-----------------Vv~T~CG-lFC-----------k~CPvCR~~vs~ 124 (312)
..+...-.|.||++.|.++ ++.++|| .|+ ..||+||+.+..
T Consensus 43 ~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 43 AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp EECCCC----------------------------------------------------------------
T ss_pred eecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 3344456899999998874 3325899 999 369999998653
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.79 E-value=0.019 Score=43.72 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=29.6
Q ss_pred CCCCeeeeccccccc--cCCCCCCCC-----C-CCC-------------ccCcccccccccC
Q 036958 85 NDGSFFDSNICLDLA--RDTPPPPPC-----D-LLC-------------KAIPSVRGWVTVK 125 (312)
Q Consensus 85 ~~~e~f~CpICLDvf--rDPVv~T~C-----G-lFC-------------k~CPvCR~~vs~~ 125 (312)
...+...|.||++-| .++++ ++| + .|. ..||+||..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~l~-~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 11 TPSSQDICRICHCEGDDESPLI-TPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CCTTSCCCSSSCCCCCSSSCEE-CSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCCeEcCccccCCCeeE-eccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 344567899999876 46888 999 3 554 2699999988643
No 68
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.20 E-value=0.035 Score=42.28 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=22.1
Q ss_pred Ceeeeccccc-cccCCCC-CCCCC-CCCccCc
Q 036958 88 SFFDSNICLD-LARDTPP-PPPCD-LLCKAIP 116 (312)
Q Consensus 88 e~f~CpICLD-vfrDPVv-~T~CG-lFCk~CP 116 (312)
+++.|+||.+ ++.+||. |+.|+ .||..|-
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl 33 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECL 33 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHH
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHC
Confidence 4578999996 5788875 58899 9986543
No 69
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=89.63 E-value=0.17 Score=49.45 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=27.3
Q ss_pred CCeeeeccccccccC----CC-CCC--CCC-CCC----------------------ccCccccccccc
Q 036958 87 GSFFDSNICLDLARD----TP-PPP--PCD-LLC----------------------KAIPSVRGWVTV 124 (312)
Q Consensus 87 ~e~f~CpICLDvfrD----PV-v~T--~CG-lFC----------------------k~CPvCR~~vs~ 124 (312)
....+|.||+.++.+ |. +|- .|| .|= ..||.|+++++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 457799999999876 42 233 677 664 149999998764
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=88.02 E-value=0.48 Score=34.11 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=28.9
Q ss_pred CCCeeeeccccccccCCCCCCCCC-C-----C---C----------ccCccccccccc
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-L-----L---C----------KAIPSVRGWVTV 124 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-l-----F---C----------k~CPvCR~~vs~ 124 (312)
+.+...|.||++-..+|++ .+|. . | | ..||+|+..+..
T Consensus 3 ~~~~~~CrIC~~~~~~~l~-~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERF-RACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECSCCCC-CSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCCCCcee-cCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 3456789999998888888 9975 3 2 4 369999988753
No 71
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=83.67 E-value=0.22 Score=53.43 Aligned_cols=90 Identities=17% Similarity=0.216 Sum_probs=61.6
Q ss_pred HHHHhhhhhc--cccc----cccccCCccccccccCC--------------ccccccCCCCCCCeeeeccccccccCCCC
Q 036958 45 REVFAAEEKS--NEAP----KTCENNNGFLEDEVSDK--------------KDDDEKGNGNDGSFFDSNICLDLARDTPP 104 (312)
Q Consensus 45 ~e~~a~eer~--~e~~----k~c~n~~~~l~d~~s~k--------------k~d~ek~~~~~~e~f~CpICLDvfrDPVv 104 (312)
-+|||.++|. .|.. .-+.++.|++..+..++ +...+......-+.|.|||-+++++|||+
T Consensus 827 ~~aVa~DgRSy~~elF~~a~~il~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~DPVi 906 (968)
T 3m62_A 827 ISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVI 906 (968)
T ss_dssp HHHHHHCTTTCCHHHHHHHHHHHTTSTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCSSEEE
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHhCCeE
Confidence 3469999983 2333 33344555544433221 01112223556689999999999999999
Q ss_pred CCCCC-C-CC-----------ccCcccccccccCCcccccccCC
Q 036958 105 PPPCD-L-LC-----------KAIPSVRGWVTVKNVTPMYGCEN 135 (312)
Q Consensus 105 ~T~CG-l-FC-----------k~CPvCR~~vs~~~L~Pnygl~n 135 (312)
++-| . |= ..||+=+++++...++||+.+..
T Consensus 907 -lpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~ 949 (968)
T 3m62_A 907 -LPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQ 949 (968)
T ss_dssp -CTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHH
T ss_pred -cCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHH
Confidence 9997 4 43 46999999999999999998864
No 72
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.90 E-value=0.47 Score=35.98 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=26.9
Q ss_pred CeeeeccccccccCCCCCCCCC-CC---C----------ccCcccccccc
Q 036958 88 SFFDSNICLDLARDTPPPPPCD-LL---C----------KAIPSVRGWVT 123 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T~CG-lF---C----------k~CPvCR~~vs 123 (312)
....|.||.+++..=+.|..|+ .| | ..||+|++.+.
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 3468999999988666677788 54 5 25999987654
No 73
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=77.97 E-value=0.92 Score=32.23 Aligned_cols=40 Identities=8% Similarity=-0.040 Sum_probs=26.8
Q ss_pred CCCCeeeecccccccc---------------CCCCCCCCC-CCC-----------------ccCccccccccc
Q 036958 85 NDGSFFDSNICLDLAR---------------DTPPPPPCD-LLC-----------------KAIPSVRGWVTV 124 (312)
Q Consensus 85 ~~~e~f~CpICLDvfr---------------DPVv~T~CG-lFC-----------------k~CPvCR~~vs~ 124 (312)
.....|.|++|...|. .|..|..|+ .|- ..|++|...+..
T Consensus 4 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 76 (96)
T 2dmd_A 4 GSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN 76 (96)
T ss_dssp CCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS
T ss_pred CCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence 3445688888877664 456677777 665 158888877753
No 74
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=73.37 E-value=1.4 Score=36.25 Aligned_cols=26 Identities=12% Similarity=0.141 Sum_probs=17.8
Q ss_pred cccCCCCCCCCC-CCC------ccCcccccccc
Q 036958 98 LARDTPPPPPCD-LLC------KAIPSVRGWVT 123 (312)
Q Consensus 98 vfrDPVv~T~CG-lFC------k~CPvCR~~vs 123 (312)
+.-.|..|-.|| .|+ ..||.|+..-.
T Consensus 63 L~v~p~~C~~CG~~F~~~~~kPsrCP~CkSe~I 95 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVFKAEINIPSRCPKCKSEWI 95 (105)
T ss_dssp EEECCCBBTTTCCBCCCCSSCCSSCSSSCCCCB
T ss_pred EEEECcChhhCcCeecccCCCCCCCcCCCCCcc
Confidence 344556677888 777 26999987543
No 75
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=70.69 E-value=4.3 Score=29.28 Aligned_cols=39 Identities=8% Similarity=-0.077 Sum_probs=28.5
Q ss_pred CCCeeeecccccccc---------------CCCCCCCCC-CCC-----------------ccCccccccccc
Q 036958 86 DGSFFDSNICLDLAR---------------DTPPPPPCD-LLC-----------------KAIPSVRGWVTV 124 (312)
Q Consensus 86 ~~e~f~CpICLDvfr---------------DPVv~T~CG-lFC-----------------k~CPvCR~~vs~ 124 (312)
....|.|.+|...|. .|..|..|+ .|= ..|++|...|..
T Consensus 14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 85 (106)
T 2ee8_A 14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQ 85 (106)
T ss_dssp CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSS
T ss_pred CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccC
Confidence 345689999988764 567788888 776 258888877753
No 76
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=66.68 E-value=3.1 Score=29.37 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=9.9
Q ss_pred CCCeeeecccccccc
Q 036958 86 DGSFFDSNICLDLAR 100 (312)
Q Consensus 86 ~~e~f~CpICLDvfr 100 (312)
+...|.|++|...|.
T Consensus 4 ~~~~~~C~~C~~~f~ 18 (95)
T 2yt9_A 4 GSSGVACEICGKIFR 18 (95)
T ss_dssp CCSCEECSSSCCEES
T ss_pred CCCCeECCCCCCccC
Confidence 345677888876654
No 77
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.48 E-value=2.5 Score=28.11 Aligned_cols=37 Identities=5% Similarity=-0.198 Sum_probs=23.1
Q ss_pred CCCCeeeeccccccccCCCCCCCCC-CCCccCccccccccc
Q 036958 85 NDGSFFDSNICLDLARDTPPPPPCD-LLCKAIPSVRGWVTV 124 (312)
Q Consensus 85 ~~~e~f~CpICLDvfrDPVv~T~CG-lFCk~CPvCR~~vs~ 124 (312)
.....|.|.+|...|..... +.=. .| .|++|...+..
T Consensus 14 ~~~~~~~C~~C~k~f~~~~~-l~~~~~~--~C~~C~~~f~~ 51 (73)
T 2ctu_A 14 LGDRSQKCSKCGIIFIRRST-LSRRKTP--MCEKCRKDSCQ 51 (73)
T ss_dssp CCCSEEECSSSCCEEECCCC-CCCSSSC--CCHHHHHTCSC
T ss_pred CCCCCeeCCcccchhCCHHH-hCcCCCC--CCCCCChhhcC
Confidence 44567999999988765433 1112 22 57788776653
No 78
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=62.62 E-value=4.8 Score=29.44 Aligned_cols=12 Identities=17% Similarity=0.116 Sum_probs=6.2
Q ss_pred Ceeeeccccccc
Q 036958 88 SFFDSNICLDLA 99 (312)
Q Consensus 88 e~f~CpICLDvf 99 (312)
..|.|++|...|
T Consensus 6 ~~~~C~~C~~~f 17 (124)
T 2dlq_A 6 SGVECPTCHKKF 17 (124)
T ss_dssp SSCCCTTTCCCC
T ss_pred CCCCCCCCCCcC
Confidence 345555555544
No 79
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=59.26 E-value=2.1 Score=32.78 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=22.4
Q ss_pred CCCCCeeeeccccccccCCCCCCCC-C-CCCcc
Q 036958 84 GNDGSFFDSNICLDLARDTPPPPPC-D-LLCKA 114 (312)
Q Consensus 84 ~~~~e~f~CpICLDvfrDPVv~T~C-G-lFCk~ 114 (312)
....+..-|.||.+-+. +-|..| | +||..
T Consensus 3 ~~~ee~pWC~ICneDAt--lrC~gCdgDLYC~r 33 (67)
T 2d8v_A 3 SGSSGLPWCCICNEDAT--LRCAGCDGDLYCAR 33 (67)
T ss_dssp SSCCCCSSCTTTCSCCC--EEETTTTSEEECSS
T ss_pred CcCcCCCeeEEeCCCCe--EEecCCCCceehHH
Confidence 34556778999999876 778999 5 99843
No 80
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=58.26 E-value=3.1 Score=40.38 Aligned_cols=44 Identities=14% Similarity=0.162 Sum_probs=36.3
Q ss_pred CCCeeeeccccccccCCCCCCCCC-CCC---------------ccCcccccccccCCccc
Q 036958 86 DGSFFDSNICLDLARDTPPPPPCD-LLC---------------KAIPSVRGWVTVKNVTP 129 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDPVv~T~CG-lFC---------------k~CPvCR~~vs~~~L~P 129 (312)
..-.+.|||-+..++.|+-...|. +-| ..||+|.+.+....|..
T Consensus 246 ~~vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 246 TIMSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp EEEESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred eEEeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 344689999999999999988999 888 36999999887666554
No 81
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=57.80 E-value=3 Score=28.38 Aligned_cols=10 Identities=0% Similarity=-0.223 Sum_probs=6.9
Q ss_pred cCcccccccc
Q 036958 114 AIPSVRGWVT 123 (312)
Q Consensus 114 ~CPvCR~~vs 123 (312)
.|++|...+.
T Consensus 59 ~C~~C~~~f~ 68 (82)
T 2kmk_A 59 KCQVCGKAFS 68 (82)
T ss_dssp ECTTTSCEES
T ss_pred cCCCcchhhC
Confidence 4888876664
No 82
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=57.62 E-value=5 Score=29.26 Aligned_cols=39 Identities=8% Similarity=0.150 Sum_probs=30.1
Q ss_pred CCCeeeecccccccc-------------CCCCCCCCC-CCC----------------ccCccccccccc
Q 036958 86 DGSFFDSNICLDLAR-------------DTPPPPPCD-LLC----------------KAIPSVRGWVTV 124 (312)
Q Consensus 86 ~~e~f~CpICLDvfr-------------DPVv~T~CG-lFC----------------k~CPvCR~~vs~ 124 (312)
....|.|.+|...|. .|..|..|| .|- ..|++|...|..
T Consensus 13 ~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~ 81 (107)
T 1wjp_A 13 NKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKS 81 (107)
T ss_dssp CCCCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECSS
T ss_pred CCcCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhCC
Confidence 445799999998774 467888999 887 259999887753
No 83
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=54.47 E-value=5.4 Score=29.05 Aligned_cols=38 Identities=5% Similarity=-0.060 Sum_probs=23.4
Q ss_pred CCCeeeecccccccc---------------CCCCCCCCC-CCC-----------------ccCccccccccc
Q 036958 86 DGSFFDSNICLDLAR---------------DTPPPPPCD-LLC-----------------KAIPSVRGWVTV 124 (312)
Q Consensus 86 ~~e~f~CpICLDvfr---------------DPVv~T~CG-lFC-----------------k~CPvCR~~vs~ 124 (312)
....|.| +|...|. .|..|..|+ .|- ..|++|...|..
T Consensus 7 ~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 77 (110)
T 2csh_A 7 GDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW 77 (110)
T ss_dssp CCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC
T ss_pred CCCCEec-cCCCccCCHHHHHHHHHHcCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC
Confidence 3445777 7766553 355566666 555 148888877753
No 84
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=54.42 E-value=2 Score=35.12 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=23.4
Q ss_pred eccccccccC-CCCCCCCC-CCC------------ccCccccccccc
Q 036958 92 SNICLDLARD-TPPPPPCD-LLC------------KAIPSVRGWVTV 124 (312)
Q Consensus 92 CpICLDvfrD-PVv~T~CG-lFC------------k~CPvCR~~vs~ 124 (312)
|++|.-.+.. -.+ ++|. .|| +.||.|+..+..
T Consensus 4 C~~C~~Pi~iygRm-IPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 4 CDKCGLPIKVYGRM-IPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp CTTTCSBCSEEEEE-ETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred cCccCCCeEEEeee-ccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 6777665443 334 8999 999 369999998863
No 85
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=52.80 E-value=3.8 Score=36.74 Aligned_cols=36 Identities=22% Similarity=0.380 Sum_probs=27.6
Q ss_pred CeeeeccccccccCCCCCCCCC----CCC----------ccCcccccccc
Q 036958 88 SFFDSNICLDLARDTPPPPPCD----LLC----------KAIPSVRGWVT 123 (312)
Q Consensus 88 e~f~CpICLDvfrDPVv~T~CG----lFC----------k~CPvCR~~vs 123 (312)
....|.||.++...=+.|..|+ ..| ..||.|+....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 4788999999988667777787 345 26999987654
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=52.50 E-value=10 Score=30.63 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=27.2
Q ss_pred CCeeeecccccccc-----C-CCCCCCCC-CCC------------ccCccccccccc
Q 036958 87 GSFFDSNICLDLAR-----D-TPPPPPCD-LLC------------KAIPSVRGWVTV 124 (312)
Q Consensus 87 ~e~f~CpICLDvfr-----D-PVv~T~CG-lFC------------k~CPvCR~~vs~ 124 (312)
...-.|.||.|-.- + =|.|-.|+ -.| +.||.|+..+..
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 34568999998521 1 25677888 888 469999988863
No 87
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=48.68 E-value=4.5 Score=32.17 Aligned_cols=39 Identities=8% Similarity=0.070 Sum_probs=29.7
Q ss_pred CCCeeeecccccccc---------------CCCCCCCCC-CCC-----------------ccCccccccccc
Q 036958 86 DGSFFDSNICLDLAR---------------DTPPPPPCD-LLC-----------------KAIPSVRGWVTV 124 (312)
Q Consensus 86 ~~e~f~CpICLDvfr---------------DPVv~T~CG-lFC-----------------k~CPvCR~~vs~ 124 (312)
+...|.|++|...|. -|..|..|| .|- ..|++|...|..
T Consensus 19 Gek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 90 (133)
T 2lt7_A 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFIN 90 (133)
T ss_dssp TEEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESS
T ss_pred CCcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCC
Confidence 445799999998764 477788888 887 159999887753
No 88
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=48.38 E-value=9.5 Score=25.75 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=11.2
Q ss_pred CCCCeeeecccccccc
Q 036958 85 NDGSFFDSNICLDLAR 100 (312)
Q Consensus 85 ~~~e~f~CpICLDvfr 100 (312)
.....|.|++|...|.
T Consensus 10 ~~~k~~~C~~C~k~F~ 25 (62)
T 1vd4_A 10 TNRASFKCPVCSSTFT 25 (62)
T ss_dssp CSSSEEECSSSCCEEE
T ss_pred CCCCCccCCCCCchhc
Confidence 3456788988887653
No 89
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=45.48 E-value=4.5 Score=39.07 Aligned_cols=45 Identities=9% Similarity=-0.030 Sum_probs=36.3
Q ss_pred CCCCeeeeccccccccCCCCCCCCC-CCC---------------ccCcccccccccCCccc
Q 036958 85 NDGSFFDSNICLDLARDTPPPPPCD-LLC---------------KAIPSVRGWVTVKNVTP 129 (312)
Q Consensus 85 ~~~e~f~CpICLDvfrDPVv~T~CG-lFC---------------k~CPvCR~~vs~~~L~P 129 (312)
...-.+.|||-+..++.|+-...|. +-| ..||+|.+.+....|..
T Consensus 211 ~~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 211 SLRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp CEEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred eeEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 3344779999999999999888899 888 36999999887665554
No 90
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=45.06 E-value=12 Score=28.35 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=25.9
Q ss_pred ccCCCCCCCeeeecccccccc---CCCCCCCCC-CCCccC
Q 036958 80 EKGNGNDGSFFDSNICLDLAR---DTPPPPPCD-LLCKAI 115 (312)
Q Consensus 80 ek~~~~~~e~f~CpICLDvfr---DPVv~T~CG-lFCk~C 115 (312)
...+-.+.+...|.+|...|. ----|-.|| +||..|
T Consensus 12 ~~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C 51 (84)
T 1z2q_A 12 KGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDC 51 (84)
T ss_dssp CSCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGG
T ss_pred CCccccCCCCCCCcCcCCccccchhcccccCCCcEEChHH
Confidence 345666777889999998765 334577899 999654
No 91
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=43.66 E-value=12 Score=29.23 Aligned_cols=25 Identities=20% Similarity=0.518 Sum_probs=21.2
Q ss_pred Ceeeecc--ccccccCCCCCCCCC-CCC
Q 036958 88 SFFDSNI--CLDLARDTPPPPPCD-LLC 112 (312)
Q Consensus 88 e~f~CpI--CLDvfrDPVv~T~CG-lFC 112 (312)
....|.. |...---|+.|-.|| .||
T Consensus 24 ~~~~C~~~~Ck~~~~l~f~C~~C~~~FC 51 (86)
T 1wfe_A 24 KSYSCSFKGCTDVELVAVICPYCEKNFC 51 (86)
T ss_dssp CCEECCSTTCCCEESSCEECTTTCCEEC
T ss_pred CCCCCCCcCCCCCCccceECCCCCcccc
Confidence 4578999 997755899999999 999
No 92
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=43.39 E-value=8.1 Score=26.30 Aligned_cols=41 Identities=5% Similarity=-0.059 Sum_probs=21.6
Q ss_pred CCCCCCeeeeccccccccCCCCCCCCC-CC-C----ccCccccccccc
Q 036958 83 NGNDGSFFDSNICLDLARDTPPPPPCD-LL-C----KAIPSVRGWVTV 124 (312)
Q Consensus 83 ~~~~~e~f~CpICLDvfrDPVv~T~CG-lF-C----k~CPvCR~~vs~ 124 (312)
.......|.|.+|...|..... +.=- .. - ..|++|.+.|..
T Consensus 11 ~~~~~~~~~C~~C~k~f~~~~~-l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 11 MTHSDKPYKCDRCQASFRYKGN-LASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCCCCSBCCTTSSCCBSCHHH-HHHHHHHHCCCCSEECTTTCCEESC
T ss_pred ccCCCCCeECCCCCceeCCHHH-HHHHHHHcCCCCCEECCCCCchhCC
Confidence 3344567888888877653321 0000 00 0 158888777653
No 93
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=43.25 E-value=21 Score=27.85 Aligned_cols=14 Identities=14% Similarity=-0.057 Sum_probs=12.1
Q ss_pred CCeeeecccccccc
Q 036958 87 GSFFDSNICLDLAR 100 (312)
Q Consensus 87 ~e~f~CpICLDvfr 100 (312)
...+.|.||..+|-
T Consensus 25 m~~y~C~vCGyvYD 38 (81)
T 2kn9_A 25 YKLFRCIQCGFEYD 38 (81)
T ss_dssp CCEEEETTTCCEEE
T ss_pred cceEEeCCCCEEEc
Confidence 56899999999875
No 94
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.31 E-value=39 Score=24.55 Aligned_cols=16 Identities=19% Similarity=0.194 Sum_probs=11.1
Q ss_pred CCCCeeeecccccccc
Q 036958 85 NDGSFFDSNICLDLAR 100 (312)
Q Consensus 85 ~~~e~f~CpICLDvfr 100 (312)
.....|.|.+|...|.
T Consensus 15 ~~~~~~~C~~C~k~f~ 30 (115)
T 2dmi_A 15 TGASKFRCKDCSAAYD 30 (115)
T ss_dssp CCCCSEEBSSSSCEES
T ss_pred CCCCCEECCccCchhc
Confidence 3445688999987654
No 95
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.74 E-value=9.2 Score=25.71 Aligned_cols=39 Identities=5% Similarity=-0.162 Sum_probs=21.9
Q ss_pred CCCCeeeeccccccccCCCCCCCCC-CCC-----ccCccccccccc
Q 036958 85 NDGSFFDSNICLDLARDTPPPPPCD-LLC-----KAIPSVRGWVTV 124 (312)
Q Consensus 85 ~~~e~f~CpICLDvfrDPVv~T~CG-lFC-----k~CPvCR~~vs~ 124 (312)
.....|.|.+|...|..... +.-- ..- ..|++|...|..
T Consensus 5 ~~~~~~~C~~C~k~f~~~~~-L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 5 SSGHPEKCSECSYSCSSKAA-LRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CCCCSEECSSSSCEESSHHH-HHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCCCCeECCCCCcccCCHHH-HHHHHHHcCCCCCEeCCCCCCccCC
Confidence 44567888888877654322 1100 000 258899887753
No 96
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=41.69 E-value=22 Score=22.89 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=10.8
Q ss_pred CCCCCeeeecccccccc
Q 036958 84 GNDGSFFDSNICLDLAR 100 (312)
Q Consensus 84 ~~~~e~f~CpICLDvfr 100 (312)
......|.|.+|...|.
T Consensus 7 ~~~~k~~~C~~C~k~f~ 23 (54)
T 2eps_A 7 GSVGKPYICQSCGKGFS 23 (54)
T ss_dssp CCSSCCEECSSSCCEES
T ss_pred CCCCCCeECCCCCcccC
Confidence 34445688888876554
No 97
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.95 E-value=14 Score=27.48 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=19.0
Q ss_pred eeecc--ccccccCCCCCCCCC-CCC
Q 036958 90 FDSNI--CLDLARDTPPPPPCD-LLC 112 (312)
Q Consensus 90 f~CpI--CLDvfrDPVv~T~CG-lFC 112 (312)
..|.+ |...---|+.|-.|+ .||
T Consensus 13 ~~Cs~~~Ck~~~ll~f~C~~C~~~FC 38 (63)
T 1x4v_A 13 NKCERAGCRQREMMKLTCERCSRNFC 38 (63)
T ss_dssp CCCCSTTCCCCCSSCCBCSSSCCBCC
T ss_pred CCCCccCCCCCCccceECCCCCcccC
Confidence 57888 887655699999999 999
No 98
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=40.40 E-value=24 Score=26.44 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=16.6
Q ss_pred eeeecc--ccccc-----cCCCCCC-----CCC-CCCcc
Q 036958 89 FFDSNI--CLDLA-----RDTPPPP-----PCD-LLCKA 114 (312)
Q Consensus 89 ~f~CpI--CLDvf-----rDPVv~T-----~CG-lFCk~ 114 (312)
..-||- |...+ ...|.|. .|| .||..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~ 63 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRE 63 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETT
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccc
Confidence 455776 66543 2357776 899 99843
No 99
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.27 E-value=9.4 Score=28.74 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=22.7
Q ss_pred cCCCCCCCeeeecccccccc---CCCCCCCCC-CCCccC
Q 036958 81 KGNGNDGSFFDSNICLDLAR---DTPPPPPCD-LLCKAI 115 (312)
Q Consensus 81 k~~~~~~e~f~CpICLDvfr---DPVv~T~CG-lFCk~C 115 (312)
..+-.+.+...|.+|...|. ----|-.|| +||..|
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C 49 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTC 49 (82)
T ss_dssp ----CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGG
T ss_pred CccccCccCCcccCcCCcccCccccccCCCCCCEEChHH
Confidence 34555667778999998765 233477899 999654
No 100
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=40.22 E-value=7.2 Score=40.69 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=21.2
Q ss_pred CCCCeeeeccccccccCC---------CCCCCCC-CCC
Q 036958 85 NDGSFFDSNICLDLARDT---------PPPPPCD-LLC 112 (312)
Q Consensus 85 ~~~e~f~CpICLDvfrDP---------Vv~T~CG-lFC 112 (312)
-.-+.-.|+-|+.-+.|| +.||.|| .|=
T Consensus 107 i~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~t 144 (761)
T 3vth_A 107 VSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFS 144 (761)
T ss_dssp CCCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGG
T ss_pred cCCCccccHHHHHHhcCCCccccCCCcccCCCCCcchh
Confidence 345677999999766655 3599999 887
No 101
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=39.04 E-value=7.4 Score=24.85 Aligned_cols=10 Identities=0% Similarity=-0.373 Sum_probs=6.7
Q ss_pred cCcccccccc
Q 036958 114 AIPSVRGWVT 123 (312)
Q Consensus 114 ~CPvCR~~vs 123 (312)
.|++|...+.
T Consensus 34 ~C~~C~~~f~ 43 (57)
T 3uk3_C 34 KCEFCEYAAA 43 (57)
T ss_dssp ECSSSSCEES
T ss_pred CCCCCcchhC
Confidence 4777876654
No 102
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=38.55 E-value=18 Score=26.81 Aligned_cols=12 Identities=8% Similarity=0.243 Sum_probs=9.1
Q ss_pred Ceeeeccccccc
Q 036958 88 SFFDSNICLDLA 99 (312)
Q Consensus 88 e~f~CpICLDvf 99 (312)
..|.|++|...|
T Consensus 33 ~~~~C~~C~k~F 44 (96)
T 2ctd_A 33 GSVSCPTCQAVG 44 (96)
T ss_dssp SCEECTTTCSCE
T ss_pred CCcCCCCCCCCc
Confidence 458888888777
No 103
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.19 E-value=11 Score=25.80 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=11.2
Q ss_pred CCCeeeeccccccccC
Q 036958 86 DGSFFDSNICLDLARD 101 (312)
Q Consensus 86 ~~e~f~CpICLDvfrD 101 (312)
....|.|.+|...|..
T Consensus 4 ~~k~~~C~~C~k~f~~ 19 (78)
T 2d9h_A 4 GSSGLQCEICGFTCRQ 19 (78)
T ss_dssp SCCCEECSSSCCEESS
T ss_pred CCcCeECCCCCCeeCC
Confidence 4457888888877653
No 104
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=37.97 E-value=12 Score=25.34 Aligned_cols=39 Identities=3% Similarity=-0.187 Sum_probs=21.1
Q ss_pred CCCCeeeeccccccccCCCCCCCCC-C-CC----ccCccccccccc
Q 036958 85 NDGSFFDSNICLDLARDTPPPPPCD-L-LC----KAIPSVRGWVTV 124 (312)
Q Consensus 85 ~~~e~f~CpICLDvfrDPVv~T~CG-l-FC----k~CPvCR~~vs~ 124 (312)
.....|.|.+|...|..... +.=- . -- ..|++|.+.|..
T Consensus 10 ~~~k~~~C~~C~k~f~~~~~-L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 10 SGEKPYGCVECGKAFSRSSI-LVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp TTCCCEECSSSCCEESSHHH-HHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCCCCccCCCCCCccCCHHH-HHHHHHhcCCCCCeECCCCCcccCC
Confidence 34457888888877653322 0000 0 00 258888877653
No 105
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=37.72 E-value=8.5 Score=31.33 Aligned_cols=35 Identities=11% Similarity=0.184 Sum_probs=25.1
Q ss_pred cCCCCCCCeeeeccccccccC---CCCCCCCC-CCCccC
Q 036958 81 KGNGNDGSFFDSNICLDLARD---TPPPPPCD-LLCKAI 115 (312)
Q Consensus 81 k~~~~~~e~f~CpICLDvfrD---PVv~T~CG-lFCk~C 115 (312)
..+-.+.+...|.+|...|.- ---|-.|| +||..|
T Consensus 61 ~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~C 99 (125)
T 1joc_A 61 RKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAEC 99 (125)
T ss_dssp CCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGG
T ss_pred CccccCCCCCCCcCcCCccccccccccCCCCCeEEChHH
Confidence 446666677789999987652 23577899 999654
No 106
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=37.49 E-value=8.7 Score=25.64 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=8.3
Q ss_pred eeeeccccccccC
Q 036958 89 FFDSNICLDLARD 101 (312)
Q Consensus 89 ~f~CpICLDvfrD 101 (312)
-|.||||+..+..
T Consensus 5 GFiCP~C~~~l~s 17 (34)
T 3mjh_B 5 GFICPQCMKSLGS 17 (34)
T ss_dssp EEECTTTCCEESS
T ss_pred ccCCcHHHHHcCC
Confidence 4777777765544
No 107
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=35.56 E-value=11 Score=26.49 Aligned_cols=11 Identities=9% Similarity=0.054 Sum_probs=8.3
Q ss_pred cCccccccccc
Q 036958 114 AIPSVRGWVTV 124 (312)
Q Consensus 114 ~CPvCR~~vs~ 124 (312)
.|++|.+.|..
T Consensus 34 ~C~~C~k~F~~ 44 (60)
T 4gzn_C 34 SCPECGKCFRD 44 (60)
T ss_dssp ECTTTCCEESS
T ss_pred ECCCCCCCcCC
Confidence 58889887753
No 108
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=35.28 E-value=13 Score=28.56 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=21.5
Q ss_pred CCCCeeeeccccccccC---CCCCCCCC-CCCccC
Q 036958 85 NDGSFFDSNICLDLARD---TPPPPPCD-LLCKAI 115 (312)
Q Consensus 85 ~~~e~f~CpICLDvfrD---PVv~T~CG-lFCk~C 115 (312)
.+.+...|.+|...|.- ---|-.|| +||..|
T Consensus 5 ~~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 39 (88)
T 1wfk_A 5 SSGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGC 39 (88)
T ss_dssp CCCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTT
T ss_pred CCCcCCCCcCcCCcccCccccccCCCCCCEEChhH
Confidence 34455689999987652 23477899 999654
No 109
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=34.41 E-value=11 Score=29.85 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=18.2
Q ss_pred eeeecccccccc--CCCCCCCCC-CCC
Q 036958 89 FFDSNICLDLAR--DTPPPPPCD-LLC 112 (312)
Q Consensus 89 ~f~CpICLDvfr--DPVv~T~CG-lFC 112 (312)
.-.|.+|..-.- .|+.| .|| +||
T Consensus 25 ~~rC~~C~kkvgl~~~f~C-rCg~~FC 50 (85)
T 1wff_A 25 MKHCFLCGKKTGLATSFEC-RCGNNFC 50 (85)
T ss_dssp CCBCSSSCCBCSSSSCEEC-TTCCEEC
T ss_pred CccchhhCCeecccCCeEc-CCCCEec
Confidence 358999998544 48998 599 999
No 110
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=33.27 E-value=14 Score=29.48 Aligned_cols=8 Identities=13% Similarity=0.405 Sum_probs=3.5
Q ss_pred eeeccccc
Q 036958 90 FDSNICLD 97 (312)
Q Consensus 90 f~CpICLD 97 (312)
|.|++|..
T Consensus 78 ~~C~~C~~ 85 (190)
T 2i13_A 78 YKCPECGK 85 (190)
T ss_dssp EECTTTCC
T ss_pred ccCcccCC
Confidence 44444443
No 111
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=33.16 E-value=21 Score=30.39 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=18.4
Q ss_pred CCeeeeccccccccCCCCCCCCCCCCccCcccccc
Q 036958 87 GSFFDSNICLDLARDTPPPPPCDLLCKAIPSVRGW 121 (312)
Q Consensus 87 ~e~f~CpICLDvfrDPVv~T~CGlFCk~CPvCR~~ 121 (312)
...+.|++|..++..-.. ..||+|..+
T Consensus 136 ~~~~~C~~CG~i~~~~~p--------~~CP~Cg~~ 162 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAP--------EYCPVCGAP 162 (170)
T ss_dssp SCEEECTTTCCEEESCCC--------SBCTTTCCB
T ss_pred CCeeEeCCCCCeeCCCCC--------CCCCCCCCC
Confidence 468899999998653211 158999653
No 112
>3v2d_6 50S ribosomal protein L33; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_5 2hgj_5 2hgu_5 2j03_6 2jl6_6 2jl8_6 2v47_6 2v49_6 2wdi_6 2wdj_6 2wdl_6 2wdn_6 2wh2_6 2wh4_6 2wrj_6 2wrl_6 2wro_6 2wrr_6 2x9s_6 2x9u_6 ...
Probab=33.10 E-value=6.8 Score=28.45 Aligned_cols=10 Identities=30% Similarity=0.235 Sum_probs=7.9
Q ss_pred ccCccccccc
Q 036958 113 KAIPSVRGWV 122 (312)
Q Consensus 113 k~CPvCR~~v 122 (312)
++||.|++.+
T Consensus 38 Kycp~c~kHt 47 (54)
T 3v2d_6 38 KYCPWCRKHT 47 (54)
T ss_dssp EEETTTTEEE
T ss_pred eeCCCCCCEe
Confidence 5799998754
No 113
>2zjr_1 50S ribosomal protein L33; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.6 PDB: 1nwx_1* 1xbp_1* 2zjp_1* 2zjq_1 1nwy_1 3cf5_1* 3dll_1* 3pio_1* 3pip_1* 1pnu_1 1pny_1 1vor_3 1vou_3 1vow_3 1voy_3 1vp0_3
Probab=33.00 E-value=11 Score=27.34 Aligned_cols=10 Identities=30% Similarity=0.272 Sum_probs=8.0
Q ss_pred ccCccccccc
Q 036958 113 KAIPSVRGWV 122 (312)
Q Consensus 113 k~CPvCR~~v 122 (312)
++||.|++.+
T Consensus 39 Kycp~~~kHt 48 (55)
T 2zjr_1 39 KYDPVAKKHV 48 (55)
T ss_pred ccCCCCCCEE
Confidence 5799998854
No 114
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=32.09 E-value=6.7 Score=40.85 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=20.7
Q ss_pred CCCeeeeccccccccCC---------CCCCCCC-CCC
Q 036958 86 DGSFFDSNICLDLARDT---------PPPPPCD-LLC 112 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDP---------Vv~T~CG-lFC 112 (312)
.-+.-.|+-|+.-+.|| +.||.|| .|=
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~t 139 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFT 139 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGG
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhh
Confidence 45677999999765555 4599999 887
No 115
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=31.61 E-value=14 Score=25.40 Aligned_cols=10 Identities=10% Similarity=-0.196 Sum_probs=7.2
Q ss_pred cCcccccccc
Q 036958 114 AIPSVRGWVT 123 (312)
Q Consensus 114 ~CPvCR~~vs 123 (312)
.|++|...+.
T Consensus 64 ~C~~C~~~f~ 73 (90)
T 1a1h_A 64 ACDICGRKFA 73 (90)
T ss_dssp ECTTTCCEES
T ss_pred cCCCCCchhC
Confidence 4888877664
No 116
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.42 E-value=19 Score=27.11 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=24.5
Q ss_pred cCCCCCCCeeeecccccccc---CCCCCCCCC-CCCccC
Q 036958 81 KGNGNDGSFFDSNICLDLAR---DTPPPPPCD-LLCKAI 115 (312)
Q Consensus 81 k~~~~~~e~f~CpICLDvfr---DPVv~T~CG-lFCk~C 115 (312)
..+-.+.+...|.+|...|. ----|-.|| +||..|
T Consensus 6 ~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 44 (84)
T 1x4u_A 6 SGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRC 44 (84)
T ss_dssp CCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTT
T ss_pred CccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhh
Confidence 34555666778999998764 223467899 999765
No 117
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=31.20 E-value=18 Score=31.01 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=18.1
Q ss_pred Ceeeecccccccc--CCCCCCCCCCCCccCcccccc
Q 036958 88 SFFDSNICLDLAR--DTPPPPPCDLLCKAIPSVRGW 121 (312)
Q Consensus 88 e~f~CpICLDvfr--DPVv~T~CGlFCk~CPvCR~~ 121 (312)
..+.|++|..++. ++.. .||+|..+
T Consensus 154 ~~~~C~~CG~~~~g~~~p~---------~CP~C~~~ 180 (191)
T 1lko_A 154 TKWRCRNCGYVHEGTGAPE---------LCPACAHP 180 (191)
T ss_dssp EEEEETTTCCEEEEEECCS---------BCTTTCCB
T ss_pred ceEEECCCCCEeeCCCCCC---------CCCCCcCC
Confidence 3789999998874 3333 69999764
No 118
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.65 E-value=21 Score=26.63 Aligned_cols=40 Identities=8% Similarity=-0.050 Sum_probs=22.4
Q ss_pred CCCCCeeeeccccccccCCCCCCCCC--CCC----ccCccccccccc
Q 036958 84 GNDGSFFDSNICLDLARDTPPPPPCD--LLC----KAIPSVRGWVTV 124 (312)
Q Consensus 84 ~~~~e~f~CpICLDvfrDPVv~T~CG--lFC----k~CPvCR~~vs~ 124 (312)
......+.|++|...|..... +.=- .-- ..|++|.+.|..
T Consensus 23 ~~~~~~h~C~~Cgk~F~~~~~-L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 23 SASAECHLCPVCGESFASKGA-QERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CCCCTTEECTTSCCEESSHHH-HHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCCCCEECCCCCCCcCcHHH-HhhhhhhccCCCccCCCCCCCEeCC
Confidence 344566888888877764322 0000 000 259999888753
No 119
>3r8s_1 50S ribosomal protein L33; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_1 3j19_1 2wwq_4 3oat_1* 3oas_1* 3ofd_1 3ofc_1 3ofr_1* 3ofz_1* 3og0_1 3ofq_1 3r8t_1 3i1n_1 1vs8_1 1vs6_1 1vt2_1 3i1p_1 3i1r_1 3i1t_1 3i20_1 ...
Probab=30.50 E-value=9.3 Score=27.31 Aligned_cols=10 Identities=50% Similarity=0.448 Sum_probs=7.8
Q ss_pred ccCccccccc
Q 036958 113 KAIPSVRGWV 122 (312)
Q Consensus 113 k~CPvCR~~v 122 (312)
++||.|++.+
T Consensus 35 Kycp~~~kht 44 (50)
T 3r8s_1 35 KFDPVVRQHV 44 (50)
T ss_dssp EEETTTTEEE
T ss_pred eeCcCCCCEe
Confidence 4799998754
No 120
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=30.01 E-value=11 Score=34.82 Aligned_cols=33 Identities=9% Similarity=0.025 Sum_probs=0.0
Q ss_pred CCCCCCeeeecccccccc---CCCCCCCCC-CCCccC
Q 036958 83 NGNDGSFFDSNICLDLAR---DTPPPPPCD-LLCKAI 115 (312)
Q Consensus 83 ~~~~~e~f~CpICLDvfr---DPVv~T~CG-lFCk~C 115 (312)
+..+.+...|.+|..-|. ----|-.|| .||..|
T Consensus 369 w~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~C 405 (434)
T 3mpx_A 369 LVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNC 405 (434)
T ss_dssp -------------------------------------
T ss_pred CCCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhh
Confidence 444555678999987654 335688999 999655
No 121
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.84 E-value=13 Score=27.01 Aligned_cols=40 Identities=10% Similarity=-0.017 Sum_probs=23.1
Q ss_pred CCCCCeeeecccccccc-CCCCCCCCC-CCC------ccCccccccccc
Q 036958 84 GNDGSFFDSNICLDLAR-DTPPPPPCD-LLC------KAIPSVRGWVTV 124 (312)
Q Consensus 84 ~~~~e~f~CpICLDvfr-DPVv~T~CG-lFC------k~CPvCR~~vs~ 124 (312)
......|.|.+|...|. .... +.=- ... ..|++|.+.|..
T Consensus 19 h~~~~~~~C~~C~k~f~~~~~~-L~~H~~~h~~~~~~~~C~~C~k~F~~ 66 (98)
T 2gqj_A 19 IHERGEAVCPTCNVVTRKTLVG-LKKHMEVCQKLQDALKCQHCRKQFKS 66 (98)
T ss_dssp TTTTSCCCCTTTCCCCSSCSHH-HHHHHHHHHHHHHHHSCSSSCCCCSC
T ss_pred hccCCCcCCCCCCCChhhhHHH-HHHHHHHHcCCCCCEECCCCCCccCC
Confidence 34456789999988876 4332 1000 000 258888887753
No 122
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=29.53 E-value=7.7 Score=39.92 Aligned_cols=27 Identities=11% Similarity=0.066 Sum_probs=20.6
Q ss_pred CCCeeeeccccccccCC---------CCCCCCC-CCC
Q 036958 86 DGSFFDSNICLDLARDT---------PPPPPCD-LLC 112 (312)
Q Consensus 86 ~~e~f~CpICLDvfrDP---------Vv~T~CG-lFC 112 (312)
.-+.-.|+-|+.-+.|| +.||.|| .|=
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~t 50 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFT 50 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGG
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHH
Confidence 44677899999766555 3599999 887
No 123
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=29.24 E-value=15 Score=28.24 Aligned_cols=23 Identities=13% Similarity=0.285 Sum_probs=18.8
Q ss_pred eeecc--ccccccCCCCCCCCC-CCC
Q 036958 90 FDSNI--CLDLARDTPPPPPCD-LLC 112 (312)
Q Consensus 90 f~CpI--CLDvfrDPVv~T~CG-lFC 112 (312)
-.|.+ |...---|+.|-.|+ +||
T Consensus 15 ~~Cs~~~C~~~dflpf~C~~C~~~FC 40 (75)
T 1wys_A 15 QHCQVQHCRQRDFLPFVCDGCSGIFC 40 (75)
T ss_dssp CCCSCTTTCCCSCCCEECTTTCCEEC
T ss_pred CCcCcccCCCccceeeECcccCcCcC
Confidence 37877 887755699999999 999
No 124
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.41 E-value=14 Score=28.06 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=18.6
Q ss_pred eeeccccccccCC----CCCCCCC-CCC
Q 036958 90 FDSNICLDLARDT----PPPPPCD-LLC 112 (312)
Q Consensus 90 f~CpICLDvfrDP----Vv~T~CG-lFC 112 (312)
-.|..|....--+ ..| -|| +||
T Consensus 16 ~rC~~C~kk~gL~~~egf~C-rCg~~FC 42 (67)
T 1x4w_A 16 RRCFQCQTKLELVQQELGSC-RCGYVFC 42 (67)
T ss_dssp TBCSSSCCBCCHHHHHHHCC-SSSCCCC
T ss_pred CcchhhCCeecccccCceEe-cCCCEeh
Confidence 4799999887776 787 999 999
No 125
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=27.87 E-value=24 Score=26.30 Aligned_cols=14 Identities=29% Similarity=0.214 Sum_probs=10.4
Q ss_pred CCeeeecccccccc
Q 036958 87 GSFFDSNICLDLAR 100 (312)
Q Consensus 87 ~e~f~CpICLDvfr 100 (312)
...|.|++|...|.
T Consensus 72 ~~~~~C~~C~k~f~ 85 (129)
T 2wbt_A 72 ISQFVCPLCLMPFS 85 (129)
T ss_dssp HCSEECTTTCCEES
T ss_pred CCCeECCCCCcccC
Confidence 45688998887764
No 126
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=27.69 E-value=13 Score=30.55 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=18.0
Q ss_pred CCCCeeeecccccccc---CCCCCCCCC-CCCc
Q 036958 85 NDGSFFDSNICLDLAR---DTPPPPPCD-LLCK 113 (312)
Q Consensus 85 ~~~e~f~CpICLDvfr---DPVv~T~CG-lFCk 113 (312)
++.....|.+|...|. ----|-.|| +||.
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~ 47 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCM 47 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECG
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCH
Confidence 4445568999988664 234578999 9994
No 127
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=27.63 E-value=33 Score=25.78 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=15.5
Q ss_pred eeccccccc-----cCCCCCCCCC-CCCccC
Q 036958 91 DSNICLDLA-----RDTPPPPPCD-LLCKAI 115 (312)
Q Consensus 91 ~CpICLDvf-----rDPVv~T~CG-lFCk~C 115 (312)
-||=|...+ ..+|.|..|| .||..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C 57 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRC 57 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSS
T ss_pred ECcCCCchheecCCCCceEeCCCCCcccccc
Confidence 377665543 2346777799 888543
No 128
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=27.41 E-value=45 Score=23.66 Aligned_cols=13 Identities=8% Similarity=0.166 Sum_probs=9.7
Q ss_pred Ceeeecccccccc
Q 036958 88 SFFDSNICLDLAR 100 (312)
Q Consensus 88 e~f~CpICLDvfr 100 (312)
..+.|.+|..++.
T Consensus 2 ~~y~C~~CGyvYd 14 (52)
T 1e8j_A 2 DIYVCTVCGYEYD 14 (52)
T ss_dssp CCEECSSSCCCCC
T ss_pred CcEEeCCCCeEEc
Confidence 3578888888764
No 129
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=26.01 E-value=27 Score=22.04 Aligned_cols=10 Identities=0% Similarity=-0.386 Sum_probs=7.4
Q ss_pred cCcccccccc
Q 036958 114 AIPSVRGWVT 123 (312)
Q Consensus 114 ~CPvCR~~vs 123 (312)
.|++|...+.
T Consensus 31 ~C~~C~~~f~ 40 (57)
T 1bbo_A 31 HCTYCNFSFK 40 (57)
T ss_dssp ECSSSSCEES
T ss_pred cCCCCCchhc
Confidence 4888877764
No 130
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=26.00 E-value=40 Score=26.63 Aligned_cols=15 Identities=7% Similarity=-0.117 Sum_probs=12.3
Q ss_pred CCCeeeecccccccc
Q 036958 86 DGSFFDSNICLDLAR 100 (312)
Q Consensus 86 ~~e~f~CpICLDvfr 100 (312)
....+.|.+|..+|-
T Consensus 32 ~m~~y~C~vCGyvYD 46 (87)
T 1s24_A 32 AYLKWICITCGHIYD 46 (87)
T ss_dssp CCCEEEETTTTEEEE
T ss_pred CCceEECCCCCeEec
Confidence 456899999998875
No 131
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.56 E-value=19 Score=27.21 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=17.6
Q ss_pred eeeecccccccc-CCCCCCCCC-CCC
Q 036958 89 FFDSNICLDLAR-DTPPPPPCD-LLC 112 (312)
Q Consensus 89 ~f~CpICLDvfr-DPVv~T~CG-lFC 112 (312)
.-.|..|..-.. -++.| .|| +||
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC 39 (64)
T 1wfh_A 15 PNRCTVCRKRVGLTGFMC-RCGTTFC 39 (64)
T ss_dssp CCCCTTTCCCCCTTCEEC-SSSCEEC
T ss_pred CCcChhhCCccCccCEEe-ecCCEec
Confidence 457999998533 36887 799 999
No 132
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.23 E-value=25 Score=23.92 Aligned_cols=38 Identities=3% Similarity=-0.143 Sum_probs=20.1
Q ss_pred CCeeeeccccccccCCCC-----CCCCCCCCccCccccccccc
Q 036958 87 GSFFDSNICLDLARDTPP-----PPPCDLLCKAIPSVRGWVTV 124 (312)
Q Consensus 87 ~e~f~CpICLDvfrDPVv-----~T~CGlFCk~CPvCR~~vs~ 124 (312)
...|.|.+|...|..... -+.-+.-=..|++|.+.|..
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 356888888877653321 00011000258888877753
No 133
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=25.20 E-value=28 Score=25.56 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=20.0
Q ss_pred eeccccccccCC--CCCCCCC-CCC-----------ccCccc
Q 036958 91 DSNICLDLARDT--PPPPPCD-LLC-----------KAIPSV 118 (312)
Q Consensus 91 ~CpICLDvfrDP--Vv~T~CG-lFC-----------k~CPvC 118 (312)
.|--|...|.+. ..|..|+ .|| ..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 477777766443 3578899 999 468887
No 134
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Probab=24.64 E-value=19 Score=28.38 Aligned_cols=10 Identities=30% Similarity=0.272 Sum_probs=8.1
Q ss_pred ccCccccccc
Q 036958 113 KAIPSVRGWV 122 (312)
Q Consensus 113 k~CPvCR~~v 122 (312)
++||.|++.+
T Consensus 66 KYcP~crKHt 75 (82)
T 1nkw_1 66 KYDPVAKKHV 75 (82)
T ss_pred ccCCCCCCee
Confidence 5899998865
No 135
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=24.56 E-value=43 Score=25.92 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=17.8
Q ss_pred Ceeeecccccccc-CCCCCCCCC-CCC
Q 036958 88 SFFDSNICLDLAR-DTPPPPPCD-LLC 112 (312)
Q Consensus 88 e~f~CpICLDvfr-DPVv~T~CG-lFC 112 (312)
..-.|..|..... -++.| .|| +||
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~FC 49 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGSTFC 49 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCEEC
T ss_pred cCccchhhcCcccccceEe-ccCCEec
Confidence 3457999986433 37888 799 999
No 136
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=24.08 E-value=41 Score=29.29 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=18.7
Q ss_pred CCCeeeecccccccc--CCCCCCCCCCCCccCcccccc
Q 036958 86 DGSFFDSNICLDLAR--DTPPPPPCDLLCKAIPSVRGW 121 (312)
Q Consensus 86 ~~e~f~CpICLDvfr--DPVv~T~CGlFCk~CPvCR~~ 121 (312)
+...+.|.+|..++. .|. .||+|...
T Consensus 168 ~~~~~~C~~CG~i~~g~~p~----------~CP~C~~~ 195 (202)
T 1yuz_A 168 DDKFHLCPICGYIHKGEDFE----------KCPICFRP 195 (202)
T ss_dssp SCCEEECSSSCCEEESSCCS----------BCTTTCCB
T ss_pred CCcEEEECCCCCEEcCcCCC----------CCCCCCCC
Confidence 456899999998864 343 58888653
No 137
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.92 E-value=37 Score=19.40 Aligned_cols=16 Identities=19% Similarity=0.463 Sum_probs=10.4
Q ss_pred CCCeeeeccccccccC
Q 036958 86 DGSFFDSNICLDLARD 101 (312)
Q Consensus 86 ~~e~f~CpICLDvfrD 101 (312)
....|.|++|...|..
T Consensus 6 ~~k~~~C~~C~k~f~~ 21 (36)
T 2els_A 6 SGKIFTCEYCNKVFKF 21 (36)
T ss_dssp CCCCEECTTTCCEESS
T ss_pred CCCCEECCCCCceeCC
Confidence 3456788888776653
No 138
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=23.70 E-value=49 Score=23.07 Aligned_cols=37 Identities=8% Similarity=0.072 Sum_probs=24.4
Q ss_pred CCeeeecc--cccccc---------------CCCCCC--CCC-CCC-----------------ccCcccccccc
Q 036958 87 GSFFDSNI--CLDLAR---------------DTPPPP--PCD-LLC-----------------KAIPSVRGWVT 123 (312)
Q Consensus 87 ~e~f~CpI--CLDvfr---------------DPVv~T--~CG-lFC-----------------k~CPvCR~~vs 123 (312)
...|.|.+ |...|. .|..|. .|+ .|- ..|++|...|.
T Consensus 13 ~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 86 (100)
T 2ebt_A 13 RRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFS 86 (100)
T ss_dssp CCCEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSSSCCBCS
T ss_pred CcceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCcCccC
Confidence 34688887 877663 455554 477 776 25888877664
No 139
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=23.10 E-value=1.2e+02 Score=24.21 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=21.0
Q ss_pred CCCC-CCCcc-CcccccccccCCcccccccCCC
Q 036958 106 PPCD-LLCKA-IPSVRGWVTVKNVTPMYGCENS 136 (312)
Q Consensus 106 T~CG-lFCk~-CPvCR~~vs~~~L~Pnygl~ns 136 (312)
|.|- -||+. |=.|..=|..+-|=..|++.+-
T Consensus 20 T~C~~CyCKkCc~HCq~CF~~KGLGIsYgRkkR 52 (86)
T 1tac_A 20 TASNRAHAKKSAYHSQVAFITKGLGISYGRKKR 52 (86)
T ss_dssp TCSSCSSTTTTTTTCCCSCSSTTSSSSSCCCSG
T ss_pred CCCCCceecchhhhhhHHHccCCCceEeccccc
Confidence 7899 99943 2224333888888888988643
No 140
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=22.77 E-value=22 Score=27.57 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.3
Q ss_pred eeeecccccc-ccCCCCCCCCC-CCC
Q 036958 89 FFDSNICLDL-ARDTPPPPPCD-LLC 112 (312)
Q Consensus 89 ~f~CpICLDv-frDPVv~T~CG-lFC 112 (312)
.-.|..|..- ---++.|- || +||
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FC 49 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFC 49 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEEC
T ss_pred CCcChhhCCcccccCeecC-CCCEec
Confidence 3579999874 33478877 99 999
No 141
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.22 E-value=39 Score=19.34 Aligned_cols=15 Identities=27% Similarity=0.549 Sum_probs=9.9
Q ss_pred CCCeeeecccccccc
Q 036958 86 DGSFFDSNICLDLAR 100 (312)
Q Consensus 86 ~~e~f~CpICLDvfr 100 (312)
....|.|++|...|.
T Consensus 6 ~~k~~~C~~C~k~f~ 20 (36)
T 2elq_A 6 SGKPFKCSLCEYATR 20 (36)
T ss_dssp CCCSEECSSSSCEES
T ss_pred CCCCccCCCCCchhC
Confidence 345677887776664
No 142
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.06 E-value=41 Score=19.04 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=8.7
Q ss_pred CCeeeecccccccc
Q 036958 87 GSFFDSNICLDLAR 100 (312)
Q Consensus 87 ~e~f~CpICLDvfr 100 (312)
...|.|++|...|.
T Consensus 7 ~~~~~C~~C~k~f~ 20 (36)
T 2elr_A 7 GKTHLCDMCGKKFK 20 (36)
T ss_dssp CSSCBCTTTCCBCS
T ss_pred CCCeecCcCCCCcC
Confidence 34567777766554
No 143
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.81 E-value=44 Score=18.91 Aligned_cols=15 Identities=13% Similarity=0.273 Sum_probs=9.7
Q ss_pred CCCeeeecccccccc
Q 036958 86 DGSFFDSNICLDLAR 100 (312)
Q Consensus 86 ~~e~f~CpICLDvfr 100 (312)
....|.|++|...|.
T Consensus 6 ~~k~~~C~~C~k~f~ 20 (36)
T 2elt_A 6 SGKPYKCPQCSYASA 20 (36)
T ss_dssp CCCSEECSSSSCEES
T ss_pred CCCCCCCCCCCcccC
Confidence 344677887776654
No 144
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=20.72 E-value=39 Score=21.61 Aligned_cols=11 Identities=9% Similarity=-0.245 Sum_probs=7.9
Q ss_pred cCccccccccc
Q 036958 114 AIPSVRGWVTV 124 (312)
Q Consensus 114 ~CPvCR~~vs~ 124 (312)
.|++|...+..
T Consensus 32 ~C~~C~~~f~~ 42 (60)
T 2adr_A 32 PCGLCNRAFTR 42 (60)
T ss_dssp ECTTTCCEESS
T ss_pred cCCCCCCccCC
Confidence 48888877753
No 145
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.54 E-value=51 Score=18.81 Aligned_cols=15 Identities=13% Similarity=-0.055 Sum_probs=9.3
Q ss_pred CCeeeeccccccccC
Q 036958 87 GSFFDSNICLDLARD 101 (312)
Q Consensus 87 ~e~f~CpICLDvfrD 101 (312)
...|.|++|...|..
T Consensus 9 ~k~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 9 IKPFQCPDCDRSFSR 23 (37)
T ss_dssp SSSBCCTTTCCCBSS
T ss_pred CCCccCCCCCcccCc
Confidence 345777777666543
No 146
>2ftc_P Mitochondrial ribosomal protein L33 isoform A, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_P
Probab=20.29 E-value=25 Score=25.11 Aligned_cols=10 Identities=30% Similarity=0.272 Sum_probs=7.8
Q ss_pred ccCccccccc
Q 036958 113 KAIPSVRGWV 122 (312)
Q Consensus 113 k~CPvCR~~v 122 (312)
++||.|++.+
T Consensus 37 Kycp~~~kht 46 (52)
T 2ftc_P 37 HYDPVVKQRV 46 (52)
T ss_pred ccCCCCCceE
Confidence 5799998754
No 147
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.27 E-value=47 Score=18.93 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=9.2
Q ss_pred CCeeeecccccccc
Q 036958 87 GSFFDSNICLDLAR 100 (312)
Q Consensus 87 ~e~f~CpICLDvfr 100 (312)
...|.|.+|...|.
T Consensus 7 ~k~~~C~~C~k~f~ 20 (36)
T 2elv_A 7 GLLYDCHICERKFK 20 (36)
T ss_dssp CCCEECSSSCCEES
T ss_pred CCCeECCCCCCccC
Confidence 34677777776654
Done!