BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036959
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 6/180 (3%)
Query: 51 RRVRVLNLSNIGLQGTIPPYL-GNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDN 109
+ ++ L+L+ G IP +L G L L+ N+ YG +P G L+S L N
Sbjct: 266 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 110 KFSGSFP-SWIGMLSKLQILSLRNNSFTGPIPWSFYNIS-SLKWINLGFNSLSGTLPNDM 167
FSG P + + L++L L N F+G +P S N+S SL ++L N+ SG + ++
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 385
Query: 168 CNRLPK--LQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDL 225
C PK LQE+YL +N G+IP +LS+C +L L +S N +G + ++G+LSKLRDL
Sbjct: 386 CQN-PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 80/167 (47%), Gaps = 1/167 (0%)
Query: 46 CGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFG 105
C ++ L L N G G IPP L N S LV L+ N L G +P+ LG L +L+
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 106 LEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPN 165
L N G P + + L+ L L N TG IP N ++L WI+L N L+G +P
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 166 DMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRL 212
RL L + L +N G IP+ L C L L ++ N F G +
Sbjct: 506 -WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 10/204 (4%)
Query: 30 NNWSISYPLCNWVGVSCGARHRRVRVLNLSNIGLQGTIPPYLGNLSF-LVYLNFGQNNLY 88
NN+S P+ + + R ++VL+LS G +P L NLS L+ L+ NN
Sbjct: 325 NNFSGELPMDTLL------KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 89 GHLPNELGQ--LHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNI 146
G + L Q + L+ L++N F+G P + S+L L L N +G IP S ++
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 147 SSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDN 206
S L+ + L N L G +P ++ + L+ + L N L G+IPS LS+C +L + +S+N
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 497
Query: 207 KFTGRLRENIGNLSKLRDLYTANN 230
+ TG + + IG L L L +NN
Sbjct: 498 RLTGEIPKWIGRLENLAILKLSNN 521
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 95/205 (46%), Gaps = 29/205 (14%)
Query: 56 LNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLP-NELGQLHRLKSFGLEDNKFSGS 114
L+LS G +PP+ G+ S L L NN G LP + L ++ LK L N+FSG
Sbjct: 296 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 355
Query: 115 FPSWIGMLSK---------------------------LQILSLRNNSFTGPIPWSFYNIS 147
P + LS LQ L L+NN FTG IP + N S
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 148 SLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNK 207
L ++L FN LSGT+P+ + L KL+++ L N L G+IP L + L L + N
Sbjct: 416 ELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 474
Query: 208 FTGRLRENIGNLSKLRDLYTANNHL 232
TG + + N + L + +NN L
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRL 499
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%)
Query: 63 LQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGML 122
L+G IP L + L L N+L G +P+ L L L +N+ +G P WIG L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 123 SKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSN 182
L IL L NNSF+G IP + SL W++L N +GT+P M + K+ ++
Sbjct: 511 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 183 K 183
+
Sbjct: 571 R 571
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 56 LNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSF 115
L++S L G IP +G++ +L LN G N++ G +P+E+G L L L NK G
Sbjct: 634 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 693
Query: 116 PSWIGMLSKLQILSLRNNSFTGPIP--WSFYNISSLKWIN 153
P + L+ L + L NN+ +GPIP F K++N
Sbjct: 694 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 47/224 (20%)
Query: 56 LNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSF 115
++LSN L G IP ++G L L L N+ G++P ELG L L N F+G+
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 116 PSWI-----------------------GML-----------------SKLQILSLRN--- 132
P+ + GM +L LS RN
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 133 ---NSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIP 189
+ G +F N S+ ++++ +N LSG +P ++ +P L + L N + G IP
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIP 670
Query: 190 SSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233
+ L L +S NK GR+ + + L+ L ++ +NN+L
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 28/169 (16%)
Query: 77 LVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFT 136
L +L+ NN +P LG L+ + NK SG F I ++L++L++ +N F
Sbjct: 199 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 137 GPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIP------- 189
GPIP + SL++++L N +G +P+ + L + L N +G +P
Sbjct: 258 GPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 190 ------------------SSLSHCIDLRRLWMSDNKFTGRLRENIGNLS 220
+L L+ L +S N+F+G L E++ NLS
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 65 GTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSK 124
G P N +++L+ N L G++P E+G + L L N SGS P +G L
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 125 LQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLP 164
L IL L +N G IP + ++ L I+L N+LSG +P
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 52/220 (23%)
Query: 41 WVGVSCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNEL----G 96
W+G R + +L LSN G IP LG+ L++L+ N G +P + G
Sbjct: 506 WIG-----RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 560
Query: 97 QLHR----------LKSFGLE-DNKFSGSFPSWIGMLSK-LQILSLRN------------ 132
++ +K+ G++ + +G+ + G+ S+ L LS RN
Sbjct: 561 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 620
Query: 133 ------------------NSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL 174
N +G IP ++ L +NLG N +SG++P+++ + L L
Sbjct: 621 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGL 679
Query: 175 QEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRE 214
+ L SNKL G+IP ++S L + +S+N +G + E
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 101/180 (56%), Gaps = 6/180 (3%)
Query: 51 RRVRVLNLSNIGLQGTIPPYL-GNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDN 109
+ ++ L+L+ G IP +L G L L+ N+ YG +P G L+S L N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 110 KFSGSFP-SWIGMLSKLQILSLRNNSFTGPIPWSFYNIS-SLKWINLGFNSLSGTLPNDM 167
FSG P + + L++L L N F+G +P S N+S SL ++L N+ SG + ++
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 168 CNRLPK--LQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDL 225
C PK LQE+YL +N G+IP +LS+C +L L +S N +G + ++G+LSKLRDL
Sbjct: 389 CQN-PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 80/167 (47%), Gaps = 1/167 (0%)
Query: 46 CGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFG 105
C ++ L L N G G IPP L N S LV L+ N L G +P+ LG L +L+
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 106 LEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPN 165
L N G P + + L+ L L N TG IP N ++L WI+L N L+G +P
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 166 DMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRL 212
RL L + L +N G IP+ L C L L ++ N F G +
Sbjct: 509 -WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/185 (34%), Positives = 99/185 (53%), Gaps = 4/185 (2%)
Query: 49 RHRRVRVLNLSNIGLQGTIPPYLGNLSF-LVYLNFGQNNLYGHLPNELGQ--LHRLKSFG 105
+ R ++VL+LS G +P L NLS L+ L+ NN G + L Q + L+
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 106 LEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPN 165
L++N F+G P + S+L L L N +G IP S ++S L+ + L N L G +P
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 166 DMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDL 225
++ + L+ + L N L G+IPS LS+C +L + +S+N+ TG + + IG L L L
Sbjct: 461 ELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
Query: 226 YTANN 230
+NN
Sbjct: 520 KLSNN 524
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 95/205 (46%), Gaps = 29/205 (14%)
Query: 56 LNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLP-NELGQLHRLKSFGLEDNKFSGS 114
L+LS G +PP+ G+ S L L NN G LP + L ++ LK L N+FSG
Sbjct: 299 LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 115 FPSWIGMLSK---------------------------LQILSLRNNSFTGPIPWSFYNIS 147
P + LS LQ L L+NN FTG IP + N S
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 148 SLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNK 207
L ++L FN LSGT+P+ + L KL+++ L N L G+IP L + L L + N
Sbjct: 419 ELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND 477
Query: 208 FTGRLRENIGNLSKLRDLYTANNHL 232
TG + + N + L + +NN L
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRL 502
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 61/121 (50%)
Query: 63 LQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGML 122
L+G IP L + L L N+L G +P+ L L L +N+ +G P WIG L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 123 SKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSN 182
L IL L NNSF+G IP + SL W++L N +GT+P M + K+ ++
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 183 K 183
+
Sbjct: 574 R 574
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 2/100 (2%)
Query: 56 LNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSF 115
L++S L G IP +G++ +L LN G N++ G +P+E+G L L L NK G
Sbjct: 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI 696
Query: 116 PSWIGMLSKLQILSLRNNSFTGPIP--WSFYNISSLKWIN 153
P + L+ L + L NN+ +GPIP F K++N
Sbjct: 697 PQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 47/224 (20%)
Query: 56 LNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSF 115
++LSN L G IP ++G L L L N+ G++P ELG L L N F+G+
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 116 PSWI-----------------------GML-----------------SKLQILSLRN--- 132
P+ + GM +L LS RN
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 133 ---NSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIP 189
+ G +F N S+ ++++ +N LSG +P ++ +P L + L N + G IP
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI-GSMPYLFILNLGHNDISGSIP 673
Query: 190 SSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233
+ L L +S NK GR+ + + L+ L ++ +NN+L
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 28/169 (16%)
Query: 77 LVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFT 136
L +L+ NN +P LG L+ + NK SG F I ++L++L++ +N F
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 137 GPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIP------- 189
GPIP + SL++++L N +G +P+ + L + L N +G +P
Sbjct: 261 GPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 190 ------------------SSLSHCIDLRRLWMSDNKFTGRLRENIGNLS 220
+L L+ L +S N+F+G L E++ NLS
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%)
Query: 65 GTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSK 124
G P N +++L+ N L G++P E+G + L L N SGS P +G L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 125 LQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLP 164
L IL L +N G IP + ++ L I+L N+LSG +P
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 97/220 (44%), Gaps = 52/220 (23%)
Query: 41 WVGVSCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNEL----G 96
W+G R + +L LSN G IP LG+ L++L+ N G +P + G
Sbjct: 509 WIG-----RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563
Query: 97 QLHR----------LKSFGLE-DNKFSGSFPSWIGMLSK-LQILSLRN------------ 132
++ +K+ G++ + +G+ + G+ S+ L LS RN
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623
Query: 133 ------------------NSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL 174
N +G IP ++ L +NLG N +SG++P+++ + L L
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGL 682
Query: 175 QEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRE 214
+ L SNKL G+IP ++S L + +S+N +G + E
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 109/230 (47%), Gaps = 10/230 (4%)
Query: 10 DQSALLMFKAHVIDPHSVLANNWSISYPLCN--WVGVSCGARHRRVRVLNLSNIGLQGTI 67
D+ ALL K + +P ++ ++W + CN W+GV C + RV NL GL
Sbjct: 7 DKQALLQIKKDLGNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 68 P-PYLGNLSFLVYLNF----GQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGML 122
P P +L+ L YLNF G NNL G +P + +L +L + SG+ P ++ +
Sbjct: 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 123 SKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSN 182
L L N+ +G +P S ++ +L I N +SG +P+ + + + N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 183 KLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232
+L G+IP + ++ ++L + +S N G G+ + ++ A N L
Sbjct: 185 RLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 45 SCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSF 104
S G+ + + +S L G IPP NL+ L +++ +N L G G +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 105 GLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLP 164
L N + +G+ L L LRNN G +P + L +N+ FN+L G +P
Sbjct: 227 HLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 82/202 (40%), Gaps = 22/202 (10%)
Query: 53 VRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFS 112
R+LNL +Q +L L L +N++ L L + L DN+ +
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125
Query: 113 GSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLG------------FNSLS 160
LSKL+ L LRNN ++F I SL+ ++LG F LS
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185
Query: 161 GT--LPNDMCN--RLP------KLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210
L MCN +P KL E+ L N L P S + L++LWM ++
Sbjct: 186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245
Query: 211 RLRENIGNLSKLRDLYTANNHL 232
R NL L ++ A+N+L
Sbjct: 246 IERNAFDNLQSLVEINLAHNNL 267
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 51/109 (46%), Gaps = 3/109 (2%)
Query: 74 LSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNN 133
LS L YLN NL +PN L L +L L N S P L LQ L + +
Sbjct: 184 LSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 134 SFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSN 182
+F N+ SL INL N+L+ LP+D+ L L+ I+LH N
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 77 LVYLNFGQNNLYGHLPNEL-GQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSF 135
L+YLN +N LP + +L L++ + DNK L L L L N
Sbjct: 65 LLYLN---DNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 136 TGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHC 195
P F +++ L +++LG+N L +LP + ++L L+E+ L++N+L +
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 196 IDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
+L+ L + +N+ +L KL+ L N
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 147 SSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDN 206
+ K ++L N LS +LP+ +RL KL+ +YL+ NKL +L LW++DN
Sbjct: 37 ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95
Query: 207 KFTG---RLRENIGNLSKLR 223
K + + + NL++LR
Sbjct: 96 KLQALPIGVFDQLVNLAELR 115
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 54 RVLNLSNIGLQ----GTIPPYL-GNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLED 108
+++NL+ + L ++PP + +L+ L YL+ G N L +L LK L +
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166
Query: 109 NKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFN 157
N+ L++L+ L L NN +F ++ LK + L N
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Query: 102 KSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSG 161
K L+ NK S L+KL++L L +N F + +L+ + + N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 162 TLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSK 221
LP + ++L L E+ L N+L P L L + N+ + L+
Sbjct: 100 -LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 222 LRDLYTANNHLQ 233
L++L NN L+
Sbjct: 159 LKELRLYNNQLK 170
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 114 SFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPK 173
+ PS I +K L L++N + +F+ ++ L+ + L N L TLP + L
Sbjct: 30 AIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 174 LQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233
L+ +++ NKL ++L L + N+ +L+KL L N LQ
Sbjct: 87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 78/202 (38%), Gaps = 22/202 (10%)
Query: 53 VRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFS 112
R LNL +Q +L L L +N + L L + L DN+ +
Sbjct: 37 TRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT 96
Query: 113 GSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLG------------FNSLS 160
LSKL+ L LRNN ++F + SL+ ++LG F L
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 161 GT--LPNDMCN--------RLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210
L MCN L +L+E+ L N+L P S LR+LW+ +
Sbjct: 157 NLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 211 RLRENIGNLSKLRDLYTANNHL 232
R +L L +L ++N+L
Sbjct: 217 IERNAFDDLKSLEELNLSHNNL 238
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 78/202 (38%), Gaps = 22/202 (10%)
Query: 53 VRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFS 112
R LNL +Q +L L L +N + L L + L DN+ +
Sbjct: 37 TRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLT 96
Query: 113 GSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLG------------FNSLS 160
LSKL+ L LRNN ++F + SL+ ++LG F L
Sbjct: 97 TVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLV 156
Query: 161 GT--LPNDMCN--------RLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210
L MCN L +L+E+ L N+L P S LR+LW+ +
Sbjct: 157 NLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT 216
Query: 211 RLRENIGNLSKLRDLYTANNHL 232
R +L L +L ++N+L
Sbjct: 217 IERNAFDDLKSLEELNLSHNNL 238
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 11/162 (6%)
Query: 71 LGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130
+ NL+ L L+ N + P L L L F N+ + P + ++L L +
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKI 228
Query: 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPS 190
NN T P + N+S L W+ +G N +S + L KL+ + + SN++ S
Sbjct: 229 GNNKITDLSPLA--NLSQLTWLEIGTNQISDI---NAVKDLTKLKXLNVGSNQISD--IS 281
Query: 191 SLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232
L++ L L++++N+ E IG L+ L L+ + NH+
Sbjct: 282 VLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 4/125 (3%)
Query: 109 NKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMC 168
+K S P+ G+ + QIL L +N T P F ++ +LK + LG N L G LP +
Sbjct: 28 SKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVF 84
Query: 169 NRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTA 228
+ L +L + L +N+L + + L+ L+M NK T L I L+ L L
Sbjct: 85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143
Query: 229 NNHLQ 233
N L+
Sbjct: 144 QNQLK 148
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 71 LGNLSFLVYLNFGQNNLYGHLPNEL-GQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129
L L+ L YL N L LPN + +L LK L +N+ L+ L L+
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139
Query: 130 LRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIP 189
L +N F +++L ++L +N L +LP + ++L +L+++ L+ N+L
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 190 SSLSHCIDLRRLWMSDN 206
L+ +W+ DN
Sbjct: 199 GVFDRLTSLQYIWLHDN 215
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 143 FYNISSLKWI-NLGFNSLSG----TLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCID 197
++IS+LK + NL + L+G +LPN + ++L L+E+ L N+L +
Sbjct: 75 LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134
Query: 198 LRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233
L L ++ N+ + L+ L +L + N LQ
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/215 (20%), Positives = 92/215 (42%), Gaps = 22/215 (10%)
Query: 11 QSALLMFKAHVIDPHSVLANNWSISYPLCNWVGVSCGARH--------RRVRVLNLSNIG 62
Q A +M + +I P + + ++ ++V + C +++R+ + +
Sbjct: 17 QCAPIMSEYEIICPANAENPTFRLTIQPKDYVQIMCNLTDTTDYQQLPKKLRIGEVDRVQ 76
Query: 63 LQGTIPP----------YLGNLSFLVYLNFGQNNLYGHLPNE-LGQLHRLKSFGLEDNKF 111
++ + P YLG +S + F +NL ++ + L +LH LK F +
Sbjct: 77 MRRCMLPGHTPIASILDYLGIVSPTTLI-FESDNLGMNITRQHLDRLHGLKRFRFTTRRL 135
Query: 112 SGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
+ + + + L L LR N P F ++ +L+ I G N L +P + ++
Sbjct: 136 THIPANLLTDMRNLSHLELRANIEEMP-SHLFDDLENLESIEFGSNKLR-QMPRGIFGKM 193
Query: 172 PKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDN 206
PKL+++ L SN+L L+++W+ N
Sbjct: 194 PKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 71 LGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130
G L LV L +N L G PN ++ L +NK L +L+ L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 131 RNNSFTGPIPWSFYNISSLKWINLGFN 157
+N + +P SF +++SL +NL N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 93 NELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWI 152
NELG R+ S GL G L L L L+ N TG P +F S ++ +
Sbjct: 39 NELG---RISSDGL------------FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL 83
Query: 153 NLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKF 208
LG N + + N M L +L+ + L+ N++ +P S H L L ++ N F
Sbjct: 84 QLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 33/80 (41%)
Query: 56 LNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSF 115
L L L G P S + L G+N + LH+LK+ L DN+ S
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 116 PSWIGMLSKLQILSLRNNSF 135
P L+ L L+L +N F
Sbjct: 119 PGSFEHLNSLTSLNLASNPF 138
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 114 SFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPK 173
S PS G+ + + L L++ +F ++ L W+NL +N L TL + + L +
Sbjct: 28 SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84
Query: 174 LQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233
L + L +N+L H L +L++ N+ L+KL++L N LQ
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 122 LSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHS 181
L++L L L NN F +++ L + LG N L +LP+ + +RL KL+E+ L++
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 182 NKLFGQIPSSLSHCIDLRRLWMSDNKF 208
N+L + +L+ L +S N+
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 114 SFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPK 173
S PS G+ + + L L++ +F ++ L W+NL +N L TL + + L +
Sbjct: 28 SVPS--GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTE 84
Query: 174 LQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233
L + L +N+L H L +L++ N+ L+KL++L N LQ
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 122 LSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHS 181
L++L L L NN F +++ L + LG N L +LP+ + +RL KL+E+ L++
Sbjct: 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNT 140
Query: 182 NKLFGQIPSSLSHCIDLRRLWMSDNKF 208
N+L + +L+ L +S N+
Sbjct: 141 NQLQSIPAGAFDKLTNLQTLSLSTNQL 167
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 77 LVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFT 136
L YLN G N+ +PN L L L+ + N F P LS L+ L + N+ +
Sbjct: 198 LKYLNLGMCNIKD-MPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255
Query: 137 GPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSN 182
+F ++SL +NL N+LS +LP+D+ L L E++LH N
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 79/202 (39%), Gaps = 22/202 (10%)
Query: 53 VRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFS 112
R LNL +Q +L L L G+N++ L L + L DN +
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136
Query: 113 GSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLG----------------F 156
LSKL+ L LRNN ++F + SL ++LG F
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196
Query: 157 N----SLSGTLPNDMCNRLP--KLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210
N +L DM N P L+E+ + N P S L++LW+ +++ +
Sbjct: 197 NLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256
Query: 211 RLRENIGNLSKLRDLYTANNHL 232
R L+ L +L A+N+L
Sbjct: 257 IERNAFDGLASLVELNLAHNNL 278
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 113 GSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLP 172
S P+ G+ + Q+L L N T P F +++ L ++NL N L+ LP + ++L
Sbjct: 32 ASVPA--GIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTA-LPVGVFDKLT 88
Query: 173 KLQEIYLHSNKL 184
KL + LH N+L
Sbjct: 89 KLTHLALHINQL 100
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 123 SKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSN 182
+ + +L+L +N +F S L +++GFN++S P ++C +LP L+ + L N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHN 88
Query: 183 KLFGQIPSSLSHCIDLRRLWMSDN 206
+L + + C +L L + N
Sbjct: 89 ELSQLSDKTFAFCTNLTELHLMSN 112
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 15/165 (9%)
Query: 53 VRVLNLSNIGLQGTIP----PYLGNLSF-----LVYLNFGQNNLYGHLPNELGQLHRLKS 103
VR LNL + +I P + + SF L +LN N++ G N L LK
Sbjct: 303 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 362
Query: 104 FGLEDNKFSG----SFPSWIGML-SKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNS 158
L N F+ + +++ + S L IL+L N + +F + L+ ++LG N
Sbjct: 363 LSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 421
Query: 159 LSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWM 203
+ L L + EIYL NK +S + L+RL +
Sbjct: 422 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 466
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 31/159 (19%)
Query: 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNN---LYGHLPNELGQLHRLKSFGLE 107
R + +L+LSN + L L L L+ NN L+ H N G ++ LK
Sbjct: 485 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH-ANPGGPIYFLKG---- 539
Query: 108 DNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDM 167
LS L IL+L +N F F ++ LK I+LG N+L TLP +
Sbjct: 540 --------------LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASV 584
Query: 168 CNRLPKLQEIYLHSN-------KLFGQIPSSLSHCIDLR 199
N L+ + L N K+FG +L+ +D+R
Sbjct: 585 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE-LDMR 622
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 123 SKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSN 182
+ + +L+L +N +F S L +++GFN++S P ++C +LP L+ + L N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHN 83
Query: 183 KLFGQIPSSLSHCIDLRRLWMSDN 206
+L + + C +L L + N
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSN 107
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 15/165 (9%)
Query: 53 VRVLNLSNIGLQGTIP----PYLGNLSF-----LVYLNFGQNNLYGHLPNELGQLHRLKS 103
VR LNL + +I P + + SF L +LN N++ G N L LK
Sbjct: 298 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357
Query: 104 FGLEDNKFSG----SFPSWIGML-SKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNS 158
L N F+ + +++ + S L IL+L N + +F + L+ ++LG N
Sbjct: 358 LSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 416
Query: 159 LSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWM 203
+ L L + EIYL NK +S + L+RL +
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 31/159 (19%)
Query: 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNN---LYGHLPNELGQLHRLKSFGLE 107
R + +L+LSN + L L L L+ NN L+ H N G ++ LK
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH-ANPGGPIYFLKG---- 534
Query: 108 DNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDM 167
LS L IL+L +N F F ++ LK I+LG N+L TLP +
Sbjct: 535 --------------LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASV 579
Query: 168 CNRLPKLQEIYLHSN-------KLFGQIPSSLSHCIDLR 199
N L+ + L N K+FG +L+ +D+R
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE-LDMR 617
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 123 SKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSN 182
+ + +L+L +N +F S L +++GFN++S P ++C +LP L+ + L N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHN 93
Query: 183 KLFGQIPSSLSHCIDLRRLWMSDN 206
+L + + C +L L + N
Sbjct: 94 ELSQLSDKTFAFCTNLTELHLMSN 117
Score = 30.8 bits (68), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 70/165 (42%), Gaps = 15/165 (9%)
Query: 53 VRVLNLSNIGLQGTIP----PYLGNLSF-----LVYLNFGQNNLYGHLPNELGQLHRLKS 103
VR LNL + +I P + + SF L +LN N++ G N L LK
Sbjct: 308 VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 367
Query: 104 FGLEDNKFSG----SFPSWIGML-SKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNS 158
L N F+ + +++ + S L IL+L N + +F + L+ ++LG N
Sbjct: 368 LSL-SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNE 426
Query: 159 LSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWM 203
+ L L + EIYL NK +S + L+RL +
Sbjct: 427 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 471
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 31/159 (19%)
Query: 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNN---LYGHLPNELGQLHRLKSFGLE 107
R + +L+LSN + L L L L+ NN L+ H N G ++ LK
Sbjct: 490 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH-ANPGGPIYFLKG---- 544
Query: 108 DNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDM 167
LS L IL+L +N F F ++ LK I+LG N+L TLP +
Sbjct: 545 --------------LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASV 589
Query: 168 CNRLPKLQEIYLHSN-------KLFGQIPSSLSHCIDLR 199
N L+ + L N K+FG +L+ +D+R
Sbjct: 590 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE-LDMR 627
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 123 SKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSN 182
S + +L+L +N P +F S L ++ GFNS+S P ++C LP L+ + L N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP-ELCQILPLLKVLNLQHN 83
Query: 183 KLFGQIPSSLSHCIDLRRLWMSDN---KFTGRLRENIGNLSKL 222
+L + C +L L + N K +N NL KL
Sbjct: 84 ELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKL 126
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 54/139 (38%), Gaps = 14/139 (10%)
Query: 74 LSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGML---------SK 124
L +L YLN NN+ N L LK L S +F S + S
Sbjct: 328 LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSL-----SKTFTSLQTLTNETFVSLAHSP 382
Query: 125 LQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKL 184
L L+L N + +F + L+ ++LG N + L L + EIYL NK
Sbjct: 383 LLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
Query: 185 FGQIPSSLSHCIDLRRLWM 203
SS + L+RL +
Sbjct: 443 LQLSTSSFALVPSLQRLML 461
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Query: 101 LKSFGLEDN-KFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSL 159
L+ L DN + P+ L +L L L P F +++L+++ L N+L
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 160 SGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNL 219
LP+D L L ++LH N++ + L RL + N+ +L
Sbjct: 141 QA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 199
Query: 220 SKLRDLYTANNHL 232
+L LY N+L
Sbjct: 200 GRLMTLYLFANNL 212
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Query: 101 LKSFGLEDN-KFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSL 159
L+ L DN + P+ L +L L L P F +++L+++ L N+L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 160 SGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNL 219
LP+D L L ++LH N++ + L RL + N+ +L
Sbjct: 142 QA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200
Query: 220 SKLRDLYTANNHL 232
+L LY N+L
Sbjct: 201 GRLMTLYLFANNL 213
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 120 GMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYL 179
G L L L L +N +P + +L +++ FN L+ +LP L +LQE+YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 180 HSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209
N+L P L+ L +L +++N+ T
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 120 GMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYL 179
G L L L L +N +P + +L +++ FN L+ +LP L +LQE+YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 180 HSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209
N+L P L+ L +L +++N+ T
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 120 GMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYL 179
G L L L L +N +P + +L +++ FN L+ +LP L +LQE+YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 180 HSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209
N+L P L+ L +L +++N+ T
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 120 GMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYL 179
G L L L L +N +P + +L +++ FN L+ +LP L +LQE+YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 180 HSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209
N+L P L+ L +L +++N+ T
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 13/174 (7%)
Query: 36 YPLCNWVGVSCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNEL 95
+P+C VS A H V N L +PP L + +++L+ +N LY L
Sbjct: 1 HPICE---VSKVASHLEV---NCDKRNLTA-LPPDLPKDTTILHLS--ENLLYTFSLATL 51
Query: 96 GQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLG 155
RL L+ + + G L L L L +N +P + +L +++
Sbjct: 52 MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS 108
Query: 156 FNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209
FN L+ +LP L +LQE+YL N+L P L+ L +L +++N T
Sbjct: 109 FNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 13/174 (7%)
Query: 36 YPLCNWVGVSCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNEL 95
+P+C VS A H V N L +PP L + +++L+ +N LY L
Sbjct: 1 HPICE---VSKVASHLEV---NCDKRNLTA-LPPDLPKDTTILHLS--ENLLYTFSLATL 51
Query: 96 GQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLG 155
RL L+ + + G L L L L +N +P + +L +++
Sbjct: 52 MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS 108
Query: 156 FNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209
FN L+ +LP L +LQE+YL N+L P L+ L +L +++N T
Sbjct: 109 FNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 120 GMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYL 179
G L L L L +N +P + +L +++ FN L+ +LP L +LQE+YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 180 HSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209
N+L P L+ L +L +++N T
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLT 161
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 78 VYLNFGQNNLYGHLPNEL-GQLHRLKSFGLEDNKFSGSFPSWI-GMLSKLQILSLRNNSF 135
YL+ N+L LPN + +L L L NK S P+ + L+ L L+L N
Sbjct: 31 TYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL 88
Query: 136 TGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHC 195
F ++ LK + L N L +LP+ + ++L +L+++ L+ N+L
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL 147
Query: 196 IDLRRLWMSDN 206
L+ +W+ DN
Sbjct: 148 TSLQYIWLHDN 158
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 120 GMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYL 179
G+ ++ L L NS F ++SL + LG N L +LPN + N+L L + L
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNL 83
Query: 180 HSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233
+N+L L+ L ++ N+ L++L+DL N L+
Sbjct: 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 13/174 (7%)
Query: 36 YPLCNWVGVSCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNEL 95
+P+C VS A H V N L +PP L + +++L+ +N LY L
Sbjct: 1 HPICE---VSKVASHLEV---NCDKRNLTA-LPPDLPKDTTILHLS--ENLLYTFSLATL 51
Query: 96 GQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLG 155
RL L+ + + G L L L L +N +P + +L +++
Sbjct: 52 MPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVS 108
Query: 156 FNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209
FN L+ +LP L +LQE+YL N+L P L+ L +L +++N T
Sbjct: 109 FNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 120 GMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYL 179
G L L L L +N +P + +L +++ FN L+ +LP L +LQE+YL
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 132
Query: 180 HSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209
N+L P L+ L +L +++N T
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLT 162
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 61/169 (36%), Gaps = 9/169 (5%)
Query: 53 VRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFS 112
+ L+L GLQ P L+ L YL NNL N L L L N+
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP 165
Query: 113 GSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLP 172
L L L L N P +F ++ L + L N+LS LP ++ L
Sbjct: 166 SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLR 224
Query: 173 KLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSK 221
LQ + L+ N + R LW KF G E NL +
Sbjct: 225 SLQYLRLNDNPWVCDCRA--------RPLWAWLQKFRGSSSEVPCNLPQ 265
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 175 QEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
Q I+LH N++ +S C +L LW+ N G L+ L L ++N
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDN 89
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 120 GMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYL 179
G L L L L +N +P + +L +++ FN L+ +LP L +LQE+YL
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 180 HSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209
N+L P L+ L +L +++N T
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT 161
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 8/149 (5%)
Query: 86 NLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSF--TGPIPWSF 143
N LP ++ + L+ + +N+ + S L+++ ++ L N +G +F
Sbjct: 110 NQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 144 YNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWM 203
+ L +I + +++ T+P + P L E++L NK+ +SL +L +L +
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 204 SDNKFTGRLRENIGNLSKLRDLYTANNHL 232
S N + ++ N LR+L+ NN L
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.9 bits (76), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 8/149 (5%)
Query: 86 NLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSF--TGPIPWSF 143
N LP ++ + L+ + +N+ + S L+++ ++ L N +G +F
Sbjct: 110 NQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 144 YNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWM 203
+ L +I + +++ T+P + P L E++L NK+ +SL +L +L +
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 204 SDNKFTGRLRENIGNLSKLRDLYTANNHL 232
S N + ++ N LR+L+ NN L
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 171 LPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
LP+L+ +YL +NK+ + LS L L + DN+ + + + L+KL++LY + N
Sbjct: 153 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 208
Query: 231 HL 232
H+
Sbjct: 209 HI 210
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 171 LPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
LP+L+ +YL +NK+ + LS L L + DN+ + + + L+KL++LY + N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 231 HL 232
H+
Sbjct: 207 HI 208
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 171 LPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
LP+L+ +YL +NK+ + LS L L + DN+ + + + L+KL++LY + N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 231 HL 232
H+
Sbjct: 207 HI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 171 LPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
LP+L+ +YL +NK+ + LS L L + DN+ + + + L+KL++LY + N
Sbjct: 151 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 231 HL 232
H+
Sbjct: 207 HI 208
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 171 LPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
LP+L+ +YL +NK+ + LS L L + DN+ + + + L+KL++LY + N
Sbjct: 133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 231 HL 232
H+
Sbjct: 189 HI 190
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 171 LPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
LP+L+ +YL +NK+ + LS L L + DN+ + + + L+KL++LY + N
Sbjct: 128 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183
Query: 231 HL 232
H+
Sbjct: 184 HI 185
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 171 LPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
LP+L+ +YL +NK+ + LS L L + DN+ + + + L+KL++LY + N
Sbjct: 133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 231 HL 232
H+
Sbjct: 189 HI 190
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 171 LPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
LP+L+ +YL +NK+ + LS L L + DN+ + + + L+KL++LY + N
Sbjct: 131 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 186
Query: 231 HL 232
H+
Sbjct: 187 HI 188
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 60/137 (43%), Gaps = 3/137 (2%)
Query: 71 LGNLSFLVYLNFGQNNLYGHLPNEL-GQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129
L L+ L YL N L LPN + +L LK L +N+ L+ L L
Sbjct: 81 LKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 130 LRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIP 189
L +N F +++L ++L N L +LP + ++L +L+++ L+ N+L
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 190 SSLSHCIDLRRLWMSDN 206
L +W+ +N
Sbjct: 199 GVFDRLTSLTHIWLLNN 215
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 143 FYNISSLKWI-NLGFNSLSG----TLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCID 197
++IS+LK + NL + L+G +LPN + ++L L+E+ L N+L +
Sbjct: 75 LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134
Query: 198 LRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233
L L++ N+ + L+ L L NN LQ
Sbjct: 135 LTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ 170
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 117 SWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQE 176
S + L+ L L L N F +++LK + L N L +LP+ + ++L L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTY 137
Query: 177 IYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233
+YL+ N+L +L RL + +N+ L++L+ L +N L+
Sbjct: 138 LYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 65/153 (42%), Gaps = 5/153 (3%)
Query: 79 YLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWI-GMLSKLQILSLRNNSFTG 137
YL G N L H + L +L L L N+ S P+ + L+ L+ L L N
Sbjct: 67 YLALGGNKL--HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS 123
Query: 138 PIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCID 197
F +++L ++ L N L +LP + ++L L + L +N+L
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQ 182
Query: 198 LRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
L++L ++DN+ L+ L ++ NN
Sbjct: 183 LKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 171 LPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
LP+L+ +YL +NK+ + LS L L + DN+ R + L+KL++LY + N
Sbjct: 131 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQI--RRIVPLARLTKLQNLYLSKN 186
Query: 231 HL 232
H+
Sbjct: 187 HI 188
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 153 NLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRL 212
N+ S+ +P D Q ++L++N++ P H ++L++L+ + NK T
Sbjct: 21 NIRLASVPAGIPTDK-------QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP 73
Query: 213 RENIGNLSKLRDLYTANNHLQ 233
L++L L +NHL+
Sbjct: 74 TGVFDKLTQLTQLDLNDNHLK 94
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 169 NRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTA 228
+ L LQ++Y +SNKL L +L ++DN R NL L +Y
Sbjct: 54 DHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113
Query: 229 NN 230
NN
Sbjct: 114 NN 115
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 171 LPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
LP+L+ +YL +NK+ + LS L L + DN+ + + + L+KL++LY + N
Sbjct: 128 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKN 183
Query: 231 HL 232
H+
Sbjct: 184 HI 185
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 106 LEDNKFSGSFPSWI-GMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLP 164
LE NK S P + L++L LSL N F ++ L + L N L +LP
Sbjct: 35 LESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLP 92
Query: 165 NDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDN 206
N + ++L +L+E+ L +N+L L+++W+ N
Sbjct: 93 NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 57/151 (37%), Gaps = 30/151 (19%)
Query: 56 LNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSF 115
L L + LQ L+ L L+ QN + L D F
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ----------------SLPDGVFD--- 73
Query: 116 PSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQ 175
L+KL IL L N F ++ LK + L N L ++P+ + +RL LQ
Sbjct: 74 -----KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQ 127
Query: 176 EIYLHSNKLFGQIPSSLSHCIDLRRLWMSDN 206
+I+LH+N P ID W++ N
Sbjct: 128 KIWLHTNPWDCSCPR-----IDYLSRWLNKN 153
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 120 GMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYL 179
G+ S L L +N F ++ L ++L N + +LP+ + ++L KL +YL
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83
Query: 180 HSNKL 184
H NKL
Sbjct: 84 HENKL 88
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 171 LPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
LP+L+ +YL +NK+ + LS L L + DN+ + + + L+KL++LY + N
Sbjct: 130 LPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185
Query: 231 HL 232
H+
Sbjct: 186 HI 187
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 82/184 (44%), Gaps = 33/184 (17%)
Query: 53 VRVLNLSNIG-LQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKF 111
+++L++S+ + PP + +FL NF QN + L RL++ L+ N
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFL---NFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389
Query: 112 SGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
F + +++K N+SSL+ +++ NSL+ + C
Sbjct: 390 KNFFK--VALMTK--------------------NMSSLETLDVSLNSLNSHAYDRTCAWA 427
Query: 172 PKLQEIYLHSNKLFGQIPSSLSHCI--DLRRLWMSDNKFTGRLRENIGNLSKLRDLYTAN 229
+ + L SN L G S+ C+ ++ L + +N+ + +++ +L L++L A+
Sbjct: 428 ESILVLNLSSNMLTG----SVFRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVAS 482
Query: 230 NHLQ 233
N L+
Sbjct: 483 NQLK 486
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 53 VRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFS 112
+RVL+LS+ L ++P LG+ L Y F +N+ LP E G L L+ G+E N
Sbjct: 272 LRVLDLSHNRL-TSLPAELGSCFQLKYFYFF-DNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Query: 113 GSFPSWIGMLSKLQ----ILSLRNNSFTGPIP 140
F + +L++ I LR+N P+P
Sbjct: 330 KQF---LKILTEKSVTGLIFYLRDNRPEIPLP 358
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 72 GNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLR 131
NL L+ + N + G LG L L L DN S SW G LS L+ L+L
Sbjct: 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHL---DLSDNHLSSLSSSWFGPLSSLKYLNLM 106
Query: 132 NNSF-TGPIPWSFYNISSLKWINLG 155
N + T + F N+++L+ + +G
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIG 131
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 72 GNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLR 131
NL L+ + N + G LG L L L DN S SW G LS L+ L+L
Sbjct: 76 ANLQVLILKSSRINTIEGDAFYSLGSLEHL---DLSDNHLSSLSSSWFGPLSSLKYLNLM 132
Query: 132 NNSF-TGPIPWSFYNISSLKWINLG 155
N + T + F N+++L+ + +G
Sbjct: 133 GNPYQTLGVTSLFPNLTNLQTLRIG 157
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 120 GMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYL 179
G+ + Q+L L +N T P F ++ L ++L N L+ LP + ++L +L ++ L
Sbjct: 35 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 93
Query: 180 HSNKLFGQIPSSLSHCIDLRRLWMSDN 206
+ N+L + + L +W+ +N
Sbjct: 94 NDNQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 174 LQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT--GRLRENIGNLSKLRDLYTANNH 231
L+E+++ N++ S + ++LR L+MS+NK T G + + + L KL DL A N
Sbjct: 95 LEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNP 151
Query: 232 L 232
L
Sbjct: 152 L 152
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 120 GMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYL 179
G+ + Q+L L +N T P F ++ L ++L N L+ LP + ++L +L ++ L
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85
Query: 180 HSNKLFGQIPSSLSHCIDLRRLWMSDNKF 208
+ N+L + + L +W+ +N +
Sbjct: 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 174 LQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT--GRLRENIGNLSKLRDLYTANNH 231
L+E+++ N++ S + ++LR L+MS+NK T G + + + L KL DL A N
Sbjct: 96 LEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNP 152
Query: 232 L 232
L
Sbjct: 153 L 153
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 52 RVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKF 111
R+ +L LS L +L + +++ N L L L + L N
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHI 535
Query: 112 SGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
S PS + +LS+ + ++LR N P+ + NI L+W L T + +C
Sbjct: 536 SIILPSLLPILSQQRTINLRQN----PLDCTCSNIYFLEWYKENMQKLEDT-EDTLCENP 590
Query: 172 PKLQEIYL 179
P L+ + L
Sbjct: 591 PLLRGVRL 598
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 122 LSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHS 181
L L++L+L N +FY + +L+ +NL +N L G L + LPK+ I L
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQK 347
Query: 182 NKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232
N + + L+ L + DN T I + + D++ + N L
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL 393
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 148 SLKWINLGFNSLSGTLPNDMC----NRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWM 203
SL+ + LG N L ++C L LQ +YL+ N L P SH LR L +
Sbjct: 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
Query: 204 SDNKFT 209
+ N+ T
Sbjct: 512 NSNRLT 517
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 113 GSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLP 172
S P+ G+ + Q+L L +N T P F ++ L ++L N L+ LP + ++L
Sbjct: 22 ASVPT--GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLT 78
Query: 173 KLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKF 208
+L ++ L+ N+L + + L +W+ +N +
Sbjct: 79 QLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPW 114
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 65/170 (38%), Gaps = 17/170 (10%)
Query: 67 IPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGM----- 121
+P + L L +N L LP + L+RL+ + P +
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 122 ----LSKLQILSLRNNSFTG--PIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQ 175
L LQ L L +TG +P S N+ +LK + + + LS P + LPKL+
Sbjct: 178 EHQGLVNLQSLRL---EWTGIRSLPASIANLQNLKSLKIRNSPLSALGP--AIHHLPKLE 232
Query: 176 EIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDL 225
E+ L P L+RL + D L +I L++L L
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 106 LEDNKFSGSFPSWIGMLSKLQILSLRNN--SFTGPIPWSFYNISSLKWINLGFN 157
LE NK L++L LSL +N SF G S + +SLK+++L FN
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 23/132 (17%)
Query: 69 PYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQIL 128
P L NL FL + + NNL LP+ L++ + DN + + L L
Sbjct: 231 PELQNLPFLTTI-YADNNLLKTLPD---LPPSLEALNVRDNYLTD----LPELPQSLTFL 282
Query: 129 SLRNNSFTG--PIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKL-- 184
+ N F+G +P + Y ++N N + +C+ P L+E+ + +NKL
Sbjct: 283 DVSENIFSGLSELPPNLY------YLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE 331
Query: 185 FGQIPSSLSHCI 196
+P L I
Sbjct: 332 LPALPPRLERLI 343
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
Query: 118 WIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEI 177
W+G L + +F G S +I+ K F+ LS + ++QE+
Sbjct: 230 WLGTFEDTDDQYLTSATFEGLCDMSVESINLQKH---RFSDLSSS----TFRCFTRVQEL 282
Query: 178 YLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230
L + L G +PS + L++L ++ N F + N + LRDLY N
Sbjct: 283 DLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGN 334
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 98 LHRLKSFGLEDNKFSG-SFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINL 154
L LK+ L N+ + S+IG LS +++LSL +N T P +F + SL +NL
Sbjct: 104 LESLKTLMLRSNRITCVGNDSFIG-LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
WS++NI++L W S+SGT+ D R
Sbjct: 465 WSWHNINTLSW---AIGSISGTMSEDTEKRF 492
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
WS++NI++L W S+SGT+ D R
Sbjct: 465 WSWHNINTLSW---AIGSISGTMSEDTEKRF 492
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
WS++NI++L W S+SGT+ D R
Sbjct: 465 WSWHNINTLSW---AIGSISGTMSEDTEKRF 492
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
WS++NI++L W S+SGT+ D R
Sbjct: 465 WSWHNINTLSW---AIGSISGTMSEDTEKRF 492
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
WS++NI++L W S+SGT+ D R
Sbjct: 465 WSWHNINTLSW---AIGSISGTMSEDTEKRF 492
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
WS++NI++L W S+SGT+ D R
Sbjct: 465 WSWHNINTLSW---AIGSISGTMSEDTEKRF 492
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
WS++NI++L W S+SGT+ D R
Sbjct: 465 WSWHNINTLSW---AIGSISGTMSEDTEKRF 492
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
WS++NI++L W S+SGT+ D R
Sbjct: 465 WSWHNINTLSW---AIGSISGTMSEDTEKRF 492
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
WS++NI++L W S+SGT+ D R
Sbjct: 465 WSWHNINTLSW---AIGSISGTMSEDTEKRF 492
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
WS++NI++L W S+SGT+ D R
Sbjct: 465 WSWHNINTLSW---AIGSISGTMSEDTEKRF 492
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
WS++NI++L W S+SGT+ D R
Sbjct: 502 WSWHNINTLSW---AIGSISGTMSEDTEKRF 529
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171
WS++NI++L W S+SGT+ D R
Sbjct: 463 WSWHNINTLSW---AIGSISGTMSEDTEKRF 490
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 61/141 (43%), Gaps = 28/141 (19%)
Query: 57 NLSNIGLQGTIPPYLGNLSFLV----YLNFGQNNLYGHLPN------ELGQLHRLKSFGL 106
NLS + + T P L NL L+ +LNF + + +PN LH L F
Sbjct: 50 NLSRLRAEWT-PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLF 108
Query: 107 EDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPND 166
D L L++L L NN +F +++ L+ + L N +S P +
Sbjct: 109 SD-------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVE 154
Query: 167 MC---NRLPKLQEIYLHSNKL 184
+ N+LPKL + L SNKL
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKL 175
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRR 200
+SF N S L+W++L + T+ + + L L + L N + P S S L
Sbjct: 50 YSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108
Query: 201 LWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233
L + K IG L L+ L A+N +
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 67 IPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQ 126
I P G L+ L L +N L P + L L L N S P + L+KLQ
Sbjct: 276 ISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 330
Query: 127 ILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL 174
L NN + S N++++ W++ G N +S P R+ +L
Sbjct: 331 RLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Query: 141 WSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRR 200
+SF N S L+W++L + T+ + + L L + L N + P S S L
Sbjct: 45 YSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 103
Query: 201 LWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233
L + K IG L L+ L A+N +
Sbjct: 104 LVAVETKLASLESFPIGQLITLKKLNVAHNFIH 136
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 34/145 (23%)
Query: 116 PSW---IGMLSKLQ-ILSLRNNSFTGPIPWSFYNISSLK--WINLGFN------SLSG-- 161
PSW +G LQ L L N + GP F+ + LK + N+G N +LSG
Sbjct: 116 PSWRVPLGRRDSLQAFLDLANANLPGP----FFTLPQLKDSFRNVGLNRSSDLVALSGGH 171
Query: 162 TLPNDMC----NRL----------PKLQEIYLHSNKLFGQIPSSLSHCID--LRRLWMSD 205
T + C +RL P L YL + + + +LS +D LR + D
Sbjct: 172 TFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFD 231
Query: 206 NKFTGRLRENIGNLSKLRDLYTANN 230
NK+ L E G + ++L+++ N
Sbjct: 232 NKYYVNLEEQKGLIQSDQELFSSPN 256
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 67 IPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQ 126
I P G L+ L L +N L P + L L L N S P + L+KLQ
Sbjct: 275 ISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 329
Query: 127 ILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL 174
L NN + S N++++ W++ G N +S P R+ +L
Sbjct: 330 RLFFSNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQL 375
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 122 LSKLQILSLRNNSFTGP-IPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLH 180
LS L++L + NSF +P F + +L +++L L P N L LQ + +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMA 502
Query: 181 SNKLFGQIPSSLSHCIDLRRLWMSDN 206
SN+L L+++W+ N
Sbjct: 503 SNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 88 YGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNN--SFTGPIPWSFYN 145
+G P +L LK NK +F L L+ L L N SF G S +
Sbjct: 316 FGQFPTL--KLKSLKRLTFTSNKGGNAFSEVD--LPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 146 ISSLKWINLGFNSL 159
+SLK+++L FN +
Sbjct: 372 TTSLKYLDLSFNGV 385
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 67 IPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQ 126
I P G L+ L L +N L P + L L L N S P + L+KLQ
Sbjct: 279 ISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 333
Query: 127 ILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL 174
L NN + S N++++ W++ G N +S P R+ +L
Sbjct: 334 RLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQL 379
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 67 IPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQ 126
I P G L+ L L +N L P + L L L N S P + L+KLQ
Sbjct: 276 ISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 330
Query: 127 ILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL 174
L NN + S N++++ W++ G N +S P R+ +L
Sbjct: 331 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 67 IPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQ 126
I P G L+ L L +N L P + L L L N S P + L+KLQ
Sbjct: 276 ISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 330
Query: 127 ILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL 174
L NN + S N++++ W++ G N +S P R+ +L
Sbjct: 331 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 88 YGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNN--SFTGPIPWSFYN 145
+G P +L LK NK +F L L+ L L N SF G S +
Sbjct: 316 FGQFPT--LKLKSLKRLTFTSNKGGNAFSEVD--LPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 146 ISSLKWINLGFN 157
+SLK+++L FN
Sbjct: 372 TTSLKYLDLSFN 383
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 67 IPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQ 126
I P G L+ L L +N L P + L L L N S P + L+KLQ
Sbjct: 275 ISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 329
Query: 127 ILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL 174
L NN + S N++++ W++ G N +S P R+ +L
Sbjct: 330 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQL 375
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 67 IPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQ 126
I P G L+ L L +N L P + L L L N S P + L+KLQ
Sbjct: 280 ISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334
Query: 127 ILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL 174
L NN + S N++++ W++ G N +S P R+ +L
Sbjct: 335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQL 380
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,214,055
Number of Sequences: 62578
Number of extensions: 297636
Number of successful extensions: 844
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 555
Number of HSP's gapped (non-prelim): 254
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)