Query 036959
Match_columns 233
No_of_seqs 179 out of 2679
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 07:07:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.8E-29 1.2E-33 224.2 17.7 222 8-232 28-272 (968)
2 PLN00113 leucine-rich repeat r 99.9 5.6E-23 1.2E-27 185.5 13.4 181 50-231 139-319 (968)
3 KOG4194 Membrane glycoprotein 99.8 1.9E-20 4.2E-25 152.2 3.3 158 75-233 173-330 (873)
4 KOG0617 Ras suppressor protein 99.8 1.5E-21 3.3E-26 136.0 -4.8 163 50-219 32-195 (264)
5 KOG4194 Membrane glycoprotein 99.8 5.7E-20 1.2E-24 149.5 3.0 186 44-230 166-351 (873)
6 KOG0617 Ras suppressor protein 99.8 3.3E-21 7.2E-26 134.4 -5.0 157 71-233 29-186 (264)
7 KOG0444 Cytoskeletal regulator 99.7 8.4E-19 1.8E-23 144.2 -1.1 178 51-233 78-258 (1255)
8 KOG0444 Cytoskeletal regulator 99.7 1.2E-18 2.6E-23 143.3 -2.5 177 50-233 102-304 (1255)
9 KOG4237 Extracellular matrix p 99.7 6.3E-18 1.4E-22 131.7 -0.6 182 51-233 67-335 (498)
10 KOG0472 Leucine-rich repeat pr 99.6 5.3E-17 1.2E-21 127.0 2.2 87 144-233 432-541 (565)
11 KOG0472 Leucine-rich repeat pr 99.6 2.6E-18 5.6E-23 134.3 -6.2 172 52-232 138-309 (565)
12 PLN03150 hypothetical protein; 99.6 5E-15 1.1E-19 127.3 12.8 150 6-160 369-528 (623)
13 cd00116 LRR_RI Leucine-rich re 99.6 3.5E-16 7.7E-21 124.7 1.9 184 50-233 80-291 (319)
14 cd00116 LRR_RI Leucine-rich re 99.6 9.3E-16 2E-20 122.2 2.1 184 50-233 50-263 (319)
15 PLN03210 Resistant to P. syrin 99.5 7.7E-14 1.7E-18 127.8 13.5 104 51-157 611-714 (1153)
16 KOG4237 Extracellular matrix p 99.5 2.8E-16 6E-21 122.7 -3.4 182 50-232 90-358 (498)
17 PLN03210 Resistant to P. syrin 99.5 2.5E-13 5.4E-18 124.5 13.3 175 51-231 589-813 (1153)
18 PRK15370 E3 ubiquitin-protein 99.5 9.8E-14 2.1E-18 120.5 9.0 164 51-233 199-380 (754)
19 PRK15370 E3 ubiquitin-protein 99.5 1.5E-13 3.2E-18 119.4 9.5 163 51-233 178-359 (754)
20 PRK15387 E3 ubiquitin-protein 99.5 2E-13 4.3E-18 118.3 9.8 167 50-233 241-458 (788)
21 KOG0618 Serine/threonine phosp 99.5 7.9E-16 1.7E-20 131.2 -5.3 176 51-231 241-487 (1081)
22 KOG0618 Serine/threonine phosp 99.4 6.2E-15 1.3E-19 125.9 -1.6 176 50-230 309-510 (1081)
23 KOG0532 Leucine-rich repeat (L 99.4 1.9E-14 4.2E-19 117.2 -3.7 170 54-233 78-247 (722)
24 COG4886 Leucine-rich repeat (L 99.3 1.3E-12 2.9E-17 107.2 5.8 173 51-232 116-289 (394)
25 PRK15387 E3 ubiquitin-protein 99.3 8.3E-12 1.8E-16 108.4 10.6 136 54-210 204-356 (788)
26 PF14580 LRR_9: Leucine-rich r 99.3 2.4E-12 5.1E-17 92.6 5.7 122 100-226 20-146 (175)
27 PLN03150 hypothetical protein; 99.2 7.7E-11 1.7E-15 101.7 9.4 108 77-184 420-527 (623)
28 PF14580 LRR_9: Leucine-rich r 99.2 3.7E-11 8E-16 86.5 6.2 104 52-160 20-126 (175)
29 PF13855 LRR_8: Leucine rich r 99.2 2.1E-11 4.6E-16 72.7 4.1 61 172-232 1-61 (61)
30 KOG1909 Ran GTPase-activating 99.2 4.2E-12 9E-17 98.1 0.4 181 51-232 92-310 (382)
31 KOG3207 Beta-tubulin folding c 99.2 2.5E-12 5.3E-17 102.0 -1.0 181 50-232 120-313 (505)
32 KOG0532 Leucine-rich repeat (L 99.1 1.8E-12 4E-17 105.9 -3.1 154 53-216 100-253 (722)
33 COG4886 Leucine-rich repeat (L 99.1 4.3E-11 9.4E-16 98.3 4.2 171 55-233 97-268 (394)
34 KOG3207 Beta-tubulin folding c 99.1 9.5E-12 2.1E-16 98.7 -0.8 184 48-232 143-338 (505)
35 KOG1259 Nischarin, modulator o 99.0 3.3E-11 7.1E-16 91.9 0.0 127 100-233 285-412 (490)
36 KOG1909 Ran GTPase-activating 99.0 1.2E-10 2.6E-15 90.1 2.3 162 72-233 89-283 (382)
37 KOG1259 Nischarin, modulator o 99.0 3.1E-11 6.7E-16 92.0 -1.0 133 72-211 281-414 (490)
38 PF13855 LRR_8: Leucine rich r 98.9 1.2E-09 2.6E-14 65.0 3.8 59 52-110 2-60 (61)
39 KOG2120 SCF ubiquitin ligase, 98.8 2.8E-11 6.1E-16 92.0 -6.5 179 51-231 185-374 (419)
40 KOG0531 Protein phosphatase 1, 98.7 1.7E-09 3.6E-14 89.4 -0.5 170 51-232 95-267 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.7 1.7E-08 3.8E-13 89.7 4.9 107 51-158 545-653 (889)
42 KOG2120 SCF ubiquitin ligase, 98.6 9E-10 1.9E-14 84.0 -5.7 155 76-230 186-348 (419)
43 COG5238 RNA1 Ran GTPase-activa 98.6 8.8E-08 1.9E-12 72.4 4.7 180 51-231 30-253 (388)
44 PF08263 LRRNT_2: Leucine rich 98.6 8.6E-08 1.9E-12 52.5 3.4 39 8-47 2-43 (43)
45 KOG0531 Protein phosphatase 1, 98.6 4.2E-09 9.1E-14 87.0 -2.8 172 51-233 72-245 (414)
46 KOG1859 Leucine-rich repeat pr 98.5 1.9E-09 4E-14 91.2 -5.0 122 104-232 169-291 (1096)
47 PF12799 LRR_4: Leucine Rich r 98.4 3.7E-07 8E-12 50.1 3.9 35 197-232 2-36 (44)
48 KOG2982 Uncharacterized conser 98.4 3.6E-08 7.8E-13 75.4 -0.6 85 51-135 71-158 (418)
49 KOG1859 Leucine-rich repeat pr 98.4 9.2E-09 2E-13 87.1 -4.5 125 77-209 166-292 (1096)
50 KOG1644 U2-associated snRNP A' 98.4 8.9E-07 1.9E-11 64.1 6.0 82 101-185 44-126 (233)
51 KOG2982 Uncharacterized conser 98.4 1.5E-07 3.2E-12 72.1 1.5 88 97-184 69-158 (418)
52 KOG4579 Leucine-rich repeat (L 98.3 1.5E-08 3.2E-13 68.8 -3.9 112 52-167 28-142 (177)
53 KOG4658 Apoptotic ATPase [Sign 98.3 9.5E-07 2.1E-11 78.9 5.4 178 51-232 523-729 (889)
54 KOG4579 Leucine-rich repeat (L 98.2 5.4E-08 1.2E-12 66.1 -3.3 110 100-214 28-141 (177)
55 KOG3665 ZYG-1-like serine/thre 98.2 8.8E-07 1.9E-11 77.1 2.0 133 76-211 123-265 (699)
56 COG5238 RNA1 Ran GTPase-activa 98.1 3.2E-06 6.9E-11 64.2 3.8 160 70-231 87-283 (388)
57 PF13306 LRR_5: Leucine rich r 98.1 1.6E-05 3.6E-10 54.5 6.5 122 95-223 8-129 (129)
58 PF12799 LRR_4: Leucine Rich r 98.0 4.1E-06 9E-11 45.9 2.6 37 172-209 1-37 (44)
59 KOG1644 U2-associated snRNP A' 98.0 1.2E-05 2.7E-10 58.3 5.3 127 54-183 22-151 (233)
60 PRK15386 type III secretion pr 97.8 9.4E-05 2E-09 60.3 7.9 75 71-158 48-123 (426)
61 KOG3665 ZYG-1-like serine/thre 97.8 8.6E-06 1.9E-10 71.1 2.2 81 51-133 148-230 (699)
62 PRK15386 type III secretion pr 97.8 9.6E-05 2.1E-09 60.2 7.6 72 51-135 52-124 (426)
63 PF13306 LRR_5: Leucine rich r 97.7 9.5E-05 2.1E-09 50.7 6.0 122 70-198 7-128 (129)
64 KOG2739 Leucine-rich acidic nu 97.3 0.00023 5.1E-09 53.8 2.9 80 97-178 63-149 (260)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00025 5.3E-09 53.7 1.8 105 120-227 40-150 (260)
66 KOG2123 Uncharacterized conser 97.1 3.6E-05 7.8E-10 58.8 -3.1 100 122-226 18-123 (388)
67 KOG2123 Uncharacterized conser 97.0 1.5E-05 3.2E-10 60.9 -5.6 102 97-202 17-123 (388)
68 PF00560 LRR_1: Leucine Rich R 96.3 0.0025 5.3E-08 29.1 1.4 20 198-218 2-21 (22)
69 PF13504 LRR_7: Leucine rich r 95.2 0.016 3.4E-07 24.5 1.6 14 220-233 1-14 (17)
70 KOG1947 Leucine rich repeat pr 95.2 0.0043 9.4E-08 52.3 -0.6 130 98-227 187-328 (482)
71 KOG4308 LRR-containing protein 94.7 5.5E-05 1.2E-09 63.4 -13.0 181 53-233 89-303 (478)
72 KOG1947 Leucine rich repeat pr 94.2 0.028 6.2E-07 47.3 2.1 38 146-183 268-306 (482)
73 PF13516 LRR_6: Leucine Rich r 93.8 0.016 3.6E-07 26.8 -0.1 20 196-215 2-21 (24)
74 KOG3864 Uncharacterized conser 93.7 0.02 4.3E-07 42.0 0.2 83 123-205 101-185 (221)
75 KOG3864 Uncharacterized conser 92.8 0.0073 1.6E-07 44.3 -3.2 84 99-183 101-187 (221)
76 smart00369 LRR_TYP Leucine-ric 92.6 0.12 2.7E-06 24.3 2.0 21 196-216 2-22 (26)
77 smart00370 LRR Leucine-rich re 92.6 0.12 2.7E-06 24.3 2.0 21 196-216 2-22 (26)
78 KOG4341 F-box protein containi 91.7 0.079 1.7E-06 43.3 1.1 109 122-230 319-436 (483)
79 KOG4308 LRR-containing protein 89.8 0.00099 2.1E-08 56.0 -11.7 161 51-211 115-305 (478)
80 smart00365 LRR_SD22 Leucine-ri 89.7 0.3 6.4E-06 23.2 1.6 13 220-232 2-14 (26)
81 smart00368 LRR_RI Leucine rich 89.0 0.35 7.7E-06 23.3 1.7 13 220-232 2-14 (28)
82 KOG0473 Leucine-rich repeat pr 88.5 0.0083 1.8E-07 45.1 -6.3 87 119-209 38-124 (326)
83 KOG0473 Leucine-rich repeat pr 88.5 0.011 2.4E-07 44.5 -5.6 86 48-136 39-124 (326)
84 KOG3763 mRNA export factor TAP 87.5 0.4 8.6E-06 40.7 2.1 66 144-210 215-284 (585)
85 KOG4341 F-box protein containi 87.4 0.28 6.1E-06 40.2 1.2 133 51-183 294-437 (483)
86 smart00364 LRR_BAC Leucine-ric 74.7 1.9 4.2E-05 20.4 1.0 12 221-232 3-14 (26)
87 smart00367 LRR_CC Leucine-rich 73.5 2.2 4.8E-05 19.9 1.1 13 219-231 1-13 (26)
88 KOG3763 mRNA export factor TAP 71.5 1.7 3.7E-05 37.1 0.7 65 169-233 215-283 (585)
89 TIGR00864 PCC polycystin catio 33.8 34 0.00073 35.7 2.5 32 129-160 1-32 (2740)
90 KOG4242 Predicted myosin-I-bin 24.9 1.5E+02 0.0034 25.5 4.5 21 51-71 165-185 (553)
91 TIGR02167 Liste_lipo_26 bacter 21.1 42 0.0009 15.7 0.4 12 217-228 3-14 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=5.8e-29 Score=224.16 Aligned_cols=222 Identities=33% Similarity=0.604 Sum_probs=149.1
Q ss_pred hhhHHHHHHHHHhcCCCchhhcCCCCCCCCCCCccceeecCCCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCcc
Q 036959 8 TTDQSALLMFKAHVIDPHSVLANNWSISYPLCNWVGVSCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNL 87 (233)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~ 87 (233)
..|+.+|++|++++.+|..++.+ |+...++|.|.|+.|... ++++.|+++++.+.+..+..+..+++|+.|++++|.+
T Consensus 28 ~~~~~~l~~~~~~~~~~~~~~~~-w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 28 AEELELLLSFKSSINDPLKYLSN-WNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred HHHHHHHHHHHHhCCCCcccCCC-CCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 47889999999999888888876 998889999999999753 6899999999998888888888889999999999888
Q ss_pred CCCCchhhh-ccCCccEEEecCCcccCC----------------------cchhhcCCCCCcEEEeeeccccccCCcccc
Q 036959 88 YGHLPNELG-QLHRLKSFGLEDNKFSGS----------------------FPSWIGMLSKLQILSLRNNSFTGPIPWSFY 144 (233)
Q Consensus 88 ~~~~~~~l~-~l~~L~~L~l~~~~i~~~----------------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 144 (233)
.+.+|..+. .+++|++|++++|.+.+. .|..+..+++|++|++++|.+.+.+|..+.
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 185 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh
Confidence 777776544 667777777776665533 333444445555555555554444444555
Q ss_pred CCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCE
Q 036959 145 NISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRD 224 (233)
Q Consensus 145 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 224 (233)
++++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|..++.+++|++|++++|.+++.+|..++++++|+.
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 264 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence 555555555555555444444333 4555555555555555555555555555666666666555555555666666666
Q ss_pred EEecCCcC
Q 036959 225 LYTANNHL 232 (233)
Q Consensus 225 L~l~~n~l 232 (233)
|++++|.+
T Consensus 265 L~L~~n~l 272 (968)
T PLN00113 265 LFLYQNKL 272 (968)
T ss_pred EECcCCee
Confidence 66665544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=5.6e-23 Score=185.55 Aligned_cols=181 Identities=34% Similarity=0.532 Sum_probs=100.3
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
.++++.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 35566666666666555666666666666666666666555666666666666666666665555555555566666666
Q ss_pred eeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 130 LRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
+++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 666655555555555555555555555555444444333 4455555555555554444444444444555555544444
Q ss_pred CccchhccCcCCCCEEEecCCc
Q 036959 210 GRLRENIGNLSKLRDLYTANNH 231 (233)
Q Consensus 210 ~~~~~~l~~~~~L~~L~l~~n~ 231 (233)
+.+|..+..+++|+.|++++|.
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNN 319 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCc
Confidence 4444444444444444444443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.9e-20 Score=152.18 Aligned_cols=158 Identities=22% Similarity=0.216 Sum_probs=85.3
Q ss_pred CCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEe
Q 036959 75 SFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINL 154 (233)
Q Consensus 75 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 154 (233)
.++++|++++|.|+......|..+.+|-.|.+++|.++...+..|..+++|+.|++.+|++...---.|..+++|+.+.+
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 33444444444444333333444444444444444444222233444444555555444443111223445555555555
Q ss_pred cCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 155 GFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
.+|.+. .+.+..|-.+.++++|+|..|++......++..++.|+.|++++|.|..+-++.+..+++|++|+|++|+|+
T Consensus 253 qrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 253 QRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence 555554 444444445666667777766666544556666677777777777777666667777777777777777664
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.78 E-value=1.5e-21 Score=136.03 Aligned_cols=163 Identities=28% Similarity=0.522 Sum_probs=129.8
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
+..++.|.+++|.++ .+|+.++.+.+|+.|++.+|.+. .+|..++.+++|+.|++..|++. .+|..|.+++.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 467788888888887 77777888888888888888886 67778888888888888888887 7888888888888888
Q ss_pred eeeccccc-cCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcc
Q 036959 130 LRNNSFTG-PIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKF 208 (233)
Q Consensus 130 l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 208 (233)
+.+|.+.. .+|+.|..+..|+.|.+++|.+. .+|.++. .+++|+.|.+.+|.+. .+|..++.+..|++|++.+|++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg-~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVG-KLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhh-hhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 88887763 46777777778888888888886 7777776 7888888888888876 6688888888888888888888
Q ss_pred cCccchhccCc
Q 036959 209 TGRLRENIGNL 219 (233)
Q Consensus 209 ~~~~~~~l~~~ 219 (233)
+ .+|..++++
T Consensus 186 ~-vlppel~~l 195 (264)
T KOG0617|consen 186 T-VLPPELANL 195 (264)
T ss_pred e-ecChhhhhh
Confidence 7 555555543
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=5.7e-20 Score=149.48 Aligned_cols=186 Identities=22% Similarity=0.213 Sum_probs=102.6
Q ss_pred eeecCCCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCC
Q 036959 44 VSCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLS 123 (233)
Q Consensus 44 ~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~ 123 (233)
..|.+...+++.|+|++|.|+..-...|..+.+|..|.++.|.++..-+..|..+++|+.|++..|.|...--..|..++
T Consensus 166 ~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~ 245 (873)
T KOG4194|consen 166 KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP 245 (873)
T ss_pred CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCch
Confidence 34444556788888888888877677788888888888888888755555677678888887777766522123455555
Q ss_pred CCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEc
Q 036959 124 KLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWM 203 (233)
Q Consensus 124 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 203 (233)
+|+.|.+.+|++...-.+.|..+.++++|++..|++...-...++ .++.|+.|+++.|.|..+-++.+..+++|+.|+|
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdL 324 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDL 324 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEec
Confidence 555555555555432233444444555555555544421122222 4444444444444444444444444444444444
Q ss_pred cCCcccCccchhccCcCCCCEEEecCC
Q 036959 204 SDNKFTGRLRENIGNLSKLRDLYTANN 230 (233)
Q Consensus 204 ~~n~~~~~~~~~l~~~~~L~~L~l~~n 230 (233)
++|.++...++.|..+..|++|.|+.|
T Consensus 325 s~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 325 SSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred cccccccCChhHHHHHHHhhhhccccc
Confidence 444444433333333333333333333
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=3.3e-21 Score=134.38 Aligned_cols=157 Identities=29% Similarity=0.525 Sum_probs=142.0
Q ss_pred CCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCc
Q 036959 71 LGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLK 150 (233)
Q Consensus 71 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 150 (233)
+..+.+++.|.+++|.++ .+|+.+..+.+|+.|++.+|++. .+|..+++++.|+.|+++-|++. .+|.+|+.++-|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 456788899999999998 66777899999999999999999 88999999999999999999988 8999999999999
Q ss_pred EEEecCCcCcC-cCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecC
Q 036959 151 WINLGFNSLSG-TLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTAN 229 (233)
Q Consensus 151 ~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 229 (233)
.|+++.|++.. .+|..+| -+..|+.|++++|.+. .+|..++.+++|++|.+++|.+. .+|+.++.+..|++|.+.|
T Consensus 106 vldltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred hhhccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccc
Confidence 99999998753 4666666 6888999999999986 78999999999999999999987 7899999999999999999
Q ss_pred CcCC
Q 036959 230 NHLQ 233 (233)
Q Consensus 230 n~l~ 233 (233)
|+++
T Consensus 183 nrl~ 186 (264)
T KOG0617|consen 183 NRLT 186 (264)
T ss_pred ceee
Confidence 9874
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.70 E-value=8.4e-19 Score=144.21 Aligned_cols=178 Identities=24% Similarity=0.329 Sum_probs=111.1
Q ss_pred ceEeEEEecCCccc-ccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcc-hhhcCCCCCcEE
Q 036959 51 RRVRVLNLSNIGLQ-GTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFP-SWIGMLSKLQIL 128 (233)
Q Consensus 51 ~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L 128 (233)
+.++.++++.|++. .-+|..+..+..|..|++++|.+. ..|..+..-+++-.|++++|+|. .+| +.|.++.-|-.|
T Consensus 78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfL 155 (1255)
T KOG0444|consen 78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFL 155 (1255)
T ss_pred hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhh
Confidence 34444444444443 224444555566666666666654 45555555566666666666665 333 334455556666
Q ss_pred EeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccc-ccCCCCcccccCCcEEEccCCc
Q 036959 129 SLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLF-GQIPSSLSHCIDLRRLWMSDNK 207 (233)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~l~~n~ 207 (233)
+++.|++. .+|+.++.+.+|+.|.+++|.+.-.....+. .+++|+.|++++.+.+ ..+|..+..+.+|+.+|++.|.
T Consensus 156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 66666655 5555666666666666666655311111111 3455666666665543 3567888888999999999999
Q ss_pred ccCccchhccCcCCCCEEEecCCcCC
Q 036959 208 FTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 208 ~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+. .+|+++..+++|+.|+|++|+|+
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCcee
Confidence 87 78999999999999999999875
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.68 E-value=1.2e-18 Score=143.32 Aligned_cols=177 Identities=29% Similarity=0.431 Sum_probs=112.4
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCch-hhhccCCccEEEecCCcccCCcchhhcCCC-----
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPN-ELGQLHRLKSFGLEDNKFSGSFPSWIGMLS----- 123 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~----- 123 (233)
...++.|++++|.+. ++|..+..-+++-+|++++|.|. .+|. .|-++.-|-.||+++|.+. .+|..+..+.
T Consensus 102 l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred cccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 345666666666665 55655555556666666666554 2232 2334444444555555444 3344344444
Q ss_pred -------------------CCcEEEeeecccc-ccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccc
Q 036959 124 -------------------KLQILSLRNNSFT-GPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNK 183 (233)
Q Consensus 124 -------------------~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 183 (233)
+|++|.+++++-+ ..+|..+..+.+|..++++.|++. .+|..++ .+++|+.|+|++|.
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNK 256 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCc
Confidence 4444444444322 345666667778888888888887 7777777 78888888888888
Q ss_pred ccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 184 LFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 184 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
++. +....+.+.+|++|+++.|.++ .+|+++..+++|+.|.+.+|+++
T Consensus 257 ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 257 ITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred eee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 873 3334556777888888888877 67888888888888888777764
No 9
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.66 E-value=6.3e-18 Score=131.71 Aligned_cols=182 Identities=23% Similarity=0.298 Sum_probs=121.0
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecC-CcccCCcchhhc---------
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLED-NKFSGSFPSWIG--------- 120 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-~~i~~~~~~~~~--------- 120 (233)
+....|.|..|.|+...+..|..+++|+.|++++|.|....|.+|.++++|..|.+++ |+|+....+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 5678899999999977888999999999999999999999999999999999888888 777743333343
Q ss_pred ---------------CCCCCcEEEeeeccccccCCc-cccCCCCCcEEEecCCcCc------------------------
Q 036959 121 ---------------MLSKLQILSLRNNSFTGPIPW-SFYNISSLKWINLGFNSLS------------------------ 160 (233)
Q Consensus 121 ---------------~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~------------------------ 160 (233)
.++++..|.+.+|.+. .++. .+..+..++.+.+..|.+.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 3445555555555554 2222 3333333333333333210
Q ss_pred -------------------------------------CcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEc
Q 036959 161 -------------------------------------GTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWM 203 (233)
Q Consensus 161 -------------------------------------~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 203 (233)
+.-|..-+..+++|+.|++++|+++++-+.+|.....+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 0112222346677777777777777666667766666666666
Q ss_pred cCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 204 SDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 204 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
..|++...--.+|.++..|+.|+|.+|+|+
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 666665444456666666666666666654
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=5.3e-17 Score=127.03 Aligned_cols=87 Identities=28% Similarity=0.446 Sum_probs=66.0
Q ss_pred cCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccc-----------------------ccCCCCcccccCCcE
Q 036959 144 YNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLF-----------------------GQIPSSLSHCIDLRR 200 (233)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-----------------------~~~~~~~~~~~~L~~ 200 (233)
..+++|..|++++|-+. .+|.+++ .+..|+.|+++.|.+. ...++.+..+.+|.+
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~-~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMG-SLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhh-hhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 34566777777777766 6777666 5555777777766543 223334778899999
Q ss_pred EEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 201 LWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 201 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
||+.+|.+. .+|..++++.+|++|+++||+|.
T Consensus 510 LDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 510 LDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 999999997 67889999999999999999984
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=2.6e-18 Score=134.29 Aligned_cols=172 Identities=30% Similarity=0.429 Sum_probs=131.4
Q ss_pred eEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEee
Q 036959 52 RVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLR 131 (233)
Q Consensus 52 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 131 (233)
.++.++-.+|++. .+|+.+..+..+..+++.+|.+....|..+ .++.|++++...|-+. .+|..++.+.+|+-|++.
T Consensus 138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhh
Confidence 3444555555555 555556666666666666666653333333 3667777777776666 667777777777777778
Q ss_pred eccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCc
Q 036959 132 NNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGR 211 (233)
Q Consensus 132 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 211 (233)
+|++. .+| .|..|..|.++.++.|.+. .+|.....+++++..||+.+|+++ ..|+.+..+.+|+.||+++|.++ .
T Consensus 215 ~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~ 289 (565)
T KOG0472|consen 215 RNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-S 289 (565)
T ss_pred hcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-c
Confidence 88776 556 7777888888888888887 888888889999999999999997 77998899999999999999998 6
Q ss_pred cchhccCcCCCCEEEecCCcC
Q 036959 212 LRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 212 ~~~~l~~~~~L~~L~l~~n~l 232 (233)
+|..++++ .|+.|-+.||++
T Consensus 290 Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 290 LPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred CCcccccc-eeeehhhcCCch
Confidence 78889999 999999999986
No 12
>PLN03150 hypothetical protein; Provisional
Probab=99.62 E-value=5e-15 Score=127.33 Aligned_cols=150 Identities=30% Similarity=0.489 Sum_probs=124.9
Q ss_pred cchhhHHHHHHHHHhcCCCchhhcCCCCCCCCCC-----CccceeecCCC----ceEeEEEecCCcccccCCCCCCCCCC
Q 036959 6 NITTDQSALLMFKAHVIDPHSVLANNWSISYPLC-----NWVGVSCGARH----RRVRVLNLSNIGLQGTIPPYLGNLSF 76 (233)
Q Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----~~l~~L~l~~~~l~~~~~~~~~~l~~ 76 (233)
+...|..+|+.+++++..+.. .+ |. +++| .|.|+.|.... ..++.|+|+++.+.+.+|..+..+++
T Consensus 369 t~~~~~~aL~~~k~~~~~~~~--~~-W~--g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~ 443 (623)
T PLN03150 369 TLLEEVSALQTLKSSLGLPLR--FG-WN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH 443 (623)
T ss_pred cCchHHHHHHHHHHhcCCccc--CC-CC--CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence 455789999999999876532 34 85 3455 69999996321 25889999999999999999999999
Q ss_pred ccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCC-CCCcEEEec
Q 036959 77 LVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNI-SSLKWINLG 155 (233)
Q Consensus 77 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~ 155 (233)
|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++.+|..+... .++..+++.
T Consensus 444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEec
Confidence 9999999999998999999999999999999999998899999999999999999999998888877543 456778888
Q ss_pred CCcCc
Q 036959 156 FNSLS 160 (233)
Q Consensus 156 ~~~~~ 160 (233)
+|...
T Consensus 524 ~N~~l 528 (623)
T PLN03150 524 DNAGL 528 (623)
T ss_pred CCccc
Confidence 87644
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.59 E-value=3.5e-16 Score=124.65 Aligned_cols=184 Identities=23% Similarity=0.227 Sum_probs=124.3
Q ss_pred CceEeEEEecCCcccccCCCCCCCCC---CccEEEcccCccCC----CCchhhhcc-CCccEEEecCCcccCC----cch
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLS---FLVYLNFGQNNLYG----HLPNELGQL-HRLKSFGLEDNKFSGS----FPS 117 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~---~L~~L~l~~n~~~~----~~~~~l~~l-~~L~~L~l~~~~i~~~----~~~ 117 (233)
.++++.|+++++.+.+..+..+..+. +|++|++++|.+.. .+...+..+ ++|++|++++|.+++. .+.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 46889999998888654444444444 48999999888763 223345566 8889999999887732 233
Q ss_pred hhcCCCCCcEEEeeecccccc----CCccccCCCCCcEEEecCCcCcCcCchH---HhhcCCCCcEEEeecccccccCCC
Q 036959 118 WIGMLSKLQILSLRNNSFTGP----IPWSFYNISSLKWINLGFNSLSGTLPND---MCNRLPKLQEIYLHSNKLFGQIPS 190 (233)
Q Consensus 118 ~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~ 190 (233)
.+..+.+|++|++++|.+++. ++..+...++|+.|++++|.+.+..... ....+++|+.|++++|.+.+....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 455667899999988887742 2223445568999999988876322221 223567899999998887642222
Q ss_pred Ccc-----cccCCcEEEccCCcccC----ccchhccCcCCCCEEEecCCcCC
Q 036959 191 SLS-----HCIDLRRLWMSDNKFTG----RLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 191 ~~~-----~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
.+. ..+.|+.|++++|.+++ .+.+.+..+++|+.+++++|+++
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 221 23688899999998863 24456667788999999988874
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.56 E-value=9.3e-16 Score=122.23 Aligned_cols=184 Identities=21% Similarity=0.183 Sum_probs=128.4
Q ss_pred CceEeEEEecCCcccc------cCCCCCCCCCCccEEEcccCccCCCCchhhhccCC---ccEEEecCCcccCC----cc
Q 036959 50 HRRVRVLNLSNIGLQG------TIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHR---LKSFGLEDNKFSGS----FP 116 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~------~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~---L~~L~l~~~~i~~~----~~ 116 (233)
.+.++.++++++.+.+ .++..+..+++|+.|++++|.+....+..+..+.. |++|++++|.+... ..
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~ 129 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA 129 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence 3568888888877651 23345666889999999999887656666666655 99999999887621 22
Q ss_pred hhhcCC-CCCcEEEeeecccccc----CCccccCCCCCcEEEecCCcCcCcCchHHh---hcCCCCcEEEeeccccccc-
Q 036959 117 SWIGML-SKLQILSLRNNSFTGP----IPWSFYNISSLKWINLGFNSLSGTLPNDMC---NRLPKLQEIYLHSNKLFGQ- 187 (233)
Q Consensus 117 ~~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~- 187 (233)
..+..+ ++|++|++++|.+++. ++..+..+++|+.|++++|.+.+.....+. ...++|+.|++++|.+.+.
T Consensus 130 ~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 209 (319)
T cd00116 130 KGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG 209 (319)
T ss_pred HHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH
Confidence 234555 8899999999988732 233455667899999999988742222222 2456899999999987633
Q ss_pred ---CCCCcccccCCcEEEccCCcccCccchhcc-----CcCCCCEEEecCCcCC
Q 036959 188 ---IPSSLSHCIDLRRLWMSDNKFTGRLRENIG-----NLSKLRDLYTANNHLQ 233 (233)
Q Consensus 188 ---~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~n~l~ 233 (233)
+...+..+++|+.|++++|.+++.....+. ..+.|++|++++|.++
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 233456678899999999988864333332 2378999999999874
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.55 E-value=7.7e-14 Score=127.79 Aligned_cols=104 Identities=21% Similarity=0.228 Sum_probs=61.0
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
.+++.|++.++.+. .++..+..+++|+.++++++.....+|. +..+++|+.|++.+|.....+|..+..+++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 45666666666655 4555556667777777766554444443 556667777777766544456666666677777777
Q ss_pred eeccccccCCccccCCCCCcEEEecCC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFN 157 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~ 157 (233)
++|.....+|..+ ++++|+.|++++|
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc 714 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGC 714 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCC
Confidence 6654333444433 3444455444444
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=2.8e-16 Score=122.67 Aligned_cols=182 Identities=25% Similarity=0.284 Sum_probs=142.6
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEccc-CccCCC------------------------CchhhhccCCccEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQ-NNLYGH------------------------LPNELGQLHRLKSF 104 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~------------------------~~~~l~~l~~L~~L 104 (233)
.+++++|+|++|.|+.+.|..|.++..+..|.+.+ |.|+.. ....|..++++..|
T Consensus 90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lL 169 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLL 169 (498)
T ss_pred hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchh
Confidence 47899999999999989999999999887776555 666522 23456667888888
Q ss_pred EecCCcccCCcchhhcCCCCCcEEEeeeccccc-----------------------c-----------------------
Q 036959 105 GLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTG-----------------------P----------------------- 138 (233)
Q Consensus 105 ~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------------~----------------------- 138 (233)
.++.|.+.......|..+..++++.+..|.+.. .
T Consensus 170 slyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e 249 (498)
T KOG4237|consen 170 SLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE 249 (498)
T ss_pred cccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH
Confidence 888888773333366667777777766554110 0
Q ss_pred -C---------C------ccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEE
Q 036959 139 -I---------P------WSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLW 202 (233)
Q Consensus 139 -~---------~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 202 (233)
. | ..|..+++|+.+++++|.++ .+....|.....+++|+|.+|++...--..|..+..|++|+
T Consensus 250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLS 328 (498)
T ss_pred hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeee
Confidence 0 0 12456789999999999998 77777888999999999999998755455678889999999
Q ss_pred ccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 203 MSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 203 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
|.+|+|+...|.+|....+|..|.+-.|++
T Consensus 329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 329 LYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ecCCeeEEEecccccccceeeeeehccCcc
Confidence 999999999999999999999999999986
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.51 E-value=2.5e-13 Score=124.50 Aligned_cols=175 Identities=25% Similarity=0.303 Sum_probs=123.0
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|.+.++.+. .+|..| ...+|+.|++.++.+. .++..+..+++|+.|+++++......|. +..+++|++|++
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 45777777777665 666665 4688999999998876 5677778899999999998764435654 677899999999
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccccc--------------------CCC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQ--------------------IPS 190 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--------------------~~~ 190 (233)
++|.....+|..+..+++|+.|++.+|.....+|..+ .+++|+.|++++|...+. +|.
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPS 742 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccc
Confidence 9987666888889999999999999875443666543 455555555555432111 121
Q ss_pred Cc------------------------------ccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCc
Q 036959 191 SL------------------------------SHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNH 231 (233)
Q Consensus 191 ~~------------------------------~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 231 (233)
.+ ...++|+.|++++|.....+|..++++++|+.|++++|.
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 10 012356667777776555677777888888888887763
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=9.8e-14 Score=120.53 Aligned_cols=164 Identities=27% Similarity=0.375 Sum_probs=96.0
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
+.++.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. .+|++|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 46788888888887 4555443 47888888888776 4554332 35777777777766 4554442 35666676
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhh------------------cCCCCcEEEeecccccccCCCCc
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCN------------------RLPKLQEIYLHSNKLFGQIPSSL 192 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------------~~~~L~~L~l~~n~~~~~~~~~~ 192 (233)
++|.+. .+|..+. ++|+.|++++|.++ .+|..+.. ..++|+.|++++|.+++ +|..+
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l 344 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASL 344 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhh
Confidence 666665 3444332 35666666666655 33322110 11355666666666553 34333
Q ss_pred ccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 193 SHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 193 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
.++|+.|++++|.++ .+|..+. ++|+.|++++|+++
T Consensus 345 --~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 345 --PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred --cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 256777777777766 3444332 46777777777653
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.48 E-value=1.5e-13 Score=119.41 Aligned_cols=163 Identities=25% Similarity=0.374 Sum_probs=120.9
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
.+...|+++++.++ .+|..+. ++++.|++++|.+. .+|..+. ++|++|++++|.+. .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 45688999999887 5666553 57999999999998 5665543 58999999999998 5666443 57999999
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcc-----------------
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLS----------------- 193 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~----------------- 193 (233)
++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|.++. +|..+.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALP 320 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCC
Confidence 999998 6676653 58999999999998 6776543 589999999998874 332211
Q ss_pred --cccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 194 --HCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 194 --~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
..++|+.|++++|.++. +|..+. ++|+.|++++|+|+
T Consensus 321 ~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 321 ETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred ccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 12456677777777663 444432 68888888888764
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=2e-13 Score=118.32 Aligned_cols=167 Identities=28% Similarity=0.297 Sum_probs=98.0
Q ss_pred CceEeEEEecCCcccccCCCCCCCC-----------------CCccEEEcccCccCCCCchhhhccCCccEEEecCCccc
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNL-----------------SFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFS 112 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l-----------------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~ 112 (233)
.++|+.|++++|.++ .+|.....+ ..|+.|++++|.+. .+|. .+++|+.|++++|++.
T Consensus 241 p~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 241 PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA 315 (788)
T ss_pred CCCCcEEEecCCccC-cccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCccc
Confidence 477788888887776 333221111 23444555555554 2332 2345666666666655
Q ss_pred CCcchhh-------------cC----CCCCcEEEeeeccccccCCcccc-----------------CCCCCcEEEecCCc
Q 036959 113 GSFPSWI-------------GM----LSKLQILSLRNNSFTGPIPWSFY-----------------NISSLKWINLGFNS 158 (233)
Q Consensus 113 ~~~~~~~-------------~~----l~~L~~L~l~~~~~~~~~~~~~~-----------------~~~~L~~L~l~~~~ 158 (233)
. +|... .. ..+|++|++++|.+. .+|.... ...+|+.|++++|.
T Consensus 316 ~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~ 393 (788)
T PRK15387 316 S-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR 393 (788)
T ss_pred c-CCCCcccccccccccCccccccccccccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCc
Confidence 2 22210 00 125677777777766 3332111 11245666666666
Q ss_pred CcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 159 LSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 159 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+. .+|. ..++|+.|++++|.+.. +|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|+|+
T Consensus 394 Lt-~LP~----l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 394 LT-SLPV----LPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cc-CCCC----cccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 65 4443 23467777777777763 4532 245778888888887 67888999999999999999985
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.47 E-value=7.9e-16 Score=131.20 Aligned_cols=176 Identities=28% Similarity=0.392 Sum_probs=105.1
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccC----------------------CCCchhhhccCCccEEEecC
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLY----------------------GHLPNELGQLHRLKSFGLED 108 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~----------------------~~~~~~l~~l~~L~~L~l~~ 108 (233)
.+++.++++++.+. .+|+.+..+.+|+.++..+|.+. ..+|.....+++|++|++..
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 56677777777666 45566666666666666666542 02333444456666666666
Q ss_pred CcccCCcchhhc--------------------------CCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCc
Q 036959 109 NKFSGSFPSWIG--------------------------MLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGT 162 (233)
Q Consensus 109 ~~i~~~~~~~~~--------------------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 162 (233)
|++. .+|..+- .++.|+.|.+.+|.+++...+.+.+.++|++|+++.|++. .
T Consensus 320 N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~ 397 (1081)
T KOG0618|consen 320 NNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-S 397 (1081)
T ss_pred cccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-c
Confidence 6655 3333211 0123334444444444333344455667777777777776 6
Q ss_pred CchHHhhcCCCCcEEEeecccccc----------------------cCCCCcccccCCcEEEccCCcccCc-cchhccCc
Q 036959 163 LPNDMCNRLPKLQEIYLHSNKLFG----------------------QIPSSLSHCIDLRRLWMSDNKFTGR-LRENIGNL 219 (233)
Q Consensus 163 ~~~~~~~~~~~L~~L~l~~n~~~~----------------------~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~ 219 (233)
+|....++++.|++|+|++|+++. .+| .+..++.|+.+|++.|.++.. ++.....
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~- 475 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS- 475 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-
Confidence 777666677777777777776552 244 556667778888888877643 3333222
Q ss_pred CCCCEEEecCCc
Q 036959 220 SKLRDLYTANNH 231 (233)
Q Consensus 220 ~~L~~L~l~~n~ 231 (233)
++|++||++||.
T Consensus 476 p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 476 PNLKYLDLSGNT 487 (1081)
T ss_pred cccceeeccCCc
Confidence 788888888885
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=6.2e-15 Score=125.87 Aligned_cols=176 Identities=23% Similarity=0.266 Sum_probs=133.9
Q ss_pred CceEeEEEecCCcccccCCCCC--------------------------CCCCCccEEEcccCccCCCCchhhhccCCccE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYL--------------------------GNLSFLVYLNFGQNNLYGHLPNELGQLHRLKS 103 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~--------------------------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 103 (233)
.+.++.|++..|.+. ..|+.+ ..++.|+.|++.+|.+++...+.+..+++|+.
T Consensus 309 ~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 467888999888876 322211 01234566677778888777778899999999
Q ss_pred EEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccc
Q 036959 104 FGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNK 183 (233)
Q Consensus 104 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 183 (233)
|++++|++.......+.++..|++|++++|+++ .+|..+..++.|++|...+|.+. .+| .+. .++.|+.+|++.|.
T Consensus 388 LhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~-~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 388 LHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELA-QLPQLKVLDLSCNN 463 (1081)
T ss_pred eeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhh-hcCcceEEecccch
Confidence 999999998444456788899999999999998 78888999999999999999997 788 444 89999999999999
Q ss_pred ccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCC
Q 036959 184 LFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230 (233)
Q Consensus 184 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 230 (233)
+....-..-...++|++||++||.-....-+.|..++++...++.-|
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 87543333334489999999999754455566777777776666544
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.36 E-value=1.9e-14 Score=117.21 Aligned_cols=170 Identities=25% Similarity=0.364 Sum_probs=116.0
Q ss_pred eEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeec
Q 036959 54 RVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNN 133 (233)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 133 (233)
...+++.|.+. .+|..+..+..|+.+.+..|.+. .+|..+..+..|.+++++.|+++ .+|..+..++ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 44566666655 55555555566666666666665 56666777777777777777776 6666554433 677777777
Q ss_pred cccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccc
Q 036959 134 SFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLR 213 (233)
Q Consensus 134 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 213 (233)
+++ .+|..++....|..++++.|.+. .+|..+. .+.+|+.|.+..|++. .+|+.+. .-.|..||+++|+++ .+|
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~-~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iP 227 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLG-YLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLP 227 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhh-hHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecc
Confidence 776 56666666667777777777776 6666555 5677777777777765 4555555 345777888888887 667
Q ss_pred hhccCcCCCCEEEecCCcCC
Q 036959 214 ENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 214 ~~l~~~~~L~~L~l~~n~l~ 233 (233)
-.|.+++.|++|-|.+|+++
T Consensus 228 v~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhhheeeeeccCCCC
Confidence 77888888888888888764
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.34 E-value=1.3e-12 Score=107.23 Aligned_cols=173 Identities=31% Similarity=0.466 Sum_probs=132.6
Q ss_pred ceEeEEEecCCcccccCCCCCCCCC-CccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLS-FLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
..++.|++.++.+. .++....... +|+.|++++|.+. .+|..+..+++|+.|+++.|++. ..+......+.|+.|+
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence 46788888888887 5666566664 8899999998886 55556788889999999999888 5555444678888999
Q ss_pred eeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 130 LRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
+++|++. .+|........|+.+.+++|... ..+..+. ...++..+.+.+|++. ..+..++.++.+++|++++|.++
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh-hcccccccccCCceee-eccchhccccccceecccccccc
Confidence 9999888 56665545556888899888544 4444443 6778888888888875 33667788888999999999998
Q ss_pred CccchhccCcCCCCEEEecCCcC
Q 036959 210 GRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 210 ~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
...+ ++...+++.|++++|.+
T Consensus 269 ~i~~--~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 269 SISS--LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccc--ccccCccCEEeccCccc
Confidence 5433 88899999999999865
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.34 E-value=8.3e-12 Score=108.41 Aligned_cols=136 Identities=28% Similarity=0.397 Sum_probs=67.0
Q ss_pred eEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhc-------------
Q 036959 54 RVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIG------------- 120 (233)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~------------- 120 (233)
..|+++.+.+. .+|..+. .+|+.|++.+|.++ .+|. .+++|++|++++|+++ .+|..+.
T Consensus 204 ~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 204 AVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT 275 (788)
T ss_pred cEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCcccccceeeccCCchh
Confidence 34555555554 3444333 24555555555544 2332 2344555555555554 2332110
Q ss_pred ----CCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCccccc
Q 036959 121 ----MLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCI 196 (233)
Q Consensus 121 ----~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 196 (233)
....|+.|++++|.++ .+|. .+++|+.|++++|.+. .+|. ...+|+.|++++|.+.. +|.. ..
T Consensus 276 ~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L~~-LP~l---p~ 342 (788)
T PRK15387 276 HLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTS-LPTL---PS 342 (788)
T ss_pred hhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCC----CcccccccccccCcccc-cccc---cc
Confidence 1133445555555554 2332 1245666666666665 3432 12345556666666542 3321 24
Q ss_pred CCcEEEccCCcccC
Q 036959 197 DLRRLWMSDNKFTG 210 (233)
Q Consensus 197 ~L~~L~l~~n~~~~ 210 (233)
+|+.|++++|.++.
T Consensus 343 ~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 343 GLQELSVSDNQLAS 356 (788)
T ss_pred ccceEecCCCccCC
Confidence 68888888888874
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=2.4e-12 Score=92.64 Aligned_cols=122 Identities=30% Similarity=0.412 Sum_probs=29.9
Q ss_pred CccEEEecCCcccCCcchhhc-CCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEE
Q 036959 100 RLKSFGLEDNKFSGSFPSWIG-MLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIY 178 (233)
Q Consensus 100 ~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 178 (233)
.+++|++.++.|. ... .+. .+.+|+.|++++|.+. .+ ..+..++.|+.|++++|.++ .+...+...+++|++|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 3444444444444 121 122 2344555555555444 11 23334455555555555554 33332322345555555
Q ss_pred eecccccccC-CCCcccccCCcEEEccCCcccCcc---chhccCcCCCCEEE
Q 036959 179 LHSNKLFGQI-PSSLSHCIDLRRLWMSDNKFTGRL---RENIGNLSKLRDLY 226 (233)
Q Consensus 179 l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~ 226 (233)
+++|++.... -..++.+++|+.|++.+|.++... ...+..+|+|+.||
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 5555554211 123344555555555555554321 12334455555554
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.20 E-value=7.7e-11 Score=101.71 Aligned_cols=108 Identities=33% Similarity=0.554 Sum_probs=76.2
Q ss_pred ccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecC
Q 036959 77 LVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGF 156 (233)
Q Consensus 77 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 156 (233)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56677777777777777777777777777777777766776677777777777777777777777777777777777777
Q ss_pred CcCcCcCchHHhhcCCCCcEEEeecccc
Q 036959 157 NSLSGTLPNDMCNRLPKLQEIYLHSNKL 184 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 184 (233)
|.+.+.+|..+.....++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 7777777766553334556666666653
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=3.7e-11 Score=86.50 Aligned_cols=104 Identities=30% Similarity=0.375 Sum_probs=26.0
Q ss_pred eEeEEEecCCcccccCCCCCC-CCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhh-cCCCCCcEEE
Q 036959 52 RVRVLNLSNIGLQGTIPPYLG-NLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWI-GMLSKLQILS 129 (233)
Q Consensus 52 ~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~-~~l~~L~~L~ 129 (233)
++++|+++++.++ .+. .+. .+.+|+.|++++|.+.. ++ .+..++.|++|++++|.++. .+..+ ..+++|++|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEE
Confidence 3455666666554 222 222 34556666666666552 22 24455666666666666652 22222 2455666666
Q ss_pred eeecccccc-CCccccCCCCCcEEEecCCcCc
Q 036959 130 LRNNSFTGP-IPWSFYNISSLKWINLGFNSLS 160 (233)
Q Consensus 130 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~ 160 (233)
+++|++... ....+..+++|+.|++.+|.+.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666655421 1123344555555555555554
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.20 E-value=2.1e-11 Score=72.65 Aligned_cols=61 Identities=36% Similarity=0.454 Sum_probs=54.3
Q ss_pred CCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 172 PKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
|+|++|++++|.+....+..+..+++|++|++++|.+....+++|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5788999999999877777888999999999999999888888999999999999999986
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=4.2e-12 Score=98.07 Aligned_cols=181 Identities=17% Similarity=0.168 Sum_probs=106.9
Q ss_pred ceEeEEEecCCcccccCC----CCCCCCCCccEEEcccCccCCCCch-------------hhhccCCccEEEecCCcccC
Q 036959 51 RRVRVLNLSNIGLQGTIP----PYLGNLSFLVYLNFGQNNLYGHLPN-------------ELGQLHRLKSFGLEDNKFSG 113 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~-------------~l~~l~~L~~L~l~~~~i~~ 113 (233)
|+++.|+||.|.+...-+ ..++.+..|+.|.+.+|++...-.. ....-++|++++..+|.+..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 577777777776653222 2335566777777777776522111 12233567777777776652
Q ss_pred C----cchhhcCCCCCcEEEeeeccccccC----CccccCCCCCcEEEecCCcCcCc----CchHHhhcCCCCcEEEeec
Q 036959 114 S----FPSWIGMLSKLQILSLRNNSFTGPI----PWSFYNISSLKWINLGFNSLSGT----LPNDMCNRLPKLQEIYLHS 181 (233)
Q Consensus 114 ~----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~ 181 (233)
. ....|..++.|+.+.+..|.+...- ...+..+++|+.|++.+|.++.. +...+ ..+++|++|++++
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL-~s~~~L~El~l~d 250 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL-SSWPHLRELNLGD 250 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh-cccchheeecccc
Confidence 1 2234556677777777777765221 12456777777888777776521 11222 2566777777777
Q ss_pred ccccccCCCCc-----ccccCCcEEEccCCcccCc----cchhccCcCCCCEEEecCCcC
Q 036959 182 NKLFGQIPSSL-----SHCIDLRRLWMSDNKFTGR----LRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 182 n~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l 232 (233)
|.+.......+ ...+.|+.|.+.+|.++.. +..++...+.|+.|++++|.+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 77653322211 2356777777777777643 233444567777888887776
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.5e-12 Score=102.02 Aligned_cols=181 Identities=21% Similarity=0.242 Sum_probs=93.9
Q ss_pred CceEeEEEecCCcccccCC--CCCCCCCCccEEEcccCccCC--CCchhhhccCCccEEEecCCcccCCcchh-hcCCCC
Q 036959 50 HRRVRVLNLSNIGLQGTIP--PYLGNLSFLVYLNFGQNNLYG--HLPNELGQLHRLKSFGLEDNKFSGSFPSW-IGMLSK 124 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~--~~~~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~i~~~~~~~-~~~l~~ 124 (233)
..+|+.+.+.++... ..+ .....+++++.|+++.|-+.. .+......+|+|+.|.++.|.+..-..+. -..+.+
T Consensus 120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 356667777766554 222 345566777777777765542 23334456677777777777654111111 113466
Q ss_pred CcEEEeeecccccc-CCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccC-CCCcccccCCcEEE
Q 036959 125 LQILSLRNNSFTGP-IPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQI-PSSLSHCIDLRRLW 202 (233)
Q Consensus 125 L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~ 202 (233)
|+.|.++.|.++.. +...+..+|+|+.|.+..|......... ...+..|++|+|++|++.... -...+.++.|+.|.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 77777777766522 2223445566666666666321111111 113345666666666654221 13445566666666
Q ss_pred ccCCcccCc-cchh-----ccCcCCCCEEEecCCcC
Q 036959 203 MSDNKFTGR-LREN-----IGNLSKLRDLYTANNHL 232 (233)
Q Consensus 203 l~~n~~~~~-~~~~-----l~~~~~L~~L~l~~n~l 232 (233)
++.|++... .|++ ...+++|+.|++..|++
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 666665532 2222 23455666666666654
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.14 E-value=1.8e-12 Score=105.92 Aligned_cols=154 Identities=29% Similarity=0.469 Sum_probs=131.9
Q ss_pred EeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeee
Q 036959 53 VRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRN 132 (233)
Q Consensus 53 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 132 (233)
|+.+.+..|.+. .+|..+..+..|.+++++.|.+. .+|..+..++ |+.|.+++|++. .+|..+....+|..|+.+.
T Consensus 100 Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 100 LESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhh
Confidence 555667677776 78888999999999999999997 7777777776 999999999999 7888888889999999999
Q ss_pred ccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCcc
Q 036959 133 NSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRL 212 (233)
Q Consensus 133 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 212 (233)
|.+. .+|..++.+.+|+.+++.+|++. .+|.... . =.|..||++.|++. .+|-.|..+..|++|-|.+|.+. +.
T Consensus 176 nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SP 249 (722)
T KOG0532|consen 176 NEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-S-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SP 249 (722)
T ss_pred hhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-C-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CC
Confidence 9998 77888889999999999999998 7888776 3 35789999999998 67888999999999999999987 44
Q ss_pred chhc
Q 036959 213 RENI 216 (233)
Q Consensus 213 ~~~l 216 (233)
|..+
T Consensus 250 PAqI 253 (722)
T KOG0532|consen 250 PAQI 253 (722)
T ss_pred hHHH
Confidence 5433
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=4.3e-11 Score=98.30 Aligned_cols=171 Identities=35% Similarity=0.474 Sum_probs=133.0
Q ss_pred EEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccC-CccEEEecCCcccCCcchhhcCCCCCcEEEeeec
Q 036959 55 VLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLH-RLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNN 133 (233)
Q Consensus 55 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 133 (233)
.+....+.+. .....+..++.++.+++.+|.+. .++.....+. +|+.|++++|.+. ..|..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3555555543 22333455578999999999987 5555566664 8999999999998 66666788999999999999
Q ss_pred cccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccc
Q 036959 134 SFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLR 213 (233)
Q Consensus 134 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 213 (233)
.+. .+|......++|+.+++++|.+. .+|.... ....|+++.+++|.+. ..+..+..+..+..+.+.+|.+. ..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~-~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~ 248 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLP 248 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhh-hhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ecc
Confidence 998 56655557789999999999998 7877543 4566999999999643 45666788888889988989887 346
Q ss_pred hhccCcCCCCEEEecCCcCC
Q 036959 214 ENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 214 ~~l~~~~~L~~L~l~~n~l~ 233 (233)
..++.+++++.|++++|+++
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred chhccccccceecccccccc
Confidence 77889999999999999874
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=9.5e-12 Score=98.75 Aligned_cols=184 Identities=22% Similarity=0.172 Sum_probs=127.6
Q ss_pred CCCceEeEEEecCCccc--ccCCCCCCCCCCccEEEcccCccCCCCch-hhhccCCccEEEecCCcccCCc-chhhcCCC
Q 036959 48 ARHRRVRVLNLSNIGLQ--GTIPPYLGNLSFLVYLNFGQNNLYGHLPN-ELGQLHRLKSFGLEDNKFSGSF-PSWIGMLS 123 (233)
Q Consensus 48 ~~~~~l~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~~~i~~~~-~~~~~~l~ 123 (233)
..+++++.|++++|=+. ..+......+++|+.|+++.|.+...... .-..+++|+.|.++.|.++... ......+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 34589999999998664 23444456789999999999987522111 1225788999999999988332 23345689
Q ss_pred CCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCc-hHHhhcCCCCcEEEeeccccccc-CCCC-----ccccc
Q 036959 124 KLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLP-NDMCNRLPKLQEIYLHSNKLFGQ-IPSS-----LSHCI 196 (233)
Q Consensus 124 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~-~~~~-----~~~~~ 196 (233)
+|+.|++..|.....-.....-+..|+.|++++|++. .++ -.....++.|..|+++.+.+... .|+. ...++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 9999999998532222223334568999999999886 443 22334789999999999988643 2332 35678
Q ss_pred CCcEEEccCCcccCc-cchhccCcCCCCEEEecCCcC
Q 036959 197 DLRRLWMSDNKFTGR-LRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 197 ~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l 232 (233)
+|++|++..|.+.+- ..+.+..+++|+.|.+..|.+
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 999999999998532 223455667788888777765
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=3.3e-11 Score=91.91 Aligned_cols=127 Identities=24% Similarity=0.260 Sum_probs=72.6
Q ss_pred CccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEe
Q 036959 100 RLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYL 179 (233)
Q Consensus 100 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 179 (233)
.|+++|+++|.|+ .......-.|.++.|+++.|.+.. .+.++.+++|+.|++++|.++ .+. .+...+-+++.|.|
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~-Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECV-GWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhh-hhHhhhcCEeeeeh
Confidence 3555666666555 333444445666666666666542 123555566666666666554 332 22224556666666
Q ss_pred ecccccccCCCCcccccCCcEEEccCCcccCc-cchhccCcCCCCEEEecCCcCC
Q 036959 180 HSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGR-LRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 180 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
++|.+.. -+.+.++-+|..||+++|+|... -...++++|-|+.+.+.+|++.
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 6665532 12344556677778888877632 3356677777888888887763
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=1.2e-10 Score=90.10 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=96.8
Q ss_pred CCCCCccEEEcccCccCCCCc----hhhhccCCccEEEecCCcccCCcchh-------------hcCCCCCcEEEeeecc
Q 036959 72 GNLSFLVYLNFGQNNLYGHLP----NELGQLHRLKSFGLEDNKFSGSFPSW-------------IGMLSKLQILSLRNNS 134 (233)
Q Consensus 72 ~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~~~i~~~~~~~-------------~~~l~~L~~L~l~~~~ 134 (233)
..+++|+++++++|-+....+ ..+..+..|++|.+.+|.+....... ..+-+.|+++..++|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 345567777777776653322 22344566777777776654211111 2234567777777776
Q ss_pred ccccC----CccccCCCCCcEEEecCCcCcCcC---chHHhhcCCCCcEEEeeccccccc----CCCCcccccCCcEEEc
Q 036959 135 FTGPI----PWSFYNISSLKWINLGFNSLSGTL---PNDMCNRLPKLQEIYLHSNKLFGQ----IPSSLSHCIDLRRLWM 203 (233)
Q Consensus 135 ~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l 203 (233)
+.... ...++..+.|+.+.+..|.|...- ....+.++++|+.|||++|.++.. +...+..|++|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 65221 223455677777888777764211 112234778888888888877632 3345667788888888
Q ss_pred cCCcccCccchh----cc-CcCCCCEEEecCCcCC
Q 036959 204 SDNKFTGRLREN----IG-NLSKLRDLYTANNHLQ 233 (233)
Q Consensus 204 ~~n~~~~~~~~~----l~-~~~~L~~L~l~~n~l~ 233 (233)
++|.+......+ +. ..|+|+.|++.+|.|+
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 888887543332 22 3578888888888764
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=3.1e-11 Score=92.02 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=106.7
Q ss_pred CCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcE
Q 036959 72 GNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKW 151 (233)
Q Consensus 72 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 151 (233)
..++.|+.+|+++|.++ .+..+..-.|.++.|+++.|.+. ... .++.+++|++|++++|.++ ...+.-..+.+++.
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 34567899999999997 66777888899999999999997 333 3788999999999999887 44444456779999
Q ss_pred EEecCCcCcCcCchHHhhcCCCCcEEEeecccccccC-CCCcccccCCcEEEccCCcccCc
Q 036959 152 INLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQI-PSSLSHCIDLRRLWMSDNKFTGR 211 (233)
Q Consensus 152 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~ 211 (233)
|.+++|.+. .+ ..+. .+.+|..||+++|+|...- ...+++++-|+++.|.+|.+.+.
T Consensus 357 L~La~N~iE-~L-SGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 357 LKLAQNKIE-TL-SGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eehhhhhHh-hh-hhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999999986 33 3343 7889999999999986321 34678999999999999998854
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=1.2e-09 Score=65.01 Aligned_cols=59 Identities=31% Similarity=0.427 Sum_probs=35.9
Q ss_pred eEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCc
Q 036959 52 RVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNK 110 (233)
Q Consensus 52 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~ 110 (233)
+++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666664444556666666666666666654444556666666666666654
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.8e-11 Score=91.98 Aligned_cols=179 Identities=18% Similarity=0.137 Sum_probs=118.8
Q ss_pred ceEeEEEecCCccc-ccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCc-ccC-CcchhhcCCCCCcE
Q 036959 51 RRVRVLNLSNIGLQ-GTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNK-FSG-SFPSWIGMLSKLQI 127 (233)
Q Consensus 51 ~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-i~~-~~~~~~~~l~~L~~ 127 (233)
.+++.+|+++..++ ..+-..+..+++|+.|.+.++.+.+.+...+.+-.+|+.|+++++. ++. ..--.+.++..|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35777888877765 2223344667788888888888887777778888888888888863 221 11123567888899
Q ss_pred EEeeeccccccCCc-cccCC-CCCcEEEecCCcCc--CcCchHHhhcCCCCcEEEeeccccc-ccCCCCcccccCCcEEE
Q 036959 128 LSLRNNSFTGPIPW-SFYNI-SSLKWINLGFNSLS--GTLPNDMCNRLPKLQEIYLHSNKLF-GQIPSSLSHCIDLRRLW 202 (233)
Q Consensus 128 L~l~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~--~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~ 202 (233)
|++++|........ .+.+. .+|..|+++++... ......+..++|++.+|||++|..- ......+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99998877633221 12222 36777888887532 1222334558899999999987643 22334567789999999
Q ss_pred ccCCcccCccchh---ccCcCCCCEEEecCCc
Q 036959 203 MSDNKFTGRLREN---IGNLSKLRDLYTANNH 231 (233)
Q Consensus 203 l~~n~~~~~~~~~---l~~~~~L~~L~l~~n~ 231 (233)
++.|-. ++|.. +...|+|.+||+-|+.
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 988852 34543 4566889999987763
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=1.7e-09 Score=89.41 Aligned_cols=170 Identities=26% Similarity=0.327 Sum_probs=78.0
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
..++.|++..+.+. .+...+..+.+|++|++++|.|....+ +..++.|+.|++.+|.+. .. ..+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcch-hc-cCCccchhhhcccC
Confidence 44555555555554 222224445555555555555542221 334444555555555554 11 22333455555555
Q ss_pred eeccccccCC-ccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCccccc--CCcEEEccCCc
Q 036959 131 RNNSFTGPIP-WSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCI--DLRRLWMSDNK 207 (233)
Q Consensus 131 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~ 207 (233)
++|.+...-+ . ...+..++.+.+.+|.+. .+.. . .....+..+++.+|.+...-+ +.... +|+.+++++|.
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~-~i~~-~-~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIR-EIEG-L-DLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchh-cccc-h-HHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence 5555442211 1 233444555555555443 1110 0 012222222444444432211 11112 26777788887
Q ss_pred ccCccchhccCcCCCCEEEecCCcC
Q 036959 208 FTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 208 ~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
+.. .+..+..++.+..+++.+|++
T Consensus 244 i~~-~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 244 ISR-SPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred ccc-ccccccccccccccchhhccc
Confidence 763 235566677777777777765
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.69 E-value=1.7e-08 Score=89.68 Aligned_cols=107 Identities=27% Similarity=0.399 Sum_probs=80.6
Q ss_pred ceEeEEEecCCc--ccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEE
Q 036959 51 RRVRVLNLSNIG--LQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQIL 128 (233)
Q Consensus 51 ~~l~~L~l~~~~--l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 128 (233)
++++.|-+.++. +.......|..++.|++||+++|.-...+|..++.+-+||+|+++++.+. .+|..+..+..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 567787777775 44344445677888888888887666678888888888888888888887 788888888888888
Q ss_pred EeeeccccccCCccccCCCCCcEEEecCCc
Q 036959 129 SLRNNSFTGPIPWSFYNISSLKWINLGFNS 158 (233)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 158 (233)
++..+......|.....+++|++|.+....
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccc
Confidence 888776654556666667888888876654
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=9e-10 Score=83.96 Aligned_cols=155 Identities=20% Similarity=0.187 Sum_probs=109.0
Q ss_pred CccEEEcccCccC-CCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeecc-ccccCC-ccccCCCCCcEE
Q 036959 76 FLVYLNFGQNNLY-GHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNS-FTGPIP-WSFYNISSLKWI 152 (233)
Q Consensus 76 ~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~~~~~~L~~L 152 (233)
.++++|++...++ ..+-..+..+.+|+.|.+.++++.......++...+|+.|+++.+. ++.... -.+.+|+.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3778888887765 2344456778889999999988886666667778889999998764 443222 245788899999
Q ss_pred EecCCcCcCcCchHHhhc-CCCCcEEEeeccccc---ccCCCCcccccCCcEEEccCCc-ccCccchhccCcCCCCEEEe
Q 036959 153 NLGFNSLSGTLPNDMCNR-LPKLQEIYLHSNKLF---GQIPSSLSHCIDLRRLWMSDNK-FTGRLRENIGNLSKLRDLYT 227 (233)
Q Consensus 153 ~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~---~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l 227 (233)
+++++.........+..+ -+++..|+++|+.-. ..+......+++|..|||++|. ++.....+|..++-|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 999987653322222223 368889999887532 1112234678999999999984 55556667788899999999
Q ss_pred cCC
Q 036959 228 ANN 230 (233)
Q Consensus 228 ~~n 230 (233)
+.|
T Consensus 346 sRC 348 (419)
T KOG2120|consen 346 SRC 348 (419)
T ss_pred hhh
Confidence 876
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.56 E-value=8.8e-08 Score=72.43 Aligned_cols=180 Identities=22% Similarity=0.228 Sum_probs=90.3
Q ss_pred ceEeEEEecCCcccc----cCCCCCCCCCCccEEEcccCccC---CC-------CchhhhccCCccEEEecCCcccCCcc
Q 036959 51 RRVRVLNLSNIGLQG----TIPPYLGNLSFLVYLNFGQNNLY---GH-------LPNELGQLHRLKSFGLEDNKFSGSFP 116 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~~~---~~-------~~~~l~~l~~L~~L~l~~~~i~~~~~ 116 (233)
..+..+++++|.+.. .+...++.-++|+..++++-... .. +-+++-+||.|+..+++.|.+....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 456677777777652 23445555666766666653221 11 12344556777777777776654433
Q ss_pred h----hhcCCCCCcEEEeeeccccccCCcc-------------ccCCCCCcEEEecCCcCcCcCchHHh----hcCCCCc
Q 036959 117 S----WIGMLSKLQILSLRNNSFTGPIPWS-------------FYNISSLKWINLGFNSLSGTLPNDMC----NRLPKLQ 175 (233)
Q Consensus 117 ~----~~~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~ 175 (233)
. .+++...|.+|.+++|.+.-..-.. ..+-|.|+++.+.+|++. ..+.... ..-.+++
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCce
Confidence 3 2345566777777777654111000 123355666666666654 2222111 1113555
Q ss_pred EEEeecccccccCC-----CCcccccCCcEEEccCCcccCc----cchhccCcCCCCEEEecCCc
Q 036959 176 EIYLHSNKLFGQIP-----SSLSHCIDLRRLWMSDNKFTGR----LRENIGNLSKLRDLYTANNH 231 (233)
Q Consensus 176 ~L~l~~n~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~ 231 (233)
++-+..|.|..... ..+..+++|+.||+++|.++-. +..++...+.|++|.+.+|-
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 66665555431110 1123345566666666655521 22333344455555555553
No 44
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.56 E-value=8.6e-08 Score=52.46 Aligned_cols=39 Identities=41% Similarity=0.881 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHhcCC-CchhhcCCCCCC--CCCCCccceeec
Q 036959 8 TTDQSALLMFKAHVID-PHSVLANNWSIS--YPLCNWVGVSCG 47 (233)
Q Consensus 8 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~ 47 (233)
+.|.++|++||+++.+ +...+.+ |+.+ .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~-W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSS-WNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT---TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCccccc-CCCcCCCCCeeeccEEeC
Confidence 5799999999999995 6566776 9998 799999999994
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.55 E-value=4.2e-09 Score=87.04 Aligned_cols=172 Identities=26% Similarity=0.317 Sum_probs=101.3
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
..+..+.++.+.+. ..-..+..+++++.+++.+|.+.. +...+..+++|++|++++|.|... ..+..++.|+.|++
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL 147 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence 33444455555544 233345666777777777777763 222256677777788887777632 23455666777777
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 210 (233)
.+|.+... ..+..++.|+.+++++|.+. .+.......+.+++.+.+.+|.+... ..+..+..+..+++..|.++.
T Consensus 148 ~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 148 SGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred ccCcchhc--cCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccccee
Confidence 77777621 34444667777777777776 33331013567777777777776532 233334444455667776663
Q ss_pred ccchhccCcC--CCCEEEecCCcCC
Q 036959 211 RLRENIGNLS--KLRDLYTANNHLQ 233 (233)
Q Consensus 211 ~~~~~l~~~~--~L~~L~l~~n~l~ 233 (233)
.- .+..+. .|+.+++++|++.
T Consensus 223 ~~--~l~~~~~~~L~~l~l~~n~i~ 245 (414)
T KOG0531|consen 223 LE--GLNELVMLHLRELYLSGNRIS 245 (414)
T ss_pred cc--CcccchhHHHHHHhcccCccc
Confidence 21 122222 3788888888763
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=1.9e-09 Score=91.16 Aligned_cols=122 Identities=25% Similarity=0.280 Sum_probs=51.3
Q ss_pred EEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccc
Q 036959 104 FGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNK 183 (233)
Q Consensus 104 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 183 (233)
.+++.|.+. .+...+.-++.++.|+|++|+++. . ..+..++.|++|+++.|.++ .+|.--. .-..|..|.+++|-
T Consensus 169 a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~-~gc~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 169 ASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNCLR-HVPQLSM-VGCKLQLLNLRNNA 243 (1096)
T ss_pred hhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccchhc-cccccch-hhhhheeeeecccH
Confidence 334444443 333334444455555555555441 1 13444455555555555444 2222111 11124555555554
Q ss_pred ccccCCCCcccccCCcEEEccCCcccCc-cchhccCcCCCCEEEecCCcC
Q 036959 184 LFGQIPSSLSHCIDLRRLWMSDNKFTGR-LRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 184 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l 232 (233)
++.. ..+.++.+|+.||+++|-+.+. --.-+..+..|+.|.|.||++
T Consensus 244 l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 244 LTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 4321 1234445555555555544421 111233444455555555543
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.44 E-value=3.7e-07 Score=50.08 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=15.5
Q ss_pred CCcEEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 197 DLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 197 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
+|++|++++|.++ .+|..++++++|+.|++++|+|
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 3444555555544 2333344555555555555544
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=3.6e-08 Score=75.40 Aligned_cols=85 Identities=25% Similarity=0.259 Sum_probs=55.1
Q ss_pred ceEeEEEecCCccc--ccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCC-cchhhcCCCCCcE
Q 036959 51 RRVRVLNLSNIGLQ--GTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGS-FPSWIGMLSKLQI 127 (233)
Q Consensus 51 ~~l~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~ 127 (233)
.+++.+++.+|.++ ..+...+..++.|+.|++++|.+...+...-....+|+.|.+.+..+... ..+.+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 56778888888776 24455566778888888888877633322113456788888877766532 2334556777778
Q ss_pred EEeeeccc
Q 036959 128 LSLRNNSF 135 (233)
Q Consensus 128 L~l~~~~~ 135 (233)
++++.|.+
T Consensus 151 lHmS~N~~ 158 (418)
T KOG2982|consen 151 LHMSDNSL 158 (418)
T ss_pred hhhccchh
Confidence 87777743
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.40 E-value=9.2e-09 Score=87.11 Aligned_cols=125 Identities=29% Similarity=0.357 Sum_probs=94.1
Q ss_pred ccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCcc-ccCCCCCcEEEec
Q 036959 77 LVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWS-FYNISSLKWINLG 155 (233)
Q Consensus 77 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~ 155 (233)
|...++++|.+. .+..+++-++.++.|++++|+++ .. ..+..+++|++|||++|.+. .+|.. ...+ .|+.|++.
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v-~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KV-DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hh-HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 444566666665 55667888899999999999998 33 37788999999999999987 44443 2334 49999999
Q ss_pred CCcCcCcCchHHhhcCCCCcEEEeecccccccC-CCCcccccCCcEEEccCCccc
Q 036959 156 FNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQI-PSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~ 209 (233)
+|.++ .+ .++. ++.+|+.||++.|-+.+.- -..+..+..|+.|.|.||.+.
T Consensus 241 nN~l~-tL-~gie-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALT-TL-RGIE-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHH-hh-hhHH-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99987 44 3343 7889999999999876431 123455778899999999886
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.39 E-value=8.9e-07 Score=64.12 Aligned_cols=82 Identities=28% Similarity=0.281 Sum_probs=35.2
Q ss_pred ccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCch-HHhhcCCCCcEEEe
Q 036959 101 LKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPN-DMCNRLPKLQEIYL 179 (233)
Q Consensus 101 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l 179 (233)
...+|+++|.+. .+ ..|..++.|.+|.+.+|+++..-|..-.-+++|..|.+.+|++. .+.+ .-...+|+|+.|.+
T Consensus 44 ~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 44 FDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeee
Confidence 444555555443 11 22344455555555555555333333233344555555555443 1110 11113445555555
Q ss_pred eccccc
Q 036959 180 HSNKLF 185 (233)
Q Consensus 180 ~~n~~~ 185 (233)
-+|++.
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 555443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1.5e-07 Score=72.14 Aligned_cols=88 Identities=25% Similarity=0.298 Sum_probs=60.1
Q ss_pred ccCCccEEEecCCcccC--CcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCC
Q 036959 97 QLHRLKSFGLEDNKFSG--SFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL 174 (233)
Q Consensus 97 ~l~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 174 (233)
....++++|+.+|.++. .....+..+|.|++|+++.|.+...+-.......+|+++.+.++.+...........+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34567888888888762 2334456788888888888887743332224566888888888877655445555577788
Q ss_pred cEEEeecccc
Q 036959 175 QEIYLHSNKL 184 (233)
Q Consensus 175 ~~L~l~~n~~ 184 (233)
++|+++.|..
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 8888888743
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.33 E-value=1.5e-08 Score=68.80 Aligned_cols=112 Identities=19% Similarity=0.278 Sum_probs=65.8
Q ss_pred eEeEEEecCCccc--ccCCCCCCCCCCccEEEcccCccCCCCchhh-hccCCccEEEecCCcccCCcchhhcCCCCCcEE
Q 036959 52 RVRVLNLSNIGLQ--GTIPPYLGNLSFLVYLNFGQNNLYGHLPNEL-GQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQIL 128 (233)
Q Consensus 52 ~l~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 128 (233)
.+..++++.|.+. ...+..+.....|+.+++++|.+. ..|..| ..++.+..|++.+|++. ..|..++.++.|+.+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3455666666554 112223344455666677777776 334433 33456677777777776 566667777777777
Q ss_pred EeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHH
Q 036959 129 SLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDM 167 (233)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 167 (233)
+++.|.+. ..|+-+..+.++..|+..+|.+. .++.+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl 142 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL 142 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence 77777666 44444444666666666666665 555543
No 53
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.30 E-value=9.5e-07 Score=78.86 Aligned_cols=178 Identities=21% Similarity=0.257 Sum_probs=123.5
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCc--cCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEE
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNN--LYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQIL 128 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~--~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 128 (233)
..++.+.+-++.+. .++... .++.|+.|-+..|. +.......|..++.|+.||+++|.-.+.+|+.+..+.+|++|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 45667777777665 333322 33468888888886 544455568889999999999887666899999999999999
Q ss_pred EeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccc--ccCCCCcccccCCcEEEccCC
Q 036959 129 SLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLF--GQIPSSLSHCIDLRRLWMSDN 206 (233)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~~~~~~~L~~L~l~~n 206 (233)
+++++.+. .+|.++.+++.|.+|++..+.....+ ..+...+++|++|.+...... ...-..+..+.+|+.+.....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS 678 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence 99999998 89999999999999999988765344 444446899999998765421 111222333444444333222
Q ss_pred cc-------------------------cCccchhccCcCCCCEEEecCCcC
Q 036959 207 KF-------------------------TGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 207 ~~-------------------------~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
.. ....+..+..+.+|+.|.+.++.+
T Consensus 679 s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 679 SVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred hhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCC
Confidence 11 012344566778889998888765
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=5.4e-08 Score=66.15 Aligned_cols=110 Identities=22% Similarity=0.299 Sum_probs=80.3
Q ss_pred CccEEEecCCcccCCcchh---hcCCCCCcEEEeeeccccccCCccc-cCCCCCcEEEecCCcCcCcCchHHhhcCCCCc
Q 036959 100 RLKSFGLEDNKFSGSFPSW---IGMLSKLQILSLRNNSFTGPIPWSF-YNISSLKWINLGFNSLSGTLPNDMCNRLPKLQ 175 (233)
Q Consensus 100 ~L~~L~l~~~~i~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 175 (233)
.+..++++.|++. ..++. +.....|+..++++|.+. ..|..| ..++.++.+++++|.++ .+|..+. .++.|+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~A-am~aLr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELA-AMPALR 103 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHh-hhHHhh
Confidence 3566788888776 44444 344567777889999888 455555 44567888999999987 7888754 889999
Q ss_pred EEEeecccccccCCCCcccccCCcEEEccCCcccCccch
Q 036959 176 EIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRE 214 (233)
Q Consensus 176 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 214 (233)
.|+++.|++. ..|..+..+.++..|+..+|.......+
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 9999999886 4566666788888888888877644333
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.15 E-value=8.8e-07 Score=77.12 Aligned_cols=133 Identities=16% Similarity=0.182 Sum_probs=68.9
Q ss_pred CccEEEcccCccCCCC-chh-hhccCCccEEEecCCcccC-CcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEE
Q 036959 76 FLVYLNFGQNNLYGHL-PNE-LGQLHRLKSFGLEDNKFSG-SFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWI 152 (233)
Q Consensus 76 ~L~~L~l~~n~~~~~~-~~~-l~~l~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 152 (233)
+|+.|++++....... +.. -..+|+|+.|.+.+-.+.. .......++++|..||++++.++.. .++.++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 4566666654332111 111 2335667777766654431 1122334566777777777666522 455666667666
Q ss_pred EecCCcCcC-cCchHHhhcCCCCcEEEeecccccccC--C----CCcccccCCcEEEccCCcccCc
Q 036959 153 NLGFNSLSG-TLPNDMCNRLPKLQEIYLHSNKLFGQI--P----SSLSHCIDLRRLWMSDNKFTGR 211 (233)
Q Consensus 153 ~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~--~----~~~~~~~~L~~L~l~~n~~~~~ 211 (233)
.+.+=.+.. ..-.++| .+++|+.||+|........ . +.-..+|+|+.||.+++.+...
T Consensus 201 ~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 666555442 1123455 6677777777654432110 0 1112356677777776666544
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.10 E-value=3.2e-06 Score=64.22 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=85.3
Q ss_pred CCCCCCCccEEEcccCccCCCCchh----hhccCCccEEEecCCcccCCcchh-------------hcCCCCCcEEEeee
Q 036959 70 YLGNLSFLVYLNFGQNNLYGHLPNE----LGQLHRLKSFGLEDNKFSGSFPSW-------------IGMLSKLQILSLRN 132 (233)
Q Consensus 70 ~~~~l~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~L~l~~~~i~~~~~~~-------------~~~l~~L~~L~l~~ 132 (233)
.+.+|+.|+.+++++|.+....|.. +.....|.+|.+.+|.+....... ..+-|.|+++...+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 4456777777777777766544433 344566777777777654211111 12346677777777
Q ss_pred ccccccCCc-----cccCCCCCcEEEecCCcCcCcC-c----hHHhhcCCCCcEEEeeccccccc----CCCCcccccCC
Q 036959 133 NSFTGPIPW-----SFYNISSLKWINLGFNSLSGTL-P----NDMCNRLPKLQEIYLHSNKLFGQ----IPSSLSHCIDL 198 (233)
Q Consensus 133 ~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~-~----~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L 198 (233)
|++.. .+. .+..-.+|+.+.+..|.|+..- . ..++ -+.+|+.|++++|.++.. +...+..|+.|
T Consensus 167 NRlen-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 167 NRLEN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred chhcc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 76642 111 1222245667777777665110 0 0111 345677777777766522 22344556667
Q ss_pred cEEEccCCcccCccch----hcc--CcCCCCEEEecCCc
Q 036959 199 RRLWMSDNKFTGRLRE----NIG--NLSKLRDLYTANNH 231 (233)
Q Consensus 199 ~~L~l~~n~~~~~~~~----~l~--~~~~L~~L~l~~n~ 231 (233)
++|.+.+|-++....+ .|. ..|+|..|...+|.
T Consensus 245 rEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 245 RELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred hhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 7777777766543222 221 23555555555553
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.05 E-value=1.6e-05 Score=54.52 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=46.6
Q ss_pred hhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCC
Q 036959 95 LGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL 174 (233)
Q Consensus 95 l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 174 (233)
|..+.+|+.+.+.. .+.......|..+.+|+.+.+..+ +.......+.++++++.+.+.. .+. .++...+..++++
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccc
Confidence 44445555555543 233233344555555666665543 3323333455555666666644 332 3444445456666
Q ss_pred cEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCC
Q 036959 175 QEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLR 223 (233)
Q Consensus 175 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 223 (233)
+.+.+..+ +.......+..+ .++.+.+.. .+......+|.++++|+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 66666544 333334455555 666666654 33334556666666654
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=4.1e-06 Score=45.87 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=22.1
Q ss_pred CCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 172 PKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
++|++|++++|+++. +|..++.+++|+.|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 356666666666663 3444666667777777777665
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=1.2e-05 Score=58.35 Aligned_cols=127 Identities=21% Similarity=0.247 Sum_probs=83.6
Q ss_pred eEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeec
Q 036959 54 RVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNN 133 (233)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 133 (233)
+++++++..+. .....-.-..+...+|+++|.+... ..|..++.|.+|.+.+|.|+...|..-..+++|..|.+.+|
T Consensus 22 ~e~~LR~lkip-~ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 22 RELDLRGLKIP-VIENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccc-chhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 45566666554 2222112345667788998887532 23668888999999999998666665555688999999998
Q ss_pred cccccC-CccccCCCCCcEEEecCCcCcCcC--chHHhhcCCCCcEEEeeccc
Q 036959 134 SFTGPI-PWSFYNISSLKWINLGFNSLSGTL--PNDMCNRLPKLQEIYLHSNK 183 (233)
Q Consensus 134 ~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~n~ 183 (233)
.+.... ...+..|+.|+.|.+-+|.+...- ...+.-.+|+++.||++.-.
T Consensus 99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 887221 234567889999999888875211 01112267888888887654
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=9.4e-05 Score=60.27 Aligned_cols=75 Identities=15% Similarity=0.167 Sum_probs=50.1
Q ss_pred CCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeec-cccccCCccccCCCCC
Q 036959 71 LGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNN-SFTGPIPWSFYNISSL 149 (233)
Q Consensus 71 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L 149 (233)
+..+.+++.|++++|.+. .+| .-.++|++|.++++.-...+|+.+ ..+|++|.+++| .+. .+|. +|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------cc
Confidence 344688999999999776 455 233469999998864433666544 368999999988 443 4443 45
Q ss_pred cEEEecCCc
Q 036959 150 KWINLGFNS 158 (233)
Q Consensus 150 ~~L~l~~~~ 158 (233)
+.|.+..+.
T Consensus 115 e~L~L~~n~ 123 (426)
T PRK15386 115 RSLEIKGSA 123 (426)
T ss_pred ceEEeCCCC
Confidence 566665544
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=8.6e-06 Score=71.11 Aligned_cols=81 Identities=16% Similarity=0.237 Sum_probs=33.4
Q ss_pred ceEeEEEecCCccc-ccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccC-CcchhhcCCCCCcEE
Q 036959 51 RRVRVLNLSNIGLQ-GTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSG-SFPSWIGMLSKLQIL 128 (233)
Q Consensus 51 ~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L 128 (233)
|.++.|.+++-.+. +........+++|..||+++.++... ..++.+++|+.|.+++-.+.. ..-..+-.+++|+.|
T Consensus 148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vL 225 (699)
T KOG3665|consen 148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVL 225 (699)
T ss_pred cccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCee
Confidence 44555555544332 11222233444555555555444422 234445555555444433331 000122334555555
Q ss_pred Eeeec
Q 036959 129 SLRNN 133 (233)
Q Consensus 129 ~l~~~ 133 (233)
|+++.
T Consensus 226 DIS~~ 230 (699)
T KOG3665|consen 226 DISRD 230 (699)
T ss_pred ecccc
Confidence 55443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.80 E-value=9.6e-05 Score=60.20 Aligned_cols=72 Identities=17% Similarity=0.302 Sum_probs=48.6
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCC-cccCCcchhhcCCCCCcEEE
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDN-KFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~-~i~~~~~~~~~~l~~L~~L~ 129 (233)
++++.|++++|.++ .+|. + -.+|+.|.++++.-...+|..+ .++|+.|.+.+| .+. .+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccceEE
Confidence 67889999999876 5552 2 2469999998865444566544 357999999988 444 4443 466777
Q ss_pred eeeccc
Q 036959 130 LRNNSF 135 (233)
Q Consensus 130 l~~~~~ 135 (233)
+..+..
T Consensus 119 L~~n~~ 124 (426)
T PRK15386 119 IKGSAT 124 (426)
T ss_pred eCCCCC
Confidence 765443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.75 E-value=9.5e-05 Score=50.68 Aligned_cols=122 Identities=19% Similarity=0.219 Sum_probs=47.1
Q ss_pred CCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCC
Q 036959 70 YLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSL 149 (233)
Q Consensus 70 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 149 (233)
.|..+.+|+.+.+.. .+.......|..+.+|+.+.+.++ +.......|..++.++.+.+.. .+.......+..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 345555666666553 333333344555656666666553 4423334455555666666644 2222223345556666
Q ss_pred cEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCC
Q 036959 150 KWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDL 198 (233)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 198 (233)
+.+.+..+ +. .++...+... +++.+.+.. .+.......|..+++|
T Consensus 84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666543 33 4444444444 666666554 2222333344444433
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00023 Score=53.77 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=34.1
Q ss_pred ccCCccEEEecCC--cccCCcchhhcCCCCCcEEEeeeccccccCCcc---ccCCCCCcEEEecCCcCcC--cCchHHhh
Q 036959 97 QLHRLKSFGLEDN--KFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWS---FYNISSLKWINLGFNSLSG--TLPNDMCN 169 (233)
Q Consensus 97 ~l~~L~~L~l~~~--~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~--~~~~~~~~ 169 (233)
.+++|++|.++.| .+...++.....+++|+++++++|++.. +.. +..+.+|..|++.+|..+. .-...+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 4445555555555 3332222222333555555555555541 112 2233344455555544331 11123333
Q ss_pred cCCCCcEEE
Q 036959 170 RLPKLQEIY 178 (233)
Q Consensus 170 ~~~~L~~L~ 178 (233)
-+++|++|+
T Consensus 141 ll~~L~~LD 149 (260)
T KOG2739|consen 141 LLPSLKYLD 149 (260)
T ss_pred Hhhhhcccc
Confidence 455555544
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.11 E-value=0.00025 Score=53.66 Aligned_cols=105 Identities=24% Similarity=0.206 Sum_probs=66.3
Q ss_pred cCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCC--cCcCcCchHHhhcCCCCcEEEeeccccccc-CCCCccccc
Q 036959 120 GMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFN--SLSGTLPNDMCNRLPKLQEIYLHSNKLFGQ-IPSSLSHCI 196 (233)
Q Consensus 120 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~ 196 (233)
..+..|+.+.+.+..++.. ..+..+++|+.|.++.| ++.+.++...- .+|+|+++++++|++... --.-+..+.
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhh-hCCceeEEeecCCccccccccchhhhhc
Confidence 3445666666665555421 24446778999999999 55544443333 569999999999998631 011245567
Q ss_pred CCcEEEccCCcccCccc---hhccCcCCCCEEEe
Q 036959 197 DLRRLWMSDNKFTGRLR---ENIGNLSKLRDLYT 227 (233)
Q Consensus 197 ~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l 227 (233)
+|..|++.+|..+.... ..|.-+++|+.||-
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 78889999888775211 34445677777653
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=3.6e-05 Score=58.81 Aligned_cols=100 Identities=23% Similarity=0.328 Sum_probs=70.2
Q ss_pred CCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccC-CCCcccccCCcE
Q 036959 122 LSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQI-PSSLSHCIDLRR 200 (233)
Q Consensus 122 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~ 200 (233)
+.+.++|++.+|++.+. .....++.|++|.++-|.|+ .+.. +.++++|++|+|..|.|.... -..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 45677888888887632 24456788999999999987 5543 237889999999988876321 123567888999
Q ss_pred EEccCCcccCccc-----hhccCcCCCCEEE
Q 036959 201 LWMSDNKFTGRLR-----ENIGNLSKLRDLY 226 (233)
Q Consensus 201 L~l~~n~~~~~~~-----~~l~~~~~L~~L~ 226 (233)
|.|..|.-.+..+ ..+.-+|+|++||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9998887665433 2455677777775
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=1.5e-05 Score=60.86 Aligned_cols=102 Identities=21% Similarity=0.229 Sum_probs=73.0
Q ss_pred ccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcE
Q 036959 97 QLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQE 176 (233)
Q Consensus 97 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 176 (233)
.+.+.++|++.+|.++.. +....++.|+.|.|+-|+++.. ..+..|++|++|.+..|.|.+-........+|+|+.
T Consensus 17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 356678888888888733 3445688899999999988733 356678899999999888873323344557889999
Q ss_pred EEeecccccccCCC-----CcccccCCcEEE
Q 036959 177 IYLHSNKLFGQIPS-----SLSHCIDLRRLW 202 (233)
Q Consensus 177 L~l~~n~~~~~~~~-----~~~~~~~L~~L~ 202 (233)
|-|..|+..+..+. .+..+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 98888886654432 234567777776
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.33 E-value=0.0025 Score=29.07 Aligned_cols=20 Identities=30% Similarity=0.395 Sum_probs=11.6
Q ss_pred CcEEEccCCcccCccchhccC
Q 036959 198 LRRLWMSDNKFTGRLRENIGN 218 (233)
Q Consensus 198 L~~L~l~~n~~~~~~~~~l~~ 218 (233)
|++|++++|.++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 566666666666 45544443
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.24 E-value=0.016 Score=24.50 Aligned_cols=14 Identities=43% Similarity=0.551 Sum_probs=6.9
Q ss_pred CCCCEEEecCCcCC
Q 036959 220 SKLRDLYTANNHLQ 233 (233)
Q Consensus 220 ~~L~~L~l~~n~l~ 233 (233)
++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 35666777776653
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.18 E-value=0.0043 Score=52.26 Aligned_cols=130 Identities=20% Similarity=0.176 Sum_probs=59.5
Q ss_pred cCCccEEEecCCcccCC--cchhhcCCCCCcEEEeeec-cccccCC----ccccCCCCCcEEEecCCc-CcCcCchHHhh
Q 036959 98 LHRLKSFGLEDNKFSGS--FPSWIGMLSKLQILSLRNN-SFTGPIP----WSFYNISSLKWINLGFNS-LSGTLPNDMCN 169 (233)
Q Consensus 98 l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~~----~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~ 169 (233)
++.|+.+.+.++.-... .......++.|++|+++++ ......+ .....+++|+.++++.+. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566666655422211 2233345566666666652 1110111 122334566666666665 44232233333
Q ss_pred cCCCCcEEEeeccc-cccc-CCCCcccccCCcEEEccCCccc-Cc-cchhccCcCCCCEEEe
Q 036959 170 RLPKLQEIYLHSNK-LFGQ-IPSSLSHCIDLRRLWMSDNKFT-GR-LRENIGNLSKLRDLYT 227 (233)
Q Consensus 170 ~~~~L~~L~l~~n~-~~~~-~~~~~~~~~~L~~L~l~~n~~~-~~-~~~~l~~~~~L~~L~l 227 (233)
.+++|+.|.+.++. ++.. +......++.|++|++++|... +. +.....++++++.+.+
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 45666666655555 3321 1122334566677776666432 11 2222334555554443
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.65 E-value=5.5e-05 Score=63.38 Aligned_cols=181 Identities=24% Similarity=0.207 Sum_probs=113.0
Q ss_pred EeEEEecCCcccc----cCCCCCCCCCCccEEEcccCccCCCCc----hhhhcc-CCccEEEecCCcccCCc----chhh
Q 036959 53 VRVLNLSNIGLQG----TIPPYLGNLSFLVYLNFGQNNLYGHLP----NELGQL-HRLKSFGLEDNKFSGSF----PSWI 119 (233)
Q Consensus 53 l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~l-~~L~~L~l~~~~i~~~~----~~~~ 119 (233)
+..+.+.+|.+.. .+...+.....|..|++++|.+..... ..+... +.+++|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677788887763 234455677788888999888763221 122222 45677777777776332 2334
Q ss_pred cCCCCCcEEEeeeccccc----cCCcccc----CCCCCcEEEecCCcCcCcCch---HHhhcCCC-CcEEEeeccccccc
Q 036959 120 GMLSKLQILSLRNNSFTG----PIPWSFY----NISSLKWINLGFNSLSGTLPN---DMCNRLPK-LQEIYLHSNKLFGQ 187 (233)
Q Consensus 120 ~~l~~L~~L~l~~~~~~~----~~~~~~~----~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~-L~~L~l~~n~~~~~ 187 (233)
.....++.+++..|.+.. .++..+. ...+++.|.+.++.++..... ......+. +.++++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 446788888888887641 1222333 355788888888877522111 11223344 66688888876533
Q ss_pred ----CCCCcccc-cCCcEEEccCCcccCc----cchhccCcCCCCEEEecCCcCC
Q 036959 188 ----IPSSLSHC-IDLRRLWMSDNKFTGR----LRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 188 ----~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
....+..+ ..++.++++.|.+++. +.+.+..++.++.+.+++|++.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 12233444 6778999999998854 5566677788999999988763
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.24 E-value=0.028 Score=47.32 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=16.4
Q ss_pred CCCCcEEEecCCc-CcCcCchHHhhcCCCCcEEEeeccc
Q 036959 146 ISSLKWINLGFNS-LSGTLPNDMCNRLPKLQEIYLHSNK 183 (233)
Q Consensus 146 ~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~ 183 (233)
+++|+.|.+.++. +++.--..+...+++|++|+++++.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4455555544443 3322222333344455555555443
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.77 E-value=0.016 Score=26.82 Aligned_cols=20 Identities=25% Similarity=0.235 Sum_probs=10.5
Q ss_pred cCCcEEEccCCcccCccchh
Q 036959 196 IDLRRLWMSDNKFTGRLREN 215 (233)
Q Consensus 196 ~~L~~L~l~~n~~~~~~~~~ 215 (233)
++|++|++++|.+++....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45666777776666544433
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=0.02 Score=42.05 Aligned_cols=83 Identities=18% Similarity=0.155 Sum_probs=40.0
Q ss_pred CCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCc-hHHhhcCCCCcEEEeeccc-ccccCCCCcccccCCcE
Q 036959 123 SKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLP-NDMCNRLPKLQEIYLHSNK-LFGQIPSSLSHCIDLRR 200 (233)
Q Consensus 123 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~ 200 (233)
..++.++-+++.+..+.-..+..++.++.|.+.++.-.+..- ..+....++|+.|++++|. |+...-..+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 345555555555554433445555566666666554322111 1122234566666666654 33332334445555555
Q ss_pred EEccC
Q 036959 201 LWMSD 205 (233)
Q Consensus 201 L~l~~ 205 (233)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55443
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.77 E-value=0.0073 Score=44.26 Aligned_cols=84 Identities=14% Similarity=0.047 Sum_probs=55.9
Q ss_pred CCccEEEecCCcccCCcchhhcCCCCCcEEEeeecccccc-CCccc-cCCCCCcEEEecCCc-CcCcCchHHhhcCCCCc
Q 036959 99 HRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGP-IPWSF-YNISSLKWINLGFNS-LSGTLPNDMCNRLPKLQ 175 (233)
Q Consensus 99 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~ 175 (233)
..++.++-+++.|....-..+..+..++.|.+.+|..-+. -...+ .-.++|+.|++++|. |+ ..-.....++++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhH
Confidence 3478888888888766666777888888888888764321 00111 134689999999874 55 33333333788888
Q ss_pred EEEeeccc
Q 036959 176 EIYLHSNK 183 (233)
Q Consensus 176 ~L~l~~n~ 183 (233)
.|++.+-+
T Consensus 180 ~L~l~~l~ 187 (221)
T KOG3864|consen 180 RLHLYDLP 187 (221)
T ss_pred HHHhcCch
Confidence 88877644
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.56 E-value=0.12 Score=24.27 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=12.3
Q ss_pred cCCcEEEccCCcccCccchhc
Q 036959 196 IDLRRLWMSDNKFTGRLRENI 216 (233)
Q Consensus 196 ~~L~~L~l~~n~~~~~~~~~l 216 (233)
++|+.|+|++|.+....+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456677777777664443333
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.56 E-value=0.12 Score=24.27 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=12.3
Q ss_pred cCCcEEEccCCcccCccchhc
Q 036959 196 IDLRRLWMSDNKFTGRLRENI 216 (233)
Q Consensus 196 ~~L~~L~l~~n~~~~~~~~~l 216 (233)
++|+.|+|++|.+....+..|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456677777777664443333
No 78
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=91.70 E-value=0.079 Score=43.28 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=51.0
Q ss_pred CCCCcEEEeeeccc-cccCCc-cccCCCCCcEEEecCCcCcCcC-chHHhhcCCCCcEEEeeccccc-cc----CCCCcc
Q 036959 122 LSKLQILSLRNNSF-TGPIPW-SFYNISSLKWINLGFNSLSGTL-PNDMCNRLPKLQEIYLHSNKLF-GQ----IPSSLS 193 (233)
Q Consensus 122 l~~L~~L~l~~~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~-~~----~~~~~~ 193 (233)
.++|+.+.+..++. +..--. .-+++++|+.+++..+...... -.....+++.++.+.++.|... +. +.....
T Consensus 319 ~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c 398 (483)
T KOG4341|consen 319 CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSC 398 (483)
T ss_pred CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccc
Confidence 45666666655542 211001 1134455666665554321000 1122235566666666655422 11 111223
Q ss_pred cccCCcEEEccCCccc-CccchhccCcCCCCEEEecCC
Q 036959 194 HCIDLRRLWMSDNKFT-GRLRENIGNLSKLRDLYTANN 230 (233)
Q Consensus 194 ~~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n 230 (233)
....|+.+-|+++... +..-+.+..+++|+.+++-++
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 3455666666666433 334455566677777666554
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.78 E-value=0.00099 Score=56.02 Aligned_cols=161 Identities=22% Similarity=0.181 Sum_probs=102.2
Q ss_pred ceEeEEEecCCccccc----CCCCCCCC-CCccEEEcccCccCC----CCchhhhccCCccEEEecCCcccC----Ccch
Q 036959 51 RRVRVLNLSNIGLQGT----IPPYLGNL-SFLVYLNFGQNNLYG----HLPNELGQLHRLKSFGLEDNKFSG----SFPS 117 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~----~~~~~~~l-~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~i~~----~~~~ 117 (233)
..+..|+++++++.+. +...+... ..+++|++..|.+.. .+...+.....++.++++.|.+.. ..+.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 6678899999988632 22233332 456777777777663 244556667888999999887741 1222
Q ss_pred hhc----CCCCCcEEEeeeccccccC----CccccCCCC-CcEEEecCCcCcCcCchHHhh---cC-CCCcEEEeecccc
Q 036959 118 WIG----MLSKLQILSLRNNSFTGPI----PWSFYNISS-LKWINLGFNSLSGTLPNDMCN---RL-PKLQEIYLHSNKL 184 (233)
Q Consensus 118 ~~~----~l~~L~~L~l~~~~~~~~~----~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~---~~-~~L~~L~l~~n~~ 184 (233)
.+. ...++++|.+.+|.++... ...+...+. +..+++..|.+-+........ .. +.++.++++.|.+
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi 274 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSI 274 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCc
Confidence 233 4678899999988876321 112334444 566888888875332222222 23 4668999999988
Q ss_pred cccCC----CCcccccCCcEEEccCCcccCc
Q 036959 185 FGQIP----SSLSHCIDLRRLWMSDNKFTGR 211 (233)
Q Consensus 185 ~~~~~----~~~~~~~~L~~L~l~~n~~~~~ 211 (233)
..... ..+..+..++++.+..|.+.+.
T Consensus 275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 275 TEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred cccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 75433 3455667899999999988753
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.71 E-value=0.3 Score=23.18 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=6.9
Q ss_pred CCCCEEEecCCcC
Q 036959 220 SKLRDLYTANNHL 232 (233)
Q Consensus 220 ~~L~~L~l~~n~l 232 (233)
++|+.|++++|+|
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 3455555555554
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.00 E-value=0.35 Score=23.27 Aligned_cols=13 Identities=46% Similarity=0.644 Sum_probs=8.3
Q ss_pred CCCCEEEecCCcC
Q 036959 220 SKLRDLYTANNHL 232 (233)
Q Consensus 220 ~~L~~L~l~~n~l 232 (233)
++|+.|||++|.|
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4566666666665
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.49 E-value=0.0083 Score=45.12 Aligned_cols=87 Identities=20% Similarity=0.241 Sum_probs=51.9
Q ss_pred hcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCC
Q 036959 119 IGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDL 198 (233)
Q Consensus 119 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 198 (233)
+......+.||++.|+.. .+-..+.-++.+..++++.|.+. ..|.+.. ....++.+++..|... ..|.+++..+++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~-q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAK-QQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHH-HHHHHHHHHhhccchh-hCCccccccCCc
Confidence 444566667777766654 22233444455666777776665 5565554 4445555555555544 556677777777
Q ss_pred cEEEccCCccc
Q 036959 199 RRLWMSDNKFT 209 (233)
Q Consensus 199 ~~L~l~~n~~~ 209 (233)
+++++.++.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 77777777655
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.46 E-value=0.011 Score=44.46 Aligned_cols=86 Identities=23% Similarity=0.252 Sum_probs=67.6
Q ss_pred CCCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcE
Q 036959 48 ARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQI 127 (233)
Q Consensus 48 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 127 (233)
..+.+++.||++.+.+. .....|..+..+..++++.|.+. ..|..+.....+..+++..|..+ ..|..+...+++++
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 34578899999988776 55556677777888889888776 56777888888888888888887 78888888888888
Q ss_pred EEeeecccc
Q 036959 128 LSLRNNSFT 136 (233)
Q Consensus 128 L~l~~~~~~ 136 (233)
++.-++.+.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 888777654
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.47 E-value=0.4 Score=40.73 Aligned_cols=66 Identities=23% Similarity=0.244 Sum_probs=44.2
Q ss_pred cCCCCCcEEEecCCcCcCcCc--hHHhhcCCCCcEEEeecccccccCCCCccc--ccCCcEEEccCCcccC
Q 036959 144 YNISSLKWINLGFNSLSGTLP--NDMCNRLPKLQEIYLHSNKLFGQIPSSLSH--CIDLRRLWMSDNKFTG 210 (233)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~--~~~L~~L~l~~n~~~~ 210 (233)
.+.+.+..+++++|++. .+. ..+....|+++.|+|++|...-....++.+ ...|++|.+.||.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 45677888899999875 322 345557889999999998432111222333 3468889999998875
No 85
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.44 E-value=0.28 Score=40.23 Aligned_cols=133 Identities=16% Similarity=0.082 Sum_probs=65.9
Q ss_pred ceEeEEEecCCccc-cc-CCCCCCCCCCccEEEcccCc-cCCCCchh-hhccCCccEEEecCCccc--CCcchhhcCCCC
Q 036959 51 RRVRVLNLSNIGLQ-GT-IPPYLGNLSFLVYLNFGQNN-LYGHLPNE-LGQLHRLKSFGLEDNKFS--GSFPSWIGMLSK 124 (233)
Q Consensus 51 ~~l~~L~l~~~~l~-~~-~~~~~~~l~~L~~L~l~~n~-~~~~~~~~-l~~l~~L~~L~l~~~~i~--~~~~~~~~~l~~ 124 (233)
.+++.|..+++.-. +. +.....+..+|+.+-+..+. ++..-... -.+.+.|+.+++..+... ..+...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 45566666655432 11 11122345667777766664 22111111 134566777777766543 112222345677
Q ss_pred CcEEEeeeccccccC-----CccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccc
Q 036959 125 LQILSLRNNSFTGPI-----PWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNK 183 (233)
Q Consensus 125 L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 183 (233)
|+.+.++.+...... ...-.....+..+.+.++...-.........+++|+.+++-+++
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 777777766532111 11112344677777777654312222223366777777777665
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=74.71 E-value=1.9 Score=20.38 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=7.0
Q ss_pred CCCEEEecCCcC
Q 036959 221 KLRDLYTANNHL 232 (233)
Q Consensus 221 ~L~~L~l~~n~l 232 (233)
+|+.|++++|++
T Consensus 3 ~L~~L~vs~N~L 14 (26)
T smart00364 3 SLKELNVSNNQL 14 (26)
T ss_pred ccceeecCCCcc
Confidence 455666666655
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=73.55 E-value=2.2 Score=19.88 Aligned_cols=13 Identities=23% Similarity=0.268 Sum_probs=8.8
Q ss_pred cCCCCEEEecCCc
Q 036959 219 LSKLRDLYTANNH 231 (233)
Q Consensus 219 ~~~L~~L~l~~n~ 231 (233)
+++|+.|++++|+
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4567777777764
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.49 E-value=1.7 Score=37.11 Aligned_cols=65 Identities=22% Similarity=0.282 Sum_probs=43.4
Q ss_pred hcCCCCcEEEeeccccccc--CCCCcccccCCcEEEccCCcccCccchhccCc--CCCCEEEecCCcCC
Q 036959 169 NRLPKLQEIYLHSNKLFGQ--IPSSLSHCIDLRRLWMSDNKFTGRLRENIGNL--SKLRDLYTANNHLQ 233 (233)
Q Consensus 169 ~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~--~~L~~L~l~~n~l~ 233 (233)
.+.+.+..+.|++|++... +.......++|..|+|++|...-....++..+ ..|++|-+.||++.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 3667888899999987522 22233457899999999993221222334433 46889999999973
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=33.76 E-value=34 Score=35.75 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=21.5
Q ss_pred EeeeccccccCCccccCCCCCcEEEecCCcCc
Q 036959 129 SLRNNSFTGPIPWSFYNISSLKWINLGFNSLS 160 (233)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 160 (233)
+|++|+++...+..|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 35667777444556667777777777777665
No 90
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=24.86 E-value=1.5e+02 Score=25.46 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=14.3
Q ss_pred ceEeEEEecCCcccccCCCCC
Q 036959 51 RRVRVLNLSNIGLQGTIPPYL 71 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~ 71 (233)
+.++.++++.+.+.+..|-.+
T Consensus 165 pr~r~~dls~npi~dkvpihl 185 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHL 185 (553)
T ss_pred chhhhhccCCCcccccCCccc
Confidence 566788888887766555443
No 91
>TIGR02167 Liste_lipo_26 bacterial surface protein 26-residue repeat. This model describes a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, L. innocua, Enterococcus faecalis, Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=21.12 E-value=42 Score=15.71 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=5.9
Q ss_pred cCcCCCCEEEec
Q 036959 217 GNLSKLRDLYTA 228 (233)
Q Consensus 217 ~~~~~L~~L~l~ 228 (233)
.+++++..|+++
T Consensus 3 ~~~~~~~~ldls 14 (26)
T TIGR02167 3 SGCSSLTSLDVS 14 (26)
T ss_pred Cccccccccccc
Confidence 344555555544
Done!