Query 036959
Match_columns 233
No_of_seqs 179 out of 2679
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 11:44:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036959.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036959hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-35 4.5E-40 234.7 19.0 224 5-232 2-233 (313)
2 4eco_A Uncharacterized protein 100.0 4.4E-32 1.5E-36 233.2 12.4 224 4-232 25-365 (636)
3 4fcg_A Uncharacterized protein 100.0 1E-30 3.4E-35 208.0 17.3 222 5-232 23-289 (328)
4 3rgz_A Protein brassinosteroid 100.0 1.1E-30 3.6E-35 229.1 16.4 220 5-232 8-259 (768)
5 4ecn_A Leucine-rich repeat pro 100.0 8E-30 2.7E-34 224.1 13.6 225 4-233 264-608 (876)
6 2o6q_A Variable lymphocyte rec 100.0 1.7E-27 6E-32 184.4 17.7 182 51-233 37-218 (270)
7 3m19_A Variable lymphocyte rec 99.9 1.2E-26 4.3E-31 177.7 16.0 190 37-233 3-192 (251)
8 1ozn_A Reticulon 4 receptor; N 99.9 6.2E-26 2.1E-30 176.9 15.8 183 49-232 54-237 (285)
9 4fcg_A Uncharacterized protein 99.9 1.2E-25 4E-30 178.7 17.2 178 51-232 127-313 (328)
10 1ozn_A Reticulon 4 receptor; N 99.9 9.3E-26 3.2E-30 175.9 16.1 183 50-233 31-214 (285)
11 1ogq_A PGIP-2, polygalacturona 99.9 2.7E-26 9.1E-31 181.4 11.3 182 50-232 75-280 (313)
12 3rgz_A Protein brassinosteroid 99.9 9.8E-26 3.4E-30 197.7 15.8 181 51-232 466-716 (768)
13 2z66_A Variable lymphocyte rec 99.9 6.5E-25 2.2E-29 172.8 13.4 194 37-232 5-211 (306)
14 3rfs_A Internalin B, repeat mo 99.9 7.7E-24 2.6E-28 164.0 17.0 179 50-233 40-218 (272)
15 2z80_A TOLL-like receptor 2, v 99.9 1.4E-24 4.9E-29 174.1 11.9 200 32-233 23-235 (353)
16 1p9a_G Platelet glycoprotein I 99.9 6.1E-24 2.1E-28 166.1 14.1 178 51-233 31-208 (290)
17 2o6q_A Variable lymphocyte rec 99.9 3.4E-23 1.1E-27 160.3 17.2 193 36-233 2-194 (270)
18 2z66_A Variable lymphocyte rec 99.9 2.5E-24 8.5E-29 169.5 10.9 182 50-233 77-261 (306)
19 3zyi_A Leucine-rich repeat-con 99.9 1.2E-23 4.2E-28 174.1 15.5 183 51-233 75-279 (452)
20 2z62_A TOLL-like receptor 4, v 99.9 1.1E-23 3.8E-28 163.4 13.9 181 51-233 52-237 (276)
21 2z81_A CD282 antigen, TOLL-lik 99.9 6.5E-24 2.2E-28 179.6 13.0 195 38-233 3-209 (549)
22 3zyj_A Leucine-rich repeat-con 99.9 1.3E-23 4.6E-28 173.3 14.6 189 41-232 45-267 (440)
23 2xwt_C Thyrotropin receptor; s 99.9 1.8E-23 6.2E-28 158.9 14.1 179 51-233 31-218 (239)
24 3zyi_A Leucine-rich repeat-con 99.9 1.9E-23 6.5E-28 172.9 14.7 180 50-232 98-302 (452)
25 3v47_A TOLL-like receptor 5B a 99.9 1.7E-23 5.7E-28 173.2 14.3 135 51-185 30-167 (455)
26 3zyj_A Leucine-rich repeat-con 99.9 2.8E-23 9.6E-28 171.3 15.2 175 53-233 45-244 (440)
27 1wwl_A Monocyte differentiatio 99.9 1.3E-23 4.5E-28 165.8 12.6 179 50-232 94-286 (312)
28 3v47_A TOLL-like receptor 5B a 99.9 3.5E-23 1.2E-27 171.3 15.8 118 115-233 291-408 (455)
29 1p9a_G Platelet glycoprotein I 99.9 5E-23 1.7E-27 160.8 15.4 177 50-233 9-185 (290)
30 1xku_A Decorin; proteoglycan, 99.9 6E-23 2.1E-27 163.2 15.3 192 38-232 30-275 (330)
31 2id5_A Lingo-1, leucine rich r 99.9 1.6E-22 5.3E-27 168.4 17.2 183 50-233 55-261 (477)
32 2z62_A TOLL-like receptor 4, v 99.9 3.7E-23 1.3E-27 160.5 12.6 181 51-233 28-213 (276)
33 2id5_A Lingo-1, leucine rich r 99.9 1.7E-22 5.9E-27 168.2 17.4 182 50-232 103-308 (477)
34 3o6n_A APL1; leucine-rich repe 99.9 5.1E-23 1.8E-27 167.2 13.2 110 51-160 69-178 (390)
35 3o6n_A APL1; leucine-rich repe 99.9 2.3E-22 7.7E-27 163.4 16.4 86 51-136 93-178 (390)
36 2ft3_A Biglycan; proteoglycan, 99.9 1E-22 3.4E-27 162.1 13.4 192 38-233 32-277 (332)
37 3oja_B Anopheles plasmodium-re 99.9 3.2E-22 1.1E-26 170.9 16.8 110 51-160 75-184 (597)
38 3oja_B Anopheles plasmodium-re 99.9 9.5E-23 3.2E-27 174.2 13.3 182 51-233 51-291 (597)
39 2z80_A TOLL-like receptor 2, v 99.9 2.8E-23 9.5E-28 166.6 9.1 184 49-233 74-314 (353)
40 3rfs_A Internalin B, repeat mo 99.9 1.3E-22 4.4E-27 157.2 11.8 160 49-211 61-220 (272)
41 3vq2_A TLR4, TOLL-like recepto 99.9 3.5E-23 1.2E-27 177.0 9.3 179 51-232 376-557 (606)
42 2o6s_A Variable lymphocyte rec 99.9 1.5E-22 5E-27 150.7 11.5 177 37-221 5-190 (208)
43 4glp_A Monocyte differentiatio 99.9 2.2E-22 7.6E-27 158.7 13.1 179 51-233 91-285 (310)
44 3t6q_A CD180 antigen; protein- 99.9 1.3E-22 4.4E-27 173.5 12.6 182 50-232 349-535 (606)
45 1wwl_A Monocyte differentiatio 99.9 2.1E-23 7.3E-28 164.7 6.9 180 48-233 118-309 (312)
46 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-22 5.8E-27 172.8 12.9 184 49-233 348-534 (606)
47 3m19_A Variable lymphocyte rec 99.9 9.4E-22 3.2E-26 150.5 15.5 160 51-211 35-194 (251)
48 3t6q_A CD180 antigen; protein- 99.9 4.9E-22 1.7E-26 169.9 15.1 180 51-232 376-559 (606)
49 1xku_A Decorin; proteoglycan, 99.9 2.1E-21 7.2E-26 154.3 16.7 183 49-233 74-306 (330)
50 3j0a_A TOLL-like receptor 5; m 99.9 3.5E-22 1.2E-26 176.8 13.4 193 38-232 13-216 (844)
51 2ft3_A Biglycan; proteoglycan, 99.9 6.4E-22 2.2E-26 157.4 13.1 183 49-233 76-307 (332)
52 4eco_A Uncharacterized protein 99.9 1.2E-22 4.1E-27 174.7 9.2 179 49-232 247-445 (636)
53 1ziw_A TOLL-like receptor 3; i 99.9 1.8E-21 6.2E-26 168.5 15.8 182 50-232 404-621 (680)
54 2z63_A TOLL-like receptor 4, v 99.9 1.7E-22 6E-27 171.4 8.9 181 51-233 347-531 (570)
55 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-21 3.8E-26 164.9 13.7 158 72-233 321-481 (520)
56 1h6u_A Internalin H; cell adhe 99.9 2.7E-21 9.4E-26 152.3 14.8 169 50-233 62-230 (308)
57 3oja_A Leucine-rich immune mol 99.9 4.8E-22 1.7E-26 165.8 10.4 109 123-232 120-249 (487)
58 1ziw_A TOLL-like receptor 3; i 99.9 3.5E-21 1.2E-25 166.8 15.7 183 51-233 381-597 (680)
59 2v9t_B SLIT homolog 2 protein 99.9 2.1E-21 7.2E-26 145.7 12.3 152 54-209 14-165 (220)
60 3e6j_A Variable lymphocyte rec 99.9 1.1E-20 3.7E-25 142.7 16.0 166 28-211 9-174 (229)
61 2xwt_C Thyrotropin receptor; s 99.9 1.6E-21 5.4E-26 148.2 11.2 176 49-231 53-237 (239)
62 1h6u_A Internalin H; cell adhe 99.9 1E-20 3.6E-25 148.9 16.1 169 50-233 40-208 (308)
63 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.3E-21 1.5E-25 162.9 14.3 157 72-233 350-510 (562)
64 4ecn_A Leucine-rich repeat pro 99.9 9.2E-22 3.1E-26 173.2 10.5 178 49-232 446-656 (876)
65 4fmz_A Internalin; leucine ric 99.9 6.9E-21 2.4E-25 152.2 13.9 170 51-233 177-346 (347)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.1E-21 3.9E-26 155.0 9.1 178 49-233 56-250 (317)
67 2xot_A Amphoterin-induced prot 99.8 2.4E-21 8.2E-26 155.9 10.0 175 54-232 21-201 (361)
68 1h6t_A Internalin B; cell adhe 99.8 1.9E-20 6.3E-25 146.4 14.4 168 50-232 45-212 (291)
69 2o6s_A Variable lymphocyte rec 99.8 1.1E-20 3.7E-25 140.6 12.4 169 53-232 9-177 (208)
70 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-20 4.2E-25 141.5 12.8 154 54-211 14-168 (220)
71 2z7x_B TOLL-like receptor 1, v 99.8 1E-20 3.4E-25 159.1 13.4 85 49-136 43-128 (520)
72 2z63_A TOLL-like receptor 4, v 99.8 7.8E-21 2.7E-25 161.3 12.5 179 51-231 28-211 (570)
73 3j0a_A TOLL-like receptor 5; m 99.8 1.7E-20 5.7E-25 166.1 15.0 87 50-136 72-161 (844)
74 4ezg_A Putative uncharacterize 99.8 3.3E-20 1.1E-24 136.8 14.1 153 72-233 41-194 (197)
75 4g8a_A TOLL-like receptor 4; l 99.8 8E-21 2.7E-25 162.8 12.3 181 51-232 52-236 (635)
76 3e6j_A Variable lymphocyte rec 99.8 3.4E-20 1.2E-24 140.0 14.3 152 77-233 21-172 (229)
77 3o53_A Protein LRIM1, AGAP0063 99.8 4.8E-21 1.6E-25 151.5 9.1 179 50-233 33-227 (317)
78 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.6E-20 8.8E-25 158.1 14.0 106 51-159 52-158 (562)
79 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-20 5.4E-25 161.0 12.6 174 56-233 36-214 (635)
80 4fmz_A Internalin; leucine ric 99.8 9.4E-20 3.2E-24 145.6 16.0 170 51-233 155-324 (347)
81 4glp_A Monocyte differentiatio 99.8 2.8E-21 9.5E-26 152.4 6.8 179 48-233 114-307 (310)
82 3oja_A Leucine-rich immune mol 99.8 1.1E-20 3.8E-25 157.6 10.2 149 75-228 120-270 (487)
83 2ast_B S-phase kinase-associat 99.8 1.8E-21 6.2E-26 154.9 4.7 179 51-230 93-282 (336)
84 2z81_A CD282 antigen, TOLL-lik 99.8 1.9E-20 6.6E-25 158.3 10.6 174 55-232 9-184 (549)
85 2v9t_B SLIT homolog 2 protein 99.8 8.2E-20 2.8E-24 137.0 12.8 148 37-185 9-165 (220)
86 1m9s_A Internalin B; cell inva 99.8 1.1E-19 3.6E-24 154.9 13.2 168 50-232 42-209 (605)
87 1o6v_A Internalin A; bacterial 99.8 2.5E-19 8.6E-24 148.7 15.0 168 51-232 199-387 (466)
88 2ast_B S-phase kinase-associat 99.8 4.8E-21 1.6E-25 152.5 4.4 180 51-231 70-258 (336)
89 1o6v_A Internalin A; bacterial 99.8 5.5E-19 1.9E-23 146.7 16.8 170 48-232 174-343 (466)
90 4ay9_X Follicle-stimulating ho 99.8 1.5E-19 5.2E-24 144.8 12.3 194 38-233 8-215 (350)
91 2v70_A SLIT-2, SLIT homolog 2 99.8 2.9E-19 9.8E-24 134.1 12.7 133 52-185 33-166 (220)
92 1xeu_A Internalin C; cellular 99.8 8.8E-20 3E-24 140.5 8.8 147 51-211 41-187 (263)
93 3cvr_A Invasion plasmid antige 99.8 1E-19 3.5E-24 153.7 9.8 182 26-233 31-243 (571)
94 2xot_A Amphoterin-induced prot 99.8 7.9E-20 2.7E-24 147.0 8.8 172 37-209 16-202 (361)
95 4ezg_A Putative uncharacterize 99.8 5.2E-19 1.8E-23 130.4 12.2 152 50-210 43-195 (197)
96 2ca6_A RAN GTPase-activating p 99.8 3.9E-21 1.3E-25 155.9 0.7 183 50-233 93-316 (386)
97 2ca6_A RAN GTPase-activating p 99.8 3E-20 1E-24 150.7 5.2 184 50-233 59-287 (386)
98 3goz_A Leucine-rich repeat-con 99.8 4.5E-20 1.6E-24 148.5 5.6 84 53-136 24-122 (362)
99 3goz_A Leucine-rich repeat-con 99.8 8.6E-20 2.9E-24 146.8 5.0 178 55-232 2-208 (362)
100 3bz5_A Internalin-J, INLJ; leu 99.8 7.3E-18 2.5E-22 139.5 16.1 164 50-233 63-246 (457)
101 3bz5_A Internalin-J, INLJ; leu 99.8 8.4E-18 2.9E-22 139.1 15.9 144 49-209 40-183 (457)
102 3cvr_A Invasion plasmid antige 99.8 4.5E-18 1.6E-22 143.7 14.2 148 51-220 100-254 (571)
103 1h6t_A Internalin B; cell adhe 99.8 1E-17 3.4E-22 130.9 14.3 150 71-233 42-191 (291)
104 4b8c_D Glucose-repressible alc 99.8 9.7E-20 3.3E-24 158.5 2.0 201 8-217 131-337 (727)
105 2ell_A Acidic leucine-rich nuc 99.7 1.2E-17 4E-22 120.0 11.3 130 100-232 25-159 (168)
106 1w8a_A SLIT protein; signaling 99.7 1.8E-17 6.1E-22 121.7 11.4 130 78-211 11-141 (192)
107 1m9s_A Internalin B; cell inva 99.7 4.4E-17 1.5E-21 138.8 14.1 165 54-233 24-188 (605)
108 1xeu_A Internalin C; cellular 99.7 4.3E-17 1.5E-21 125.4 12.7 166 51-232 19-184 (263)
109 3g06_A SSPH2 (leucine-rich rep 99.7 1.5E-17 5.2E-22 142.0 11.1 100 25-136 9-114 (622)
110 1z7x_W Ribonuclease inhibitor; 99.7 1.8E-19 6.3E-24 149.1 -1.1 135 98-233 255-411 (461)
111 2ell_A Acidic leucine-rich nuc 99.7 2.1E-17 7.3E-22 118.6 9.7 132 75-209 24-160 (168)
112 2wfh_A SLIT homolog 2 protein 99.7 4.3E-17 1.5E-21 119.7 11.4 127 78-209 13-139 (193)
113 3g06_A SSPH2 (leucine-rich rep 99.7 1.6E-16 5.6E-21 135.6 16.4 77 147-233 221-297 (622)
114 1dce_A Protein (RAB geranylger 99.7 1.7E-20 5.9E-25 158.8 -8.3 103 124-232 442-545 (567)
115 2je0_A Acidic leucine-rich nuc 99.7 1.8E-17 6E-22 116.7 8.4 128 99-229 17-149 (149)
116 2o6r_A Variable lymphocyte rec 99.7 1.3E-16 4.6E-21 115.4 12.6 133 77-213 9-141 (177)
117 1z7x_W Ribonuclease inhibitor; 99.7 1.9E-18 6.5E-23 143.0 1.8 180 52-232 86-296 (461)
118 1jl5_A Outer protein YOPM; leu 99.7 5.5E-16 1.9E-20 128.2 15.5 119 76-209 132-250 (454)
119 1jl5_A Outer protein YOPM; leu 99.7 5E-16 1.7E-20 128.4 15.0 140 51-209 131-270 (454)
120 1w8a_A SLIT protein; signaling 99.7 1.4E-16 4.8E-21 116.8 10.5 131 54-188 11-142 (192)
121 2je0_A Acidic leucine-rich nuc 99.7 8.9E-17 3E-21 113.0 8.3 126 51-179 17-147 (149)
122 2wfh_A SLIT homolog 2 protein 99.7 6.2E-16 2.1E-20 113.5 12.6 127 54-185 13-139 (193)
123 1a9n_A U2A', U2A'; complex (nu 99.7 1.3E-16 4.3E-21 115.5 8.0 134 71-209 15-153 (176)
124 1ds9_A Outer arm dynein; leuci 99.7 1.1E-18 3.6E-23 128.8 -3.1 132 93-232 42-184 (198)
125 4b8c_D Glucose-repressible alc 99.7 2.1E-17 7.2E-22 143.8 4.3 107 51-161 224-330 (727)
126 2o6r_A Variable lymphocyte rec 99.7 1.3E-15 4.5E-20 110.2 12.3 131 54-188 10-140 (177)
127 4ay9_X Follicle-stimulating ho 99.6 2.1E-16 7.3E-21 126.4 7.8 163 49-213 52-219 (350)
128 3sb4_A Hypothetical leucine ri 99.6 1E-15 3.5E-20 121.5 9.9 102 122-226 225-327 (329)
129 1ds9_A Outer arm dynein; leuci 99.6 1.1E-17 3.9E-22 123.3 -3.8 151 52-210 19-186 (198)
130 1a9n_A U2A', U2A'; complex (nu 99.6 1.7E-15 6E-20 109.4 7.1 129 97-231 17-151 (176)
131 3g39_A Variable lymphocyte rec 99.6 1.7E-14 5.9E-19 103.6 9.9 108 100-211 10-117 (170)
132 2r9u_A Variable lymphocyte rec 99.5 3.1E-14 1.1E-18 102.6 10.2 107 101-211 14-120 (174)
133 1dce_A Protein (RAB geranylger 99.5 3.3E-14 1.1E-18 120.4 11.0 170 51-227 349-567 (567)
134 3ogk_B Coronatine-insensitive 99.5 7.4E-16 2.5E-20 131.3 0.1 184 50-233 292-526 (592)
135 3sb4_A Hypothetical leucine ri 99.5 3.4E-14 1.1E-18 112.7 9.1 180 50-233 48-310 (329)
136 3ogk_B Coronatine-insensitive 99.5 5E-15 1.7E-19 126.2 2.6 58 73-131 190-251 (592)
137 3un9_A NLR family member X1; l 99.5 1.6E-15 5.5E-20 122.1 -0.8 167 51-217 72-260 (372)
138 3g39_A Variable lymphocyte rec 99.5 2.7E-13 9.3E-18 97.3 10.6 106 53-161 11-116 (170)
139 2r9u_A Variable lymphocyte rec 99.5 3.9E-13 1.3E-17 96.8 10.6 105 78-186 15-119 (174)
140 3un9_A NLR family member X1; l 99.4 2.3E-15 8E-20 121.2 -4.4 160 74-233 71-252 (372)
141 2p1m_B Transport inhibitor res 99.4 1.5E-14 5.2E-19 123.2 -1.4 180 51-232 289-518 (594)
142 2p1m_B Transport inhibitor res 99.4 3E-13 1E-17 115.2 5.8 110 73-182 103-221 (594)
143 2ifg_A High affinity nerve gro 99.4 2.1E-12 7.1E-17 103.0 9.0 104 103-210 12-117 (347)
144 4fdw_A Leucine rich hypothetic 99.3 1.9E-11 6.5E-16 99.3 13.0 174 52-232 158-357 (401)
145 2ra8_A Uncharacterized protein 99.3 2E-12 6.9E-17 103.5 6.0 180 51-233 107-320 (362)
146 4fdw_A Leucine rich hypothetic 99.3 2.9E-11 9.9E-16 98.3 12.4 173 51-230 135-333 (401)
147 2ifg_A High affinity nerve gro 99.2 2.9E-11 9.8E-16 96.4 9.5 102 57-161 14-117 (347)
148 2ra8_A Uncharacterized protein 99.1 7.6E-11 2.6E-15 94.3 5.6 178 49-231 137-341 (362)
149 1io0_A Tropomodulin; LRR prote 98.8 6.9E-10 2.4E-14 80.5 1.1 62 171-232 92-163 (185)
150 3rw6_A Nuclear RNA export fact 98.7 3.2E-09 1.1E-13 81.1 1.2 79 121-202 168-257 (267)
151 1io0_A Tropomodulin; LRR prote 98.6 1.3E-08 4.4E-13 73.8 2.8 63 146-209 92-164 (185)
152 3e4g_A ATP synthase subunit S, 98.6 2.9E-08 1E-12 70.7 3.3 88 122-210 60-154 (176)
153 4fs7_A Uncharacterized protein 98.5 7.9E-07 2.7E-11 72.0 10.3 128 95-230 249-376 (394)
154 3rw6_A Nuclear RNA export fact 98.4 4.1E-07 1.4E-11 69.4 6.0 80 144-226 167-257 (267)
155 4fs7_A Uncharacterized protein 98.4 2.7E-06 9.3E-11 68.8 11.0 164 51-225 230-393 (394)
156 4gt6_A Cell surface protein; l 98.4 9E-06 3.1E-10 65.7 13.6 107 119-230 261-367 (394)
157 3e4g_A ATP synthase subunit S, 98.4 2.7E-07 9.1E-12 65.8 3.9 83 76-158 62-150 (176)
158 4h09_A Hypothetical leucine ri 98.3 4.1E-06 1.4E-10 67.3 11.0 128 96-228 214-341 (379)
159 4h09_A Hypothetical leucine ri 98.3 7E-06 2.4E-10 65.9 11.8 149 68-222 210-358 (379)
160 4gt6_A Cell surface protein; l 98.3 3.5E-06 1.2E-10 68.2 9.9 133 92-232 258-390 (394)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 2.1E-05 7.3E-10 57.0 1.7 65 96-160 38-111 (197)
162 3rfe_A Platelet glycoprotein I 97.5 0.00019 6.5E-09 48.5 5.8 56 151-209 12-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00016 5.5E-09 52.4 4.0 112 71-183 37-168 (197)
164 3rfe_A Platelet glycoprotein I 96.8 0.0027 9.2E-08 42.7 5.5 36 148-184 32-67 (130)
165 2lz0_A Uncharacterized protein 79.7 2.6 8.7E-05 26.5 4.0 44 162-206 10-53 (100)
166 2lz0_A Uncharacterized protein 73.4 10 0.00035 23.7 5.5 37 94-131 15-51 (100)
167 3s1b_A Mini-Z; VEGF, cystine k 26.2 38 0.0013 15.6 1.4 18 11-28 3-20 (34)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.3e-35 Score=234.71 Aligned_cols=224 Identities=28% Similarity=0.502 Sum_probs=196.5
Q ss_pred ecchhhHHHHHHHHHhcCCCchhhcCCCCCCCCCCC--ccceeecCCC--ceEeEEEecCCcccc--cCCCCCCCCCCcc
Q 036959 5 KNITTDQSALLMFKAHVIDPHSVLANNWSISYPLCN--WVGVSCGARH--RRVRVLNLSNIGLQG--TIPPYLGNLSFLV 78 (233)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~l~~L~l~~~~l~~--~~~~~~~~l~~L~ 78 (233)
.|...|.++|++||+++.+|. .+.+ |..+.++|. |.|+.|.... .+++.|+++++.+.+ .+|..+..+++|+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~ 79 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN 79 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence 578899999999999998886 6676 988889999 9999998654 789999999999998 8999999999999
Q ss_pred EEEccc-CccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCC
Q 036959 79 YLNFGQ-NNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFN 157 (233)
Q Consensus 79 ~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 157 (233)
+|++++ |.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 159 (313)
T 1ogq_A 80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159 (313)
T ss_dssp EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence 999995 8898889999999999999999999998788888999999999999999999888999999999999999999
Q ss_pred cCcCcCchHHhhcCC-CCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 158 SLSGTLPNDMCNRLP-KLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 158 ~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
.+.+.+|..+. .++ +|+.|++++|.+.+..|..+..++ |++|++++|.+.+..|..+..+++|+.|++++|++
T Consensus 160 ~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 160 RISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp CCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred cccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 99877887776 565 899999999998877787777776 88888888887777777777777777777777765
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.4e-32 Score=233.20 Aligned_cols=224 Identities=26% Similarity=0.337 Sum_probs=190.8
Q ss_pred eecchhhHHHHHHHHHhcCCCchhhcC-------CCCCCCCCCCc---cceeecCCCceEeEEEecCCcccccCCCCCCC
Q 036959 4 VKNITTDQSALLMFKAHVIDPHSVLAN-------NWSISYPLCNW---VGVSCGARHRRVRVLNLSNIGLQGTIPPYLGN 73 (233)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~ 73 (233)
.++..+|+.||.+|+.++.++.|...+ +|..+.++|.| .||+|... .+|+.|+++++.+.|.+|+.++.
T Consensus 25 ~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~ 103 (636)
T 4eco_A 25 TAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQ 103 (636)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGG
T ss_pred hhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhc
Confidence 345568999999999999988877554 69999999999 99999876 79999999999999999999999
Q ss_pred CCCccEEEcccCcc------------------------------------------------------------------
Q 036959 74 LSFLVYLNFGQNNL------------------------------------------------------------------ 87 (233)
Q Consensus 74 l~~L~~L~l~~n~~------------------------------------------------------------------ 87 (233)
+++|++|++++|.+
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l 183 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence 99999999998843
Q ss_pred ------------CCCCchhhhccCCccEEEecCCcccCC-----------------cchhhc--CCCCCcEEEeeecccc
Q 036959 88 ------------YGHLPNELGQLHRLKSFGLEDNKFSGS-----------------FPSWIG--MLSKLQILSLRNNSFT 136 (233)
Q Consensus 88 ------------~~~~~~~l~~l~~L~~L~l~~~~i~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~ 136 (233)
++ +|..+..+++|++|++++|.+.+. .|..+. .+++|++|++++|.+.
T Consensus 184 ~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~ 262 (636)
T 4eco_A 184 KDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL 262 (636)
T ss_dssp CTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC
T ss_pred hhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC
Confidence 23 677899999999999999999864 888888 9999999999999999
Q ss_pred ccCCccccCCCCCcEEEecCCc-CcC-cCchHHhhcC------CCCcEEEeecccccccCCC--CcccccCCcEEEccCC
Q 036959 137 GPIPWSFYNISSLKWINLGFNS-LSG-TLPNDMCNRL------PKLQEIYLHSNKLFGQIPS--SLSHCIDLRRLWMSDN 206 (233)
Q Consensus 137 ~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~------~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n 206 (233)
+.+|..+.++++|+.|++++|. +++ .+|..+. .+ ++|++|++++|.+. .+|. .++.+++|++|++++|
T Consensus 263 ~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 263 TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC
T ss_pred ccChHHHhcCCCCCEEECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC
Confidence 8999999999999999999998 876 6777665 33 78888888888887 6777 7788888888888888
Q ss_pred cccCccchhccCcCCCCEEEecCCcC
Q 036959 207 KFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 207 ~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
.+++.+| .+..+++|+.|++++|++
T Consensus 341 ~l~g~ip-~~~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 341 QLEGKLP-AFGSEIKLASLNLAYNQI 365 (636)
T ss_dssp CCEEECC-CCEEEEEESEEECCSSEE
T ss_pred cCccchh-hhCCCCCCCEEECCCCcc
Confidence 8876666 677777777777777754
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1e-30 Score=207.96 Aligned_cols=222 Identities=23% Similarity=0.297 Sum_probs=146.8
Q ss_pred ecchhhHHHHHHHHHhcC-CCchhhcCCC----CCCCCCCCccceeecC--------CCceEeEEEecCCcccccCCCCC
Q 036959 5 KNITTDQSALLMFKAHVI-DPHSVLANNW----SISYPLCNWVGVSCGA--------RHRRVRVLNLSNIGLQGTIPPYL 71 (233)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~~l~~L~l~~~~l~~~~~~~~ 71 (233)
+....+..+|++|+.++. ++..+... | ....+.|.|.|+.|.. ..++++.|+++++.+. .+|..+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 456688999999999995 77777776 9 5567899999999852 3356777777777776 566666
Q ss_pred CCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCC-----------
Q 036959 72 GNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIP----------- 140 (233)
Q Consensus 72 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----------- 140 (233)
..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|...+.+|
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 66777777777777766 56666666777777777777666 556566666666666666655444444
Q ss_pred ---------------------ccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCc
Q 036959 141 ---------------------WSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLR 199 (233)
Q Consensus 141 ---------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 199 (233)
..+..+++|+.|++++|.+. .++..+. .+++|++|++++|.+.+.+|..+..+++|+
T Consensus 179 ~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 34444555555555555555 3444332 556666666666666556666666666666
Q ss_pred EEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 200 RLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 200 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
+|++++|.+.+.+|..+..+++|+.|++++|++
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 666666666666666666666666666666654
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=1.1e-30 Score=229.08 Aligned_cols=220 Identities=25% Similarity=0.360 Sum_probs=174.0
Q ss_pred ecchhhHHHHHHHHHhcCCCchhhcCCCCCCCCCCCccceeecCCCceEeEEEecCCccccc---CC-------------
Q 036959 5 KNITTDQSALLMFKAHVIDPHSVLANNWSISYPLCNWVGVSCGARHRRVRVLNLSNIGLQGT---IP------------- 68 (233)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~---~~------------- 68 (233)
++.+.|+++|++||+++.+|. .+.+ |..+.++|.|.||+|. .++|+.|+++++.+.+. ++
T Consensus 8 ~~~~~~~~all~~k~~~~~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred cCCHHHHHHHHHHHhhCCCcc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 446789999999999999988 7776 9988899999999998 47999999999888765 33
Q ss_pred ----------CCCCCCCCccEEEcccCccCCCCch--hhhccCCccEEEecCCcccCCcchhh-cCCCCCcEEEeeeccc
Q 036959 69 ----------PYLGNLSFLVYLNFGQNNLYGHLPN--ELGQLHRLKSFGLEDNKFSGSFPSWI-GMLSKLQILSLRNNSF 135 (233)
Q Consensus 69 ----------~~~~~l~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~~~i~~~~~~~~-~~l~~L~~L~l~~~~~ 135 (233)
..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 4566777778888887777766666 67777888888888877765555443 5677788888877777
Q ss_pred cccCCcc---ccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCcc
Q 036959 136 TGPIPWS---FYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRL 212 (233)
Q Consensus 136 ~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 212 (233)
++..+.. +..+++|+.|++++|.+.+..+. ..+++|++|++++|.+.+.+|. ++.+++|++|++++|.+++..
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence 7655554 56777788888888777654443 3678888888888888876666 888899999999999988888
Q ss_pred chhccCcCCCCEEEecCCcC
Q 036959 213 RENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 213 ~~~l~~~~~L~~L~l~~n~l 232 (233)
|..+..+++|+.|++++|++
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQF 259 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCC
T ss_pred cHHHhcCCCCCEEECCCCcc
Confidence 88889999999999988876
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=8e-30 Score=224.13 Aligned_cols=225 Identities=24% Similarity=0.332 Sum_probs=181.2
Q ss_pred eecchhhHHHHHHHHHhcCCCchhhcCCCCCCCCC--CCc------------cceeecCCCceEeEEEecCCcccccCCC
Q 036959 4 VKNITTDQSALLMFKAHVIDPHSVLANNWSISYPL--CNW------------VGVSCGARHRRVRVLNLSNIGLQGTIPP 69 (233)
Q Consensus 4 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~~l~~L~l~~~~l~~~~~~ 69 (233)
.++...|+++|++||+++.+|.|....+| ...++ |.| .||.|... .+|+.|+|+++.+.|.+|+
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~~W~~~~~~-~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGKNWRYYSGT-INNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGGGCCCCCSS-CSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEEEECG
T ss_pred cccchHHHHHHHHHHHHcCCCCCCcCCCc-ccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCCcCch
Confidence 34556899999999999988733322212 11255 999 99999864 7899999999999999999
Q ss_pred CCCCCCCccEEEc-ccCccCCC----------------------------------------------------------
Q 036959 70 YLGNLSFLVYLNF-GQNNLYGH---------------------------------------------------------- 90 (233)
Q Consensus 70 ~~~~l~~L~~L~l-~~n~~~~~---------------------------------------------------------- 90 (233)
.++.+++|+.|++ ++|.+.+.
T Consensus 342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~ 421 (876)
T 4ecn_A 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421 (876)
T ss_dssp GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence 9999999999999 66643211
Q ss_pred ------------------CchhhhccCCccEEEecCCcccC-----------------Ccchhhc--CCCCCcEEEeeec
Q 036959 91 ------------------LPNELGQLHRLKSFGLEDNKFSG-----------------SFPSWIG--MLSKLQILSLRNN 133 (233)
Q Consensus 91 ------------------~~~~l~~l~~L~~L~l~~~~i~~-----------------~~~~~~~--~l~~L~~L~l~~~ 133 (233)
+|..+..+++|+.|++++|.+.+ .+|..+. .+++|++|++++|
T Consensus 422 ~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N 501 (876)
T 4ecn_A 422 RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501 (876)
T ss_dssp CCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC
T ss_pred ccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC
Confidence 67889999999999999999986 2777766 8999999999999
Q ss_pred cccccCCccccCCCCCcEEEecCCc-CcC-cCchHHhh------cCCCCcEEEeecccccccCCC--CcccccCCcEEEc
Q 036959 134 SFTGPIPWSFYNISSLKWINLGFNS-LSG-TLPNDMCN------RLPKLQEIYLHSNKLFGQIPS--SLSHCIDLRRLWM 203 (233)
Q Consensus 134 ~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~------~~~~L~~L~l~~n~~~~~~~~--~~~~~~~L~~L~l 203 (233)
.+.+.+|..+.++++|+.|++++|. +.+ .+|..+.. .+++|+.|++++|.+. .+|. .++.+++|+.|++
T Consensus 502 ~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence 9988999999999999999999998 876 56765541 2348888888888887 6777 7788888888888
Q ss_pred cCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 204 SDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 204 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
++|.++ .+| .++.+++|+.|++++|+++
T Consensus 581 s~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 581 VHNKVR-HLE-AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp TTSCCC-BCC-CCCTTSEESEEECCSSCCS
T ss_pred CCCCcc-cch-hhcCCCcceEEECcCCccc
Confidence 888877 566 7777777888888777763
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.96 E-value=1.7e-27 Score=184.37 Aligned_cols=182 Identities=23% Similarity=0.318 Sum_probs=158.9
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|+++++.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 45889999999988666678999999999999999998655666788999999999999998666667788999999999
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 210 (233)
++|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 999998777777889999999999999998 6676666689999999999999987777778899999999999999998
Q ss_pred ccchhccCcCCCCEEEecCCcCC
Q 036959 211 RLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 211 ~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
..+..+..+++|+.|++++|+++
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 196 VPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCHHHhccccCCCEEEecCCCee
Confidence 77778899999999999999874
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.95 E-value=1.2e-26 Score=177.72 Aligned_cols=190 Identities=21% Similarity=0.288 Sum_probs=167.0
Q ss_pred CCCCccceeecCCCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcc
Q 036959 37 PLCNWVGVSCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFP 116 (233)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~ 116 (233)
.++.|.|..|. ...+.++++++.+. .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 46678899995 45678999999987 6666554 689999999999998888889999999999999999997777
Q ss_pred hhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCccccc
Q 036959 117 SWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCI 196 (233)
Q Consensus 117 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 196 (233)
..|..+++|++|++++|.++...+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence 77889999999999999999766777889999999999999998 67776666899999999999999877777889999
Q ss_pred CCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 197 DLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 197 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+|+.|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 9999999999999888889999999999999999974
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=6.2e-26 Score=176.92 Aligned_cols=183 Identities=22% Similarity=0.274 Sum_probs=136.9
Q ss_pred CCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCc-cCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcE
Q 036959 49 RHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNN-LYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQI 127 (233)
Q Consensus 49 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 127 (233)
..++++.|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+....+..+..+++|++
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 34667777777777776666777777777777777776 55444666777777888888877777555666777778888
Q ss_pred EEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCc
Q 036959 128 LSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNK 207 (233)
Q Consensus 128 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 207 (233)
|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 888888777555555777778888888888776 5555444467888888888888877777778888888888888888
Q ss_pred ccCccchhccCcCCCCEEEecCCcC
Q 036959 208 FTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 208 ~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
+++..+..+..+++|+.|++++|++
T Consensus 213 l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 213 LSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp CSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred CCcCCHHHcccCcccCEEeccCCCc
Confidence 8877667788888888888888876
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.2e-25 Score=178.72 Aligned_cols=178 Identities=20% Similarity=0.223 Sum_probs=141.1
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhc---------cCCccEEEecCCcccCCcchhhcC
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQ---------LHRLKSFGLEDNKFSGSFPSWIGM 121 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~---------l~~L~~L~l~~~~i~~~~~~~~~~ 121 (233)
++++.|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+. .+|..+..
T Consensus 127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~ 204 (328)
T 4fcg_A 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204 (328)
T ss_dssp TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGG
T ss_pred CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcC
Confidence 45555555555555 45555555666666666665555555544433 666666666666666 66777788
Q ss_pred CCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEE
Q 036959 122 LSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRL 201 (233)
Q Consensus 122 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 201 (233)
+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+.+|..+..+++|+.|
T Consensus 205 l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG-GRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp CTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTT-CCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred CCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhc-CCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 889999999999988 5677788999999999999998877777655 89999999999999999999999999999999
Q ss_pred EccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 202 WMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 202 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
++++|.+.+.+|..++.+++|+.+++..+.+
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred eCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 9999999999999999999999999988765
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9.3e-26 Score=175.94 Aligned_cols=183 Identities=21% Similarity=0.259 Sum_probs=165.6
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCc-ccCCcchhhcCCCCCcEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNK-FSGSFPSWIGMLSKLQIL 128 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-i~~~~~~~~~~l~~L~~L 128 (233)
.++++.|+++++.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4689999999999997777889999999999999999987778889999999999999997 775667888999999999
Q ss_pred EeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcc
Q 036959 129 SLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKF 208 (233)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 208 (233)
++++|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 99999999777888899999999999999998 66665556899999999999999877677789999999999999999
Q ss_pred cCccchhccCcCCCCEEEecCCcCC
Q 036959 209 TGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 209 ~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
++..|..+..+++|+.|++++|+++
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cccCHhHccCcccccEeeCCCCcCC
Confidence 9888999999999999999999874
No 11
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=2.7e-26 Score=181.36 Aligned_cols=182 Identities=26% Similarity=0.405 Sum_probs=125.8
Q ss_pred CceEeEEEecC-CcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEE
Q 036959 50 HRRVRVLNLSN-IGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQIL 128 (233)
Q Consensus 50 ~~~l~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 128 (233)
.++++.|++++ +.+.+.+|..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 46788888884 77777778788888888888888888877777778888888888888888876777777778888888
Q ss_pred EeeeccccccCCccccCCC-CCcEEEecCCcCcCcCchHHh----------------------hcCCCCcEEEeeccccc
Q 036959 129 SLRNNSFTGPIPWSFYNIS-SLKWINLGFNSLSGTLPNDMC----------------------NRLPKLQEIYLHSNKLF 185 (233)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~----------------------~~~~~L~~L~l~~n~~~ 185 (233)
++++|.+++.+|..+..++ +|+.|++++|.+.+..|..+. ..+++|+.|++++|.+.
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 8888877767777776666 777777777776644444333 23444444444444444
Q ss_pred ccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 186 GQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 186 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
+..+. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++
T Consensus 235 ~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 235 FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 33332 44455666666666666666666666677777777777665
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=9.8e-26 Score=197.66 Aligned_cols=181 Identities=31% Similarity=0.531 Sum_probs=108.3
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 545 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEEC
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEEC
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred eeccccccCCccc-------------------------------------------------------------------
Q 036959 131 RNNSFTGPIPWSF------------------------------------------------------------------- 143 (233)
Q Consensus 131 ~~~~~~~~~~~~~------------------------------------------------------------------- 143 (233)
++|.+.+.+|..+
T Consensus 546 s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~ 625 (768)
T 3rgz_A 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625 (768)
T ss_dssp CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECC
T ss_pred CCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCc
Confidence 5555544333221
Q ss_pred ---cCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcC
Q 036959 144 ---YNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLS 220 (233)
Q Consensus 144 ---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 220 (233)
..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+++.+|..++.++.|+.|||++|.+++.+|..++.++
T Consensus 626 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~ 704 (768)
T 3rgz_A 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704 (768)
T ss_dssp CSCSSSBCCCEEECCSSCCBSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred hhhhccccccEEECcCCcccccCCHHHh-ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence 1234455666666666666665554 666677777777777666777777777777777777777777777777777
Q ss_pred CCCEEEecCCcC
Q 036959 221 KLRDLYTANNHL 232 (233)
Q Consensus 221 ~L~~L~l~~n~l 232 (233)
+|+.|++++|++
T Consensus 705 ~L~~L~ls~N~l 716 (768)
T 3rgz_A 705 MLTEIDLSNNNL 716 (768)
T ss_dssp CCSEEECCSSEE
T ss_pred CCCEEECcCCcc
Confidence 777777777765
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.92 E-value=6.5e-25 Score=172.80 Aligned_cols=194 Identities=18% Similarity=0.201 Sum_probs=119.9
Q ss_pred CCCCccceeecCC---------CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCC--CchhhhccCCccEEE
Q 036959 37 PLCNWVGVSCGAR---------HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGH--LPNELGQLHRLKSFG 105 (233)
Q Consensus 37 ~~~~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~ 105 (233)
-.|.|.++.|... .++++.|+++++.+....+..|..+++|++|++++|.+... .+..+..+++|++|+
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 3477888888752 25799999999999855555678999999999999988622 356666777888888
Q ss_pred ecCCcccCCcchhhcCCCCCcEEEeeeccccccCC-ccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccc
Q 036959 106 LEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIP-WSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKL 184 (233)
Q Consensus 106 l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 184 (233)
+++|.+. ..+..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECST-TTTTTCTTCCEEECTTCEE
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccch-hhcccCcCCCEEECCCCcc
Confidence 8877776 455556666777777777766663332 345555666666666665542222 2222455555555555555
Q ss_pred cc-cCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 185 FG-QIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 185 ~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
.+ ..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l 211 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc
Confidence 43 3444445555555555555555444444444455555555555443
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=7.7e-24 Score=164.03 Aligned_cols=179 Identities=21% Similarity=0.307 Sum_probs=154.3
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
.++++.|+++++.+. .+ ..+..+++|++|++++|.+.+ . ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~-~~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SV-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCC-CC-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcc-cc-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 477899999999886 33 347889999999999999874 3 4688999999999999999866666788899999999
Q ss_pred eeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 130 LRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
+++|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 9999998666667888999999999999998 666665568899999999999998777777888999999999999999
Q ss_pred CccchhccCcCCCCEEEecCCcCC
Q 036959 210 GRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 210 ~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+..+..+..+++|+.|++++|+++
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc
Confidence 888888899999999999999874
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.4e-24 Score=174.13 Aligned_cols=200 Identities=20% Similarity=0.218 Sum_probs=165.5
Q ss_pred CCCCCCCCCccceeecC-----------CCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCC
Q 036959 32 WSISYPLCNWVGVSCGA-----------RHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHR 100 (233)
Q Consensus 32 ~~~~~~~~~~~~~~~~~-----------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 100 (233)
|..+...|.|.++ |.. -.++++.|+++++.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 5556678888876 442 1257999999999999766668999999999999999998777788999999
Q ss_pred ccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCC-ccccCCCCCcEEEecCCc-CcCcCchHHhhcCCCCcEEE
Q 036959 101 LKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIP-WSFYNISSLKWINLGFNS-LSGTLPNDMCNRLPKLQEIY 178 (233)
Q Consensus 101 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~ 178 (233)
|++|++++|.+....+..+..+++|++|++++|.+....+ ..+..+++|+.|++++|. +. .++...+..+++|++|+
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~ 180 (353)
T 2z80_A 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELE 180 (353)
T ss_dssp CCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEE
T ss_pred CCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEE
Confidence 9999999999995555558899999999999999984333 378889999999999995 54 55554555889999999
Q ss_pred eecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 179 LHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 179 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+++|.+.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|.++
T Consensus 181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 9999999888999999999999999999987554445567899999999999874
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=6.1e-24 Score=166.05 Aligned_cols=178 Identities=22% Similarity=0.212 Sum_probs=156.5
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|++++|.+.+..+..|..+++|++|++++|.+... +. ...+++|++|++++|.+. .+|..+..+++|++|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 6789999999999877788899999999999999998743 32 268899999999999998 77888888999999999
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 210 (233)
++|.++...+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|++....+..+..+++|+.|++++|.++
T Consensus 108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp CSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred CCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 999999666678999999999999999998 677777668999999999999998666667788999999999999998
Q ss_pred ccchhccCcCCCCEEEecCCcCC
Q 036959 211 RLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 211 ~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
.+|..+...++|+.|++++|++.
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccChhhcccccCCeEEeCCCCcc
Confidence 67777888889999999999874
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.4e-23 Score=160.27 Aligned_cols=193 Identities=22% Similarity=0.280 Sum_probs=167.7
Q ss_pred CCCCCccceeecCCCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCc
Q 036959 36 YPLCNWVGVSCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSF 115 (233)
Q Consensus 36 ~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~ 115 (233)
++.|.|.|..|... ...+.++++++.++ .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 58999999988643 45678999999998 5676554 68999999999998766678999999999999999998655
Q ss_pred chhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccc
Q 036959 116 PSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHC 195 (233)
Q Consensus 116 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 195 (233)
+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence 566788999999999999999666667889999999999999998 5666556689999999999999987766778999
Q ss_pred cCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 196 IDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 196 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
++|++|++++|.+++..+..|..+++|+.|++++|+++
T Consensus 157 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 99999999999999888888999999999999999874
No 18
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.91 E-value=2.5e-24 Score=169.47 Aligned_cols=182 Identities=22% Similarity=0.260 Sum_probs=146.3
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCc-hhhhccCCccEEEecCCcccCCcchhhcCCCCCcEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLP-NELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQIL 128 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 128 (233)
.++++.|++++|.+. .++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 366777777777776 455567788888888888888875443 467888899999999988886777778888899999
Q ss_pred Eeeeccccc-cCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCc
Q 036959 129 SLRNNSFTG-PIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNK 207 (233)
Q Consensus 129 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 207 (233)
++++|.+.+ ..|..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 999998875 46778888899999999999887 4433334478899999999999887666677888999999999999
Q ss_pred ccCccchhccCcC-CCCEEEecCCcCC
Q 036959 208 FTGRLRENIGNLS-KLRDLYTANNHLQ 233 (233)
Q Consensus 208 ~~~~~~~~l~~~~-~L~~L~l~~n~l~ 233 (233)
+++..+..+..++ +|+.|++++|+++
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CcccCHHHHHhhhccCCEEEccCCCee
Confidence 9888888888884 8999999999863
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=1.2e-23 Score=174.05 Aligned_cols=183 Identities=25% Similarity=0.295 Sum_probs=131.6
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 57899999999999888888999999999999999998777788899999999999999998665666888899999999
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhh----------------------cCCCCcEEEeecccccccC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCN----------------------RLPKLQEIYLHSNKLFGQI 188 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~----------------------~~~~L~~L~l~~n~~~~~~ 188 (233)
++|.+....+..+..+++|+.|+++++...+.++...+. .+++|+.|++++|.+.+..
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEEC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccC
Confidence 998887544444555555555555543222233332222 4455666666666665555
Q ss_pred CCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 189 PSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 189 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|+++
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 666666667777777777666666666777777777777777653
No 20
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.1e-23 Score=163.41 Aligned_cols=181 Identities=19% Similarity=0.221 Sum_probs=103.4
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 131 (276)
T 2z62_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (276)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEEC
Confidence 44555555555554444444555555555555555554444444555555555555555555333334455555555555
Q ss_pred eecccccc-CCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCc----EEEeecccccccCCCCcccccCCcEEEccC
Q 036959 131 RNNSFTGP-IPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQ----EIYLHSNKLFGQIPSSLSHCIDLRRLWMSD 205 (233)
Q Consensus 131 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 205 (233)
++|.+.+. +|..+..+++|+.|++++|.+. .++...+..+++++ .|++++|.+.+..+..+ ...+|++|++++
T Consensus 132 ~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~ 209 (276)
T 2z62_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDT 209 (276)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCS
T ss_pred cCCccceecCchhhccCCCCCEEECCCCCCC-cCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCC
Confidence 55555432 3455555555555555555554 22222222333333 55555655554333333 334789999999
Q ss_pred CcccCccchhccCcCCCCEEEecCCcCC
Q 036959 206 NKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 206 n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
|.+++..+..+..+++|+.|++++|+++
T Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 210 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CceeecCHhHhcccccccEEEccCCccc
Confidence 9998777777889999999999999874
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.91 E-value=6.5e-24 Score=179.56 Aligned_cols=195 Identities=23% Similarity=0.231 Sum_probs=162.7
Q ss_pred CCCccceeecCC-----------CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEe
Q 036959 38 LCNWVGVSCGAR-----------HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGL 106 (233)
Q Consensus 38 ~~~~~~~~~~~~-----------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 106 (233)
.|.|.++ |... .++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4777776 5422 257999999999999888889999999999999999999777788999999999999
Q ss_pred cCCcccCCcchhhcCCCCCcEEEeeeccccc-cCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccc
Q 036959 107 EDNKFSGSFPSWIGMLSKLQILSLRNNSFTG-PIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLF 185 (233)
Q Consensus 107 ~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 185 (233)
++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|...+.++...+..+++|++|++++|.+.
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999997777779999999999999999985 356788999999999999998554676555568999999999999999
Q ss_pred ccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 186 GQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 186 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+..|..++.+++|+.|++++|.+.......+..+++|+.|++++|+++
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence 888988888888888888888776433333456788888888887763
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=1.3e-23 Score=173.25 Aligned_cols=189 Identities=28% Similarity=0.388 Sum_probs=117.6
Q ss_pred ccceeecCC---------CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcc
Q 036959 41 WVGVSCGAR---------HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKF 111 (233)
Q Consensus 41 ~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i 111 (233)
+..+.|... .++++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 446667642 25688899999988877778888888899999998888766677788888888888888888
Q ss_pred cCCcchhhcCCCCCcEEEeeeccccccCCcccc-------------------------CCCCCcEEEecCCcCcCcCchH
Q 036959 112 SGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFY-------------------------NISSLKWINLGFNSLSGTLPND 166 (233)
Q Consensus 112 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------------------~~~~L~~L~l~~~~~~~~~~~~ 166 (233)
....+..|..+++|++|++++|.+....+..+. .+++|+.|++++|.+. .+|.
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~- 202 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN- 202 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-
Confidence 755555677778888888888776643333333 3444444444444443 3332
Q ss_pred HhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 167 MCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 167 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..+..|..+++|+.|++++|++
T Consensus 203 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 203 -LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp -CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred -cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 11344555555555555444444444455555555555554444444444445555555555444
No 23
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.91 E-value=1.8e-23 Score=158.94 Aligned_cols=179 Identities=15% Similarity=0.170 Sum_probs=152.2
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCc-cCCCCchhhhccCCccEEEecC-CcccCCcchhhcCCCCCcEE
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNN-LYGHLPNELGQLHRLKSFGLED-NKFSGSFPSWIGMLSKLQIL 128 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L 128 (233)
++++.|+++++.+.+..+..|..+++|++|++++|. +....+..|..+++|++|++++ |.+....+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 579999999999997777789999999999999997 7755566789999999999998 99985555778899999999
Q ss_pred EeeeccccccCCccccCCCCCc---EEEecCC-cCcCcCchHHhhcCCCCc-EEEeecccccccCCCCcccccCCcEEEc
Q 036959 129 SLRNNSFTGPIPWSFYNISSLK---WINLGFN-SLSGTLPNDMCNRLPKLQ-EIYLHSNKLFGQIPSSLSHCIDLRRLWM 203 (233)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l 203 (233)
++++|.+.+ +|. +..+++|+ .|++++| .+. .++...+..+++|+ .|++++|.+....+..+.. ++|+.|++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 999999984 665 77888888 9999999 887 67766666889999 9999999998444444444 88999999
Q ss_pred cCCc-ccCccchhccCc-CCCCEEEecCCcCC
Q 036959 204 SDNK-FTGRLRENIGNL-SKLRDLYTANNHLQ 233 (233)
Q Consensus 204 ~~n~-~~~~~~~~l~~~-~~L~~L~l~~n~l~ 233 (233)
++|. +++..+..|..+ ++|+.|++++|+++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 9995 887777889999 99999999999874
No 24
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.9e-23 Score=172.91 Aligned_cols=180 Identities=15% Similarity=0.162 Sum_probs=143.8
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCC------
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLS------ 123 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~------ 123 (233)
.++++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|..++
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 47889999999999877778889999999999999998866666688888999999988887743333444444
Q ss_pred -------------------CCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccc
Q 036959 124 -------------------KLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKL 184 (233)
Q Consensus 124 -------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 184 (233)
+|++|++++|.+.+ +| .+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCC
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcC
Confidence 45555555555442 22 3556677888888888887 44444455899999999999999
Q ss_pred cccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 185 FGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 185 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 988888999999999999999999988888899999999999999986
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.7e-23 Score=173.22 Aligned_cols=135 Identities=20% Similarity=0.217 Sum_probs=69.4
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCC-chhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHL-PNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
++++.|++++|.+.+..+..|..+++|++|++++|.+.+.+ +..|..+++|++|++++|.+....|..+..+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 45666777766666555666666666666666666554222 33455556666666666555544445555555555555
Q ss_pred eeeccccccCCcc--ccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccc
Q 036959 130 LRNNSFTGPIPWS--FYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLF 185 (233)
Q Consensus 130 l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 185 (233)
+++|.+.+..+.. +..+++|+.|++++|.+.+..|..++..+++|++|++++|.+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 5555554322222 4444455555555554443223332334444444444444433
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=2.8e-23 Score=171.33 Aligned_cols=175 Identities=23% Similarity=0.279 Sum_probs=132.7
Q ss_pred EeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeee
Q 036959 53 VRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRN 132 (233)
Q Consensus 53 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 132 (233)
...++.++..+. .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 457888888887 6776664 6899999999999877778899999999999999999977778899999999999999
Q ss_pred ccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeec-------------------------cccccc
Q 036959 133 NSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHS-------------------------NKLFGQ 187 (233)
Q Consensus 133 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-------------------------n~~~~~ 187 (233)
|.++...+..+..+++|+.|++++|.+. .++...+..+++|+.|++++ |.+. .
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 9999666667899999999999999887 55544444555555555555 4333 1
Q ss_pred CCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 188 IPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 188 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+| .+..+++|+.|++++|.+++..+..|..+++|+.|++++|+++
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 22 2444556666666666666656667777777777777777653
No 27
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=1.3e-23 Score=165.83 Aligned_cols=179 Identities=20% Similarity=0.196 Sum_probs=130.7
Q ss_pred CceEeEEEecCCcccccCCCCC--CCCCCccEEEcccCccCCCCchhhhcc-----CCccEEEecCCcccCCcchhhcCC
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYL--GNLSFLVYLNFGQNNLYGHLPNELGQL-----HRLKSFGLEDNKFSGSFPSWIGML 122 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~~~i~~~~~~~~~~l 122 (233)
.++++.|++++|.+.+..|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4788999999999988788766 7889999999999998866 7777776 889999999999986666788888
Q ss_pred CCCcEEEeeecccccc--CCccc--cCCCCCcEEEecCCcCcC--cCchHHhhcCCCCcEEEeecccccccCC-CCcccc
Q 036959 123 SKLQILSLRNNSFTGP--IPWSF--YNISSLKWINLGFNSLSG--TLPNDMCNRLPKLQEIYLHSNKLFGQIP-SSLSHC 195 (233)
Q Consensus 123 ~~L~~L~l~~~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~ 195 (233)
++|++|++++|.+.+. .+..+ ..+++|+.|++++|.+.+ .++..++..+++|+.|++++|.+.+..| ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 9999999999886543 22233 677788888888888762 2233444466788888888887776553 344556
Q ss_pred cCCcEEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 196 IDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 196 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
++|++|++++|.++ .+|..+. ++|+.|++++|++
T Consensus 253 ~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp TTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC
T ss_pred CCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC
Confidence 67777777777766 4444444 5566666666655
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=3.5e-23 Score=171.26 Aligned_cols=118 Identities=20% Similarity=0.257 Sum_probs=86.2
Q ss_pred cchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCccc
Q 036959 115 FPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSH 194 (233)
Q Consensus 115 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 194 (233)
.|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|++|++++|.+.+..|..+..
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 3444555667777777777776555666777777777777777776 443344447788888888888887777777888
Q ss_pred ccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 195 CIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 195 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+++|++|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 888888888888888766667778888888888888764
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5e-23 Score=160.83 Aligned_cols=177 Identities=25% Similarity=0.340 Sum_probs=155.7
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
.++++.++++++.++ .+|..+. +.++.|++++|.+....+..+..+++|++|++++|.+.. .+.. ..+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEE
Confidence 477899999999998 6666554 689999999999987778889999999999999999984 4433 6789999999
Q ss_pred eeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 130 LRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
+++|.+. .+|..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 9999998 77888889999999999999998 666655668999999999999999777777889999999999999999
Q ss_pred CccchhccCcCCCCEEEecCCcCC
Q 036959 210 GRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 210 ~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
...+..+..+++|+.|++++|+++
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC
Confidence 777778899999999999999875
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=6e-23 Score=163.21 Aligned_cols=192 Identities=20% Similarity=0.309 Sum_probs=117.5
Q ss_pred CCCccceeecC---------CCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecC
Q 036959 38 LCNWVGVSCGA---------RHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLED 108 (233)
Q Consensus 38 ~~~~~~~~~~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 108 (233)
.|.|..+.|.. ..+.++.|+++++.+.+..+..|..+++|++|++++|.+....|..+..+++|++|++++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 45677777763 135788899999988866666788888999999998888876677888888888888888
Q ss_pred CcccCCcch----------------------hhcCCCCCcEEEeeeccccc--cCCccccCCCCCcEEEecCCcCcCcCc
Q 036959 109 NKFSGSFPS----------------------WIGMLSKLQILSLRNNSFTG--PIPWSFYNISSLKWINLGFNSLSGTLP 164 (233)
Q Consensus 109 ~~i~~~~~~----------------------~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~ 164 (233)
|.+. ..|. .+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+. .+|
T Consensus 110 n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~ 187 (330)
T 1xku_A 110 NQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP 187 (330)
T ss_dssp SCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCC
T ss_pred CcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCC
Confidence 7765 3332 23445555555555555431 23334444444444444444433 222
Q ss_pred h---------------------HHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCC
Q 036959 165 N---------------------DMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLR 223 (233)
Q Consensus 165 ~---------------------~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 223 (233)
. ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 188 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~ 266 (330)
T 1xku_A 188 QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQ 266 (330)
T ss_dssp SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCC
T ss_pred ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcC
Confidence 1 12224555555555555555444445555556666666666555 4455555666666
Q ss_pred EEEecCCcC
Q 036959 224 DLYTANNHL 232 (233)
Q Consensus 224 ~L~l~~n~l 232 (233)
.|++++|++
T Consensus 267 ~L~l~~N~i 275 (330)
T 1xku_A 267 VVYLHNNNI 275 (330)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCcC
Confidence 666666655
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.6e-22 Score=168.44 Aligned_cols=183 Identities=19% Similarity=0.162 Sum_probs=112.1
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
.++++.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 35556666666655555555566666666666666665544344455666666666666666544455566666666666
Q ss_pred eeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEE-------
Q 036959 130 LRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLW------- 202 (233)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~------- 202 (233)
+++|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|+
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc
Confidence 6666666555556666777777777777776 45555555677777777777776655554555554444444
Q ss_pred -----------------ccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 203 -----------------MSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 203 -----------------l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+++|.++...+..+..+++|+.|++++|+++
T Consensus 214 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 4445555444456667777777777777653
No 32
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3.7e-23 Score=160.50 Aligned_cols=181 Identities=19% Similarity=0.150 Sum_probs=155.8
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|+++++.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 56999999999999777778999999999999999998767778999999999999999998666678899999999999
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcC-cCchHHhhcCCCCcEEEeecccccccCCCCcccccCCc----EEEccC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSG-TLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLR----RLWMSD 205 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~~ 205 (233)
++|.+.+..+..+..+++|+.|++++|.+.+ .+|..+. .+++|+.|++++|.+.+..+..+..++.|+ .|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhc-cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 9999986666678899999999999999974 2455554 899999999999999877777777777777 899999
Q ss_pred CcccCccchhccCcCCCCEEEecCCcCC
Q 036959 206 NKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 206 n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
|.+.+..+..+. ..+|+.|++++|+++
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLK 213 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCS
T ss_pred CcccccCccccC-CCcccEEECCCCcee
Confidence 999866555544 458999999999874
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.7e-22 Score=168.16 Aligned_cols=182 Identities=19% Similarity=0.196 Sum_probs=100.7
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
.++++.|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 35667777777766655566666666666666666666555555556666666666666666543334455555555555
Q ss_pred eeeccccccCCccccCC------------------------CCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccc
Q 036959 130 LRNNSFTGPIPWSFYNI------------------------SSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLF 185 (233)
Q Consensus 130 l~~~~~~~~~~~~~~~~------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 185 (233)
+++|.+.+..+..+..+ .+|+.|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus 183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCC
Confidence 55554443322222222 24444555555554 444444445666666666666665
Q ss_pred ccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 186 GQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 186 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
+..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|++
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence 54444555555555555555555554455555555555555555544
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=5.1e-23 Score=167.20 Aligned_cols=110 Identities=24% Similarity=0.234 Sum_probs=82.2
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|+++++.+.+..+..|..+++|++|++++|.+....|..+..+++|++|++++|.+....+..|..+++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 56777777777777666667777888888888888777666666777888888888888877433344577788888888
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCc
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLS 160 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 160 (233)
++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 888877666666777788888888888775
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=2.3e-22 Score=163.40 Aligned_cols=86 Identities=17% Similarity=0.214 Sum_probs=43.6
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++
T Consensus 93 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 93 HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred CCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 45555555555555444444555555555555555554322223445555555555555555444444555555555555
Q ss_pred eecccc
Q 036959 131 RNNSFT 136 (233)
Q Consensus 131 ~~~~~~ 136 (233)
++|.++
T Consensus 173 ~~n~l~ 178 (390)
T 3o6n_A 173 SSNRLT 178 (390)
T ss_dssp CSSCCS
T ss_pred CCCcCC
Confidence 555443
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=1e-22 Score=162.10 Aligned_cols=192 Identities=21% Similarity=0.281 Sum_probs=126.4
Q ss_pred CCCccceeecCC---------CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecC
Q 036959 38 LCNWVGVSCGAR---------HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLED 108 (233)
Q Consensus 38 ~~~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 108 (233)
.|.|..+.|... .++++.|++++|.+.+..+..|..+++|++|++++|.+....|..+..+++|++|++++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 466777777632 35789999999999877777899999999999999999877788888999999999999
Q ss_pred CcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcC---------------------------
Q 036959 109 NKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSG--------------------------- 161 (233)
Q Consensus 109 ~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--------------------------- 161 (233)
|.+. ..|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccC
Confidence 8887 4444332 566666666666654434445555555555555554421
Q ss_pred ------------------cCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCC
Q 036959 162 ------------------TLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLR 223 (233)
Q Consensus 162 ------------------~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 223 (233)
.++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|+
T Consensus 189 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ 267 (332)
T ss_dssp SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCC
T ss_pred ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCC
Confidence 111111224455555566666555544445556666666666666665 4555566666666
Q ss_pred EEEecCCcCC
Q 036959 224 DLYTANNHLQ 233 (233)
Q Consensus 224 ~L~l~~n~l~ 233 (233)
.|++++|+++
T Consensus 268 ~L~l~~N~l~ 277 (332)
T 2ft3_A 268 VVYLHTNNIT 277 (332)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 6666666653
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.2e-22 Score=170.87 Aligned_cols=110 Identities=24% Similarity=0.234 Sum_probs=88.0
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 56788888888887777778888888888888888888777777788888888888888888544455678888888888
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCc
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLS 160 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 160 (233)
++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 888888766767777888888888887765
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=9.5e-23 Score=174.17 Aligned_cols=182 Identities=18% Similarity=0.197 Sum_probs=148.0
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
.+++.++++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 56799999999988555556788999999999999998777778999999999999999999777778899999999999
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccC----------------------
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQI---------------------- 188 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---------------------- 188 (233)
++|.+....+..+..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.+.+..
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 9999995555567899999999999999984 44444447888888888888765321
Q ss_pred -------------------------------------CCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCc
Q 036959 189 -------------------------------------PSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNH 231 (233)
Q Consensus 189 -------------------------------------~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 231 (233)
+..+..+++|+.|++++|.+.+..|..|+.+++|+.|++++|.
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 1224556777888888888877777788888888888888877
Q ss_pred CC
Q 036959 232 LQ 233 (233)
Q Consensus 232 l~ 233 (233)
++
T Consensus 290 l~ 291 (597)
T 3oja_B 290 LV 291 (597)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=166.65 Aligned_cols=184 Identities=20% Similarity=0.201 Sum_probs=132.9
Q ss_pred CCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcch--hhcCCCCCc
Q 036959 49 RHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPS--WIGMLSKLQ 126 (233)
Q Consensus 49 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~--~~~~l~~L~ 126 (233)
..++++.|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+. ..|. .+..+++|+
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~ 152 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ 152 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCC
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCc
Confidence 4578999999999998777788889999999999999888655555888889999999998887 3443 567778888
Q ss_pred EEEeeecc-ccccCCccccCCCCCcEEEecCCcCcC-----------------------cCchHHhhcCCCCcEEEeecc
Q 036959 127 ILSLRNNS-FTGPIPWSFYNISSLKWINLGFNSLSG-----------------------TLPNDMCNRLPKLQEIYLHSN 182 (233)
Q Consensus 127 ~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~n 182 (233)
+|++++|. +....+..+..+++|+.|++++|.+.+ .++...+..+++|+.|++++|
T Consensus 153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 88887773 443334445555555555555554432 333334445677788888887
Q ss_pred cccccC-------------------------------CCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCc
Q 036959 183 KLFGQI-------------------------------PSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNH 231 (233)
Q Consensus 183 ~~~~~~-------------------------------~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 231 (233)
.+.+.. |..+..+++|++|++++|.++...+..+..+++|+.|++++|+
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 776432 2234567889999999999985444456889999999999998
Q ss_pred CC
Q 036959 232 LQ 233 (233)
Q Consensus 232 l~ 233 (233)
++
T Consensus 313 ~~ 314 (353)
T 2z80_A 313 WD 314 (353)
T ss_dssp BC
T ss_pred cc
Confidence 74
No 40
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.3e-22 Score=157.17 Aligned_cols=160 Identities=24% Similarity=0.348 Sum_probs=140.5
Q ss_pred CCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEE
Q 036959 49 RHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQIL 128 (233)
Q Consensus 49 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 128 (233)
..++++.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 61 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp GCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 358899999999998753 468899999999999999997777778999999999999999996666678899999999
Q ss_pred EeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcc
Q 036959 129 SLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKF 208 (233)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 208 (233)
++++|.+++..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 99999999666667889999999999999998 56665556899999999999999988777889999999999999988
Q ss_pred cCc
Q 036959 209 TGR 211 (233)
Q Consensus 209 ~~~ 211 (233)
.+.
T Consensus 218 ~~~ 220 (272)
T 3rfs_A 218 DCT 220 (272)
T ss_dssp CCC
T ss_pred ccc
Confidence 754
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=3.5e-23 Score=177.02 Aligned_cols=179 Identities=21% Similarity=0.209 Sum_probs=103.8
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCc-hhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLP-NELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
++++.|++++|.+. .++..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 376 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 376 NSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp SCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 34444444444443 233455555666666666665554444 3455666666666666666555555566666666666
Q ss_pred eeeccccc-cCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcc
Q 036959 130 LRNNSFTG-PIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKF 208 (233)
Q Consensus 130 l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 208 (233)
+++|.+.+ ..|..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh-hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 66666654 2455566666666666666666533232 233566666666666666655566666666666666666666
Q ss_pred cCccchhccCcC-CCCEEEecCCcC
Q 036959 209 TGRLRENIGNLS-KLRDLYTANNHL 232 (233)
Q Consensus 209 ~~~~~~~l~~~~-~L~~L~l~~n~l 232 (233)
+ .+|..+..++ +|+.|++++|++
T Consensus 534 ~-~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 534 E-TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp C-CEESCGGGSCTTCCEEECCSCCC
T ss_pred c-ccCHhHhhhcccCcEEEccCCCc
Confidence 5 3444466654 466666666665
No 42
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.5e-22 Score=150.73 Aligned_cols=177 Identities=25% Similarity=0.326 Sum_probs=147.6
Q ss_pred CCCCccceeecCC---------CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEec
Q 036959 37 PLCNWVGVSCGAR---------HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLE 107 (233)
Q Consensus 37 ~~~~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 107 (233)
-.|.|.++.|... .++++.|+++++.+.+..+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 4578888888742 3578999999999987666778899999999999999986666667889999999999
Q ss_pred CCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccccc
Q 036959 108 DNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQ 187 (233)
Q Consensus 108 ~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 187 (233)
+|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~-- 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD-- 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC--
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee--
Confidence 99998655566788999999999999998666666888999999999999998 566665668899999999999765
Q ss_pred CCCCcccccCCcEEEccCCcccCccchhccCcCC
Q 036959 188 IPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSK 221 (233)
Q Consensus 188 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 221 (233)
+.++.|+.|++..|.+++.+|..++.++.
T Consensus 162 -----~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 -----CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 34678889999999999999988887754
No 43
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=158.66 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=134.5
Q ss_pred ceEeEEEecCCcccccCCCCC--CCCCCccEEEcccCccCCCCc----hhhhccCCccEEEecCCcccCCcchhhcCCCC
Q 036959 51 RRVRVLNLSNIGLQGTIPPYL--GNLSFLVYLNFGQNNLYGHLP----NELGQLHRLKSFGLEDNKFSGSFPSWIGMLSK 124 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~ 124 (233)
++++.|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 459999999999998888887 889999999999999886544 34456899999999999998777778889999
Q ss_pred CcEEEeeecccccc--C--CccccCCCCCcEEEecCCcCcCcCchH---HhhcCCCCcEEEeecccccccCCCCcccc--
Q 036959 125 LQILSLRNNSFTGP--I--PWSFYNISSLKWINLGFNSLSGTLPND---MCNRLPKLQEIYLHSNKLFGQIPSSLSHC-- 195 (233)
Q Consensus 125 L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~~~~~-- 195 (233)
|++|++++|.+.+. + +..+..+++|+.|++++|.++ .++.. ++..+++|++|++++|.+.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 99999999986532 1 223356778888888888886 33332 34467888888888888876666666555
Q ss_pred -cCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 196 -IDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 196 -~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
++|++|++++|.++ .+|..+. ++|+.|++++|+++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 57777888777777 4454443 56666666666653
No 44
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=1.3e-22 Score=173.52 Aligned_cols=182 Identities=20% Similarity=0.196 Sum_probs=89.1
Q ss_pred CceEeEEEecCCcccccC--CCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcch-hhcCCCCCc
Q 036959 50 HRRVRVLNLSNIGLQGTI--PPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPS-WIGMLSKLQ 126 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~-~~~~l~~L~ 126 (233)
.++++.|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 355556666655554332 44455555555555555555444444555555555555555555433222 244455555
Q ss_pred EEEeeeccccccCCccccCCCCCcEEEecCCcCcCc-Cc-hHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEcc
Q 036959 127 ILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGT-LP-NDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMS 204 (233)
Q Consensus 127 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 204 (233)
+|++++|.+.+..|..+..+++|+.|++++|.+.+. ++ ...+..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence 555555555544444445555555555555554321 01 0112244555555555555544444444445555555555
Q ss_pred CCcccCccchhccCcCCCCEEEecCCcC
Q 036959 205 DNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 205 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
+|.+++..|+.+..+++| .|++++|++
T Consensus 509 ~N~l~~~~~~~l~~l~~L-~L~L~~N~l 535 (606)
T 3t6q_A 509 HNRLTSSSIEALSHLKGI-YLNLASNHI 535 (606)
T ss_dssp SSCCCGGGGGGGTTCCSC-EEECCSSCC
T ss_pred CCccCcCChhHhCccccc-EEECcCCcc
Confidence 555544444444444444 444444443
No 45
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=2.1e-23 Score=164.65 Aligned_cols=180 Identities=23% Similarity=0.263 Sum_probs=149.5
Q ss_pred CCCceEeEEEecCCcccccCCCCCCCC-----CCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCC--cchhh-
Q 036959 48 ARHRRVRVLNLSNIGLQGTIPPYLGNL-----SFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGS--FPSWI- 119 (233)
Q Consensus 48 ~~~~~l~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~--~~~~~- 119 (233)
...++++.|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 3458899999999999866 7777766 8999999999999987778999999999999999987633 23334
Q ss_pred -cCCCCCcEEEeeeccccc--cCC-ccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccc
Q 036959 120 -GMLSKLQILSLRNNSFTG--PIP-WSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHC 195 (233)
Q Consensus 120 -~~l~~L~~L~l~~~~~~~--~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 195 (233)
..+++|++|++++|.+++ ..+ ..+..+++|+.|++++|.+.+..+...+..+++|+.|++++|.++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 778999999999999873 112 234577899999999999986554444446789999999999998 6677665
Q ss_pred cCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 196 IDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 196 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
++|++|++++|.+++. |. +..+++|+.|++++|+++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 8999999999999976 55 899999999999999985
No 46
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=1.7e-22 Score=172.82 Aligned_cols=184 Identities=17% Similarity=0.083 Sum_probs=163.8
Q ss_pred CCceEeEEEecCCccccc--CCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcc-hhhcCCCCC
Q 036959 49 RHRRVRVLNLSNIGLQGT--IPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFP-SWIGMLSKL 125 (233)
Q Consensus 49 ~~~~l~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L 125 (233)
..++++.|++++|.+.+. .+..+..+++|++|++++|.+.. +|..+..+++|++|++++|.+.+..+ ..+..+++|
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 458999999999998754 47778899999999999999874 55778899999999999999986666 578899999
Q ss_pred cEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccC
Q 036959 126 QILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSD 205 (233)
Q Consensus 126 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 205 (233)
++|++++|.+.+..|..+..+++|+.|++++|.+.+......+..+++|+.|++++|.+.+..|..+..+++|++|++++
T Consensus 427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 99999999999888889999999999999999998533333444899999999999999988889999999999999999
Q ss_pred CcccCccchhccCcCCCCEEEecCCcCC
Q 036959 206 NKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 206 n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
|.+++..|..+..+++|+.|++++|+++
T Consensus 507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp SCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 9999988999999999999999999985
No 47
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=9.4e-22 Score=150.53 Aligned_cols=160 Identities=23% Similarity=0.300 Sum_probs=144.2
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
+.++.|+++++.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 57999999999999888888999999999999999999888888999999999999999999666677889999999999
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 210 (233)
++|.+++..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 999999666666788999999999999998 6666555689999999999999997777789999999999999999975
Q ss_pred c
Q 036959 211 R 211 (233)
Q Consensus 211 ~ 211 (233)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 4
No 48
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=4.9e-22 Score=169.94 Aligned_cols=180 Identities=23% Similarity=0.207 Sum_probs=95.4
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCch-hhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPN-ELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 4555555555555545555555555555555555555433322 245555555555555555544444555555555555
Q ss_pred eeecccccc---CCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCC
Q 036959 130 LRNNSFTGP---IPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDN 206 (233)
Q Consensus 130 l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 206 (233)
+++|.+.+. .+..+..+++|+.|++++|.+.+..|. .+..+++|+.|++++|.+.+..|..+..++.| .|++++|
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred CCCCCCCccccccchhhccCCCccEEECCCCccCccChh-hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 555555431 123345555555555555555522222 22345555555555555555555555555555 5555555
Q ss_pred cccCccchhccCcCCCCEEEecCCcC
Q 036959 207 KFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 207 ~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
.+++..|..+..+++|+.|++++|++
T Consensus 534 ~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 534 HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred cccccCHhhcccCCCCCEEeCCCCCc
Confidence 55555555555555555555555554
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.1e-21 Score=154.30 Aligned_cols=183 Identities=21% Similarity=0.248 Sum_probs=131.5
Q ss_pred CCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccC---------------------CCCchhhhccCCccEEEec
Q 036959 49 RHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLY---------------------GHLPNELGQLHRLKSFGLE 107 (233)
Q Consensus 49 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~---------------------~~~~~~l~~l~~L~~L~l~ 107 (233)
..++++.|++++|.+.+..|..|..+++|++|++++|.+. ...+..+..+++|++|+++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence 3466777777777777666666777777777777666543 2223345666777777777
Q ss_pred CCcccC--CcchhhcCCCCCcE---------------------EEeeeccccccCCccccCCCCCcEEEecCCcCcCcCc
Q 036959 108 DNKFSG--SFPSWIGMLSKLQI---------------------LSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLP 164 (233)
Q Consensus 108 ~~~i~~--~~~~~~~~l~~L~~---------------------L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 164 (233)
+|.+.. ..+..+..+++|++ |++++|.+.+..+..+..+++|+.|++++|.+. .++
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~ 232 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVD 232 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EEC
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-eeC
Confidence 776642 33444555555554 455555555444566778899999999999998 444
Q ss_pred hHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccC------cCCCCEEEecCCcCC
Q 036959 165 NDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGN------LSKLRDLYTANNHLQ 233 (233)
Q Consensus 165 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~------~~~L~~L~l~~n~l~ 233 (233)
...+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|.. .++++.|++++|+++
T Consensus 233 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 233 NGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred hhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 434458999999999999998 67888899999999999999999877776653 378999999999874
No 50
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=176.79 Aligned_cols=193 Identities=20% Similarity=0.183 Sum_probs=165.3
Q ss_pred CCCccceeecCCCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCC-chhhhccCCccEEEecCCcccCCcc
Q 036959 38 LCNWVGVSCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHL-PNELGQLHRLKSFGLEDNKFSGSFP 116 (233)
Q Consensus 38 ~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~~~i~~~~~ 116 (233)
.+.|..+.. ..++++.|++++|.+.+..+..|..+++|++|++++|.....+ |..|..+++|++|++++|.+....|
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 344555554 4478999999999999888999999999999999999665444 7789999999999999999997778
Q ss_pred hhhcCCCCCcEEEeeeccccccCCcc--ccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCccc
Q 036959 117 SWIGMLSKLQILSLRNNSFTGPIPWS--FYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSH 194 (233)
Q Consensus 117 ~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 194 (233)
..|..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 99999999999999999998766654 8899999999999999985544445558999999999999998888888877
Q ss_pred c--cCCcEEEccCCcccCccchhccCcCC------CCEEEecCCcC
Q 036959 195 C--IDLRRLWMSDNKFTGRLRENIGNLSK------LRDLYTANNHL 232 (233)
Q Consensus 195 ~--~~L~~L~l~~n~~~~~~~~~l~~~~~------L~~L~l~~n~l 232 (233)
+ ++|+.|++++|.+.+..+..++.+++ |+.|++++|.+
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 7 89999999999999888777776665 99999999965
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=6.4e-22 Score=157.42 Aligned_cols=183 Identities=20% Similarity=0.212 Sum_probs=126.3
Q ss_pred CCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccC---------------------CCCchhhhccCCccEEEec
Q 036959 49 RHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLY---------------------GHLPNELGQLHRLKSFGLE 107 (233)
Q Consensus 49 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~---------------------~~~~~~l~~l~~L~~L~l~ 107 (233)
..++++.|++++|.+.+..+..|..+++|++|++++|.+. ...+..+..+++|++|+++
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 3467777888877777666667777777777777777665 2222234445555555555
Q ss_pred CCcccC--CcchhhcCC--------------------CCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCch
Q 036959 108 DNKFSG--SFPSWIGML--------------------SKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPN 165 (233)
Q Consensus 108 ~~~i~~--~~~~~~~~l--------------------~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 165 (233)
+|.+.. ..+..+..+ ++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++.
T Consensus 156 ~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~ 234 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIEN 234 (332)
T ss_dssp SCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-CCCT
T ss_pred CCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-cCCh
Confidence 554431 222222211 23444444444444344456677889999999999998 4554
Q ss_pred HHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccC------cCCCCEEEecCCcCC
Q 036959 166 DMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGN------LSKLRDLYTANNHLQ 233 (233)
Q Consensus 166 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~------~~~L~~L~l~~n~l~ 233 (233)
..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+++..+..|.. .++|+.|++++|+++
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 44558999999999999998 67888999999999999999999877777764 367999999999874
No 52
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=1.2e-22 Score=174.68 Aligned_cols=179 Identities=20% Similarity=0.345 Sum_probs=132.7
Q ss_pred CCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCc-cCC-CCchhhhcc------CCccEEEecCCcccCCcch--h
Q 036959 49 RHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNN-LYG-HLPNELGQL------HRLKSFGLEDNKFSGSFPS--W 118 (233)
Q Consensus 49 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~~~i~~~~~~--~ 118 (233)
..++++.|++++|.+.+.+|..+..+++|++|++++|. +.+ .+|..+..+ ++|++|++++|.+. .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 45789999999999999999999999999999999998 876 788888776 89999999999998 7887 8
Q ss_pred hcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCC-CcEEEeecccccccCCCCccccc-
Q 036959 119 IGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPK-LQEIYLHSNKLFGQIPSSLSHCI- 196 (233)
Q Consensus 119 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~~~- 196 (233)
+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.+. .+|..+. .+++ |++|++++|.+. .+|..+...+
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l 401 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLK-YIPNIFDAKSV 401 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCc-ccchhhhhccc
Confidence 8899999999999999887777 6666777777777777766 6665543 5555 667776666665 4555444433
Q ss_pred -CCcEEEccCCcccCccchhcc-------CcCCCCEEEecCCcC
Q 036959 197 -DLRRLWMSDNKFTGRLRENIG-------NLSKLRDLYTANNHL 232 (233)
Q Consensus 197 -~L~~L~l~~n~~~~~~~~~l~-------~~~~L~~L~l~~n~l 232 (233)
+|+.|++++|.+++..|..+. .+++|+.|++++|++
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l 445 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence 555555555555555444444 444555555555544
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=1.8e-21 Score=168.55 Aligned_cols=182 Identities=21% Similarity=0.266 Sum_probs=110.0
Q ss_pred CceEeEEEecCCcccccCC-CCCCCCCCccEEEcccCccCC--------------------------CCchhhhccCCcc
Q 036959 50 HRRVRVLNLSNIGLQGTIP-PYLGNLSFLVYLNFGQNNLYG--------------------------HLPNELGQLHRLK 102 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~~~~--------------------------~~~~~l~~l~~L~ 102 (233)
.++++.|++++|.+.+.++ ..+..+++|++|++++|.+.. ..|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 3566777777776654433 455556666666666655443 3444555566666
Q ss_pred EEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCC--------ccccCCCCCcEEEecCCcCcCcCchHHhhcCCCC
Q 036959 103 SFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIP--------WSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL 174 (233)
Q Consensus 103 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 174 (233)
.|++++|.+....+..|..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+. .+|...+..+++|
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L 562 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFEL 562 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCc
Confidence 66666666664444455566666666666666553211 12455666666666666665 5555545566677
Q ss_pred cEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhcc-CcCCCCEEEecCCcC
Q 036959 175 QEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIG-NLSKLRDLYTANNHL 232 (233)
Q Consensus 175 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~l 232 (233)
+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|+.|++++|++
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence 7777777766655555556667777777777776666666565 566777777777765
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=171.42 Aligned_cols=181 Identities=19% Similarity=0.206 Sum_probs=122.9
Q ss_pred ceEeEEEecCCcccccC--CCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcc-hhhcCCCCCcE
Q 036959 51 RRVRVLNLSNIGLQGTI--PPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFP-SWIGMLSKLQI 127 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~ 127 (233)
++++.|++++|.+.+.. +..+..+++|++|++++|.+... +..+..+++|++|++++|.+.+..+ ..+..+++|++
T Consensus 347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 45555555555554221 33445555666666666655432 2235566666666666666654333 34566777777
Q ss_pred EEeeeccccccCCccccCCCCCcEEEecCCcCc-CcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCC
Q 036959 128 LSLRNNSFTGPIPWSFYNISSLKWINLGFNSLS-GTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDN 206 (233)
Q Consensus 128 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 206 (233)
|++++|.+.+..+..+..+++|+.|++++|.+. +.+|..+ ..+++|+.|++++|.+.+..|..+..+++|++|++++|
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh-hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 777777777666667777778888888887775 2455433 36788888888888888777778888888888888888
Q ss_pred cccCccchhccCcCCCCEEEecCCcCC
Q 036959 207 KFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 207 ~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
.+++..+..+..+++|+.|++++|+++
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCCCHHHhhcccCCcEEEecCCccc
Confidence 888777777888888888888888764
No 55
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=164.89 Aligned_cols=158 Identities=22% Similarity=0.283 Sum_probs=132.6
Q ss_pred CCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccC--CcchhhcCCCCCcEEEeeeccccccCCc-cccCCCC
Q 036959 72 GNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSG--SFPSWIGMLSKLQILSLRNNSFTGPIPW-SFYNISS 148 (233)
Q Consensus 72 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~ 148 (233)
..+++|++|++++|.+.+..|..+..+++|++|++++|++.+ ..|..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 577889999999999988788888999999999999999884 3456688899999999999999864555 4778889
Q ss_pred CcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEec
Q 036959 149 LKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTA 228 (233)
Q Consensus 149 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 228 (233)
|+.|++++|.+.+..+..+ .++|+.|++++|.+. .+|..+..+++|++|++++|.++...+..+..+++|+.|+++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l---~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp CCEEECCSSCCCGGGGGSC---CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCcchhhhh---cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECc
Confidence 9999999999875554432 168999999999998 678777799999999999999995444458999999999999
Q ss_pred CCcCC
Q 036959 229 NNHLQ 233 (233)
Q Consensus 229 ~n~l~ 233 (233)
+|+++
T Consensus 477 ~N~~~ 481 (520)
T 2z7x_B 477 TNPWD 481 (520)
T ss_dssp SSCBC
T ss_pred CCCCc
Confidence 99974
No 56
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.7e-21 Score=152.27 Aligned_cols=169 Identities=22% Similarity=0.316 Sum_probs=136.5
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
.++++.|++++|.+.+..+ +..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.. .+. +..+++|++|+
T Consensus 62 l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLY 135 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEE
Confidence 4788999999998874433 8888999999999998874 33 58888999999999998884 443 78889999999
Q ss_pred eeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 130 LRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
+++|.+.+. +. +..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 136 l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 136 LDLNQITNI-SP-LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CCSSCCCCC-GG-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred CCCCccCcC-cc-ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC
Confidence 999988743 32 778889999999999887 4544 4478999999999999875433 778899999999999998
Q ss_pred CccchhccCcCCCCEEEecCCcCC
Q 036959 210 GRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 210 ~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+.. .+..+++|+.|++++|+++
T Consensus 209 ~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 209 DVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp BCG--GGTTCTTCCEEEEEEEEEE
T ss_pred ccc--cccCCCCCCEEEccCCeee
Confidence 654 3888999999999998863
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=4.8e-22 Score=165.81 Aligned_cols=109 Identities=13% Similarity=0.154 Sum_probs=54.1
Q ss_pred CCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccccc---------------
Q 036959 123 SKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQ--------------- 187 (233)
Q Consensus 123 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--------------- 187 (233)
++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+...+++|+.|++++|.+.+.
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECC
Confidence 45555555555555444445555555555666555555333333333445555555555544432
Q ss_pred ------CCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 188 ------IPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 188 ------~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
+|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++
T Consensus 200 ~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 200 SNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp SSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred CCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 22224444555555555555542 344455555555555555544
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=3.5e-21 Score=166.75 Aligned_cols=183 Identities=20% Similarity=0.200 Sum_probs=125.5
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCc-hhhhccCCccEEEecCCcccCCcchh-----------
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLP-NELGQLHRLKSFGLEDNKFSGSFPSW----------- 118 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~----------- 118 (233)
++++.|++++|.+.+..+..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++|.+....+..
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~ 460 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence 579999999999998888999999999999999999876554 67888889999999888765443333
Q ss_pred ---------------hcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcC-------chHHhhcCCCCcE
Q 036959 119 ---------------IGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTL-------PNDMCNRLPKLQE 176 (233)
Q Consensus 119 ---------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~~~L~~ 176 (233)
+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.. +...+..+++|+.
T Consensus 461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~ 540 (680)
T 1ziw_A 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHI 540 (680)
T ss_dssp CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCE
T ss_pred hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCE
Confidence 444555555555555555444444555666666666666554210 1111235566666
Q ss_pred EEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 177 IYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 177 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
|++++|.+....+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|+++
T Consensus 541 L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 541 LNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 666666666443445667777777777777777666666677777777777777664
No 59
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=2.1e-21 Score=145.72 Aligned_cols=152 Identities=23% Similarity=0.284 Sum_probs=106.9
Q ss_pred eEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeec
Q 036959 54 RVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNN 133 (233)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 133 (233)
+.++++++.+. .+|..+. ++++.|++++|.+....+..|..+++|++|++++|.+....|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 35666677776 5565443 57888888888887655566777888888888888877666677777778888888887
Q ss_pred cccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 134 SFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 134 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
.++...+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 777444445667777777777777776 343334446777777777777777665666677777777777777665
No 60
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=1.1e-20 Score=142.71 Aligned_cols=166 Identities=20% Similarity=0.230 Sum_probs=110.0
Q ss_pred hcCCCCCCCCCCCccceeecCCCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEec
Q 036959 28 LANNWSISYPLCNWVGVSCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLE 107 (233)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 107 (233)
... |......|.|.++.|.. +.+. .+|..+. ++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 9 ~~~-~~~~~~~Cs~~~v~c~~------------~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 72 (229)
T 3e6j_A 9 HSA-ACPSQCSCSGTTVDCRS------------KRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLG 72 (229)
T ss_dssp --C-CCCTTCEEETTEEECTT------------SCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred hhc-cCCCCCEEeCCEeEccC------------CCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECC
Confidence 344 77788899999988863 2232 3443332 567777777777776666667777777777777
Q ss_pred CCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccccc
Q 036959 108 DNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQ 187 (233)
Q Consensus 108 ~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 187 (233)
+|.+....+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+.+.
T Consensus 73 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 73 SNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCC
T ss_pred CCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCcc
Confidence 77776444455666777777777777776544555666777777777777776 6665553 677777777777777655
Q ss_pred CCCCcccccCCcEEEccCCcccCc
Q 036959 188 IPSSLSHCIDLRRLWMSDNKFTGR 211 (233)
Q Consensus 188 ~~~~~~~~~~L~~L~l~~n~~~~~ 211 (233)
.+..+..+++|+.|++++|.+...
T Consensus 151 ~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCCccCC
Confidence 555666677777777777776543
No 61
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.6e-21 Score=148.19 Aligned_cols=176 Identities=22% Similarity=0.211 Sum_probs=150.4
Q ss_pred CCceEeEEEecCCc-ccccCCCCCCCCCCccEEEccc-CccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCc
Q 036959 49 RHRRVRVLNLSNIG-LQGTIPPYLGNLSFLVYLNFGQ-NNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQ 126 (233)
Q Consensus 49 ~~~~l~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 126 (233)
..++++.|++++|. +....+..|..+++|++|++++ |.+....+..|..+++|++|++++|.+. ..|. +..+++|+
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~-~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-LTKVYSTD 130 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCC-SCCC-CTTCCBCC
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCc-cccc-cccccccc
Confidence 45889999999997 8766667899999999999998 9998666677899999999999999998 4665 77888888
Q ss_pred ---EEEeeec-cccccCCccccCCCCCc-EEEecCCcCcCcCchHHhhcCCCCcEEEeeccc-ccccCCCCcccc-cCCc
Q 036959 127 ---ILSLRNN-SFTGPIPWSFYNISSLK-WINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNK-LFGQIPSSLSHC-IDLR 199 (233)
Q Consensus 127 ---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~-~~L~ 199 (233)
+|++++| .+....+..+..+++|+ .+++++|.+. .++...+.. ++|+.|++++|+ +.+..+..+..+ ++|+
T Consensus 131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~ 208 (239)
T 2xwt_C 131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208 (239)
T ss_dssp SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCS
T ss_pred cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCc
Confidence 9999999 88866666788999999 9999999998 788777644 899999999995 887767788889 9999
Q ss_pred EEEccCCcccCccchhccCcCCCCEEEecCCc
Q 036959 200 RLWMSDNKFTGRLRENIGNLSKLRDLYTANNH 231 (233)
Q Consensus 200 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 231 (233)
.|++++|.+++..+. .+++|+.|+++++.
T Consensus 209 ~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 209 LLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp EEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred EEECCCCccccCChh---HhccCceeeccCcc
Confidence 999999999854433 67899999998864
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1e-20 Score=148.95 Aligned_cols=169 Identities=21% Similarity=0.311 Sum_probs=144.8
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
+++++.|+++++.+.. ++ .+..+++|++|++++|.+.. ++. +..+++|++|++++|.+.. .+ .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 4789999999999873 44 58889999999999999984 444 8999999999999999984 44 578899999999
Q ss_pred eeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 130 LRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
+++|.+.+ ++ .+..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 114 l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 114 LTSTQITD-VT-PLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp CTTSCCCC-CG-GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCC-ch-hhcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 99999984 34 3888999999999999998 4544 4489999999999999985433 888999999999999998
Q ss_pred CccchhccCcCCCCEEEecCCcCC
Q 036959 210 GRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 210 ~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+..+ +..+++|+.|++++|+++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCC
T ss_pred cChh--hcCCCCCCEEEccCCccC
Confidence 6544 889999999999999874
No 63
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=4.3e-21 Score=162.87 Aligned_cols=157 Identities=24% Similarity=0.310 Sum_probs=132.3
Q ss_pred CCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCC--cchhhcCCCCCcEEEeeeccccccCCc-cccCCCC
Q 036959 72 GNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGS--FPSWIGMLSKLQILSLRNNSFTGPIPW-SFYNISS 148 (233)
Q Consensus 72 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~ 148 (233)
..+++|++|++++|.+.+..|..+..+++|++|++++|++.+. .|..+..+++|++|++++|.+.+.+|. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 6778899999999999887888899999999999999998842 245678899999999999999874554 4778899
Q ss_pred CcEEEecCCcCcCcCchHHhhcC-CCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEe
Q 036959 149 LKWINLGFNSLSGTLPNDMCNRL-PKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYT 227 (233)
Q Consensus 149 L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 227 (233)
|+.|++++|.+.+..+. .+ ++|+.|++++|.++ .+|..+..+++|++|++++|.++...+..+..+++|+.|++
T Consensus 430 L~~L~l~~n~l~~~~~~----~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFR----CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp CCEEECCSSCCCGGGGS----SCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEEC
T ss_pred CCEEECCCCCCCcchhh----hhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEe
Confidence 99999999999754443 33 69999999999998 56776679999999999999999544445899999999999
Q ss_pred cCCcCC
Q 036959 228 ANNHLQ 233 (233)
Q Consensus 228 ~~n~l~ 233 (233)
++|+++
T Consensus 505 ~~N~~~ 510 (562)
T 3a79_B 505 HDNPWD 510 (562)
T ss_dssp CSCCBC
T ss_pred cCCCcC
Confidence 999974
No 64
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=9.2e-22 Score=173.20 Aligned_cols=178 Identities=21% Similarity=0.246 Sum_probs=146.8
Q ss_pred CCceEeEEEecCCcccc-----------------cCCCCCC--CCCCccEEEcccCccCCCCchhhhccCCccEEEecCC
Q 036959 49 RHRRVRVLNLSNIGLQG-----------------TIPPYLG--NLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDN 109 (233)
Q Consensus 49 ~~~~l~~L~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~ 109 (233)
..++++.|++++|.+.+ .+|..+. .+++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 45789999999999987 3888877 9999999999999998899999999999999999999
Q ss_pred c-ccC-CcchhhcCC-------CCCcEEEeeeccccccCCc--cccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEE
Q 036959 110 K-FSG-SFPSWIGML-------SKLQILSLRNNSFTGPIPW--SFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIY 178 (233)
Q Consensus 110 ~-i~~-~~~~~~~~l-------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 178 (233)
+ +++ ..|..+..+ ++|++|++++|.+. .+|. .+..+++|+.|++++|.+. .+| . +..+++|+.|+
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~~~L~~L~~L~ 601 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A-FGTNVKLTDLK 601 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-CCTTSEESEEE
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h-hcCCCcceEEE
Confidence 8 775 567655544 49999999999998 7887 7888999999999999987 777 3 34788889999
Q ss_pred eecccccccCCCCcccccC-CcEEEccCCcccCccchhccCcC--CCCEEEecCCcC
Q 036959 179 LHSNKLFGQIPSSLSHCID-LRRLWMSDNKFTGRLRENIGNLS--KLRDLYTANNHL 232 (233)
Q Consensus 179 l~~n~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l 232 (233)
+++|.+. .+|..+..+++ |+.|++++|.++ .+|..+...+ +|+.|++++|++
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcC
Confidence 9998887 77777888888 888888888887 5666666553 377777777765
No 65
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=6.9e-21 Score=152.22 Aligned_cols=170 Identities=24% Similarity=0.380 Sum_probs=103.8
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|++++|.+.+..+ +..+++|+.+++++|.+....+ +..+++|++|++++|.+.. .+. +..+++|++|++
T Consensus 177 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l 250 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEI 250 (347)
T ss_dssp TTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEEC
Confidence 444555555554442211 4445555555555555542222 5566667777777776663 333 566677777777
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 210 (233)
++|.++.. ..+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 251 ~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 251 GTNQISDI--NAVKDLTKLKMLNVGSNQIS-DIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCccCCC--hhHhcCCCcCEEEccCCccC-CCh--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 77766532 34566677777777777776 332 23367777777777777766666667777777777777777776
Q ss_pred ccchhccCcCCCCEEEecCCcCC
Q 036959 211 RLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 211 ~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
..| +..+++|+.|++++|+|+
T Consensus 326 ~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 326 IRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CGG--GGGCTTCSEESSSCC---
T ss_pred ccC--hhhhhccceeehhhhccc
Confidence 554 677777777777777764
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=1.1e-21 Score=155.04 Aligned_cols=178 Identities=21% Similarity=0.207 Sum_probs=105.2
Q ss_pred CCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCch----------------hhhccCCccEEEecCCccc
Q 036959 49 RHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPN----------------ELGQLHRLKSFGLEDNKFS 112 (233)
Q Consensus 49 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----------------~l~~l~~L~~L~l~~~~i~ 112 (233)
..++++.|++++|.+.+..+ +..+++|++|++++|.+.+..+. ....+++|++|++++|.+.
T Consensus 56 ~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 56 PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133 (317)
T ss_dssp TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC
T ss_pred CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC
Confidence 45678888888887765443 67777788888777766421100 0012334555555555555
Q ss_pred CCcchhhcCCCCCcEEEeeeccccccCCccc-cCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCC
Q 036959 113 GSFPSWIGMLSKLQILSLRNNSFTGPIPWSF-YNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSS 191 (233)
Q Consensus 113 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 191 (233)
...+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+. .++... .+++|++|++++|.+.+. |..
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~--~l~~L~~L~Ls~N~l~~l-~~~ 209 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSNKLAFM-GPE 209 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCC--CCTTCCEEECCSSCCCEE-CGG
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cccccc--ccccCCEEECCCCcCCcc-hhh
Confidence 3333345555566666666665554333333 24556666666666655 333222 356677777777766643 334
Q ss_pred cccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 192 LSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 192 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+..+++|+.|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 210 ~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp GGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred hcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 666777777777777776 45666777777777777777763
No 67
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=2.4e-21 Score=155.87 Aligned_cols=175 Identities=22% Similarity=0.253 Sum_probs=140.4
Q ss_pred eEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhh-ccCCccEEEecCCcccCCcchhhcCCCCCcEEEeee
Q 036959 54 RVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELG-QLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRN 132 (233)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 132 (233)
+.++++++.+. .+|..+. ..++.|++++|.+....+..+. .+++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46788888887 5665553 4588999999998866666676 889999999999999866667788899999999999
Q ss_pred ccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCc---ccccCCcEEEccCCccc
Q 036959 133 NSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSL---SHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 133 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~---~~~~~L~~L~l~~n~~~ 209 (233)
|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.|+|++|.+....+..+ ..+++|+.|+|++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9998666667888999999999999998 5544455588999999999999885444444 56889999999999999
Q ss_pred CccchhccCcCC--CCEEEecCCcC
Q 036959 210 GRLRENIGNLSK--LRDLYTANNHL 232 (233)
Q Consensus 210 ~~~~~~l~~~~~--L~~L~l~~n~l 232 (233)
+..+..+..++. ++.|++++|++
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred ccCHHHhhhccHhhcceEEecCCCc
Confidence 777778888876 48899999986
No 68
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.85 E-value=1.9e-20 Score=146.36 Aligned_cols=168 Identities=23% Similarity=0.325 Sum_probs=141.9
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
.++++.|+++++.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+. ..+ .+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCC-CCh-hhccCCCCCEEE
Confidence 4789999999999874 33 488899999999999999854 43 889999999999999998 344 478899999999
Q ss_pred eeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 130 LRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
+++|.+.+ + ..+..+++|+.|++++|.+. .+ .. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 119 L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~-~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 119 LEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CTTSCCCC-C-GGGGGCTTCCEEECCSSCCC-CC-GG-GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCC-C-hhhcCCCCCCEEEccCCcCC-cc-hh-hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 99999884 3 46778999999999999998 44 33 3489999999999999986544 888999999999999998
Q ss_pred CccchhccCcCCCCEEEecCCcC
Q 036959 210 GRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 210 ~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
+. + .+..+++|+.|++++|++
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEE
T ss_pred CC-h-hhccCCCCCEEECcCCcc
Confidence 54 4 488999999999999976
No 69
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.1e-20 Score=140.60 Aligned_cols=169 Identities=21% Similarity=0.293 Sum_probs=137.8
Q ss_pred EeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeee
Q 036959 53 VRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRN 132 (233)
Q Consensus 53 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 132 (233)
.+.++.+++.+. .+|..+ .+++++|++++|.+....+..+..+++|++|++++|++....+..|..+++|++|++++
T Consensus 9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 357788888876 555444 46899999999999866666788999999999999999866556678899999999999
Q ss_pred ccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCcc
Q 036959 133 NSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRL 212 (233)
Q Consensus 133 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 212 (233)
|.+++..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--
Confidence 9998666666788999999999999998 6666655688999999999999987766678889999999999998764
Q ss_pred chhccCcCCCCEEEecCCcC
Q 036959 213 RENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 213 ~~~l~~~~~L~~L~l~~n~l 232 (233)
.+++|+.|+++.|.+
T Consensus 163 -----~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 163 -----TCPGIRYLSEWINKH 177 (208)
T ss_dssp -----CTTTTHHHHHHHHHC
T ss_pred -----CCCCHHHHHHHHHhC
Confidence 345666666666654
No 70
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=141.51 Aligned_cols=154 Identities=19% Similarity=0.215 Sum_probs=115.5
Q ss_pred eEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCc-hhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeee
Q 036959 54 RVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLP-NELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRN 132 (233)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 132 (233)
+.++++++.+. .+|..+. ..+++|++++|.+....+ ..|..+++|++|++++|.+....+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46788888887 5665553 456888999988875533 4477888888888888888865556778888888888888
Q ss_pred ccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCc
Q 036959 133 NSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGR 211 (233)
Q Consensus 133 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 211 (233)
|.+++..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCC-eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 8887666666777888888888888887 34333344778888888888888777777778888888888888877643
No 71
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=159.09 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=64.8
Q ss_pred CCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccC-CcchhhcCCCCCcE
Q 036959 49 RHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSG-SFPSWIGMLSKLQI 127 (233)
Q Consensus 49 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~ 127 (233)
..++++.|++++|.+.+..|..|..+++|++|++++|.+. .+|.. .+++|++|++++|.+.+ ..|..+..+++|++
T Consensus 43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~ 119 (520)
T 2z7x_B 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119 (520)
T ss_dssp TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence 4577888888888887666777888888888888888776 45544 77888888888888874 35677788888888
Q ss_pred EEeeecccc
Q 036959 128 LSLRNNSFT 136 (233)
Q Consensus 128 L~l~~~~~~ 136 (233)
|++++|.+.
T Consensus 120 L~L~~n~l~ 128 (520)
T 2z7x_B 120 LGLSTTHLE 128 (520)
T ss_dssp EEEEESSCC
T ss_pred EEecCcccc
Confidence 888877664
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=7.8e-21 Score=161.27 Aligned_cols=179 Identities=20% Similarity=0.150 Sum_probs=156.5
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
+.++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57999999999999777888999999999999999998777788999999999999999998666688999999999999
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcC-cCchHHhhcCCCCcEEEeecccccccCCCCcccccCC----cEEEccC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSG-TLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDL----RRLWMSD 205 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L~l~~ 205 (233)
++|.+....+..+..+++|+.|++++|.+.+ .+|..+. .+++|+.|++++|.+.+..+..++.+++| +.|++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 9999985555568899999999999999874 3566554 89999999999999988777888888888 8999999
Q ss_pred CcccCccchhccCcCCCCEEEecCCc
Q 036959 206 NKFTGRLRENIGNLSKLRDLYTANNH 231 (233)
Q Consensus 206 n~~~~~~~~~l~~~~~L~~L~l~~n~ 231 (233)
|.+.+..+..+... +|+.|++++|.
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~n~ 211 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRNNF 211 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCC
T ss_pred CCceecCHHHhccC-cceeEeccccc
Confidence 99998888777766 79999998873
No 73
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=166.12 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=53.3
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchh--hhccCCccEEEecCCcccCCcc-hhhcCCCCCc
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNE--LGQLHRLKSFGLEDNKFSGSFP-SWIGMLSKLQ 126 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~ 126 (233)
.++++.|++++|.+.+..|..|..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+ ..|..+++|+
T Consensus 72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 356666666666666556666666666666666666665544433 5666666666666666654332 3456666666
Q ss_pred EEEeeecccc
Q 036959 127 ILSLRNNSFT 136 (233)
Q Consensus 127 ~L~l~~~~~~ 136 (233)
+|++++|.++
T Consensus 152 ~L~Ls~N~i~ 161 (844)
T 3j0a_A 152 SIDFSSNQIF 161 (844)
T ss_dssp EEEEESSCCC
T ss_pred EEECCCCcCC
Confidence 6666666554
No 74
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.84 E-value=3.3e-20 Score=136.84 Aligned_cols=153 Identities=20% Similarity=0.316 Sum_probs=121.0
Q ss_pred CCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcE
Q 036959 72 GNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKW 151 (233)
Q Consensus 72 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 151 (233)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.+. .. ..+..+++|++|++++|.+++..+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 55677888888888887 455 5788888999999988765 33 36778889999999999888767778888899999
Q ss_pred EEecCCcCcCcCchHHhhcCCCCcEEEeeccc-ccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCC
Q 036959 152 INLGFNSLSGTLPNDMCNRLPKLQEIYLHSNK-LFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230 (233)
Q Consensus 152 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 230 (233)
|++++|.+.+..+..+. .+++|++|++++|. +. .++ .+..+++|++|++++|.+++. + .+..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCc
Confidence 99999998754555444 78999999999998 54 444 578889999999999998853 3 7888999999999999
Q ss_pred cCC
Q 036959 231 HLQ 233 (233)
Q Consensus 231 ~l~ 233 (233)
+|.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 874
No 75
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=8e-21 Score=162.81 Aligned_cols=181 Identities=18% Similarity=0.095 Sum_probs=137.7
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
+.++.|+|++|.+++..+..|..+++|++|++++|.+....+.+|..+++|++|++++|++....+..|..+++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46888999999888666778888999999999999888666777888999999999999888555567888899999999
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCC----cEEEccCC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDL----RRLWMSDN 206 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L~l~~n 206 (233)
++|.+++..+..+.++++|+.|++++|.+.+......+..+++|++|++++|.+.+..+..+..+..+ ..++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 99988865556688888999999999888632222334478889999999998887767666555443 46788888
Q ss_pred cccCccchhccCcCCCCEEEecCCcC
Q 036959 207 KFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 207 ~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
.+....+..+. ...++.+++.+|..
T Consensus 212 ~l~~i~~~~~~-~~~~~~l~l~~n~~ 236 (635)
T 4g8a_A 212 PMNFIQPGAFK-EIRLHKLTLRNNFD 236 (635)
T ss_dssp CCCEECTTTTT-TCEEEEEEEESCCS
T ss_pred cccccCccccc-chhhhhhhhhcccc
Confidence 88754444433 34567778777643
No 76
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=3.4e-20 Score=139.98 Aligned_cols=152 Identities=22% Similarity=0.323 Sum_probs=132.4
Q ss_pred ccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecC
Q 036959 77 LVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGF 156 (233)
Q Consensus 77 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 156 (233)
-+.++.+++.+. .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 456788887776 555433 38899999999999977788899999999999999999855556778999999999999
Q ss_pred CcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 157 NSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
|.++ .++...+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9998 677666668999999999999998 67888899999999999999999877788999999999999999974
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=4.8e-21 Score=151.47 Aligned_cols=179 Identities=20% Similarity=0.182 Sum_probs=140.4
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcch------------
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPS------------ 117 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~------------ 117 (233)
.++++.|++++|.+.+..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+.
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~ 110 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCc
Confidence 3689999999999987766788899999999999998875443 77888888888888876521100
Q ss_pred ----hhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcc
Q 036959 118 ----WIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLS 193 (233)
Q Consensus 118 ----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 193 (233)
....+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+...+++|++|++++|.+++. +. ..
T Consensus 111 l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~ 188 (317)
T 3o53_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QV 188 (317)
T ss_dssp CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CC
T ss_pred cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-cc
Confidence 0123567899999999998766767888899999999999998544555555789999999999998755 32 23
Q ss_pred cccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 194 HCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 194 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
.+++|++|++++|.+++. +..+..+++|+.|++++|+++
T Consensus 189 ~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC
T ss_pred ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc
Confidence 488999999999999854 445888999999999999874
No 78
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=2.6e-20 Score=158.07 Aligned_cols=106 Identities=21% Similarity=0.261 Sum_probs=67.4
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+. .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 56777777777777555566777777777777777776656666777777777777777666 44443 4566666666
Q ss_pred eeccccc-cCCccccCCCCCcEEEecCCcC
Q 036959 131 RNNSFTG-PIPWSFYNISSLKWINLGFNSL 159 (233)
Q Consensus 131 ~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~ 159 (233)
++|.+.+ ..|..+..+++|+.|++++|.+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCcc
Confidence 6666553 2234555555555555555544
No 79
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.84 E-value=1.6e-20 Score=160.97 Aligned_cols=174 Identities=20% Similarity=0.166 Sum_probs=146.7
Q ss_pred EEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccc
Q 036959 56 LNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSF 135 (233)
Q Consensus 56 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~ 135 (233)
.+-++.+++ .+|..+. .++++|++++|.++...+..|..+++|++|++++|+++...+..|..+++|++|++++|++
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 455555666 6776654 4799999999999977778899999999999999999966677899999999999999999
Q ss_pred cccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccccc-CCCCcccccCCcEEEccCCcccCccch
Q 036959 136 TGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQ-IPSSLSHCIDLRRLWMSDNKFTGRLRE 214 (233)
Q Consensus 136 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~ 214 (233)
.+..+..|.++++|+.|++++|.+. .++...+..+++|++|++++|.+... .|..++.++.|++|++++|.+++..+.
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 8666677899999999999999998 66666566899999999999998753 577888999999999999999988888
Q ss_pred hccCcCCC----CEEEecCCcCC
Q 036959 215 NIGNLSKL----RDLYTANNHLQ 233 (233)
Q Consensus 215 ~l~~~~~L----~~L~l~~n~l~ 233 (233)
.+..++++ ..++++.|+++
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCC
T ss_pred cccchhhhhhhhhhhhcccCccc
Confidence 87766544 46888888763
No 80
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=9.4e-20 Score=145.65 Aligned_cols=170 Identities=25% Similarity=0.416 Sum_probs=120.1
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|+++++.+.+..+ +..+++|+.|++++|.+.. .+. +..+++|+.|++++|.+... +. +..+++|++|++
T Consensus 155 ~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~~~~L~~L~l 228 (347)
T 4fmz_A 155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDI-TP-VANMTRLNSLKI 228 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEEC
T ss_pred CCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCC-ch-hhcCCcCCEEEc
Confidence 444555555554442222 4555566666666665542 222 55666666666666666532 22 667788888888
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 210 (233)
++|.+... +. +..+++|+.|++++|.+. .++ . +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++
T Consensus 229 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 229 GNNKITDL-SP-LANLSQLTWLEIGTNQIS-DIN-A-VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp CSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCG
T ss_pred cCCccCCC-cc-hhcCCCCCEEECCCCccC-CCh-h-HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCC
Confidence 88887743 33 777888999999998887 443 2 34788999999999988754 457788999999999999998
Q ss_pred ccchhccCcCCCCEEEecCCcCC
Q 036959 211 RLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 211 ~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
..+..+..+++|+.|++++|+++
T Consensus 302 ~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 302 EDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp GGHHHHHTCTTCSEEECCSSSCC
T ss_pred cChhHhhccccCCEEEccCCccc
Confidence 88899999999999999999875
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=2.8e-21 Score=152.37 Aligned_cols=179 Identities=21% Similarity=0.157 Sum_probs=144.5
Q ss_pred CCCceEeEEEecCCcccccCC----CCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCC--cc--hhh
Q 036959 48 ARHRRVRVLNLSNIGLQGTIP----PYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGS--FP--SWI 119 (233)
Q Consensus 48 ~~~~~l~~L~l~~~~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~--~~--~~~ 119 (233)
...++++.|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|++.+. .+ ..+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 345889999999999986444 2345689999999999999877788899999999999999987521 21 223
Q ss_pred cCCCCCcEEEeeeccccccCCc----cccCCCCCcEEEecCCcCcCcCchHHhhcC---CCCcEEEeecccccccCCCCc
Q 036959 120 GMLSKLQILSLRNNSFTGPIPW----SFYNISSLKWINLGFNSLSGTLPNDMCNRL---PKLQEIYLHSNKLFGQIPSSL 192 (233)
Q Consensus 120 ~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~n~~~~~~~~~~ 192 (233)
..+++|++|++++|.++ .++. .+..+++|+.|++++|.+.+..|..+. .+ ++|++|++++|.++ .+|..+
T Consensus 194 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~ 270 (310)
T 4glp_A 194 HKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGL 270 (310)
T ss_dssp TSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCC
T ss_pred hcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhh
Confidence 57899999999999986 3333 246789999999999999865565554 33 79999999999998 567665
Q ss_pred ccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 193 SHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 193 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
. ++|++|++++|.+++. |. +..+++|+.|++++|+|+
T Consensus 271 ~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 271 P--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp C--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred c--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 4 8999999999999964 33 678899999999999985
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.1e-20 Score=157.57 Aligned_cols=149 Identities=18% Similarity=0.164 Sum_probs=114.3
Q ss_pred CCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhc-CCCCCcEEEeeeccccccCCccccCCCCCcEEE
Q 036959 75 SFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIG-MLSKLQILSLRNNSFTGPIPWSFYNISSLKWIN 153 (233)
Q Consensus 75 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 153 (233)
++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|++|++++|.+++. + ....+++|+.|+
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~ 197 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLD 197 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEE
Confidence 3445555555555555555677778888888888888765666654 678888888888887744 2 233578999999
Q ss_pred ecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc-CccchhccCcCCCCEEEec
Q 036959 154 LGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT-GRLRENIGNLSKLRDLYTA 228 (233)
Q Consensus 154 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~ 228 (233)
+++|.+. .++..+. .+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.+++.
T Consensus 198 Ls~N~l~-~~~~~~~-~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 198 LSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCSSCCC-EECGGGG-GGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCC-CCCHhHc-CCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999998 5665544 88999999999999985 6777889999999999999987 6678888888888877765
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=1.8e-21 Score=154.90 Aligned_cols=179 Identities=21% Similarity=0.227 Sum_probs=83.6
Q ss_pred ceEeEEEecCCccccc-CCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCC-cccC-CcchhhcCCCCCcE
Q 036959 51 RRVRVLNLSNIGLQGT-IPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDN-KFSG-SFPSWIGMLSKLQI 127 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~-~i~~-~~~~~~~~l~~L~~ 127 (233)
++++.|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .++. ..+..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 4444445544444322 3333444445555555555444334444444555555555554 3332 12333444455555
Q ss_pred EEeeec-ccccc-CCccccCCC-CCcEEEecCCc--Cc-CcCchHHhhcCCCCcEEEeeccc-ccccCCCCcccccCCcE
Q 036959 128 LSLRNN-SFTGP-IPWSFYNIS-SLKWINLGFNS--LS-GTLPNDMCNRLPKLQEIYLHSNK-LFGQIPSSLSHCIDLRR 200 (233)
Q Consensus 128 L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~ 200 (233)
|++++| .+++. ++..+..++ +|+.|++++|. +. +.++. ....+++|+.|++++|. +++..+..+..+++|+.
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 251 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQH 251 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCE
Confidence 555555 44422 233344455 55555555552 22 11222 22245555555555555 44344445555566666
Q ss_pred EEccCCc-ccCccchhccCcCCCCEEEecCC
Q 036959 201 LWMSDNK-FTGRLRENIGNLSKLRDLYTANN 230 (233)
Q Consensus 201 L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n 230 (233)
|++++|. +.......++.+++|+.|++++|
T Consensus 252 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 252 LSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp EECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 6666552 32222234555566666666555
No 84
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.9e-20 Score=158.26 Aligned_cols=174 Identities=17% Similarity=0.175 Sum_probs=150.6
Q ss_pred EEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeecc
Q 036959 55 VLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNS 134 (233)
Q Consensus 55 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~ 134 (233)
..+.+++.++ .+|..+. +++++|++++|.+.+..|..|..+++|++|++++|.+.+..|..|..+++|++|++++|.
T Consensus 9 ~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 9 VCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred eEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 4688888887 6676554 789999999999987778889999999999999999997777889999999999999999
Q ss_pred ccccCCccccCCCCCcEEEecCCcCcC-cCchHHhhcCCCCcEEEeecccccccC-CCCcccccCCcEEEccCCcccCcc
Q 036959 135 FTGPIPWSFYNISSLKWINLGFNSLSG-TLPNDMCNRLPKLQEIYLHSNKLFGQI-PSSLSHCIDLRRLWMSDNKFTGRL 212 (233)
Q Consensus 135 ~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~ 212 (233)
+.+..+..+..+++|++|++++|.+.+ ..+. .+..+++|++|++++|...+.+ +..+..+++|++|++++|.+++..
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 164 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC
Confidence 997666669999999999999999974 2333 3448999999999999844444 468899999999999999999889
Q ss_pred chhccCcCCCCEEEecCCcC
Q 036959 213 RENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 213 ~~~l~~~~~L~~L~l~~n~l 232 (233)
|..++.+++|+.|++++|.+
T Consensus 165 ~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 165 SQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp TTTTTTCSEEEEEEEECSBS
T ss_pred hhhhhccccCceEecccCcc
Confidence 99999999999999999875
No 85
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=8.2e-20 Score=137.04 Aligned_cols=148 Identities=21% Similarity=0.240 Sum_probs=111.4
Q ss_pred CCCCccceeecCC---------CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEec
Q 036959 37 PLCNWVGVSCGAR---------HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLE 107 (233)
Q Consensus 37 ~~~~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 107 (233)
-.|.|..+.|... .++++.|++++|.+.+..+..|..+++|++|++++|.+....|..|..+++|++|+++
T Consensus 9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 3455666666531 2467888888888876666677888888888888888876667778888888888888
Q ss_pred CCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccc
Q 036959 108 DNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLF 185 (233)
Q Consensus 108 ~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 185 (233)
+|.+....+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcC
Confidence 88887544455677888888888888888666777778888888888888887 555555557788888888888765
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.82 E-value=1.1e-19 Score=154.91 Aligned_cols=168 Identities=23% Similarity=0.331 Sum_probs=134.0
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
+++|+.|+++++.+. .++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+. ..+ .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEE
Confidence 467888889888886 333 47888999999999998875433 888899999999999887 343 577888999999
Q ss_pred eeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 130 LRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
+++|.+.+ + ..+..+++|+.|++++|.+. .+ .. +..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~-~l-~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKIT-DI-TV-LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCC-CC-GG-GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccC-Cc-hh-hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 99998874 3 45778889999999999887 44 33 3478899999999998876655 788889999999999888
Q ss_pred CccchhccCcCCCCEEEecCCcC
Q 036959 210 GRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 210 ~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
+. ..+..+++|+.|+|++|++
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEE
T ss_pred CC--hHHccCCCCCEEEccCCcC
Confidence 54 3588889999999998875
No 87
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=2.5e-19 Score=148.72 Aligned_cols=168 Identities=26% Similarity=0.388 Sum_probs=84.4
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCC----------------
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGS---------------- 114 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~---------------- 114 (233)
++++.|++++|.+.+..+ +..+++|+.|++++|.+.. + ..+..+++|+.|++++|.+.+.
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 274 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 274 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCC
Confidence 455666666555543322 3445555555555554442 1 2344444555555555444422
Q ss_pred -----cchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCC
Q 036959 115 -----FPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIP 189 (233)
Q Consensus 115 -----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 189 (233)
.+. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ ...+++|+.|++++|.+.+.
T Consensus 275 n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~-- 346 (466)
T 1o6v_A 275 NQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV-- 346 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--
T ss_pred CccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--
Confidence 221 3444455555555554442211 4445555555555555542222 22455555666655555432
Q ss_pred CCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 190 SSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 190 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
..+..+++|+.|++++|.+++..| +..+++|+.|++++|++
T Consensus 347 ~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 347 SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 245556666666666666665544 56666666666666654
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.82 E-value=4.8e-21 Score=152.47 Aligned_cols=180 Identities=15% Similarity=0.156 Sum_probs=149.3
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCC-CchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGH-LPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
++++.|+++++.+.+..+. +..+++|++|++++|.+... ++..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 6788899999988866555 56789999999999998754 777889999999999999998867777888899999999
Q ss_pred eeec-ccccc-CCccccCCCCCcEEEecCC-cCcCcCchHHhhcCC-CCcEEEeeccc--cc-ccCCCCcccccCCcEEE
Q 036959 130 LRNN-SFTGP-IPWSFYNISSLKWINLGFN-SLSGTLPNDMCNRLP-KLQEIYLHSNK--LF-GQIPSSLSHCIDLRRLW 202 (233)
Q Consensus 130 l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~-~L~~L~l~~n~--~~-~~~~~~~~~~~~L~~L~ 202 (233)
+++| .+++. ++..+..+++|+.|++++| .+.+.........++ +|++|++++|. ++ +.++..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 9999 56642 5556778999999999999 886432233445889 99999999994 44 34566677899999999
Q ss_pred ccCCc-ccCccchhccCcCCCCEEEecCCc
Q 036959 203 MSDNK-FTGRLRENIGNLSKLRDLYTANNH 231 (233)
Q Consensus 203 l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~ 231 (233)
+++|. +++..+..+..+++|+.|++++|.
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 99998 777788899999999999999984
No 89
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.82 E-value=5.5e-19 Score=146.71 Aligned_cols=170 Identities=25% Similarity=0.344 Sum_probs=115.9
Q ss_pred CCCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcE
Q 036959 48 ARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQI 127 (233)
Q Consensus 48 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~ 127 (233)
...++++.|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.. . ..+..+++|++
T Consensus 174 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 247 (466)
T 1o6v_A 174 ANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTD 247 (466)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSE
T ss_pred ccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCE
Confidence 3458899999999998743 347889999999999999985544 7889999999999999884 3 35678889999
Q ss_pred EEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCc
Q 036959 128 LSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNK 207 (233)
Q Consensus 128 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 207 (233)
|++++|.+.+..+ +..+++|+.|++++|.+. .++. ...+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 248 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 248 LDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred EECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence 9999988874433 666777777777777766 3333 2355666666666666554322 4455555555555555
Q ss_pred ccCccchhccCcCCCCEEEecCCcC
Q 036959 208 FTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 208 ~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
+++..+ +..+++|+.|++++|++
T Consensus 321 l~~~~~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 321 ISDISP--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp CSCCGG--GGGCTTCCEEECCSSCC
T ss_pred CCCchh--hccCccCCEeECCCCcc
Confidence 554333 34444444444444443
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.5e-19 Score=144.76 Aligned_cols=194 Identities=15% Similarity=0.097 Sum_probs=145.6
Q ss_pred CCCccceeecCC---------CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCc-hhhhccCCccE-EEe
Q 036959 38 LCNWVGVSCGAR---------HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLP-NELGQLHRLKS-FGL 106 (233)
Q Consensus 38 ~~~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~-L~l 106 (233)
.|.+..+.|... .++++.|++++|.++...+..|.++++|++|++++|.+.+.++ .+|..++++++ +.+
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 466778888642 2578999999999986556689999999999999999865444 46788888775 566
Q ss_pred cCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCC-cCcCcCchHHhhcC-CCCcEEEeecccc
Q 036959 107 EDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFN-SLSGTLPNDMCNRL-PKLQEIYLHSNKL 184 (233)
Q Consensus 107 ~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~-~~L~~L~l~~n~~ 184 (233)
.+|++....+..|..+++|++|++++|.+....+..+....++..+++.++ .+. .++...+... ..++.|++++|.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccc
Confidence 678888666788899999999999999998655555556667778888664 454 5555444344 4678889999988
Q ss_pred cccCCCCcccccCCcEEEccC-CcccCccchhccCcCCCCEEEecCCcCC
Q 036959 185 FGQIPSSLSHCIDLRRLWMSD-NKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 185 ~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+.. +.......+|+++++.+ |.+....+++|..+++|+.||+++|+|+
T Consensus 167 ~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 167 QEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp CEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 754 44444556788888875 5666555567888889999999988874
No 91
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=134.05 Aligned_cols=133 Identities=21% Similarity=0.196 Sum_probs=72.3
Q ss_pred eEeEEEecCCcccccCC-CCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 52 RVRVLNLSNIGLQGTIP-PYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 52 ~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
.++.|++++|.+.+..+ ..|..+++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 34555666665554322 33455556666666666555444445555566666666666555444444555556666666
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccc
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLF 185 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 185 (233)
++|.+.+..|..+..+++|+.|++++|.+. .++...+..+++|+.|++++|++.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCC-CBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCC-EECHHHhcCCCCCCEEEecCcCCc
Confidence 666555444555555556666666666555 232222335555666666655554
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=8.8e-20 Score=140.49 Aligned_cols=147 Identities=19% Similarity=0.258 Sum_probs=86.8
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|+++++.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+ .+.. .. ++|++|++
T Consensus 41 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEEC
T ss_pred CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEEc
Confidence 55666666666665 333 456666666666666666533 32 6666666666666666662 3322 22 66666666
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 210 (233)
++|.+++ + ..+..+++|+.|++++|.+. .++ . +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+..
T Consensus 114 ~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~-~~~-~-l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 114 DNNELRD-T-DSLIHLKNLEILSIRNNKLK-SIV-M-LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CSSCCSB-S-GGGTTCTTCCEEECTTSCCC-BCG-G-GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred cCCccCC-C-hhhcCcccccEEECCCCcCC-CCh-H-HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 6666653 2 24556666666666666665 333 2 23566666666666666544 445566666666666666654
Q ss_pred c
Q 036959 211 R 211 (233)
Q Consensus 211 ~ 211 (233)
.
T Consensus 187 ~ 187 (263)
T 1xeu_A 187 E 187 (263)
T ss_dssp C
T ss_pred C
Confidence 3
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=1e-19 Score=153.67 Aligned_cols=182 Identities=23% Similarity=0.314 Sum_probs=111.6
Q ss_pred hhhcCCCCCCCCCC-----Cccce-eecCCCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccC
Q 036959 26 SVLANNWSISYPLC-----NWVGV-SCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLH 99 (233)
Q Consensus 26 ~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 99 (233)
..+.+ |.....+| .|.++ .|.. ++++.|+++++.+.+ +|..+ .++|++|++++|.+. .+| ..++
T Consensus 31 ~~l~~-W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~ 100 (571)
T 3cvr_A 31 SAWDK-WEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPA 100 (571)
T ss_dssp HHHHH-HHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCT
T ss_pred HHHHH-HhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccC
Confidence 34555 87777777 57777 5642 367777777777764 45433 255666666666665 344 2345
Q ss_pred CccEEEecCCcccCCcchhhc------------------CCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcC
Q 036959 100 RLKSFGLEDNKFSGSFPSWIG------------------MLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSG 161 (233)
Q Consensus 100 ~L~~L~l~~~~i~~~~~~~~~------------------~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 161 (233)
+|+.|++++|.+++ +|. +. .+++|++|++++|.+++ +|. .+++|+.|++++|.+.
T Consensus 101 ~L~~L~Ls~N~l~~-ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~- 173 (571)
T 3cvr_A 101 SLEYLDACDNRLST-LPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT- 173 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-
T ss_pred CCCEEEccCCCCCC-cch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC-
Confidence 55556665555552 333 22 23445555555555542 332 3456666666666666
Q ss_pred cCchHHhhcCCCCcEEEeecccccccCCCCcccccCC-------cEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 162 TLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDL-------RRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 162 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
.+|. + . ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|+++
T Consensus 174 ~lp~-l--~-~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 174 FLPE-L--P-ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CCCC-C--C-TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCC
T ss_pred Ccch-h--h-CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCC
Confidence 3555 2 1 67777777777776 4454 433 56 88888888887 46777777899999999999874
No 94
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=7.9e-20 Score=147.00 Aligned_cols=172 Identities=24% Similarity=0.261 Sum_probs=144.6
Q ss_pred CCCCccceeecCC---------CceEeEEEecCCcccccCCCCCC-CCCCccEEEcccCccCCCCchhhhccCCccEEEe
Q 036959 37 PLCNWVGVSCGAR---------HRRVRVLNLSNIGLQGTIPPYLG-NLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGL 106 (233)
Q Consensus 37 ~~~~~~~~~~~~~---------~~~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 106 (233)
-.|.+..+.|... .+.++.|++++|.+.+..+..+. .+++|+.|++++|.+....+..|..+++|++|++
T Consensus 16 C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 16 CLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp CEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 3455666777642 24588999999999977777787 8999999999999998777778999999999999
Q ss_pred cCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHh---hcCCCCcEEEeeccc
Q 036959 107 EDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMC---NRLPKLQEIYLHSNK 183 (233)
Q Consensus 107 ~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L~~L~l~~n~ 183 (233)
++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++...+ ..+++|+.|++++|.
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCC
Confidence 999999666667889999999999999999777888999999999999999998 6777665 468999999999999
Q ss_pred ccccCCCCcccccC--CcEEEccCCccc
Q 036959 184 LFGQIPSSLSHCID--LRRLWMSDNKFT 209 (233)
Q Consensus 184 ~~~~~~~~~~~~~~--L~~L~l~~n~~~ 209 (233)
+....+..+..++. ++.|++++|.+.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 98655556666766 488999999876
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.80 E-value=5.2e-19 Score=130.39 Aligned_cols=152 Identities=13% Similarity=0.233 Sum_probs=129.1
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
+++++.|+++++.+. .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 378999999999998 555 5889999999999999765 334788999999999999999866778889999999999
Q ss_pred eeeccccccCCccccCCCCCcEEEecCCc-CcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcc
Q 036959 130 LRNNSFTGPIPWSFYNISSLKWINLGFNS-LSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKF 208 (233)
Q Consensus 130 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 208 (233)
+++|.+++..+..+..+++|+.|++++|. +. .++ . +..+++|+.|++++|.+.+. + .+..+++|+.|++++|.+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~-l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-P-LKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-G-GGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-h-hcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 99999997778888999999999999998 65 665 3 44899999999999999753 3 678899999999999998
Q ss_pred cC
Q 036959 209 TG 210 (233)
Q Consensus 209 ~~ 210 (233)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 64
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=3.9e-21 Score=155.93 Aligned_cols=183 Identities=19% Similarity=0.213 Sum_probs=113.5
Q ss_pred CceEeEEEecCCcccc----cCCCCCCCCCCccEEEcccCccCCCC----chhhhcc---------CCccEEEecCCccc
Q 036959 50 HRRVRVLNLSNIGLQG----TIPPYLGNLSFLVYLNFGQNNLYGHL----PNELGQL---------HRLKSFGLEDNKFS 112 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~----~~~l~~l---------~~L~~L~l~~~~i~ 112 (233)
.++++.|++++|.+.+ .++..+..+++|++|++++|.+.... +..+..+ ++|++|++++|.+.
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 3566666776666654 24445566666777777766664222 2223333 66777777777665
Q ss_pred -CCcc---hhhcCCCCCcEEEeeeccccc-----cCCccccCCCCCcEEEecCCcCc----CcCchHHhhcCCCCcEEEe
Q 036959 113 -GSFP---SWIGMLSKLQILSLRNNSFTG-----PIPWSFYNISSLKWINLGFNSLS----GTLPNDMCNRLPKLQEIYL 179 (233)
Q Consensus 113 -~~~~---~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~L~~L~l 179 (233)
...+ ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.+. ..++..+. .+++|+.|++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~-~~~~L~~L~L 251 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGL 251 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG-GCTTCCEEEC
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc-cCCCcCEEEC
Confidence 2223 244556677777777776652 12225566777777777777774 23444333 6777888888
Q ss_pred eccccccc----CCCCc--ccccCCcEEEccCCcccC----ccchhc-cCcCCCCEEEecCCcCC
Q 036959 180 HSNKLFGQ----IPSSL--SHCIDLRRLWMSDNKFTG----RLRENI-GNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 180 ~~n~~~~~----~~~~~--~~~~~L~~L~l~~n~~~~----~~~~~l-~~~~~L~~L~l~~n~l~ 233 (233)
++|.+.+. ++..+ +.+++|+.|++++|.+++ .+|..+ .++++|+.|++++|+++
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 88777643 33444 236778888888888776 366666 55788888888888764
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=3e-20 Score=150.72 Aligned_cols=184 Identities=17% Similarity=0.184 Sum_probs=109.0
Q ss_pred CceEeEEEecCCcc---cccCCCCC-------CCCCCccEEEcccCccCC----CCchhhhccCCccEEEecCCcccCCc
Q 036959 50 HRRVRVLNLSNIGL---QGTIPPYL-------GNLSFLVYLNFGQNNLYG----HLPNELGQLHRLKSFGLEDNKFSGSF 115 (233)
Q Consensus 50 ~~~l~~L~l~~~~l---~~~~~~~~-------~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~i~~~~ 115 (233)
.++++.|+++++.+ .+.+|..+ ..+++|++|++++|.+.. .++..+..+++|++|++++|.+....
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 45666777766533 22333222 456677777777776664 24556666677777777777665222
Q ss_pred chhh----cCC---------CCCcEEEeeeccccc-cCC---ccccCCCCCcEEEecCCcCcCc----CchHHhhcCCCC
Q 036959 116 PSWI----GML---------SKLQILSLRNNSFTG-PIP---WSFYNISSLKWINLGFNSLSGT----LPNDMCNRLPKL 174 (233)
Q Consensus 116 ~~~~----~~l---------~~L~~L~l~~~~~~~-~~~---~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L 174 (233)
+..+ ..+ ++|++|++++|.++. .++ ..+..+++|+.|++++|.+... +....+..+++|
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L 218 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL 218 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc
Confidence 2222 222 677777777776652 222 2444566777777777766511 111122366777
Q ss_pred cEEEeeccccc----ccCCCCcccccCCcEEEccCCcccCc----cchhccC--cCCCCEEEecCCcCC
Q 036959 175 QEIYLHSNKLF----GQIPSSLSHCIDLRRLWMSDNKFTGR----LRENIGN--LSKLRDLYTANNHLQ 233 (233)
Q Consensus 175 ~~L~l~~n~~~----~~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~--~~~L~~L~l~~n~l~ 233 (233)
+.|++++|.++ ..+|..+..+++|+.|+|++|.+++. ++..+.. +++|+.|++++|+++
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~ 287 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence 77777777764 34555666777777777777777654 4455533 777777777777763
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.79 E-value=4.5e-20 Score=148.46 Aligned_cols=84 Identities=25% Similarity=0.234 Sum_probs=37.7
Q ss_pred EeEEEecCCcccccCC----CCCCCCC-CccEEEcccCccCCCCchhhhcc-----CCccEEEecCCcccCCcchh----
Q 036959 53 VRVLNLSNIGLQGTIP----PYLGNLS-FLVYLNFGQNNLYGHLPNELGQL-----HRLKSFGLEDNKFSGSFPSW---- 118 (233)
Q Consensus 53 l~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~~~i~~~~~~~---- 118 (233)
++.|++++|.+.+..+ ..+..++ +|++|++++|.+....+..+..+ ++|++|++++|.+....+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 5555555555443322 3334444 45555555555544444444332 45555555555544333322
Q ss_pred hcCC-CCCcEEEeeecccc
Q 036959 119 IGML-SKLQILSLRNNSFT 136 (233)
Q Consensus 119 ~~~l-~~L~~L~l~~~~~~ 136 (233)
+..+ ++|++|++++|.++
T Consensus 104 l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp HHTSCTTCCEEECCSSCGG
T ss_pred HHhCCCCccEEECcCCcCC
Confidence 2222 44555555555444
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.78 E-value=8.6e-20 Score=146.84 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=125.8
Q ss_pred EEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCc----hhhhccC-CccEEEecCCcccCCcchhhcCC-----CC
Q 036959 55 VLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLP----NELGQLH-RLKSFGLEDNKFSGSFPSWIGML-----SK 124 (233)
Q Consensus 55 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~~~i~~~~~~~~~~l-----~~ 124 (233)
...++++.+.+.+|..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35778888888777777777779999999999987666 7788888 89999999999987666666654 89
Q ss_pred CcEEEeeeccccccCCcc----ccCC-CCCcEEEecCCcCcCcCchHHhh---c-CCCCcEEEeecccccccCC----CC
Q 036959 125 LQILSLRNNSFTGPIPWS----FYNI-SSLKWINLGFNSLSGTLPNDMCN---R-LPKLQEIYLHSNKLFGQIP----SS 191 (233)
Q Consensus 125 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~~~---~-~~~L~~L~l~~n~~~~~~~----~~ 191 (233)
|++|++++|.+++..+.. +..+ ++|+.|++++|.+.+..+..+.. . .++|++|++++|.+.+..+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999998655543 3344 78889999988887433333321 2 3578888888887764322 22
Q ss_pred ccccc-CCcEEEccCCcccCccchhc----cCc-CCCCEEEecCCcC
Q 036959 192 LSHCI-DLRRLWMSDNKFTGRLRENI----GNL-SKLRDLYTANNHL 232 (233)
Q Consensus 192 ~~~~~-~L~~L~l~~n~~~~~~~~~l----~~~-~~L~~L~l~~n~l 232 (233)
+..++ +|++|++++|.+++..+..+ ..+ ++|+.|++++|++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 23333 67777777776665544333 333 4666666666665
No 100
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.78 E-value=7.3e-18 Score=139.51 Aligned_cols=164 Identities=20% Similarity=0.227 Sum_probs=99.0
Q ss_pred CceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 50 HRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
.++++.|++++|.+.+. + +..+++|++|++++|.+.+. + +..+++|++|++++|.+.+ .+ +..+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 46777777777777643 3 66777777777777777643 3 6667777777777777663 33 55666677777
Q ss_pred eeeccccccCCc--------------------cccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCC
Q 036959 130 LRNNSFTGPIPW--------------------SFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIP 189 (233)
Q Consensus 130 l~~~~~~~~~~~--------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 189 (233)
+++|.+++. +- .+..+++|+.|++++|.++ .++ ...+++|+.|++++|.+++.
T Consensus 134 l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~-~l~---l~~l~~L~~L~l~~N~l~~~-- 206 (457)
T 3bz5_A 134 CARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITKL-- 206 (457)
T ss_dssp CTTSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCC-CCC---CTTCTTCCEEECCSSCCSCC--
T ss_pred CCCCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccc-eec---cccCCCCCEEECcCCcCCee--
Confidence 766666532 10 1333445555555555554 233 22455566666666655533
Q ss_pred CCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcCC
Q 036959 190 SSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 190 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
.++.+++|+.|++++|.+++ +| +..+++|+.|++++|+++
T Consensus 207 -~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~ 246 (457)
T 3bz5_A 207 -DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT 246 (457)
T ss_dssp -CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS
T ss_pred -ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCC
Confidence 25556666677777776665 33 566667777777776653
No 101
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=8.4e-18 Score=139.14 Aligned_cols=144 Identities=23% Similarity=0.255 Sum_probs=107.7
Q ss_pred CCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEE
Q 036959 49 RHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQIL 128 (233)
Q Consensus 49 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 128 (233)
..++++.|+++++.+.+. | .+..+++|++|++++|.+.+. | +..+++|++|++++|.+.+ .+ +..+++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEE
Confidence 347899999999999854 4 689999999999999999853 4 7899999999999999985 33 7889999999
Q ss_pred EeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcc
Q 036959 129 SLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKF 208 (233)
Q Consensus 129 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 208 (233)
++++|.+++ ++ +..+++|+.|++++|.+.+ ++ + ..+++|++|++++|...+.+ .+..+++|++|++++|.+
T Consensus 112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l-~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--V-SHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--C-TTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--c-ccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 999999985 43 7888999999999999874 43 2 24556666666655332222 233444444444444444
Q ss_pred c
Q 036959 209 T 209 (233)
Q Consensus 209 ~ 209 (233)
+
T Consensus 183 ~ 183 (457)
T 3bz5_A 183 T 183 (457)
T ss_dssp C
T ss_pred c
Confidence 4
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=4.5e-18 Score=143.65 Aligned_cols=148 Identities=24% Similarity=0.352 Sum_probs=114.8
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|++++|.+.+ +|. +.. +|++|++++|.+.+ +|. .+++|+.|++++|.+++ +|. .+++|++|++
T Consensus 100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSV 167 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEEC
Confidence 566666666666664 444 433 67777777777764 554 57788999999998884 554 4689999999
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCC-------cEEEeecccccccCCCCcccccCCcEEEc
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL-------QEIYLHSNKLFGQIPSSLSHCIDLRRLWM 203 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 203 (233)
++|.+++ +|. +. ++|+.|++++|.++ .+|. +. . +| +.|++++|.++ .+|..+..+++|+.|++
T Consensus 168 s~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~-~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L 237 (571)
T 3cvr_A 168 RNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VP-V--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIIL 237 (571)
T ss_dssp CSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEEC
T ss_pred CCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HH-H--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEe
Confidence 9999985 666 54 89999999999998 7776 43 2 66 99999999998 57887888999999999
Q ss_pred cCCcccCccchhccCcC
Q 036959 204 SDNKFTGRLRENIGNLS 220 (233)
Q Consensus 204 ~~n~~~~~~~~~l~~~~ 220 (233)
++|.+++..|..+..++
T Consensus 238 ~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 238 EDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CSSSCCHHHHHHHHHHH
T ss_pred eCCcCCCcCHHHHHHhh
Confidence 99999998888877653
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=1e-17 Score=130.87 Aligned_cols=150 Identities=24% Similarity=0.387 Sum_probs=128.6
Q ss_pred CCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCc
Q 036959 71 LGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLK 150 (233)
Q Consensus 71 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 150 (233)
+..+++|+.|++++|.+... + .+..+++|++|++++|.+.+ .+. +..+++|++|++++|.+.+ + ..+..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-C-hhhccCCCCC
Confidence 45678999999999998743 4 48899999999999999985 444 8899999999999999874 3 3488899999
Q ss_pred EEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCC
Q 036959 151 WINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230 (233)
Q Consensus 151 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 230 (233)
.|++++|.+. .++ .+ ..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|
T Consensus 116 ~L~L~~n~i~-~~~-~l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 116 SLSLEHNGIS-DIN-GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp EEECTTSCCC-CCG-GG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEECCCCcCC-CCh-hh-cCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 9999999998 443 33 4899999999999999864 578889999999999999987655 899999999999999
Q ss_pred cCC
Q 036959 231 HLQ 233 (233)
Q Consensus 231 ~l~ 233 (233)
+++
T Consensus 189 ~i~ 191 (291)
T 1h6t_A 189 HIS 191 (291)
T ss_dssp CCC
T ss_pred cCC
Confidence 875
No 104
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=9.7e-20 Score=158.47 Aligned_cols=201 Identities=17% Similarity=0.164 Sum_probs=110.1
Q ss_pred hhhHHHHHHHHHhcCCCchhhcCCCCC-CCCCCCccceeecCCCceEeEEEecCCcccccCCCCCCCCCCccEE-----E
Q 036959 8 TTDQSALLMFKAHVIDPHSVLANNWSI-SYPLCNWVGVSCGARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYL-----N 81 (233)
Q Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L-----~ 81 (233)
..+++++.++..+...+.+.-..+|.. +.....|.+..++. ++++.|++.++.+.. .+..+-....|..+ +
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~ 207 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDD 207 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcccccCcc
Confidence 356788888888887665555444644 34567787777654 678888888887763 33322222222222 2
Q ss_pred cccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcC
Q 036959 82 FGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSG 161 (233)
Q Consensus 82 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 161 (233)
+..|.+. ..+..+..++.|+.|++++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|.++
T Consensus 208 ~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 208 DIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred cccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 2223332 34666788888888999888887 56666667888888888888888 77888888888889999888887
Q ss_pred cCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhcc
Q 036959 162 TLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIG 217 (233)
Q Consensus 162 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 217 (233)
.+|..+. .+++|++|+|++|.+. .+|..++.+++|+.|+|++|.+++.+|..+.
T Consensus 284 ~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 284 SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 7777665 7888889999888886 6677788888888999988888877666553
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=1.2e-17 Score=119.98 Aligned_cols=130 Identities=22% Similarity=0.220 Sum_probs=58.1
Q ss_pred CccEEEecCCccc-CCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEE
Q 036959 100 RLKSFGLEDNKFS-GSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIY 178 (233)
Q Consensus 100 ~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 178 (233)
+|++|++++|.+. +..|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+.+|. .+..+++|+.|+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCEEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCEEe
Confidence 3444444444443 22333333444444444444444322 3334444444555555444422222 222355555555
Q ss_pred eecccccccC-CCCcccccCCcEEEccCCcccCccc---hhccCcCCCCEEEecCCcC
Q 036959 179 LHSNKLFGQI-PSSLSHCIDLRRLWMSDNKFTGRLR---ENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 179 l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~l 232 (233)
+++|.+.+.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 5555544321 1344455555555555555554333 3455555555555555543
No 106
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.8e-17 Score=121.68 Aligned_cols=130 Identities=25% Similarity=0.362 Sum_probs=93.1
Q ss_pred cEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcch-hhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecC
Q 036959 78 VYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPS-WIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGF 156 (233)
Q Consensus 78 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 156 (233)
+.++++++.+. .+|..+. .++++|++++|.+....+. .+..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56778887775 4554332 3788888888887744433 367778888888888888766677777778888888888
Q ss_pred CcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCc
Q 036959 157 NSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGR 211 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 211 (233)
|.+. .++...+..+++|+.|++++|.+++..|..+..+++|++|++++|.+.+.
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 8877 34444344677788888888887777777777777888888888877654
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=4.4e-17 Score=138.82 Aligned_cols=165 Identities=23% Similarity=0.370 Sum_probs=135.7
Q ss_pred eEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeec
Q 036959 54 RVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNN 133 (233)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 133 (233)
..+.+....+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+... +. +..+++|++|++++|
T Consensus 24 ~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 24 IKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSS
T ss_pred HHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCC
Confidence 334444454443322 4678889999999999874 44 588999999999999999854 44 889999999999999
Q ss_pred cccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccc
Q 036959 134 SFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLR 213 (233)
Q Consensus 134 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 213 (233)
.+.+ ++ .+..+++|+.|++++|.+. .++ .+ ..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..|
T Consensus 98 ~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~-~l-~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 98 KIKD-LS-SLKDLKKLKSLSLEHNGIS-DIN-GL-VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp CCCC-CT-TSTTCTTCCEEECTTSCCC-CCG-GG-GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG
T ss_pred CCCC-Ch-hhccCCCCCEEEecCCCCC-CCc-cc-cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh
Confidence 9974 33 7888999999999999998 454 33 4899999999999999864 578889999999999999997666
Q ss_pred hhccCcCCCCEEEecCCcCC
Q 036959 214 ENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 214 ~~l~~~~~L~~L~l~~n~l~ 233 (233)
+..+++|+.|+|++|+|+
T Consensus 171 --l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 171 --LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp --GTTCTTCCEEECCSSCCC
T ss_pred --hccCCCCCEEECcCCCCC
Confidence 899999999999999874
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=4.3e-17 Score=125.43 Aligned_cols=166 Identities=20% Similarity=0.198 Sum_probs=136.1
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
.++..++++++.+.+.. .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+ .+. +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence 44566677777776333 4778899999999999987 445 68899999999999999984 444 888999999999
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 210 (233)
++|.+.+ ++... . ++|+.|++++|.+. .++ . +..+++|+.|++++|.+++. + .+..+++|+.|++++|.+++
T Consensus 93 ~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~-~~~-~-l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 93 NRNRLKN-LNGIP-S-ACLSRLFLDNNELR-DTD-S-LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CSSCCSC-CTTCC-C-SSCCEEECCSSCCS-BSG-G-GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCccCC-cCccc-c-CcccEEEccCCccC-CCh-h-hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 9999984 44333 3 89999999999998 454 3 34899999999999999854 3 67889999999999999986
Q ss_pred ccchhccCcCCCCEEEecCCcC
Q 036959 211 RLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 211 ~~~~~l~~~~~L~~L~l~~n~l 232 (233)
. ..+..+++|+.|++++|++
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEE
T ss_pred h--HHhccCCCCCEEeCCCCcc
Confidence 5 6788999999999999986
No 109
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.73 E-value=1.5e-17 Score=141.96 Aligned_cols=100 Identities=27% Similarity=0.403 Sum_probs=59.7
Q ss_pred chhhcCCCCCCCCCCCccceee------cCCCceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhcc
Q 036959 25 HSVLANNWSISYPLCNWVGVSC------GARHRRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQL 98 (233)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l 98 (233)
...... |....++|.|.+..+ .....+++.|+++++.+. .+|..+. ++|+.|++++|.+. .+|. .+
T Consensus 9 ~~~w~~-W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l 80 (622)
T 3g06_A 9 DAVWSA-WRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LP 80 (622)
T ss_dssp -CHHHH-HHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CC
T ss_pred HHHHHH-HHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cC
Confidence 334455 777778888865321 111234677777777776 5555444 56777777777665 3443 45
Q ss_pred CCccEEEecCCcccCCcchhhcCCCCCcEEEeeecccc
Q 036959 99 HRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFT 136 (233)
Q Consensus 99 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~ 136 (233)
++|++|++++|.++ .+|. .+++|++|++++|.+.
T Consensus 81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 66777777777666 3443 3456666666666555
No 110
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=1.8e-19 Score=149.12 Aligned_cols=135 Identities=19% Similarity=0.190 Sum_probs=79.3
Q ss_pred cCCccEEEecCCcccCC----cchhhcCCCCCcEEEeeeccccccCCcccc-----CCCCCcEEEecCCcCcCc----Cc
Q 036959 98 LHRLKSFGLEDNKFSGS----FPSWIGMLSKLQILSLRNNSFTGPIPWSFY-----NISSLKWINLGFNSLSGT----LP 164 (233)
Q Consensus 98 l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~ 164 (233)
+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+..+. ..++|+.|++++|.+.+. ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 44555555555554421 233344455566666655555422221111 224666666666666532 12
Q ss_pred hHHhhcCCCCcEEEeecccccccCCCCccc-----ccCCcEEEccCCcccC----ccchhccCcCCCCEEEecCCcCC
Q 036959 165 NDMCNRLPKLQEIYLHSNKLFGQIPSSLSH-----CIDLRRLWMSDNKFTG----RLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 165 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
..+ ..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++ .++..+..+++|++|++++|+++
T Consensus 335 ~~l-~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 335 SVL-AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHH-HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHH-hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 222 25678888888888776443333322 5688888888888875 56777778888888888888774
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.72 E-value=2.1e-17 Score=118.59 Aligned_cols=132 Identities=18% Similarity=0.147 Sum_probs=68.8
Q ss_pred CCccEEEcccCccC-CCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEE
Q 036959 75 SFLVYLNFGQNNLY-GHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWIN 153 (233)
Q Consensus 75 ~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 153 (233)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555544 33444445555555555555555422 3444555555555555555544444444455555666
Q ss_pred ecCCcCcCcCch-HHhhcCCCCcEEEeecccccccCC---CCcccccCCcEEEccCCccc
Q 036959 154 LGFNSLSGTLPN-DMCNRLPKLQEIYLHSNKLFGQIP---SSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 154 l~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~ 209 (233)
+++|.+. .++. ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6655554 3321 222355666666666666653333 24555666666666666554
No 112
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=4.3e-17 Score=119.67 Aligned_cols=127 Identities=21% Similarity=0.312 Sum_probs=91.4
Q ss_pred cEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCC
Q 036959 78 VYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFN 157 (233)
Q Consensus 78 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 157 (233)
+.++++++.+. .+|..+ .++|++|++++|.+. .+|..|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46777777776 455432 357888888888887 56677777888888888888887666666777778888888888
Q ss_pred cCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 158 SLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 158 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
.++ .++...+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777 455444456777888888888777555556777777778887777765
No 113
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=1.6e-16 Score=135.61 Aligned_cols=77 Identities=30% Similarity=0.335 Sum_probs=59.3
Q ss_pred CCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEE
Q 036959 147 SSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLY 226 (233)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 226 (233)
++|+.|++++|.++ .+| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|+
T Consensus 221 ~~L~~L~Ls~N~L~-~lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVN 290 (622)
T ss_dssp TTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEE
T ss_pred CCCCEEEccCCccC-cCC----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEE
Confidence 45666677766665 344 24577888888888776 3444 5678999999999998 6688899999999999
Q ss_pred ecCCcCC
Q 036959 227 TANNHLQ 233 (233)
Q Consensus 227 l~~n~l~ 233 (233)
+++|+++
T Consensus 291 L~~N~l~ 297 (622)
T 3g06_A 291 LEGNPLS 297 (622)
T ss_dssp CCSCCCC
T ss_pred ecCCCCC
Confidence 9999874
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.7e-20 Score=158.78 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=57.0
Q ss_pred CCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEc
Q 036959 124 KLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWM 203 (233)
Q Consensus 124 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 203 (233)
.|++|++++|.+++ +|. +..+++|+.|++++|.+. .+|..+. .+++|+.|++++|.+++ +| .++.+++|+.|+|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh-cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 35555555555552 343 555555666666665555 5554443 55556666666655553 33 4555555666666
Q ss_pred cCCcccCcc-chhccCcCCCCEEEecCCcC
Q 036959 204 SDNKFTGRL-RENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 204 ~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l 232 (233)
++|.+++.. |..++.+++|+.|++++|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 666555443 55555555666666665554
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=1.8e-17 Score=116.67 Aligned_cols=128 Identities=21% Similarity=0.231 Sum_probs=93.3
Q ss_pred CCccEEEecCCccc-CCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEE
Q 036959 99 HRLKSFGLEDNKFS-GSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEI 177 (233)
Q Consensus 99 ~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 177 (233)
++|+.|++++|.+. +..|..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+.+|.. +..+++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVL-AEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHH-HHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHH-hhhCCCCCEE
Confidence 55677777777765 45555666677777777777777643 56667778888888888887445543 3368888888
Q ss_pred Eeeccccccc-CCCCcccccCCcEEEccCCcccCccc---hhccCcCCCCEEEecC
Q 036959 178 YLHSNKLFGQ-IPSSLSHCIDLRRLWMSDNKFTGRLR---ENIGNLSKLRDLYTAN 229 (233)
Q Consensus 178 ~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~ 229 (233)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888753 23667888889999999998886655 5788889999988764
No 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=1.3e-16 Score=115.42 Aligned_cols=133 Identities=22% Similarity=0.306 Sum_probs=98.1
Q ss_pred ccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecC
Q 036959 77 LVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGF 156 (233)
Q Consensus 77 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 156 (233)
.+.++++++.+. .+|.. ..++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 466778877776 34432 236788888888888755555677788888888888888755555677788888888888
Q ss_pred CcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccc
Q 036959 157 NSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLR 213 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 213 (233)
|.++ .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 86 N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8887 5555555577888888888888876555556778888888888888776543
No 117
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=1.9e-18 Score=143.03 Aligned_cols=180 Identities=24% Similarity=0.257 Sum_probs=108.4
Q ss_pred eEeEEEecCCcccc----cCCCCCCCCCCccEEEcccCccCCCCchhhhc-----cCCccEEEecCCcccCCc----chh
Q 036959 52 RVRVLNLSNIGLQG----TIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQ-----LHRLKSFGLEDNKFSGSF----PSW 118 (233)
Q Consensus 52 ~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-----l~~L~~L~l~~~~i~~~~----~~~ 118 (233)
+++.|++++|.+.+ .++..+..+++|++|++++|.+....+..+.. .++|++|++++|.++... +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 57778888777763 34666777777888888877765332332222 346777777777766422 344
Q ss_pred hcCCCCCcEEEeeeccccccCCcccc-----CCCCCcEEEecCCcCcCc----CchHHhhcCCCCcEEEeecccccccC-
Q 036959 119 IGMLSKLQILSLRNNSFTGPIPWSFY-----NISSLKWINLGFNSLSGT----LPNDMCNRLPKLQEIYLHSNKLFGQI- 188 (233)
Q Consensus 119 ~~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~- 188 (233)
+..+++|++|++++|.++...+..+. ..++|+.|++++|.+.+. ++..+ ..+++|++|++++|.+.+..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~ 244 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV-ASKASLRELALGSNKLGDVGM 244 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH-HHCTTCCEEECCSSBCHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHH-HhCCCccEEeccCCcCChHHH
Confidence 55567777777777776533222221 245777777777776532 22222 25677777777777665321
Q ss_pred ----CCCcccccCCcEEEccCCcccCc----cchhccCcCCCCEEEecCCcC
Q 036959 189 ----PSSLSHCIDLRRLWMSDNKFTGR----LRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 189 ----~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l 232 (233)
+..+..+++|++|++++|.+++. ++..+..+++|++|++++|++
T Consensus 245 ~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 245 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 11222456677777777766643 455555667777777777665
No 118
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=5.5e-16 Score=128.16 Aligned_cols=119 Identities=28% Similarity=0.408 Sum_probs=52.2
Q ss_pred CccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEec
Q 036959 76 FLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLG 155 (233)
Q Consensus 76 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 155 (233)
+|++|++++|.+.+ +| .+..+++|++|++++|++. ..|.. ..+|++|++++|.+.+ +| .+..+++|+.|+++
T Consensus 132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 44444444444442 33 2444555555555555444 22221 1244455555544442 23 34444455555555
Q ss_pred CCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 156 FNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
+|.+. .+|. ..++|++|++++|.+. .+|. ++.+++|++|++++|.++
T Consensus 204 ~N~l~-~l~~----~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 204 NNSLK-KLPD----LPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp SSCCS-SCCC----CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred CCcCC-cCCC----CcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCC
Confidence 55444 2222 1134444444444443 2332 444444555555444444
No 119
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=5e-16 Score=128.40 Aligned_cols=140 Identities=31% Similarity=0.364 Sum_probs=92.3
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
++++.|++++|.+.+ +| .+..+++|++|++++|.+.+ +|.. .++|++|++++|.+.+ .| .+..+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 578888888888874 66 58899999999999998874 4532 3578888888888874 55 4777888888888
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
++|.+.+ +|... ++|+.|++++|.+. .+|. +..+++|++|++++|.+.+ +|.. .++|+.|++++|.+.
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~ 270 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE--LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLT 270 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCS
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCC-cccc--cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccc
Confidence 8887763 33222 36666666666665 5553 2356666666666666553 2321 234444444444444
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.4e-16 Score=116.84 Aligned_cols=131 Identities=24% Similarity=0.277 Sum_probs=111.4
Q ss_pred eEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCch-hhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeee
Q 036959 54 RVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPN-ELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRN 132 (233)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 132 (233)
+.++++++.+. .+|..+.. ++++|++++|.+....+. .+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 57888888886 67765543 899999999999865553 488999999999999999977788899999999999999
Q ss_pred ccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccC
Q 036959 133 NSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQI 188 (233)
Q Consensus 133 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 188 (233)
|.+++..+..+..+++|+.|++++|.+++..+.. +..+++|+.|++++|++....
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCccCcC
Confidence 9999777778999999999999999998544544 448999999999999987543
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=8.9e-17 Score=113.05 Aligned_cols=126 Identities=22% Similarity=0.257 Sum_probs=69.6
Q ss_pred ceEeEEEecCCccc-ccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEE
Q 036959 51 RRVRVLNLSNIGLQ-GTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILS 129 (233)
Q Consensus 51 ~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 129 (233)
++++.|++++|.+. +.+|..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666677766665 45566666666666666666666533 4455566666666666666543555555556666666
Q ss_pred eeecccccc-CCccccCCCCCcEEEecCCcCcCcCch---HHhhcCCCCcEEEe
Q 036959 130 LRNNSFTGP-IPWSFYNISSLKWINLGFNSLSGTLPN---DMCNRLPKLQEIYL 179 (233)
Q Consensus 130 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l 179 (233)
+++|.+.+. .+..+..+++|+.|++++|.+. ..+. ..+..+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccC
Confidence 666655531 1234445555555555555554 2222 23334555555544
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=6.2e-16 Score=113.50 Aligned_cols=127 Identities=25% Similarity=0.360 Sum_probs=110.9
Q ss_pred eEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeec
Q 036959 54 RVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNN 133 (233)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 133 (233)
+.++++++.+. .+|..+. +++++|++++|.+. .+|..+..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46788888887 6666553 68999999999997 67788999999999999999999777778999999999999999
Q ss_pred cccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeeccccc
Q 036959 134 SFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLF 185 (233)
Q Consensus 134 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 185 (233)
.++...+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCee
Confidence 999777778999999999999999998 777766668999999999999875
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=1.3e-16 Score=115.47 Aligned_cols=134 Identities=18% Similarity=0.119 Sum_probs=77.7
Q ss_pred CCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCc
Q 036959 71 LGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLK 150 (233)
Q Consensus 71 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 150 (233)
+..+.+|+.|++++|.+.. ++......++|+.|++++|.+.+ . ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4455667777777776663 34322223367777777776663 2 4456666677777776666633333345666666
Q ss_pred EEEecCCcCcCcCch-HHhhcCCCCcEEEeecccccccCCCC----cccccCCcEEEccCCccc
Q 036959 151 WINLGFNSLSGTLPN-DMCNRLPKLQEIYLHSNKLFGQIPSS----LSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 151 ~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~L~l~~n~~~ 209 (233)
.|++++|.+. .++. ..+..+++|+.|++++|++. ..|.. +..+++|+.|++++|...
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666666664 4443 12235666666666666665 23432 556666666666666544
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.67 E-value=1.1e-18 Score=128.83 Aligned_cols=132 Identities=21% Similarity=0.297 Sum_probs=85.2
Q ss_pred hhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCC
Q 036959 93 NELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLP 172 (233)
Q Consensus 93 ~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 172 (233)
..+..+++|++|++++|.+.. +| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+. .++ .+ ..++
T Consensus 42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~-~~l~ 115 (198)
T 1ds9_A 42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GI-EKLV 115 (198)
T ss_dssp HHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH-HH-HHHH
T ss_pred HHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC-cc-ccCC
Confidence 366777777777777777763 44 5666677777777777776 45555555567777777777776 343 23 3567
Q ss_pred CCcEEEeecccccccCC-CCcccccCCcEEEccCCcccCccch----------hccCcCCCCEEEecCCcC
Q 036959 173 KLQEIYLHSNKLFGQIP-SSLSHCIDLRRLWMSDNKFTGRLRE----------NIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 173 ~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~----------~l~~~~~L~~L~l~~n~l 232 (233)
+|+.|++++|.+....+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|| +|++
T Consensus 116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 77777777777653222 3456677777777777777654443 366777777776 5544
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=2.1e-17 Score=143.83 Aligned_cols=107 Identities=28% Similarity=0.493 Sum_probs=50.7
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
+.++.|+|++|.+. .++..+..+++|++|++++|.+. .+|..+..+++|++|+|++|.+. .+|..+..+++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 34444555544444 33333344444555555554444 44444444455555555555444 34444444444555555
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSG 161 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 161 (233)
++|.++ .+|..+..+++|+.|++++|.+.+
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred CCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 544444 344444444445555555554443
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.66 E-value=1.3e-15 Score=110.15 Aligned_cols=131 Identities=25% Similarity=0.341 Sum_probs=107.6
Q ss_pred eEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeec
Q 036959 54 RVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNN 133 (233)
Q Consensus 54 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 133 (233)
+.++++++.+. .+|..+ .++++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 44555666666 445433 368999999999998666667889999999999999999666666788999999999999
Q ss_pred cccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccC
Q 036959 134 SFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQI 188 (233)
Q Consensus 134 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 188 (233)
.+++..+..+..+++|+.|++++|.+. .++...+..+++|+.|++++|++.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccC
Confidence 999666667888999999999999998 677776668999999999999987543
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=2.1e-16 Score=126.44 Aligned_cols=163 Identities=16% Similarity=0.073 Sum_probs=113.4
Q ss_pred CCceEeEEEecCCcccccCC-CCCCCCCCccE-EEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCc
Q 036959 49 RHRRVRVLNLSNIGLQGTIP-PYLGNLSFLVY-LNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQ 126 (233)
Q Consensus 49 ~~~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~-L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 126 (233)
..++++.|++++|.+.+.++ ..|..++++.. +.+.+|.+....|..|..+++|++|++++|.+....+..+.....+.
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 131 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131 (350)
T ss_dssp TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCE
T ss_pred CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhh
Confidence 45889999999999865554 56788888775 55667888866778889999999999999998855444555566677
Q ss_pred EEEeeec-cccccCCccccCCC-CCcEEEecCCcCcCcCchHHhhcCCCCcEEEeec-ccccccCCCCcccccCCcEEEc
Q 036959 127 ILSLRNN-SFTGPIPWSFYNIS-SLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHS-NKLFGQIPSSLSHCIDLRRLWM 203 (233)
Q Consensus 127 ~L~l~~~-~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l 203 (233)
.+++.++ .+....+..+..+. .++.|++++|.++ .++...+ ...+++++++.+ |.+....++.+..+++|++|++
T Consensus 132 ~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209 (350)
T ss_dssp EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEEC
T ss_pred hhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhc
Confidence 7777653 45433333444443 5777888888876 6666555 456677777764 4454333445677778888888
Q ss_pred cCCcccCccc
Q 036959 204 SDNKFTGRLR 213 (233)
Q Consensus 204 ~~n~~~~~~~ 213 (233)
++|.++...+
T Consensus 210 s~N~l~~lp~ 219 (350)
T 4ay9_X 210 SRTRIHSLPS 219 (350)
T ss_dssp TTSCCCCCCS
T ss_pred CCCCcCccCh
Confidence 8887774433
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=1e-15 Score=121.48 Aligned_cols=102 Identities=21% Similarity=0.218 Sum_probs=52.2
Q ss_pred CCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCc-EEEeecccccccCCCCcccccCCcE
Q 036959 122 LSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQ-EIYLHSNKLFGQIPSSLSHCIDLRR 200 (233)
Q Consensus 122 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~L~~ 200 (233)
+++|+++++.+|.+....+..|.++++|+.+.+.+| +. .++...|..+++|+ .+++.+ .++.+.+..|..+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 345555555555554333344555555555555554 33 44444444555555 555555 343344445555555555
Q ss_pred EEccCCcccCccchhccCcCCCCEEE
Q 036959 201 LWMSDNKFTGRLRENIGNLSKLRDLY 226 (233)
Q Consensus 201 L~l~~n~~~~~~~~~l~~~~~L~~L~ 226 (233)
+++++|.++...+.+|.++++|+.|+
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEeCCCccCccchhhhcCCcchhhhc
Confidence 55555555544445555555555554
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=1.1e-17 Score=123.28 Aligned_cols=151 Identities=19% Similarity=0.300 Sum_probs=119.4
Q ss_pred eEeEEEecCCcccccCCC------CCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCC
Q 036959 52 RVRVLNLSNIGLQGTIPP------YLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKL 125 (233)
Q Consensus 52 ~l~~L~l~~~~l~~~~~~------~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L 125 (233)
.++.++++.+.+.+..+. .+..+++|++|++++|.+.. +| .+..+++|++|++++|.+. .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344445555555545444 78889999999999999985 66 8899999999999999998 677777777999
Q ss_pred cEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCch-HHhhcCCCCcEEEeecccccccCCCC----------ccc
Q 036959 126 QILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPN-DMCNRLPKLQEIYLHSNKLFGQIPSS----------LSH 194 (233)
Q Consensus 126 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~----------~~~ 194 (233)
++|++++|.+++ +| .+..+++|+.|++++|.+. .++. ..+..+++|++|++++|++.+..|.. +..
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 999999999984 44 5778889999999999997 4443 34458999999999999987665542 678
Q ss_pred ccCCcEEEccCCcccC
Q 036959 195 CIDLRRLWMSDNKFTG 210 (233)
Q Consensus 195 ~~~L~~L~l~~n~~~~ 210 (233)
+++|+.|| ++.++.
T Consensus 173 l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 173 LPNLKKLD--GMPVDV 186 (198)
T ss_dssp CSSCSEEC--CGGGTT
T ss_pred CCCcEEEC--CcccCH
Confidence 89999987 666653
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=1.7e-15 Score=109.43 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=62.3
Q ss_pred ccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcE
Q 036959 97 QLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQE 176 (233)
Q Consensus 97 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 176 (233)
.+++|++|++++|.+. ..+......++|++|++++|.+++. ..+..+++|+.|++++|.+. .++..++..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCE
Confidence 3445555555555555 2333222222555555555555432 34445555555555555554 334333335555555
Q ss_pred EEeecccccccCCC--CcccccCCcEEEccCCcccCccch----hccCcCCCCEEEecCCc
Q 036959 177 IYLHSNKLFGQIPS--SLSHCIDLRRLWMSDNKFTGRLRE----NIGNLSKLRDLYTANNH 231 (233)
Q Consensus 177 L~l~~n~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~l~~n~ 231 (233)
|++++|.+. .+|. .+..+++|+.|++++|.++. .|. .+..+++|+.||+++|.
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 555555553 2232 44455555555555555542 232 24555555555555543
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.56 E-value=1.7e-14 Score=103.61 Aligned_cols=108 Identities=22% Similarity=0.369 Sum_probs=88.3
Q ss_pred CccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEe
Q 036959 100 RLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYL 179 (233)
Q Consensus 100 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 179 (233)
..+.++++++.+. .+|..+ ..+|++|++++|.+++..|..+..+++|+.|++++|.+. .++...+..+++|+.|++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEEC
Confidence 4678899999888 566544 378899999999998777778888889999999999988 667666668889999999
Q ss_pred ecccccccCCCCcccccCCcEEEccCCcccCc
Q 036959 180 HSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGR 211 (233)
Q Consensus 180 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 211 (233)
++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99998876666788888999999999988744
No 132
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.55 E-value=3.1e-14 Score=102.63 Aligned_cols=107 Identities=21% Similarity=0.319 Sum_probs=87.2
Q ss_pred ccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEee
Q 036959 101 LKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLH 180 (233)
Q Consensus 101 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 180 (233)
-+.++++++.+. .+|..+. ++|++|++++|.+.+..|..+..+++|+.|++++|.+. .++...+..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECC
Confidence 467889998887 6666543 78899999999998777778888899999999999988 6777666678899999999
Q ss_pred cccccccCCCCcccccCCcEEEccCCcccCc
Q 036959 181 SNKLFGQIPSSLSHCIDLRRLWMSDNKFTGR 211 (233)
Q Consensus 181 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 211 (233)
+|.+.+..+..+..+++|+.|++++|.+...
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 9998866566688888999999999988743
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=3.3e-14 Score=120.44 Aligned_cols=170 Identities=18% Similarity=0.172 Sum_probs=132.0
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCc-------------cCCCCchhhhc--------------------
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNN-------------LYGHLPNELGQ-------------------- 97 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~l~~-------------------- 97 (233)
+.++.|++++|.+. .+|..+..+++|+.|++++|. ..+..|..+..
T Consensus 349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 34455666766665 667777777777777765543 11122221111
Q ss_pred ------------cCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCch
Q 036959 98 ------------LHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPN 165 (233)
Q Consensus 98 ------------l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 165 (233)
...|+.|++++|.++ .+|. +..+++|++|++++|.++ .+|..+..+++|+.|++++|.++ .+|
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp- 502 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-
T ss_pred hhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CCc-
Confidence 125789999999998 4676 889999999999999999 78999999999999999999998 577
Q ss_pred HHhhcCCCCcEEEeecccccccC-CCCcccccCCcEEEccCCcccCccc---hhccCcCCCCEEEe
Q 036959 166 DMCNRLPKLQEIYLHSNKLFGQI-PSSLSHCIDLRRLWMSDNKFTGRLR---ENIGNLSKLRDLYT 227 (233)
Q Consensus 166 ~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l 227 (233)
.+ ..+++|+.|++++|.+++.. |..++.+++|+.|++++|.+++.++ ..+..+++|+.|++
T Consensus 503 ~l-~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GV-ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GG-TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cc-CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 44 48999999999999999776 8999999999999999999986644 23445899999975
No 134
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.53 E-value=7.4e-16 Score=131.28 Aligned_cols=184 Identities=16% Similarity=0.113 Sum_probs=98.7
Q ss_pred CceEeEEEecCCcccccCC-CCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEec---------------------
Q 036959 50 HRRVRVLNLSNIGLQGTIP-PYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLE--------------------- 107 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~--------------------- 107 (233)
.++++.|++++|.+.+... ..+..+++|+.|+++++.....++..+..+++|++|+++
T Consensus 292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~ 371 (592)
T 3ogk_B 292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371 (592)
T ss_dssp GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence 3688999999888653222 234556666666666321111222223445555555555
Q ss_pred ---------------CCcccCCcchhhcC-CCCCcEEEee----ecccccc-----CCccccCCCCCcEEEecCCc--Cc
Q 036959 108 ---------------DNKFSGSFPSWIGM-LSKLQILSLR----NNSFTGP-----IPWSFYNISSLKWINLGFNS--LS 160 (233)
Q Consensus 108 ---------------~~~i~~~~~~~~~~-l~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~ 160 (233)
.+.+++..+..+.. +++|++|+++ .+.+++. ++..+..+++|+.|+++.+. +.
T Consensus 372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~ 451 (592)
T 3ogk_B 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451 (592)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCC
T ss_pred HHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCcc
Confidence 33333222222222 4445555553 2222211 11113345566666664322 33
Q ss_pred CcCchHHhhcCCCCcEEEeecccccc-cCCCCcccccCCcEEEccCCcccCc-cchhccCcCCCCEEEecCCcCC
Q 036959 161 GTLPNDMCNRLPKLQEIYLHSNKLFG-QIPSSLSHCIDLRRLWMSDNKFTGR-LRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 161 ~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+.....+...+++|+.|++++|.+++ .++..+..+++|+.|++++|.+++. ++..+..+++|+.|++++|+++
T Consensus 452 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 452 DLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 23333344446777777777777654 2334446678888888888887644 3444456788888888888764
No 135
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=3.4e-14 Score=112.72 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=130.9
Q ss_pred CceEeEEEecCCccc--------------------ccCCCCCCC--------CCCccEEEcccCccCCCCchhhhccCCc
Q 036959 50 HRRVRVLNLSNIGLQ--------------------GTIPPYLGN--------LSFLVYLNFGQNNLYGHLPNELGQLHRL 101 (233)
Q Consensus 50 ~~~l~~L~l~~~~l~--------------------~~~~~~~~~--------l~~L~~L~l~~n~~~~~~~~~l~~l~~L 101 (233)
.++++.|+|++|.+. ......|.+ +++|+.+++.+ .+....+.+|..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 467899999988876 122345556 78888888877 6665556678888888
Q ss_pred cEEEecCCcccCCcchhhcCCCCCcEEEeeeccc----cccCCccc----------------------------------
Q 036959 102 KSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSF----TGPIPWSF---------------------------------- 143 (233)
Q Consensus 102 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~~---------------------------------- 143 (233)
+.++++++.+....+..|..+.++..+....... .......+
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 8888888877645555666655555554433111 00000000
Q ss_pred ----------------cCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCc-EEEccCC
Q 036959 144 ----------------YNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLR-RLWMSDN 206 (233)
Q Consensus 144 ----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~n 206 (233)
..+++|+.+++.+|.+. .++...|..+++|+.+++.+| +..+.+..|..+.+|+ .+++.+
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~- 283 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA- 283 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence 12789999999999988 888888889999999999998 6667778899999999 999988
Q ss_pred cccCccchhccCcCCCCEEEecCCcCC
Q 036959 207 KFTGRLRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 207 ~~~~~~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
.++.+.+.+|.+|++|+.|++.+|.++
T Consensus 284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 284 SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred cceEEchhhhhCCccCCEEEeCCCccC
Confidence 777677899999999999999888764
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=5e-15 Score=126.16 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=27.1
Q ss_pred CCCCccEEEcccCccCC----CCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEee
Q 036959 73 NLSFLVYLNFGQNNLYG----HLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLR 131 (233)
Q Consensus 73 ~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 131 (233)
.+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+. ..+..+..+++|++|+++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEEC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhccc
Confidence 34445555555554431 12223344555555555555544 233444444455555443
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.49 E-value=1.6e-15 Score=122.15 Aligned_cols=167 Identities=18% Similarity=0.148 Sum_probs=97.0
Q ss_pred ceEeEEEecCCcccccCCCCC----C-CCCCccEEEcccCccCCCCchh-hhccCCccEEEecCCcccCCcchhh-----
Q 036959 51 RRVRVLNLSNIGLQGTIPPYL----G-NLSFLVYLNFGQNNLYGHLPNE-LGQLHRLKSFGLEDNKFSGSFPSWI----- 119 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~----~-~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~~~i~~~~~~~~----- 119 (233)
+.++.|++++|.+.......+ . ..++|+.|++++|.+....... ...+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 457778888877753222222 2 2257778888887765322222 2335567788888877763322322
Q ss_pred cCCCCCcEEEeeecccccc----CCccccCCCCCcEEEecCCcCcCcCch---HHhhcCCCCcEEEeeccccccc----C
Q 036959 120 GMLSKLQILSLRNNSFTGP----IPWSFYNISSLKWINLGFNSLSGTLPN---DMCNRLPKLQEIYLHSNKLFGQ----I 188 (233)
Q Consensus 120 ~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~----~ 188 (233)
...++|++|++++|.++.. ++..+...++|+.|++++|.+.+.-.. ......++|+.|++++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2356778888877776532 223345567777788877777521111 1122456777777777777532 2
Q ss_pred CCCcccccCCcEEEccCCcccCccchhcc
Q 036959 189 PSSLSHCIDLRRLWMSDNKFTGRLRENIG 217 (233)
Q Consensus 189 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 217 (233)
...+...++|++|+|++|.+++.....+.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 22334456777777777777755444444
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=2.7e-13 Score=97.30 Aligned_cols=106 Identities=22% Similarity=0.227 Sum_probs=87.9
Q ss_pred EeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeee
Q 036959 53 VRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRN 132 (233)
Q Consensus 53 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 132 (233)
.+.|+++++.+. .+|..+. +++++|++++|.+.+..|..|..+++|++|++++|++....+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 357888888887 5666553 7899999999999877788889999999999999999866666678889999999999
Q ss_pred ccccccCCccccCCCCCcEEEecCCcCcC
Q 036959 133 NSFTGPIPWSFYNISSLKWINLGFNSLSG 161 (233)
Q Consensus 133 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 161 (233)
|.+++..+..+..+++|+.|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99986556668888899999999998863
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=3.9e-13 Score=96.82 Aligned_cols=105 Identities=23% Similarity=0.287 Sum_probs=90.0
Q ss_pred cEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCC
Q 036959 78 VYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFN 157 (233)
Q Consensus 78 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 157 (233)
+.++++++.+. .+|..+ .++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67899999886 566544 378999999999999777888999999999999999999655556788999999999999
Q ss_pred cCcCcCchHHhhcCCCCcEEEeecccccc
Q 036959 158 SLSGTLPNDMCNRLPKLQEIYLHSNKLFG 186 (233)
Q Consensus 158 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 186 (233)
.+. .++...+..+++|+.|++++|++..
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCccc
Confidence 998 6777666689999999999999873
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.42 E-value=2.3e-15 Score=121.19 Aligned_cols=160 Identities=16% Similarity=0.094 Sum_probs=115.4
Q ss_pred CCCccEEEcccCccCCCCchhhhcc-----CCccEEEecCCcccCCcchhh-cCCCCCcEEEeeeccccccCCccc----
Q 036959 74 LSFLVYLNFGQNNLYGHLPNELGQL-----HRLKSFGLEDNKFSGSFPSWI-GMLSKLQILSLRNNSFTGPIPWSF---- 143 (233)
Q Consensus 74 l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~~~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~---- 143 (233)
++.|+.|++++|.+.......+... ++|++|++++|.+.......+ ..+.+|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999999999874433333333 689999999998863323222 345689999999998874433333
Q ss_pred -cCCCCCcEEEecCCcCcCcCchHH---hhcCCCCcEEEeeccccccc----CCCCcccccCCcEEEccCCcccCc----
Q 036959 144 -YNISSLKWINLGFNSLSGTLPNDM---CNRLPKLQEIYLHSNKLFGQ----IPSSLSHCIDLRRLWMSDNKFTGR---- 211 (233)
Q Consensus 144 -~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~---- 211 (233)
...++|+.|++++|.+.+.-...+ ....++|++|+|++|.+.+. ++..+...++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346789999999999863211111 23678999999999998643 244566778999999999999864
Q ss_pred cchhccCcCCCCEEEecCCcCC
Q 036959 212 LRENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 212 ~~~~l~~~~~L~~L~l~~n~l~ 233 (233)
++.++..+++|+.|++++|+|+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 4455567799999999999875
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=1.5e-14 Score=123.16 Aligned_cols=180 Identities=16% Similarity=0.104 Sum_probs=99.3
Q ss_pred ceEeEEEecCCccccc-CCCCCCCCCCccEEEcccCccCC-CCchhhhccCCccEEEe----------------------
Q 036959 51 RRVRVLNLSNIGLQGT-IPPYLGNLSFLVYLNFGQNNLYG-HLPNELGQLHRLKSFGL---------------------- 106 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l---------------------- 106 (233)
++++.|++++|.+.+. +...+..+++|+.|++++| +.. .++.....+++|++|++
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 6788888888775532 2222345666677766665 221 11111223455555555
Q ss_pred ------------cCCcccCCcchhhc-CCCCCcEEEee--e----cccccc-----CCccccCCCCCcEEEecCCcCcCc
Q 036959 107 ------------EDNKFSGSFPSWIG-MLSKLQILSLR--N----NSFTGP-----IPWSFYNISSLKWINLGFNSLSGT 162 (233)
Q Consensus 107 ------------~~~~i~~~~~~~~~-~l~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~ 162 (233)
..+.++......+. .+++|++|+++ + +.++.. ++..+..+++|+.|++++ .+.+.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 33333322222222 35566666666 2 222210 011134556677777755 44433
Q ss_pred CchHHhhcCCCCcEEEeecccccccCCCCc-ccccCCcEEEccCCcccCccch-hccCcCCCCEEEecCCcC
Q 036959 163 LPNDMCNRLPKLQEIYLHSNKLFGQIPSSL-SHCIDLRRLWMSDNKFTGRLRE-NIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 163 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l 232 (233)
....+...+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++.... .+..+++|+.|++++|++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 333444347788888888887754433333 5578888899988888654443 344578889999988876
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.38 E-value=3e-13 Score=115.21 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=62.3
Q ss_pred CCCCccEEEcccCccCCCCchhhh-ccCCccEEEecCC-cccCC-cchhhcCCCCCcEEEeeeccccccCCccc----cC
Q 036959 73 NLSFLVYLNFGQNNLYGHLPNELG-QLHRLKSFGLEDN-KFSGS-FPSWIGMLSKLQILSLRNNSFTGPIPWSF----YN 145 (233)
Q Consensus 73 ~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~~-~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~ 145 (233)
.+++|++|++++|.+.+..+..+. .+++|++|++.+| .+... .+..+..+++|++|++++|.+++..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 456777777777776644444443 5677777777776 33311 33333456777777777776654333222 34
Q ss_pred CCCCcEEEecCCc--CcCcCchHHhhcCCCCcEEEeecc
Q 036959 146 ISSLKWINLGFNS--LSGTLPNDMCNRLPKLQEIYLHSN 182 (233)
Q Consensus 146 ~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~n 182 (233)
+++|+.|+++++. +.......+...+++|+.|++++|
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5677777777665 211111122234566677766665
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.36 E-value=2.1e-12 Score=103.03 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=75.5
Q ss_pred EEEecCC-cccCCcchhhcCCCCCcEEEeee-ccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEee
Q 036959 103 SFGLEDN-KFSGSFPSWIGMLSKLQILSLRN-NSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLH 180 (233)
Q Consensus 103 ~L~l~~~-~i~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 180 (233)
.++.+++ .+. .+|. +..+.+|++|+|++ |.+.+..+..|..+++|+.|++++|.+. .++...+..+++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCC
Confidence 4577776 677 5676 77778888888885 8887665667778888888888888887 4444455578888888888
Q ss_pred cccccccCCCCcccccCCcEEEccCCcccC
Q 036959 181 SNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210 (233)
Q Consensus 181 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 210 (233)
+|.+.+..+..+..++ |+.|+|.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888755555555444 8888888887763
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.33 E-value=1.9e-11 Score=99.33 Aligned_cols=174 Identities=13% Similarity=0.063 Sum_probs=89.1
Q ss_pred eEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCC----------------------CchhhhccCCccEEEecCC
Q 036959 52 RVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGH----------------------LPNELGQLHRLKSFGLEDN 109 (233)
Q Consensus 52 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~----------------------~~~~l~~l~~L~~L~l~~~ 109 (233)
+++.+.+.. ++...-...|..+.+|+.+++.+|.+... ...+|..+++|+.+.+..+
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC
Confidence 355555553 34434445556666666666665544322 2233444444444444432
Q ss_pred cccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCc----CcCchHHhhcCCCCcEEEeeccccc
Q 036959 110 KFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLS----GTLPNDMCNRLPKLQEIYLHSNKLF 185 (233)
Q Consensus 110 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~L~~L~l~~n~~~ 185 (233)
+.......|.. .+|+.+.+. +.+.......|.+|++|+.+.+.++.+. ..++...|..+++|+.+.+.+ .+.
T Consensus 237 -l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~ 312 (401)
T 4fdw_A 237 -VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR 312 (401)
T ss_dssp -CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred -ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence 22122223333 344444442 2222233445566666777766665442 024445555666666666663 344
Q ss_pred ccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 186 GQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 186 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
.+....|..+.+|+.+.+..+ ++.....+|.++ +|+.+++.+|.+
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 444556666677777776443 444555666666 777777766653
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.31 E-value=2e-12 Score=103.46 Aligned_cols=180 Identities=12% Similarity=0.150 Sum_probs=111.4
Q ss_pred ceEeEEEecCCcccc-c-------CCCCCCCCCCccEEEcccCccC---------CCCchhhhccCCccEEEecCCcccC
Q 036959 51 RRVRVLNLSNIGLQG-T-------IPPYLGNLSFLVYLNFGQNNLY---------GHLPNELGQLHRLKSFGLEDNKFSG 113 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~-~-------~~~~~~~l~~L~~L~l~~n~~~---------~~~~~~l~~l~~L~~L~l~~~~i~~ 113 (233)
.+++.|.+....+.+ . +...+..+++|+.|.+.+.... ..+...+..+|+|+.|.++++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 567777777655431 1 1233445678888887654321 124556677889999999877312
Q ss_pred CcchhhcCCCCCcEEEeeeccccccCCcccc--CCCCCcEEEecCC--cCcC-----cCchHHh-hcCCCCcEEEeeccc
Q 036959 114 SFPSWIGMLSKLQILSLRNNSFTGPIPWSFY--NISSLKWINLGFN--SLSG-----TLPNDMC-NRLPKLQEIYLHSNK 183 (233)
Q Consensus 114 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~~~-----~~~~~~~-~~~~~L~~L~l~~n~ 183 (233)
.++. + .+++|++|++..+.+.......+. .+++|+.|+++.+ ...+ .+...+. ..+++|+.|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 2232 3 378899999988776543333332 6788888887531 1111 1111111 247889999998888
Q ss_pred ccccCCCCc---ccccCCcEEEccCCcccCcc----chhccCcCCCCEEEecCCcCC
Q 036959 184 LFGQIPSSL---SHCIDLRRLWMSDNKFTGRL----RENIGNLSKLRDLYTANNHLQ 233 (233)
Q Consensus 184 ~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~l~ 233 (233)
+....+..+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 764322222 24678999999998887643 334456788999999988874
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.30 E-value=2.9e-11 Score=98.27 Aligned_cols=173 Identities=17% Similarity=0.097 Sum_probs=110.7
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
.+++.+.+..+ +...-...|.++ +|+.+.+.. .+....+.+|..+++|+.+++.++.+.......|. +..|+.+.+
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 35788888755 654555667774 699999986 55545567899999999999998887744444554 467777777
Q ss_pred eeccccccCCccccCCCCCcEEEecCC---------------------cCcCcCchHHhhcCCCCcEEEeeccccc----
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFN---------------------SLSGTLPNDMCNRLPKLQEIYLHSNKLF---- 185 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~---------------------~~~~~~~~~~~~~~~~L~~L~l~~n~~~---- 185 (233)
..+ +.......|.++++|+.+.+..+ .+. .++...|..+++|+.+.+.++.+.
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~ 288 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVT-NIASRAFYYCPELAEVTTYGSTFNDDPE 288 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCC-EECTTTTTTCTTCCEEEEESSCCCCCTT
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCcc-EEChhHhhCCCCCCEEEeCCccccCCcc
Confidence 633 44334445666666666666542 122 333444556666666666665543
Q ss_pred -ccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCC
Q 036959 186 -GQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230 (233)
Q Consensus 186 -~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 230 (233)
.+.+..|..|++|+.+.+. +.+......+|.+|++|+.+.+..|
T Consensus 289 ~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 289 AMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred cEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 2344566667777777776 3355455667777777777777543
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.24 E-value=2.9e-11 Score=96.42 Aligned_cols=102 Identities=18% Similarity=0.121 Sum_probs=84.2
Q ss_pred EecCC-cccccCCCCCCCCCCccEEEccc-CccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeecc
Q 036959 57 NLSNI-GLQGTIPPYLGNLSFLVYLNFGQ-NNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNS 134 (233)
Q Consensus 57 ~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~ 134 (233)
+++++ .+. .+|. +..+.+|+.|++++ |.+....+..|..+++|+.|+|++|++.+..|..|..+++|++|+|++|.
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44455 566 5777 88899999999996 99987777889999999999999999997777788999999999999999
Q ss_pred ccccCCccccCCCCCcEEEecCCcCcC
Q 036959 135 FTGPIPWSFYNISSLKWINLGFNSLSG 161 (233)
Q Consensus 135 ~~~~~~~~~~~~~~L~~L~l~~~~~~~ 161 (233)
+++..+..+..++ |+.|++.+|.+..
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9855555555554 9999999998863
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.10 E-value=7.6e-11 Score=94.34 Aligned_cols=178 Identities=16% Similarity=0.205 Sum_probs=118.9
Q ss_pred CCceEeEEEecCCccc---------ccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhh
Q 036959 49 RHRRVRVLNLSNIGLQ---------GTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWI 119 (233)
Q Consensus 49 ~~~~l~~L~l~~~~l~---------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~ 119 (233)
.+++|+.|.+...... +.+...+..+++|+.|+++++.-. .++. + .+++|+.|++..+.+.......+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 3578999988765331 123344567789999999987422 2333 3 38899999999888763333334
Q ss_pred c--CCCCCcEEEeeec--ccccc-----CCccc--cCCCCCcEEEecCCcCcCcCchHHhh--cCCCCcEEEeecccccc
Q 036959 120 G--MLSKLQILSLRNN--SFTGP-----IPWSF--YNISSLKWINLGFNSLSGTLPNDMCN--RLPKLQEIYLHSNKLFG 186 (233)
Q Consensus 120 ~--~l~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~ 186 (233)
. .+++|++|+|+.+ ...+. +...+ ..+++|+.|++.+|.+.+..+..++. .+++|+.|+|+.|.+.+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 3 6899999998642 22111 11122 25789999999999886433333432 46799999999998875
Q ss_pred c----CCCCcccccCCcEEEccCCcccCccchhccC-cCCCCEEEecCCc
Q 036959 187 Q----IPSSLSHCIDLRRLWMSDNKFTGRLRENIGN-LSKLRDLYTANNH 231 (233)
Q Consensus 187 ~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~-~~~L~~L~l~~n~ 231 (233)
. ++..+..+++|+.|++++|.+++.....+.. + ..++++++++
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 3 3344456799999999999988665555554 3 3567887764
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.82 E-value=6.9e-10 Score=80.54 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=31.2
Q ss_pred CCCCcEEEeeccccccc----CCCCcccccCCcEEEc--cCCcccCc----cchhccCcCCCCEEEecCCcC
Q 036959 171 LPKLQEIYLHSNKLFGQ----IPSSLSHCIDLRRLWM--SDNKFTGR----LRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 171 ~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l--~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l 232 (233)
.++|++|+|++|.+... +...+...+.|++|+| ++|.+... +.+.+...++|++|++++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 34555555555554421 2233444455666666 55655533 233444456666666666654
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.69 E-value=3.2e-09 Score=81.07 Aligned_cols=79 Identities=25% Similarity=0.328 Sum_probs=45.7
Q ss_pred CCCCCcEEEeeeccccc--cCCccccCCCCCcEEEecCCcCcCcCchHHhhcCC--CCcEEEeecccccccCCC------
Q 036959 121 MLSKLQILSLRNNSFTG--PIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLP--KLQEIYLHSNKLFGQIPS------ 190 (233)
Q Consensus 121 ~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~------ 190 (233)
.+++|++|+|++|.+.+ .++..+..+++|+.|++++|.+.+. . .+ ..+. +|++|++++|++.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~-~l-~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-R-EL-DKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-G-GG-GGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-h-hh-hhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45667777777776664 2334445666777777777776532 1 11 1223 677777777776654442
Q ss_pred -CcccccCCcEEE
Q 036959 191 -SLSHCIDLRRLW 202 (233)
Q Consensus 191 -~~~~~~~L~~L~ 202 (233)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 245566776664
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=1.3e-08 Score=73.78 Aligned_cols=63 Identities=21% Similarity=0.173 Sum_probs=30.1
Q ss_pred CCCCcEEEecCCcCcCcC----chHHhhcCCCCcEEEe--eccccccc----CCCCcccccCCcEEEccCCccc
Q 036959 146 ISSLKWINLGFNSLSGTL----PNDMCNRLPKLQEIYL--HSNKLFGQ----IPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 146 ~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
.++|+.|++++|.+.+.- ...+ ...++|++|++ ++|.+... +...+...+.|++|++++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L-~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEAL-QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGG-GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHH-HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 344555555555554211 1111 13445666666 55555422 1223344466667777666654
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.57 E-value=2.9e-08 Score=70.70 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=61.0
Q ss_pred CCCCcEEEeeeccccccCCccccCCCCCcEEEecCCc-CcCcCchHHhhc----CCCCcEEEeeccc-ccccCCCCcccc
Q 036959 122 LSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNS-LSGTLPNDMCNR----LPKLQEIYLHSNK-LFGQIPSSLSHC 195 (233)
Q Consensus 122 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~~L~~L~l~~n~-~~~~~~~~~~~~ 195 (233)
-..|++|++++|.++......+..+++|+.|++++|. +++.-...+. . .++|++|++++|. +++..-..+..+
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~-~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS-QLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHH-TCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHH-hcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 4578899999888876555566788889999998885 5532222232 2 2468888888875 654433456678
Q ss_pred cCCcEEEccCCc-ccC
Q 036959 196 IDLRRLWMSDNK-FTG 210 (233)
Q Consensus 196 ~~L~~L~l~~n~-~~~ 210 (233)
++|+.|++++|. +++
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 888888888884 553
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.49 E-value=7.9e-07 Score=71.98 Aligned_cols=128 Identities=16% Similarity=0.081 Sum_probs=77.9
Q ss_pred hhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCC
Q 036959 95 LGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKL 174 (233)
Q Consensus 95 l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 174 (233)
+..+..++.+.+..+... .....|..+..++.+......+. ...+..+.+|+.+.+..+ +. .+....+..+++|
T Consensus 249 f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L 322 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSL 322 (394)
T ss_dssp TTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTC
T ss_pred ccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCC
Confidence 444555555555544332 33334445555555544433221 234566777777777654 43 4555566677888
Q ss_pred cEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCC
Q 036959 175 QEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230 (233)
Q Consensus 175 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 230 (233)
+.+++..+ ++.+...+|..|.+|+.+.+..+ ++.....+|.+|++|+.+++..+
T Consensus 323 ~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 323 VSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 88887654 44455667778888888888665 55556678888888888887654
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.40 E-value=4.1e-07 Score=69.43 Aligned_cols=80 Identities=26% Similarity=0.392 Sum_probs=62.2
Q ss_pred cCCCCCcEEEecCCcCcC--cCchHHhhcCCCCcEEEeecccccccCCCCccccc--CCcEEEccCCcccCccc------
Q 036959 144 YNISSLKWINLGFNSLSG--TLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCI--DLRRLWMSDNKFTGRLR------ 213 (233)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~------ 213 (233)
.++++|+.|++++|.+.+ .++. ....+++|+.|+|++|.+.+. ..+..+. +|++|+|++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 467899999999999984 2233 344899999999999999854 3344444 89999999999986444
Q ss_pred -hhccCcCCCCEEE
Q 036959 214 -ENIGNLSKLRDLY 226 (233)
Q Consensus 214 -~~l~~~~~L~~L~ 226 (233)
..+..+|+|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 3467889999887
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.39 E-value=2.7e-06 Score=68.80 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=118.0
Q ss_pred ceEeEEEecCCcccccCCCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEe
Q 036959 51 RRVRVLNLSNIGLQGTIPPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSL 130 (233)
Q Consensus 51 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 130 (233)
..++.+.+... +...-...+..+..++.+.+..+... .....|..+..++.+......+. ...|..+.+|+.+.+
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccc
Confidence 34555555433 22233456677888888888766433 34556788889998888765443 345778899999998
Q ss_pred eeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccC
Q 036959 131 RNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTG 210 (233)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 210 (233)
..+ +.......|.++.+|+.+.+..+ ++ .+....|..+++|+.+.+..+ +..+...+|..|.+|+.+++..+ +.
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~- 378 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE- 378 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-
Confidence 755 44344567889999999999754 55 677777778999999999876 55566778999999999999765 33
Q ss_pred ccchhccCcCCCCEE
Q 036959 211 RLRENIGNLSKLRDL 225 (233)
Q Consensus 211 ~~~~~l~~~~~L~~L 225 (233)
....+|.++++|+.+
T Consensus 379 ~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 379 QYRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGGBCTTCEEEEE
T ss_pred EhhheecCCCCCcEE
Confidence 345678899888875
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.37 E-value=9e-06 Score=65.73 Aligned_cols=107 Identities=14% Similarity=0.216 Sum_probs=47.8
Q ss_pred hcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCC
Q 036959 119 IGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDL 198 (233)
Q Consensus 119 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 198 (233)
|..+..|+.+.+..+... .....+.++++|+.+.+.. .+. .++...|..+.+|+.+.+..+ ++.+...+|..|.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 444445555544332221 2223444455555555432 222 344444444555555555433 222333445555555
Q ss_pred cEEEccCCcccCccchhccCcCCCCEEEecCC
Q 036959 199 RRLWMSDNKFTGRLRENIGNLSKLRDLYTANN 230 (233)
Q Consensus 199 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 230 (233)
+.+.+..+ ++.....+|.+|++|+.+++.++
T Consensus 337 ~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred CEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 55555332 33334445555555555555443
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=2.7e-07 Score=65.76 Aligned_cols=83 Identities=8% Similarity=0.045 Sum_probs=45.7
Q ss_pred CccEEEcccCccCCCCchhhhccCCccEEEecCCc-ccCCcchhhcCC----CCCcEEEeeecc-ccccCCccccCCCCC
Q 036959 76 FLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNK-FSGSFPSWIGML----SKLQILSLRNNS-FTGPIPWSFYNISSL 149 (233)
Q Consensus 76 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-i~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~~~~L 149 (233)
.|+.|+++++.++..--..+..+++|++|++++|. ++...-..+..+ ++|++|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45666666665554333445566666666666663 442222223332 357777777664 554333345566777
Q ss_pred cEEEecCCc
Q 036959 150 KWINLGFNS 158 (233)
Q Consensus 150 ~~L~l~~~~ 158 (233)
+.|+++++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777764
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.35 E-value=4.1e-06 Score=67.31 Aligned_cols=128 Identities=14% Similarity=0.174 Sum_probs=65.9
Q ss_pred hccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcCCCCc
Q 036959 96 GQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRLPKLQ 175 (233)
Q Consensus 96 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 175 (233)
..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +.......+..+.+|+.+.+..+ +. .++...+..+++|+
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLT 289 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCC
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccc
Confidence 33445555555433 22133344555566666665443 22223344555556666665432 22 34444455566666
Q ss_pred EEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEec
Q 036959 176 EIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTA 228 (233)
Q Consensus 176 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 228 (233)
.+.+.++.+..+....|..+.+|+.+.+..+ ++.+...+|.+|++|+.+.+.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 6666665555444555666666666666433 333444566666666666554
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.32 E-value=7e-06 Score=65.94 Aligned_cols=149 Identities=11% Similarity=0.013 Sum_probs=107.2
Q ss_pred CCCCCCCCCccEEEcccCccCCCCchhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCC
Q 036959 68 PPYLGNLSFLVYLNFGQNNLYGHLPNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNIS 147 (233)
Q Consensus 68 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 147 (233)
...+..+..++.+.+..+ +......++..+..|+.+.+..+ +.......|..+..|+.+.+..+ +.......|..+.
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 344556677777777654 33234456788889999999875 44355567888899999988654 3334455788899
Q ss_pred CCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCC
Q 036959 148 SLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKL 222 (233)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 222 (233)
+|+.+.+.++.+. .++...|..+.+|+.+.+..+ ++.+...+|..|.+|+.+.+..+ ++.+...+|.+++.+
T Consensus 287 ~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 287 NLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred ccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 9999999888887 677777778899999999765 45455678889999999888654 554556677776443
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.31 E-value=3.5e-06 Score=68.16 Aligned_cols=133 Identities=20% Similarity=0.163 Sum_probs=95.1
Q ss_pred chhhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEeeeccccccCCccccCCCCCcEEEecCCcCcCcCchHHhhcC
Q 036959 92 PNELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLRNNSFTGPIPWSFYNISSLKWINLGFNSLSGTLPNDMCNRL 171 (233)
Q Consensus 92 ~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 171 (233)
..+|..+..|+.+.+...... .....|..+..|+.+.+.. .+.......|.+|.+|+.+.+..+ ++ .+....|..+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C 333 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGC 333 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTC
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCC
Confidence 346778889999999876544 5567788899999999863 344344567889999999999764 44 5667777789
Q ss_pred CCCcEEEeecccccccCCCCcccccCCcEEEccCCcccCccchhccCcCCCCEEEecCCcC
Q 036959 172 PKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFTGRLRENIGNLSKLRDLYTANNHL 232 (233)
Q Consensus 172 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 232 (233)
.+|+.+.+..+ ++.+...+|..|.+|+.+++.++... ..++..+.+|+.+.+..|.+
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 99999999765 55455678999999999999987643 25678889999999887654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.57 E-value=2.1e-05 Score=56.97 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=30.5
Q ss_pred hccCCccEEEecCC-cccC----CcchhhcCCCCCcEEEeeeccccccCCc----cccCCCCCcEEEecCCcCc
Q 036959 96 GQLHRLKSFGLEDN-KFSG----SFPSWIGMLSKLQILSLRNNSFTGPIPW----SFYNISSLKWINLGFNSLS 160 (233)
Q Consensus 96 ~~l~~L~~L~l~~~-~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~ 160 (233)
..-+.|++|+++++ .+.. .+...+....+|++|+|++|.++..... .+..-+.|+.|++++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 33456666666654 4441 1223334445566666666655532111 1222344555555555543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.52 E-value=0.00019 Score=48.51 Aligned_cols=56 Identities=23% Similarity=0.338 Sum_probs=31.2
Q ss_pred EEEecCCcCc-CcCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCCccc
Q 036959 151 WINLGFNSLS-GTLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDNKFT 209 (233)
Q Consensus 151 ~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 209 (233)
.++.+++.++ ..+|..+ .++++.|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555553 1344322 235666666666666544555566666666666666554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.35 E-value=0.00016 Score=52.35 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=68.4
Q ss_pred CCCCCCccEEEcccC-ccCC----CCchhhhccCCccEEEecCCcccC----CcchhhcCCCCCcEEEeeeccccccC--
Q 036959 71 LGNLSFLVYLNFGQN-NLYG----HLPNELGQLHRLKSFGLEDNKFSG----SFPSWIGMLSKLQILSLRNNSFTGPI-- 139 (233)
Q Consensus 71 ~~~l~~L~~L~l~~n-~~~~----~~~~~l~~l~~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~~~~~~-- 139 (233)
+..-+.|+.|+++++ .+.. .+...+..-..|+.|+|++|.+.. .+...+....+|++|+|++|.++...
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344567888888875 5542 244556666788889998888873 33344556688999999998887432
Q ss_pred --CccccCCCCCcEEEecCCcC---cCc----CchHHhhcCCCCcEEEeeccc
Q 036959 140 --PWSFYNISSLKWINLGFNSL---SGT----LPNDMCNRLPKLQEIYLHSNK 183 (233)
Q Consensus 140 --~~~~~~~~~L~~L~l~~~~~---~~~----~~~~~~~~~~~L~~L~l~~n~ 183 (233)
...+..-+.|+.|++.++.. ... +.. ....-+.|..|+++.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCC
Confidence 22344455688888875432 211 111 12244566777766554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.77 E-value=0.0027 Score=42.74 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=17.6
Q ss_pred CCcEEEecCCcCcCcCchHHhhcCCCCcEEEeecccc
Q 036959 148 SLKWINLGFNSLSGTLPNDMCNRLPKLQEIYLHSNKL 184 (233)
Q Consensus 148 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 184 (233)
+++.|++++|.++ .++...+..+++|+.|+|++|++
T Consensus 32 ~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 3445555555554 44444444455555555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=79.73 E-value=2.6 Score=26.52 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=32.3
Q ss_pred cCchHHhhcCCCCcEEEeecccccccCCCCcccccCCcEEEccCC
Q 036959 162 TLPNDMCNRLPKLQEIYLHSNKLFGQIPSSLSHCIDLRRLWMSDN 206 (233)
Q Consensus 162 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 206 (233)
.+....|..+.+|+.+.+..+- +.+....|..|.+|+.+.+.+.
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred EecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 4556666688888888887753 3355667888888888888765
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.40 E-value=10 Score=23.66 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=15.4
Q ss_pred hhhccCCccEEEecCCcccCCcchhhcCCCCCcEEEee
Q 036959 94 ELGQLHRLKSFGLEDNKFSGSFPSWIGMLSKLQILSLR 131 (233)
Q Consensus 94 ~l~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 131 (233)
+|..+.+|+.+.+..+ ++......|..+.+|+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3444444444444432 222333344444444444443
No 167
>3s1b_A Mini-Z; VEGF, cystine knot, signaling protein; 2.90A {Homo sapiens}
Probab=26.19 E-value=38 Score=15.60 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCCchhh
Q 036959 11 QSALLMFKAHVIDPHSVL 28 (233)
Q Consensus 11 ~~~l~~~~~~~~~~~~~~ 28 (233)
.++|++.+++..+|+-.+
T Consensus 3 kecllrykeaaldpnlnl 20 (34)
T 3s1b_A 3 KECLLRYKEAALDPNLNL 20 (34)
T ss_dssp HHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHhhcCCChhH
Confidence 478999999998887554
Done!